Query 017359
Match_columns 373
No_of_seqs 219 out of 678
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1507 Nucleosome assembly pr 100.0 2.3E-91 5E-96 678.8 20.1 295 1-305 1-342 (358)
2 PTZ00007 (NAP-L) nucleosome as 100.0 4.8E-75 1E-79 572.3 24.7 250 39-307 27-284 (337)
3 PF00956 NAP: Nucleosome assem 100.0 3.5E-61 7.7E-66 456.8 17.3 239 52-302 1-244 (244)
4 PTZ00008 (NAP-S) nucleosome as 100.0 5.5E-55 1.2E-59 399.8 14.4 180 67-306 2-184 (185)
5 KOG1508 DNA replication factor 99.9 4.7E-28 1E-32 232.7 9.9 203 43-304 22-225 (260)
6 PF10446 DUF2457: Protein of u 94.8 0.0099 2.1E-07 61.3 0.8 8 299-306 41-48 (458)
7 PF11629 Mst1_SARAH: C termina 94.7 0.18 3.8E-06 37.1 6.8 36 58-93 10-45 (49)
8 PF06524 NOA36: NOA36 protein; 92.9 0.081 1.8E-06 51.5 2.9 10 201-210 185-194 (314)
9 KOG1189 Global transcriptional 92.5 0.46 1E-05 52.3 8.2 109 54-174 693-808 (960)
10 PF04931 DNA_pol_phi: DNA poly 91.8 0.1 2.2E-06 58.0 2.5 26 46-71 334-359 (784)
11 PF04931 DNA_pol_phi: DNA poly 90.4 0.16 3.5E-06 56.5 2.3 9 287-295 617-625 (784)
12 PF03066 Nucleoplasmin: Nucleo 88.7 0.13 2.8E-06 46.2 0.0 23 170-192 17-41 (149)
13 KOG3064 RNA-binding nuclear pr 81.9 1 2.2E-05 44.0 2.5 54 46-99 71-128 (303)
14 PF03066 Nucleoplasmin: Nucleo 79.8 0.57 1.2E-05 42.0 0.0 6 187-192 17-22 (149)
15 KOG1832 HIV-1 Vpr-binding prot 78.5 1.1 2.4E-05 50.5 1.7 9 203-211 1304-1312(1516)
16 PF07352 Phage_Mu_Gam: Bacteri 76.8 13 0.00027 33.0 7.7 49 51-99 5-53 (149)
17 KOG0943 Predicted ubiquitin-pr 71.5 2.4 5.2E-05 49.2 2.1 20 73-92 1440-1459(3015)
18 PF07195 FliD_C: Flagellar hoo 64.1 38 0.00083 32.1 8.4 62 22-86 169-230 (239)
19 PRK06798 fliD flagellar cappin 61.5 30 0.00064 36.3 7.7 74 5-84 330-414 (440)
20 COG4396 Mu-like prophage host- 57.9 24 0.00052 31.7 5.3 50 49-98 18-67 (170)
21 PF11333 DUF3135: Protein of u 57.9 53 0.0012 26.7 7.0 66 20-94 14-79 (83)
22 PF14389 Lzipper-MIP1: Leucine 57.5 39 0.00084 27.6 6.2 60 24-94 29-88 (88)
23 PF05764 YL1: YL1 nuclear prot 56.4 10 0.00022 36.4 3.1 7 308-314 41-47 (240)
24 PTZ00415 transmission-blocking 53.6 8.7 0.00019 46.4 2.3 14 203-218 78-91 (2849)
25 PF07361 Cytochrom_B562: Cytoc 52.6 17 0.00037 30.5 3.5 42 47-88 51-103 (103)
26 PF07516 SecA_SW: SecA Wing an 51.9 58 0.0013 30.3 7.3 46 56-101 9-54 (214)
27 KOG2038 CAATT-binding transcri 51.8 8.3 0.00018 43.1 1.7 10 173-182 692-701 (988)
28 PRK08032 fliD flagellar cappin 49.0 62 0.0013 34.0 7.7 57 24-84 385-441 (462)
29 PTZ00415 transmission-blocking 47.7 14 0.00031 44.7 2.8 7 290-296 131-137 (2849)
30 KOG3647 Predicted coiled-coil 47.6 1E+02 0.0022 30.8 8.2 47 45-91 136-185 (338)
31 PF03938 OmpH: Outer membrane 44.7 1.2E+02 0.0027 26.3 7.8 51 46-98 72-122 (158)
32 cd00179 SynN Syntaxin N-termin 43.5 2E+02 0.0044 24.6 9.0 40 62-101 87-129 (151)
33 PF00611 FCH: Fes/CIP4, and EF 43.3 1.1E+02 0.0024 23.7 6.7 30 70-99 29-58 (91)
34 PF03344 Daxx: Daxx Family; I 43.2 7.9 0.00017 43.0 0.0 15 21-35 85-99 (713)
35 KOG3540 Beta amyloid precursor 43.1 19 0.00041 38.3 2.7 13 289-301 172-184 (615)
36 smart00502 BBC B-Box C-termina 40.8 1.4E+02 0.003 24.2 7.2 54 46-99 11-64 (127)
37 PF03115 Astro_capsid: Astrovi 40.8 9.1 0.0002 43.0 0.0 8 240-247 587-594 (787)
38 PF12998 ING: Inhibitor of gro 40.0 60 0.0013 26.3 4.8 28 42-69 8-35 (105)
39 PF07106 TBPIP: Tat binding pr 39.8 1.6E+02 0.0035 26.3 7.9 24 74-98 145-168 (169)
40 PF14197 Cep57_CLD_2: Centroso 38.3 1.3E+02 0.0028 23.6 6.1 58 24-82 5-62 (69)
41 PRK15422 septal ring assembly 38.2 1.3E+02 0.0029 24.4 6.2 33 40-72 2-34 (79)
42 PRK06664 fliD flagellar hook-a 37.4 1.1E+02 0.0025 33.8 7.7 28 58-85 609-636 (661)
43 PRK08724 fliD flagellar cappin 35.4 1.7E+02 0.0037 32.7 8.6 71 8-88 571-652 (673)
44 KOG2038 CAATT-binding transcri 35.0 22 0.00047 40.0 1.7 9 240-248 803-812 (988)
45 PF05285 SDA1: SDA1; InterPro 34.4 20 0.00044 35.9 1.3 6 241-246 26-31 (324)
46 PF03344 Daxx: Daxx Family; I 34.4 13 0.00029 41.3 0.0 10 166-175 263-272 (713)
47 PF10417 1-cysPrx_C: C-termina 34.3 12 0.00027 26.1 -0.2 15 201-215 9-23 (40)
48 PRK10780 periplasmic chaperone 34.2 2.2E+02 0.0047 25.5 7.9 18 81-98 112-129 (165)
49 KOG0574 STE20-like serine/thre 34.2 43 0.00094 34.2 3.5 38 56-93 454-491 (502)
50 COG3883 Uncharacterized protei 33.7 2.6E+02 0.0056 27.7 8.7 22 123-144 114-135 (265)
51 KOG1189 Global transcriptional 33.6 31 0.00067 38.7 2.6 17 54-70 567-583 (960)
52 PTZ00007 (NAP-L) nucleosome as 32.2 57 0.0012 33.2 4.1 23 60-82 59-81 (337)
53 COG3074 Uncharacterized protei 31.6 2.7E+02 0.0059 22.3 7.3 33 40-72 2-34 (79)
54 smart00055 FCH Fes/CIP4 homolo 31.5 2.5E+02 0.0053 21.8 7.3 24 70-93 29-52 (87)
55 PRK11546 zraP zinc resistance 31.2 1.4E+02 0.0029 26.9 5.9 20 38-57 35-54 (143)
56 PF05600 DUF773: Protein of un 30.4 1.2E+02 0.0026 32.5 6.3 72 49-140 127-202 (507)
57 KOG1991 Nuclear transport rece 30.4 29 0.00062 39.8 1.8 17 21-37 496-512 (1010)
58 PF06464 DMAP_binding: DMAP1-b 29.6 82 0.0018 26.8 4.1 39 44-85 2-43 (111)
59 PTZ00329 eukaryotic translatio 29.2 41 0.00088 30.6 2.2 12 285-296 103-114 (155)
60 KOG3241 Uncharacterized conser 28.5 40 0.00086 31.6 2.1 14 77-91 52-65 (227)
61 KOG3958 Putative dynamitin [Cy 26.9 2.9E+02 0.0062 28.1 7.7 48 46-98 295-342 (371)
62 KOG1991 Nuclear transport rece 26.1 39 0.00086 38.8 1.9 9 240-248 817-826 (1010)
63 PF15372 DUF4600: Domain of un 26.0 4.7E+02 0.01 23.2 9.5 72 25-99 23-100 (129)
64 PF03896 TRAP_alpha: Transloco 24.1 41 0.00088 33.5 1.4 13 290-302 14-26 (285)
65 PF06005 DUF904: Protein of un 23.9 3.7E+02 0.0079 21.2 7.1 46 42-87 4-52 (72)
66 COG0497 RecN ATPase involved i 23.6 4.2E+02 0.0091 29.0 8.9 78 20-98 293-373 (557)
67 PF15290 Syntaphilin: Golgi-lo 23.5 2.6E+02 0.0057 28.0 6.7 17 143-159 141-157 (305)
68 PRK01546 hypothetical protein; 22.9 1.3E+02 0.0029 24.4 3.8 44 47-91 2-45 (79)
69 KOG4484 Uncharacterized conser 22.8 4.9E+02 0.011 24.3 7.9 48 17-67 18-66 (199)
70 PRK02539 hypothetical protein; 22.7 1.4E+02 0.0031 24.6 4.0 44 47-91 1-44 (85)
71 TIGR03042 PS_II_psbQ_bact phot 21.5 5E+02 0.011 23.3 7.6 59 13-71 55-114 (142)
72 PF07426 Dynactin_p22: Dynacti 21.1 3.3E+02 0.0071 25.1 6.6 59 31-90 104-163 (174)
73 PF07195 FliD_C: Flagellar hoo 20.9 1.7E+02 0.0036 27.8 4.8 22 6-29 134-155 (239)
74 KOG3241 Uncharacterized conser 20.7 79 0.0017 29.7 2.4 20 169-189 18-37 (227)
75 COG3860 Uncharacterized protei 20.7 1.2E+02 0.0025 25.1 3.1 56 40-98 16-71 (89)
76 COG1382 GimC Prefoldin, chaper 20.2 2.8E+02 0.0061 24.2 5.6 28 44-71 1-28 (119)
77 PF15243 ANAPC15: Anaphase-pro 20.1 73 0.0016 26.6 1.9 8 298-305 53-60 (92)
No 1
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.3e-91 Score=678.81 Aligned_cols=295 Identities=55% Similarity=0.902 Sum_probs=264.1
Q ss_pred CCCCCCCCchhhhhhh------------------hC------cccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHH
Q 017359 1 MSADKDNFNVTDLRAS------------------LD------EGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVE 56 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~------------------~~------~~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~ 56 (373)
|||.+++++++++.++ +. ...+|.++++++.||++|+++++++|++||++||+||.
T Consensus 1 msn~k~s~~~sd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~ 80 (358)
T KOG1507|consen 1 MSNDKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVL 80 (358)
T ss_pred CCCccccccccccCCCCCCCcccccccccccccccccccccccccChhhhcccchhhhcccCCCchhhhhcCHHHHHHHH
Confidence 8999999999988765 22 12356699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhh------------hhhhhhccCC
Q 017359 57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGV 124 (373)
Q Consensus 57 aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~------------~~~~~~~kgI 124 (373)
|||+||.++..|+++|+++++.||+||+++|+|||+||++||+|.++|+++++++... ......+|||
T Consensus 81 aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGI 160 (358)
T KOG1507|consen 81 ALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGI 160 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCC
Confidence 9999999999999999999999999999999999999999999999999877654211 1122467999
Q ss_pred CcchHHHHhhchhhhhhcchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCcccceeeeEEeec---cCCCc----
Q 017359 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP---- 196 (373)
Q Consensus 125 P~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed~-~gF~L~F~F~~NpYF~N~vLtKty~l~---~~~dp---- 196 (373)
|+||||||+|+++|++||+++|++||+||+||++.+.+++ +||+|+|||+|||||+|+||||||+|+ +..+|
T Consensus 161 P~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~ 240 (358)
T KOG1507|consen 161 PDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFD 240 (358)
T ss_pred chHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccC
Confidence 9999999999999999999999999999999999999877 699999999999999999999999998 55556
Q ss_pred --ceecccceeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhcc
Q 017359 197 --ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQD 273 (373)
Q Consensus 197 --~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D 273 (373)
.+++|+||.|+|++|||||+++++|||| ||++++|+|+|+++++||||||+||.+| +.++.|++.+ +++|+.|
T Consensus 241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~D 316 (358)
T KOG1507|consen 241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELD 316 (358)
T ss_pred CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhh
Confidence 6889999999999999999999888765 7889999999999999999999999999 4444444322 8899999
Q ss_pred ccchhHHhhhhhhcccccccchhhhccccccc
Q 017359 274 YDIGSIALCRSTIRDKIIPHAVSWFTGEAIQE 305 (373)
Q Consensus 274 ~eig~~~~~~~~ikd~IiP~AV~yftGea~~~ 305 (373)
|+||+ +||++|||+||.||||+|++.
T Consensus 317 yeIG~------~lr~~IIPrAV~~fTGea~e~ 342 (358)
T KOG1507|consen 317 YEIGE------TLRDKIIPRAVLWFTGEALED 342 (358)
T ss_pred HHHHH------HHHhhhhhheeeeeccccccc
Confidence 99999 999999999999999999554
No 2
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=4.8e-75 Score=572.27 Aligned_cols=250 Identities=44% Similarity=0.757 Sum_probs=227.2
Q ss_pred CCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhh
Q 017359 39 QHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKA 118 (373)
Q Consensus 39 ~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~ 118 (373)
..+++|.+||+.||+||.+|+.||.++..|+++|++++++|++||+++|+|||++|++||+|..++.
T Consensus 27 ~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e------------- 93 (337)
T PTZ00007 27 LDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAE------------- 93 (337)
T ss_pred cccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccc-------------
Confidence 3788999999999999999999999999999999999999999999999999999999999964321
Q ss_pred hhccCCCcchHHHHhhchhhhhhcchhhHHhhccccccEEEEeCCC--CceEEEEEeCCCCCcccceeeeEEeecc---C
Q 017359 119 TEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP--KGFKLEFYFDPNPYFKNSVLTKTYHMID---E 193 (373)
Q Consensus 119 ~~~kgIP~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed~--~gF~L~F~F~~NpYF~N~vLtKty~l~~---~ 193 (373)
..++|||+||++||+||+.|+.+|+++|++||+||+||+|+++... +||+|+|+|++||||+|++|||+|+|.. .
T Consensus 94 ~~~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~ 173 (337)
T PTZ00007 94 IGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGD 173 (337)
T ss_pred cccCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCC
Confidence 2247999999999999999999999999999999999999987543 6999999999999999999999999964 2
Q ss_pred CCcceecccceeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCC--CCChhhHHHHHHhh
Q 017359 194 DEPILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDE--DIDEDTAEELQNQM 270 (373)
Q Consensus 194 ~dp~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~--~~dee~~eel~~~l 270 (373)
+.|++.+++||+|+||+|||||+++++|||| |+++.+|+|+++++++||||||+||.+|..++ .+++++.++++++|
T Consensus 174 ~~p~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l 253 (337)
T PTZ00007 174 DEPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIV 253 (337)
T ss_pred CCceeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHH
Confidence 3577789999999999999999999998876 66778899999999999999999999987553 34556677899999
Q ss_pred hccccchhHHhhhhhhcccccccchhhhccccccccc
Q 017359 271 EQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEE 307 (373)
Q Consensus 271 ~~D~eig~~~~~~~~ikd~IiP~AV~yftGea~~~dd 307 (373)
+.||+||+ +||++|||+||.||||+|+++++
T Consensus 254 ~~DyeiG~------~ikd~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 254 ETDYEIGI------TIRDKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred HHhHHHHH------HHHHhcccccHHhhCCCcccccc
Confidence 99999999 99999999999999999998765
No 3
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=3.5e-61 Score=456.80 Aligned_cols=239 Identities=49% Similarity=0.867 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHH
Q 017359 52 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTA 131 (373)
Q Consensus 52 ~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWlta 131 (373)
|+||.+|+.||.++..|+.+|.+++++|+++|.++++|||++|++||+|.++++. +..... ... .++|||+||++|
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~--~~~~~~-~~~-~~~gIP~FW~~v 76 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTE--IEWEER-QEE-KPKGIPGFWLTV 76 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---H--HHH------S-SSTTSTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccccc--ccccch-hhc-cccCCCCccccc
Confidence 6899999999999999999999999999999999999999999999999888764 211100 001 268999999999
Q ss_pred HhhchhhhhhcchhhHHhhccccccEEEEeCC-CCceEEEEEeCCCCCcccceeeeEEeeccCCC---cceecccceeee
Q 017359 132 MKNNDVLSEEITERDEGALKFLKDIKWFRIDD-PKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---PILEKAIGTEIE 207 (373)
Q Consensus 132 L~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed-~~gF~L~F~F~~NpYF~N~vLtKty~l~~~~d---p~~~~~~gt~I~ 207 (373)
|+||+.++.+|+++|.+||+||+||+|++... +++|+|+|+|++||||+|++|+|+|+|...++ |...++++|+|+
T Consensus 77 l~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~ 156 (244)
T PF00956_consen 77 LKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPID 156 (244)
T ss_dssp HHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---E
T ss_pred cccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeeccc
Confidence 99999999999999999999999999999876 67999999999999999999999999987654 211589999999
Q ss_pred ecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhccccchhHHhhhhhh
Q 017359 208 WYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTI 286 (373)
Q Consensus 208 WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eig~~~~~~~~i 286 (373)
||+|||+|++++++|++ ++++.+|+++++++.+|||+||+|+.+|+++++.++ .++.+..+..||+||. +|
T Consensus 157 Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~--~~~~~~~~~~d~ei~~------~i 228 (244)
T PF00956_consen 157 WKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEE--DEDEEEEIEDDFEIGE------II 228 (244)
T ss_dssp BSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSST--CHHHHHHHHHHHHHHH------HH
T ss_pred ccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccc--hhhHHHHhhccHHHHH------HH
Confidence 99999999999887755 566788999999999999999999998865443222 2345677899999999 99
Q ss_pred cccccccchhhhcccc
Q 017359 287 RDKIIPHAVSWFTGEA 302 (373)
Q Consensus 287 kd~IiP~AV~yftGea 302 (373)
+++|||+||.||||+|
T Consensus 229 ~d~i~P~av~yy~gea 244 (244)
T PF00956_consen 229 KDDIIPNAVKYYTGEA 244 (244)
T ss_dssp HHTCCCHHHHHHHTCT
T ss_pred HhheechHHHHhCCCC
Confidence 9999999999999997
No 4
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=5.5e-55 Score=399.77 Aligned_cols=180 Identities=22% Similarity=0.425 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHHHhhchhhhhhcchhh
Q 017359 67 ELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERD 146 (373)
Q Consensus 67 ~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWltaL~N~~~ls~~I~e~D 146 (373)
+|+.+|.+++++|+++|.++++|||++|++|| +|||+||++||+||+.++ +|+++|
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II-----------------------~gIP~FW~~vl~n~~~~~-~I~~~D 57 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEII-----------------------EKIPGFWADTLRRHPALS-YLVPED 57 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------hcCccHHHHHHHcCcccc-ccCHHH
Confidence 57899999999999999999999999999999 799999999999999999 999999
Q ss_pred HHhhccccccEEEE-eCCCCceEEEEEeCC--CCCcccceeeeEEeeccCCCcceecccceeeeecCCCCcchhhhhccC
Q 017359 147 EGALKFLKDIKWFR-IDDPKGFKLEFYFDP--NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKP 223 (373)
Q Consensus 147 e~iLk~L~DI~v~~-~ed~~gF~L~F~F~~--NpYF~N~vLtKty~l~~~~dp~~~~~~gt~I~WK~GKnlT~k~~kKk~ 223 (373)
++||+||+||+|+. .+++.||+|+|+|++ ||||+|++|||+|++.++++. .+++|+|+||+|||||+++++|+
T Consensus 58 ~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~---~~~~t~I~Wk~gkn~t~~~~kk~- 133 (185)
T PTZ00008 58 IDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEK---VVEVTKIKWKEGKSPIAAAEKAR- 133 (185)
T ss_pred HHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEecCCCc---eeeeeecccCCCCCcceeeeecc-
Confidence 99999999999997 456679999999965 899999999999999765543 46899999999999999876522
Q ss_pred CCCCCCCcccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhccccchhHHhhhhhhcccccccchhhhccccc
Q 017359 224 KKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAI 303 (373)
Q Consensus 224 kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eig~~~~~~~~ikd~IiP~AV~yftGea~ 303 (373)
+ ++++++++.||||||+++..| .+|+||+ +|+++|||+||.||||+++
T Consensus 134 --~-----~~~~~~~~~SFF~fF~~~~~~-------------------~~~eIg~------~i~e~i~P~av~yy~ge~~ 181 (185)
T PTZ00008 134 --S-----DLDDECIVWSIFEWFTEEEWQ-------------------DRPDVGE------IIRREIWHAPLLYYLDTVS 181 (185)
T ss_pred --C-----ccccCCCCCChhhcCCCCccc-------------------CcHHHHH------HHHHhhccchHHhhCCccc
Confidence 1 456778899999999986433 2578999 9999999999999999988
Q ss_pred ccc
Q 017359 304 QEE 306 (373)
Q Consensus 304 ~~d 306 (373)
+++
T Consensus 182 ~~~ 184 (185)
T PTZ00008 182 IDD 184 (185)
T ss_pred ccc
Confidence 764
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=99.95 E-value=4.7e-28 Score=232.66 Aligned_cols=203 Identities=32% Similarity=0.576 Sum_probs=174.4
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhcc
Q 017359 43 VLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEK 122 (373)
Q Consensus 43 ~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~k 122 (373)
.+..-...+...+..|..||.+++.++++..++++.|+++|....+|+|.+|+.|| +
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii-----------------------~ 78 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELI-----------------------K 78 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHH-----------------------h
Confidence 34556778889999999999999999999999999999999999999999999999 8
Q ss_pred CCCcchHHHHhhchhhhhhcchhhHHhhccccccEEEEeCCCC-ceEEEEEeCCCCCcccceeeeEEeeccCCCcceecc
Q 017359 123 GVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKA 201 (373)
Q Consensus 123 gIP~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed~~-gF~L~F~F~~NpYF~N~vLtKty~l~~~~dp~~~~~ 201 (373)
.||+||.+++.||+.++.+|..+|..+|.||..+.|..+.+.. ||++.|+|.+|+||+|.+++|+|++...+.+ .+
T Consensus 79 ~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~---~s 155 (260)
T KOG1508|consen 79 EIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKP---SS 155 (260)
T ss_pred hcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCc---cc
Confidence 8999999999999999999999999999999999999877655 9999999999999999999999999888776 57
Q ss_pred cceeeeecCCCCcchhhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhccccchhHHh
Q 017359 202 IGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIAL 281 (373)
Q Consensus 202 ~gt~I~WK~GKnlT~k~~kKk~kkg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eig~~~~ 281 (373)
.+|+|.|+.|+++...... ...++++ ...+.|||.||+....++. | +|++
T Consensus 156 ~~t~i~w~~~~~~~~~~~~--~~~~~k~------~~~~~s~f~wf~~~~~~~~------------------d-~i~e--- 205 (260)
T KOG1508|consen 156 ESTPISWKEGKPLPNPVKR--GELKNKN------GDGPKSFFEWFSDTSLKEF------------------D-EILE--- 205 (260)
T ss_pred ccccccccCCCCCcccccc--ccccccc------CcccccHHHHHHhccCCCc------------------c-chhh---
Confidence 8999999999988765431 1111111 1247899999999877651 1 4778
Q ss_pred hhhhhcccccccchhhhcccccc
Q 017359 282 CRSTIRDKIIPHAVSWFTGEAIQ 304 (373)
Q Consensus 282 ~~~~ikd~IiP~AV~yftGea~~ 304 (373)
.|++.++|+++.||+-....
T Consensus 206 ---i~~~~~~~~~~~~~~~~~~~ 225 (260)
T KOG1508|consen 206 ---IIKDELWPNPLQYYLEPDGE 225 (260)
T ss_pred ---hhhcccccchhhhhcccccc
Confidence 99999999999999854433
No 6
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=94.82 E-value=0.0099 Score=61.33 Aligned_cols=8 Identities=50% Similarity=0.709 Sum_probs=3.7
Q ss_pred cccccccc
Q 017359 299 TGEAIQEE 306 (373)
Q Consensus 299 tGea~~~d 306 (373)
+|+-++++
T Consensus 41 LgeEaEEE 48 (458)
T PF10446_consen 41 LGEEAEEE 48 (458)
T ss_pred hhHHHHHH
Confidence 44444444
No 7
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=94.72 E-value=0.18 Score=37.15 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017359 58 LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 58 Lk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~k 93 (373)
+..||..+..|...+..|+.+|.+.|+.+.+||.+.
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 567788999999999999999999999999999874
No 8
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=92.87 E-value=0.081 Score=51.47 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=4.4
Q ss_pred ccceeeeecC
Q 017359 201 AIGTEIEWYP 210 (373)
Q Consensus 201 ~~gt~I~WK~ 210 (373)
+--|.|-+=+
T Consensus 185 CLRCK~cfCd 194 (314)
T PF06524_consen 185 CLRCKICFCD 194 (314)
T ss_pred hhheeeeehh
Confidence 3344554433
No 9
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=92.48 E-value=0.46 Score=52.32 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=58.4
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhhhhhhhhccCCCcchHHH
Q 017359 54 RVEVLREIQS--EHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTA 131 (373)
Q Consensus 54 rv~aLk~LQ~--e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgIP~FWlta 131 (373)
-+..|-.-+. ..++|..+ ++-....++.+..++.+-.+-.+.-++..+... .-..-.-.|+|.= .+|
T Consensus 693 iv~dlg~~~~~~D~del~~E--Q~Er~rr~~ln~~FksF~~kv~~~~~~~~efd~--------pfr~lGF~GvP~r-ssv 761 (960)
T KOG1189|consen 693 IVTDLGKRRRMGDRDELEQE--QEERDRRAKLNMAFKSFAEKVAEATESELEFDV--------PFRELGFNGVPFR-SSV 761 (960)
T ss_pred HHHhhccCccccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccceeecc--------chhhcCcCCCCcc-cee
Confidence 3445544444 34444333 233344555566666666666666555444320 0001122466633 333
Q ss_pred HhhchhhhhhcchhhHHhh-ccccccEEEEeC----CCCceEEEEEeC
Q 017359 132 MKNNDVLSEEITERDEGAL-KFLKDIKWFRID----DPKGFKLEFYFD 174 (373)
Q Consensus 132 L~N~~~ls~~I~e~De~iL-k~L~DI~v~~~e----d~~gF~L~F~F~ 174 (373)
|. -|.-+++++-.+.|.| -.|.+|.+..++ ..+.|-+.|.|+
T Consensus 762 ~i-~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfK 808 (960)
T KOG1189|consen 762 FI-QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFK 808 (960)
T ss_pred ee-ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEec
Confidence 33 2345667766666665 688888887664 346888999994
No 10
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.80 E-value=0.1 Score=57.97 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 46 KLTPAVRKRVEVLREIQSEHDELEAK 71 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~LQ~e~~~le~k 71 (373)
++....-.++.-++.++.-+..+..+
T Consensus 334 ~~g~q~fd~~t~~k~i~~il~~~~~~ 359 (784)
T PF04931_consen 334 SLGNQNFDQITKTKTIEQILLSLDVD 359 (784)
T ss_pred cccchHHHHHHHHHHHHHHHhccchH
Confidence 33333334455555555444444333
No 11
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=90.39 E-value=0.16 Score=56.46 Aligned_cols=9 Identities=0% Similarity=0.058 Sum_probs=3.6
Q ss_pred cccccccch
Q 017359 287 RDKIIPHAV 295 (373)
Q Consensus 287 kd~IiP~AV 295 (373)
...|-+.+|
T Consensus 617 ~~~~t~~~l 625 (784)
T PF04931_consen 617 CPHLTESGL 625 (784)
T ss_pred HhhcCHHHH
Confidence 333444444
No 12
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=88.70 E-value=0.13 Score=46.15 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=11.4
Q ss_pred EEEeCC--CCCcccceeeeEEeecc
Q 017359 170 EFYFDP--NPYFKNSVLTKTYHMID 192 (373)
Q Consensus 170 ~F~F~~--NpYF~N~vLtKty~l~~ 192 (373)
.++|++ |.--.....-++..+..
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lga 41 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLGA 41 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-T
T ss_pred eEEEeCCCCCCcccEEEEEEeecCC
Confidence 466766 44444444456666643
No 13
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=81.95 E-value=1 Score=44.01 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 017359 46 KLTPAVRKRVEVLREIQSEHDELEAKF----FEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~LQ~e~~~le~kf----~~E~~~LE~KY~k~~~Ply~kR~eII~ 99 (373)
++|...-.||.-=++...-+..|...+ ..-+|++.+++-++.|-|..-|+=-+.
T Consensus 71 H~P~klwErikLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rklalr 128 (303)
T KOG3064|consen 71 HMPRKLWERIKLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKLALR 128 (303)
T ss_pred cCcHHHHHHHhcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777776666666666665554 345788888888888888887776664
No 14
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=79.80 E-value=0.57 Score=42.04 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.6
Q ss_pred EEeecc
Q 017359 187 TYHMID 192 (373)
Q Consensus 187 ty~l~~ 192 (373)
.|++..
T Consensus 17 ~~~f~~ 22 (149)
T PF03066_consen 17 DYTFKV 22 (149)
T ss_dssp EEEE-T
T ss_pred eEEEeC
Confidence 555543
No 15
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.50 E-value=1.1 Score=50.46 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=4.9
Q ss_pred ceeeeecCC
Q 017359 203 GTEIEWYPG 211 (373)
Q Consensus 203 gt~I~WK~G 211 (373)
-|.|.++.-
T Consensus 1304 qc~VtFNst 1312 (1516)
T KOG1832|consen 1304 QCAVTFNST 1312 (1516)
T ss_pred ceEEEeccC
Confidence 456666553
No 16
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=76.85 E-value=13 Score=33.03 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 017359 51 VRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 51 v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~ 99 (373)
+-..+..|..||.++..+++.+..++.++...|.....||-.+...+-.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999998888773
No 17
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.52 E-value=2.4 Score=49.24 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 017359 73 FEERAALEAKYQKLYQPMYT 92 (373)
Q Consensus 73 ~~E~~~LE~KY~k~~~Ply~ 92 (373)
-.-+.+|+.+|.+.|..||-
T Consensus 1440 d~L~falenkiLkd~Sslfv 1459 (3015)
T KOG0943|consen 1440 DHLLFALENKILKDQSSLFV 1459 (3015)
T ss_pred hhhhHHHHHHHHhhhhhhhh
Confidence 34467788888888888774
No 18
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=64.08 E-value=38 Score=32.13 Aligned_cols=62 Identities=10% Similarity=0.327 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 22 RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKL 86 (373)
Q Consensus 22 ~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~ 86 (373)
..++...|..-|..+.+...+.+...-.....+ ++.|+.++..++.++......|..+|.++
T Consensus 169 ~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~---~~~~~~~i~~~~~rl~~~~~~l~~qf~~m 230 (239)
T PF07195_consen 169 TSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQ---IKSLDKQIEDLEERLESKEERLRKQFSAM 230 (239)
T ss_pred cccHHHHHHHHHHHHhCCCCcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777766656666555555444 45556677777766666666666666544
No 19
>PRK06798 fliD flagellar capping protein; Validated
Probab=61.51 E-value=30 Score=36.30 Aligned_cols=74 Identities=11% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCCCchhhhhhhhCcccchhHHHH-----------HHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 5 KDNFNVTDLRASLDEGARADLVGV-----------LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFF 73 (373)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~ 73 (373)
+-.+|-..|..||. .||.-|.. |...|..+.+ ..+.|..--.... ..++.|+.++..++.++.
T Consensus 330 ~L~lD~~kL~~al~--~np~~V~~lF~g~~Gia~~l~~~l~~~~~-~~G~i~~r~~~l~---~~i~~l~~~~~~~e~rl~ 403 (440)
T PRK06798 330 TMKVDEEALKKALK--ENPDAAKQFFFGINGLGKEMEKSLDKIFG-DEGIIGERSKSID---NRVSKLDLKITDIDTQNK 403 (440)
T ss_pred CEEEcHHHHHHHHH--HCHHHHHHHhcCCCcHHHHHHHHHHhhhC-CCceeehhhhHHH---HHHHHHHHHHHHHHHHHH
Confidence 34556666777776 45655554 4566666664 3344332222222 334555666666666555
Q ss_pred HHHHHHHHHHH
Q 017359 74 EERAALEAKYQ 84 (373)
Q Consensus 74 ~E~~~LE~KY~ 84 (373)
+...+|.++|.
T Consensus 404 ~~e~~l~~qf~ 414 (440)
T PRK06798 404 QKQDNIVDKYQ 414 (440)
T ss_pred HHHHHHHHHHH
Confidence 54444555544
No 20
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=57.91 E-value=24 Score=31.69 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 49 ~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
.+|..-|..|-.||.++..|+.++..++.+++..|..+..||-..-.-+.
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~ 67 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLT 67 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHH
Confidence 35777888999999999999999999999999999999999876655444
No 21
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=57.89 E-value=53 Score=26.74 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=41.0
Q ss_pred ccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017359 20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 94 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR 94 (373)
..+|.-+.+|+.++ ..+.|++-|+..+.| |+.+|-.++..-....-=++.+-.=+.-++.-+|.-|
T Consensus 14 ~~dPe~fe~lr~~~------~ee~I~~a~~~~q~r---L~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~ 79 (83)
T PF11333_consen 14 QNDPEAFEQLRQEL------IEEMIESAPEEMQPR---LRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLN 79 (83)
T ss_pred HhCHHHHHHHHHHH------HHHHHHhCCHHHHHH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 46888888888776 245789999999988 5555666665555443333444444444444444433
No 22
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=57.52 E-value=39 Score=27.63 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017359 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKR 94 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR 94 (373)
.+-.+|..-|+.-++..+..-..||+.++.=|..+..+.. +|..||.+-..+|.-+|.+|
T Consensus 29 ~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~-----------eV~~LE~~v~~L~~~l~~q~ 88 (88)
T PF14389_consen 29 DLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEA-----------EVAKLEQKVLSLYRQLFQQR 88 (88)
T ss_pred HHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcC
Confidence 4455565555555554444446889888755555544333 45666777777777777664
No 23
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.41 E-value=10 Score=36.44 Aligned_cols=7 Identities=29% Similarity=-0.031 Sum_probs=2.8
Q ss_pred ccCCCCC
Q 017359 308 IELDDDE 314 (373)
Q Consensus 308 ~~d~~~~ 314 (373)
++++..+
T Consensus 41 D~ef~~~ 47 (240)
T PF05764_consen 41 DEEFESE 47 (240)
T ss_pred CccccCC
Confidence 3444433
No 24
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=53.59 E-value=8.7 Score=46.36 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=7.6
Q ss_pred ceeeeecCCCCcchhh
Q 017359 203 GTEIEWYPGKCLTQKL 218 (373)
Q Consensus 203 gt~I~WK~GKnlT~k~ 218 (373)
|..|.. |++..+++
T Consensus 78 ~~~i~m--~~~~~~~~ 91 (2849)
T PTZ00415 78 GDAIRM--GKDTSVKI 91 (2849)
T ss_pred cCceee--ccccccce
Confidence 445555 56665553
No 25
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=52.58 E-value=17 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 017359 47 LTPAVRKRVEVLREIQSEHDELEAKF-----------FEERAALEAKYQKLYQ 88 (373)
Q Consensus 47 Lp~~v~~rv~aLk~LQ~e~~~le~kf-----------~~E~~~LE~KY~k~~~ 88 (373)
-.+.+..=...|..|+.+++.++... .+++..|+.+|+++|+
T Consensus 51 d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 51 DSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 44556667888999999988887644 4567778888887764
No 26
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=51.88 E-value=58 Score=30.31 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 017359 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV 101 (373)
Q Consensus 56 ~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~ 101 (373)
.+|...|.+....+-...+.+++...=-+.++.-+|..|+.|+.|.
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~~ 54 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEGE 54 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5688889999988888888888888888899999999999999765
No 27
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.77 E-value=8.3 Score=43.08 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=6.9
Q ss_pred eCCCCCcccc
Q 017359 173 FDPNPYFKNS 182 (373)
Q Consensus 173 F~~NpYF~N~ 182 (373)
++.||-|-|.
T Consensus 692 r~R~P~f~nA 701 (988)
T KOG2038|consen 692 RKRNPLFCNA 701 (988)
T ss_pred ccCCccccCC
Confidence 3568888774
No 28
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=48.99 E-value=62 Score=34.05 Aligned_cols=57 Identities=11% Similarity=0.259 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~ 84 (373)
+++..|...|..+.+. .|.|........ ..++.|+.+++.++.++.....+|.++|.
T Consensus 385 G~~~~l~~~l~~~~~~-~G~l~~~~~~l~---~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ 441 (462)
T PRK08032 385 GITTQIATNLKSWLST-TGIIKTATDGVN---KTLKKLTKQYNAVSDSIDATIARYKAQFT 441 (462)
T ss_pred cHHHHHHHHHHHHHcC-CccchhHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666653 355443222222 23455566666666555554444444443
No 29
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=47.66 E-value=14 Score=44.69 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.8
Q ss_pred ccccchh
Q 017359 290 IIPHAVS 296 (373)
Q Consensus 290 IiP~AV~ 296 (373)
|||+.+.
T Consensus 131 i~~~~~~ 137 (2849)
T PTZ00415 131 IIKRRRA 137 (2849)
T ss_pred EeehHHh
Confidence 4665554
No 30
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=47.63 E-value=1e+02 Score=30.80 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 017359 45 EKLTPAVRKRVEVLREIQSEHDELEA---KFFEERAALEAKYQKLYQPMY 91 (373)
Q Consensus 45 e~Lp~~v~~rv~aLk~LQ~e~~~le~---kf~~E~~~LE~KY~k~~~Ply 91 (373)
..|..++.+|-..|..++..+..|+. .|..|.-..|...+++|+-++
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655542 344455555555555555544
No 31
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=44.68 E-value=1.2e+02 Score=26.32 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 46 KLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
+|+++.++.. -+.||.....+..........|.......+.||+.+=..+|
T Consensus 72 ~ls~~~~~~~--~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 72 TLSEEERQKR--QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp --SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544222 22444444444444445556677777788888888888777
No 32
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=43.48 E-value=2e+02 Score=24.63 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 017359 62 QSEHDELEAKFFE---ERAALEAKYQKLYQPMYTKRYEIVNGV 101 (373)
Q Consensus 62 Q~e~~~le~kf~~---E~~~LE~KY~k~~~Ply~kR~eII~G~ 101 (373)
..++..|..+|.. +...++.+|...++-...++..|+++.
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~ 129 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGE 129 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455556666643 556788899999999999999999654
No 33
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=43.32 E-value=1.1e+02 Score=23.65 Aligned_cols=30 Identities=40% Similarity=0.547 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 017359 70 AKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 70 ~kf~~E~~~LE~KY~k~~~Ply~kR~eII~ 99 (373)
..|.+++..||..|.+.+.-|..+=.....
T Consensus 29 ~~~~keRa~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 29 ASFFKERASLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 368888888888888888887777666553
No 34
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=43.17 E-value=7.9 Score=43.02 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=6.8
Q ss_pred cchhHHHHHHHHHhh
Q 017359 21 ARADLVGVLKNKLQN 35 (373)
Q Consensus 21 ~~~~~~~~l~~~l~~ 35 (373)
+-|.+|..|+.|...
T Consensus 85 d~~evv~~L~~~~~~ 99 (713)
T PF03344_consen 85 DMPEVVKFLKRRYEK 99 (713)
T ss_dssp T-TTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 344555555554433
No 35
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=43.14 E-value=19 Score=38.29 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=11.0
Q ss_pred cccccchhhhccc
Q 017359 289 KIIPHAVSWFTGE 301 (373)
Q Consensus 289 ~IiP~AV~yftGe 301 (373)
-+.|.++.-|+|-
T Consensus 172 mLlPCg~D~F~Gv 184 (615)
T KOG3540|consen 172 MLLPCGLDMFRGV 184 (615)
T ss_pred ceeccccccccCc
Confidence 3689999999994
No 36
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.76 E-value=1.4e+02 Score=24.21 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 017359 46 KLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN 99 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~ 99 (373)
.|-+.......++..|...+..++.........+...|..+++-|-.++..++.
T Consensus 11 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 64 (127)
T smart00502 11 KLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLE 64 (127)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677788888888888888888888888998888888888888884
No 37
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=40.76 E-value=9.1 Score=42.97 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=3.5
Q ss_pred cccccccc
Q 017359 240 ESFFNFFN 247 (373)
Q Consensus 240 ~SFFnfF~ 247 (373)
..+|.+|.
T Consensus 587 WYLl~st~ 594 (787)
T PF03115_consen 587 WYLLQSTT 594 (787)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 34445443
No 38
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=40.01 E-value=60 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=22.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 017359 42 DVLEKLTPAVRKRVEVLREIQSEHDELE 69 (373)
Q Consensus 42 ~~ie~Lp~~v~~rv~aLk~LQ~e~~~le 69 (373)
+.+++||.++++.+.-++.+-.++..+.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~ 35 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLL 35 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHH
Confidence 4578999999999999988887754443
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.77 E-value=1.6e+02 Score=26.34 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 74 EERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 74 ~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
.++..++..| ..+.-.|.+|+.|.
T Consensus 145 ee~~~~~~~~-~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 145 EEKEKLEKEY-KKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 4666777666 56677888888875
No 40
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.33 E-value=1.3e+02 Score=23.59 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 24 DLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAK 82 (373)
Q Consensus 24 ~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~K 82 (373)
..+++|+++|+.+....+.+-..+-.=.+.|=.++..|+..+..+. ++..++-.|.++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~-~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENN-KLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3678899999988876554433333334455566666776666553 455666666655
No 41
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=38.16 E-value=1.3e+02 Score=24.40 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=28.1
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (373)
Q Consensus 40 ~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf 72 (373)
|-+.++.|-.+|+..|..+.-||.++++|..+-
T Consensus 2 S~EvleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999999999999999999997763
No 42
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=37.44 E-value=1.1e+02 Score=33.82 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 58 LREIQSEHDELEAKFFEERAALEAKYQK 85 (373)
Q Consensus 58 Lk~LQ~e~~~le~kf~~E~~~LE~KY~k 85 (373)
|+.++.++..++.++.....+|.++|.+
T Consensus 609 i~~l~~~i~~~e~rl~~~e~rl~~QFta 636 (661)
T PRK06664 609 IADNNKKIEEYEKKLESKERKLKGKYLT 636 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555555555555543
No 43
>PRK08724 fliD flagellar capping protein; Validated
Probab=35.45 E-value=1.7e+02 Score=32.65 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=32.8
Q ss_pred CchhhhhhhhCcccchhH-----------HHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 8 FNVTDLRASLDEGARADL-----------VGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEER 76 (373)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~ 76 (373)
+|-.-|..||. .||.- ...|...|..+.+ ..|.| ..|...|..-...+..-...+.+.+
T Consensus 571 iD~~KL~~AL~--~npd~V~~LF~g~~GlA~rL~~~L~~~~~-t~G~I-------~~R~~sL~~~i~~l~dqi~~Le~Rl 640 (673)
T PRK08724 571 INYDMLDRQLN--NNFNKLEEFFGGNTGFAKRVEDAIQSMTG-VTGSI-------RTREKSLREQNYRLNDDQVALDRRM 640 (673)
T ss_pred ecHHHHHHHHH--hCHHHHHHHhcCCchHHHHHHHHHHHHhc-cCCch-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666655 34444 4445666666665 33443 3344444333333333333334444
Q ss_pred HHHHHHHHHHHh
Q 017359 77 AALEAKYQKLYQ 88 (373)
Q Consensus 77 ~~LE~KY~k~~~ 88 (373)
..+|.+|.++|.
T Consensus 641 e~~E~Ry~~QFt 652 (673)
T PRK08724 641 ESLEKRTHAKFA 652 (673)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 44
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.97 E-value=22 Score=39.98 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=4.9
Q ss_pred ccccc-cccc
Q 017359 240 ESFFN-FFNP 248 (373)
Q Consensus 240 ~SFFn-fF~~ 248 (373)
+-||. ||+.
T Consensus 803 e~fFhry~~~ 812 (988)
T KOG2038|consen 803 ELFFHRYYSS 812 (988)
T ss_pred HHHHHHHhhh
Confidence 33665 6664
No 45
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=34.44 E-value=20 Score=35.94 Aligned_cols=6 Identities=50% Similarity=0.999 Sum_probs=2.3
Q ss_pred cccccc
Q 017359 241 SFFNFF 246 (373)
Q Consensus 241 SFFnfF 246 (373)
||-++|
T Consensus 26 sli~l~ 31 (324)
T PF05285_consen 26 SLINLF 31 (324)
T ss_pred HHHHHH
Confidence 333333
No 46
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=34.39 E-value=13 Score=41.33 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred ceEEEEEeCC
Q 017359 166 GFKLEFYFDP 175 (373)
Q Consensus 166 gF~L~F~F~~ 175 (373)
.+.-.|+|..
T Consensus 263 ~~~~~i~~~~ 272 (713)
T PF03344_consen 263 VIEQPIHFRG 272 (713)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3344445543
No 47
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.33 E-value=12 Score=26.15 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.1
Q ss_pred ccceeeeecCCCCcc
Q 017359 201 AIGTEIEWYPGKCLT 215 (373)
Q Consensus 201 ~~gt~I~WK~GKnlT 215 (373)
-..||.+|++|.++-
T Consensus 9 ~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 9 GVATPANWKPGDDVI 23 (40)
T ss_dssp SSBBCTTTCTTSGEB
T ss_pred CcccCcCCCCCCCeE
Confidence 358999999998764
No 48
>PRK10780 periplasmic chaperone; Provisional
Probab=34.22 E-value=2.2e+02 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHHHHHHh
Q 017359 81 AKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 81 ~KY~k~~~Ply~kR~eII 98 (373)
.+.+.+.+||+.+-...|
T Consensus 112 ~~~~e~~~~i~~ki~~ai 129 (165)
T PRK10780 112 RRSNEERNKILTRIQTAV 129 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544
No 49
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=34.15 E-value=43 Score=34.18 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017359 56 EVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 56 ~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~k 93 (373)
-.|..||..+-.|.-.+.+++.+|.++|..+.+|||+.
T Consensus 454 ~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIlda 491 (502)
T KOG0574|consen 454 ITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDA 491 (502)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHH
Confidence 35788899999999999999999999999999999974
No 50
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.66 E-value=2.6e+02 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCCcchHHHHhhchhhhhhcch
Q 017359 123 GVPDFWLTAMKNNDVLSEEITE 144 (373)
Q Consensus 123 gIP~FWltaL~N~~~ls~~I~e 144 (373)
|=-.+++.|+.++-.|+++|+.
T Consensus 114 G~~t~Yidvil~SkSfsD~IsR 135 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISR 135 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHH
Confidence 4455689999999888888763
No 51
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=33.65 E-value=31 Score=38.74 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017359 54 RVEVLREIQSEHDELEA 70 (373)
Q Consensus 54 rv~aLk~LQ~e~~~le~ 70 (373)
+...++.||.++...++
T Consensus 567 ~f~~ik~l~k~~~~re~ 583 (960)
T KOG1189|consen 567 AFRQIKELQKRFKSREA 583 (960)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555555444443
No 52
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=32.18 E-value=57 Score=33.23 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017359 60 EIQSEHDELEAKFFEERAALEAK 82 (373)
Q Consensus 60 ~LQ~e~~~le~kf~~E~~~LE~K 82 (373)
.++.++..|+.+|.+....|=.+
T Consensus 59 ef~~ev~~LE~kY~~~~~Ply~k 81 (337)
T PTZ00007 59 EYNAELRKLRSKYEDLYNPIYDK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555544444333
No 53
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=2.7e+02 Score=22.28 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.7
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKF 72 (373)
Q Consensus 40 ~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf 72 (373)
|-+.++.|..+|++.|.-+.-||.++.+|..+-
T Consensus 2 SlEv~ekLE~KiqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778899999999999999999999886554
No 54
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=31.50 E-value=2.5e+02 Score=21.77 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 017359 70 AKFFEERAALEAKYQKLYQPMYTK 93 (373)
Q Consensus 70 ~kf~~E~~~LE~KY~k~~~Ply~k 93 (373)
..|.+++.++|..|.+.++-|-.+
T Consensus 29 ~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 29 KKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999998776
No 55
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.23 E-value=1.4e+02 Score=26.91 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=13.1
Q ss_pred cCCchhhhcCCHHHHHHHHH
Q 017359 38 GQHSDVLEKLTPAVRKRVEV 57 (373)
Q Consensus 38 ~~~s~~ie~Lp~~v~~rv~a 57 (373)
|.-..+...|+++.+..+..
T Consensus 35 G~~~~~~~~LT~EQQa~~q~ 54 (143)
T PRK11546 35 GMWQQNAAPLTTEQQAAWQK 54 (143)
T ss_pred CCCccccccCCHHHHHHHHH
Confidence 33345788999999655433
No 56
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.39 E-value=1.2e+02 Score=32.54 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHhhccccCCcccccchhhhhhhhhccCC
Q 017359 49 PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYT----KRYEIVNGVVEGAPNEVAMDQEEDKATEEKGV 124 (373)
Q Consensus 49 ~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~----kR~eII~G~~e~~~~E~~~~~~~~~~~~~kgI 124 (373)
|..++.|..+...+.++.+-+.++.+-...+..+|.+.++-+=- -|.+|+ ..++.+
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl--------------------~l~~~L 186 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELL--------------------ELVKEL 186 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHH--------------------HHHHhh
Confidence 56788899999999999999999999999999999988876522 234444 224789
Q ss_pred CcchHHHHhhchhhhh
Q 017359 125 PDFWLTAMKNNDVLSE 140 (373)
Q Consensus 125 P~FWltaL~N~~~ls~ 140 (373)
|.++..+......+..
T Consensus 187 P~~~~~i~~~i~~l~~ 202 (507)
T PF05600_consen 187 PSLFDEIVEAISDLQE 202 (507)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888765544443
No 57
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=29 Score=39.81 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=8.2
Q ss_pred cchhHHHHHHHHHhhhh
Q 017359 21 ARADLVGVLKNKLQNLA 37 (373)
Q Consensus 21 ~~~~~~~~l~~~l~~l~ 37 (373)
++-.+..|+......|-
T Consensus 496 d~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 496 DPNNLSEALELTHNCLL 512 (1010)
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 44445555555444444
No 58
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=29.60 E-value=82 Score=26.76 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=25.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
Q 017359 44 LEKLTPAVRKRVEVLREIQSEHDE--L-EAKFFEERAALEAKYQK 85 (373)
Q Consensus 44 ie~Lp~~v~~rv~aLk~LQ~e~~~--l-e~kf~~E~~~LE~KY~k 85 (373)
+..||+.||.+ |+.|..++.. | +.-|.+++.+|=..|..
T Consensus 2 ~s~LP~evq~~---L~~L~~el~~GdiT~KGY~kkr~~LL~~yl~ 43 (111)
T PF06464_consen 2 PSSLPPEVQNR---LQELDLELEEGDITQKGYEKKRSKLLAPYLP 43 (111)
T ss_pred cccCCHHHHHH---HHHHHHhhhcCcchHHHHHHHHHHHHHHHHh
Confidence 45799999977 5555555554 3 45566677777666654
No 59
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=29.16 E-value=41 Score=30.65 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=6.8
Q ss_pred hhcccccccchh
Q 017359 285 TIRDKIIPHAVS 296 (373)
Q Consensus 285 ~ikd~IiP~AV~ 296 (373)
.-+.-.||..+.
T Consensus 103 Lk~~g~~P~~~~ 114 (155)
T PTZ00329 103 LKQHGELPETAK 114 (155)
T ss_pred HHHcCCCCccee
Confidence 444455886653
No 60
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=40 Score=31.58 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhHHH
Q 017359 77 AALEAKYQKLYQPMY 91 (373)
Q Consensus 77 ~~LE~KY~k~~~Ply 91 (373)
.+-.+|| .+|+||-
T Consensus 52 ieWk~KY-~KYKpLt 65 (227)
T KOG3241|consen 52 IEWKRKY-GKYKPLT 65 (227)
T ss_pred HHHHHHh-ccccccc
Confidence 3344455 4455554
No 61
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=26.92 E-value=2.9e+02 Score=28.08 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 46 KLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 46 ~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
+||. +-+|+.+|+.|+.+-. +|..-+..|+..-+.+...|-+-|.-|+
T Consensus 295 tLP~-~V~rl~al~~LHeqa~----~Fa~~lthl~t~q~~i~~sl~~n~ell~ 342 (371)
T KOG3958|consen 295 TLPE-LVQRLVALKQLHEQAM----QFAQLLTHLDTTQQMIANSLKDNTELLT 342 (371)
T ss_pred hhHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4554 4458889988887653 6777777777777776666666555555
No 62
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.13 E-value=39 Score=38.76 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=4.6
Q ss_pred ccccc-cccc
Q 017359 240 ESFFN-FFNP 248 (373)
Q Consensus 240 ~SFFn-fF~~ 248 (373)
.+||. ||+.
T Consensus 817 ~~ff~~wf~~ 826 (1010)
T KOG1991|consen 817 NNFFTLWFQF 826 (1010)
T ss_pred ccHHHHHHHH
Confidence 45554 6653
No 63
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=25.96 E-value=4.7e+02 Score=23.19 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhcCCchhh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 25 LVGVLKNKLQNLAGQHSDVL------EKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 25 ~~~~l~~~l~~l~~~~s~~i------e~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
.+..|+.++..+-|.+++-+ +.||..-. ..-|+.|..+...|+.+...--+.|+++- |-|.-+.+.|+..+
T Consensus 23 qi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l--~~llkqLEkeK~~Le~qlk~~e~rLeQEs-KAyhk~ndeRr~yl 99 (129)
T PF15372_consen 23 QIIILREKIEKIRGNPSDRLSSIRRYEQMSVESL--NQLLKQLEKEKRSLENQLKDYEWRLEQES-KAYHKANDERRQYL 99 (129)
T ss_pred HHHHHHHHHHHHhCCCccccHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34567889999999888876 67765433 45577777777788877777667777664 55666777777776
Q ss_pred h
Q 017359 99 N 99 (373)
Q Consensus 99 ~ 99 (373)
+
T Consensus 100 a 100 (129)
T PF15372_consen 100 A 100 (129)
T ss_pred H
Confidence 4
No 64
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=24.13 E-value=41 Score=33.45 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=9.4
Q ss_pred ccccchhhhcccc
Q 017359 290 IIPHAVSWFTGEA 302 (373)
Q Consensus 290 IiP~AV~yftGea 302 (373)
++|-+|..|.|..
T Consensus 14 ~~p~~l~~~~~~~ 26 (285)
T PF03896_consen 14 VFPATLLSFGGGS 26 (285)
T ss_pred HHHHHHHccCCCC
Confidence 5788888877643
No 65
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.92 E-value=3.7e+02 Score=21.25 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=30.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 017359 42 DVLEKLTPAVRKRVEVLREIQSEHDELEAK---FFEERAALEAKYQKLY 87 (373)
Q Consensus 42 ~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~k---f~~E~~~LE~KY~k~~ 87 (373)
+.++.|-..|.+.|..+..||.++..|..+ ...+...|..+..++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345566677777888888888888888764 3445555555555443
No 66
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.55 E-value=4.2e+02 Score=28.99 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHHhhhhcCCchh---hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017359 20 GARADLVGVLKNKLQNLAGQHSDV---LEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYE 96 (373)
Q Consensus 20 ~~~~~~~~~l~~~l~~l~~~~s~~---ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~e 96 (373)
.-+|.-+..+..||..|-+..-.| ++.|+....+....|..|...-..+ .....++..+..+|.+..+-|-..|..
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~-~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESL-EALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888887777655443333 4444444443334444333333322 245677888888888888888888888
Q ss_pred Hh
Q 017359 97 IV 98 (373)
Q Consensus 97 II 98 (373)
.-
T Consensus 372 ~A 373 (557)
T COG0497 372 AA 373 (557)
T ss_pred HH
Confidence 77
No 67
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.48 E-value=2.6e+02 Score=28.01 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=10.4
Q ss_pred chhhHHhhccccccEEE
Q 017359 143 TERDEGALKFLKDIKWF 159 (373)
Q Consensus 143 ~e~De~iLk~L~DI~v~ 159 (373)
.++|..|=||..||.+.
T Consensus 141 ~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 141 AEKDKGIQKYFVDINIQ 157 (305)
T ss_pred chhhhhHHHHHhhhhhh
Confidence 35566666666666554
No 68
>PRK01546 hypothetical protein; Provisional
Probab=22.88 E-value=1.3e+02 Score=24.42 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017359 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (373)
Q Consensus 47 Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply 91 (373)
++..+..||..|...+.. ..|-..=..|..+|...|.+.++--+
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 45 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQNM 45 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999998886 55656667788889999977665544
No 69
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.85 E-value=4.9e+02 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=29.0
Q ss_pred hCcccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHH-HHHHHHHHHHHHH
Q 017359 17 LDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKR-VEVLREIQSEHDE 67 (373)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~r-v~aLk~LQ~e~~~ 67 (373)
|.....|+. +.|++++.++-..-.. ..|||+|+.. ..+|..|+.+++.
T Consensus 18 m~~~k~pgt-s~iK~qiRd~eRlLkk--~~LP~~Vr~e~er~L~~Lk~ql~~ 66 (199)
T KOG4484|consen 18 MRVEKKPGT-SSIKNQIRDLERLLKK--KDLPPEVREELERKLQDLKKQLDN 66 (199)
T ss_pred cchhcCCch-HHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555654 4577777665542111 5799999843 4567777776653
No 70
>PRK02539 hypothetical protein; Provisional
Probab=22.67 E-value=1.4e+02 Score=24.55 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017359 47 LTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMY 91 (373)
Q Consensus 47 Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply 91 (373)
++.++..||..|...+.. ..|-.+=..|..+|.+.|.+.++--+
T Consensus 1 M~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 1 MDPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CCHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999988886 55655667788889999977665544
No 71
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.49 E-value=5e+02 Score=23.29 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=39.5
Q ss_pred hhhhhCcccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHH-HHHHHHHHHHHHH
Q 017359 13 LRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVL-REIQSEHDELEAK 71 (373)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aL-k~LQ~e~~~le~k 71 (373)
|..-++..+=+.+-+.|-+.++.|-..-...+.+||+..|+.+..| +.|-.-+.+|..-
T Consensus 55 Lk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~A 114 (142)
T TIGR03042 55 LASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEA 114 (142)
T ss_pred HHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666777777666555556779999999888888 5666666666543
No 72
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=21.08 E-value=3.3e+02 Score=25.05 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=44.3
Q ss_pred HHHhhhhc-CCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017359 31 NKLQNLAG-QHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPM 90 (373)
Q Consensus 31 ~~l~~l~~-~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Pl 90 (373)
.+++.|.. ..++++..+|.-- .++..|..+|.+..+.-....+++..|=..|++...-|
T Consensus 104 eki~~L~pvL~se~i~~vp~~~-~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~l 163 (174)
T PF07426_consen 104 EKIKSLEPVLDSESIRNVPELC-DKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLL 163 (174)
T ss_pred HHHHHhhhhcCcHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 2456777776544 78999999999999998999999999999998876544
No 73
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.86 E-value=1.7e+02 Score=27.77 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCCchhhhhhhhCcccchhHHHHH
Q 017359 6 DNFNVTDLRASLDEGARADLVGVL 29 (373)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l 29 (373)
-.||-.-|.+||. .+|.-|..|
T Consensus 134 L~iD~~kl~~Al~--~np~~V~~l 155 (239)
T PF07195_consen 134 LSIDETKLDKALA--ENPDAVQAL 155 (239)
T ss_pred EEEeHHHHHHHHh--hCHHHHHHH
Confidence 3567778888888 788777766
No 74
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=79 Score=29.66 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=10.6
Q ss_pred EEEEeCCCCCcccceeeeEEe
Q 017359 169 LEFYFDPNPYFKNSVLTKTYH 189 (373)
Q Consensus 169 L~F~F~~NpYF~N~vLtKty~ 189 (373)
=.|.|. |.-|.-+..+..|.
T Consensus 18 N~f~fk-ndk~dkt~q~~r~n 37 (227)
T KOG3241|consen 18 NKFAFK-NDKIDKTEQGGRFN 37 (227)
T ss_pred cceeec-ccccccchhhceeh
Confidence 345554 55555555555553
No 75
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=1.2e+02 Score=25.09 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=41.3
Q ss_pred CchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 017359 40 HSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIV 98 (373)
Q Consensus 40 ~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII 98 (373)
..+-+..+|+.-++|+..|+.|-..+..-..=-.+++..+-..|..-| ..-|+++|
T Consensus 16 ~~~rlk~iPAqrKKklivLk~ll~~fe~~r~YsEkeVN~ii~ryh~Dy---aTvRReli 71 (89)
T COG3860 16 KNGRLKDIPAQRKKKLIVLKHLLKNFENERQYSEKEVNLIIKRYHPDY---ATVRRELI 71 (89)
T ss_pred CCCchhccchhhhhhhhhHHHHHhhcccccccCHHHHHHHHHHhCchH---HHHHHHHH
Confidence 345688999999999999999988776554444667777776665433 34588888
No 76
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=2.8e+02 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=23.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017359 44 LEKLTPAVRKRVEVLREIQSEHDELEAK 71 (373)
Q Consensus 44 ie~Lp~~v~~rv~aLk~LQ~e~~~le~k 71 (373)
+..|||.++..+..+..||.++..+-.+
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999998876543
No 77
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=20.06 E-value=73 Score=26.57 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.8
Q ss_pred hccccccc
Q 017359 298 FTGEAIQE 305 (373)
Q Consensus 298 ftGea~~~ 305 (373)
..|.....
T Consensus 53 PIGK~~se 60 (92)
T PF15243_consen 53 PIGKPASE 60 (92)
T ss_pred ccCCCCCc
Confidence 34554443
Done!