Query 017360
Match_columns 373
No_of_seqs 215 out of 776
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2458 Endoplasmic reticulum 100.0 1.2E-89 2.5E-94 678.5 22.1 321 44-370 95-420 (528)
2 PF05686 Glyco_transf_90: Glyc 100.0 4.6E-84 1E-88 650.1 23.5 294 76-370 1-294 (395)
3 smart00672 CAP10 Putative lipo 100.0 4.2E-61 9.2E-66 457.9 16.7 220 152-371 1-226 (256)
4 PF13524 Glyco_trans_1_2: Glyc 97.0 0.0011 2.4E-08 52.6 4.8 66 300-371 9-74 (92)
5 COG4641 Uncharacterized protei 70.2 3.9 8.6E-05 41.3 3.1 63 302-370 276-338 (373)
6 PF07436 Curto_V3: Curtovirus 54.1 5.3 0.00011 31.3 0.5 23 3-25 10-32 (87)
7 PF03016 Exostosin: Exostosin 44.9 51 0.0011 31.3 5.9 103 227-337 174-283 (302)
8 PF00534 Glycos_transf_1: Glyc 23.4 1E+02 0.0023 26.1 3.8 68 300-371 103-170 (172)
9 COG0715 TauA ABC-type nitrate/ 22.6 77 0.0017 30.6 3.0 26 347-372 241-266 (335)
10 KOG2619 Fucosyltransferase [Ca 20.3 3.3E+02 0.0072 27.8 7.0 129 228-363 190-323 (372)
No 1
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=100.00 E-value=1.2e-89 Score=678.51 Aligned_cols=321 Identities=60% Similarity=1.149 Sum_probs=301.0
Q ss_pred ccccC----CCCcccCCCCCCCCCCCCcCCCCCCCCCCCCCCcchhhHhhcccccccCCCCHHHHHHhhcCCeEEEEEEC
Q 017360 44 PLNCV----KNQTQTCPTNYPKTSQTQESISDYSIPPTSTCPDYFRWIHEDLSPWKVTGITRDMLERANQTAHFRLILVN 119 (373)
Q Consensus 44 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~C~~~f~~I~~DL~pw~~~GItr~~le~a~~~~~~r~~I~~ 119 (373)
-+.|. -+.+.+||++...+.. ....++...+..+|||||+||++||.||+++||||+++++|++.+++|++|++
T Consensus 95 ~l~cs~~s~~~~~~~~p~~~~~~s~--~~~~~~~~~~~~tCPDyfrWIheDL~Pw~etgItre~~erak~~a~fr~vI~~ 172 (528)
T KOG2458|consen 95 RLYCSLFSGLKREVLCPSSHVSKSP--YILKNPVYHESCTCPDYFRWIHEDLCPWRETGITREMAERAKRKAHFRLVIKE 172 (528)
T ss_pred hhhhhhhhcccccccccccccccCc--cccCCCCCCCCCCCCcHHHHHHHhcCccccccchHHHhhhhhcccceeeeeec
Confidence 36882 2567889987554422 22344666889999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccccCcchhHHHHHHHHHHHHhcCCCCCCeEEEeecCCCCcccccCCCCCCCCCCCCeEEeccCCCCCceecc
Q 017360 120 NKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVFP 199 (373)
Q Consensus 120 G~lyv~~~~~~~~~R~~~~l~~l~~ll~~~~~~LPDvef~~n~~D~P~v~~~~~~G~~~~~~~Pifs~ck~~~~~DIl~P 199 (373)
|++||+.|++++|+|++||+||++|||++|||+|||+||+|||+|+|.+.+++|+| + .+|+|||+||++.++.||+||
T Consensus 173 g~~yv~~Y~ks~qtrd~ft~wgilqLlr~ypgklPDlElmf~~~D~P~v~~~~~~~-~-~~ppPlF~yCg~~~s~DIVfP 250 (528)
T KOG2458|consen 173 GRLYVENYRKSIQTRDVFTIWGILQLLRTYPGKLPDLELMFNCGDWPLVRKKDFQG-T-PPPPPLFSYCGSSESLDIVFP 250 (528)
T ss_pred CceehhhhhhhhcccchHHHHHHHHHHHhcCCCCCCceeeeecCCccccchhhccC-C-CCCCCeEeecCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988 3 389999999999999999999
Q ss_pred CccccccccccccchHHHHHHHHccCCCCCCCCcCcceeeeecCCCc-cchhhhhhccccCCCCCccccchhhhhhhhhc
Q 017360 200 DWSFWGWAEINIKPWESLLRELKEGNNGRNWIDREPYAYWKGNPFVA-ETRRDLLTCNLSDKHDWNARLYVQDWILESKR 278 (373)
Q Consensus 200 d~~fw~wpe~~i~~~~~~~~~l~~~~~~~pW~~K~~kafWRG~~t~~-~~R~~L~~~~~~~~~~~~a~v~~~~w~~e~~~ 278 (373)
||+||||+|.+|++|+.++.++.|++...+|.+|.++|||||++++. +.|+.|++||.+.-.+|+++++.|+|.+|.+.
T Consensus 251 dwsfwgw~e~nik~w~~~~~~~~egn~~~~W~~r~~yAywrGnp~v~e~~rl~ll~cn~s~~~d~~~~~y~qdw~~E~~~ 330 (528)
T KOG2458|consen 251 DWSFWGWAEVNIKPWEKLLEDIVEGNKRPKWKNKNPYAYWRGNPSVAERLRLDLLSCNNSELVDANATLYFQDWSKESKL 330 (528)
T ss_pred CccccCChhhcccccchHHHHHHhhccCCCcccCCceeEecCCCCccccchhhhhhcCCchhhchhhhhHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999987 89999999988777899999999999999999
Q ss_pred CCCCCCHHhhhcccEEEEeccceeecchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhh
Q 017360 279 GFQQSNLASQCAHRYKIYIEGYAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT 358 (373)
Q Consensus 279 g~~~~~l~~~~~yKYli~vdG~~~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~ 358 (373)
|++.+.+++||+|||.|++||.+||+|+||||+|+||+|++++.|+|||++.|+||+|||||+.+ |+||++||+|+++
T Consensus 331 G~k~s~l~dqc~hrYkIyiEG~awsvs~kYilacDS~tL~v~p~YydfF~r~l~P~~HYwPIk~~--c~slkfaV~Wgn~ 408 (528)
T KOG2458|consen 331 GFKQSNLFDQCKHRYKIYIEGTAWSVSEKYILACDSMTLKVKPEYYDFFYRGLQPWKHYWPIKSN--CRSLKFAVDWGNN 408 (528)
T ss_pred cccccchhhhcceeeEEEEeeeeeeeecceeeecceeEEeecchHHHHHhhcccchhcccccccc--hhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred cHHHHHHHHHhh
Q 017360 359 HKQKVISFVDYI 370 (373)
Q Consensus 359 h~~~A~~IA~~~ 370 (373)
|+++||.||+++
T Consensus 409 h~~~Aq~Igk~g 420 (528)
T KOG2458|consen 409 HDEEAQKIGKEG 420 (528)
T ss_pred ChHHHHHHHHHH
Confidence 999999999986
No 2
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=100.00 E-value=4.6e-84 Score=650.08 Aligned_cols=294 Identities=49% Similarity=1.007 Sum_probs=280.6
Q ss_pred CCCCCCcchhhHhhcccccccCCCCHHHHHHhhcCCeEEEEEECCEEEEeeccccCcchhHHHHHHHHHHHHhcCCCCCC
Q 017360 76 PTSTCPDYFRWIHEDLSPWKVTGITRDMLERANQTAHFRLILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPD 155 (373)
Q Consensus 76 ~~~~C~~~f~~I~~DL~pw~~~GItr~~le~a~~~~~~r~~I~~G~lyv~~~~~~~~~R~~~~l~~l~~ll~~~~~~LPD 155 (373)
++.+||+||++|++||+||+++|||+++++++++.+++|++|+||+|||+.+++++++|++|++|+|++|++++|++|||
T Consensus 1 ~~~~cp~~f~~I~~dl~~w~~~gIt~~~l~~~~~~~~~r~~I~~g~lYv~~~~~~~~tR~~~t~~~l~~ll~~~p~~lPD 80 (395)
T PF05686_consen 1 SNSQCPDYFRQIHRDLAPWRETGITREMLDRARRRAMFRYVIKDGRLYVESYREMFQTRDMFTLWGLLQLLRRYPGRLPD 80 (395)
T ss_pred CCCCCCccHHHHHHHHHHhhcCCCCHHHHHHHHhcCceEEEEECCEEEEEecccccchhHHHHHHHHHHHHHhCcCCCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCcccccCCCCCCCCCCCCeEEeccCCCCCceeccCccccccccccccchHHHHHHHHccCCCCCCCCcCc
Q 017360 156 LELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVFPDWSFWGWAEINIKPWESLLRELKEGNNGRNWIDREP 235 (373)
Q Consensus 156 vef~~n~~D~P~v~~~~~~G~~~~~~~Pifs~ck~~~~~DIl~Pd~~fw~wpe~~i~~~~~~~~~l~~~~~~~pW~~K~~ 235 (373)
|||+||++|+|.+.+.++.|... +++||||||++.++.|||||||+|||||+++|++|+..+..+.+++..+||++|++
T Consensus 81 ~Ef~~n~~D~P~~~~~~~~~~~~-~~~Pifs~~~~~~~~DIl~Pd~~fwgw~e~~i~~w~~~~~~i~~~~~~~pW~~K~p 159 (395)
T PF05686_consen 81 VEFMFNCDDWPVVRKDDYQGPSA-PPPPIFSYCKSSDTADILFPDFSFWGWPEINIGPWDEDRKDIKEGNERVPWEDKKP 159 (395)
T ss_pred eeEEeECCCCccccccccCCCCc-chhhheeeccccCcCccccCCccccccccccCCchHHHhhhhhccccCCChhhccc
Confidence 99999999999999887665443 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCccchhhhhhccccCCCCCccccchhhhhhhhhcCCCCCCHHhhhcccEEEEeccceeecchHHHHcCCCe
Q 017360 236 YAYWKGNPFVAETRRDLLTCNLSDKHDWNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWSVSEKYILACDSM 315 (373)
Q Consensus 236 kafWRG~~t~~~~R~~L~~~~~~~~~~~~a~v~~~~w~~e~~~g~~~~~l~~~~~yKYli~vdG~~~S~Rlk~LL~~~Sv 315 (373)
+|||||+++++..|++|++|++.++.+|+|+++.++|..+...+++.+++++||+|||+||+||++||+||||||+||||
T Consensus 160 ~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~S~RlkylL~c~Sv 239 (395)
T PF05686_consen 160 KAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAWSGRLKYLLACNSV 239 (395)
T ss_pred ceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCceeehhHHHHHcCCce
Confidence 99999999988889999999988899999999999998777777789999999999999999999999999999999999
Q ss_pred eeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhh
Q 017360 316 TLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 316 Vlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~ 370 (373)
||++++.|+|||+++|+||+|||||+.+.+|+||+++|+|+++||++||+||+++
T Consensus 240 Vl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g 294 (395)
T PF05686_consen 240 VLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENG 294 (395)
T ss_pred EEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHH
Confidence 9999999999999999999999999995557999999999999999999999986
No 3
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=100.00 E-value=4.2e-61 Score=457.88 Aligned_cols=220 Identities=53% Similarity=1.022 Sum_probs=199.3
Q ss_pred CCCCeEEEeecCCCCcccccCCCCCCCCCCCCeEEeccCCCCCceeccCcccc-ccccccccchHHHHHHHHccCCCCCC
Q 017360 152 RLPDLELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVFPDWSFW-GWAEINIKPWESLLRELKEGNNGRNW 230 (373)
Q Consensus 152 ~LPDvef~~n~~D~P~v~~~~~~G~~~~~~~Pifs~ck~~~~~DIl~Pd~~fw-~wpe~~i~~~~~~~~~l~~~~~~~pW 230 (373)
+|||+||+||++|+|.+.+.++.+.....++||||+||..++.|||||||+|| |||+.++++|+..+.++.+.+.++||
T Consensus 1 ~lPD~ef~~n~~D~p~~~~~~~~~~~~~~~~Pifs~~k~~~~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~pW 80 (256)
T smart00672 1 RVPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNGRPWDKDLMELEEGNKRTKW 80 (256)
T ss_pred CCCCeeeeeeCCCccccccCCCCCcccCCCCCeEEecCCCCCCceEecCHHHhCCCccccCcchHHHHHHHHhhhcCCCc
Confidence 58999999999999999876544333346899999999999999999999999 99999999999999999988899999
Q ss_pred CCcCcceeeeecCCCccchhhhhhccccCCCCCccccchhhhh-----hhhhcCCCCCCHHhhhcccEEEEeccceeecc
Q 017360 231 IDREPYAYWKGNPFVAETRRDLLTCNLSDKHDWNARLYVQDWI-----LESKRGFQQSNLASQCAHRYKIYIEGYAWSVS 305 (373)
Q Consensus 231 ~~K~~kafWRG~~t~~~~R~~L~~~~~~~~~~~~a~v~~~~w~-----~e~~~g~~~~~l~~~~~yKYli~vdG~~~S~R 305 (373)
++|+++|||||+++++.+|++|+++++.++++|||+++.++|. .+...+++.+++++||+|||+|++||++||+|
T Consensus 81 ~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~~S~r 160 (256)
T smart00672 81 SDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVAWSVR 160 (256)
T ss_pred cccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCccchhh
Confidence 9999999999999987799999999988888999999987774 23344566799999999999999999999999
Q ss_pred hHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhhC
Q 017360 306 EKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYII 371 (373)
Q Consensus 306 lk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~~ 371 (373)
|+++|+||||||++++.|+|||++.|+||+|||||+.|+.++||+++|+|+++||++||+||+++.
T Consensus 161 l~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~ 226 (256)
T smart00672 161 LKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGS 226 (256)
T ss_pred HHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998323399999999999999999999863
No 4
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.00 E-value=0.0011 Score=52.64 Aligned_cols=66 Identities=5% Similarity=-0.031 Sum_probs=55.9
Q ss_pred ceeecchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhhC
Q 017360 300 YAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYII 371 (373)
Q Consensus 300 ~~~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~~ 371 (373)
.+.+.|+--.|+||++||.... .-+...+.+..|++-+. +. +|+.++++++.+||++.++||+++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~---~~~~~~~~~~~~~~~~~-~~--~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS---PGLREIFEDGEHIITYN-DP--EELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh---HHHHHHcCCCCeEEEEC-CH--HHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4577789999999999999976 33444578888999998 54 8999999999999999999999863
No 5
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.24 E-value=3.9 Score=41.33 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=50.5
Q ss_pred eecchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhh
Q 017360 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~ 370 (373)
.+-|.--+++|+-..+. .|.+-....++|+.-.+= -.|. .|+.++++++.+||+++++||+++
T Consensus 276 ~~~RvFeiagc~~~liT---~~~~~~e~~f~pgk~~iv-~~d~--kdl~~~~~yll~h~~erkeiae~~ 338 (373)
T COG4641 276 PTNRVFEIAGCGGFLIT---DYWKDLEKFFKPGKDIIV-YQDS--KDLKEKLKYLLNHPDERKEIAECA 338 (373)
T ss_pred chhhHHHHhhcCCcccc---ccHHHHHHhcCCchheEE-ecCH--HHHHHHHHHHhcCcchHHHHHHhh
Confidence 47788899999984443 377777777788877764 4454 899999999999999999999875
No 6
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=54.12 E-value=5.3 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.7
Q ss_pred ccceehhhhcccceeeeeeeCCc
Q 017360 3 ELFAFSIILQSNFSVHNISRNKT 25 (373)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (373)
-||.|||+|||+-.+-+.|-.++
T Consensus 10 LlFifsillQsgtNfYGTfqSgs 32 (87)
T PF07436_consen 10 LLFIFSILLQSGTNFYGTFQSGS 32 (87)
T ss_pred HHHHHHHHHhcCCceeeeeccch
Confidence 37899999999988888887775
No 7
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=44.90 E-value=51 Score=31.29 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=64.0
Q ss_pred CCCCCCcCcceeeeecCCCc------cchhhhhhccccCCCCCccccchhhhhhhhhcCCCCCCHHhhhcccEEEEeccc
Q 017360 227 GRNWIDREPYAYWKGNPFVA------ETRRDLLTCNLSDKHDWNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGY 300 (373)
Q Consensus 227 ~~pW~~K~~kafWRG~~t~~------~~R~~L~~~~~~~~~~~~a~v~~~~w~~e~~~g~~~~~l~~~~~yKYli~vdG~ 300 (373)
..+..+|.-.++|+|..... ..|..|+..-...+ .+.. ... .+.. .....-++...+-||-+...|.
T Consensus 174 ~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~-~~~~--~~~---~~~~-~~~~~~~~~l~~S~FCL~p~G~ 246 (302)
T PF03016_consen 174 QRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDP-DFRC--SDG---SETC-PSPSEYMELLRNSKFCLCPRGD 246 (302)
T ss_pred cCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCC-ccee--eec---cccc-ccchHHHHhcccCeEEEECCCC
Confidence 45677888999999997643 46777776421111 1111 000 0000 0011235667889999999999
Q ss_pred e-eecchHHHHcCCCeeeeccccchhhcccccCCCcee
Q 017360 301 A-WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHY 337 (373)
Q Consensus 301 ~-~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HY 337 (373)
+ +|.||.--|.+|++.+.....+..=|.+.| +|.-+
T Consensus 247 ~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l-dw~~f 283 (302)
T PF03016_consen 247 GPWSRRLYEALAAGCIPVIISDDYVLPFEDVL-DWSRF 283 (302)
T ss_pred CcccchHHHHhhhceeeEEecCcccCCccccc-CHHHE
Confidence 7 899999999999998887654554444444 44444
No 8
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=23.42 E-value=1e+02 Score=26.12 Aligned_cols=68 Identities=6% Similarity=-0.108 Sum_probs=44.9
Q ss_pred ceeecchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhhC
Q 017360 300 YAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYII 371 (373)
Q Consensus 300 ~~~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~~ 371 (373)
-+++..+---|+||.+||..... .+.+.+.+..+-+-+... ...+|.++|.-+.++++..+.+++++.
T Consensus 103 e~~~~~~~Ea~~~g~pvI~~~~~---~~~e~~~~~~~g~~~~~~-~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 103 EGFGLSLLEAMACGCPVIASDIG---GNNEIINDGVNGFLFDPN-DIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp BSS-HHHHHHHHTT-EEEEESST---HHHHHSGTTTSEEEESTT-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeecccc---CCceeeccccceEEeCCC-CHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 35556677789999999987643 333444444432222222 138999999999999999999998863
No 9
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=22.65 E-value=77 Score=30.59 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.8
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHhhCC
Q 017360 347 KSIKFAVDWGNTHKQKVISFVDYIIP 372 (373)
Q Consensus 347 sDL~~~v~w~~~h~~~A~~IA~~~~~ 372 (373)
.-+.++.+|+++||++|.+|.....+
T Consensus 241 ~a~~~a~~~~~~~p~~a~~~~~~~~~ 266 (335)
T COG0715 241 KALAKATAWANAHPDEAAEILAKAAG 266 (335)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHhc
Confidence 45678889999999999999887654
No 10
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=20.27 E-value=3.3e+02 Score=27.80 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=73.1
Q ss_pred CCCCCcCcceeeeecCCCc-cchhhhhhccccCCCCCccccchhhhhhhhhcCCCCCCHHhhhcccEEEEeccceee---
Q 017360 228 RNWIDREPYAYWKGNPFVA-ETRRDLLTCNLSDKHDWNARLYVQDWILESKRGFQQSNLASQCAHRYKIYIEGYAWS--- 303 (373)
Q Consensus 228 ~pW~~K~~kafWRG~~t~~-~~R~~L~~~~~~~~~~~~a~v~~~~w~~e~~~g~~~~~l~~~~~yKYli~vdG~~~S--- 303 (373)
-.|..|...+.|..+.-.. ..|.++++-=..+ ..+.++..-..+..+.+...=-++-..+|||.|-+|-...-
T Consensus 190 ~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~---l~iD~YG~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS~c~DYV 266 (372)
T KOG2619|consen 190 SILSAKTKLAAWLVSNCIPRSARLDYYKELMKH---LEIDSYGECLRKNANRDPSDCLLETLSHYKFYLAFENSNCEDYV 266 (372)
T ss_pred cccccccceeeeeccccCcchHHHHHHHHHHhh---CceeeccccccccccCCCCCcceeecccceEEEEecccCCcccc
Confidence 4578899999999997643 4677776531111 33333332221100111111123334599999999986432
Q ss_pred -cchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHH
Q 017360 304 -VSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKV 363 (373)
Q Consensus 304 -~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A 363 (373)
=.|-..|-.+||.+-.....+ ....|-.-||-|+.=...+||..-|+.+.+|+++-
T Consensus 267 TEKfw~al~~gsVPVvlg~~n~----e~fvP~~SfI~vdDF~s~~ela~ylk~L~~n~~~Y 323 (372)
T KOG2619|consen 267 TEKFWNALDAGSVPVVLGPPNY----ENFVPPDSFIHVDDFQSPQELAAYLKKLDKNPAAY 323 (372)
T ss_pred cHHHHhhhhcCcccEEECCccc----cccCCCcceEehhhcCCHHHHHHHHHHhhcCHHHH
Confidence 245577888998887777433 44567777877764211244444455555666543
Done!