Query 017360
Match_columns 373
No_of_seqs 215 out of 776
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qhp_A Type 1 capsular polysac 27.7 1.2E+02 0.0042 24.0 6.2 61 303-370 88-151 (166)
2 4esw_A Pyrimidine biosynthesis 24.8 42 0.0014 31.2 3.0 26 347-372 225-250 (342)
3 1hnr_A H-NS; histone-like prot 20.0 24 0.00081 24.1 0.2 17 289-306 5-23 (47)
4 2bfw_A GLGA glycogen synthase; 18.2 1.8E+02 0.0062 23.7 5.5 62 303-370 129-192 (200)
5 3hn0_A Nitrate transport prote 13.9 1.1E+02 0.0038 27.6 3.2 21 350-370 204-224 (283)
6 3fpn_A Geobacillus stearotherm 13.7 1.4E+02 0.0048 24.1 3.4 29 97-126 33-61 (119)
7 2nvm_A FDXN element excision c 11.6 1.5E+02 0.0052 24.4 2.9 41 111-162 72-112 (126)
8 4dfc_B Uvrabc system protein A 10.4 1.5E+02 0.005 24.2 2.5 29 97-126 35-63 (126)
9 2nxo_A Hypothetical protein SC 10.3 1.8E+02 0.006 26.2 3.3 24 347-370 209-232 (291)
10 2jjm_A Glycosyl transferase, g 10.3 3.9E+02 0.013 24.4 5.9 66 301-370 296-361 (394)
No 1
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=27.70 E-value=1.2e+02 Score=24.04 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=40.5
Q ss_pred ecchHHHHcCCC-eeee-ccc-cchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhh
Q 017360 303 SVSEKYILACDS-MTLL-VKP-YFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 303 S~Rlk~LL~~~S-vVlk-~~~-~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~ 370 (373)
+..+---|+||- .|+. ... ...+. +.....+++.. | .++|.++|..+.++++..+++++++
T Consensus 88 ~~~~~Eama~G~vPvi~~~~~~~~~~~----~~~~~~~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~ 151 (166)
T 3qhp_A 88 AIACLEAISVGIVPVIANSPLSATRQF----ALDERSLFEPN-N--AKDLSAKIDWWLENKLERERMQNEY 151 (166)
T ss_dssp CHHHHHHHHTTCCEEEECCTTCGGGGG----CSSGGGEECTT-C--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcEEeeCCCCchhhh----ccCCceEEcCC-C--HHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 344556689998 7777 322 23333 23344455543 3 2899999999999999888888765
No 2
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=24.79 E-value=42 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.2
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHhhCC
Q 017360 347 KSIKFAVDWGNTHKQKVISFVDYIIP 372 (373)
Q Consensus 347 sDL~~~v~w~~~h~~~A~~IA~~~~~ 372 (373)
.-+.++++|+++||++|.+|.....|
T Consensus 225 ~A~~ka~~~~~~nP~eA~~i~~~~~p 250 (342)
T 4esw_A 225 KAIKRATDYMLAHPREAWAEYGNFKP 250 (342)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHhCc
Confidence 44678889999999999988776654
No 3
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=20.04 E-value=24 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.6
Q ss_pred hcccEEEEeccc--eeecch
Q 017360 289 CAHRYKIYIEGY--AWSVSE 306 (373)
Q Consensus 289 ~~yKYli~vdG~--~~S~Rl 306 (373)
.+||| ++-+|. +||||-
T Consensus 5 ~KYry-~dp~G~~~TWtGrG 23 (47)
T 1hnr_A 5 AKYSY-VDENGETKTWTGQG 23 (47)
T ss_dssp CCBEE-CCSSCCCEECCTTS
T ss_pred Cceee-cCCCCCcccccCCC
Confidence 46777 456698 999985
No 4
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=18.19 E-value=1.8e+02 Score=23.70 Aligned_cols=62 Identities=6% Similarity=0.015 Sum_probs=40.7
Q ss_pred ecchHHHHcCCCeeeecccc-chhhcccccCCCceeeeCCCCCCcccHHHHHHHhhh-cHHHHHHHHHhh
Q 017360 303 SVSEKYILACDSMTLLVKPY-FHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKVISFVDYI 370 (373)
Q Consensus 303 S~Rlk~LL~~~SvVlk~~~~-~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~A~~IA~~~ 370 (373)
+..+---|+||-.|+..... ..|+. ...+-+-+..+. .++|.++|..+.+ ++++.+++++++
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~~~~e~~-----~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a 192 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVGGLRDII-----TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENC 192 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCHHHHHHC-----CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCEEEeCCCChHHHc-----CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455678899998888654 23332 222222233221 3789999999999 999999988875
No 5
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=13.91 E-value=1.1e+02 Score=27.58 Aligned_cols=21 Identities=5% Similarity=-0.037 Sum_probs=17.9
Q ss_pred HHHHHHhhhcHHHHHHHHHhh
Q 017360 350 KFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 350 ~~~v~w~~~h~~~A~~IA~~~ 370 (373)
.++++|+++||++|.+|+...
T Consensus 204 ~~a~~~~~~np~ea~~~~~~~ 224 (283)
T 3hn0_A 204 RASCQKAVRYPKETIHSLEEH 224 (283)
T ss_dssp HHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHCHHHHHHHHHHh
Confidence 678999999999998887654
No 6
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=13.66 E-value=1.4e+02 Score=24.09 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCCCHHHHHHhhcCCeEEEEEECCEEEEee
Q 017360 97 TGITRDMLERANQTAHFRLILVNNKVYIHK 126 (373)
Q Consensus 97 ~GItr~~le~a~~~~~~r~~I~~G~lyv~~ 126 (373)
.|--++.++.+++.|..|+.| ||++|-..
T Consensus 33 Kg~~~~ll~~l~~~Gf~Rvrv-DGe~~~l~ 61 (119)
T 3fpn_A 33 KGTHAKTLEDIRKQGYVRVRI-DREMRELT 61 (119)
T ss_dssp CSCCHHHHHHHHHTTCCEEEE-TTEEEETT
T ss_pred CCcHHHHHHHHHhCCCeEEEE-CCEEEecC
Confidence 566688999999999988866 88988554
No 7
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=11.64 E-value=1.5e+02 Score=24.36 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=25.7
Q ss_pred CeEEEEEECCEEEEeeccccCcchhHHHHHHHHHHHHhcCCCCCCeEEEeec
Q 017360 111 AHFRLILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFDC 162 (373)
Q Consensus 111 ~~~r~~I~~G~lyv~~~~~~~~~R~~~~l~~l~~ll~~~~~~LPDvef~~n~ 162 (373)
..+++.|+||+++++.- + + -.+|.+-|.. ..+|--++++-.
T Consensus 72 ~iiHldIkdgKIWIq~D--~--T-----E~gIa~eLv~--~GIPk~DIVLgF 112 (126)
T 2nvm_A 72 IILYLQIQNGKIWIEED--S--T-----NLAIVDEMLV--AGIPQTDIILGF 112 (126)
T ss_dssp EEEEEEEETTEEEEEEC--S--S-----TTHHHHHHHH--TTCCGGGEEETT
T ss_pred EEEEEEEeCCeEEEEeC--C--c-----hhhHHHHHHH--cCCCHHHEEEcc
Confidence 46789999999999972 2 2 1245444444 266755555544
No 8
>4dfc_B Uvrabc system protein A; alpha/beta domains, DNA repair, ATP binding, DNA binding, NU excision repair, hydrolase-DNA binding protein complex; 2.80A {Escherichia coli}
Probab=10.40 E-value=1.5e+02 Score=24.20 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCCCHHHHHHhhcCCeEEEEEECCEEEEee
Q 017360 97 TGITRDMLERANQTAHFRLILVNNKVYIHK 126 (373)
Q Consensus 97 ~GItr~~le~a~~~~~~r~~I~~G~lyv~~ 126 (373)
.|--++.++.++..|..|+.| ||++|-..
T Consensus 35 Kg~~~~ll~~l~~~Gf~Rvrv-DGe~~~l~ 63 (126)
T 4dfc_B 35 KGEHTKTLENLASQGYIRARI-DGEVCDLS 63 (126)
T ss_dssp ESCCHHHHHHHHHHTCCEEEE-TTEEEETT
T ss_pred CCcHHHHHHHHHhCCCeEEEE-CCEEEecC
Confidence 466688899999999988866 88988554
No 9
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=10.32 E-value=1.8e+02 Score=26.18 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=18.8
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHhh
Q 017360 347 KSIKFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 347 sDL~~~v~w~~~h~~~A~~IA~~~ 370 (373)
..+.++++|.++||++|.++....
T Consensus 209 ~a~~~a~~~~~~~p~ea~~~~a~~ 232 (291)
T 2nxo_A 209 EAFLASRNLSLEEVEKVAEQAARW 232 (291)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH
Confidence 346788899999999988776543
No 10
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=10.26 E-value=3.9e+02 Score=24.35 Aligned_cols=66 Identities=6% Similarity=-0.119 Sum_probs=42.1
Q ss_pred eeecchHHHHcCCCeeeeccccchhhcccccCCCceeeeCCCCCCcccHHHHHHHhhhcHHHHHHHHHhh
Q 017360 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKVISFVDYI 370 (373)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~~~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~A~~IA~~~ 370 (373)
+++..+---|+||-.|+..... -..+.+.....=+-+..+. .++|.++|..+.++++..+++++++
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~ 361 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERA 361 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3455566778999998887653 1222333333222233221 3789999999999998888887765
Done!