BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017363
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 159/348 (45%), Gaps = 33/348 (9%)
Query: 15 MVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVG 74
M GG G SYA NS Q M + ++ E++ + + L S + F D GCS G
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETL-ENVHLNS---SASPPPFTAVDLGCSSG 64
Query: 75 PNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---- 130
NT + I++ + ++ A D EF FF+D NDFNTLFQ +PP
Sbjct: 65 ANTVHIIDFIVKHISKRFDAAGID-------PPEFTAFFSDLPSNDFNTLFQLLPPLVSN 117
Query: 131 -----------SRKYFAFGVPGSFHGRLFPKXXXXXXXXXXXXXXXXXXXXEILDSRSPA 179
+R YF GVPGSF+ RLFP + D RS A
Sbjct: 118 TCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAA 177
Query: 180 WNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDS 239
+N+G + G + + AY QF+ D FL ARA E+ GG + V + P
Sbjct: 178 YNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQG 237
Query: 240 NGGKLYG-FLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDK 298
G L+G D+ +GL+ EK D FNIP+Y P+ ++ K +++ NG F I+++
Sbjct: 238 GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVV 297
Query: 299 LP-DPPLMRLKPSPES-----VTSQIRAVFEGVVKEHFGYDLVDKIFN 340
PL+ +P S S R+V +V+ H G +L +K+F+
Sbjct: 298 YKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFS 345
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 168/353 (47%), Gaps = 54/353 (15%)
Query: 15 MVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGT-FKLADFGCSV 73
M GG G+ SYA NS QR +I K + +I +L DT T +AD GCS
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAI------TALYSGDTVTTRLAIADLGCSS 62
Query: 74 GPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRK 133
GPN AV +I+ V+ + ++N + E+Q+F ND GNDFN +F+++P
Sbjct: 63 GPNALFAVTELIKTVEELRKKMGREN------SPEYQIFLNDLPGNDFNAIFRSLPIEND 116
Query: 134 Y----FAFGVPGSFHGRLFPKXXXXXXXXXXXXXXXXXXXXEILDSRSPAW--------- 180
F GVPGSF+GRLFP+ I S S W
Sbjct: 117 VDGVCFINGVPGSFYGRLFPRNTLHF----------------IHSSYSLMWLSQVPIGIE 160
Query: 181 -NKGSIICSGLV-KGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMID 238
NKG+I + + V AY QF+ D FL RA E+VPGG +V +
Sbjct: 161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG-RRSEDRAS 219
Query: 239 SNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD- 297
+ ++ L L M ++GLI+EEK+D FNIP Y P+ E++A I + G F I+ ++
Sbjct: 220 TECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEA 279
Query: 298 -KLPDPPLMR-------LKPSPESVTSQIRAVFEGVVKEHFGYDLVDKIFNFF 342
++ + ++ +V +RAV E ++ +HFG +++ +F+ +
Sbjct: 280 SEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRY 332
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 173/358 (48%), Gaps = 31/358 (8%)
Query: 15 MVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVG 74
M GG+GD SYAKNS++ ++++ K ++ + + + L +L + C K+AD GC+ G
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLR-ANLPNINKC--IKVADLGCASG 65
Query: 75 PNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---- 130
PNT + V++I++++ + +N Q+F ND + NDFN++F+ +P
Sbjct: 66 PNTLLTVRDIVQSIDKVGQ-----EKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 131 -----SRKY---FAFGVPGSFHGRLFPKXXXXXXXXXXXXXXXXXXXXEILDSRSPAWNK 182
RK +PGSF+ RLFP+ ++ NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180
Query: 183 GSIICSGLVK-GVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNG 241
GSI S + V +AY QF D FL + EL G ++ L + GV + N
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRML--LTCICKGVELDARNA 238
Query: 242 GKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRI---ERMDK 298
L L + D+ +G ++EEK+DSFN+P+Y P+AEE+K I+E G F I E
Sbjct: 239 IDL---LEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKV 295
Query: 299 LPDP--PLMRLKPSPESVTSQIRAVFEGVVKEHFGYDLVDKIFNFFTAKFAENFIFGE 354
L D + E V S +RAV+E ++ HFG ++ IF+ F A+ G+
Sbjct: 296 LYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPLGK 353
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 162/354 (45%), Gaps = 57/354 (16%)
Query: 15 MVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVG 74
M GG+GD SYAKNSS+ +I + E +L +L + C FK+ D GC+ G
Sbjct: 9 MNGGEGDTSYAKNSSYNLFLIRVKP--VLEQCIQELLRANLPNINKC--FKVGDLGCASG 64
Query: 75 PNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---- 130
PNTF V++I++++ + +N Q+F ND + NDFN++F+ +P
Sbjct: 65 PNTFSTVRDIVQSIDKVGQ-----EKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 131 -----SRKYFAF---GVPGSFHGRLFPKXXXXXXXXXXXXXXXXXXXXEILDSRSPAWNK 182
RK + +PGSF+ RLFP+ ++ + NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179
Query: 183 GSIICSGLVKG-VSEAYSAQFKNDTEAFLNARAHELVPGG--LIVFVL----FSLPNGVP 235
G I S + + +AY QF D FL + EL+ G L+ F+ F PN +
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMD 239
Query: 236 MIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIER 295
+++ + + D+ +G ++EEK+DSFN+P+Y P+ EE+K I+E G F I
Sbjct: 240 LLEMS-----------INDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288
Query: 296 MDKLPDP---------PLMRLKPSPES---------VTSQIRAVFEGVVKEHFG 331
++ P SP S V S +R+++E ++ HFG
Sbjct: 289 LETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFG 342
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 11 GSFPMVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKL 50
G +V GDG YA+ + + + + AA ++ +++ D+L
Sbjct: 133 GRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQL 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,988,915
Number of Sequences: 62578
Number of extensions: 447126
Number of successful extensions: 868
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 6
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)