BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017360
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 263 WNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWSVSEKYILACDSMTLLVKPY 322
++ R +L+S R QQ L + AHR I+G+ S +I+ C+ L +
Sbjct: 77 YSGRSQDGSHLLKSGRYLQQ-ELPVRIAHR----IKGFR---SLPFIIGCNPTIL----H 124
Query: 323 FHDFFIRYLQPLRHYWPIRDK-DKCKSIKFAVDWGNTHKQKV 363
H+ +IR Q L + PI+D+ D+ + + + HK V
Sbjct: 125 VHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVV 166
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 263 WNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWSVSEKYILACDSMTLLVKPY 322
++ R +L+S R QQ L + AHR I+G+ S +I+ C+ L +
Sbjct: 77 YSGRSQDGSHLLKSGRYLQQ-ELPVRIAHR----IKGFR---SLPFIIGCNPTIL----H 124
Query: 323 FHDFFIRYLQPLRHYWPIRDK-DKCKSIKFAVDWGNTHKQKV 363
H+ +IR Q L + PI+D+ D+ + + + HK V
Sbjct: 125 VHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVV 166
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 263 WNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWSVSEKYILACDSMTLLVKPY 322
++ R +L+S R QQ L + AHR I+G+ S +I+ C+ L +
Sbjct: 47 YSGRSQDGSHLLKSGRYLQQ-ELPVRIAHR----IKGFR---SLPFIIGCNPTIL----H 94
Query: 323 FHDFFIRYLQPLRHYWPIRDK-DKCKSIKFAVDWGNTHKQKV 363
H+ +IR Q L + PI+D+ D+ + + + HK V
Sbjct: 95 VHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVV 136
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 193 TMDIVFPDWSFWG 205
TMD +FP+WSFWG
Sbjct: 298 TMDTLFPEWSFWG 310
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 193 TMDIVFPDWSFWG 205
TMD +FP+WSFWG
Sbjct: 298 TMDTLFPEWSFWG 310
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 265 ARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWSVS 305
A L+ DW++E++ G+ ++ ++ R++I +GYA S +
Sbjct: 481 AALFCLDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAVSSA 521
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,318,273
Number of Sequences: 62578
Number of extensions: 541880
Number of successful extensions: 1079
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 8
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)