BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017358
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 169/229 (73%)
Query: 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
+ VPMTRLRKRVA RL +++N+ A+LTTFNEV+M +M LR Y +AF ++HG++LG MS
Sbjct: 5 KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMS 64
Query: 205 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIE 264
+VKA V AL+ P VNA S AV T +GLV PV+R+ + + A+IE
Sbjct: 65 FYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
K+I LA K DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
V G V PMMY+AL+YDHRLIDGRE+V FL IK+++EDP RLLLD+
Sbjct: 185 AVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 3/226 (1%)
Query: 149 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVK 208
M+ +R+ +A + S++T +T +E D+T L+ R +K EK G+KL + VK
Sbjct: 203 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 261
Query: 209 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKE 266
A VSAL+ PV+N + + T +GL+VPVI++++R + +E
Sbjct: 262 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 321
Query: 267 ISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV 326
I+ LA+KA DG ++ EM G + TI+N G G TP+IN P+ AILG+ I +P+V
Sbjct: 322 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 381
Query: 327 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 372
G +V PM+ ++L++DHR+IDG A L IK ++ DP LL++
Sbjct: 382 DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 95 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
+P +GE I +G + K+ +PGD V D+ + +++ DK +++ SP G + +
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 59
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 3/225 (1%)
Query: 149 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVK 208
M+ +R+ +A + S++T +T +E D+T L+ R +K EK G+KL + VK
Sbjct: 19 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 77
Query: 209 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKE 266
A VSAL+ PV+N + + T +GL+VPVI++++R + +E
Sbjct: 78 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 137
Query: 267 ISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV 326
I+ LA+KA DG ++ EM G + TI+N G G TP+IN P+ AILG+ I +P+V
Sbjct: 138 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 197
Query: 327 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
G +V PM+ ++L++DHR+IDG A L IK ++ DP LL+
Sbjct: 198 DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 123/220 (55%)
Query: 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
+ +P+ +RK +A + S+ EVD T L++ R+ KD+F ++ G L +
Sbjct: 19 KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFA 78
Query: 205 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIE 264
F+KA AL+ P +N+ S A+ L VPVI+N++ + I
Sbjct: 79 FFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIA 138
Query: 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
+EIS LA KA +G +S +M GGTFT+++ G +GS+ S IIN PQ+AIL + SIV RP+
Sbjct: 139 REISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPV 198
Query: 325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 364
++ + R M+ + L+ DHR++DG A FL+ IK VE
Sbjct: 199 IIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 121/232 (52%), Gaps = 3/232 (1%)
Query: 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 201
G I+ VPMTRL + AT L S +T F D+T L R K A EK GVKL
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLT 71
Query: 202 LMSGFVKAAVSALQHQPVVNA--VXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMN 259
++ +KA L+ P N+ FAV T GL+VPVIRN ++ +
Sbjct: 72 VLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKS 131
Query: 260 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSI 319
++ E + LA+KA + D M G FTIS+ G G TPI+N P+ AILG+
Sbjct: 132 LLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA 191
Query: 320 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
+P+ G PR M+ ++L+YDHR+IDG A F +R+ D++ D R +LL
Sbjct: 192 SMQPVWDGKAFQPRLMLPLSLSYDHRVIDGAAAARFTKRLGDLLADIRAILL 243
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 148 PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFV 207
P+ + R+A ++ S EV L++LR + A E L L
Sbjct: 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTL----- 72
Query: 208 KAAVSALQHQPVVNAVXXXX----XXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEI 263
+ V AL+H ++N+ F T++GL+VPV+ +++ N E+
Sbjct: 73 RLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTREL 132
Query: 264 EKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRP 323
++ L A +G+++ E+ G TFT+SN G G P+IN P++AILG+ +I RP
Sbjct: 133 ASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRP 192
Query: 324 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
+VVGG VV RP M + +DHR++DG + F+ ++D++E P LLD+
Sbjct: 193 VVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 3/232 (1%)
Query: 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 201
G I+ VPMTRL + AT L S +T F D+T L R K A EK GVKL
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLT 71
Query: 202 LMSGFVKAAVSALQHQPVVNA--VXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMN 259
++ +KA L+ P N+ FAV T GL+VPVIRN ++ +
Sbjct: 72 VLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKS 131
Query: 260 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSI 319
++ E + LA+KA + D M G FTI++ G G TPI+N P+ AILG+
Sbjct: 132 LLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKA 191
Query: 320 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
+P+ G PR M+ ++L+YDHR+I+G A F +R+ D++ D R +LL
Sbjct: 192 SMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 3/232 (1%)
Query: 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 201
G I+ VPMTRL + AT L S +T F D+T L R K A +K GVKL
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAKKAGVKLT 71
Query: 202 LMSGFVKAAVSALQHQPVVNA--VXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMN 259
++ +KA L+ P N+ FAV T GL+VPVIRN ++ +
Sbjct: 72 VLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKS 131
Query: 260 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSI 319
++ E + LA+KA + D M G FTIS+ G G TPI+N P+ AILG+
Sbjct: 132 LLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA 191
Query: 320 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
+P+ G PR M+ ++L+YDHR+I+G A F +R+ D++ D R +LL
Sbjct: 192 SMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 3/232 (1%)
Query: 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 201
G I+ VPMTRL + AT L S +T F D+T L R K A EK GVKL
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLT 71
Query: 202 LMSGFVKAAVSALQHQPVVNA--VXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMN 259
++ +KA L+ P N+ FAV T GL+VPVIRN ++ +
Sbjct: 72 VLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKS 131
Query: 260 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSI 319
++ E + LA+KA + D M G FTIS+ G G TPI+N P+ AILG+
Sbjct: 132 LLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA 191
Query: 320 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
+P+ G PR M+ ++L+YD R+I+G A F +R+ D++ D R +LL
Sbjct: 192 SMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 15/227 (6%)
Query: 149 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVK 208
M LR+ + ++ ++ T EVD+T+++ + K K+ + +
Sbjct: 11 MHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKVTVTGFLAR 65
Query: 209 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSF--AVGTKKGLVVPVIRNSERMNFAEIEKE 266
S L+ P +NA+ + AV T GL V VI++++R + EI E
Sbjct: 66 IVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAE 125
Query: 267 ISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV 326
IS A +A + + +DE+ TFTI+N G G ++STPIIN P+ AILG+H I+ R
Sbjct: 126 ISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILERE--- 182
Query: 327 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
R MY++L+ DHRLIDG A F+ +K ++EDP ++ +I
Sbjct: 183 -----GRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 4/203 (1%)
Query: 174 NEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVXXXXXXXXXX 233
+EVD+T L+KLR + K + G+KL M F+KAA L P++NA
Sbjct: 60 DEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118
Query: 234 XXXXSF--AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTI 291
+ A+ T++GL+VP ++N + + EI E++ L K + G +S +++ GGTFT+
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL 178
Query: 292 SNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV-VGGNVVPRPMMYIALTYDHRLIDGR 350
SN G G + P+I PP+ AI + +I P G V +M ++ + DHR+IDG
Sbjct: 179 SNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGA 238
Query: 351 EAVFFLRRIKDIVEDPRRLLLDI 373
F K +E+P +LLD+
Sbjct: 239 TVSRFSNLWKSYLENPAFMLLDL 261
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 8/234 (3%)
Query: 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLG 201
GV ++P++ +R+ +A RL S+ T +V+M ++ +R + + LE K+
Sbjct: 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRS-KIS 67
Query: 202 LMSGFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFA 261
+ +KA+ A P N+ S AV T GL+ P++ N+
Sbjct: 68 VNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVE 127
Query: 262 EIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN 321
I ++ +LA KA +G + E GGTFTISN G++G + IINPPQ+ IL + + +
Sbjct: 128 TIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASED 187
Query: 322 RPMVV----GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371
+ + G +V MM + L+ DHR++DG +L + +E P +LL
Sbjct: 188 KLVPADNEKGFDVA--SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 245 KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTP 304
+ LVV I+ E M F + + ++A DG ++ ++ +G T +++N G G++ S P
Sbjct: 95 RSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVP 154
Query: 305 IINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLR 357
+ Q AI+G ++ P G R ++ + TYDHR+I G E+ FLR
Sbjct: 155 RLMQGQGAIIGAGAM-EYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLR 213
Query: 358 RIKDIVED 365
I ++ D
Sbjct: 214 TIHQLLLD 221
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
+D P ESI DGT+A + K+PG+ V+ DE I IETDKV ++V + GVI +
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEI 58
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
VD +VP + ES+ D T+A + K+PGD V DE + +IETDKV ++V + G++ V
Sbjct: 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAV 59
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 95 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
+P +GE I +G + K+ +PGD V D+ + +++ DK +++ SP G + +
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 58
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 95 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVI 144
+P +GE +T+G + ++ + GD VE D+ + ++ TDKVT+ + SP G I
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKI 55
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 95 VPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRK 154
VP +G DG + + L + GD +E+++ + +E+ K +++V SP+AGV+++V +
Sbjct: 6 VPDIG---GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSV----- 57
Query: 155 RVATRLKDSQNTFAL 169
++ +LK+ L
Sbjct: 58 KLGDKLKEGDAIIEL 72
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 35/60 (58%)
Query: 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
GD + ++P + ++ +G + K+LK+ G+ V + + +IETDK + + + G++ +
Sbjct: 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 60
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 84 SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVAS 138
S SG V +P + ++ GT+A++ K+ GD++ + IA++ETDK T+ S
Sbjct: 3 SGSSGQKVP--LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFES 55
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 35.4 bits (80), Expect = 0.054, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 84 SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGV 143
S SG + ++P + ++ +G + K+LK+ G+ V + + +IETDK + + + G+
Sbjct: 3 SGSSG--IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGI 60
Query: 144 IQNV 147
+ +
Sbjct: 61 LAKI 64
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
+ ++P + ++T GT+ ++ K+ G+++ + +A+IETDK TI + G + +
Sbjct: 10 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 66
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
G +V + +GE I + T+ ++ + GD V + I ++++DK ++ + S GVI+ +
Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 94 VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
++P + ++T GT+ ++ K+ G+++ + +A+IETDK TI + G + +
Sbjct: 31 LLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 84
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147
+ ++P + ++T GT+ ++ K+ G+++ + +A+IETD TI + G + +
Sbjct: 6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 99 GESITDGTLAKFLKQPGDRVEMDEPIAQI 127
GE I G LK+PGDRVE E +A +
Sbjct: 361 GEPIDHGVGVYLLKKPGDRVERGEALALV 389
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFN 174
GD+V ++ + +E DK +++V +P AGV++ L+ V ++K T +L+ F
Sbjct: 25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVK-----ELKVNVGDKVK----TGSLIMIFE 75
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFN 174
GD+V ++ + +E DK +++V +P AGV+ K + + D T +L+ F
Sbjct: 21 GDKVAAEQSLITVEGDKASMEVPAPFAGVV---------KELKVNVGDKVKTGSLIMIFE 71
>pdb|3OQO|A Chain A, Ccpa-Hpr-Ser46p-Syn Cre
pdb|3OQO|C Chain C, Ccpa-Hpr-Ser46p-Syn Cre
Length = 339
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 81 RLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID 135
L ++ G VD +V FMG +ITD +A+F + P V Q ET V ID
Sbjct: 107 HLLNTMLGKQVDGIV-FMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAID 160
>pdb|3OQM|A Chain A, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQM|C Chain C, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQN|A Chain A, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
pdb|3OQN|C Chain C, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
Length = 339
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 81 RLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID 135
L ++ G VD +V FMG +ITD +A+F + P V Q ET V ID
Sbjct: 107 HLLNTMLGKQVDGIV-FMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAID 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,731,144
Number of Sequences: 62578
Number of extensions: 372004
Number of successful extensions: 1068
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 48
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)