Query 017358
Match_columns 373
No_of_seqs 266 out of 1583
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 8.5E-74 2.9E-78 578.8 0.0 284 89-373 1-428 (428)
2 1scz_A E2, dihydrolipoamide su 100.0 2.2E-64 7.5E-69 472.7 25.0 228 146-373 6-233 (233)
3 3mae_A 2-oxoisovalerate dehydr 100.0 9.5E-64 3.2E-68 473.7 24.4 228 144-371 18-245 (256)
4 1dpb_A Dihydrolipoyl-transacet 100.0 1.3E-62 4.4E-67 463.3 26.7 230 141-371 12-243 (243)
5 3l60_A Branched-chain alpha-ke 100.0 1.3E-62 4.5E-67 464.4 25.2 220 148-372 18-241 (250)
6 2ii3_A Lipoamide acyltransfera 100.0 1.8E-61 6E-66 459.9 24.4 227 144-372 31-260 (262)
7 3rqc_A Probable lipoamide acyl 100.0 3E-61 1E-65 448.9 20.2 219 142-373 4-224 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 4.7E-62 1.6E-66 458.6 13.5 228 142-371 10-239 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 3.6E-48 1.2E-52 428.3 17.4 210 159-369 1-225 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 1.6E-45 5.4E-50 341.9 24.2 193 153-367 18-216 (219)
11 3cla_A Type III chloramphenico 100.0 4E-45 1.4E-49 337.9 25.0 182 165-365 23-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 2.9E-43 9.9E-48 326.1 23.0 180 165-363 25-216 (217)
13 2dnc_A Pyruvate dehydrogenase 99.4 4.8E-13 1.6E-17 108.5 7.8 62 86-147 3-64 (98)
14 2dne_A Dihydrolipoyllysine-res 99.4 5.2E-13 1.8E-17 110.2 7.7 62 86-147 3-64 (108)
15 3crk_C Dihydrolipoyllysine-res 99.4 1.1E-12 3.8E-17 103.7 8.2 60 88-147 3-62 (87)
16 1y8o_B Dihydrolipoyllysine-res 99.4 9.3E-13 3.2E-17 111.8 8.2 63 85-147 22-84 (128)
17 1k8m_A E2 component of branche 99.3 1.5E-12 5.3E-17 104.4 6.9 59 89-147 3-61 (93)
18 1zy8_K Pyruvate dehydrogenase 99.3 1.6E-13 5.5E-18 127.6 0.0 60 88-147 1-60 (229)
19 1pmr_A Dihydrolipoyl succinylt 99.3 9.2E-13 3.2E-17 102.4 2.5 58 89-146 1-58 (80)
20 1ghj_A E2, E2, the dihydrolipo 99.2 1E-11 3.5E-16 96.1 6.4 57 91-147 2-58 (79)
21 2l5t_A Lipoamide acyltransfera 99.1 4.6E-11 1.6E-15 91.9 6.0 57 91-147 2-58 (77)
22 1qjo_A Dihydrolipoamide acetyl 99.1 5.5E-11 1.9E-15 92.0 6.4 57 89-147 1-57 (80)
23 1gjx_A Pyruvate dehydrogenase; 99.0 1.6E-10 5.6E-15 89.6 5.5 56 90-146 2-57 (81)
24 1iyu_A E2P, dihydrolipoamide a 99.0 4.1E-10 1.4E-14 87.0 6.7 54 91-147 2-55 (79)
25 2k7v_A Dihydrolipoyllysine-res 98.7 2.2E-09 7.5E-14 84.2 1.4 53 89-147 1-53 (85)
26 2kcc_A Acetyl-COA carboxylase 98.5 9.6E-08 3.3E-12 74.7 4.6 45 103-147 12-56 (84)
27 2jku_A Propionyl-COA carboxyla 98.5 6E-08 2.1E-12 77.5 3.4 60 88-147 13-76 (94)
28 1z6h_A Biotin/lipoyl attachmen 98.4 4.7E-07 1.6E-11 67.9 5.4 45 103-147 6-50 (72)
29 2dn8_A Acetyl-COA carboxylase 98.3 5.6E-07 1.9E-11 72.5 4.8 43 103-145 24-66 (100)
30 2d5d_A Methylmalonyl-COA decar 98.2 1.7E-06 5.7E-11 65.1 5.4 45 103-147 12-56 (74)
31 1dcz_A Transcarboxylase 1.3S s 98.1 2.5E-06 8.5E-11 64.8 5.3 45 103-147 15-59 (77)
32 1bdo_A Acetyl-COA carboxylase; 98.1 1.1E-06 3.9E-11 67.4 2.8 41 107-147 22-62 (80)
33 2ejm_A Methylcrotonoyl-COA car 98.0 4E-06 1.4E-10 67.4 5.0 45 103-147 21-65 (99)
34 3n6r_A Propionyl-COA carboxyla 98.0 4.3E-06 1.5E-10 88.9 5.5 45 103-147 619-663 (681)
35 3va7_A KLLA0E08119P; carboxyla 97.9 5.4E-06 1.9E-10 93.3 5.3 44 104-147 1175-1218(1236)
36 1zko_A Glycine cleavage system 97.8 1.3E-05 4.6E-10 68.3 4.9 52 91-147 37-88 (136)
37 3u9t_A MCC alpha, methylcroton 97.8 2.4E-06 8.4E-11 90.7 0.0 45 103-147 609-653 (675)
38 1hpc_A H protein of the glycin 97.8 1.7E-05 5.9E-10 67.2 5.0 52 91-147 28-79 (131)
39 3hbl_A Pyruvate carboxylase; T 97.8 1.6E-05 5.4E-10 89.0 5.5 44 104-147 1085-1128(1150)
40 1onl_A Glycine cleavage system 97.8 2.4E-05 8.2E-10 66.0 5.0 52 91-147 28-79 (128)
41 3a7l_A H-protein, glycine clea 97.7 2.5E-05 8.5E-10 66.0 4.9 52 91-147 29-80 (128)
42 3bg3_A Pyruvate carboxylase, m 97.5 5.5E-05 1.9E-09 80.6 4.6 44 104-147 657-700 (718)
43 2qf7_A Pyruvate carboxylase pr 97.3 0.00011 3.7E-09 82.4 4.2 44 104-147 1103-1146(1165)
44 2k32_A A; NMR {Campylobacter j 97.2 0.00024 8.3E-09 58.1 4.2 46 103-148 8-82 (116)
45 3klr_A Glycine cleavage system 97.0 0.00065 2.2E-08 56.9 4.9 43 105-147 32-75 (125)
46 3mxu_A Glycine cleavage system 96.9 0.00099 3.4E-08 57.0 4.9 43 105-147 54-97 (143)
47 3tzu_A GCVH, glycine cleavage 96.8 0.00079 2.7E-08 57.3 3.5 43 105-147 49-92 (137)
48 3hgb_A Glycine cleavage system 96.5 0.0019 6.4E-08 56.0 4.1 43 105-147 59-102 (155)
49 3lnn_A Membrane fusion protein 92.2 0.12 4.1E-06 49.6 4.8 29 103-131 64-92 (359)
50 3na6_A Succinylglutamate desuc 91.9 0.14 4.9E-06 49.3 4.9 44 103-146 263-310 (331)
51 3fpp_A Macrolide-specific effl 91.7 0.094 3.2E-06 50.0 3.3 28 103-130 38-65 (341)
52 3fmc_A Putative succinylglutam 91.2 0.18 6.3E-06 49.4 4.9 44 103-146 296-345 (368)
53 3ne5_B Cation efflux system pr 90.8 0.25 8.7E-06 48.8 5.5 27 103-129 128-155 (413)
54 3cdx_A Succinylglutamatedesucc 90.6 0.23 8E-06 48.2 4.9 43 104-146 274-320 (354)
55 3d4r_A Domain of unknown funct 87.7 0.46 1.6E-05 41.3 4.0 43 104-146 108-151 (169)
56 2f1m_A Acriflavine resistance 86.3 0.38 1.3E-05 44.4 3.0 30 103-132 29-58 (277)
57 2l5t_A Lipoamide acyltransfera 85.9 0.56 1.9E-05 34.7 3.3 27 103-129 51-77 (77)
58 1ghj_A E2, E2, the dihydrolipo 83.3 0.81 2.8E-05 34.0 3.1 27 104-130 52-78 (79)
59 1qjo_A Dihydrolipoamide acetyl 82.8 0.81 2.8E-05 34.0 2.9 35 90-130 43-77 (80)
60 1z6h_A Biotin/lipoyl attachmen 82.3 0.84 2.9E-05 33.0 2.8 28 103-130 43-70 (72)
61 2qj8_A MLR6093 protein; struct 82.1 1.3 4.5E-05 42.3 4.9 44 103-146 263-310 (332)
62 3crk_C Dihydrolipoyllysine-res 82.1 0.82 2.8E-05 34.9 2.8 29 103-131 55-84 (87)
63 1k8m_A E2 component of branche 81.2 1.2 4E-05 34.6 3.4 29 103-131 54-82 (93)
64 2dn8_A Acetyl-COA carboxylase 80.7 0.96 3.3E-05 35.5 2.8 38 104-142 62-100 (100)
65 1bdo_A Acetyl-COA carboxylase; 80.6 1.1 3.6E-05 33.4 2.9 26 103-128 55-80 (80)
66 1iyu_A E2P, dihydrolipoamide a 80.3 1.2 4.1E-05 33.1 3.1 27 104-130 49-75 (79)
67 4hvm_A Tlmii; PSI-biology, mid 79.0 35 0.0012 33.3 14.3 28 337-364 135-162 (493)
68 1vf7_A Multidrug resistance pr 77.1 0.97 3.3E-05 43.7 2.2 29 103-131 50-78 (369)
69 2auk_A DNA-directed RNA polyme 76.9 1.9 6.7E-05 38.1 3.9 37 108-146 62-98 (190)
70 1dcz_A Transcarboxylase 1.3S s 76.6 1.6 5.3E-05 32.0 2.7 25 104-128 53-77 (77)
71 4dk0_A Putative MACA; alpha-ha 75.6 0.92 3.2E-05 43.4 1.5 29 103-131 39-67 (369)
72 2d5d_A Methylmalonyl-COA decar 75.2 1.9 6.6E-05 31.1 2.9 26 103-128 49-74 (74)
73 2k7v_A Dihydrolipoyllysine-res 75.0 1.4 4.7E-05 33.4 2.1 37 89-131 38-74 (85)
74 2dnc_A Pyruvate dehydrogenase 73.9 1.5 5.1E-05 34.4 2.1 30 103-132 57-87 (98)
75 1pmr_A Dihydrolipoyl succinylt 72.3 1 3.6E-05 33.6 0.8 27 103-129 52-78 (80)
76 1y8o_B Dihydrolipoyllysine-res 72.1 2.6 8.7E-05 35.0 3.2 29 103-131 77-106 (128)
77 2kcc_A Acetyl-COA carboxylase 68.4 3 0.0001 31.5 2.6 27 104-131 50-76 (84)
78 2dne_A Dihydrolipoyllysine-res 68.0 3 0.0001 33.3 2.7 29 103-131 57-86 (108)
79 1gjx_A Pyruvate dehydrogenase; 67.4 1.9 6.3E-05 32.1 1.2 27 104-130 52-78 (81)
80 2jku_A Propionyl-COA carboxyla 66.1 1.2 4.2E-05 34.5 0.0 26 103-128 69-94 (94)
81 2ejm_A Methylcrotonoyl-COA car 62.1 4.8 0.00017 31.3 2.8 30 103-132 58-87 (99)
82 3fot_A 15-O-acetyltransferase; 60.8 1.4E+02 0.0049 30.0 14.8 166 172-363 280-514 (519)
83 2bgh_A Vinorine synthase; VS, 56.8 8.8 0.0003 37.5 4.3 30 336-365 152-181 (421)
84 2xr7_A Malonyltransferase; xen 56.6 8.6 0.00029 37.8 4.2 29 336-364 157-185 (453)
85 2e1v_A Acyl transferase; BAHD 56.4 9.8 0.00033 37.4 4.6 29 336-364 162-190 (454)
86 2rkv_A Trichothecene 3-O-acety 55.6 9.4 0.00032 37.4 4.3 30 336-365 148-177 (451)
87 1l5a_A Amide synthase, VIBH; n 53.3 1.5E+02 0.0051 27.9 13.6 28 337-364 119-146 (436)
88 4g22_A Hydroxycinnamoyl-COA sh 52.5 12 0.00041 36.7 4.5 30 336-365 150-179 (439)
89 2xha_A NUSG, transcription ant 50.9 9.7 0.00033 33.8 3.1 30 109-144 22-51 (193)
90 1qpo_A Quinolinate acid phosph 49.6 8.6 0.00029 36.1 2.7 23 108-130 73-95 (284)
91 1o4u_A Type II quinolic acid p 48.3 7.7 0.00026 36.5 2.2 23 108-130 73-95 (285)
92 1x1o_A Nicotinate-nucleotide p 48.1 8.4 0.00029 36.2 2.4 23 108-130 74-96 (286)
93 3our_B EIIA, phosphotransferas 47.7 5.9 0.0002 34.9 1.2 28 104-131 114-141 (183)
94 3dva_I Dihydrolipoyllysine-res 47.4 4 0.00014 40.6 0.0 28 103-130 52-79 (428)
95 3tqv_A Nicotinate-nucleotide p 47.2 8.8 0.0003 36.2 2.4 23 108-130 77-99 (287)
96 2b7n_A Probable nicotinate-nuc 47.0 9.9 0.00034 35.3 2.7 23 108-130 60-82 (273)
97 3l0g_A Nicotinate-nucleotide p 46.4 9.5 0.00033 36.2 2.5 24 108-131 86-109 (300)
98 3hbl_A Pyruvate carboxylase; T 45.7 15 0.00051 41.1 4.3 28 103-130 1121-1148(1150)
99 3u9t_A MCC alpha, methylcroton 45.3 4.4 0.00015 42.6 0.0 29 103-131 646-674 (675)
100 3gnn_A Nicotinate-nucleotide p 45.3 9.8 0.00033 36.0 2.4 23 108-130 88-110 (298)
101 3n6r_A Propionyl-COA carboxyla 45.2 11 0.00038 39.6 3.0 26 103-128 656-681 (681)
102 3paj_A Nicotinate-nucleotide p 44.7 10 0.00034 36.3 2.4 23 108-130 110-132 (320)
103 1qap_A Quinolinic acid phospho 43.8 11 0.00037 35.6 2.4 23 108-130 87-109 (296)
104 2k32_A A; NMR {Campylobacter j 40.6 14 0.00048 29.1 2.3 35 90-130 67-102 (116)
105 2jbm_A Nicotinate-nucleotide p 39.8 12 0.0004 35.4 2.0 23 108-130 73-95 (299)
106 2gpr_A Glucose-permease IIA co 39.4 24 0.00081 30.1 3.7 39 91-130 73-113 (154)
107 3h5q_A PYNP, pyrimidine-nucleo 37.8 16 0.00056 36.4 2.7 28 101-128 374-401 (436)
108 1f3z_A EIIA-GLC, glucose-speci 36.1 16 0.00055 31.4 2.1 40 91-131 78-119 (161)
109 1brw_A PYNP, protein (pyrimidi 33.5 23 0.00078 35.3 3.0 31 101-131 371-401 (433)
110 2xhc_A Transcription antitermi 33.5 24 0.00083 34.1 3.1 32 108-145 61-92 (352)
111 2dsj_A Pyrimidine-nucleoside ( 33.3 23 0.00079 35.1 3.0 31 101-131 363-393 (423)
112 1ax3_A Iiaglc, glucose permeas 32.1 29 0.001 29.7 3.1 40 91-131 78-119 (162)
113 1q9j_A PAPA5, polyketide synth 31.4 34 0.0012 32.2 3.8 28 337-364 117-144 (422)
114 2tpt_A Thymidine phosphorylase 31.3 24 0.00081 35.2 2.7 31 101-131 376-406 (440)
115 1zy8_K Pyruvate dehydrogenase 30.8 10 0.00036 34.4 0.0 29 103-131 53-82 (229)
116 2bco_A Succinylglutamate desuc 30.7 23 0.0008 33.9 2.5 35 110-148 279-313 (350)
117 1uou_A Thymidine phosphorylase 30.3 26 0.0009 35.2 2.9 32 100-131 405-436 (474)
118 3it5_A Protease LASA; metallop 28.2 22 0.00075 31.0 1.7 25 105-129 80-104 (182)
119 3c2e_A Nicotinate-nucleotide p 27.8 22 0.00076 33.4 1.7 23 108-130 69-97 (294)
120 1l5a_A Amide synthase, VIBH; n 27.6 3.8E+02 0.013 24.9 15.3 142 199-364 231-402 (436)
121 3va7_A KLLA0E08119P; carboxyla 26.5 32 0.0011 38.8 2.9 25 103-127 1211-1235(1236)
122 2vsq_A Surfactin synthetase su 26.5 3.4E+02 0.011 30.2 11.3 153 199-368 251-434 (1304)
123 2vsq_A Surfactin synthetase su 25.9 6E+02 0.021 28.1 13.3 28 337-364 140-167 (1304)
124 2jgp_A Tyrocidine synthetase 3 22.8 66 0.0023 31.4 4.2 28 338-365 216-243 (520)
125 2xha_A NUSG, transcription ant 22.5 41 0.0014 29.7 2.3 28 112-145 85-112 (193)
126 2f1m_A Acriflavine resistance 20.9 58 0.002 29.2 3.1 34 103-136 137-173 (277)
127 3tuf_B Stage II sporulation pr 20.7 47 0.0016 30.4 2.4 27 104-130 129-155 (245)
128 1qwy_A Peptidoglycan hydrolase 20.5 48 0.0016 31.2 2.4 24 106-129 235-258 (291)
129 2hsi_A Putative peptidase M23; 20.3 48 0.0016 30.9 2.4 23 106-128 228-250 (282)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=8.5e-74 Score=578.78 Aligned_cols=284 Identities=36% Similarity=0.641 Sum_probs=0.0
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee----------------------
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN---------------------- 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~---------------------- 146 (373)
|.++|+||+||++|+||+|.+|+|++||.|++||+||+|||||+++|++||++|+|.+
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 5689999999999999999999999999999999999999999999999888888755
Q ss_pred --------------------------------------------------------------------------------
Q 017358 147 -------------------------------------------------------------------------------- 146 (373)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (373)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence
Q ss_pred ----------------------------------------cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHH
Q 017358 147 ----------------------------------------VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 186 (373)
Q Consensus 147 ----------------------------------------vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk 186 (373)
+|+++|||.||++|++|++++|||+++.+||+|+|+++|+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk 240 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK 240 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence 0356789999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHH
Q 017358 187 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE 264 (373)
Q Consensus 187 ~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia 264 (373)
++|+. .++.|.|+||+++++||+++||++||+||++|++ ++|++|+++|||+||++++||++|||++++++++.+|+
T Consensus 241 ~~~~~-~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia 319 (428)
T 3dva_I 241 KFKAI-AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA 319 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhhhh-HhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence 98864 3456899999999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcc
Q 017358 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDH 344 (373)
Q Consensus 265 ~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DH 344 (373)
++++++.+++|+|+|+++|+.||||||||+||+|+++|+||+||||++||++|+++++|++.||++++|++|||||+|||
T Consensus 320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH 399 (428)
T 3dva_I 320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH 399 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 345 RLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 345 RvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
|+|||+|+|+||++|+++||||+.||+++
T Consensus 400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~ 428 (428)
T 3dva_I 400 RMIDGATAQKALNHIKRLLSDPELLLMEA 428 (428)
T ss_dssp -----------------------------
T ss_pred cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999998863
No 2
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=2.2e-64 Score=472.66 Aligned_cols=228 Identities=60% Similarity=1.018 Sum_probs=221.6
Q ss_pred ecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe
Q 017358 146 NVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID 225 (373)
Q Consensus 146 ~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~ 225 (373)
.+|++++||.||++|++|++++|||+++.++|+|+|+++|+++|+.+.++.|.++||+++++||+++||++||+||++|+
T Consensus 6 ~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~~ 85 (233)
T 1scz_A 6 RVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASID 85 (233)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEE
T ss_pred eccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEEEe
Confidence 46999999999999999999999999999999999999999998766667799999999999999999999999999999
Q ss_pred CCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccc
Q 017358 226 GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPI 305 (373)
Q Consensus 226 ~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpi 305 (373)
++++++|+++|||+||++++||++|||++++++++.||+++++++++++|+|+++++|+.||||||||+||+|..+|+||
T Consensus 86 ~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~tpI 165 (233)
T 1scz_A 86 GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPI 165 (233)
T ss_dssp TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCC
T ss_pred CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 306 INPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 306 i~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
+||||+|||++|+++++|++.||+++++++|||||+||||++||+++|+|+++||++||+|+.|++++
T Consensus 166 in~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~ 233 (233)
T 1scz_A 166 INPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred cCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999988763
No 3
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=9.5e-64 Score=473.70 Aligned_cols=228 Identities=37% Similarity=0.560 Sum_probs=221.2
Q ss_pred eeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEE
Q 017358 144 IQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 223 (373)
Q Consensus 144 l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~ 223 (373)
.+.+|++++||+||++|++|++++|||+++.++|+|+|+++|+++|+.+.++.|.++||+++++||+++||+++|+||++
T Consensus 18 ~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~ 97 (256)
T 3mae_A 18 DKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNST 97 (256)
T ss_dssp CEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSEE
T ss_pred ceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhhE
Confidence 45689999999999999999999999999999999999999999988766677999999999999999999999999999
Q ss_pred EeCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcc
Q 017358 224 IDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 303 (373)
Q Consensus 224 i~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~t 303 (373)
|+++++++++++|||+||++++||++|||++++++++.||+++++++++++|+|+|+++|++||||||||+||+|+++|+
T Consensus 98 ~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ft 177 (256)
T 3mae_A 98 WAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSM 177 (256)
T ss_dssp EETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSEEE
T ss_pred EecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 304 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 304 pii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
||+||||++||++|+++++|++.+|+++++++|||||+||||++||+++|+||++|+++||+|+.+..
T Consensus 178 pIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~ 245 (256)
T 3mae_A 178 GIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT 245 (256)
T ss_dssp CCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred cccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=1.3e-62 Score=463.32 Aligned_cols=230 Identities=38% Similarity=0.570 Sum_probs=219.5
Q ss_pred CceeeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccc
Q 017358 141 AGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 220 (373)
Q Consensus 141 ~G~l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~ 220 (373)
.|..+.+|++++||.||++|++|++++|||+++.++|+|+|+++|+++|+.. ++.|.++||+++++||+++||++||+|
T Consensus 12 ~~~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~-~~~g~kls~~~~~ikA~~~Al~~~P~~ 90 (243)
T 1dpb_A 12 YGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKELPDF 90 (243)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHSGGG
T ss_pred CCCceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhh-hhccCCCChHHHHHHHHHHHHHhChHh
Confidence 3445668999999999999999999999999999999999999999988653 346899999999999999999999999
Q ss_pred eEEEeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCC
Q 017358 221 NAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYG 298 (373)
Q Consensus 221 N~~i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G 298 (373)
|++|++ +++++|+++|||+||++++||++|||++++++++.||+++++++++++|+|+++++|+.||||||||+||+|
T Consensus 91 Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g 170 (243)
T 1dpb_A 91 NSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIG 170 (243)
T ss_dssp GEEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTC
T ss_pred hEEEecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCC
Confidence 999985 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 299 SLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 299 ~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
+++|+||+||||+|||++|+++++|++.||+++++++|||||+||||++||+|+|+|+++||++||+|+.|++
T Consensus 171 ~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 171 GTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred ccceECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=1.3e-62 Score=464.38 Aligned_cols=220 Identities=30% Similarity=0.552 Sum_probs=213.7
Q ss_pred chhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC-
Q 017358 148 PMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG- 226 (373)
Q Consensus 148 pls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~- 226 (373)
|++++||.||++|++|++++|||+++.+||+|+|+++|+++|+ .|.|+||+++++||+++||+++|+||++|++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~~~~ 92 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTWVDS 92 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECT
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEecc
Confidence 9999999999999999999999999999999999999998753 4789999999999999999999999999975
Q ss_pred ---CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcc
Q 017358 227 ---DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLST 303 (373)
Q Consensus 227 ---~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~t 303 (373)
+++++|+++|||+||++++||++|||++++++++.||+++++++++++|+|+|+++|++||||||||+||+|+++|+
T Consensus 93 ~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ft 172 (250)
T 3l60_A 93 GEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGV 172 (250)
T ss_dssp TTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCC
T ss_pred CCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhccc
Q 017358 304 PIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 372 (373)
Q Consensus 304 pii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~ 372 (373)
||+||||++||++|+++++|++.||++++|++|||||+||||++||+++|+||++|+++||+|+.|+.+
T Consensus 173 pIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~ 241 (250)
T 3l60_A 173 PVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLD 241 (250)
T ss_dssp CCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTT
T ss_pred eeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999999988765
No 6
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=1.8e-61 Score=459.92 Aligned_cols=227 Identities=33% Similarity=0.527 Sum_probs=216.7
Q ss_pred eeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEE
Q 017358 144 IQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 223 (373)
Q Consensus 144 l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~ 223 (373)
.+.+|++++||.||++|++|+ ++|||+++.++|+|+|+++|+++|+. .++.|.++||+++++||+++||++||+||++
T Consensus 31 ~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~-~~~~g~kls~~~~~ikAva~Al~~~P~~Na~ 108 (262)
T 2ii3_A 31 DRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPI-AFARGIKLSFMPFFLKAASLGLLQFPILNAS 108 (262)
T ss_dssp CEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred cceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhh-hhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence 345799999999999999997 59999999999999999999998864 3456899999999999999999999999999
Q ss_pred EeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCC
Q 017358 224 IDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 301 (373)
Q Consensus 224 i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~ 301 (373)
|++ +++++|+++|||+||++++||++|||++++++++.||+++++++++++|+|+|+++|+.||||||||+||+|+++
T Consensus 109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~ 188 (262)
T 2ii3_A 109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY 188 (262)
T ss_dssp ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence 985 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEeeeeEEEEEEe-CCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhccc
Q 017358 302 STPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 372 (373)
Q Consensus 302 ~tpii~pp~~aIL~vG~i~~~pvv~-dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~ 372 (373)
|+|||||||+|||++|+++++|++. ||+++++++|||||+||||++||+++|+||++|+++||+|+.|+++
T Consensus 189 ~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~ 260 (262)
T 2ii3_A 189 AKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLD 260 (262)
T ss_dssp EECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHH
T ss_pred eECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 9999999999999999999999997 7999999999999999999999999999999999999999988875
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=3e-61 Score=448.94 Aligned_cols=219 Identities=35% Similarity=0.585 Sum_probs=207.5
Q ss_pred ceeeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccce
Q 017358 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 221 (373)
Q Consensus 142 G~l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N 221 (373)
|..+.+|++++||+||++|++|++++|||+++.++|+|+|+++|+++|+ .|.|+||+++++||+++||++||+||
T Consensus 4 ~~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N 78 (224)
T 3rqc_A 4 GREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLN 78 (224)
T ss_dssp --CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGS
T ss_pred CCceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhh
Confidence 3345689999999999999999999999999999999999999999864 27899999999999999999999999
Q ss_pred EEEeCC--eeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCC
Q 017358 222 AVIDGD--DIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGS 299 (373)
Q Consensus 222 ~~i~~~--~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~ 299 (373)
++|+++ ++++|+++|||+||++++||++|||++++++++.||+++++++++++|+|+++++|+.||||||||+||+|+
T Consensus 79 ~~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~ 158 (224)
T 3rqc_A 79 AIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGG 158 (224)
T ss_dssp BBCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCC
T ss_pred eEEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCc
Confidence 999876 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358 300 LLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373 (373)
Q Consensus 300 ~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~ 373 (373)
++|+||+||||++||++|+++++|+ |++|||||++|||++||+|+|+|+++|+++||+|+.|++++
T Consensus 159 ~~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 224 (224)
T 3rqc_A 159 IMSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224 (224)
T ss_dssp SEEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC--
T ss_pred cceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhcC
Confidence 9999999999999999999999874 78999999999999999999999999999999999998864
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-62 Score=458.56 Aligned_cols=228 Identities=29% Similarity=0.460 Sum_probs=217.0
Q ss_pred ceeeecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccce
Q 017358 142 GVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 221 (373)
Q Consensus 142 G~l~~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N 221 (373)
|..+.+|++++||.||++|++|++++|||+++.++|+|+|+++|+++|+... .+.++||+++++||+++||++||+||
T Consensus 10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~--~~~kls~~~~~ikAv~~Al~~~P~~N 87 (239)
T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE--GRSKISVNDFIIKASALACLKVPEAN 87 (239)
T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHT--TSSCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHhChHhh
Confidence 4456689999999999999999999999999999999999999999886432 23699999999999999999999999
Q ss_pred EEEeCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCC
Q 017358 222 AVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLL 301 (373)
Q Consensus 222 ~~i~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~ 301 (373)
++|+++++++|+++|||+||++++||++||+++++++++.||+++++++++++|+|+++++|+.||||||||+||+|+++
T Consensus 88 a~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 167 (239)
T 3b8k_A 88 SSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKN 167 (239)
T ss_dssp TTSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSS
T ss_pred EEEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEeeeeEEEEEE--eCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcc
Q 017358 302 STPIINPPQSAILGMHSIVNRPMV--VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 371 (373)
Q Consensus 302 ~tpii~pp~~aIL~vG~i~~~pvv--~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll 371 (373)
|+||+||||++||++|+++++|++ .||+++++++|||||+||||++||+|+|+|+++||++||+|+.|++
T Consensus 168 ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 168 FSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred EECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999998 5889999999999999999999999999999999999999998764
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.6e-48 Score=428.35 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=178.0
Q ss_pred HhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCC----eeEEcCC
Q 017358 159 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY 234 (373)
Q Consensus 159 ~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~----~i~~~d~ 234 (373)
+|++|+ ++||++++.+||+|+|+++|+++|+.+.++.|.|+||+++++||+++||++||+||++|+++ +++++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 588896 79999999999999999999999886666778999999999999999999999999999753 6999999
Q ss_pred ccEEEEEecC--CC---eEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCC
Q 017358 235 IDISFAVGTK--KG---LVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPP 309 (373)
Q Consensus 235 inIgvAV~~~--~G---L~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp 309 (373)
+|||+||+++ +| |++|||++++++++.||++++++++++||+|+|+++|++||||||||+||+|+.+|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 67 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeeeeEEEEEEeC------CeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhh
Q 017358 310 QSAILGMHSIVNRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 369 (373)
Q Consensus 310 ~~aIL~vG~i~~~pvv~d------G~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~l 369 (373)
|+|||++|+++++|++.+ |+++++++|||||+||||+|||+++|+||+.|+++||+|+.|
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999998865 689999999999999999999999999999999999999865
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=1.6e-45 Score=341.88 Aligned_cols=193 Identities=11% Similarity=0.146 Sum_probs=170.2
Q ss_pred HHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEc
Q 017358 153 RKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYR 232 (373)
Q Consensus 153 rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~ 232 (373)
||.--+.. ...++|||+++.++|+|+|+++||+. ++||+++++||+++||+++|+||++|++++++++
T Consensus 18 R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~ 85 (219)
T 1q23_A 18 RKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_dssp THHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred CHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEe
Confidence 44444444 33579999999999999999998752 8999999999999999999999999999999999
Q ss_pred CCccEEEEE-ecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcC-CCCc-cccCCCeEEEEeCCCCCCCCcccccCCC
Q 017358 233 DYIDISFAV-GTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLLSTPIINPP 309 (373)
Q Consensus 233 d~inIgvAV-~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggTftISnlG~~G~~~~tpii~pp 309 (373)
+++|||+|| ++++||++||+.. +.+++.+|++++++++++||+| +|++ +|+ ||||||||+||+|++.+.+..++|
T Consensus 86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~ 163 (219)
T 1q23_A 86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANM 163 (219)
T ss_dssp SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCC
T ss_pred cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCC
Confidence 999999999 9999999999986 5689999999999999999998 5975 889 999999999998766665555544
Q ss_pred c---ceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChh
Q 017358 310 Q---SAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPR 367 (373)
Q Consensus 310 ~---~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~ 367 (373)
. ++|+++|+++++ +| +++|||||++|||++||+|+|+|+++||++||+|.
T Consensus 164 ~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~ 216 (219)
T 1q23_A 164 DNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216 (219)
T ss_dssp TTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence 2 699999999985 44 58999999999999999999999999999999853
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=4e-45 Score=337.87 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=166.8
Q ss_pred ccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEE-ec
Q 017358 165 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-GT 243 (373)
Q Consensus 165 ~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV-~~ 243 (373)
.++||++++.++|+|+|+++|++ .++||+++++||+++||+++|+||++|+++++++++++|||+|| ++
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 46999999999999999999864 28999999999999999999999999999999999999999999 99
Q ss_pred CCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcC-CCCc-cccCCCeEEEEeCCCCCCCCcccccCCC---cceEEEeee
Q 017358 244 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDG-SISI-DEMAGGTFTISNGGVYGSLLSTPIINPP---QSAILGMHS 318 (373)
Q Consensus 244 ~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggTftISnlG~~G~~~~tpii~pp---~~aIL~vG~ 318 (373)
++||++||+.+ +.+++.+|++++.+++++||+| +|++ +|++||||||||+||++++.++...+++ .++|+++|+
T Consensus 93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~ 171 (213)
T 3cla_A 93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAK 171 (213)
T ss_dssp TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEEC
T ss_pred CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeE
Confidence 99999999886 5699999999999999999996 9988 7899999999999999888775544444 369999999
Q ss_pred eEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 319 IVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 319 i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
++++ +| +++|||||++|||++||+|+|+|+++||++||+
T Consensus 172 ~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 172 YQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp CEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred EEEE----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 9885 44 579999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-43 Score=326.11 Aligned_cols=180 Identities=18% Similarity=0.192 Sum_probs=164.7
Q ss_pred ccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe-CCeeEEcCCccEEEEE-e
Q 017358 165 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G 242 (373)
Q Consensus 165 ~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~-~~~i~~~d~inIgvAV-~ 242 (373)
.++||++++.++|+|+|+++||+. ++||+++++||+++||+++|+||++|+ ++++++++++|||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 469999999999999999998753 899999999999999999999999999 8999999999999999 9
Q ss_pred cCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhc-CCCCcc------ccCCCeEEEEeCCCCCCCCcccccCCC---cce
Q 017358 243 TKKGLVVPVIRNSERMNFAEIEKEISTLAKKAND-GSISID------EMAGGTFTISNGGVYGSLLSTPIINPP---QSA 312 (373)
Q Consensus 243 ~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~-g~l~~~------d~~ggTftISnlG~~G~~~~tpii~pp---~~a 312 (373)
+++||++|++. +..+++.+|++++++++++||+ |+|+++ |++||||||||+||++++.++...+++ ..+
T Consensus 95 t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~P 173 (217)
T 2i9d_A 95 KENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYP 173 (217)
T ss_dssp STTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSC
T ss_pred cCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEE
Confidence 99999999986 5678999999999999999998 599995 999999999999999888876655544 369
Q ss_pred EEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHh
Q 017358 313 ILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIV 363 (373)
Q Consensus 313 IL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~L 363 (373)
|+++|+++++ +| |++|||||++|||+|||+|+|+|+++||++|
T Consensus 174 Ii~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 174 LLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 9999999875 44 6799999999999999999999999999987
No 13
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=108.47 Aligned_cols=62 Identities=21% Similarity=0.557 Sum_probs=58.5
Q ss_pred CCCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 86 DSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 86 ~~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+..+.++++||++|+++.+|+|.+|++++||.|++||+|+++|+||+..+++||.+|++.++
T Consensus 3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i 64 (98)
T 2dnc_A 3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 64 (98)
T ss_dssp CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEEC
T ss_pred CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999863
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=110.19 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=58.8
Q ss_pred CCCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 86 DSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 86 ~~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+.+|.++++||++|+++.+|+|.+|++++||.|++||+|+++|+||+..+++||.+|++.++
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i 64 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKI 64 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEEC
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999864
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.37 E-value=1.1e-12 Score=103.69 Aligned_cols=60 Identities=23% Similarity=0.464 Sum_probs=56.9
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
++..+++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.++
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 62 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEE
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999863
No 16
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.37 E-value=9.3e-13 Score=111.82 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=58.9
Q ss_pred cCCCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 85 ~~~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
++..+.++++||++|+++++|+|.+|++++||.|++||+|+++|+||+.++|+||.+|+|.++
T Consensus 22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i 84 (128)
T 1y8o_B 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 84 (128)
T ss_dssp -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEE
T ss_pred ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999864
No 17
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.33 E-value=1.5e-12 Score=104.39 Aligned_cols=59 Identities=25% Similarity=0.473 Sum_probs=56.4
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+.++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+++||.+|++.++
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i 61 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEE
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999863
No 18
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.31 E-value=1.6e-13 Score=127.55 Aligned_cols=60 Identities=25% Similarity=0.639 Sum_probs=0.0
Q ss_pred CceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+|.++|+||+||++|++|+|.+|+|++||.|++||+|++|||||++++|+||++|+|.++
T Consensus 1 ~~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i 60 (229)
T 1zy8_K 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 60 (229)
T ss_dssp ------------------------------------------------------------
T ss_pred CCceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEE
Confidence 367899999999999999999999999999999999999999999999999999999863
No 19
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.28 E-value=9.2e-13 Score=102.42 Aligned_cols=58 Identities=41% Similarity=0.673 Sum_probs=55.3
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
|..+++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.+
T Consensus 1 m~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~ 58 (80)
T 1pmr_A 1 SSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDA 58 (80)
T ss_dssp CCCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCB
T ss_pred CCcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999986
No 20
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.23 E-value=1e-11 Score=96.06 Aligned_cols=57 Identities=46% Similarity=0.717 Sum_probs=54.9
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.++
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 58 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEI 58 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEE
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999863
No 21
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.14 E-value=4.6e-11 Score=91.86 Aligned_cols=57 Identities=33% Similarity=0.608 Sum_probs=54.9
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
++++||++|++..+|+|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 58 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999863
No 22
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.14 E-value=5.5e-11 Score=91.99 Aligned_cols=57 Identities=25% Similarity=0.528 Sum_probs=54.1
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|.++++||++|++ +|+|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~ 57 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEEC
T ss_pred CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEE
Confidence 4578999999998 99999999999999999999999999999999999999999874
No 23
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.05 E-value=1.6e-10 Score=89.57 Aligned_cols=56 Identities=32% Similarity=0.528 Sum_probs=53.3
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
.++++||++| +...|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.+
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~ 57 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKE 57 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEE
Confidence 3689999999 6899999999999999999999999999999999999999999986
No 24
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.02 E-value=4.1e-10 Score=86.99 Aligned_cols=54 Identities=30% Similarity=0.559 Sum_probs=51.1
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.+++||++|++ + +|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~ 55 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSV 55 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEE
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEE
Confidence 57999999996 7 999999999999999999999999999999999999999863
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=98.73 E-value=2.2e-09 Score=84.18 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=48.8
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|.+++++|.+ |+|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 1 m~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~ 53 (85)
T 2k7v_A 1 MVKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53 (85)
T ss_dssp CCSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEE
T ss_pred CCcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEE
Confidence 3457889988 8999999999999999999999999999999999999999873
No 26
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.48 E-value=9.6e-08 Score=74.68 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=42.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.++
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 56 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI 56 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEEC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEE
Confidence 568999999999999999999999999999999999999999863
No 27
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.48 E-value=6e-08 Score=77.50 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=29.1
Q ss_pred CceEEEEccCCCCCC----CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 88 GDLVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 88 ~~~~~~~~p~~g~~~----~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.+..++++|...+.. ..|.|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 13 ~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~ 76 (94)
T 2jku_A 13 LGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76 (94)
T ss_dssp -----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------
T ss_pred ccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEE
Confidence 346789999988764 589999999999999999999999999999999999999999763
No 28
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.35 E-value=4.7e-07 Score=67.92 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=42.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|+|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~ 50 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV 50 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEE
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEE
Confidence 468999999999999999999999999999999999999999863
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.6e-07 Score=72.53 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=41.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~ 145 (373)
..|+|.+|++++||.|++||+|+++|++|+..++.||.+|++.
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK 66 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE
Confidence 4689999999999999999999999999999999999999987
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.20 E-value=1.7e-06 Score=65.06 Aligned_cols=45 Identities=27% Similarity=0.545 Sum_probs=42.3
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|.|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~ 56 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI 56 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEE
Confidence 468999999999999999999999999999999999999999763
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.14 E-value=2.5e-06 Score=64.82 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=42.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|.|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 59 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEE
Confidence 458999999999999999999999999999999999999999863
No 32
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.11 E-value=1.1e-06 Score=67.44 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=38.2
Q ss_pred EeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 107 LAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 107 i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
+.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 22 ~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 62 (80)
T 1bdo_A 22 DAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62 (80)
T ss_dssp TSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEE
Confidence 34689999999999999999999999999999999999874
No 33
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=67.36 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=42.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|.|.+|++++||.|++||+|+++|++|...++.||.+|++.++
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~ 65 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV 65 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEE
Confidence 468999999999999999999999999999999999999999863
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.00 E-value=4.3e-06 Score=88.89 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=42.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.-|+|.+|+|++||.|++||+|+++|+||+.++|+||.+|+|.++
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i 663 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKI 663 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEE
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEE
Confidence 358999999999999999999999999999999999999999874
No 35
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.94 E-value=5.4e-06 Score=93.26 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=42.2
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
-|+|.+|+|++||.|++||+|+++|+||++++|+||.+|+|.++
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i 1218 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKI 1218 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEE
Confidence 49999999999999999999999999999999999999999874
No 36
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=97.84 E-value=1.3e-05 Score=68.28 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=42.5
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..+..|.+|+ +...+ | +++||.|++||+++.||++|+..+|.||.+|+|.++
T Consensus 37 t~~a~~~lG~-i~~V~---l-p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~ei 88 (136)
T 1zko_A 37 TNHAQEQLGD-VVYVD---L-PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEV 88 (136)
T ss_dssp CHHHHHHHCS-EEEEE---C-CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEE
T ss_pred EhhhcccCCC-cEEEE---e-cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEE
Confidence 3455677765 33322 2 599999999999999999999999999999999986
No 37
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.83 E-value=2.4e-06 Score=90.67 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=0.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
..|+|.+|+|++||.|++||+|+++|+||++++|+||.+|+|.++
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i 653 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKAL 653 (675)
T ss_dssp ---------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEE
Confidence 468999999999999999999999999999999999999999874
No 38
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.81 E-value=1.7e-05 Score=67.17 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=43.4
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++..|.+|+ +...++ +++|+.|++||++++||++|+..+|.||.+|+|.++
T Consensus 28 td~a~~~lG~-i~~v~l----p~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~ev 79 (131)
T 1hpc_A 28 TDHAQDHLGE-VVFVEL----PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEV 79 (131)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEE
T ss_pred ehhhcccCCC-ceEEEe----cCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEE
Confidence 4455677765 444443 599999999999999999999999999999999875
No 39
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.78 E-value=1.6e-05 Score=89.04 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=42.2
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|+|++||.|++||+|+++|+||+.++|+||.+|+|.++
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i 1128 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQV 1128 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEE
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEE
Confidence 58899999999999999999999999999999999999999874
No 40
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.76 E-value=2.4e-05 Score=66.04 Aligned_cols=52 Identities=31% Similarity=0.401 Sum_probs=43.8
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++..|.+|+ +...++ +++|+.|++||++++||++|+..+|.||.+|+|.++
T Consensus 28 t~~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~ev 79 (128)
T 1onl_A 28 TDYAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEV 79 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEE
T ss_pred ehHHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEE
Confidence 4455677776 555444 699999999999999999999999999999999975
No 41
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.75 E-value=2.5e-05 Score=65.97 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=44.1
Q ss_pred EEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 91 ~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.++..|.+|+ +...++ +++|+.|++||++++||++|+..+|.||.+|+|.++
T Consensus 29 td~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~ev 80 (128)
T 3a7l_A 29 TEHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAV 80 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred ehHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEE
Confidence 4456777776 555544 689999999999999999999999999999999985
No 42
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=97.51 E-value=5.5e-05 Score=80.60 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=42.2
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|+|++||.|++||+|+++|++|+..+|.||.+|++.++
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i 700 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKV 700 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCC
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEE
Confidence 69999999999999999999999999999999999999999863
No 43
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.32 E-value=0.00011 Score=82.45 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=36.1
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
.|+|.+|+|++||.|++||+|+++|++|+..+|+||.+|++.++
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i 1146 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV 1146 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEE
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEE
Confidence 58899999999999999999999999999999999999999874
No 44
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.21 E-value=0.00024 Score=58.06 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=40.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCcee-----------------------------eEEecCCCceeeecc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT-----------------------------IDVASPQAGVIQNVP 148 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~-----------------------------~ei~sp~~G~l~~vp 148 (373)
..|.|.+|++++||.|++||+|++++++++. ..|.||.+|++..+.
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 4699999999999999999999999998655 389999999998643
No 45
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.01 E-value=0.00065 Score=56.94 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=37.4
Q ss_pred eeEeEEee-cCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w~~-~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|+|+..-. ++|+.|++||+++.||+.|+..++.||.+|+|.++
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~Vvev 75 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEI 75 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEE
Confidence 55555433 78999999999999999999999999999999874
No 46
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.87 E-value=0.00099 Score=57.02 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=37.3
Q ss_pred eeEeEE-eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w-~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|+|+-. +.++|+.|++||+++.||+.|+..++.||.+|+|.++
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 555544 3478999999999999999999999999999999874
No 47
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.76 E-value=0.00079 Score=57.28 Aligned_cols=43 Identities=30% Similarity=0.503 Sum_probs=37.3
Q ss_pred eeEeEE-eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w-~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|+|+-. +.++|+.|++||+++.||+.|+..++.||.+|+|.++
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 455443 3478999999999999999999999999999999874
No 48
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.50 E-value=0.0019 Score=55.99 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=37.1
Q ss_pred eeEeEE-eecCCCeeecCCceeeeecCceeeEEecCCCceeeec
Q 017358 105 GTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNV 147 (373)
Q Consensus 105 g~i~~w-~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~v 147 (373)
|+|+-. +.++|+.|++||+++.||+.|+..++.||.+|+|.++
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 455433 3478999999999999999999999999999999874
No 49
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=92.25 E-value=0.12 Score=49.60 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=26.6
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|+++++..
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 46999999999999999999999998864
No 50
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=91.90 E-value=0.14 Score=49.31 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=38.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec----CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt----dK~~~ei~sp~~G~l~~ 146 (373)
..+-+.+..++.||.|++||+|++|.. .+...+|.||.+|++..
T Consensus 263 ~~~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~ 310 (331)
T 3na6_A 263 EHDGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLIS 310 (331)
T ss_dssp SSCEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEE
T ss_pred CCCeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEE
Confidence 455688889999999999999999986 35678999999999864
No 51
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=91.67 E-value=0.094 Score=49.97 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=25.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
..|.|.++++++||.|++||+|++++++
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4599999999999999999999999875
No 52
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=91.23 E-value=0.18 Score=49.35 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=38.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec------CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET------DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt------dK~~~ei~sp~~G~l~~ 146 (373)
..+-+.+..++.||.|++||+|++|.. .....++.||.+|+|--
T Consensus 296 ~~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~ 345 (368)
T 3fmc_A 296 PKAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL 345 (368)
T ss_dssp SSCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE
T ss_pred CCCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE
Confidence 456677899999999999999999988 56788999999999853
No 53
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=90.79 E-value=0.25 Score=48.79 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=25.0
Q ss_pred CeeeEeEEee-cCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLK-QPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~-~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.++++ ++||.|++||+|+++++
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~ 155 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence 5699999998 99999999999999985
No 54
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=90.56 E-value=0.23 Score=48.18 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=37.6
Q ss_pred eeeEeEEeecCCCeeecCCceeeeec----CceeeEEecCCCceeee
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEt----dK~~~ei~sp~~G~l~~ 146 (373)
.+-+.+..++.||.|++||+|+.++. .+...++.||.+|+|..
T Consensus 274 ~~G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~ 320 (354)
T 3cdx_A 274 RTGLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWF 320 (354)
T ss_dssp SCEEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEE
T ss_pred CCEEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEE
Confidence 34478888999999999999999987 57889999999999874
No 55
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=87.66 E-value=0.46 Score=41.28 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=37.6
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCceeeE-EecCCCceeee
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQN 146 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~e-i~sp~~G~l~~ 146 (373)
||--+-..+..|++|.+||.++.+.|-|-.+- +.||.+|++.-
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~ 151 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIF 151 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEE
Confidence 56667778999999999999999999997766 89999998853
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=86.35 E-value=0.38 Score=44.36 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.9
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.++++++||.|++||+|+++++...
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~ 58 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATY 58 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHH
Confidence 359999999999999999999999988653
No 57
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=85.86 E-value=0.56 Score=34.70 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.8
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.+.++++|+.|..|++|+.+++
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 369999999999999999999999875
No 58
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=83.28 E-value=0.81 Score=34.04 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.9
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecC
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.|.|.++++++||.|..|++|+.++.+
T Consensus 52 ~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 52 DGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp CEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 589999999999999999999999764
No 59
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=82.79 E-value=0.81 Score=34.04 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=28.9
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
..++.-| ..|.|.+.++++|+.|+.|++|+.++.+
T Consensus 43 ~~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 4455554 3589999999999999999999999864
No 60
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=82.25 E-value=0.84 Score=33.05 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
..|.|.++++++|+.|++|++|+.++.+
T Consensus 43 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 43 RSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 3689999999999999999999998765
No 61
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=82.11 E-value=1.3 Score=42.31 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=36.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec----CceeeEEecCCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQN 146 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt----dK~~~ei~sp~~G~l~~ 146 (373)
..+.+....++.|+.|++||+|+++.. .+...++.||.+|++--
T Consensus 263 ~~~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~ 310 (332)
T 2qj8_A 263 PSPGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA 310 (332)
T ss_dssp SSSEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE
T ss_pred CCCeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE
Confidence 345566788999999999999999944 56778899999999854
No 62
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=82.11 E-value=0.82 Score=34.88 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=25.9
Q ss_pred CeeeEeEEeecCCC-eeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd-~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++|+ .|+.|++|+.++.+.
T Consensus 55 ~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 55 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp SCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred cCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 36999999999999 899999999998754
No 63
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=81.16 E-value=1.2 Score=34.65 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++|+.|..|++|+.++...
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998643
No 64
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.67 E-value=0.96 Score=35.48 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=30.3
Q ss_pred eeeEeEEeecCCCeeecCCceeeeec-CceeeEEecCCCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAG 142 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEt-dK~~~ei~sp~~G 142 (373)
.|.|. +++++|+.|+.|++|+.++. |...+....|+.|
T Consensus 62 ~G~V~-~~v~~G~~V~~G~~l~~i~~~~~~~v~~~~~~~~ 100 (100)
T 2dn8_A 62 RGRVK-YIKRPGAVLEAGCVVARLELDDPSKVHPSGPSSG 100 (100)
T ss_dssp SEEEE-ECSCTTCEECSSCEEEEECCSCSCCCCSCCCCCC
T ss_pred CEEEE-EEeCCCCEECCCCEEEEEEcCCccEEEeccccCC
Confidence 58888 99999999999999999975 4466666666554
No 65
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=80.61 E-value=1.1 Score=33.42 Aligned_cols=26 Identities=42% Similarity=0.721 Sum_probs=23.7
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|.|.+.++++|+.|+.|++|+.+|
T Consensus 55 ~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 55 KSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 36899999999999999999999885
No 66
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=80.33 E-value=1.2 Score=33.09 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=24.7
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecC
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.|.|.+.++++|+.|..|++|+.++.+
T Consensus 49 ~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 49 AGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 589999999999999999999999764
No 67
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=78.95 E-value=35 Score=33.28 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 337 YIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 337 ~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
-+-+++||-++||.-...|+++|.+..+
T Consensus 135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~ 162 (493)
T 4hvm_A 135 VLGVVAHQMLLDARSRYMVLGAVWQAYY 162 (493)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEecchhhccHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998763
No 68
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=77.15 E-value=0.97 Score=43.66 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=26.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|+++++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 46999999999999999999999998764
No 69
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=76.87 E-value=1.9 Score=38.14 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.1
Q ss_pred eEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~ 146 (373)
...++++|+.|++|+.||+. |+.+..|-|..+|++.=
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f 98 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRF 98 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEE
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEE
Confidence 36789999999999999976 89999999999999974
No 70
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=76.59 E-value=1.6 Score=32.04 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=23.3
Q ss_pred eeeEeEEeecCCCeeecCCceeeee
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.|.|.++.+++|+.|..|++|+.+|
T Consensus 53 ~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 53 DGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CEEEEEEecCCcCEECCCCEEEEEC
Confidence 5899999999999999999999886
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.64 E-value=0.92 Score=43.40 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=26.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|.|.++++++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence 46899999999999999999999998764
No 72
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=75.22 E-value=1.9 Score=31.08 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=23.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|.|.+..+++|+.|+.|++|+.+|
T Consensus 49 ~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 49 RDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 36899999999999999999999875
No 73
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=74.96 E-value=1.4 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=30.5
Q ss_pred ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+..++.-| ..|.|.+.++++|+.|..|++|+.++.+.
T Consensus 38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 45666666 35789999999999999999999998754
No 74
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.88 E-value=1.5 Score=34.43 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred CeeeEeEEeecCCCee-ecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRV-EMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V-~~gd~l~~vEtdK~ 132 (373)
..|.|.++++++|+.| ..|++|+.++.+..
T Consensus 57 ~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp SCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred CCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 3699999999999999 99999999987653
No 75
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=72.29 E-value=1 Score=33.60 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=24.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeec
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
..|.|.++++++||.|..|++|+.++.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 468899999999999999999999875
No 76
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=72.13 E-value=2.6 Score=35.00 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.3
Q ss_pred CeeeEeEEeecCCC-eeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd-~V~~gd~l~~vEtdK 131 (373)
..|+|.+.++++|| .|+.|++|+.++.+.
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 46999999999998 899999999998765
No 77
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=68.44 E-value=3 Score=31.50 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.1
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.|.|.+++ ++|+.|..|++|+.++.+.
T Consensus 50 ~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 50 RGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 58999999 9999999999999997653
No 78
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=67.99 E-value=3 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=26.0
Q ss_pred CeeeEeEEeecCCC-eeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd-~V~~gd~l~~vEtdK 131 (373)
..|.|.+.++++|+ .|..|++|+.++.+.
T Consensus 57 ~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 57 EECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp SSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred CCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 36999999999999 899999999998764
No 79
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=67.40 E-value=1.9 Score=32.12 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.4
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecC
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.|.|.+.++++|+.|..|++|+.++.+
T Consensus 52 ~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 52 AGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp SSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 588899999999999999999999764
No 80
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=66.06 E-value=1.2 Score=34.49 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=0.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|.|.++++++|+.|+.|++|+++|
T Consensus 69 ~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 69 KTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp --------------------------
T ss_pred CCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 36889999999999999999999876
No 81
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=62.07 E-value=4.8 Score=31.28 Aligned_cols=30 Identities=23% Similarity=0.518 Sum_probs=26.4
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCce
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~ 132 (373)
..|.|.++++++|+.|..|++|++++.+..
T Consensus 58 ~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 58 KDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 468999999999999999999999976653
No 82
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=60.80 E-value=1.4e+02 Score=29.99 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecC-------
Q 017358 172 TFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTK------- 244 (373)
Q Consensus 172 ~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~------- 244 (373)
....++-...-++++..|+.+ |.++|+++++.-|++.|+.++ .....-.....+.++++|+.-
T Consensus 280 ~~~~ls~~~t~~L~~~ck~~~----~~g~Tvt~~l~Aa~~~al~~~------~~~~~~~~~~~~~~~~pvnlR~~l~~~~ 349 (519)
T 3fot_A 280 VIHKLSADESIDIVKAVKTRL----GPGFTISHLTQAAIVLALLDH------LKPNDLSDDEVFISPTSVDGRRWLREDI 349 (519)
T ss_dssp EEEECCHHHHHHHHHHHHHHT----CTTCCHHHHHHHHHHHHHHHH------C----CCTTCCEEEEEEEECGGGBCHHH
T ss_pred EEEEcCHHHHHHHHHHHHhcC----CCCeeHHHHHHHHHHHHHHhh------cCCcccCCCccEEEEeeeeccccCCCcc
Q ss_pred -----CCeEEEEEecCcCCC----------------HHHHHHHHHHHHHHhhcCCC-------------------Ccccc
Q 017358 245 -----KGLVVPVIRNSERMN----------------FAEIEKEISTLAKKANDGSI-------------------SIDEM 284 (373)
Q Consensus 245 -----~GL~vpvI~~a~~~s----------------l~eia~~~~~l~~~ar~g~l-------------------~~~d~ 284 (373)
.......--..+... +.++++.+++......++.+ .+...
T Consensus 350 ~~n~~~~~~~~~~~~v~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np~i~~l~~~~k~~~~~l~~~~~~~~~ 429 (519)
T 3fot_A 350 ASNFYAMCQTAAVVRIENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENPFLQALGLRVHNFEASYLHAKPIPFE 429 (519)
T ss_dssp HTSCCSCCEEEEEEEECCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cccccceeeeeeeeEecCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCchHHHhHHHHHHHHHHHhcccCCCCC
Q ss_pred CCCeEEEEeCCCCC--CCC--------------------cccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEE
Q 017358 285 AGGTFTISNGGVYG--SLL--------------------STPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTY 342 (373)
Q Consensus 285 ~ggTftISnlG~~G--~~~--------------------~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~ 342 (373)
...+..+||+|.+. ... .........+.+.+++. .+.|++.|
T Consensus 430 ~~~tp~lSslG~vd~~lp~~y~~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~Tf~g----------------~L~l~~~y 493 (519)
T 3fot_A 430 GEANPLFISDGINERFIPHEIKQTATGENVLSVESIDFVVNQSLPYLAIRLDSWRD----------------ASTLNIIY 493 (519)
T ss_dssp SBCCCEEEEEEEGGGTSCSEEEETTTTEEEEEEEEEEEEECCCSSSCEEEEEEETT----------------EEEEEEEE
T ss_pred CccCcccccCCccccccchhhccccCCCCceEEEEEEEEccccCCceEEEEEEECC----------------EEEEEEEe
Q ss_pred cccccChHHHHHHHHHHHHHh
Q 017358 343 DHRLIDGREAVFFLRRIKDIV 363 (373)
Q Consensus 343 DHRvvDGa~aarFl~~lk~~L 363 (373)
|-...|...+-.||+.+++.|
T Consensus 494 n~a~~~~e~v~~~l~~v~~~L 514 (519)
T 3fot_A 494 NDANYTEAEVQKYLQSIVEFM 514 (519)
T ss_dssp ETTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHH
No 83
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=56.85 E-value=8.8 Score=37.47 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=27.2
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 152 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 181 (421)
T 2bgh_A 152 TAIGVNLSHKIADVLSLATFLNAWTATCRG 181 (421)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeEEechHHHHHHHHHHHHHHhcC
Confidence 559999999999999999999999988753
No 84
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=56.60 E-value=8.6 Score=37.79 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=27.2
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
+-|+++++|.++||.-+..|++.|.+...
T Consensus 157 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 157 ISIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 56999999999999999999999999877
No 85
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=56.39 E-value=9.8 Score=37.44 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=27.2
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
+-|+++++|.++||.-+..|++.|.+...
T Consensus 162 ~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 162 IAIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 56999999999999999999999999887
No 86
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=55.62 E-value=9.4 Score=37.40 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=27.4
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 148 ~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 148 LILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 569999999999999999999999988764
No 87
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=53.29 E-value=1.5e+02 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=25.7
Q ss_pred EEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 337 YIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 337 ~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
-+-+.+||-++||.-...|+++|.+..+
T Consensus 119 ~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~ 146 (436)
T 1l5a_A 119 LIYTRAHHIVLDGYGMMLFEQRLSQHYQ 146 (436)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhheecHhHHHHHHHHHHHHHH
Confidence 4889999999999999999999998875
No 88
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=52.50 E-value=12 Score=36.66 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=27.2
Q ss_pred EEEEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 336 MYIALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 336 m~lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-|+++++|.++||.-+..|++.|.+....
T Consensus 150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg 179 (439)
T 4g22_A 150 VSLGVGMRHHAADGFSGLHFINSWSDMARG 179 (439)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeeeccCcHHHHHHHHHHHHHHhCC
Confidence 459999999999999999999999998753
No 89
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=50.88 E-value=9.7 Score=33.79 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=27.0
Q ss_pred EEeecCCCeeecCCceeeeecCceeeEEecCCCcee
Q 017358 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVI 144 (373)
Q Consensus 109 ~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l 144 (373)
..++++|+.|++||.||+-. .|-+..+|++
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V 51 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVI 51 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEE
Confidence 56899999999999999766 7889999998
No 90
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=49.55 E-value=8.6 Score=36.11 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||++++++..
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 73 VLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCcEEEEEEEe
Confidence 58999999999999999988765
No 91
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=48.34 E-value=7.7 Score=36.48 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||++++++..
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEEc
Confidence 58999999999999999998765
No 92
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=48.08 E-value=8.4 Score=36.23 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.9
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||+++++|..
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEEc
Confidence 58999999999999999998765
No 93
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=47.70 E-value=5.9 Score=34.91 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=24.4
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+|+--++++++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 5777899999999999999999986554
No 94
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=47.36 E-value=4 Score=40.64 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=0.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|+|.++++++||.|..|++|+.++.+
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp ----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5799999999999999999999999753
No 95
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=47.23 E-value=8.8 Score=36.16 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||++++++.+
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEEc
Confidence 48999999999999999999865
No 96
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=47.04 E-value=9.9 Score=35.32 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|.+||++++||..
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G~ 82 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEec
Confidence 47999999999999999998764
No 97
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=46.42 E-value=9.5 Score=36.16 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred eEEeecCCCeeecCCceeeeecCc
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+|++++|+.|++||++++++.+-
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~G~a 109 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGEALA 109 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEEEEH
T ss_pred EEEEeCCCCEeeCCCEEEEEEECH
Confidence 589999999999999999998653
No 98
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=45.70 E-value=15 Score=41.12 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.5
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
..|+|.++++++||.|+.||+|+++|.+
T Consensus 1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1121 FDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3699999999999999999999999864
No 99
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=45.34 E-value=4.4 Score=42.60 Aligned_cols=29 Identities=17% Similarity=0.453 Sum_probs=0.0
Q ss_pred CeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
..|+|.++++++||.|+.|++|+++|.+.
T Consensus 646 ~~G~v~~i~~~~G~~v~~g~~l~~i~~~~ 674 (675)
T 3u9t_A 646 HAGVVKALYCSEGELVEEGTPLVELDENQ 674 (675)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEeCCcCCcCCCCEEEEEecCC
Confidence 56899999999999999999999998764
No 100
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=45.32 E-value=9.8 Score=36.04 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=21.0
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||++++++..
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEec
Confidence 58999999999999999999865
No 101
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=45.25 E-value=11 Score=39.59 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=24.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
..|+|.++++++||.|+.|++|+++|
T Consensus 656 ~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 656 KKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 46899999999999999999999986
No 102
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=44.73 E-value=10 Score=36.33 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|++||++++++..
T Consensus 110 v~~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 110 IEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEecCCCEEEEEEec
Confidence 58999999999999999998865
No 103
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=43.83 E-value=11 Score=35.63 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|.+||++++|+..
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 58999999999999999998764
No 104
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=40.63 E-value=14 Score=29.10 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=28.3
Q ss_pred eEEEEccCCCCCCCeeeEeEEeecCCCeeecC-CceeeeecC
Q 017358 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMD-EPIAQIETD 130 (373)
Q Consensus 90 ~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~g-d~l~~vEtd 130 (373)
...++-|. .|.|.+..+++|+.|..| ++|+.|...
T Consensus 67 ~~~i~AP~------~G~V~~~~~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 67 HTEIKAPF------DGTIGDALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp EEEEECSS------SEEECCCSCCTTCEECTTTSCCEEEECS
T ss_pred CCEEEcCC------CEEEEEEECCCCCEEcCCCcEEEEEECC
Confidence 35566553 588999999999999998 999998664
No 105
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=39.75 E-value=12 Score=35.37 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=20.7
Q ss_pred eEEeecCCCeeecCCceeeeecC
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.+|++++|+.|.+||+|++||..
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G~ 95 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEEc
Confidence 47999999999999999998765
No 106
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=39.41 E-value=24 Score=30.05 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=29.2
Q ss_pred EEEEccCCCCC--CCeeeEeEEeecCCCeeecCCceeeeecC
Q 017358 91 VDAVVPFMGES--ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 91 ~~~~~p~~g~~--~~eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
.|+.+ .+|-. ..+|+--+.++++||+|++||+|+++.-+
T Consensus 73 ~evLi-HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 113 (154)
T 2gpr_A 73 VEILL-HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLK 113 (154)
T ss_dssp CEEEE-ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHH
T ss_pred CEEEE-EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHH
Confidence 45555 45533 24677788999999999999999998644
No 107
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=37.83 E-value=16 Score=36.37 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.7
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeee
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
.+..+--..++++.||+|++||+|++|=
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4566777899999999999999999996
No 108
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=36.09 E-value=16 Score=31.36 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=28.8
Q ss_pred EEEEccCCCCC--CCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 91 VDAVVPFMGES--ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 91 ~~~~~p~~g~~--~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.++.+ .+|-. ..+|+=-+.++++||+|++||+|+++.-++
T Consensus 78 ~evLi-HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 78 VELFV-HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp CEEEE-ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CEEEE-EECccchhcCCCccEEEEeCcCEECCCCEEEEECHHH
Confidence 34444 44533 246666788999999999999999986543
No 109
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=33.53 E-value=23 Score=35.27 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=26.0
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+..+--..++++.||+|++||+|+.|=+++
T Consensus 371 ~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 371 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 4566666899999999999999999996553
No 110
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=33.49 E-value=24 Score=34.08 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=27.1
Q ss_pred eEEeecCCCeeecCCceeeeecCceeeEEecCCCceee
Q 017358 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 108 ~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~ 145 (373)
...++++|+.|++||.||+-. .|-|..+|++.
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 467899999999999999876 67788888873
No 111
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.31 E-value=23 Score=35.12 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=25.9
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+..+--..++++.||+|++||+|+.|=+++
T Consensus 363 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 363 PIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 4556666899999999999999999996553
No 112
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=32.09 E-value=29 Score=29.74 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=29.4
Q ss_pred EEEEccCCCCC--CCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 91 VDAVVPFMGES--ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 91 ~~~~~p~~g~~--~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.++.+ .+|-. ..+|+=.+.++++||+|++||+|+++.-++
T Consensus 78 ~evLi-HIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 78 REILI-HFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp CEEEE-ECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CEEEE-EECccchhcCCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 35555 44533 346777889999999999999999986544
No 113
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=31.40 E-value=34 Score=32.20 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=25.5
Q ss_pred EEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 337 YIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 337 ~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
-+-+++||-++||.-...|+++|.+..+
T Consensus 117 ~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~ 144 (422)
T 1q9j_A 117 ELTLYLHHCMADGHHGAVLVDELFSRYT 144 (422)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeceEEEchhhHHHHHHHHHHHHH
Confidence 3889999999999999999999988765
No 114
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=31.32 E-value=24 Score=35.21 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.2
Q ss_pred CCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 101 ~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
.+..+--..++++.||+|++||+|+.|=+++
T Consensus 376 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 376 TIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 4666667899999999999999999996653
No 115
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=30.81 E-value=10 Score=34.36 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=0.0
Q ss_pred CeeeEeEEeecCCCe-eecCCceeeeecCc
Q 017358 103 TDGTLAKFLKQPGDR-VEMDEPIAQIETDK 131 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~-V~~gd~l~~vEtdK 131 (373)
.+|.|.+.++++||. |..|++|+.++.+.
T Consensus 53 ~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 53 DDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEecCCCeeecCCCEEEEEeccC
Confidence 468999999999997 99999999997543
No 116
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=30.74 E-value=23 Score=33.88 Aligned_cols=35 Identities=9% Similarity=-0.109 Sum_probs=28.8
Q ss_pred EeecCCCeeecCCceeeeecCceeeEEecCCCceeeecc
Q 017358 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVP 148 (373)
Q Consensus 110 w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~vp 148 (373)
..++.|+.|++||+|+++- | -++.+|.+|.+.-.|
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~~p 313 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIVFP 313 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEESC
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEEec
Confidence 4568999999999999994 4 678899999876555
No 117
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=30.30 E-value=26 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCCCeeeEeEEeecCCCeeecCCceeeeecCc
Q 017358 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (373)
Q Consensus 100 ~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK 131 (373)
+.+..+--..++++.||+|++||+|+.|=+++
T Consensus 405 ~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 405 EPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp --CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 34455666899999999999999999996553
No 118
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=28.22 E-value=22 Score=30.96 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=20.7
Q ss_pred eeEeEEeecCCCeeecCCceeeeec
Q 017358 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 105 g~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
+-+.+..|++||.|++||+|..+-.
T Consensus 80 ~HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 80 YHMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESEESCCCCTTCEECTTCEEEEECS
T ss_pred EcCCccccCCCCEEcCCCEEEeecC
Confidence 4455677999999999999999864
No 119
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=27.80 E-value=22 Score=33.36 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEeecCCCeeecC------CceeeeecC
Q 017358 108 AKFLKQPGDRVEMD------EPIAQIETD 130 (373)
Q Consensus 108 ~~w~~~~Gd~V~~g------d~l~~vEtd 130 (373)
.+|++++|+.|.+| |+|++||..
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G~ 97 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITGP 97 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEEc
Confidence 47999999999999 998888764
No 120
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=27.58 E-value=3.8e+02 Score=24.93 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=77.0
Q ss_pred ccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEecCC--------Ce---EEEE-EecCcCCCHHHHHHH
Q 017358 199 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK--------GL---VVPV-IRNSERMNFAEIEKE 266 (373)
Q Consensus 199 klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~~~--------GL---~vpv-I~~a~~~sl~eia~~ 266 (373)
++|.+.+++-|.+.+|.++-. +.+-+|+.+..-+ |. .+|+ +......++.++.++
T Consensus 231 ~~t~~~~l~aa~~~~L~~~~g-------------~dv~ig~~~~~R~~~~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~ 297 (436)
T 1l5a_A 231 QIGWPDALVALCALYLESAEP-------------DAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQ 297 (436)
T ss_dssp TCCHHHHHHHHHHHHHHHHST-------------TCCEEEEEECCCTTSGGGGSCSCCCEEEEEECCCCTTCBHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhC-------------CceEEeeecccCCChHHhcCcceEEEEEEEEEecCCCCCHHHHHHH
Confidence 789999999999999988632 2455666654211 32 4565 344556799999999
Q ss_pred HHHHHHHhhcC-CCCcc-------------ccCCCeEEEEeCCCC--CCCCcccccCCCcceEEEeeeeEEEEE-Ee-CC
Q 017358 267 ISTLAKKANDG-SISID-------------EMAGGTFTISNGGVY--GSLLSTPIINPPQSAILGMHSIVNRPM-VV-GG 328 (373)
Q Consensus 267 ~~~l~~~ar~g-~l~~~-------------d~~ggTftISnlG~~--G~~~~tpii~pp~~aIL~vG~i~~~pv-v~-dG 328 (373)
+++....+.+. ....+ .+..-.|++.+...- +....... .+..+...+-.+ +. ..
T Consensus 298 v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~l~v~~~~ 370 (436)
T 1l5a_A 298 SGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELK-------VLASGSAEGINFTFRGSP 370 (436)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEE-------EEEECCCCSEEEEEEECT
T ss_pred HHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEE-------ecCCCCccceEEEEEecC
Confidence 88765555332 22111 122233444332211 00000000 011111111000 11 00
Q ss_pred eEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 329 NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 329 ~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
...+.+.+.+|-.+.+...+.++++.+...|+
T Consensus 371 ----~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~ 402 (436)
T 1l5a_A 371 ----QHELCLDITADLASYPQSHWQSHCERFPRFFE 402 (436)
T ss_dssp ----TSCEEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEEEeChhhCCHHHHHHHHHHHHHHHH
Confidence 12367999999999999999888888777664
No 121
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=26.51 E-value=32 Score=38.77 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=23.2
Q ss_pred CeeeEeEEeecCCCeeecCCceeee
Q 017358 103 TDGTLAKFLKQPGDRVEMDEPIAQI 127 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~gd~l~~v 127 (373)
..|+|.++++++||.|+.||+|++|
T Consensus 1211 ~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1211 KSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4699999999999999999999986
No 122
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.50 E-value=3.4e+02 Score=30.23 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=78.5
Q ss_pred ccchHHHHHHHHHHHHhcCccceEEEeCCeeEEcCCccEEEEEec-C----C-----Ce---EEEE-EecCcCCCHHHHH
Q 017358 199 KLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGT-K----K-----GL---VVPV-IRNSERMNFAEIE 264 (373)
Q Consensus 199 klS~~~~likAva~Al~~~P~~N~~i~~~~i~~~d~inIgvAV~~-~----~-----GL---~vpv-I~~a~~~sl~eia 264 (373)
++|++.+++-|.+..|.++-.- +++-+|++++. + + |. ++|+ +.-....++.++.
T Consensus 251 ~~T~~~vllaa~a~~L~r~tg~------------~dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ll 318 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRYQQS------------GDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLL 318 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTC------------SEEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCC------------CCEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHHHH
Confidence 7899999999999999876211 22445666642 1 1 32 3555 4455678999999
Q ss_pred HHHHHHHHHhhcCC-CCcc---------ccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEE--E-EEEeCCeEe
Q 017358 265 KEISTLAKKANDGS-ISID---------EMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVN--R-PMVVGGNVV 331 (373)
Q Consensus 265 ~~~~~l~~~ar~g~-l~~~---------d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~--~-pvv~dG~i~ 331 (373)
+++++....+.+.. ...+ .+....|.+.|.+.-+........+.....-+.+....+ - ..+.+|
T Consensus 319 ~~v~~~~~~a~~hq~~p~~~i~~~l~~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~--- 395 (1304)
T 2vsq_A 319 KRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPG--- 395 (1304)
T ss_dssp HHHHHHHHHHGGGTTSCHHHHHHSSSCSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECS---
T ss_pred HHHHHHHHHhhhcccCCHHHHHHHhCCCcccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecC---
Confidence 99987665554432 2211 122223333333211000000000000000000000000 0 001111
Q ss_pred EEcEEEEEEEEcccccChHHHHHHHHHHHHHh----cChhh
Q 017358 332 PRPMMYIALTYDHRLIDGREAVFFLRRIKDIV----EDPRR 368 (373)
Q Consensus 332 ~r~~m~lslt~DHRvvDGa~aarFl~~lk~~L----e~P~~ 368 (373)
.-+.+.+.+|-.+.|-..+.++++.+..+| ++|+.
T Consensus 396 --~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~ 434 (1304)
T 2vsq_A 396 --DEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQ 434 (1304)
T ss_dssp --SSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred --CcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccc
Confidence 136689999999999999988887776666 45654
No 123
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=25.90 E-value=6e+02 Score=28.14 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=25.0
Q ss_pred EEEEEEcccccChHHHHHHHHHHHHHhc
Q 017358 337 YIALTYDHRLIDGREAVFFLRRIKDIVE 364 (373)
Q Consensus 337 ~lslt~DHRvvDGa~aarFl~~lk~~Le 364 (373)
-+-+++||-++||+-...++++|.+..+
T Consensus 140 ~l~~~~HHii~DG~S~~~l~~el~~~Y~ 167 (1304)
T 2vsq_A 140 EWVWSYHHIILDGWCFGIVVQDLFKVYN 167 (1304)
T ss_dssp EEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCceeechhhHHHHHHHHHHHHH
Confidence 3779999999999999999999988764
No 124
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=22.84 E-value=66 Score=31.44 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEEcccccChHHHHHHHHHHHHHhcC
Q 017358 338 IALTYDHRLIDGREAVFFLRRIKDIVED 365 (373)
Q Consensus 338 lslt~DHRvvDGa~aarFl~~lk~~Le~ 365 (373)
+-+++||-++||+-...|+++|.+..+.
T Consensus 216 l~~~~HH~i~Dg~S~~~l~~el~~~Y~~ 243 (520)
T 2jgp_A 216 LFTDMHHSISDGVSSGILLAEWVQLYQG 243 (520)
T ss_dssp EEEEEBGGGCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEccceeecHhHHHHHHHHHHHHHcc
No 125
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=22.46 E-value=41 Score=29.74 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.5
Q ss_pred ecCCCeeecCCceeeeecCceeeEEecCCCceee
Q 017358 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (373)
Q Consensus 112 ~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~ 145 (373)
+++|+.|++||+|+ .|.+. -|+.+|++.
T Consensus 85 V~dG~~V~~GdvLA---Kd~AI---iaEIdG~V~ 112 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KNEEY---ICELDGKIV 112 (193)
T ss_dssp CCTTCEECTTSBSS---TTSCS---BCCSSEEEE
T ss_pred cCCCCEEcCCCEEe---cCCeE---EEccceEEE
Confidence 78999999999999 44444 488888876
No 126
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.92 E-value=58 Score=29.24 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=26.3
Q ss_pred CeeeEeEEeecCCCeeecC--Cceeeeec-CceeeEE
Q 017358 103 TDGTLAKFLKQPGDRVEMD--EPIAQIET-DKVTIDV 136 (373)
Q Consensus 103 ~eg~i~~w~~~~Gd~V~~g--d~l~~vEt-dK~~~ei 136 (373)
-.|.|.++.+++|+.|.+| ++|+.|.. ++..+++
T Consensus 137 ~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~l~v~~ 173 (277)
T 2f1m_A 137 ISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDV 173 (277)
T ss_dssp SCEEECCCSSCBTCEECTTCSSCSEEEEECSSEEEEE
T ss_pred CCeEEEeEEcCCCCEEcCCCCceeEEEecCCcEEEEE
Confidence 3589999999999999999 58998854 5544443
No 127
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=20.67 E-value=47 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.3
Q ss_pred eeeEeEEeecCCCeeecCCceeeeecC
Q 017358 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (373)
Q Consensus 104 eg~i~~w~~~~Gd~V~~gd~l~~vEtd 130 (373)
-+-+.++.|++|+.|++||+|..+-..
T Consensus 129 Y~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 129 YQSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEEESEESCCTTCEECTTCEEEECBCC
T ss_pred EecCCccccCCCCEECCCCEEEEeCCc
Confidence 455667889999999999999998543
No 128
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=20.51 E-value=48 Score=31.17 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.9
Q ss_pred eEeEEeecCCCeeecCCceeeeec
Q 017358 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (373)
Q Consensus 106 ~i~~w~~~~Gd~V~~gd~l~~vEt 129 (373)
-+.+..|++||.|++||+|..+-.
T Consensus 235 HLs~i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 235 HNNRLTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp EESEECCCTTCEECTTCEEEECCC
T ss_pred cCCccccCCcCEECCCCEEEEECC
Confidence 345678999999999999998843
No 129
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=20.34 E-value=48 Score=30.92 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.2
Q ss_pred eEeEEeecCCCeeecCCceeeee
Q 017358 106 TLAKFLKQPGDRVEMDEPIAQIE 128 (373)
Q Consensus 106 ~i~~w~~~~Gd~V~~gd~l~~vE 128 (373)
-+.+..|++||.|++||+|..+-
T Consensus 228 HL~~i~V~~G~~V~~Gq~IG~vG 250 (282)
T 2hsi_A 228 HLSKIDVKLGQQVPRGGVLGKVG 250 (282)
T ss_dssp EESEECSCTTCEECTTCEEEECC
T ss_pred CCCccccCCcCEECCCCEEEEEC
Confidence 34466899999999999999874
Done!