Query 017358
Match_columns 373
No_of_seqs 266 out of 1583
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 6.7E-78 1.5E-82 607.6 32.2 300 74-373 75-463 (463)
2 PTZ00144 dihydrolipoamide succ 100.0 1.5E-73 3.2E-78 572.1 33.6 286 88-373 42-418 (418)
3 KOG0559 Dihydrolipoamide succi 100.0 4.2E-74 9.1E-79 548.3 20.2 284 90-373 72-457 (457)
4 PRK05704 dihydrolipoamide succ 100.0 1.9E-72 4.1E-77 565.9 32.5 285 89-373 1-407 (407)
5 TIGR01347 sucB 2-oxoglutarate 100.0 2.8E-72 6.1E-77 563.7 32.9 283 91-373 1-403 (403)
6 PLN02744 dihydrolipoyllysine-r 100.0 4.6E-71 9.9E-76 568.0 31.8 294 78-371 98-539 (539)
7 COG0508 AceF Pyruvate/2-oxoglu 100.0 1.1E-68 2.5E-73 538.1 27.6 283 89-372 1-404 (404)
8 PLN02528 2-oxoisovalerate dehy 100.0 1.1E-67 2.5E-72 533.0 31.1 279 93-373 1-415 (416)
9 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.5E-67 3.3E-72 552.3 31.6 281 88-368 133-584 (590)
10 TIGR01348 PDHac_trf_long pyruv 100.0 1.3E-66 2.8E-71 541.4 32.2 280 90-371 116-546 (546)
11 TIGR01349 PDHac_trf_mito pyruv 100.0 1.4E-66 2.9E-71 527.8 30.6 221 149-371 212-435 (435)
12 PRK11854 aceF pyruvate dehydro 100.0 7.7E-64 1.7E-68 529.0 33.1 282 88-371 204-633 (633)
13 PRK11856 branched-chain alpha- 100.0 1.5E-63 3.2E-68 504.0 32.4 279 89-372 1-411 (411)
14 PRK11855 dihydrolipoamide acet 100.0 7.5E-63 1.6E-67 514.5 32.0 282 88-371 117-547 (547)
15 KOG0558 Dihydrolipoamide trans 100.0 5.4E-64 1.2E-68 476.9 19.9 282 90-373 64-473 (474)
16 KOG0557 Dihydrolipoamide acety 100.0 5E-63 1.1E-67 488.2 21.2 282 87-371 35-470 (470)
17 PF00198 2-oxoacid_dh: 2-oxoac 100.0 5.5E-62 1.2E-66 457.0 27.0 229 142-371 2-231 (231)
18 PRK14843 dihydrolipoamide acet 100.0 9.7E-61 2.1E-65 471.6 25.2 227 145-371 119-347 (347)
19 PRK11857 dihydrolipoamide acet 100.0 4.2E-60 9.1E-65 459.9 25.7 226 146-371 78-305 (306)
20 PRK12270 kgd alpha-ketoglutara 100.0 1E-47 2.2E-52 404.7 20.6 218 146-364 117-349 (1228)
21 PRK13757 chloramphenicol acety 100.0 1.3E-28 2.9E-33 228.6 20.6 181 167-365 30-214 (219)
22 PF00302 CAT: Chloramphenicol 100.0 5.3E-28 1.2E-32 223.1 21.9 177 166-360 24-206 (206)
23 COG4845 Chloramphenicol O-acet 99.9 6.1E-23 1.3E-27 184.4 17.6 186 166-369 27-217 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.4 8.8E-13 1.9E-17 102.6 5.7 56 91-146 1-56 (74)
25 PRK14875 acetoin dehydrogenase 99.3 1.8E-12 3.9E-17 127.6 7.2 58 89-146 1-58 (371)
26 PRK06748 hypothetical protein; 99.1 2.1E-10 4.5E-15 91.0 5.4 44 104-147 12-56 (83)
27 PRK11892 pyruvate dehydrogenas 99.0 4.4E-10 9.5E-15 115.6 6.1 58 89-146 1-58 (464)
28 TIGR02927 SucB_Actino 2-oxoglu 98.9 1.5E-09 3.3E-14 114.9 7.2 58 89-146 1-58 (590)
29 cd06663 Biotinyl_lipoyl_domain 98.9 2.3E-09 5E-14 82.5 6.1 54 93-146 2-55 (73)
30 PRK11854 aceF pyruvate dehydro 98.9 3.5E-09 7.6E-14 113.1 6.8 56 89-146 1-56 (633)
31 PRK05889 putative acetyl-CoA c 98.8 8.9E-09 1.9E-13 79.3 5.3 44 104-147 10-53 (71)
32 PRK11855 dihydrolipoamide acet 98.7 2.3E-08 5E-13 105.3 6.6 57 89-146 1-57 (547)
33 PRK08225 acetyl-CoA carboxylas 98.5 1.4E-07 2.9E-12 72.3 4.9 45 104-148 9-53 (70)
34 TIGR01348 PDHac_trf_long pyruv 98.5 1.5E-07 3.3E-12 99.0 6.2 55 92-147 2-56 (546)
35 COG0511 AccB Biotin carboxyl c 98.4 4.3E-07 9.4E-12 79.2 4.5 44 104-147 78-121 (140)
36 PRK06549 acetyl-CoA carboxylas 98.3 9.1E-07 2E-11 76.1 5.3 44 104-147 69-112 (130)
37 cd06850 biotinyl_domain The bi 98.3 1.5E-06 3.3E-11 64.7 5.6 44 103-146 6-49 (67)
38 cd06849 lipoyl_domain Lipoyl d 98.3 3.4E-06 7.3E-11 62.6 7.3 55 92-146 2-56 (74)
39 PRK05641 putative acetyl-CoA c 98.3 1.2E-06 2.6E-11 77.5 5.2 44 104-147 92-135 (153)
40 PLN02983 biotin carboxyl carri 98.1 2.6E-06 5.6E-11 80.8 4.8 38 110-147 218-255 (274)
41 TIGR00531 BCCP acetyl-CoA carb 98.0 4.9E-06 1.1E-10 73.9 4.5 39 109-147 100-138 (156)
42 PRK07051 hypothetical protein; 98.0 6.7E-06 1.5E-10 64.8 4.8 52 90-147 3-61 (80)
43 PRK14042 pyruvate carboxylase 98.0 5.9E-06 1.3E-10 87.6 5.3 44 104-147 533-576 (596)
44 PRK06302 acetyl-CoA carboxylas 98.0 7.1E-06 1.5E-10 72.8 4.4 39 109-147 99-137 (155)
45 TIGR01108 oadA oxaloacetate de 98.0 8.7E-06 1.9E-10 86.3 5.3 44 104-147 525-568 (582)
46 cd06848 GCS_H Glycine cleavage 98.0 1.2E-05 2.6E-10 65.5 4.9 56 90-146 15-71 (96)
47 TIGR02712 urea_carbox urea car 97.8 1.7E-05 3.7E-10 90.5 5.4 45 103-147 1139-1183(1201)
48 PRK14040 oxaloacetate decarbox 97.7 4.2E-05 9E-10 81.3 5.5 44 104-147 532-575 (593)
49 TIGR03077 not_gcvH glycine cle 97.7 4.6E-05 1E-09 63.8 3.9 36 112-147 38-73 (110)
50 TIGR01235 pyruv_carbox pyruvat 97.6 5.7E-05 1.2E-09 85.7 5.2 45 103-147 1081-1125(1143)
51 PRK00624 glycine cleavage syst 97.5 8.5E-05 1.9E-09 62.6 4.0 35 113-147 41-75 (114)
52 PRK09282 pyruvate carboxylase 97.3 0.00025 5.5E-09 75.5 5.2 44 104-147 530-573 (592)
53 PRK13380 glycine cleavage syst 97.2 0.00039 8.4E-09 61.0 4.7 56 91-147 31-87 (144)
54 PRK12999 pyruvate carboxylase; 97.1 0.00045 9.8E-09 78.7 4.9 45 104-148 1084-1128(1146)
55 PRK01202 glycine cleavage syst 96.9 0.00088 1.9E-08 57.5 3.7 36 112-147 45-80 (127)
56 TIGR00527 gcvH glycine cleavag 96.8 0.0011 2.4E-08 57.0 3.4 37 111-147 43-79 (127)
57 PF13533 Biotin_lipoyl_2: Biot 96.5 0.0026 5.5E-08 45.6 2.9 30 103-132 9-38 (50)
58 PF01597 GCV_H: Glycine cleava 96.1 0.0066 1.4E-07 51.7 4.0 36 112-147 39-74 (122)
59 COG4770 Acetyl/propionyl-CoA c 96.1 0.0057 1.2E-07 63.8 4.2 44 104-147 583-626 (645)
60 COG1038 PycA Pyruvate carboxyl 95.8 0.0073 1.6E-07 65.2 3.6 44 104-147 1087-1130(1149)
61 COG0509 GcvH Glycine cleavage 95.6 0.0093 2E-07 51.3 2.8 37 111-147 46-82 (131)
62 KOG0369 Pyruvate carboxylase [ 95.2 0.021 4.5E-07 60.7 4.1 45 104-148 1114-1158(1176)
63 PF13375 RnfC_N: RnfC Barrel s 94.4 0.062 1.3E-06 44.3 4.5 53 91-147 28-80 (101)
64 PRK08225 acetyl-CoA carboxylas 93.7 0.067 1.5E-06 40.6 3.2 26 103-128 45-70 (70)
65 KOG0368 Acetyl-CoA carboxylase 93.3 0.075 1.6E-06 60.8 3.8 44 103-146 692-735 (2196)
66 PF07247 AATase: Alcohol acety 92.3 4.7 0.0001 41.5 15.4 174 173-363 253-480 (480)
67 KOG0238 3-Methylcrotonyl-CoA c 91.9 0.086 1.9E-06 54.6 1.8 43 105-147 610-652 (670)
68 PRK06748 hypothetical protein; 91.8 0.22 4.8E-06 39.6 3.8 29 103-131 49-77 (83)
69 PF09891 DUF2118: Uncharacteri 90.2 0.32 6.9E-06 43.0 3.6 44 103-146 87-131 (150)
70 COG3608 Predicted deacylase [G 89.9 0.38 8.2E-06 47.7 4.2 44 102-145 261-307 (331)
71 PRK07051 hypothetical protein; 89.1 0.41 8.8E-06 37.4 3.1 27 102-128 53-79 (80)
72 cd06250 M14_PaAOTO_like An unc 89.0 0.54 1.2E-05 47.3 4.7 44 103-146 295-342 (359)
73 cd06253 M14_ASTE_ASPA_like_3 A 88.2 0.69 1.5E-05 45.3 4.7 44 103-146 235-281 (298)
74 TIGR02946 acyl_WS_DGAT acyltra 87.8 8.1 0.00018 39.3 12.5 164 172-365 232-441 (446)
75 TIGR03309 matur_yqeB selenium- 87.5 0.74 1.6E-05 44.1 4.2 36 107-146 174-209 (256)
76 TIGR02971 heterocyst_DevB ABC 86.6 0.53 1.2E-05 46.1 2.9 27 105-131 25-51 (327)
77 cd06251 M14_ASTE_ASPA_like_1 A 86.3 1.1 2.4E-05 43.5 5.0 43 103-145 225-269 (287)
78 PRK09783 copper/silver efflux 86.2 1.1 2.5E-05 45.6 5.2 27 103-129 130-157 (409)
79 PF05896 NQRA: Na(+)-transloca 85.7 0.79 1.7E-05 44.0 3.4 44 108-155 41-86 (257)
80 PF07831 PYNP_C: Pyrimidine nu 85.5 0.66 1.4E-05 36.1 2.4 31 101-131 27-57 (75)
81 PF12700 HlyD_2: HlyD family s 85.4 0.55 1.2E-05 45.4 2.3 30 103-133 28-57 (328)
82 PF00668 Condensation: Condens 85.2 24 0.00052 32.6 13.4 32 336-367 129-160 (301)
83 TIGR02994 ectoine_eutE ectoine 84.7 1.3 2.9E-05 43.9 4.7 44 103-146 261-308 (325)
84 TIGR00998 8a0101 efflux pump m 84.7 0.8 1.7E-05 44.8 3.2 31 103-133 49-79 (334)
85 TIGR01936 nqrA NADH:ubiquinone 84.5 0.84 1.8E-05 47.3 3.3 44 103-147 36-79 (447)
86 cd06254 M14_ASTE_ASPA_like_4 A 84.3 1.6 3.5E-05 42.4 5.0 44 103-146 229-274 (288)
87 PRK05889 putative acetyl-CoA c 84.2 1.1 2.4E-05 34.0 3.1 26 103-128 46-71 (71)
88 PF00364 Biotin_lipoyl: Biotin 83.8 0.93 2E-05 34.8 2.5 25 103-127 50-74 (74)
89 COG0511 AccB Biotin carboxyl c 83.8 1.2 2.6E-05 38.8 3.5 36 94-129 105-140 (140)
90 PRK06549 acetyl-CoA carboxylas 83.7 1.7 3.6E-05 37.6 4.3 25 103-127 105-129 (130)
91 cd06252 M14_ASTE_ASPA_like_2 A 83.5 1.7 3.7E-05 42.8 4.9 44 103-146 250-297 (316)
92 cd06255 M14_ASTE_ASPA_like_5 A 83.3 1.7 3.8E-05 42.3 4.8 42 103-145 237-281 (293)
93 PRK10559 p-hydroxybenzoic acid 83.2 0.94 2E-05 44.5 2.9 30 103-132 54-83 (310)
94 COG4072 Uncharacterized protei 83.0 1.6 3.5E-05 37.8 3.8 43 103-145 98-141 (161)
95 PRK05352 Na(+)-translocating N 82.9 1.1 2.4E-05 46.4 3.5 44 104-148 38-81 (448)
96 PF02749 QRPTase_N: Quinolinat 82.0 0.91 2E-05 36.2 1.9 24 107-130 46-69 (88)
97 PF00529 HlyD: HlyD family sec 80.9 1.1 2.4E-05 42.8 2.4 30 103-132 8-37 (305)
98 TIGR01730 RND_mfp RND family e 79.8 1.5 3.3E-05 42.2 3.0 30 103-132 33-62 (322)
99 PRK03598 putative efflux pump 79.6 1.3 2.8E-05 43.6 2.4 29 103-131 50-78 (331)
100 TIGR00531 BCCP acetyl-CoA carb 79.2 1.8 3.8E-05 38.5 2.9 28 101-128 129-156 (156)
101 PRK15136 multidrug efflux syst 79.1 1.5 3.3E-05 44.4 2.8 29 103-131 68-96 (390)
102 TIGR01945 rnfC electron transp 78.9 1.8 4E-05 44.6 3.4 42 105-147 40-81 (435)
103 PRK06302 acetyl-CoA carboxylas 78.4 1.9 4.2E-05 38.2 2.9 27 102-128 129-155 (155)
104 PRK10476 multidrug resistance 77.9 1.8 3.9E-05 42.9 2.9 30 103-132 55-84 (346)
105 TIGR01843 type_I_hlyD type I s 77.7 1.9 4.1E-05 43.3 3.0 31 103-133 50-80 (423)
106 PF07247 AATase: Alcohol acety 77.7 16 0.00035 37.6 10.0 33 335-367 140-172 (480)
107 KOG3373 Glycine cleavage syste 77.5 1.2 2.7E-05 39.6 1.4 37 111-147 87-123 (172)
108 PRK09578 periplasmic multidrug 76.7 2 4.3E-05 43.3 2.8 35 97-132 65-99 (385)
109 PF13437 HlyD_3: HlyD family s 76.4 4.3 9.3E-05 32.6 4.3 43 103-145 6-51 (105)
110 PLN02226 2-oxoglutarate dehydr 75.7 2.7 5.8E-05 43.8 3.5 29 102-130 140-168 (463)
111 COG1726 NqrA Na+-transporting 74.8 2.7 5.9E-05 42.1 3.1 35 109-146 42-78 (447)
112 PRK11578 macrolide transporter 74.4 2.6 5.6E-05 42.2 3.0 29 103-131 68-96 (370)
113 PLN02983 biotin carboxyl carri 73.3 3 6.5E-05 40.2 2.9 28 101-128 246-273 (274)
114 COG4656 RnfC Predicted NADH:ub 72.3 3.3 7.1E-05 43.4 3.1 51 91-146 31-81 (529)
115 PRK05035 electron transport co 71.7 3.6 7.9E-05 45.0 3.5 53 91-147 35-87 (695)
116 PRK09859 multidrug efflux syst 71.7 3.2 6.8E-05 41.9 2.9 29 103-131 68-96 (385)
117 cd06850 biotinyl_domain The bi 71.7 4.3 9.2E-05 29.4 2.9 25 103-127 43-67 (67)
118 KOG0559 Dihydrolipoamide succi 71.6 3.2 6.9E-05 41.6 2.7 27 103-129 122-148 (457)
119 PRK15030 multidrug efflux syst 71.4 3.4 7.4E-05 41.9 3.1 29 103-131 72-100 (397)
120 PRK09294 acyltransferase PapA5 70.5 1.2E+02 0.0025 30.6 14.0 45 255-299 290-347 (416)
121 TIGR03794 NHPM_micro_HlyD NHPM 70.2 3.6 7.8E-05 42.0 2.9 31 103-133 65-95 (421)
122 PRK11556 multidrug efflux syst 69.5 3.9 8.5E-05 41.8 3.0 29 103-131 94-122 (415)
123 cd00210 PTS_IIA_glc PTS_IIA, P 68.4 4.1 8.8E-05 34.9 2.4 27 104-130 78-104 (124)
124 TIGR00830 PTBA PTS system, glu 66.3 4.7 0.0001 34.4 2.4 28 104-131 78-105 (121)
125 TIGR01000 bacteriocin_acc bact 66.0 4.8 0.0001 41.6 2.9 30 102-131 65-94 (457)
126 PRK05641 putative acetyl-CoA c 65.3 6.1 0.00013 35.0 3.0 26 102-127 127-152 (153)
127 PRK11892 pyruvate dehydrogenas 64.0 31 0.00068 36.0 8.4 31 101-131 50-81 (464)
128 cd06849 lipoyl_domain Lipoyl d 63.5 7.3 0.00016 27.8 2.7 24 104-127 51-74 (74)
129 COG0157 NadC Nicotinate-nucleo 62.0 6.3 0.00014 38.3 2.6 25 107-131 65-89 (280)
130 PRK14875 acetoin dehydrogenase 61.6 8.2 0.00018 37.7 3.5 29 103-131 52-80 (371)
131 cd06663 Biotinyl_lipoyl_domain 61.1 8.9 0.00019 28.7 2.9 25 103-127 49-73 (73)
132 PTZ00144 dihydrolipoamide succ 60.2 8.8 0.00019 39.5 3.5 30 101-130 92-121 (418)
133 COG0845 AcrA Membrane-fusion p 59.7 7.8 0.00017 37.1 2.9 27 103-129 73-99 (372)
134 PRK05704 dihydrolipoamide succ 59.0 9.8 0.00021 39.0 3.6 30 101-130 50-79 (407)
135 PF00358 PTS_EIIA_1: phosphoen 58.1 4.1 9E-05 35.2 0.6 28 104-131 82-109 (132)
136 TIGR01347 sucB 2-oxoglutarate 57.8 11 0.00023 38.7 3.6 30 101-130 48-77 (403)
137 PLN02528 2-oxoisovalerate dehy 57.6 11 0.00023 38.8 3.6 30 100-129 45-74 (416)
138 PRK09439 PTS system glucose-sp 57.6 8.2 0.00018 34.8 2.4 28 104-131 100-127 (169)
139 PLN02663 hydroxycinnamoyl-CoA: 56.3 11 0.00025 38.3 3.6 30 336-365 145-174 (431)
140 PLN00140 alcohol acetyltransfe 54.5 14 0.00031 38.0 4.0 30 336-365 148-177 (444)
141 PF02458 Transferase: Transfer 54.4 15 0.00033 37.0 4.1 31 336-366 147-177 (432)
142 PRK08072 nicotinate-nucleotide 51.6 12 0.00026 36.3 2.7 24 108-131 66-89 (277)
143 PLN02481 Omega-hydroxypalmitat 51.0 19 0.00041 36.9 4.2 30 336-365 158-187 (436)
144 cd01572 QPRTase Quinolinate ph 48.9 16 0.00034 35.3 3.0 29 104-132 56-84 (268)
145 PRK06543 nicotinate-nucleotide 48.2 15 0.00032 35.9 2.7 26 107-132 66-91 (281)
146 PRK05742 nicotinate-nucleotide 48.1 15 0.00032 35.7 2.7 24 108-131 68-91 (277)
147 PRK06096 molybdenum transport 47.0 16 0.00034 35.7 2.7 25 107-131 62-86 (284)
148 cd01573 modD_like ModD; Quinol 46.5 16 0.00034 35.4 2.6 26 106-131 56-81 (272)
149 PRK09282 pyruvate carboxylase 46.2 17 0.00036 39.2 3.0 26 103-128 566-591 (592)
150 PLN03157 spermidine hydroxycin 46.0 24 0.00052 36.2 4.0 30 336-365 146-175 (447)
151 TIGR01349 PDHac_trf_mito pyruv 45.7 23 0.00049 36.7 3.8 39 93-131 2-40 (435)
152 PRK06978 nicotinate-nucleotide 45.6 17 0.00037 35.7 2.7 25 107-131 83-107 (294)
153 cd01568 QPRTase_NadC Quinolina 45.5 17 0.00038 35.0 2.7 27 105-131 56-82 (269)
154 PRK07428 nicotinate-nucleotide 45.4 17 0.00037 35.6 2.6 24 108-131 74-97 (288)
155 PF04952 AstE_AspA: Succinylgl 45.2 29 0.00063 33.2 4.3 43 103-145 226-272 (292)
156 COG0508 AceF Pyruvate/2-oxoglu 44.9 23 0.00049 36.4 3.6 30 101-130 50-79 (404)
157 PRK09016 quinolinate phosphori 44.3 18 0.00039 35.6 2.6 26 108-133 87-112 (296)
158 PRK14042 pyruvate carboxylase 44.1 21 0.00045 38.5 3.3 27 103-129 569-595 (596)
159 COG2190 NagE Phosphotransferas 44.0 18 0.00039 32.2 2.3 28 104-131 85-112 (156)
160 TIGR01334 modD putative molybd 43.3 20 0.00042 35.0 2.7 26 106-131 60-85 (277)
161 PRK07896 nicotinate-nucleotide 42.9 20 0.00043 35.2 2.7 26 107-132 77-102 (289)
162 PRK05848 nicotinate-nucleotide 42.4 20 0.00044 34.8 2.7 24 108-131 60-83 (273)
163 PRK06106 nicotinate-nucleotide 42.1 21 0.00046 34.8 2.7 26 106-131 70-95 (281)
164 PLN02716 nicotinate-nucleotide 41.7 21 0.00046 35.2 2.7 25 107-131 79-103 (308)
165 PRK08385 nicotinate-nucleotide 41.4 21 0.00046 34.7 2.6 25 107-131 59-83 (278)
166 TIGR00078 nadC nicotinate-nucl 41.2 22 0.00048 34.2 2.7 24 108-131 56-79 (265)
167 TIGR02643 T_phosphoryl thymidi 39.2 22 0.00048 36.8 2.5 29 100-128 374-402 (437)
168 PRK11856 branched-chain alpha- 36.1 35 0.00075 34.8 3.4 28 102-129 51-78 (411)
169 TIGR02645 ARCH_P_rylase putati 36.1 29 0.00062 36.5 2.8 32 98-129 439-470 (493)
170 PRK05820 deoA thymidine phosph 35.6 27 0.00059 36.2 2.5 30 100-129 375-404 (440)
171 PRK04350 thymidine phosphoryla 34.1 32 0.0007 36.2 2.8 32 98-129 431-462 (490)
172 TIGR02712 urea_carbox urea car 33.7 45 0.00097 39.1 4.1 27 102-128 1175-1201(1201)
173 TIGR03327 AMP_phos AMP phospho 33.0 33 0.00072 36.1 2.6 32 98-129 440-471 (500)
174 TIGR02644 Y_phosphoryl pyrimid 32.8 33 0.00072 35.2 2.6 29 102-130 370-398 (405)
175 COG1566 EmrA Multidrug resista 32.6 46 0.001 33.5 3.5 35 91-130 53-87 (352)
176 PLN02744 dihydrolipoyllysine-r 32.6 42 0.00091 35.8 3.4 27 101-127 160-187 (539)
177 TIGR01235 pyruv_carbox pyruvat 31.9 38 0.00081 39.5 3.1 26 103-128 1118-1143(1143)
178 PRK07188 nicotinate phosphorib 31.8 42 0.00091 33.8 3.1 27 105-131 70-96 (352)
179 PRK08662 nicotinate phosphorib 30.4 41 0.00089 33.7 2.8 26 104-131 69-94 (343)
180 PRK06078 pyrimidine-nucleoside 30.2 41 0.00089 34.9 2.8 30 102-131 372-401 (434)
181 PF02337 Gag_p10: Retroviral G 29.9 87 0.0019 25.3 4.0 61 154-214 28-88 (90)
182 PF01551 Peptidase_M23: Peptid 28.9 48 0.001 26.1 2.4 26 105-130 50-75 (96)
183 PRK06559 nicotinate-nucleotide 28.5 46 0.00099 32.7 2.6 27 106-132 71-99 (290)
184 KOG1668 Elongation factor 1 be 28.1 30 0.00064 32.8 1.2 29 108-136 180-208 (231)
185 COG0213 DeoA Thymidine phospho 27.6 47 0.001 34.2 2.6 28 102-129 373-400 (435)
186 PRK14040 oxaloacetate decarbox 27.5 52 0.0011 35.5 3.1 25 103-127 568-592 (593)
187 TIGR01995 PTS-II-ABC-beta PTS 27.4 30 0.00066 37.4 1.3 29 103-131 541-569 (610)
188 TIGR00998 8a0101 efflux pump m 26.8 82 0.0018 30.6 4.2 35 90-130 204-238 (334)
189 PRK09824 PTS system beta-gluco 26.4 32 0.0007 37.3 1.3 28 104-131 558-585 (627)
190 PF09793 AD: Anticodon-binding 25.9 2.8E+02 0.006 22.0 6.4 40 195-239 27-67 (91)
191 PRK12999 pyruvate carboxylase; 25.8 57 0.0012 38.1 3.1 26 103-128 1120-1145(1146)
192 TIGR00999 8a0102 Membrane Fusi 24.8 1.1E+02 0.0024 28.4 4.5 27 103-129 95-121 (265)
193 PRK10255 PTS system N-acetyl g 23.8 39 0.00084 36.9 1.3 29 104-132 578-606 (648)
194 PRK12784 hypothetical protein; 23.8 93 0.002 24.5 3.0 27 105-131 52-78 (84)
195 COG4770 Acetyl/propionyl-CoA c 23.0 64 0.0014 34.6 2.6 26 103-128 619-644 (645)
196 PF03869 Arc: Arc-like DNA bin 22.5 2.7E+02 0.006 19.6 5.1 47 166-221 3-49 (50)
197 PF06898 YqfD: Putative stage 22.4 76 0.0016 32.2 3.0 43 103-145 196-245 (385)
198 CHL00117 rpoC2 RNA polymerase 22.1 82 0.0018 37.4 3.5 38 109-146 405-450 (1364)
199 PRK09294 acyltransferase PapA5 21.2 81 0.0017 31.7 2.9 26 338-363 113-138 (416)
200 cd00516 PRTase_typeII Phosphor 21.1 78 0.0017 30.2 2.7 28 104-131 48-75 (281)
201 PF07687 M20_dimer: Peptidase 20.4 90 0.0019 24.7 2.6 28 338-365 79-106 (111)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=6.7e-78 Score=607.55 Aligned_cols=300 Identities=85% Similarity=1.258 Sum_probs=284.5
Q ss_pred CccccceeeeccCCCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee-------
Q 017358 74 SFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN------- 146 (373)
Q Consensus 74 ~~~~~~~r~~~~~~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~------- 146 (373)
+.-++|.|.|....+...+|+||++|++|+||+|.+|+|++||.|++||+||+|||||+++||+||++|+|.+
T Consensus 75 ~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd 154 (463)
T PLN02226 75 STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD 154 (463)
T ss_pred hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC
Confidence 3446777888765444489999999999999999999999999999999999999999999999999999977
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 155 ~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (463)
T PLN02226 155 TVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPPKERE 234 (463)
T ss_pred EecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCCCcccccCcccccCCCc
Confidence
Q ss_pred --cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEE
Q 017358 147 --VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI 224 (373)
Q Consensus 147 --vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i 224 (373)
+|++++||.||++|++|++++|||+++.++|+|+|+++|+++|+.+.++.|.++|+++|++||+++||++||++|+.|
T Consensus 235 ~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~ 314 (463)
T PLN02226 235 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVI 314 (463)
T ss_pred eeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEE
Confidence 025678999999999999999999999999999999999999987666678999999999999999999999999999
Q ss_pred eCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCccc
Q 017358 225 DGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTP 304 (373)
Q Consensus 225 ~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tp 304 (373)
+++.+++++++|||+||++++||++|||++++++++.||+++++++++++|+|+|+++|++||||||||+|++|+++|+|
T Consensus 315 ~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftP 394 (463)
T PLN02226 315 DGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTP 394 (463)
T ss_pred cCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceec
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 305 IINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 305 ii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
||||||+|||++|+++++|++.||++++|++|+|||+||||++||+++|+||++|+++||+|+.||+++
T Consensus 395 IInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~~ 463 (463)
T PLN02226 395 IINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463 (463)
T ss_pred cccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998874
No 2
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.5e-73 Score=572.11 Aligned_cols=286 Identities=62% Similarity=1.019 Sum_probs=275.4
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee---------------------
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------------------- 146 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~--------------------- 146 (373)
..+.+|+||++|++|+||+|.+|+|++||.|++||+|++|||||+++|++||.+|+|.+
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 34689999999999999999999999999999999999999999999999999999987
Q ss_pred ----------------------------------------------------------------------cchhhHHHHH
Q 017358 147 ----------------------------------------------------------------------VPMTRLRKRV 156 (373)
Q Consensus 147 ----------------------------------------------------------------------vpls~~rk~i 156 (373)
+|++++||.|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~I 201 (418)
T PTZ00144 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRI 201 (418)
T ss_pred CccccccccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhccccCCCCCCCCCCccccCCCceeeeCcHHHHHH
Confidence 0257789999
Q ss_pred HHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCcc
Q 017358 157 ATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYID 236 (373)
Q Consensus 157 a~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~in 236 (373)
|++|++|++++|||+++.++|+|+|+++|+++++.+.++.|.++|+++|++||+++||++||.+|++|+++++.+++++|
T Consensus 202 A~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vn 281 (418)
T PTZ00144 202 AERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVD 281 (418)
T ss_pred HHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCC
Confidence 99999999999999999999999999999999877666668999999999999999999999999999998999999999
Q ss_pred EEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEe
Q 017358 237 ISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGM 316 (373)
Q Consensus 237 IgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~v 316 (373)
||+||++++||++|||++++++++.||+++++++++++|+|+|+++|+.||||||||+|++|+++|+|||||||+|||++
T Consensus 282 IgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgv 361 (418)
T PTZ00144 282 ISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGM 361 (418)
T ss_pred EEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 317 HSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 317 G~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
|+++++|++.+|++++|++|+|||+||||++||++||+||++|+++||+|+.||+++
T Consensus 362 G~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 362 HAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred ccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 3
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=4.2e-74 Score=548.30 Aligned_cols=284 Identities=72% Similarity=1.118 Sum_probs=279.8
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee-----------------------
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN----------------------- 146 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~----------------------- 146 (373)
.+++.+|.++|+++||+|.+|++++||.|++||.|++|||||.+++|+||.+|+|++
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA 151 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA 151 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence 689999999999999999999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------------------------------------c
Q 017358 147 -------------------------------------------------------------------------------V 147 (373)
Q Consensus 147 -------------------------------------------------------------------------------v 147 (373)
+
T Consensus 152 pa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RV 231 (457)
T KOG0559|consen 152 PAKGGASAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRV 231 (457)
T ss_pred CccccccCCCccCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCccccCccccCCCCCcccccCCCcchhhh
Confidence 5
Q ss_pred chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCC
Q 017358 148 PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD 227 (373)
Q Consensus 148 pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~ 227 (373)
++++||+.||.||++|+++.+.++.+.||||++|+++|+++++.|.+++|+|+.|+.+|+||++.||++.|.+|+.|+|+
T Consensus 232 kMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~ 311 (457)
T KOG0559|consen 232 KMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD 311 (457)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccC
Q 017358 228 DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIIN 307 (373)
Q Consensus 228 ~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~ 307 (373)
+|+|+|++||++||+|+.||++|||+|++.+++.||..++..|..+||+|+|+.+||.||||||||-|.||..+.|||||
T Consensus 312 ~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIIN 391 (457)
T KOG0559|consen 312 DIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIIN 391 (457)
T ss_pred eeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 308 PPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 308 pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
|||+|||++.+|.++|++++|++++|+||.+.||||||++||.+|.-||+.+|+++|||..||+++
T Consensus 392 pPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 392 PPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred CchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.9e-72 Score=565.94 Aligned_cols=285 Identities=64% Similarity=1.020 Sum_probs=274.4
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee----------------------
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN---------------------- 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~---------------------- 146 (373)
|.++|+||++|++|+||+|.+|+|++||.|++||+|+++||||+++|++||++|+|.+
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 5679999999999999999999999999999999999999999999999999999876
Q ss_pred ------------------------------------------------------------------c-------------
Q 017358 147 ------------------------------------------------------------------V------------- 147 (373)
Q Consensus 147 ------------------------------------------------------------------v------------- 147 (373)
+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 0
Q ss_pred ---------------------chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHH
Q 017358 148 ---------------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 206 (373)
Q Consensus 148 ---------------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~l 206 (373)
|++++||+||++|++|++++|||+++.++|+|+|+++|+++|+.+.++.|.++|+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 24678999999999999999999999999999999999999877666668999999999
Q ss_pred HHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCC
Q 017358 207 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAG 286 (373)
Q Consensus 207 ikAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~g 286 (373)
+||+++||++||.+|++|+++++++++++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|+.|
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~g 320 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTG 320 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcCh
Q 017358 287 GTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDP 366 (373)
Q Consensus 287 gTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P 366 (373)
|||||||+|++|+.+|+|||||||+|||++|+++++|++.||++++|++|+|||+||||++||+++|+||++|+++||||
T Consensus 321 gTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p 400 (407)
T PRK05704 321 GTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP 400 (407)
T ss_pred ceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC
Q 017358 367 RRLLLDI 373 (373)
Q Consensus 367 ~~lll~~ 373 (373)
+.||+++
T Consensus 401 ~~ll~~~ 407 (407)
T PRK05704 401 ERLLLDL 407 (407)
T ss_pred HHHhhcC
Confidence 9998864
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.8e-72 Score=563.73 Aligned_cols=283 Identities=64% Similarity=1.030 Sum_probs=273.3
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee------------------------
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN------------------------ 146 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~------------------------ 146 (373)
++|+||++|++|+||+|.+|+|++||.|++||+|+++||||+++|++||.+|+|.+
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999999999999999876
Q ss_pred ----------------------------------------------------------------c---------------
Q 017358 147 ----------------------------------------------------------------V--------------- 147 (373)
Q Consensus 147 ----------------------------------------------------------------v--------------- 147 (373)
+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 160 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAP 160 (403)
T ss_pred cccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCCC
Confidence 0
Q ss_pred -----------------chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHH
Q 017358 148 -----------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAA 210 (373)
Q Consensus 148 -----------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAv 210 (373)
|++++||+||++|++|++++|||+++.++|+|+|+++|+++++.+.++.|.++|+++|++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~ 240 (403)
T TIGR01347 161 AAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAV 240 (403)
T ss_pred CcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999876666789999999999999
Q ss_pred HHHHhcCccceEEEeCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEE
Q 017358 211 VSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFT 290 (373)
Q Consensus 211 a~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTft 290 (373)
++||++||.||++|+++++++++++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|++|||||
T Consensus 241 a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfT 320 (403)
T TIGR01347 241 VAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFT 320 (403)
T ss_pred HHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhc
Q 017358 291 ISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLL 370 (373)
Q Consensus 291 ISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~ll 370 (373)
|||+|++|..+|+|||||||+|||++|+++++|++.||++++|++|+|||+||||++||+++|+||++|+++||||+.||
T Consensus 321 ISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll 400 (403)
T TIGR01347 321 ITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL 400 (403)
T ss_pred EecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 017358 371 LDI 373 (373)
Q Consensus 371 l~~ 373 (373)
+++
T Consensus 401 ~~~ 403 (403)
T TIGR01347 401 LDL 403 (403)
T ss_pred hcC
Confidence 864
No 6
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=4.6e-71 Score=567.98 Aligned_cols=294 Identities=33% Similarity=0.498 Sum_probs=273.6
Q ss_pred cceeeeccCCCc--eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee---------
Q 017358 78 SRSRLFSSDSGD--LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------- 146 (373)
Q Consensus 78 ~~~r~~~~~~~~--~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~--------- 146 (373)
...|+|++...+ .++++||++|++|+||+|.+|+|++||.|++||++++|||||+++|++||.+|+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~ 177 (539)
T PLN02744 98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177 (539)
T ss_pred cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence 456889876544 599999999999999999999999999999999999999999999986665544322
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 178 v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRr 257 (539)
T PLN02744 178 IKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARK 257 (539)
T ss_pred cCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHH
Confidence
Q ss_pred ------------------------------------------------------cchhhHHHHHHHHhhhhcccceeEEE
Q 017358 147 ------------------------------------------------------VPMTRLRKRVATRLKDSQNTFALLTT 172 (373)
Q Consensus 147 ------------------------------------------------------vpls~~rk~ia~~m~~S~~~~P~~~~ 172 (373)
+|+++|||.||++|++|++++|||++
T Consensus 258 LAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~ 337 (539)
T PLN02744 258 LAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYL 337 (539)
T ss_pred HHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEE
Confidence 02567889999999999999999999
Q ss_pred EeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCCCeEEEEE
Q 017358 173 FNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVI 252 (373)
Q Consensus 173 ~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~GL~vpvI 252 (373)
+.++|+|+|+++|+++|+.+.++.|.|+|+++|++||++.||++||++|++|+++.+++++++|||+||++++||++|||
T Consensus 338 ~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVI 417 (539)
T PLN02744 338 TVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVV 417 (539)
T ss_pred EEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcC
Confidence 99999999999999998765555689999999999999999999999999999989999999999999999999999999
Q ss_pred ecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCC-CCCCCCcccccCCCcceEEEeeeeEEEEEE--eCCe
Q 017358 253 RNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGG-VYGSLLSTPIINPPQSAILGMHSIVNRPMV--VGGN 329 (373)
Q Consensus 253 ~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG-~~G~~~~tpii~pp~~aIL~vG~i~~~pvv--~dG~ 329 (373)
++++++++.||+++++++.++||+|+|+++|++||||||||+| ++|+.+|+|||||||+|||++|+++++|++ .+|+
T Consensus 418 r~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~ 497 (539)
T PLN02744 418 KDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQ 497 (539)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCe
Confidence 9999999999999999999999999999999999999999997 899999999999999999999999999998 4899
Q ss_pred EeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 330 VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 330 i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
+++|++|+|||+||||++||+++|+||++|+++||||+.||+
T Consensus 498 i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 498 YNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred EEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999999999999999999999999999999999998874
No 7
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-68 Score=538.12 Aligned_cols=283 Identities=54% Similarity=0.903 Sum_probs=272.8
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee----------------------
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN---------------------- 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~---------------------- 146 (373)
|.++|+||+|||+|+||+|.+|+||+||.|++||+|+||||||+++||+||++|+|.+
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 5689999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence
Q ss_pred -----------------cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHH
Q 017358 147 -----------------VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 209 (373)
Q Consensus 147 -----------------vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likA 209 (373)
+|++++||.||++|.+|++++||++.+.++|+++++++|+++++.+.++ |.|+||++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 1368899999999999999999999999999999999999998876644 9999999999999
Q ss_pred HHHHHhcCccceEEEeCC--eeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 017358 210 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGG 287 (373)
Q Consensus 210 va~Al~~~P~~N~~i~~~--~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~gg 287 (373)
++.||+++|.+|++++++ .+++++++|||+||++++||++|||++++++++.+|++++.++..++|+|+|+++|++||
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~gg 319 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGG 319 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCc
Confidence 999999999999888865 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChh
Q 017358 288 TFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 367 (373)
Q Consensus 288 TftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~ 367 (373)
||||||+|++|...|+||+|+||++||++|++.++|++.+|++.+|++|+|+++||||++||+++++|+..++++||||.
T Consensus 320 tftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~ 399 (404)
T COG0508 320 TFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE 399 (404)
T ss_pred eEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 017358 368 RLLLD 372 (373)
Q Consensus 368 ~lll~ 372 (373)
.|+++
T Consensus 400 ~ll~~ 404 (404)
T COG0508 400 RLLLE 404 (404)
T ss_pred hhhcC
Confidence 98864
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.1e-67 Score=532.96 Aligned_cols=279 Identities=28% Similarity=0.523 Sum_probs=263.4
Q ss_pred EEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee--------------------------
Q 017358 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN-------------------------- 146 (373)
Q Consensus 93 ~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~-------------------------- 146 (373)
|+||++|++|+||+|.+|+|++||.|++||+|+++||||+.++++||.+|++.+
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 479999999999999999999999999999999999999999999999987755
Q ss_pred -------------------------------------------------------------------c------------
Q 017358 147 -------------------------------------------------------------------V------------ 147 (373)
Q Consensus 147 -------------------------------------------------------------------v------------ 147 (373)
.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 0
Q ss_pred ----------------------------chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCc
Q 017358 148 ----------------------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 199 (373)
Q Consensus 148 ----------------------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~k 199 (373)
|++++||.||++|++|+ ++|||+++.++|+|+|+++|+++++.. ++.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCCc
Confidence 12468999999999997 899999999999999999999998642 345899
Q ss_pred cchHHHHHHHHHHHHhcCccceEEEeCC--eeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcC
Q 017358 200 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG 277 (373)
Q Consensus 200 lS~~~~likAva~Al~~~P~~N~~i~~~--~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g 277 (373)
+||++|++||+++||++||++|++|+++ .+.+|+++|||+||++++||++|||++++++++.||+++++++++++|+|
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~g 318 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAEN 318 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999864 79999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEe-CCeEeEEcEEEEEEEEcccccChHHHHHHH
Q 017358 278 SISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFL 356 (373)
Q Consensus 278 ~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~-dG~i~~r~~m~lslt~DHRvvDGa~aarFl 356 (373)
+|+++|+.||||||||+|++|..+|+|||||||+|||++|+++++|++. ||++.+|++|+|||+||||+|||+++|+||
T Consensus 319 kL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 398 (416)
T PLN02528 319 KLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFC 398 (416)
T ss_pred CCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 589999999999999999999999999999
Q ss_pred HHHHHHhcChhhhcccC
Q 017358 357 RRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 357 ~~lk~~Le~P~~lll~~ 373 (373)
++|+++||||+.||+++
T Consensus 399 ~~lk~~le~P~~lll~~ 415 (416)
T PLN02528 399 NEWKSYVEKPELLMLHM 415 (416)
T ss_pred HHHHHHHhCHHHHHhcc
Confidence 99999999999998864
No 9
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.5e-67 Score=552.33 Aligned_cols=281 Identities=43% Similarity=0.702 Sum_probs=259.5
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee---------------------
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------------------- 146 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~--------------------- 146 (373)
++.++++||++|++|+||+|.+|+|++||.|++||+||+|||||+++|++||++|+|.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 44589999999999999999999999999999999999999999999986555544432
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence
Q ss_pred ---------------------------------------------------------------cchhhHHHHHHHHhhhh
Q 017358 147 ---------------------------------------------------------------VPMTRLRKRVATRLKDS 163 (373)
Q Consensus 147 ---------------------------------------------------------------vpls~~rk~ia~~m~~S 163 (373)
+|+++|||.||++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 01355677888899999
Q ss_pred cccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC--CeeEEcCCccEEEEE
Q 017358 164 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV 241 (373)
Q Consensus 164 ~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~--~~i~~~d~inIgvAV 241 (373)
++++||||++.++|+|+|+++|+++|+.+.+++|.|+|+++||+||+++||++||.||++|++ ++|++|+++|||+||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999987655556899999999999999999999999999974 479999999999999
Q ss_pred ecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEE
Q 017358 242 GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN 321 (373)
Q Consensus 242 ~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~ 321 (373)
++++||++|||++++++++.+|++++++|.++||+|+|+++||+||||||||+|++|+++|+|||||||+|||++|++++
T Consensus 453 ~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~ 532 (590)
T TIGR02927 453 DTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVK 532 (590)
T ss_pred ECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC---C--eEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhh
Q 017358 322 RPMVVG---G--NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRR 368 (373)
Q Consensus 322 ~pvv~d---G--~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~ 368 (373)
+|++.+ | ++.+|++|+|||+||||+|||+++|+||++|+++||||..
T Consensus 533 ~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 533 RPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred EEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 999852 4 4999999999999999999999999999999999999873
No 10
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.3e-66 Score=541.36 Aligned_cols=280 Identities=38% Similarity=0.611 Sum_probs=264.0
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee-----------------------
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN----------------------- 146 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~----------------------- 146 (373)
.++|+||++|+ |+||+|.+|+|++||.|++||+|+++||||+++|++||++|+|.+
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 999999999999999999999999999999999998777776543
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence
Q ss_pred ----------------------------------------------cchhhHHHHHHHHhhhhcccceeEEEEeeeechH
Q 017358 147 ----------------------------------------------VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 180 (373)
Q Consensus 147 ----------------------------------------------vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~ 180 (373)
+|++++||.||++|++|++++|||+++.++|+|+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 0135568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCC
Q 017358 181 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERM 258 (373)
Q Consensus 181 L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~ 258 (373)
|+++|+++|+.+.+ .|.|+||++|++||+++||++||.+|++|++ +.+++++++|||+||++++||++|||++++++
T Consensus 355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 433 (546)
T TIGR01348 355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRK 433 (546)
T ss_pred HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccC
Confidence 99999999875443 5889999999999999999999999999974 47999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEE
Q 017358 259 NFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYI 338 (373)
Q Consensus 259 sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~l 338 (373)
++.+|++++++|++++|+|+|+++||.||||||||+|++|+.+|+|||||||++||++|++.++|++.+|++++|++|+|
T Consensus 434 sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~l 513 (546)
T TIGR01348 434 GITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPL 513 (546)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 339 ALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 339 slt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
||+||||++||+++|+||++|+++||||+.||+
T Consensus 514 tls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 514 SLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred eEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998764
No 11
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.4e-66 Score=527.78 Aligned_cols=221 Identities=34% Similarity=0.513 Sum_probs=212.6
Q ss_pred hhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCe
Q 017358 149 MTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDD 228 (373)
Q Consensus 149 ls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~ 228 (373)
++++||.||++|++|++++|||+++.++|+|+|+++|+++++...+ |.++|+++|++||+++||++||.||+++++++
T Consensus 212 ls~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~ 289 (435)
T TIGR01349 212 LSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNF 289 (435)
T ss_pred ccHHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCe
Confidence 4688999999999999999999999999999999999999865322 78999999999999999999999999999989
Q ss_pred eEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCC
Q 017358 229 IIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINP 308 (373)
Q Consensus 229 i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~p 308 (373)
+++|+++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|+.||||||||+|++|..+|+|||||
T Consensus 290 i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~ 369 (435)
T TIGR01349 290 IRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINP 369 (435)
T ss_pred EEEeCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeeeeEEEEEEeCCe---EeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 309 PQSAILGMHSIVNRPMVVGGN---VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 309 p~~aIL~vG~i~~~pvv~dG~---i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
||+|||++|++.++|++.+|+ +++|++|+|||+||||++||+++|+||++|+++||||+.||+
T Consensus 370 pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 370 PQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred CceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999998877 999999999999999999999999999999999999998764
No 12
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=7.7e-64 Score=529.03 Aligned_cols=282 Identities=33% Similarity=0.575 Sum_probs=263.9
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee---------------------
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------------------- 146 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~--------------------- 146 (373)
.+.++|+||++| |+||+|.+|++++||.|++||+|++|||||++++++||++|+|.+
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999999998888887544
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence
Q ss_pred c--------------------------------------------chhhHHHHHHHHhhhhcccceeEEEEeeeechHHH
Q 017358 147 V--------------------------------------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 182 (373)
Q Consensus 147 v--------------------------------------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~ 182 (373)
+ |++++||.||++|++|++++|||+++.++|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 0 13556899999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hcCCccchHHHHHHHHHHHHhcCccceEEEe--CCeeEEcCCccEEEEEecCCCeEEEEEecCcCCC
Q 017358 183 KLRSDYKDAFLE-KHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMN 259 (373)
Q Consensus 183 ~~rk~~~~~~~~-~~g~klS~~~~likAva~Al~~~P~~N~~i~--~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~s 259 (373)
++|+++++.... +.|.++|+++|++||+++||++||+||++|+ ++++++|+++|||+||++++||++|||+++++++
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~s 521 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKG 521 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCC
Confidence 999988754322 3589999999999999999999999999996 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEE
Q 017358 260 FAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIA 339 (373)
Q Consensus 260 l~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~ls 339 (373)
+.+|+++++++.+++++|+|+++|+.||||||||+||+|+++|+|||||||+|||++|++.++|++.+|.++.|++||||
T Consensus 522 l~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~ls 601 (633)
T PRK11854 522 IIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLS 601 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 340 LTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 340 lt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
|+||||++||+++|+||++|+++||+|..|||
T Consensus 602 lt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 602 LSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999998765
No 13
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.5e-63 Score=503.96 Aligned_cols=279 Identities=42% Similarity=0.742 Sum_probs=266.8
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee----------------------
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN---------------------- 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~---------------------- 146 (373)
|..+++||++|+++++|+|.+|++++||.|++||+++++||||++++++||.+|++.+
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 5578999999999999999999999999999999999999999999999999988866
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~ 160 (411)
T PRK11856 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE 160 (411)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence
Q ss_pred -------c-----------------------chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhc
Q 017358 147 -------V-----------------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKH 196 (373)
Q Consensus 147 -------v-----------------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~ 196 (373)
. |++++||.||++|++|+.++|||+++.++|+|+|+++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~----- 235 (411)
T PRK11856 161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI----- 235 (411)
T ss_pred HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence 0 25789999999999999999999999999999999999998542
Q ss_pred CCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhc
Q 017358 197 GVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND 276 (373)
Q Consensus 197 g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~ 276 (373)
+.++||+++++||+++||++||+||++|+++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++++
T Consensus 236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~ 315 (411)
T PRK11856 236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKARE 315 (411)
T ss_pred ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHH
Q 017358 277 GSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL 356 (373)
Q Consensus 277 g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl 356 (373)
|+++++|+.+|||+|||+||+|..+++|+||+||++||++|+++++|++.+|+++++.+|||||+||||++||+|+|+||
T Consensus 316 ~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl 395 (411)
T PRK11856 316 GKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFL 395 (411)
T ss_pred CCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHhcChhhhccc
Q 017358 357 RRIKDIVEDPRRLLLD 372 (373)
Q Consensus 357 ~~lk~~Le~P~~lll~ 372 (373)
++|+++||+|+.||++
T Consensus 396 ~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 396 KALKELLENPALLLLE 411 (411)
T ss_pred HHHHHHHhCHHHHhcC
Confidence 9999999999998864
No 14
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=7.5e-63 Score=514.49 Aligned_cols=282 Identities=45% Similarity=0.735 Sum_probs=264.1
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee---------------------
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN--------------------- 146 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~--------------------- 146 (373)
.+..+|+||++|+ |+||+|.+|++++||.|++||+|++|||||+.++++||++|+|.+
T Consensus 117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 3458999999999 999999999999999999999999999999999998777777654
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 275 (547)
T PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE 275 (547)
T ss_pred CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence
Q ss_pred -c---------------------------------------------chhhHHHHHHHHhhhhcccceeEEEEeeeechH
Q 017358 147 -V---------------------------------------------PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 180 (373)
Q Consensus 147 -v---------------------------------------------pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~ 180 (373)
+ |++++||.||++|++|++++|||+++.++|+|+
T Consensus 276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~ 355 (547)
T PRK11855 276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355 (547)
T ss_pred HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence 0 135578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe--CCeeEEcCCccEEEEEecCCCeEEEEEecCcCC
Q 017358 181 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERM 258 (373)
Q Consensus 181 L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~--~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~ 258 (373)
|+++|+++++.+. +.|.++||+++++||+++||++||+||++|+ ++.+++|+++|||+||++++||++|||++++++
T Consensus 356 l~~~r~~~~~~~~-~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~ 434 (547)
T PRK11855 356 LEALRKQLKKEAE-KAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKK 434 (547)
T ss_pred HHHHHHHhhhhhh-hcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccC
Confidence 9999999986543 3489999999999999999999999999998 458999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEE
Q 017358 259 NFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYI 338 (373)
Q Consensus 259 sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~l 338 (373)
++.+|+++++++++++|+|++.++|+.+|||||||+||+|+++|+|++||||+|||++|+++++|++.+|.+..|++|+|
T Consensus 435 sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~l 514 (547)
T PRK11855 435 SLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPL 514 (547)
T ss_pred CHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 339 ALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 339 slt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
||+||||+|||+|+|+||++|+++||+|+.||+
T Consensus 515 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 515 SLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred eEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998764
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=5.4e-64 Score=476.94 Aligned_cols=282 Identities=31% Similarity=0.574 Sum_probs=271.6
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee-----------------------
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN----------------------- 146 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~----------------------- 146 (373)
.+.|++.++||++.|.++.+|+||+||.|++.|++|||++||++++|.+.++|++++
T Consensus 64 vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~ 143 (474)
T KOG0558|consen 64 VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDS 143 (474)
T ss_pred eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccC
Confidence 789999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 144 ~ds~e~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~ 223 (474)
T KOG0558|consen 144 QDSPEDSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSE 223 (474)
T ss_pred cCCcccCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCce
Confidence
Q ss_pred ----------------------cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHH
Q 017358 147 ----------------------VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204 (373)
Q Consensus 147 ----------------------vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~ 204 (373)
+|+.+.+|+|.+.|+++. .+|||.+..|||+|.|+++|+++++. .++.|+|+||++
T Consensus 224 ~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltfmP 301 (474)
T KOG0558|consen 224 HAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTFMP 301 (474)
T ss_pred eecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHh-cCCccccccccChHHHHHHHHHHhhh-hhhcCceeeehH
Confidence 589999999999999986 59999999999999999999999874 556789999999
Q ss_pred HHHHHHHHHHhcCccceEEEeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCcc
Q 017358 205 GFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISID 282 (373)
Q Consensus 205 ~likAva~Al~~~P~~N~~i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~ 282 (373)
|++||++.||.++|.+|+.++. ..|++...+|||+|++|+.||++|.|+|++.+|+.||++++++|.+..+.|+|+++
T Consensus 302 f~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~ 381 (474)
T KOG0558|consen 302 FFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPE 381 (474)
T ss_pred HHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEe-CCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHH
Q 017358 283 EMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKD 361 (373)
Q Consensus 283 d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~-dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~ 361 (373)
|+.|||||+||+|.+|.++..|+++|||+||.++|+|.+.|.++ .|++....+|.++|++||||+||+..|||-+.||+
T Consensus 382 D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~ 461 (474)
T KOG0558|consen 382 DLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKE 461 (474)
T ss_pred hccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred HhcChhhhcccC
Q 017358 362 IVEDPRRLLLDI 373 (373)
Q Consensus 362 ~Le~P~~lll~~ 373 (373)
|||||+.+|+++
T Consensus 462 YlE~Pa~mll~l 473 (474)
T KOG0558|consen 462 YLENPALMLLQL 473 (474)
T ss_pred HhhCHHHHhhcc
Confidence 999999999874
No 16
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=5e-63 Score=488.24 Aligned_cols=282 Identities=32% Similarity=0.491 Sum_probs=268.8
Q ss_pred CCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee--------------------
Q 017358 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN-------------------- 146 (373)
Q Consensus 87 ~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~-------------------- 146 (373)
.+.+.+|.||.|+++|+||.|++|.+|+||++++||+||||||||+++++|++++|+|.+
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 477899999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence
Q ss_pred --------------------------------------------------cchhhHHHHHHHHhhhhcccceeEEEEeee
Q 017358 147 --------------------------------------------------VPMTRLRKRVATRLKDSQNTFALLTTFNEV 176 (373)
Q Consensus 147 --------------------------------------------------vpls~~rk~ia~~m~~S~~~~P~~~~~~ev 176 (373)
+|++.||+.||+||.+|++++||++++.++
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~ 274 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV 274 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence 478999999999999999999999999999
Q ss_pred echHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC-CeeEEcCCccEEEEEecCCCeEEEEEecC
Q 017358 177 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKKGLVVPVIRNS 255 (373)
Q Consensus 177 DvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~-~~i~~~d~inIgvAV~~~~GL~vpvI~~a 255 (373)
++++++++|+++| .++.+.++|++++++||++.|+.++|+.|+.|.+ +.|.+++.|||++||.+++||++|+|.|+
T Consensus 275 ~~d~ll~~r~~ln---~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na 351 (470)
T KOG0557|consen 275 NLDKLLALREKLN---FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNA 351 (470)
T ss_pred ehHHHHHHHHHhh---hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhc
Confidence 9999999999997 2356889999999999999999999999999987 67899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEE---eCCeEeE
Q 017358 256 ERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV---VGGNVVP 332 (373)
Q Consensus 256 ~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv---~dG~i~~ 332 (373)
+.+.+.+|.+++.++..++|.++|.|++++||||+||||||+|++.|+.|+||||++||++|...+..+. .++++..
T Consensus 352 ~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~ 431 (470)
T KOG0557|consen 352 DAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSV 431 (470)
T ss_pred ccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999998887653 2457888
Q ss_pred EcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 333 RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 333 r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
...|+|||++|||++||+.++|||+.|++++|||..|++
T Consensus 432 ~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 432 INAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 899999999999999999999999999999999999875
No 17
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=5.5e-62 Score=456.98 Aligned_cols=229 Identities=46% Similarity=0.748 Sum_probs=204.0
Q ss_pred ceeeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccce
Q 017358 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 221 (373)
Q Consensus 142 G~l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N 221 (373)
|..+.+|++++||+||++|++|++++||++++.++|+|+|+++|+++++...+ .|.++|++++++||+++||++||+||
T Consensus 2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lN 80 (231)
T PF00198_consen 2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELN 80 (231)
T ss_dssp SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGS
T ss_pred CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhc
Confidence 44566899999999999999999999999999999999999999999876433 35599999999999999999999999
Q ss_pred EEEeCCe-eEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCC
Q 017358 222 AVIDGDD-IIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL 300 (373)
Q Consensus 222 ~~i~~~~-i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~ 300 (373)
++|+++. +++++++|||+||++++||++|||++++++|+.||+++++++.+++++|+++++|++||||||||+|++|++
T Consensus 81 a~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~ 160 (231)
T PF00198_consen 81 ASWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVE 160 (231)
T ss_dssp EEEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-S
T ss_pred cccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcc
Confidence 9999877 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 301 LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 301 ~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
+|+||+||||+|||++|+++++|++.+|+++++++|++||+||||++||+++|+||++|+++||||+.|||
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886
No 18
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=9.7e-61 Score=471.59 Aligned_cols=227 Identities=36% Similarity=0.629 Sum_probs=218.4
Q ss_pred eecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEE
Q 017358 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI 224 (373)
Q Consensus 145 ~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i 224 (373)
+.+|++++||.||++|++|++++|||+++.++|+|+|+++|+++++.+.++.|.++|+++|++||++.||++||.||++|
T Consensus 119 ~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~ 198 (347)
T PRK14843 119 ERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASL 198 (347)
T ss_pred eeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEE
Confidence 44799999999999999999999999999999999999999999876655668999999999999999999999999999
Q ss_pred eC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCc
Q 017358 225 DG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS 302 (373)
Q Consensus 225 ~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~ 302 (373)
++ +++++++++|||+||++++||++|||++++++++.||+++++++.+++|+|+|+++|++||||||||+|++|+++|
T Consensus 199 ~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~ 278 (347)
T PRK14843 199 TEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSF 278 (347)
T ss_pred ecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccce
Confidence 84 4699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 303 TPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 303 tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
+|||||||+|||++|++.++|+++||++++|++|+|||+||||++||+++|+||+.|+++||+|+.|++
T Consensus 279 tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 279 GPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred eccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999998763
No 19
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=4.2e-60 Score=459.91 Aligned_cols=226 Identities=38% Similarity=0.624 Sum_probs=218.0
Q ss_pred ecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe
Q 017358 146 NVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 225 (373)
Q Consensus 146 ~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~ 225 (373)
.+|++++|+.||++|++|++++||++++.++|+|+|+++|+++++.+.+++|.++||++|++||+++||++||.+|++|+
T Consensus 78 ~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~ 157 (306)
T PRK11857 78 REKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYD 157 (306)
T ss_pred eccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEe
Confidence 36899999999999999999999999999999999999999998776666799999999999999999999999999997
Q ss_pred C--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcc
Q 017358 226 G--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 303 (373)
Q Consensus 226 ~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~t 303 (373)
+ +.+++++++|||+||++++||++|||++++++|+.||+++++++.+++|+|+|+++|+.||||||||+|++|..+|+
T Consensus 158 ~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~t 237 (306)
T PRK11857 158 EATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGV 237 (306)
T ss_pred CCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCcccee
Confidence 4 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 304 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 304 pii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
|||||||+|||++|++.++|++.||++++|++|+|||+||||++||+++|+||++|+++||+|+.|++
T Consensus 238 piIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 238 PVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred cccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1e-47 Score=404.73 Aligned_cols=218 Identities=25% Similarity=0.371 Sum_probs=208.3
Q ss_pred ecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe
Q 017358 146 NVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 225 (373)
Q Consensus 146 ~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~ 225 (373)
.+||++++++||++|.+|+. +|+++...+||++.|++.|+.+|+.+.+..|.|+||+++++||+++||++||.+|++++
T Consensus 117 ~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy~ 195 (1228)
T PRK12270 117 VTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHYA 195 (1228)
T ss_pred eeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhceee
Confidence 36899999999999999976 99999999999999999999999988888999999999999999999999999999997
Q ss_pred --CCe--eEEcCCccEEEEEecC-----CCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCC
Q 017358 226 --GDD--IIYRDYIDISFAVGTK-----KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGV 296 (373)
Q Consensus 226 --~~~--i~~~d~inIgvAV~~~-----~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~ 296 (373)
+|+ ++++++||||+||+++ +||+||+|+++++++|.||.++++++++|||+|+|+++|++||||||||+|+
T Consensus 196 ~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G~ 275 (1228)
T PRK12270 196 EVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGG 275 (1228)
T ss_pred ccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCCc
Confidence 554 9999999999999998 5899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcceEEEeeeeEEEEEEe------CCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 297 YGSLLSTPIINPPQSAILGMHSIVNRPMVV------GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 297 ~G~~~~tpii~pp~~aIL~vG~i~~~pvv~------dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
+|..+|+||+||||+|||++|++...|++. +|++.++++|+||+|+|||+|||+++|+||+.|+++||
T Consensus 276 iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 276 IGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred ccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 999999999999999999999999877763 35899999999999999999999999999999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.96 E-value=1.3e-28 Score=228.61 Aligned_cols=181 Identities=11% Similarity=0.137 Sum_probs=157.0
Q ss_pred ceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCCC
Q 017358 167 FALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKG 246 (373)
Q Consensus 167 ~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~G 246 (373)
-|.|++|+++|+|+|+++.|+. +++|++.++||+++|+|++|+||.++.+|+++.||.+++++++..+++
T Consensus 30 ~~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~ 99 (219)
T PRK13757 30 QCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT 99 (219)
T ss_pred CCceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCC
Confidence 3459999999999999887653 789999999999999999999999999999999999999999998776
Q ss_pred eEEEEEecCcCCCHHHHHHHHHHHHHHhhcCC-CCccccCCCeEEEEeCCCCCCCCcccccCCC---cceEEEeeeeEEE
Q 017358 247 LVVPVIRNSERMNFAEIEKEISTLAKKANDGS-ISIDEMAGGTFTISNGGVYGSLLSTPIINPP---QSAILGMHSIVNR 322 (373)
Q Consensus 247 L~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~-l~~~d~~ggTftISnlG~~G~~~~tpii~pp---~~aIL~vG~i~~~ 322 (373)
...-.+.-....++.+|.+...+.++++++.+ +-++....+.|.||+++|+.+++++.-++.+ ..+++++||+.++
T Consensus 100 ~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~ 179 (219)
T PRK13757 100 ETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ 179 (219)
T ss_pred ceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE
Confidence 55567888999999999999988888888763 5444556789999999999999986655433 3589999999874
Q ss_pred EEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 323 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 323 pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+|+ .+||||+++||+++||+|+|+|+++||+++++
T Consensus 180 ----~gr----~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 180 ----GDK----VLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred ----CCE----EEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 554 48999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.96 E-value=5.3e-28 Score=223.08 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=138.8
Q ss_pred cceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCC-eeEEcCCccEEEEEecC
Q 017358 166 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGTK 244 (373)
Q Consensus 166 ~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~-~i~~~d~inIgvAV~~~ 244 (373)
..|++++|.++|+|+|+++.|+. +++|++.++|++++|+|++|+||.+++++ ++++||.++++++|..+
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence 57999999999999999887764 78999999999999999999999999886 99999999999999876
Q ss_pred CCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcC-CCCccc-cCCCeEEEEeCCCCCCCCcccccCCC---cceEEEeeee
Q 017358 245 KGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISIDE-MAGGTFTISNGGVYGSLLSTPIINPP---QSAILGMHSI 319 (373)
Q Consensus 245 ~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~~d-~~ggTftISnlG~~G~~~~tpii~pp---~~aIL~vG~i 319 (373)
++...-.+.-....++.+|.+...+.++++++. .+.+++ ...+.|.+|+++|+.+++++.-++.+ ..+++++||+
T Consensus 94 ~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~ 173 (206)
T PF00302_consen 94 DDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKY 173 (206)
T ss_dssp TTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--
T ss_pred CCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeee
Confidence 543445667788899999999999999988764 344443 45679999999999999986654443 3688999999
Q ss_pred EEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHH
Q 017358 320 VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIK 360 (373)
Q Consensus 320 ~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk 360 (373)
.++ +|+ ..||||+++||+++||+|+|+|+++||
T Consensus 174 ~~~----~gr----~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 174 FEE----NGR----LLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp EEE----TTE----EEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred EeE----CCE----EEEEEEEEEecccccHHHHHHHHHHhC
Confidence 985 565 489999999999999999999999987
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.90 E-value=6.1e-23 Score=184.43 Aligned_cols=186 Identities=10% Similarity=0.127 Sum_probs=161.5
Q ss_pred cceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCC
Q 017358 166 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 245 (373)
Q Consensus 166 ~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~ 245 (373)
..||+.++.+.|+|++..+.|+. +++|++.+++|+.+++++|+||+.++.+|+++++|.+++.++|.+++
T Consensus 27 ~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~ 96 (219)
T COG4845 27 QYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE 96 (219)
T ss_pred ccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence 48999999999999998887763 89999999999999999999999999999999999999999999988
Q ss_pred CeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCC-Ccccc-CCCeEEEEeCCCCCCCCcccccCCC---cceEEEeeeeE
Q 017358 246 GLVVPVIRNSERMNFAEIEKEISTLAKKANDGSI-SIDEM-AGGTFTISNGGVYGSLLSTPIINPP---QSAILGMHSIV 320 (373)
Q Consensus 246 GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l-~~~d~-~ggTftISnlG~~G~~~~tpii~pp---~~aIL~vG~i~ 320 (373)
+....++.-..+.++.+|++...+-+++++++.- .++|- ......+||++|+.+++++.-+... ..+|+.+|+..
T Consensus 97 ~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~ 176 (219)
T COG4845 97 TETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFY 176 (219)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeeccee
Confidence 8777788888999999999999888888887753 23332 2456778999999988876655532 35789999988
Q ss_pred EEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhh
Q 017358 321 NRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 369 (373)
Q Consensus 321 ~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~l 369 (373)
++ ||++ .||+++++||+.+||.|+++|++.||+++++|-.+
T Consensus 177 ~~----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 177 EE----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred cc----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 74 8887 79999999999999999999999999999998654
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.36 E-value=8.8e-13 Score=102.55 Aligned_cols=56 Identities=36% Similarity=0.766 Sum_probs=54.3
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
.++++|.+|..++++++.+|++++||.|++||+||++|+||+.++++||.+|++.+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~ 56 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKE 56 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEE
Confidence 47999999999999999999999999999999999999999999999999999987
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.33 E-value=1.8e-12 Score=127.62 Aligned_cols=58 Identities=36% Similarity=0.624 Sum_probs=56.1
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|..+++||++|++|+||+|.+|+|++||.|++||+|+++|+||+++||+||.+|+|.+
T Consensus 1 ~~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~ 58 (371)
T PRK14875 1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRR 58 (371)
T ss_pred CceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEE
Confidence 3579999999999999999999999999999999999999999999999999999987
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.06 E-value=2.1e-10 Score=91.00 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=41.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeec-CceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEt-dK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|++++||.|++||+|+++|| ||+++|++||.+|++.++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i 56 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESL 56 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEE
Confidence 48999999999999999999999999 999999999999999873
No 27
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.99 E-value=4.4e-10 Score=115.63 Aligned_cols=58 Identities=36% Similarity=0.657 Sum_probs=55.6
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|.++++||++|++|+||+|.+|++++||.|++||+++++||||+++|++||.+|++.+
T Consensus 1 M~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~ 58 (464)
T PRK11892 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGK 58 (464)
T ss_pred CCcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEE
Confidence 4469999999999999999999999999999999999999999999999999999976
No 28
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.92 E-value=1.5e-09 Score=114.86 Aligned_cols=58 Identities=45% Similarity=0.788 Sum_probs=55.8
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|.++++||++|++|+||+|.+|+|++||.|++||+|+++||||++++++||.+|++.+
T Consensus 1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~ 58 (590)
T TIGR02927 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILE 58 (590)
T ss_pred CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999987
No 29
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.92 E-value=2.3e-09 Score=82.47 Aligned_cols=54 Identities=35% Similarity=0.672 Sum_probs=51.9
Q ss_pred EEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 93 ~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
+.+|+++..+.+|.+.+|++++||.|++||+++++|++|+..++.||.+|++.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~ 55 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKK 55 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEE
Confidence 568999999999999999999999999999999999999999999999999986
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.85 E-value=3.5e-09 Score=113.12 Aligned_cols=56 Identities=32% Similarity=0.603 Sum_probs=53.8
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|..+|+||++| ++||+|.+|+|++||.|++||+|+++||||++++++||.+|+|.+
T Consensus 1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~ 56 (633)
T PRK11854 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKE 56 (633)
T ss_pred CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEE
Confidence 45689999999 999999999999999999999999999999999999999999987
No 31
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=98.79 E-value=8.9e-09 Score=79.28 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=42.0
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|++++||.|++||+++++|+||...+|.||.+|++.++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i 53 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKV 53 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEE
Confidence 48999999999999999999999999999999999999999874
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.69 E-value=2.3e-08 Score=105.28 Aligned_cols=57 Identities=37% Similarity=0.685 Sum_probs=54.9
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|.++++||++|+ +++|+|.+|++++||.|++||+|+++|+||+.+++.||.+|+|.+
T Consensus 1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~ 57 (547)
T PRK11855 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKE 57 (547)
T ss_pred CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEE
Confidence 457899999999 999999999999999999999999999999999999999999987
No 33
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.52 E-value=1.4e-07 Score=72.31 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=42.3
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeecc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVP 148 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~vp 148 (373)
-|+|.+|++++||.|++||+|+++|++|+.+++.+|.+|++.++.
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~ 53 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKIN 53 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEE
Confidence 489999999999999999999999999999999999999998743
No 34
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.49 E-value=1.5e-07 Score=98.96 Aligned_cols=55 Identities=33% Similarity=0.709 Sum_probs=52.7
Q ss_pred EEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 92 ~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+++||++|+. .+|+|.+|++++||.|++||+|+++|+||+..++.|+.+|++.++
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i 56 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEI 56 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEE
Confidence 6899999987 999999999999999999999999999999999999999999873
No 35
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.35 E-value=4.3e-07 Score=79.21 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=41.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
-|++.+.++++||+|++||+||.||.+|+.+||+||.+|+++++
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~I 121 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEI 121 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEE
Confidence 38899999999999999999999999999999999999999874
No 36
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.30 E-value=9.1e-07 Score=76.13 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=41.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i 112 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAI 112 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEE
Confidence 48999999999999999999999999999999999999999863
No 37
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.29 E-value=1.5e-06 Score=64.73 Aligned_cols=44 Identities=39% Similarity=0.662 Sum_probs=41.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
..|.+.+|++++|+.|++||+++++|++|...++.||.+|++..
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~ 49 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKE 49 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEE
Confidence 46899999999999999999999999999999999999999975
No 38
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.28 E-value=3.4e-06 Score=62.56 Aligned_cols=55 Identities=42% Similarity=0.758 Sum_probs=52.4
Q ss_pred EEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 92 ~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
++.+|+++....+|.+..|++..|+.+..|++++.+|+.|...++.+|.+|++.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~ 56 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAK 56 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999998764
No 39
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.26 E-value=1.2e-06 Score=77.48 Aligned_cols=44 Identities=20% Similarity=0.532 Sum_probs=41.7
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|++++||.|++||+++++|++|+..++.||.+|++.++
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i 135 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKI 135 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEE
Confidence 47899999999999999999999999999999999999999864
No 40
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.13 E-value=2.6e-06 Score=80.82 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=36.8
Q ss_pred EeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 110 w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|++++||.|++||+|++||+||+.++|+||.+|+|.++
T Consensus 218 w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eI 255 (274)
T PLN02983 218 PFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEI 255 (274)
T ss_pred ceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEE
Confidence 99999999999999999999999999999999999874
No 41
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.04 E-value=4.9e-06 Score=73.91 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=37.1
Q ss_pred EEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 109 ~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|++++||.|++||+||.||+||+..+|+|+.+|+|.++
T Consensus 100 ~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i 138 (156)
T TIGR00531 100 KPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEI 138 (156)
T ss_pred CccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEE
Confidence 499999999999999999999999999999999999873
No 42
>PRK07051 hypothetical protein; Validated
Probab=98.03 E-value=6.7e-06 Score=64.77 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=44.3
Q ss_pred eEEEEccCCCCCCCeeeEeE-------EeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 90 LVDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~-------w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..++..|..| ++.+ |++++||.|++||+++++|++|..+++.||.+|++.++
T Consensus 3 ~~~~~ap~~g------~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i 61 (80)
T PRK07051 3 QHEIVSPLPG------TFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEF 61 (80)
T ss_pred ccEEeCCCce------EEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEE
Confidence 3566666554 4555 99999999999999999999999999999999999763
No 43
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.01 E-value=5.9e-06 Score=87.56 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=42.0
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|+|++||.|++||+|+++|+||++.+|+||.+|+|.++
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i 576 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEI 576 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEE
Confidence 48999999999999999999999999999999999999999874
No 44
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.98 E-value=7.1e-06 Score=72.79 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=37.2
Q ss_pred EEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 109 ~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|++++||.|++||+||.||+||+..+|+||.+|+|.++
T Consensus 99 ~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i 137 (155)
T PRK06302 99 PPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEI 137 (155)
T ss_pred CcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEE
Confidence 499999999999999999999999999999999999873
No 45
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.95 E-value=8.7e-06 Score=86.31 Aligned_cols=44 Identities=20% Similarity=0.399 Sum_probs=41.8
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
-|+|.+|+|++||.|++||+|+++|+||++++|.||.+|+|.++
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i 568 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREI 568 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEE
Confidence 48899999999999999999999999999999999999999863
No 46
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.95 E-value=1.2e-05 Score=65.55 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=44.8
Q ss_pred eEEEEccCCCCCCCeeeEeE-EeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 90 LVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~-w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
...+=|-+.+..+ =|+|.. |++++|+.|++||++++||++|++.++.||.+|++.+
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~ 71 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVE 71 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEE
Confidence 4455555555444 345555 8888899999999999999999999999999999976
No 47
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.84 E-value=1.7e-05 Score=90.48 Aligned_cols=45 Identities=33% Similarity=0.578 Sum_probs=42.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
-.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i 1183 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKI 1183 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEE
Confidence 359999999999999999999999999999999999999999874
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.71 E-value=4.2e-05 Score=81.32 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=41.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|.|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i 575 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGI 575 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEE
Confidence 57899999999999999999999999999999999999999874
No 49
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.65 E-value=4.6e-05 Score=63.79 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=33.3
Q ss_pred ecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 112 ~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++|+.|++||++++||++|+..|+.||.+|+|.++
T Consensus 38 p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 367999999999999999999999999999999763
No 50
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.62 E-value=5.7e-05 Score=85.67 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=42.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|.|.+|++++||.|++||+|+++|+||+..+|+||.+|+|.++
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i 1125 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEV 1125 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEE
Confidence 358899999999999999999999999999999999999999874
No 51
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.54 E-value=8.5e-05 Score=62.58 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=32.7
Q ss_pred cCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 113 ~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
++|+.|++||++++||++|+..++.||.+|+|.++
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~v 75 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEV 75 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 66999999999999999999999999999999753
No 52
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.31 E-value=0.00025 Score=75.47 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=41.8
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i 573 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEI 573 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEE
Confidence 57899999999999999999999999999999999999999873
No 53
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.24 E-value=0.00039 Score=61.00 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=42.7
Q ss_pred EEEEccCCCCCCCeeeEeEEeec-CCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQ-PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~-~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..+=|-+.+.. .-|+|..+-.+ +|+.|++||+++.||++|+..++.||.+|+|.++
T Consensus 31 ~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 31 VTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred EEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 34444443332 23556666555 8999999999999999999999999999999863
No 54
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.12 E-value=0.00045 Score=78.68 Aligned_cols=45 Identities=29% Similarity=0.556 Sum_probs=42.4
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeecc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVP 148 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~vp 148 (373)
.|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++-
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~ 1128 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVL 1128 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEE
Confidence 488999999999999999999999999999999999999998743
No 55
>PRK01202 glycine cleavage system protein H; Provisional
Probab=96.91 E-value=0.00088 Score=57.51 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=33.4
Q ss_pred ecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 112 ~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++|+.|++||+++.||++|+..++.||.+|+|.++
T Consensus 45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 80 (127)
T PRK01202 45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEV 80 (127)
T ss_pred CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEE
Confidence 367999999999999999999999999999999864
No 56
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.81 E-value=0.0011 Score=56.95 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=34.0
Q ss_pred eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 111 ~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+.++|+.|++||+++.||+.|+..++.||.+|+|.++
T Consensus 43 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 43 LPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred cCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 3468999999999999999999999999999999864
No 57
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.47 E-value=0.0026 Score=45.58 Aligned_cols=30 Identities=10% Similarity=0.336 Sum_probs=26.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.+|++++||.|++||+|++++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 368999999999999999999999987653
No 58
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.11 E-value=0.0066 Score=51.74 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=30.8
Q ss_pred ecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 112 ~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++|+.+++|++++.||++|.+.++.||.+|+|.++
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~v 74 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEV 74 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEE
Confidence 466999999999999999999999999999999874
No 59
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.09 E-value=0.0057 Score=63.76 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=42.0
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|.|....|++|++|.+||+|+.+|.+|+...+.+|.+|+++++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v 626 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKL 626 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEE
Confidence 48999999999999999999999999999999999999999874
No 60
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=95.81 E-value=0.0073 Score=65.19 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=41.7
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
-|.|++..|+.||+|++||+|+.+|.+|+...|.||.+|++.++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v 1130 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEV 1130 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEE
Confidence 37899999999999999999999999999999999999999874
No 61
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.59 E-value=0.0093 Score=51.25 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=34.1
Q ss_pred eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 111 ~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+.++|+.|++|+.++.||+-|+..++.||.+|.+.++
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 5678899999999999999999999999999999873
No 62
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=95.15 E-value=0.021 Score=60.74 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=42.5
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeecc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVP 148 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~vp 148 (373)
.|+|.+..+++|++|++||+|+....+|+.+-|.||.+|+++++-
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~ 1158 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVH 1158 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEE
Confidence 489999999999999999999999999999999999999998753
No 63
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=94.43 E-value=0.062 Score=44.34 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=41.9
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++.+|- ...-|.-.+-.|++||.|++||.|++.+. -....+-||.+|+++.+
T Consensus 28 ~~v~ipL---~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 28 KKVVIPL---RQHIGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred CEEEEEC---cccCCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 4555553 23345567899999999999999999975 66889999999999874
No 64
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.73 E-value=0.067 Score=40.56 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.8
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.+|.|.+|++++||.|+.||+|+++|
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 68999999999999999999999987
No 65
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=93.27 E-value=0.075 Score=60.85 Aligned_cols=44 Identities=32% Similarity=0.554 Sum_probs=41.8
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
.-|++++|+|++|+.|.+||+=+|||.+|+.+.+.++.+|++.-
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~ 735 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQL 735 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEE
Confidence 56899999999999999999999999999999999999999865
No 66
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=92.33 E-value=4.7 Score=41.54 Aligned_cols=174 Identities=17% Similarity=0.203 Sum_probs=88.9
Q ss_pred EeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcC--cc-------ceEEE-eCCeeEEcC------Ccc
Q 017358 173 FNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQ--PV-------VNAVI-DGDDIIYRD------YID 236 (373)
Q Consensus 173 ~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~--P~-------~N~~i-~~~~i~~~d------~in 236 (373)
...++-+.+-++++..+++ ++|++.++..+++.|+.+. |. ++..+ .+.+-+.-+ ...
T Consensus 253 ~~~i~~~~~~~ll~~CR~~-------~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~~~ 325 (480)
T PF07247_consen 253 SLSISPEELKKLLKACRKH-------GTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDEYS 325 (480)
T ss_pred EEEECHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCcccccccccc
Confidence 4566666666666655432 8899999999999999963 21 11111 111111111 122
Q ss_pred EEEEEecCCC--eEEEEEec-CcCCCHHHHHHHHHHHHHH-hhcCC-C------------Cccc-----------cCCCe
Q 017358 237 ISFAVGTKKG--LVVPVIRN-SERMNFAEIEKEISTLAKK-ANDGS-I------------SIDE-----------MAGGT 288 (373)
Q Consensus 237 IgvAV~~~~G--L~vpvI~~-a~~~sl~eia~~~~~l~~~-ar~g~-l------------~~~d-----------~~ggT 288 (373)
.|..|...+- .+.++-.+ ....++-++++++++-+++ ..++. + ...| ..++|
T Consensus 326 ~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r~~t 405 (480)
T PF07247_consen 326 YGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPRRST 405 (480)
T ss_pred ceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCCCCc
Confidence 3433332211 11122111 1124567788877655444 33221 0 0011 23689
Q ss_pred EEEEeCCCCCCCCcc------cccCCCc---ceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHH-HHHHHH
Q 017358 289 FTISNGGVYGSLLST------PIINPPQ---SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREA-VFFLRR 358 (373)
Q Consensus 289 ftISnlG~~G~~~~t------pii~pp~---~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~a-arFl~~ 358 (373)
|.|||||.+...... -....++ .+.+.++-+. +.+| -|++++++=.-+++=.+. -.|++.
T Consensus 406 ~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS----~~~G------~L~i~~s~~~~~~~~~~~~~~~~~~ 475 (480)
T PF07247_consen 406 FEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIS----TKGG------GLNISISWQEGIVEDEEMEDEFMEL 475 (480)
T ss_pred EEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEE----cCCC------ceEEEEEEeCCcccccchHHHHHHH
Confidence 999999999741100 0111111 1122222221 1234 488999998888886666 488888
Q ss_pred HHHHh
Q 017358 359 IKDIV 363 (373)
Q Consensus 359 lk~~L 363 (373)
|++.|
T Consensus 476 ~~~~~ 480 (480)
T PF07247_consen 476 FKQNL 480 (480)
T ss_pred HHhhC
Confidence 88764
No 67
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=91.86 E-value=0.086 Score=54.62 Aligned_cols=43 Identities=26% Similarity=0.556 Sum_probs=40.6
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|.|.+.+|++||.|++||.++.+|.+|+..-+.+|-+|+++.+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v 652 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDV 652 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeE
Confidence 6889999999999999999999999999999999999999763
No 68
>PRK06748 hypothetical protein; Validated
Probab=91.80 E-value=0.22 Score=39.60 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=27.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|..|++|+.++.|-
T Consensus 49 ~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 49 ISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 56999999999999999999999999875
No 69
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=90.20 E-value=0.32 Score=42.96 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=33.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeE-EecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~e-i~sp~~G~l~~ 146 (373)
-||..+...+.+||+|.+||.++.+.|-|-.+- +.||.+|++.-
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~ 131 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVF 131 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEE
Confidence 367778899999999999999999999997765 89999998853
No 70
>COG3608 Predicted deacylase [General function prediction only]
Probab=89.91 E-value=0.38 Score=47.75 Aligned_cols=44 Identities=30% Similarity=0.529 Sum_probs=39.2
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeee---cCceeeEEecCCCceee
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE---TDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vE---tdK~~~ei~sp~~G~l~ 145 (373)
-+++-+++++++.||+|++||+++.+= ..+..+||.|+.+|++-
T Consensus 261 Ap~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~ 307 (331)
T COG3608 261 APAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIII 307 (331)
T ss_pred cCCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEE
Confidence 356778999999999999999999984 45899999999999985
No 71
>PRK07051 hypothetical protein; Validated
Probab=89.09 E-value=0.41 Score=37.44 Aligned_cols=27 Identities=33% Similarity=0.574 Sum_probs=24.9
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeee
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
-.+|+|.+|++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 357999999999999999999999985
No 72
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=89.03 E-value=0.54 Score=47.28 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=35.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeee----ecCceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI----ETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v----EtdK~~~ei~sp~~G~l~~ 146 (373)
..+-+.++.+++||.|++||+|++| ..+...+++.||.+|++--
T Consensus 295 p~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~ 342 (359)
T cd06250 295 PAGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA 342 (359)
T ss_pred CCCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE
Confidence 4577889999999999999999999 2233555579999999853
No 73
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.16 E-value=0.69 Score=45.30 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=37.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee---cCceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE---TDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE---tdK~~~ei~sp~~G~l~~ 146 (373)
..+-+.++++++||.|++||+|++|= ++....++.||.+|++--
T Consensus 235 ~~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~ 281 (298)
T cd06253 235 ETSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT 281 (298)
T ss_pred CCCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE
Confidence 45677899999999999999999993 356778999999999853
No 74
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=87.82 E-value=8.1 Score=39.29 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=84.7
Q ss_pred EEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCC------
Q 017358 172 TFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK------ 245 (373)
Q Consensus 172 ~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~------ 245 (373)
.+.++++..+.+..+. .+.|++++++-|++.|+.++ +..+ ++ ...+.+.+++.|+...
T Consensus 232 ~~~~~~~~~l~~~a~~----------~g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~~ 295 (446)
T TIGR02946 232 AAQSLPLADVKAVAKA----------FGVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDSE 295 (446)
T ss_pred EeeccCHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCCC
Confidence 3455666665444322 27899999999999999875 2221 11 1223366777775311
Q ss_pred -C----eEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCC-------------Ccc--------cc-C----CCeEEEEeC
Q 017358 246 -G----LVVPVIRNSERMNFAEIEKEISTLAKKANDGSI-------------SID--------EM-A----GGTFTISNG 294 (373)
Q Consensus 246 -G----L~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l-------------~~~--------d~-~----ggTftISnl 294 (373)
| .+...+. .+..+..+...++++....+++... -|. .. . .-++++||+
T Consensus 296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNv 374 (446)
T TIGR02946 296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNV 374 (446)
T ss_pred CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCC
Confidence 1 1111122 1223344444555555444544310 010 01 1 237899999
Q ss_pred CCCCCC---------CcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 295 GVYGSL---------LSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 295 G~~G~~---------~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
|..... ...++.++..-..++++-.. .+| .+.+++++|-.++.. ..+|.+.+++.+++
T Consensus 375 pg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~ 441 (446)
T TIGR02946 375 PGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YNG------QLDFGLLADRDAVPD--PQELADALEAALEE 441 (446)
T ss_pred CCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence 754321 12222221111112222111 123 588999999988873 77788888877765
No 75
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=87.47 E-value=0.74 Score=44.09 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=31.8
Q ss_pred EeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
+.+..++.||.|++||+|+.|+. .++.||.+|++.-
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG 209 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG 209 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE
Confidence 44569999999999999999976 6999999999975
No 76
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=86.58 E-value=0.53 Score=46.10 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=25.6
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCc
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
|.|.+++|++||.|++||+|++++.+.
T Consensus 25 G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 25 DRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred cEEEEEEccCCCEecCCcEEEEecCcH
Confidence 999999999999999999999998864
No 77
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=86.30 E-value=1.1 Score=43.48 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=35.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC--ceeeEEecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD--KVTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd--K~~~ei~sp~~G~l~ 145 (373)
..+-+.++.++.||.|++||+|++|..- ....++.||.+|+|.
T Consensus 225 ~~~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~ 269 (287)
T cd06251 225 PQGGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI 269 (287)
T ss_pred CCCeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE
Confidence 3456678899999999999999999441 234789999999985
No 78
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=86.22 E-value=1.1 Score=45.64 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.6
Q ss_pred CeeeEeEEe-ecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFL-KQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~-~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.+.+ +++||.|++||+|+++++
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 468999998 999999999999999984
No 79
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=85.72 E-value=0.79 Score=43.99 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=33.7
Q ss_pred eEEeecCCCeeecCCceeeeecCcee--eEEecCCCceeeecchhhHHHH
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDKVT--IDVASPQAGVIQNVPMTRLRKR 155 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK~~--~ei~sp~~G~l~~vpls~~rk~ 155 (373)
-+-+|++||+|++||+|++ ||-+ +-..||++|++.++- .+-||.
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~-RG~rR~ 86 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAIN-RGERRK 86 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEe-cCCCce
Confidence 4778999999999999996 5533 446899999998764 344444
No 80
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=85.54 E-value=0.66 Score=36.11 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+.-+--..++++.||.|++||+|++|=++.
T Consensus 27 ~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 27 PIDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp ---TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred ccCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 3455556799999999999999999995543
No 81
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=85.38 E-value=0.55 Score=45.40 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=22.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCcee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~ 133 (373)
..|.| +|++++||.|++||+|++++++...
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~ 57 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQ 57 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHH
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhh
Confidence 35999 9999999999999999999988654
No 82
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=85.25 E-value=24 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.5
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcChh
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 367 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~ 367 (373)
..+-+.+||-++||.-...|+++|.+..++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 45888999999999999999999999887754
No 83
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=84.74 E-value=1.3 Score=43.90 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=36.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec----CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt----dK~~~ei~sp~~G~l~~ 146 (373)
..+-+..+.++.||.|++||+|++|=. .....++.||.+|++--
T Consensus 261 p~~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~ 308 (325)
T TIGR02994 261 EDDGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA 308 (325)
T ss_pred CCCeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE
Confidence 446677899999999999999999943 34567899999999853
No 84
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=84.73 E-value=0.8 Score=44.81 Aligned_cols=31 Identities=10% Similarity=0.256 Sum_probs=27.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCcee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~ 133 (373)
..|.|.++++++||.|++||+|+++++....
T Consensus 49 ~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~~ 79 (334)
T TIGR00998 49 VSGSVIEVNVDDTDYVKQGDVLVRLDPTNAE 79 (334)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECchHHH
Confidence 4599999999999999999999999887543
No 85
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=84.51 E-value=0.84 Score=47.32 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=37.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|.-.+-+|++||+|+.||+|++.... ..+.+.||++|+|+.+
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I 79 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAI 79 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEE
Confidence 3455578999999999999999987655 4688999999999885
No 86
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=84.25 E-value=1.6 Score=42.35 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=36.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec--CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt--dK~~~ei~sp~~G~l~~ 146 (373)
..+-+.+++++.||.|++||+|++|=. .....++.||++|++--
T Consensus 229 p~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~ 274 (288)
T cd06254 229 PASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLY 274 (288)
T ss_pred CCCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEE
Confidence 356778999999999999999999921 34467899999999864
No 87
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=84.21 E-value=1.1 Score=33.99 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|+|.++++++||.|+.|++|++++
T Consensus 46 ~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 46 VAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 56999999999999999999999874
No 88
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=83.82 E-value=0.93 Score=34.81 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
.+|.|.++++++||.|+.|++|+.+
T Consensus 50 ~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 50 VSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999875
No 89
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=83.78 E-value=1.2 Score=38.80 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=28.7
Q ss_pred EccCCCCCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 94 VVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 94 ~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
||-.-=+.-..|+|.+.++++||.|+.||+|+.|+.
T Consensus 105 KmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 105 KMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred eccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 343332345689999999999999999999999873
No 90
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=83.73 E-value=1.7 Score=37.58 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=23.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
..|+|.+|++++||.|+.||+|+++
T Consensus 105 ~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 105 SAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 6799999999999999999999876
No 91
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=83.53 E-value=1.7 Score=42.80 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=36.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec----CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt----dK~~~ei~sp~~G~l~~ 146 (373)
..+-+..+.+++||.|++||+|++|-. ....-++.||.+|+|.-
T Consensus 250 ~~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~ 297 (316)
T cd06252 250 PHPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA 297 (316)
T ss_pred CCCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE
Confidence 456778899999999999999999833 34567899999999863
No 92
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=83.30 E-value=1.7 Score=42.32 Aligned_cols=42 Identities=17% Similarity=0.437 Sum_probs=34.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeee---ecCceeeEEecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI---ETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v---EtdK~~~ei~sp~~G~l~ 145 (373)
..+-+.++.+++||.|++||+|++| .++. ..++.||.+|+|-
T Consensus 237 p~~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~-~~~v~Ap~dGiV~ 281 (293)
T cd06255 237 IHGGLFEPSVPAGDTIPAGQPLGRVVDLYGAE-VLEASPPRDGIVI 281 (293)
T ss_pred CCCeEEEEecCCCCEecCCCEEEEEECCCCCc-eEEEEcCCCcEEE
Confidence 3567788999999999999999999 2222 4568999999885
No 93
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=83.17 E-value=0.94 Score=44.49 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=27.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.++++++||.|++||+|++++....
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~ 83 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRY 83 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence 569999999999999999999999988653
No 94
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.98 E-value=1.6 Score=37.76 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=39.1
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeE-EecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~e-i~sp~~G~l~ 145 (373)
-||-++......|++|.+||+++.+.|-|..+- +++|.+|++.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vv 141 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVV 141 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEE
Confidence 468888999999999999999999999998877 7999999875
No 95
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=82.92 E-value=1.1 Score=46.39 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=36.6
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeecc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVP 148 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~vp 148 (373)
-|.-.+-+|++||+|++||+|++-... ..+.+.||++|+|+.+.
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 355568899999999999999966555 46788999999999864
No 96
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=82.02 E-value=0.91 Score=36.16 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.4
Q ss_pred EeEEeecCCCeeecCCceeeeecC
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
=.+|++++|+.|++||+|++++.+
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEeC
Confidence 357999999999999999999864
No 97
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=80.93 E-value=1.1 Score=42.79 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=21.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.+.+|++||.|++||+|+++.....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~ 37 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTDY 37 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HHH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeecc
Confidence 469999999999999999999999986543
No 98
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=79.82 E-value=1.5 Score=42.25 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=26.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.++++++||.|++||+|+.++....
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~ 62 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDY 62 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHH
Confidence 458999999999999999999999987654
No 99
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=79.59 E-value=1.3 Score=43.59 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=26.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|+.++++.
T Consensus 50 ~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 50 VGGRLASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred cCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 45899999999999999999999998774
No 100
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=79.16 E-value=1.8 Score=38.48 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=25.2
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeee
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.-..|+|.+|+++.||.|+.||+|+++|
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 3467999999999999999999999885
No 101
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=79.07 E-value=1.5 Score=44.42 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.+.++++||.|++||+|++++...
T Consensus 68 v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 68 VSGSVTKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence 35899999999999999999999998764
No 102
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=78.91 E-value=1.8 Score=44.59 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=34.7
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|.-.+-.|++||.|+.||+|++.+ ......+.||.+|+++++
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i 81 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAI 81 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEe
Confidence 334578999999999999999983 335788999999999874
No 103
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=78.36 E-value=1.9 Score=38.16 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.8
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeee
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
-.+|+|.+|+++.|+.|..|++|+.++
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 467999999999999999999999885
No 104
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=77.85 E-value=1.8 Score=42.87 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=26.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.+.++++||.|++||+|++++.+..
T Consensus 55 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~ 84 (346)
T PRK10476 55 VGGRIVELAVTENQAVKKGDLLFRIDPRPY 84 (346)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECcHHH
Confidence 349999999999999999999999987653
No 105
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.71 E-value=1.9 Score=43.32 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=27.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCcee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~ 133 (373)
..|.|.+++|++||.|++||+|++++.....
T Consensus 50 ~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~~ 80 (423)
T TIGR01843 50 EGGIVREILVREGDRVKAGQVLVELDATDVE 80 (423)
T ss_pred CCcEEEEEEeCCCCEecCCCeEEEEccchhh
Confidence 4599999999999999999999999887654
No 106
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=77.66 E-value=16 Score=37.58 Aligned_cols=33 Identities=15% Similarity=0.451 Sum_probs=29.3
Q ss_pred EEEEEEEEcccccChHHHHHHHHHHHHHhcChh
Q 017358 335 MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 367 (373)
Q Consensus 335 ~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~ 367 (373)
...|.+.+||.+.||.-+..|.++|-+.|+.+.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999999998643
No 107
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=77.47 E-value=1.2 Score=39.59 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=33.8
Q ss_pred eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 111 ~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+-+.|-.|.+||.++.+|+=|+.-||-+|.+|.++++
T Consensus 87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEi 123 (172)
T KOG3373|consen 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEI 123 (172)
T ss_pred cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEe
Confidence 3467889999999999999999999999999999983
No 108
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=76.66 E-value=2 Score=43.28 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCCCCCCeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 97 FMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 97 ~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
.+... ..|.|.++++++||.|++||+|+.+++...
T Consensus 65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~ 99 (385)
T PRK09578 65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPL 99 (385)
T ss_pred EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHH
Confidence 34433 459999999999999999999999977643
No 109
>PF13437 HlyD_3: HlyD family secretion protein
Probab=76.43 E-value=4.3 Score=32.63 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=31.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC-c--eeeEEecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD-K--VTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd-K--~~~ei~sp~~G~l~ 145 (373)
..|.|..+.+++|+.|.+|++|++|... . +.+.++...-+.++
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~~~~~~~i~ 51 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDTDDLWVEAYVPEKDIARIK 51 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEccceEEEEEEEChHhhcceE
Confidence 4699999999999999999999999764 3 33334444445553
No 110
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=75.72 E-value=2.7 Score=43.78 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.1
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
-.+|+|.+|++++||.|..|++|+.+|.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 46799999999999999999999999654
No 111
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=74.76 E-value=2.7 Score=42.09 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.5
Q ss_pred EEeecCCCeeecCCceeeeecCc--eeeEEecCCCceeee
Q 017358 109 KFLKQPGDRVEMDEPIAQIETDK--VTIDVASPQAGVIQN 146 (373)
Q Consensus 109 ~w~~~~Gd~V~~gd~l~~vEtdK--~~~ei~sp~~G~l~~ 146 (373)
.-.|++||.|++|++++| || -.+-+.||++|+++.
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~a 78 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTA 78 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEE
Confidence 456899999999999986 55 456689999999987
No 112
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=74.44 E-value=2.6 Score=42.15 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|++++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~ 96 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 96 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 34999999999999999999999997653
No 113
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=73.32 E-value=3 Score=40.19 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=25.4
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeee
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.-.+|+|.+|++++||.|..||+|+++|
T Consensus 246 AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 246 ADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3468999999999999999999999986
No 114
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=72.27 E-value=3.3 Score=43.42 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=40.3
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
.++.+|--... |.=...+|++||+|.+||+|.+-|. ....+.||.+|++++
T Consensus 31 ~~~~iPl~qh~---g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~ 81 (529)
T COG4656 31 QRALIPLKQHI---GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTA 81 (529)
T ss_pred cceEEeeeccc---CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeee
Confidence 45566633222 2225789999999999999999888 888899999999988
No 115
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=71.73 E-value=3.6 Score=45.03 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=38.9
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++.+|-- ..-|.-.+-+|++||.|.+||+|++-+.. ..+.+.||.+|+|..|
T Consensus 35 ~~~~ipl~---qhiG~~~~~~V~~GD~V~~GQ~i~~~~~~-~s~~vhApvSG~V~~I 87 (695)
T PRK05035 35 QRLVIPLK---QHIGAEGELCVKVGDRVLKGQPLTQGDGR-MSLPVHAPTSGTVVAI 87 (695)
T ss_pred CEEEEECc---cCCCCCCcceeCcCCEEcCCCEeeecCCC-ceeEEeCCCCeEEeee
Confidence 45555522 22244467899999999999999966432 5688999999999873
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=71.70 E-value=3.2 Score=41.86 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.1
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.+.++++||.|++||+|++++...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~ 96 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence 46899999999999999999999998653
No 117
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=71.66 E-value=4.3 Score=29.38 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
..|.|..+++++|+.|++|++++.+
T Consensus 43 ~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 43 VAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999864
No 118
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=71.63 E-value=3.2 Score=41.63 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=25.1
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.++++++||.|+.|+.|+.|++
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecC
Confidence 458999999999999999999999988
No 119
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=71.42 E-value=3.4 Score=41.87 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.+.++++||.|++||+|++++...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 45999999999999999999999998654
No 120
>PRK09294 acyltransferase PapA5; Provisional
Probab=70.45 E-value=1.2e+02 Score=30.59 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=27.1
Q ss_pred CcCCCHHHHHHHHHHHHHHh-hcCCCC--ccc----cC------CCeEEEEeCCCCCC
Q 017358 255 SERMNFAEIEKEISTLAKKA-NDGSIS--IDE----MA------GGTFTISNGGVYGS 299 (373)
Q Consensus 255 a~~~sl~eia~~~~~l~~~a-r~g~l~--~~d----~~------ggTftISnlG~~G~ 299 (373)
....++.|+++++++..... ..+.+. ..+ +. ..++++||+|.++.
T Consensus 290 ~~~~sf~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 290 GPDTDIVDLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 34569999999988765533 222211 001 11 13789999999854
No 121
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=70.18 E-value=3.6 Score=41.98 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=27.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCcee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT 133 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~ 133 (373)
..|.|.+.++++||.|++||+|+.+++....
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~~ 95 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPELR 95 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHHHH
Confidence 5599999999999999999999999887543
No 122
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=69.55 E-value=3.9 Score=41.81 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=26.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|+++....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 56999999999999999999999998753
No 123
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=68.38 E-value=4.1 Score=34.88 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.6
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecC
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
+|+--++++++||+|++||+|+++--+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 577789999999999999999998544
No 124
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=66.26 E-value=4.7 Score=34.35 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=24.1
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 5667899999999999999999986543
No 125
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.05 E-value=4.8 Score=41.61 Aligned_cols=30 Identities=3% Similarity=0.110 Sum_probs=26.2
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+.|.|.+.+|++||.|++||+|+.+....
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 345999999999999999999999996654
No 126
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=65.35 E-value=6.1 Score=35.00 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=23.7
Q ss_pred CCeeeEeEEeecCCCeeecCCceeee
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
-..|+|.++++++||.|+.||+|+++
T Consensus 127 p~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 127 PKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 35799999999999999999999976
No 127
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=64.04 E-value=31 Score=36.00 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=26.9
Q ss_pred CCCeeeEeEEeecCCC-eeecCCceeeeecCc
Q 017358 101 SITDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd-~V~~gd~l~~vEtdK 131 (373)
...+|+|.++++++|+ .|+.|++|+.+|.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 4568999999999995 799999999997654
No 128
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=63.46 E-value=7.3 Score=27.76 Aligned_cols=24 Identities=46% Similarity=0.624 Sum_probs=21.4
Q ss_pred eeeEeEEeecCCCeeecCCceeee
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
.|.+.+++.++|+.+..|++++++
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 567889999999999999999874
No 129
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=61.96 E-value=6.3 Score=38.27 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred EeEEeecCCCeeecCCceeeeecCc
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
-..|++++||+|++||.|+++|.+-
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G~a 89 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEGPA 89 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEeccH
Confidence 3589999999999999999998764
No 130
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=61.63 E-value=8.2 Score=37.67 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=26.8
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|+|.+.++++||.|+.|++|+.++.++
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999998765
No 131
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=61.09 E-value=8.9 Score=28.72 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=22.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
.+|+|.+++++.|+.+..|++++.+
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4799999999999999999999864
No 132
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=60.18 E-value=8.8 Score=39.54 Aligned_cols=30 Identities=30% Similarity=0.655 Sum_probs=26.3
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.-.+|+|.++++++||.|..|++|+.+|++
T Consensus 92 Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 92 APASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred cCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 346799999999999999999999998653
No 133
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=59.73 E-value=7.8 Score=37.09 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=26.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.+.++++||.|++||+++.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 679999999999999999999999998
No 134
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=58.98 E-value=9.8 Score=39.01 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=26.9
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.-.+|.|.++++++||.|..|++|+++|.+
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 346899999999999999999999999765
No 135
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=58.15 E-value=4.1 Score=35.19 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=21.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--++++++||+|++||+|+++--++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 6777899999999999999999986554
No 136
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=57.85 E-value=11 Score=38.74 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=26.8
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
...+|.|.++++++|+.|..|++++.+|.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 456899999999999999999999999754
No 137
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=57.64 E-value=11 Score=38.82 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=26.4
Q ss_pred CCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 100 ~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+...+|.|.+|++++||.|..|++|++++.
T Consensus 45 ~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 74 (416)
T PLN02528 45 TSRYKGKVAQINFSPGDIVKVGETLLKIMV 74 (416)
T ss_pred ecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 345789999999999999999999999863
No 138
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=57.61 E-value=8.2 Score=34.81 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.5
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--++++++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 5777899999999999999999986554
No 139
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=56.26 E-value=11 Score=38.32 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=27.6
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 459999999999999999999999998865
No 140
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=54.48 E-value=14 Score=37.96 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 569999999999999999999999998865
No 141
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=54.42 E-value=15 Score=36.96 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=26.1
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcCh
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVEDP 366 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~P 366 (373)
+-|+++++|.++||.-+..|++.|.+.+...
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 5599999999999999999999999988653
No 142
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.56 E-value=12 Score=36.33 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+|++++|+.|++||+|++++.+-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~~ 89 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGPV 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEECH
Confidence 699999999999999999998764
No 143
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=51.05 E-value=19 Score=36.93 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=27.8
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 559999999999999999999999998875
No 144
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.88 E-value=16 Score=35.31 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.4
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
++--.+|++++|+.|++||+++++|.+-.
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G~~~ 84 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEGPAR 84 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEECHH
Confidence 34456899999999999999999987643
No 145
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.25 E-value=15 Score=35.86 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.8
Q ss_pred EeEEeecCCCeeecCCceeeeecCce
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
-.+|++++|+.|++||+|++++.+-.
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~a~ 91 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGPAR 91 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEecHH
Confidence 46999999999999999999987643
No 146
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.06 E-value=15 Score=35.74 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=22.1
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+|++++|+.|++||+|++++.+-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~~ 91 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGPA 91 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEcH
Confidence 799999999999999999998764
No 147
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=47.01 E-value=16 Score=35.72 Aligned_cols=25 Identities=4% Similarity=0.057 Sum_probs=22.0
Q ss_pred EeEEeecCCCeeecCCceeeeecCc
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
=.+|++++|+.|++|+++++++.+-
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G~a 86 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQGNA 86 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEeCH
Confidence 3699999999999999999887653
No 148
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=46.55 E-value=16 Score=35.40 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.4
Q ss_pred eEeEEeecCCCeeecCCceeeeecCc
Q 017358 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 106 ~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
--++|++++|+.|++||++++++.+=
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~~ 81 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGPA 81 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEcH
Confidence 33689999999999999999998763
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=46.23 E-value=17 Score=39.20 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=24.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|+|.+|++++||.|+.||+|+++|
T Consensus 566 ~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 566 VDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 67999999999999999999999986
No 150
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=46.04 E-value=24 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=27.5
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 559999999999999999999999998764
No 151
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=45.67 E-value=23 Score=36.66 Aligned_cols=39 Identities=46% Similarity=0.742 Sum_probs=38.3
Q ss_pred EEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 93 ~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
++||++|++|+||+|.+|++++||.|++||++|+|||||
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK 40 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDK 40 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecc
Confidence 689999999999999999999999999999999999999
No 152
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.55 E-value=17 Score=35.69 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.1
Q ss_pred EeEEeecCCCeeecCCceeeeecCc
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
-.+|++++|+.|++|+++++++.+-
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G~a 107 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEGPA 107 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEeCH
Confidence 3699999999999999999987654
No 153
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.51 E-value=17 Score=34.98 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.0
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCc
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+-=.+|++++|+.|++||+++++|.+=
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G~~ 82 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEGPA 82 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEcH
Confidence 334589999999999999999998764
No 154
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.36 E-value=17 Score=35.58 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.7
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+|++++|+.|++||++++++.+-
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G~a 97 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEGPL 97 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEEcH
Confidence 579999999999999999998764
No 155
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=45.16 E-value=29 Score=33.22 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=33.2
Q ss_pred CeeeEeEEeecCCCeeecCCce--eee--ecCceeeEEecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPI--AQI--ETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l--~~v--EtdK~~~ei~sp~~G~l~ 145 (373)
..+-+..+.++.||.|++||++ ..+ ..+-...++.+|.+|++-
T Consensus 226 ~~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii 272 (292)
T PF04952_consen 226 PAGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII 272 (292)
T ss_dssp SSSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE
T ss_pred CccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE
Confidence 3456679999999999999999 544 222345689999999885
No 156
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=44.88 E-value=23 Score=36.35 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=27.1
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.-.+|+|.+.++++||.|..|++|+.++++
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 346799999999999999999999999885
No 157
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.32 E-value=18 Score=35.56 Aligned_cols=26 Identities=8% Similarity=0.219 Sum_probs=22.8
Q ss_pred eEEeecCCCeeecCCceeeeecCcee
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDKVT 133 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK~~ 133 (373)
.+|++++|+.|++||+|++++.+-..
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~a~~ 112 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGPARV 112 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEECHHH
Confidence 68999999999999999999876433
No 158
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=44.11 E-value=21 Score=38.53 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
.+|+|.++++++||.|+.|++|+++|.
T Consensus 569 ~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 569 ANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 468899999999999999999999974
No 159
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=44.03 E-value=18 Score=32.25 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--+-++++||+|++||+|+++--|.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 5778899999999999999999987665
No 160
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=43.32 E-value=20 Score=34.95 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=22.8
Q ss_pred eEeEEeecCCCeeecCCceeeeecCc
Q 017358 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 106 ~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
--.+|++++|+.|++|++|++++.+-
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G~a 85 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKGSA 85 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEecH
Confidence 34699999999999999999998764
No 161
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.87 E-value=20 Score=35.16 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=22.7
Q ss_pred EeEEeecCCCeeecCCceeeeecCce
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
-.+|++++|+.|++||++++++.+-.
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~a~ 102 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAPTR 102 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEECHH
Confidence 35899999999999999999987643
No 162
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.35 E-value=20 Score=34.75 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.0
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+|++++|+.|++||+|++++.+-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G~a 83 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEGDF 83 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEECH
Confidence 699999999999999999998764
No 163
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.09 E-value=21 Score=34.80 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.8
Q ss_pred eEeEEeecCCCeeecCCceeeeecCc
Q 017358 106 TLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 106 ~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
--.+|++++|+.|++||++++++.+-
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G~a 95 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISGPA 95 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEECH
Confidence 44699999999999999999998763
No 164
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.73 E-value=21 Score=35.24 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=21.9
Q ss_pred EeEEeecCCCeeecCCceeeeecCc
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
-++|++++|+.|++|+++++++.+-
T Consensus 79 ~v~~~~~dG~~v~~G~~i~~v~G~a 103 (308)
T PLN02716 79 KVEWAAIDGDFVHKGLKFGKVTGPA 103 (308)
T ss_pred EEEEEeCCCCEecCCCEEEEEEECH
Confidence 3579999999999999999998764
No 165
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.37 E-value=21 Score=34.71 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred EeEEeecCCCeeecCCceeeeecCc
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
-.+|++++|+.|++|++|++++.+-
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~G~~ 83 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELKGNA 83 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEEECH
Confidence 3689999999999999999998764
No 166
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=41.16 E-value=22 Score=34.24 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.5
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
++|++++|+.|++||++++++.+-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G~~ 79 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEGPA 79 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEEcH
Confidence 489999999999999999998764
No 167
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=39.16 E-value=22 Score=36.82 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCCeeeEeEEeecCCCeeecCCceeeee
Q 017358 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 100 ~~~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
+.+..+--..++++.||+|++||+|+.|=
T Consensus 374 d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 374 DTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34555666799999999999999999986
No 168
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=36.09 E-value=35 Score=34.81 Aligned_cols=28 Identities=43% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
-.+|.|.++++++|+.|..|++|+.++.
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~ 78 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEE 78 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEec
Confidence 4679999999999999999999998863
No 169
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=36.07 E-value=29 Score=36.55 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 98 ~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+|--+..+--..++++.||+|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 45567777778999999999999999999853
No 170
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=35.56 E-value=27 Score=36.21 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 100 ~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+-+..+--.+++++.||.|++||+|+.|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 445666667999999999999999999863
No 171
>PRK04350 thymidine phosphorylase; Provisional
Probab=34.14 E-value=32 Score=36.17 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCCCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 98 ~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+|--+..+--..++++.||+|++||+|+.|=.
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 45567777778999999999999999999863
No 172
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=33.67 E-value=45 Score=39.10 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.8
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeee
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
-.+|+|.+.++++||.|+.||+|+.+|
T Consensus 1175 p~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1175 PVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 457999999999999999999999986
No 173
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=32.97 E-value=33 Score=36.14 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCCCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 98 MGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 98 ~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+|-.+..+--..++++.||+|++||+|+.|=+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 45567777778999999999999999999853
No 174
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=32.79 E-value=33 Score=35.23 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
+..+--..++++.||+|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 56666679999999999999999998643
No 175
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=32.62 E-value=46 Score=33.51 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=29.1
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
..-.+|+.+ |.|.+.+++..+.|++||+|+.+.-.
T Consensus 53 vv~Iap~Vs-----G~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVS-----GRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCc-----eEEEEEEecCCCEecCCCeEEEECcH
Confidence 334567664 89999999999999999999999654
No 176
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=32.61 E-value=42 Score=35.80 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.8
Q ss_pred CCCeeeEeEEeecCCC-eeecCCceeee
Q 017358 101 SITDGTLAKFLKQPGD-RVEMDEPIAQI 127 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd-~V~~gd~l~~v 127 (373)
...+|.|.++++++|+ .|..|++|+.+
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 3467999999999996 79999999877
No 177
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=31.88 E-value=38 Score=39.47 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=24.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.+|+|.++++++||.|+.||+|+++|
T Consensus 1118 ~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1118 KDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 57999999999999999999999986
No 178
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=31.79 E-value=42 Score=33.82 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.3
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCc
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..+..|++++|+.|.+||+|++||..=
T Consensus 70 ~~~~i~a~~eG~~v~~gepvl~i~G~~ 96 (352)
T PRK07188 70 SKLKIRYLKDGDIINPFETVLEIEGPY 96 (352)
T ss_pred cceEEEEcCCCCEecCCCEEEEEEEcH
Confidence 346789999999999999999998763
No 179
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=30.44 E-value=41 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.2
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
++++ |++++|+.|.+|++++++|.+=
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~~ 94 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGPY 94 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEcH
Confidence 3454 9999999999999999998764
No 180
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=30.24 E-value=41 Score=34.88 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+..+--..++++.||+|++||+|+.|=.|+
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 456666799999999999999999987554
No 181
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=29.87 E-value=87 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 017358 154 KRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSAL 214 (373)
Q Consensus 154 k~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al 214 (373)
+.+++-+..=....|.|...-.+|+...-+..+++++.+++....+++...+.+|.+.+.+
T Consensus 28 ~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~~~~~~~~~~Ip~~~~~~W~lI~~~ 88 (90)
T PF02337_consen 28 KDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEELKRYYAEQGPEKIPIQAFPIWSLIRDC 88 (90)
T ss_dssp HHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHHHHHHHHCSTTTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Confidence 3445555555566899999999999999999999988776667789999999888888765
No 182
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=28.94 E-value=48 Score=26.09 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=18.8
Q ss_pred eeEeEEeecCCCeeecCCceeeeecC
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
+-+.+-.+++||.|++||.|..+-..
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred eccccccceecccccCCCEEEecCCC
Confidence 44555568999999999999999743
No 183
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.53 E-value=46 Score=32.66 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=22.8
Q ss_pred eEeEEee--cCCCeeecCCceeeeecCce
Q 017358 106 TLAKFLK--QPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 106 ~i~~w~~--~~Gd~V~~gd~l~~vEtdK~ 132 (373)
.-.+|++ ++|+.+++|++|++++.+-.
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G~a~ 99 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIGSVR 99 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEECHH
Confidence 3458898 99999999999999987643
No 184
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=28.06 E-value=30 Score=32.76 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=26.6
Q ss_pred eEEeecCCCeeecCCceeeeecCceeeEE
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDV 136 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei 136 (373)
..|++.+|..+++=+..|.||.||+.++.
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D~ 208 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSIDD 208 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccch
Confidence 46999999999999999999999998873
No 185
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=27.60 E-value=47 Score=34.17 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCeeeEeEEeecCCCeeecCCceeeeec
Q 017358 102 ITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 102 ~~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+..+--...+++.||.|++||+|+.+=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5666667899999999999999999976
No 186
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.48 E-value=52 Score=35.49 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=23.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
..|+|.++++++||.|+.||+|+++
T Consensus 568 ~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 568 QAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEe
Confidence 5799999999999999999999986
No 187
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=27.39 E-value=30 Score=37.37 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.1
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
-+|+--+.++++||+|++||+|+++.-|+
T Consensus 541 l~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 541 LNGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred cCCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 36777899999999999999999996654
No 188
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.82 E-value=82 Score=30.58 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.9
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
...++-|. .|.|.+..+.+|+.|.+|++++.+...
T Consensus 204 ~~~I~AP~------~G~V~~~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 204 RTVIRAPF------DGYVARRFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred CcEEEcCC------CcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence 35677774 589999999999999999999998544
No 189
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=26.42 E-value=32 Score=37.35 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.6
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--+.++++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 5677799999999999999999997664
No 190
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=25.91 E-value=2.8e+02 Score=22.04 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=26.7
Q ss_pred hcCCccchHHHHHH-HHHHHHhcCccceEEEeCCeeEEcCCccEEE
Q 017358 195 KHGVKLGLMSGFVK-AAVSALQHQPVVNAVIDGDDIIYRDYIDISF 239 (373)
Q Consensus 195 ~~g~klS~~~~lik-Ava~Al~~~P~~N~~i~~~~i~~~d~inIgv 239 (373)
..|.++|.-.--++ ++.++ +|+ .+|+|+.|+.++.|-|.=
T Consensus 27 ~~~~~vs~egQ~lF~~l~Kt---~~d--v~W~g~~IiV~d~V~I~p 67 (91)
T PF09793_consen 27 SIGPGVSPEGQKLFDALSKT---IPD--VRWDGKNIIVLDEVKISP 67 (91)
T ss_pred hcCCCcCHHHHHHHHHHHhh---CCC--CEECCCeEEEeCceEEcC
Confidence 35677776554433 55555 443 789999999999776653
No 191
>PRK12999 pyruvate carboxylase; Reviewed
Probab=25.79 E-value=57 Score=38.07 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=24.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|+|.++++++||.|+.||+|+++|
T Consensus 1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 57999999999999999999999987
No 192
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=24.78 E-value=1.1e+02 Score=28.43 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|..+.+.+|+.|..|++++.+-.
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 458999999999999999999998743
No 193
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=23.80 E-value=39 Score=36.87 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.1
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
+|+--+.++++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 67778999999999999999999976653
No 194
>PRK12784 hypothetical protein; Provisional
Probab=23.78 E-value=93 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=25.3
Q ss_pred eeEeEEeecCCCeeecCCceeeeecCc
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
|.|....+.+||+|..|-.++.+|.|-
T Consensus 52 G~I~~v~Ve~Gq~i~~dtlL~~~edDl 78 (84)
T PRK12784 52 GNIRLVNVVVGQQIHTDTLLVRLEDDL 78 (84)
T ss_pred eeEEEEEeecCceecCCcEEEEEeece
Confidence 889999999999999999999999885
No 195
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=23.01 E-value=64 Score=34.58 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=24.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|+|.+..+++||+|..|++|+++|
T Consensus 619 ~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 619 RDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred cCcEEEEEEecCCCccccCceEEEec
Confidence 57899999999999999999999986
No 196
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=22.52 E-value=2.7e+02 Score=19.65 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=32.2
Q ss_pred cceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccce
Q 017358 166 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 221 (373)
Q Consensus 166 ~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N 221 (373)
+.|+|++-..-++-+.++.+.+. .+-|++.-++.++-.++.+...++
T Consensus 3 ~~~~f~lRlP~~l~~~lk~~A~~---------~gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 3 KDPQFNLRLPEELKEKLKERAEE---------NGRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CSEEEEEECEHHHHHHHHHHHHH---------TTS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCceeeECCHHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHhccccCC
Confidence 56788887776655544443332 256899999999999999876554
No 197
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=22.36 E-value=76 Score=32.23 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=26.8
Q ss_pred CeeeEeEE-------eecCCCeeecCCceeeeecCceeeEEecCCCceee
Q 017358 103 TDGTLAKF-------LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w-------~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~ 145 (373)
.+|.|.+. +|++||.|++||+|..=.-+.-.-+.+.+.+|.+.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~v~A~G~V~ 245 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQEVHADGDVK 245 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceEECCcEEEE
Confidence 45667654 68999999999998754333222223344556553
No 198
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=22.06 E-value=82 Score=37.36 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=32.4
Q ss_pred EEeecCCCeeecCCceeeee--------cCceeeEEecCCCceeee
Q 017358 109 KFLKQPGDRVEMDEPIAQIE--------TDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 109 ~w~~~~Gd~V~~gd~l~~vE--------tdK~~~ei~sp~~G~l~~ 146 (373)
..+|+.|+.|++||+|+|+. ++|+..+|-|..+|.+.-
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~ 450 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHW 450 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEc
Confidence 35799999999999999995 467778999999998754
No 199
>PRK09294 acyltransferase PapA5; Provisional
Probab=21.21 E-value=81 Score=31.74 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.5
Q ss_pred EEEEEcccccChHHHHHHHHHHHHHh
Q 017358 338 IALTYDHRLIDGREAVFFLRRIKDIV 363 (373)
Q Consensus 338 lslt~DHRvvDGa~aarFl~~lk~~L 363 (373)
+.+.+||-++||..+..|+++|.++.
T Consensus 113 l~l~~hH~i~DG~S~~~ll~el~~~Y 138 (416)
T PRK09294 113 VTLYIHHSIADAHHSASLLDELWSRY 138 (416)
T ss_pred EEEEeccEeEccccHHHHHHHHHHHH
Confidence 67889999999999999999998755
No 200
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=21.05 E-value=78 Score=30.23 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.2
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+....|.+++|+.+++||++++||..=
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G~~ 75 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEGPA 75 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEEcH
Confidence 3567799999999999999999998764
No 201
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=20.45 E-value=90 Score=24.65 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=26.2
Q ss_pred EEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 338 IALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 338 lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
..+.+|-|+.++....++.+.+++.+++
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 7788999999999999999999999986
Done!