Query 017363
Match_columns 373
No_of_seqs 138 out of 555
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.8E-97 4E-102 737.5 37.4 347 9-369 15-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 9.1E-92 2E-96 691.5 26.5 317 42-371 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.5 6.9E-13 1.5E-17 125.8 20.6 249 22-371 7-257 (258)
4 PRK14103 trans-aconitate 2-met 99.5 9.7E-13 2.1E-17 125.0 19.8 225 22-349 5-231 (255)
5 TIGR02072 BioC biotin biosynth 99.4 1.4E-11 3.1E-16 113.9 15.6 216 22-347 7-223 (240)
6 PRK10258 biotin biosynthesis p 99.4 3.7E-11 8.1E-16 113.6 18.4 207 23-342 19-230 (251)
7 COG4106 Tam Trans-aconitate me 99.1 3.2E-09 7E-14 98.0 15.3 222 61-371 29-256 (257)
8 TIGR02752 MenG_heptapren 2-hep 98.9 3.6E-09 7.8E-14 98.5 8.8 170 63-299 46-219 (231)
9 PLN02244 tocopherol O-methyltr 98.9 7.7E-08 1.7E-12 95.6 18.5 156 62-297 118-277 (340)
10 PLN02233 ubiquinone biosynthes 98.9 3.1E-08 6.6E-13 94.9 14.8 164 62-297 73-247 (261)
11 PLN02336 phosphoethanolamine N 98.9 1.8E-07 3.9E-12 96.6 20.7 185 63-349 267-460 (475)
12 PRK15068 tRNA mo(5)U34 methylt 98.9 1.2E-08 2.5E-13 100.8 10.5 149 63-300 123-276 (322)
13 PTZ00098 phosphoethanolamine N 98.9 2E-07 4.4E-12 89.3 18.7 190 62-347 52-246 (263)
14 TIGR00740 methyltransferase, p 98.9 2.8E-08 6E-13 93.5 12.4 159 63-292 54-221 (239)
15 PRK08317 hypothetical protein; 98.8 6.8E-07 1.5E-11 82.3 21.0 218 62-371 19-240 (241)
16 PF13489 Methyltransf_23: Meth 98.8 3.4E-09 7.4E-14 92.0 5.3 138 61-295 21-160 (161)
17 TIGR00452 methyltransferase, p 98.7 4.2E-07 9.1E-12 89.5 16.7 93 146-299 182-274 (314)
18 COG2226 UbiE Methylase involve 98.7 5.9E-08 1.3E-12 91.8 9.1 168 62-295 51-221 (238)
19 PRK11036 putative S-adenosyl-L 98.7 2.5E-07 5.3E-12 88.0 13.1 158 62-297 44-206 (255)
20 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.5E-07 5.5E-12 87.7 11.8 160 62-292 56-224 (247)
21 PRK11207 tellurite resistance 98.6 6.8E-07 1.5E-11 82.0 12.9 135 63-297 31-169 (197)
22 PF08241 Methyltransf_11: Meth 98.6 5.1E-08 1.1E-12 76.8 4.5 95 67-225 1-95 (95)
23 PF01209 Ubie_methyltran: ubiE 98.6 3E-08 6.6E-13 93.6 3.0 165 62-296 47-218 (233)
24 smart00828 PKS_MT Methyltransf 98.6 1E-06 2.2E-11 81.7 13.0 81 150-299 65-145 (224)
25 PRK00216 ubiE ubiquinone/menaq 98.6 5.4E-07 1.2E-11 83.4 11.1 167 63-299 52-226 (239)
26 PRK11705 cyclopropane fatty ac 98.5 6.3E-06 1.4E-10 83.4 19.1 145 63-299 168-313 (383)
27 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.9E-06 4.2E-11 78.8 14.2 164 62-299 39-211 (223)
28 PLN02490 MPBQ/MSBQ methyltrans 98.5 9.6E-07 2.1E-11 87.8 12.2 144 63-300 114-258 (340)
29 PLN02396 hexaprenyldihydroxybe 98.5 1.8E-07 3.9E-12 92.4 6.8 152 63-297 132-288 (322)
30 PF12847 Methyltransf_18: Meth 98.5 4.9E-07 1.1E-11 74.1 7.8 94 64-227 3-111 (112)
31 PRK06202 hypothetical protein; 98.5 4.5E-06 9.8E-11 78.1 14.8 162 61-297 59-221 (232)
32 PRK11873 arsM arsenite S-adeno 98.5 2.2E-06 4.8E-11 82.0 12.7 150 62-298 77-230 (272)
33 PF02353 CMAS: Mycolic acid cy 98.5 2.2E-05 4.8E-10 75.9 19.6 92 204-327 143-235 (273)
34 TIGR00477 tehB tellurite resis 98.4 3.5E-06 7.5E-11 77.2 12.9 135 63-297 31-168 (195)
35 PRK12335 tellurite resistance 98.4 2.8E-06 6E-11 82.4 12.8 76 150-297 182-258 (287)
36 PF08242 Methyltransf_12: Meth 98.4 4.8E-07 1E-11 73.1 5.4 96 67-223 1-99 (99)
37 PF13847 Methyltransf_31: Meth 98.3 1.6E-06 3.4E-11 75.8 7.2 107 62-229 3-112 (152)
38 COG2230 Cfa Cyclopropane fatty 98.2 0.00018 3.9E-09 69.7 19.1 182 62-353 72-269 (283)
39 KOG3010 Methyltransferase [Gen 98.2 3.6E-05 7.8E-10 72.5 13.8 104 63-233 34-142 (261)
40 KOG2940 Predicted methyltransf 98.2 2.5E-05 5.3E-10 73.2 12.5 114 148-323 133-249 (325)
41 PF03848 TehB: Tellurite resis 98.1 1.1E-05 2.3E-10 74.2 9.1 94 62-229 30-135 (192)
42 TIGR01983 UbiG ubiquinone bios 98.1 0.00011 2.4E-09 67.8 15.2 94 150-298 110-203 (224)
43 TIGR02021 BchM-ChlM magnesium 98.1 0.00023 4.9E-09 66.0 17.1 29 271-300 180-208 (219)
44 TIGR02716 C20_methyl_CrtF C-20 98.1 8.1E-05 1.8E-09 72.6 14.6 149 62-293 149-301 (306)
45 TIGR02081 metW methionine bios 98.0 2.1E-05 4.5E-10 71.7 8.7 27 273-300 143-169 (194)
46 PRK00121 trmB tRNA (guanine-N( 98.0 1.3E-05 2.9E-10 73.8 7.4 159 29-260 13-174 (202)
47 PRK06922 hypothetical protein; 98.0 6.9E-06 1.5E-10 87.4 6.2 116 63-227 419-537 (677)
48 KOG1270 Methyltransferases [Co 98.0 3.7E-05 8E-10 73.3 10.0 76 205-297 173-248 (282)
49 PF08003 Methyltransf_9: Prote 98.0 5.1E-05 1.1E-09 74.0 10.5 143 62-292 115-261 (315)
50 PRK05134 bifunctional 3-demeth 98.0 0.00021 4.6E-09 66.5 14.2 94 149-297 111-204 (233)
51 PLN02336 phosphoethanolamine N 98.0 4.1E-05 8.8E-10 79.2 10.2 135 63-289 38-174 (475)
52 KOG1541 Predicted protein carb 98.0 3.3E-05 7.1E-10 72.0 8.4 141 22-232 21-165 (270)
53 TIGR00138 gidB 16S rRNA methyl 97.9 8.5E-05 1.8E-09 67.4 10.9 128 63-272 43-173 (181)
54 PF05401 NodS: Nodulation prot 97.9 3.7E-05 8.1E-10 70.6 8.3 95 60-228 41-147 (201)
55 PRK07580 Mg-protoporphyrin IX 97.9 0.00026 5.6E-09 65.5 14.1 29 271-300 188-216 (230)
56 PRK11188 rrmJ 23S rRNA methylt 97.9 6.5E-05 1.4E-09 69.7 9.5 110 63-231 52-169 (209)
57 smart00138 MeTrc Methyltransfe 97.9 7.4E-05 1.6E-09 71.8 9.9 43 148-226 199-241 (264)
58 PRK05785 hypothetical protein; 97.9 0.00011 2.4E-09 68.9 10.9 75 63-168 52-126 (226)
59 TIGR03438 probable methyltrans 97.9 6.2E-05 1.3E-09 73.6 9.1 113 63-232 64-182 (301)
60 KOG2361 Predicted methyltransf 97.8 7.9E-05 1.7E-09 70.3 8.9 212 6-299 12-238 (264)
61 KOG1540 Ubiquinone biosynthesi 97.8 0.00012 2.6E-09 69.6 9.5 171 61-295 99-278 (296)
62 PRK11088 rrmA 23S rRNA methylt 97.8 0.0001 2.2E-09 70.8 8.7 76 62-161 85-160 (272)
63 TIGR00091 tRNA (guanine-N(7)-) 97.7 0.00013 2.8E-09 66.7 7.7 114 63-228 17-133 (194)
64 PTZ00146 fibrillarin; Provisio 97.7 0.00054 1.2E-08 66.8 12.3 21 63-83 133-153 (293)
65 TIGR03840 TMPT_Se_Te thiopurin 97.7 0.00063 1.4E-08 63.4 12.3 58 207-300 132-189 (213)
66 TIGR03587 Pse_Me-ase pseudamin 97.7 0.00027 5.8E-09 65.4 9.5 106 20-166 14-119 (204)
67 PRK00107 gidB 16S rRNA methylt 97.6 0.00055 1.2E-08 62.6 11.0 24 205-228 123-146 (187)
68 PF13649 Methyltransf_25: Meth 97.6 4.4E-05 9.6E-10 61.9 3.5 98 66-221 1-101 (101)
69 PF05175 MTS: Methyltransferas 97.6 0.00062 1.3E-08 60.9 11.0 108 63-228 32-141 (170)
70 PRK15001 SAM-dependent 23S rib 97.6 0.00037 7.9E-09 70.5 10.3 105 64-227 230-340 (378)
71 PRK13255 thiopurine S-methyltr 97.6 0.0012 2.5E-08 61.9 13.0 58 207-300 135-192 (218)
72 PLN02585 magnesium protoporphy 97.6 0.0016 3.5E-08 64.3 14.5 29 273-302 275-303 (315)
73 COG4123 Predicted O-methyltran 97.5 0.0005 1.1E-08 65.5 9.8 116 61-229 43-172 (248)
74 cd02440 AdoMet_MTases S-adenos 97.5 0.00031 6.8E-09 54.4 6.7 99 65-226 1-103 (107)
75 TIGR00438 rrmJ cell division p 97.5 0.00055 1.2E-08 62.0 9.1 25 205-229 124-148 (188)
76 TIGR02469 CbiT precorrin-6Y C5 97.5 0.00023 5E-09 58.8 5.9 22 207-228 102-123 (124)
77 PRK09489 rsmC 16S ribosomal RN 97.4 0.00019 4.2E-09 71.6 5.9 105 64-228 198-304 (342)
78 PLN02232 ubiquinone biosynthes 97.4 0.00082 1.8E-08 59.6 9.0 101 148-295 40-144 (160)
79 PF00891 Methyltransf_2: O-met 97.4 0.0033 7.2E-08 59.0 13.6 104 62-233 100-205 (241)
80 PRK08287 cobalt-precorrin-6Y C 97.4 0.0013 2.8E-08 59.4 10.3 20 62-81 31-50 (187)
81 PRK00312 pcm protein-L-isoaspa 97.4 0.0015 3.2E-08 60.2 10.8 19 62-80 78-96 (212)
82 TIGR00537 hemK_rel_arch HemK-r 97.4 0.0011 2.5E-08 59.4 9.7 124 64-231 21-144 (179)
83 PRK04266 fibrillarin; Provisio 97.4 0.0013 2.8E-08 61.9 10.5 23 208-230 157-179 (226)
84 PRK13942 protein-L-isoaspartat 97.4 0.0018 4E-08 60.0 10.9 20 62-81 76-95 (212)
85 PRK13944 protein-L-isoaspartat 97.3 0.00063 1.4E-08 62.7 7.6 20 63-82 73-92 (205)
86 TIGR00080 pimt protein-L-isoas 97.3 0.0009 2E-08 62.0 7.9 20 62-81 77-96 (215)
87 COG2242 CobL Precorrin-6B meth 97.3 0.0039 8.5E-08 56.9 11.4 47 62-117 34-94 (187)
88 PRK14967 putative methyltransf 97.2 0.0029 6.3E-08 58.9 10.6 167 63-289 37-204 (223)
89 PF06080 DUF938: Protein of un 97.2 0.0047 1E-07 57.3 11.8 168 36-295 8-189 (204)
90 PRK14121 tRNA (guanine-N(7)-)- 97.2 0.0018 3.9E-08 65.7 9.1 110 63-227 123-235 (390)
91 PHA03411 putative methyltransf 97.1 0.0034 7.4E-08 60.8 10.3 120 64-231 66-187 (279)
92 PF07021 MetW: Methionine bios 97.1 0.0019 4.1E-08 59.2 7.6 94 147-300 70-169 (193)
93 PF05148 Methyltransf_8: Hypot 97.1 0.0011 2.3E-08 61.7 5.9 87 61-227 71-158 (219)
94 TIGR03533 L3_gln_methyl protei 97.0 0.0067 1.5E-07 58.9 11.6 23 206-228 230-252 (284)
95 TIGR03534 RF_mod_PrmC protein- 97.0 0.001 2.2E-08 62.3 5.1 124 63-227 88-217 (251)
96 COG2227 UbiG 2-polyprenyl-3-me 96.9 0.002 4.3E-08 61.0 6.5 74 207-297 141-214 (243)
97 PF03141 Methyltransf_29: Puta 96.9 0.00043 9.4E-09 71.4 2.2 106 60-231 115-223 (506)
98 PF05891 Methyltransf_PK: AdoM 96.9 0.0045 9.7E-08 57.9 8.5 134 61-299 54-202 (218)
99 PF13659 Methyltransf_26: Meth 96.9 0.0034 7.4E-08 51.6 6.9 24 205-228 93-116 (117)
100 PRK14968 putative methyltransf 96.8 0.032 7E-07 49.5 13.3 23 206-228 127-149 (188)
101 TIGR00406 prmA ribosomal prote 96.8 0.0043 9.4E-08 60.3 8.0 23 208-230 240-262 (288)
102 PRK00517 prmA ribosomal protei 96.8 0.011 2.3E-07 56.3 10.1 18 63-80 120-137 (250)
103 PLN03075 nicotianamine synthas 96.7 0.0091 2E-07 58.5 9.4 104 62-227 123-233 (296)
104 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0057 1.2E-07 60.8 8.0 45 151-229 144-188 (331)
105 PRK11805 N5-glutamine S-adenos 96.7 0.0072 1.6E-07 59.5 8.4 22 207-228 243-264 (307)
106 KOG3178 Hydroxyindole-O-methyl 96.6 0.042 9.1E-07 54.6 13.6 196 7-298 129-330 (342)
107 KOG4300 Predicted methyltransf 96.6 0.008 1.7E-07 55.9 7.9 153 63-302 77-236 (252)
108 TIGR00536 hemK_fam HemK family 96.5 0.007 1.5E-07 58.6 7.4 25 205-229 222-246 (284)
109 PRK09328 N5-glutamine S-adenos 96.5 0.0071 1.5E-07 57.6 6.9 23 205-227 216-238 (275)
110 PRK00811 spermidine synthase; 96.4 0.015 3.2E-07 56.5 9.0 108 61-227 75-191 (283)
111 PRK14904 16S rRNA methyltransf 96.4 0.024 5.3E-07 58.5 10.6 124 63-231 251-381 (445)
112 KOG3045 Predicted RNA methylas 96.3 0.0091 2E-07 57.2 6.6 41 148-227 224-264 (325)
113 PRK10901 16S rRNA methyltransf 96.3 0.045 9.8E-07 56.2 12.2 125 63-229 245-374 (427)
114 PF01135 PCMT: Protein-L-isoas 96.3 0.019 4E-07 53.5 8.5 19 63-81 73-91 (209)
115 PRK14903 16S rRNA methyltransf 96.3 0.015 3.2E-07 59.9 8.5 127 63-231 238-370 (431)
116 PRK00377 cbiT cobalt-precorrin 96.2 0.016 3.4E-07 53.0 7.5 23 206-228 124-146 (198)
117 COG2518 Pcm Protein-L-isoaspar 96.2 0.024 5.2E-07 52.8 8.5 20 62-81 72-91 (209)
118 PRK07402 precorrin-6B methylas 96.1 0.077 1.7E-06 48.2 11.5 25 205-229 120-144 (196)
119 TIGR00563 rsmB ribosomal RNA s 95.9 0.046 9.9E-07 56.1 9.8 128 63-231 239-372 (426)
120 PRK01544 bifunctional N5-gluta 95.9 0.018 3.9E-07 60.5 6.9 125 63-227 139-269 (506)
121 PRK14902 16S rRNA methyltransf 95.9 0.039 8.4E-07 56.9 9.3 125 63-229 251-381 (444)
122 PRK14966 unknown domain/N5-glu 95.6 0.036 7.9E-07 56.8 7.7 22 206-227 360-381 (423)
123 COG2264 PrmA Ribosomal protein 95.6 0.02 4.3E-07 56.2 5.4 20 62-81 162-181 (300)
124 TIGR01177 conserved hypothetic 95.4 0.19 4E-06 49.8 11.9 26 206-231 273-298 (329)
125 PRK14901 16S rRNA methyltransf 95.4 0.083 1.8E-06 54.4 9.4 26 204-229 361-386 (434)
126 COG2813 RsmC 16S RNA G1207 met 95.4 0.081 1.8E-06 51.8 8.8 102 64-229 160-268 (300)
127 PF02390 Methyltransf_4: Putat 95.3 0.02 4.3E-07 52.7 4.1 111 65-227 20-133 (195)
128 PRK13943 protein-L-isoaspartat 95.2 0.042 9.2E-07 54.5 6.5 19 63-81 81-99 (322)
129 PRK04457 spermidine synthase; 95.2 0.12 2.6E-06 49.7 9.3 24 208-231 158-181 (262)
130 TIGR00417 speE spermidine synt 95.0 0.13 2.8E-06 49.5 9.0 19 208-226 167-185 (270)
131 TIGR03704 PrmC_rel_meth putati 94.9 0.061 1.3E-06 51.3 6.4 23 206-228 195-217 (251)
132 PRK03612 spermidine synthase; 94.8 0.094 2E-06 55.3 8.1 62 208-286 396-457 (521)
133 COG4976 Predicted methyltransf 94.7 0.12 2.7E-06 48.9 7.6 64 205-299 203-266 (287)
134 TIGR00446 nop2p NOL1/NOP2/sun 94.6 0.1 2.2E-06 50.0 7.2 28 203-230 175-202 (264)
135 KOG1975 mRNA cap methyltransfe 94.3 0.13 2.9E-06 50.8 7.0 63 132-230 173-240 (389)
136 KOG1331 Predicted methyltransf 94.2 0.052 1.1E-06 52.6 4.1 56 145-235 96-151 (293)
137 smart00650 rADc Ribosomal RNA 94.2 0.13 2.9E-06 45.6 6.5 20 63-82 14-33 (169)
138 KOG2904 Predicted methyltransf 93.7 1 2.2E-05 43.8 11.7 120 64-233 150-291 (328)
139 PLN02366 spermidine synthase 93.6 0.16 3.5E-06 50.1 6.4 110 61-227 90-206 (308)
140 PRK01544 bifunctional N5-gluta 93.2 0.25 5.4E-06 52.0 7.4 138 28-226 322-461 (506)
141 KOG2899 Predicted methyltransf 93.2 0.3 6.5E-06 46.6 7.1 83 150-288 164-246 (288)
142 KOG1499 Protein arginine N-met 93.1 0.24 5.3E-06 49.3 6.7 93 62-224 60-164 (346)
143 PF10294 Methyltransf_16: Puta 92.7 0.16 3.5E-06 45.6 4.5 28 205-232 134-161 (173)
144 PF12147 Methyltransf_20: Puta 92.4 6.2 0.00013 38.8 15.1 61 208-292 230-292 (311)
145 PHA03412 putative methyltransf 92.2 0.39 8.5E-06 45.7 6.5 74 63-161 50-123 (241)
146 COG0220 Predicted S-adenosylme 92.1 0.36 7.8E-06 45.6 6.2 61 137-227 104-164 (227)
147 PRK11783 rlmL 23S rRNA m(2)G24 92.0 0.93 2E-05 49.6 10.1 26 203-228 632-657 (702)
148 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.9 0.21 4.5E-06 48.1 4.4 82 151-297 157-238 (256)
149 COG2890 HemK Methylase of poly 91.8 0.17 3.7E-06 49.1 3.8 23 206-228 217-239 (280)
150 PRK13168 rumA 23S rRNA m(5)U19 91.5 0.66 1.4E-05 47.9 8.0 19 63-81 298-316 (443)
151 PRK01581 speE spermidine synth 91.5 0.29 6.2E-06 49.5 5.1 19 208-226 249-267 (374)
152 PLN02781 Probable caffeoyl-CoA 91.4 0.42 9.2E-06 45.0 6.0 20 62-81 68-87 (234)
153 PRK13256 thiopurine S-methyltr 91.4 2.1 4.6E-05 40.4 10.5 19 63-81 44-62 (226)
154 PF05724 TPMT: Thiopurine S-me 91.3 6.2 0.00013 36.9 13.5 142 62-300 37-192 (218)
155 TIGR03439 methyl_EasF probable 90.9 1.3 2.7E-05 44.1 8.9 119 62-232 76-202 (319)
156 PRK10611 chemotaxis methyltran 90.9 0.77 1.7E-05 44.9 7.3 19 207-225 242-260 (287)
157 PRK00274 ksgA 16S ribosomal RN 90.2 0.31 6.7E-06 46.9 3.8 20 63-82 43-62 (272)
158 PRK15128 23S rRNA m(5)C1962 me 89.0 2.8 6E-05 42.9 9.9 26 202-227 314-339 (396)
159 PF08123 DOT1: Histone methyla 87.8 2.1 4.6E-05 39.7 7.5 22 204-225 135-156 (205)
160 PLN02672 methionine S-methyltr 87.3 0.94 2E-05 51.8 5.7 25 207-231 258-282 (1082)
161 PF05185 PRMT5: PRMT5 arginine 86.9 1.2 2.6E-05 46.2 5.8 23 62-84 186-208 (448)
162 COG1352 CheR Methylase of chem 85.7 9.5 0.00021 37.0 10.9 115 62-225 96-239 (268)
163 COG2519 GCD14 tRNA(1-methylade 84.2 14 0.00031 35.5 11.1 45 208-267 176-220 (256)
164 COG0030 KsgA Dimethyladenosine 83.3 5.3 0.00011 38.5 8.0 52 63-125 31-94 (259)
165 PF06859 Bin3: Bicoid-interact 82.7 0.36 7.9E-06 40.5 -0.2 44 153-228 2-45 (110)
166 COG2263 Predicted RNA methylas 82.6 2.2 4.8E-05 39.3 4.8 51 63-125 46-109 (198)
167 PF05219 DREV: DREV methyltran 82.4 6.6 0.00014 37.9 8.1 20 62-81 94-113 (265)
168 KOG1661 Protein-L-isoaspartate 81.9 5.5 0.00012 37.4 7.1 19 63-81 83-101 (237)
169 PF11968 DUF3321: Putative met 81.5 9 0.0002 36.0 8.5 93 62-229 51-151 (219)
170 PF06325 PrmA: Ribosomal prote 81.2 1.7 3.7E-05 42.7 3.8 17 64-80 163-179 (295)
171 PRK11727 23S rRNA mA1618 methy 80.7 4.2 9E-05 40.5 6.4 20 61-80 113-132 (321)
172 PF13679 Methyltransf_32: Meth 80.3 2.1 4.6E-05 36.8 3.8 22 61-82 24-45 (141)
173 PRK03522 rumB 23S rRNA methylu 80.3 2.2 4.7E-05 41.9 4.3 19 63-81 174-192 (315)
174 TIGR00478 tly hemolysin TlyA f 79.5 1 2.2E-05 42.6 1.5 21 62-82 75-95 (228)
175 PTZ00338 dimethyladenosine tra 79.4 2.3 5E-05 41.6 4.1 50 63-120 37-98 (294)
176 COG0500 SmtA SAM-dependent met 79.1 8.6 0.00019 30.2 6.8 26 208-233 136-161 (257)
177 KOG1271 Methyltransferases [Ge 78.9 24 0.00052 32.7 10.1 17 64-80 69-85 (227)
178 PLN02823 spermine synthase 75.5 11 0.00025 37.6 7.8 21 61-81 102-122 (336)
179 TIGR00755 ksgA dimethyladenosi 75.0 3.3 7.2E-05 39.2 3.8 21 62-82 29-49 (253)
180 PRK14896 ksgA 16S ribosomal RN 74.6 1.8 3.9E-05 41.2 1.8 20 63-82 30-49 (258)
181 PF08704 GCD14: tRNA methyltra 72.9 14 0.0003 35.4 7.4 22 63-84 41-62 (247)
182 PRK11933 yebU rRNA (cytosine-C 72.3 16 0.00035 38.2 8.3 125 63-230 114-245 (470)
183 TIGR00479 rumA 23S rRNA (uraci 70.7 14 0.0003 37.9 7.3 19 63-81 293-311 (431)
184 PF09243 Rsm22: Mitochondrial 70.6 46 0.001 32.1 10.6 84 61-166 32-116 (274)
185 PRK04148 hypothetical protein; 70.0 11 0.00024 32.7 5.5 20 62-81 16-36 (134)
186 PRK11524 putative methyltransf 69.4 11 0.00023 36.6 5.9 22 206-227 59-80 (284)
187 PF07942 N2227: N2227-like pro 69.3 33 0.00072 33.3 9.2 93 135-298 145-242 (270)
188 PRK10909 rsmD 16S rRNA m(2)G96 64.1 3.9 8.4E-05 37.7 1.6 18 64-81 55-72 (199)
189 PLN02589 caffeoyl-CoA O-methyl 64.0 7.4 0.00016 37.2 3.5 21 62-82 79-99 (247)
190 PF02384 N6_Mtase: N-6 DNA Met 64.0 37 0.00081 32.8 8.6 133 62-229 46-185 (311)
191 KOG3191 Predicted N6-DNA-methy 63.0 9.4 0.0002 35.2 3.8 39 38-85 28-66 (209)
192 COG1189 Predicted rRNA methyla 61.7 8.1 0.00018 36.9 3.2 22 61-82 78-99 (245)
193 PF01728 FtsJ: FtsJ-like methy 61.5 4.9 0.00011 35.7 1.8 38 61-119 22-59 (181)
194 TIGR02085 meth_trns_rumB 23S r 61.5 9.5 0.00021 38.5 4.0 18 64-81 235-252 (374)
195 KOG4589 Cell division protein 59.3 11 0.00023 35.0 3.5 23 62-84 69-91 (232)
196 KOG1500 Protein arginine N-met 58.7 11 0.00024 37.9 3.7 71 204-276 260-343 (517)
197 PF07091 FmrO: Ribosomal RNA m 56.4 18 0.00039 34.8 4.6 21 61-81 104-124 (251)
198 PRK05031 tRNA (uracil-5-)-meth 53.6 40 0.00087 33.9 6.9 18 64-81 208-225 (362)
199 cd08788 CARD_NOD2_2_CARD15 Cas 51.5 29 0.00064 27.5 4.3 44 244-288 12-55 (81)
200 TIGR00095 RNA methyltransferas 51.5 9 0.0002 34.8 1.7 18 64-81 51-68 (189)
201 COG3963 Phospholipid N-methylt 51.2 1.2E+02 0.0026 27.8 8.7 20 62-81 48-67 (194)
202 PF00398 RrnaAD: Ribosomal RNA 47.4 97 0.0021 29.4 8.2 51 62-123 30-92 (262)
203 COG5124 Protein predicted to b 47.3 12 0.00026 34.0 1.8 37 242-278 39-75 (209)
204 KOG3115 Methyltransferase-like 46.0 9.9 0.00022 35.7 1.1 18 63-80 61-78 (249)
205 TIGR02143 trmA_only tRNA (urac 46.0 23 0.0005 35.5 3.8 17 65-81 200-216 (353)
206 KOG2798 Putative trehalase [Ca 45.6 3.3E+02 0.0072 27.4 11.5 66 205-300 274-339 (369)
207 PF01739 CheR: CheR methyltran 44.6 17 0.00036 33.5 2.4 114 61-226 30-174 (196)
208 TIGR01444 fkbM_fam methyltrans 44.5 12 0.00025 31.6 1.2 17 65-81 1-17 (143)
209 PF03962 Mnd1: Mnd1 family; I 44.4 15 0.00033 33.6 2.1 38 242-279 26-63 (188)
210 PF07757 AdoMet_MTase: Predict 43.2 13 0.00029 31.2 1.3 20 61-80 57-76 (112)
211 PRK00050 16S rRNA m(4)C1402 me 42.0 54 0.0012 32.2 5.6 27 204-230 213-239 (296)
212 PF02375 JmjN: jmjN domain; I 41.6 11 0.00024 24.9 0.5 15 272-286 1-15 (34)
213 PHA00457 inhibitor of host bac 37.6 31 0.00068 25.7 2.4 30 267-297 25-58 (63)
214 PF09851 SHOCT: Short C-termin 36.8 29 0.00063 22.2 1.9 17 251-267 7-23 (31)
215 PRK04338 N(2),N(2)-dimethylgua 35.4 33 0.00071 34.9 3.1 48 19-81 29-76 (382)
216 PF04672 Methyltransf_19: S-ad 35.2 87 0.0019 30.4 5.7 59 210-293 173-231 (267)
217 PF14904 FAM86: Family of unkn 34.8 38 0.00082 28.0 2.7 31 315-345 67-99 (100)
218 PF13260 DUF4051: Protein of u 33.9 57 0.0012 23.3 3.1 27 195-221 22-48 (54)
219 KOG3420 Predicted RNA methylas 33.9 13 0.00029 33.1 -0.1 19 62-80 48-66 (185)
220 PF09445 Methyltransf_15: RNA 33.6 23 0.00051 31.7 1.5 19 65-83 2-20 (163)
221 PRK11760 putative 23S rRNA C24 33.3 26 0.00056 35.4 1.8 20 62-81 211-230 (357)
222 KOG3433 Protein involved in me 32.8 31 0.00067 31.6 2.1 37 242-278 38-74 (203)
223 PF02268 TFIIA_gamma_N: Transc 32.5 47 0.001 23.9 2.6 22 244-265 11-32 (49)
224 PRK13699 putative methylase; P 31.0 83 0.0018 29.5 4.8 21 207-227 52-72 (227)
225 TIGR02987 met_A_Alw26 type II 30.6 34 0.00074 36.0 2.3 23 62-84 31-53 (524)
226 COG4627 Uncharacterized protei 30.5 20 0.00042 32.4 0.4 24 206-229 65-88 (185)
227 smart00545 JmjN Small domain f 28.9 33 0.00073 23.7 1.3 16 271-286 2-17 (42)
228 KOG1122 tRNA and rRNA cytosine 27.7 3.7E+02 0.0079 28.1 8.9 133 61-231 240-375 (460)
229 TIGR00730 conserved hypothetic 27.2 97 0.0021 28.0 4.4 41 244-287 137-177 (178)
230 PF07101 DUF1363: Protein of u 26.5 27 0.00059 28.7 0.6 12 67-79 7-18 (124)
231 PF01596 Methyltransf_3: O-met 24.7 46 0.001 30.8 1.8 22 62-83 45-66 (205)
232 PF09597 IGR: IGR protein moti 24.5 52 0.0011 24.4 1.7 27 196-222 13-39 (57)
233 smart00400 ZnF_CHCC zinc finge 23.9 63 0.0014 23.1 2.0 21 64-84 22-42 (55)
234 KOG0820 Ribosomal RNA adenine 23.8 2E+02 0.0044 28.3 6.0 52 61-120 57-120 (315)
235 COG4798 Predicted methyltransf 23.7 95 0.0021 29.1 3.6 18 63-80 49-66 (238)
236 PF10357 Kin17_mid: Domain of 22.9 65 0.0014 27.8 2.2 26 191-216 10-35 (127)
237 PF02636 Methyltransf_28: Puta 22.9 64 0.0014 30.4 2.5 23 62-84 18-40 (252)
238 PF03514 GRAS: GRAS domain fam 22.8 2.7E+02 0.0058 28.2 7.0 45 61-120 109-153 (374)
239 COG0293 FtsJ 23S rRNA methylas 22.7 1.2E+02 0.0027 28.2 4.2 85 23-121 15-99 (205)
240 COG4076 Predicted RNA methylas 22.3 51 0.0011 30.7 1.6 20 64-83 34-53 (252)
241 COG2521 Predicted archaeal met 21.8 1.4E+02 0.0031 28.8 4.4 20 61-80 133-152 (287)
242 KOG2920 Predicted methyltransf 21.6 46 0.00099 32.6 1.2 35 36-80 99-134 (282)
243 PF04816 DUF633: Family of unk 21.4 47 0.001 30.8 1.2 23 276-299 103-125 (205)
244 PRK01747 mnmC bifunctional tRN 21.2 58 0.0013 35.3 2.0 24 61-84 56-79 (662)
245 PF03141 Methyltransf_29: Puta 21.1 2.6E+02 0.0057 29.7 6.6 130 17-225 332-465 (506)
246 TIGR00006 S-adenosyl-methyltra 20.8 1E+02 0.0022 30.6 3.4 26 204-229 217-242 (305)
247 COG0275 Predicted S-adenosylme 20.6 1E+02 0.0022 30.6 3.3 33 198-230 215-247 (314)
248 PF03641 Lysine_decarbox: Poss 20.0 1.3E+02 0.0029 25.5 3.6 39 244-285 95-133 (133)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.8e-97 Score=737.46 Aligned_cols=347 Identities=33% Similarity=0.543 Sum_probs=310.3
Q ss_pred cCccccccCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHH
Q 017363 9 LPGSFPMVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAV 88 (373)
Q Consensus 9 ~~~~~~M~gG~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i 88 (373)
++++|||+||+|++||++||.+|+.++..++|+|+++|+++. .+.+ +.++++|||||||+|+||+.+++.||++|
T Consensus 15 ~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~----p~~~~~iaDlGcs~G~ntl~~vs~iI~~i 89 (386)
T PLN02668 15 LEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS----PEVPFTAVDLGCSSGSNTIHIIDVIVKHM 89 (386)
T ss_pred eccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC----CCcceeEEEecCCCCccHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999998853 2211 13689999999999999999999999999
Q ss_pred HHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCC----------------ccceeeccCcccccCCCCCCc
Q 017363 89 QTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPS----------------RKYFAFGVPGSFHGRLFPKSS 152 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~----------------~~~f~~gvpgSFy~rlfP~~S 152 (373)
+++|+..+ +++|+|||||||||+||||+||++||+. ++||++|||||||+||||++|
T Consensus 90 ~~~~~~~~-------~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~S 162 (386)
T PLN02668 90 SKRYESAG-------LDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARS 162 (386)
T ss_pred HHHhhhcC-------CCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCc
Confidence 99998743 3578999999999999999999999752 249999999999999999999
Q ss_pred ceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCC
Q 017363 153 LHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPN 232 (373)
Q Consensus 153 vd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 232 (373)
+||+||++||||||++|+++.++.++.||||+||+++++|+|.+||++||++||..||++||+||+|||+||++++||++
T Consensus 163 lh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 163 IDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred eEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccCCCchhHHHH-HHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEecCC--CCCCCC-
Q 017363 233 GVPMIDSNGGKLYGF-LGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLPDP--PLMRLK- 308 (373)
Q Consensus 233 ~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~~~--~~~~~~- 308 (373)
..+..+...+.+|+. +.++|++||.||+|++||+|+||+|+|+||.+|++++|+++|+|+|+++|+++.. .+.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~ 322 (386)
T PLN02668 243 VDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPD 322 (386)
T ss_pred CCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcc
Confidence 666554445667877 9999999999999999999999999999999999999999999999999998742 111111
Q ss_pred ---CCHHHHHHhHHHhhhhHHHhhhChHHHHHHHHHHHHHHHhhccccccccCCCeEEEEEEEE
Q 017363 309 ---PSPESVTSQIRAVFEGVVKEHFGYDLVDKIFNFFTAKFAENFIFGELIKDHNNVNLFVLLK 369 (373)
Q Consensus 309 ---~~~~~~~~~iRa~~e~~l~~h~g~~i~delf~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (373)
..++.+++++||++||+|++|||++++|+||+||+++++++.+... ...++.+++++|.
T Consensus 323 d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~--~~~~~~~~~~sL~ 384 (386)
T PLN02668 323 DAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELL--EKLQFFHIVASLS 384 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhc--ccCceEEEEEEEe
Confidence 2356799999999999999999999999999999999998877631 3456888888875
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=9.1e-92 Score=691.49 Aligned_cols=317 Identities=44% Similarity=0.776 Sum_probs=261.5
Q ss_pred HHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCch
Q 017363 42 ISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDF 121 (373)
Q Consensus 42 l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDF 121 (373)
+++||.+++... ..+++++|||||||+|+||+.+|+.||++|+++|++.+. +++|+|||||||||+|||
T Consensus 1 ~~~ai~~~~~~~-----~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~------~~~~e~~v~~nDlP~NDF 69 (334)
T PF03492_consen 1 LEEAIKELYNSS-----NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNN------QPPPEFQVFFNDLPSNDF 69 (334)
T ss_dssp -HHHHHHHHHST-----TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-------SS--EEEEEEEE-TTS-H
T ss_pred ChHHHHHHHhcC-----CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcC------CCCCeEEEEeCCCCCccH
Confidence 467888765322 257899999999999999999999999999999987541 468999999999999999
Q ss_pred hhHhhcCCCC-------ccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeec-CCCHH
Q 017363 122 NTLFQTMPPS-------RKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICS-GLVKG 193 (373)
Q Consensus 122 n~lf~~l~~~-------~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~-~~~~~ 193 (373)
|+||++||+. ++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++
T Consensus 70 n~lF~~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~ 149 (334)
T PF03492_consen 70 NTLFKSLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPE 149 (334)
T ss_dssp HHHHHCHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HH
T ss_pred HHHHHhChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHH
Confidence 9999999865 799999999999999999999999999999999999999999999999999999998 78999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCccc
Q 017363 194 VSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPL 273 (373)
Q Consensus 194 ~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~ 273 (373)
|.+||++||++||..||++||+||+|||+||++++||++..+.. .+.+.+|++|+++|++||.||+|++|++|+||+|+
T Consensus 150 v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~ 228 (334)
T PF03492_consen 150 VAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSS-TGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPI 228 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTS-TTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SB
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEEeecccccccc-CCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCc
Confidence 99999999999999999999999999999999999999855432 34567999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcCceEEeEEEEecCCCCCC---------CCCCHHHHHHhHHHhhhhHHHhhhChHHHHHHHHHHHH
Q 017363 274 YFPTAEELKAIIERNGCFRIERMDKLPDPPLMR---------LKPSPESVTSQIRAVFEGVVKEHFGYDLVDKIFNFFTA 344 (373)
Q Consensus 274 y~ps~eE~~~~ie~~gsF~I~~le~~~~~~~~~---------~~~~~~~~~~~iRa~~e~~l~~h~g~~i~delf~ry~~ 344 (373)
|+||.+|++++|+++|+|+|+++|.++...+.. ...+++.+++++||++||++++|||++++|+||+||++
T Consensus 229 Y~ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~ 308 (334)
T PF03492_consen 229 YFPSPEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAK 308 (334)
T ss_dssp B---HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999999999887322211 01357899999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCeEEEEEEEEec
Q 017363 345 KFAENFIFGELIKDHNNVNLFVLLKRV 371 (373)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~r~ 371 (373)
+++++++... .+.+++++++++|+||
T Consensus 309 ~v~~~~~~~~-~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 309 KVAEHLEKEK-SRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHHTH-TT-BEEEEEEEEEEE-
T ss_pred HHHHHHHHhh-ccCCCcEEEEEEEeeC
Confidence 9999998643 2446799999999998
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=6.9e-13 Score=125.78 Aligned_cols=249 Identities=14% Similarity=0.145 Sum_probs=148.7
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcC
Q 017363 22 YSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQ 101 (373)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~ 101 (373)
..|.+++..|.+....++.. + . .....+|+|+|||+|..+..+.+. +
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~--------~--~------~~~~~~vLDiGcG~G~~~~~la~~--------~--------- 53 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLAR--------V--P------LENPRYVVDLGCGPGNSTELLVER--------W--------- 53 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhh--------C--C------CcCCCEEEEEcccCCHHHHHHHHH--------C---------
Confidence 46999998887766543222 1 1 123579999999999998766322 1
Q ss_pred CCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCC
Q 017363 102 NSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWN 181 (373)
Q Consensus 102 ~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~n 181 (373)
+.-+|+..|+...-....=+.++ +.-|..+.. ..+.|++++|+++|+.++||+..
T Consensus 54 -----~~~~v~gvD~s~~~i~~a~~~~~--~~~~~~~d~----~~~~~~~~fD~v~~~~~l~~~~d-------------- 108 (258)
T PRK01683 54 -----PAARITGIDSSPAMLAEARSRLP--DCQFVEADI----ASWQPPQALDLIFANASLQWLPD-------------- 108 (258)
T ss_pred -----CCCEEEEEECCHHHHHHHHHhCC--CCeEEECch----hccCCCCCccEEEEccChhhCCC--------------
Confidence 12278888876432221111111 122444443 24457789999999999999752
Q ss_pred CCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCC
Q 017363 182 KGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLI 261 (373)
Q Consensus 182 kg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli 261 (373)
...+|+.-.+-|+|||++++.+.+.... + .+.. ++++.....-
T Consensus 109 ------------------------~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~--------~~~~----~~~~~~~~~w 151 (258)
T PRK01683 109 ------------------------HLELFPRLVSLLAPGGVLAVQMPDNLDE-P--------SHVL----MREVAENGPW 151 (258)
T ss_pred ------------------------HHHHHHHHHHhcCCCcEEEEECCCCCCC-H--------HHHH----HHHHHccCch
Confidence 3357778888999999999986542211 1 1111 1222211110
Q ss_pred ChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEecCCCCCCCCCCHHHHHHhHHHh-hhhHHHhhhChHHHHHHHH
Q 017363 262 DEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLPDPPLMRLKPSPESVTSQIRAV-FEGVVKEHFGYDLVDKIFN 340 (373)
Q Consensus 262 ~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~-~e~~l~~h~g~~i~delf~ 340 (373)
.+.-...-..+.+.++.+++...+...| +.++..+.... ..+. +++.+..|+++. +.+++ .+++++..++|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~ 225 (258)
T PRK01683 152 EQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYY-HPMP---SAQAIVEWVKGTGLRPFL-DPLTESEQAAFLA 225 (258)
T ss_pred HHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeee-eecC---CchhhhhhhhhccHHHHH-hhCCHHHHHHHHH
Confidence 0000001112346789999999999998 66654443222 2222 467888999984 46776 5899999999999
Q ss_pred HHHHHHHhh-ccccccccCCCeEEEEEEEEec
Q 017363 341 FFTAKFAEN-FIFGELIKDHNNVNLFVLLKRV 371 (373)
Q Consensus 341 ry~~~~~~~-~~~~~~~~~~~~~~~~~~l~r~ 371 (373)
.|.+.+.+. +..-.-.-...+..++++-+|+
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 226 AYLARIAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence 999988766 3210000013456666666664
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=9.7e-13 Score=124.95 Aligned_cols=225 Identities=12% Similarity=0.106 Sum_probs=139.2
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcC
Q 017363 22 YSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQ 101 (373)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~ 101 (373)
..|.+++..|......+++.+ . .....+|+|+|||+|..+..+. +++
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l----------~------~~~~~~vLDlGcG~G~~~~~l~--------~~~--------- 51 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARV----------G------AERARRVVDLGCGPGNLTRYLA--------RRW--------- 51 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhC----------C------CCCCCEEEEEcCCCCHHHHHHH--------HHC---------
Confidence 469999999987766432222 1 1245799999999998877652 221
Q ss_pred CCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCC
Q 017363 102 NSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWN 181 (373)
Q Consensus 102 ~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~n 181 (373)
|..+|+-.|+..+- -...+. ..--|..+.. ..+.|.+++|+++|+.++||+..
T Consensus 52 -----p~~~v~gvD~s~~~-~~~a~~---~~~~~~~~d~----~~~~~~~~fD~v~~~~~l~~~~d-------------- 104 (255)
T PRK14103 52 -----PGAVIEALDSSPEM-VAAARE---RGVDARTGDV----RDWKPKPDTDVVVSNAALQWVPE-------------- 104 (255)
T ss_pred -----CCCEEEEEECCHHH-HHHHHh---cCCcEEEcCh----hhCCCCCCceEEEEehhhhhCCC--------------
Confidence 12367788874321 222221 1122444432 35567889999999999999753
Q ss_pred CCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCC
Q 017363 182 KGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLI 261 (373)
Q Consensus 182 kg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli 261 (373)
...+|+.-++-|+|||++++.+.+..+. + .+..+ ..+..++-.
T Consensus 105 ------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~--------~~~~~----~~~~~~~~w 147 (255)
T PRK14103 105 ------------------------HADLLVRWVDELAPGSWIAVQVPGNFDA-P--------SHAAV----RALARREPW 147 (255)
T ss_pred ------------------------HHHHHHHHHHhCCCCcEEEEEcCCCcCC-h--------hHHHH----HHHhccCch
Confidence 2356666778999999999987663211 1 11111 122211111
Q ss_pred Chhh-hcccCcccccCCHHHHHHHHHhcCceEEeEEEEecCCCCCCCCCCHHHHHHhHHHh-hhhHHHhhhChHHHHHHH
Q 017363 262 DEEK-VDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLPDPPLMRLKPSPESVTSQIRAV-FEGVVKEHFGYDLVDKIF 339 (373)
Q Consensus 262 ~~e~-~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~-~e~~l~~h~g~~i~delf 339 (373)
.... -..+..+....+.+++..++++.| |++...+..... ... ....+..|+++. +.++++ .++++..+++-
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 221 (255)
T PRK14103 148 AKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QLT---GEDPVLDWITGTALRPVRE-RLSDDSWEQFR 221 (255)
T ss_pred hHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eCC---Cchhhhhhhhccchhhhhh-hCCHHHHHHHH
Confidence 1000 001223456789999999999999 987665543222 111 345688888864 456666 88988889999
Q ss_pred HHHHHHHHhh
Q 017363 340 NFFTAKFAEN 349 (373)
Q Consensus 340 ~ry~~~~~~~ 349 (373)
+.+.+.+.+.
T Consensus 222 ~~~~~~l~~~ 231 (255)
T PRK14103 222 AELIPLLREA 231 (255)
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=1.4e-11 Score=113.93 Aligned_cols=216 Identities=18% Similarity=0.255 Sum_probs=141.2
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcC
Q 017363 22 YSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQ 101 (373)
Q Consensus 22 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~ 101 (373)
.+|.+.+..|+.+...+.+.+.... ..++.+|+|+|||+|..+..+....
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~~-------------~~~~~~vLDlG~G~G~~~~~l~~~~----------------- 56 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEKG-------------IFIPASVLDIGCGTGYLTRALLKRF----------------- 56 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhhc-------------cCCCCeEEEECCCccHHHHHHHHhC-----------------
Confidence 4799999999988887666654210 1235789999999999877663221
Q ss_pred CCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCC
Q 017363 102 NSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWN 181 (373)
Q Consensus 102 ~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~n 181 (373)
+..+++..|......+..-+.+++ +-.|+.+ ++....+|++++|+++++.++||+.
T Consensus 57 -----~~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~--------------- 112 (240)
T TIGR02072 57 -----PQAEFIALDISAGMLAQAKTKLSE-NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCD--------------- 112 (240)
T ss_pred -----CCCcEEEEeChHHHHHHHHHhcCC-CCeEEec---chhhCCCCCCceeEEEEhhhhhhcc---------------
Confidence 223678888765554444444432 2234333 3445567889999999999999974
Q ss_pred CCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCC
Q 017363 182 KGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLI 261 (373)
Q Consensus 182 kg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli 261 (373)
|...+|+...+-|+|||.+++..++.+.. ..+..++.. .+
T Consensus 113 -----------------------~~~~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~---~~-- 152 (240)
T TIGR02072 113 -----------------------DLSQALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQ---HG-- 152 (240)
T ss_pred -----------------------CHHHHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHH---hc--
Confidence 33468888899999999999987664421 112222221 11
Q ss_pred ChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEecCCCCCCCCCCHHHHHHhHHHhhh-hHHHhhhChHHHHHHHH
Q 017363 262 DEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLPDPPLMRLKPSPESVTSQIRAVFE-GVVKEHFGYDLVDKIFN 340 (373)
Q Consensus 262 ~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~~e-~~l~~h~g~~i~delf~ 340 (373)
..+++.+++.+++... |....++...-...+. ++..+..++|.... ......++.+...++.+
T Consensus 153 -----------~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 216 (240)
T TIGR02072 153 -----------LRYLSLDELKALLKNS--FELLTLEEELITLSFD---DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLE 216 (240)
T ss_pred -----------cCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeCC---CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHH
Confidence 2567899999999876 7665554332222222 56788899988654 33334478888888888
Q ss_pred HHHHHHH
Q 017363 341 FFTAKFA 347 (373)
Q Consensus 341 ry~~~~~ 347 (373)
.|.+...
T Consensus 217 ~~~~~~~ 223 (240)
T TIGR02072 217 RYEQEFQ 223 (240)
T ss_pred HHHHhhc
Confidence 8877664
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.37 E-value=3.7e-11 Score=113.56 Aligned_cols=207 Identities=13% Similarity=0.134 Sum_probs=129.7
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCC
Q 017363 23 SYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQN 102 (373)
Q Consensus 23 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~ 102 (373)
.|.+++..|+.+...+...+. ....-+|+|+|||+|.+|..+ .+.
T Consensus 19 ~Y~~~~~~q~~~a~~l~~~l~----------------~~~~~~vLDiGcG~G~~~~~l--------~~~----------- 63 (251)
T PRK10258 19 HYEQHAELQRQSADALLAMLP----------------QRKFTHVLDAGCGPGWMSRYW--------RER----------- 63 (251)
T ss_pred hHhHHHHHHHHHHHHHHHhcC----------------ccCCCeEEEeeCCCCHHHHHH--------HHc-----------
Confidence 688889999988776544332 123468999999999877655 111
Q ss_pred CCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCC
Q 017363 103 SSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNK 182 (373)
Q Consensus 103 ~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nk 182 (373)
..+++..|+...--...-+..+ ...|..+.. ..-.+|++++|+++|+.++||+..
T Consensus 64 -----~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~---~~~~~~~~~fD~V~s~~~l~~~~d--------------- 118 (251)
T PRK10258 64 -----GSQVTALDLSPPMLAQARQKDA--ADHYLAGDI---ESLPLATATFDLAWSNLAVQWCGN--------------- 118 (251)
T ss_pred -----CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCc---ccCcCCCCcEEEEEECchhhhcCC---------------
Confidence 1168888875422111111111 123444443 333468899999999999999653
Q ss_pred CceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCC
Q 017363 183 GSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLID 262 (373)
Q Consensus 183 g~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 262 (373)
...+|+.-.+-|+|||+++++.++.++. ..+.++|..+-..+
T Consensus 119 -----------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~~--- 160 (251)
T PRK10258 119 -----------------------LSTALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDERP--- 160 (251)
T ss_pred -----------------------HHHHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccCC---
Confidence 3356777778999999999999986542 23444554332111
Q ss_pred hhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEecCCCCCCCCCCHHHHHHhHHHhhhhHH-----HhhhChHHHHH
Q 017363 263 EEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLPDPPLMRLKPSPESVTSQIRAVFEGVV-----KEHFGYDLVDK 337 (373)
Q Consensus 263 ~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~~e~~l-----~~h~g~~i~de 337 (373)
...-+++.+|+...+...+ +++ ..+.+. ..+. ++..+..++|....... ...++...+.+
T Consensus 161 --------~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~--~~f~---~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~ 225 (251)
T PRK10258 161 --------HANRFLPPDAIEQALNGWR-YQH-HIQPIT--LWFD---DALSAMRSLKGIGATHLHEGRDPRILTRSQLQR 225 (251)
T ss_pred --------ccccCCCHHHHHHHHHhCC-cee-eeeEEE--EECC---CHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Confidence 1224678999999998765 543 222221 1232 67889999998765443 23466776666
Q ss_pred HHHHH
Q 017363 338 IFNFF 342 (373)
Q Consensus 338 lf~ry 342 (373)
+.+.|
T Consensus 226 ~~~~~ 230 (251)
T PRK10258 226 LQLAW 230 (251)
T ss_pred HHHhc
Confidence 66665
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=3.2e-09 Score=97.98 Aligned_cols=222 Identities=13% Similarity=0.204 Sum_probs=129.9
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccC
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVP 140 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvp 140 (373)
..+.+|.|+|||.|.-|-++. +++. .-++.--|-....-..--..+| .--|.-|.-
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~--------~RwP--------------~A~i~GiDsS~~Mla~Aa~rlp--~~~f~~aDl 84 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLA--------RRWP--------------DAVITGIDSSPAMLAKAAQRLP--DATFEEADL 84 (257)
T ss_pred cccceeeecCCCCCHHHHHHH--------HhCC--------------CCeEeeccCCHHHHHHHHHhCC--CCceecccH
Confidence 457999999999999999884 3322 1133333322211111111111 112333333
Q ss_pred cccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG 220 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 220 (373)
...-|+...|++||+++||||..-|. .|..=-.+|.||
T Consensus 85 ----~~w~p~~~~dllfaNAvlqWlpdH~~--------------------------------------ll~rL~~~L~Pg 122 (257)
T COG4106 85 ----RTWKPEQPTDLLFANAVLQWLPDHPE--------------------------------------LLPRLVSQLAPG 122 (257)
T ss_pred ----hhcCCCCccchhhhhhhhhhccccHH--------------------------------------HHHHHHHhhCCC
Confidence 45668999999999999999876653 334444789999
Q ss_pred CeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCc-ccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 221 GLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNI-PLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 221 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~-P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
|.|.+.|++--++- -+.++.+. ++++ --+.++..+.+ ----+|+.-|-+++...+ =+|+--++.
T Consensus 123 g~LAVQmPdN~dep---------sH~~mr~~----A~~~-p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~ 187 (257)
T COG4106 123 GVLAVQMPDNLDEP---------SHRLMRET----ADEA-PFAQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTT 187 (257)
T ss_pred ceEEEECCCccCch---------hHHHHHHH----HhcC-chhhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeee
Confidence 99999998744331 12333322 2222 11111111110 012357777778887765 344433322
Q ss_pred cCCCCCCCCCCHHHHHHhHHH-hhhhHHHhhhChHHHHHHHHHHHHHHHhhccccccccCC----CeEEEEEEEEec
Q 017363 300 PDPPLMRLKPSPESVTSQIRA-VFEGVVKEHFGYDLVDKIFNFFTAKFAENFIFGELIKDH----NNVNLFVLLKRV 371 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~iRa-~~e~~l~~h~g~~i~delf~ry~~~~~~~~~~~~~~~~~----~~~~~~~~l~r~ 371 (373)
-.+.. .+.+.+..|+|+ +..|.+. .++++-...|.++|..++.+++... .+. .+--+|||-+|+
T Consensus 188 Y~h~l----~~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aYP~~---~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 188 YYHQL----PGADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAYPPR---ADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred ccccC----CCccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhCCCc---cCCcEEeecceEEEEEecC
Confidence 11211 135679999999 6668887 7888888999999999997754321 122 245567776664
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.92 E-value=3.6e-09 Score=98.50 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=95.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-CC---CCccceeec
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-MP---PSRKYFAFG 138 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-l~---~~~~~f~~g 138 (373)
.-+|+|+|||+|..+..+.+.+ .+..+|+-.|+..+-. ...+. +. ..+--++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~---------------------~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~v~~~~~ 103 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV---------------------GPEGHVIGLDFSENML-SVGRQKVKDAGLHNVELVHG 103 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh---------------------CCCCEEEEEECCHHHH-HHHHHHHHhcCCCceEEEEe
Confidence 4699999999999888763322 1223678888754322 11111 11 111123333
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
. +..-.+|++++|+++++.++||++. +..+|+.-.+-|+
T Consensus 104 d---~~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk 142 (231)
T TIGR02752 104 N---AMELPFDDNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVK 142 (231)
T ss_pred c---hhcCCCCCCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcC
Confidence 3 3333468899999999999999752 3357777788999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEE
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDK 298 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~ 298 (373)
|||++++.-.+.++....... ....+..+.-.+..+...+....... ...-..+|+.+|+++.+++.| |++.+++.
T Consensus 143 ~gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~ 218 (231)
T TIGR02752 143 PGGKVVCLETSQPTIPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWL--QESTRDFPGMDELAEMFQEAG-FKDVEVKS 218 (231)
T ss_pred cCeEEEEEECCCCCChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHcC-CCeeEEEE
Confidence 999999877665443211000 00000111111111111111000000 011236789999999999999 98777765
Q ss_pred e
Q 017363 299 L 299 (373)
Q Consensus 299 ~ 299 (373)
+
T Consensus 219 ~ 219 (231)
T TIGR02752 219 Y 219 (231)
T ss_pred c
Confidence 4
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=98.91 E-value=7.7e-08 Score=95.59 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=90.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhh---HhhcCCC-Cccceee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNT---LFQTMPP-SRKYFAF 137 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~---lf~~l~~-~~~~f~~ 137 (373)
..-+|+|+|||+|.++..+.... ..+|+--|+..+.-.. +.+.-.. .+-.|..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-----------------------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-----------------------GANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-----------------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 45789999999999998774321 0144444543322111 1111010 1123443
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+. +.+.-||++++|+|+|..++|++. |...+|+.-.+-|
T Consensus 175 ~D---~~~~~~~~~~FD~V~s~~~~~h~~--------------------------------------d~~~~l~e~~rvL 213 (340)
T PLN02244 175 AD---ALNQPFEDGQFDLVWSMESGEHMP--------------------------------------DKRKFVQELARVA 213 (340)
T ss_pred cC---cccCCCCCCCccEEEECCchhccC--------------------------------------CHHHHHHHHHHHc
Confidence 33 234447889999999999998864 3335777778899
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
+|||+|++...+..+..+...... ..-...+..+... +.+| ...+.+|+..++++.| |+..+.+
T Consensus 214 kpGG~lvi~~~~~~~~~~~~~~l~----~~~~~~~~~i~~~----------~~~p-~~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 214 APGGRIIIVTWCHRDLEPGETSLK----PDEQKLLDKICAA----------YYLP-AWCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred CCCcEEEEEEecccccccccccCC----HHHHHHHHHHHhh----------ccCC-CCCCHHHHHHHHHHCC-CCeeEee
Confidence 999999998876544322111000 0011112222111 1223 2348999999999999 8776554
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.91 E-value=3.1e-08 Score=94.92 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=93.3
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC------CCccce
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP------PSRKYF 135 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~------~~~~~f 135 (373)
...+|+|+|||+|..+..+...+ .+.-+|+--|+..+--...-+..+ ..+--|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~---------------------~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV---------------------GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh---------------------CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEE
Confidence 35799999999999876552221 112256666665433222111111 011124
Q ss_pred eeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHh
Q 017363 136 AFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAH 215 (373)
Q Consensus 136 ~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 215 (373)
..+.. ..--+|++|+|++++++++||+. |...+|+.-++
T Consensus 132 ~~~d~---~~lp~~~~sfD~V~~~~~l~~~~--------------------------------------d~~~~l~ei~r 170 (261)
T PLN02233 132 IEGDA---TDLPFDDCYFDAITMGYGLRNVV--------------------------------------DRLKAMQEMYR 170 (261)
T ss_pred EEccc---ccCCCCCCCEeEEEEecccccCC--------------------------------------CHHHHHHHHHH
Confidence 44433 23336889999999999999965 33467888889
Q ss_pred hhccCCeEEEEeccCCCCCCccCCCchhHHHHH-HHHHHHHh-hcCCCChhhhcccCcc---cccCCHHHHHHHHHhcCc
Q 017363 216 ELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFL-GSCLIDMT-TKGLIDEEKVDSFNIP---LYFPTAEELKAIIERNGC 290 (373)
Q Consensus 216 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l-~~al~~mv-~eGli~~e~~d~f~~P---~y~ps~eE~~~~ie~~gs 290 (373)
-|||||++++.-+++++.... ..+++.+ ...+.-+. .-|. .+.+. .++ -.+++.+|+.+.+++.|
T Consensus 171 vLkpGG~l~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~y~--~l~~s~~~f~s~~el~~ll~~aG- 240 (261)
T PLN02233 171 VLKPGSRVSILDFNKSTQPFT-----TSMQEWMIDNVVVPVATGYGL--AKEYE--YLKSSINEYLTGEELEKLALEAG- 240 (261)
T ss_pred HcCcCcEEEEEECCCCCcHHH-----HHHHHHHHhhhhhHHHHHhCC--hHHHH--HHHHHHHhcCCHHHHHHHHHHCC-
Confidence 999999999998887653210 1111111 11111110 0122 11110 000 13789999999999999
Q ss_pred eEEeEEE
Q 017363 291 FRIERMD 297 (373)
Q Consensus 291 F~I~~le 297 (373)
|++.+..
T Consensus 241 F~~~~~~ 247 (261)
T PLN02233 241 FSSAKHY 247 (261)
T ss_pred CCEEEEE
Confidence 8765443
No 11
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.89 E-value=1.8e-07 Score=96.64 Aligned_cols=185 Identities=15% Similarity=0.253 Sum_probs=113.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-CCC--Cccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-MPP--SRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-l~~--~~~~f~~gv 139 (373)
..+|+|+|||+|..++.+.. .. ..+|+--|+...- -...+. ... .+--|..
T Consensus 267 ~~~vLDiGcG~G~~~~~la~--------~~---------------~~~v~gvDiS~~~-l~~A~~~~~~~~~~v~~~~-- 320 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAE--------NF---------------DVHVVGIDLSVNM-ISFALERAIGRKCSVEFEV-- 320 (475)
T ss_pred CCEEEEEeccCCHHHHHHHH--------hc---------------CCEEEEEECCHHH-HHHHHHHhhcCCCceEEEE--
Confidence 46899999999987765522 11 1257777775321 111111 111 1112333
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
+.+....+|++++|+++|..+++|+.. ...+|+.-++-|+|
T Consensus 321 -~d~~~~~~~~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~Lkp 361 (475)
T PLN02336 321 -ADCTKKTYPDNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKP 361 (475)
T ss_pred -cCcccCCCCCCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCC
Confidence 344556678899999999999999753 23577778899999
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
||++++....+....+. ..+...+. ..|. ..++.+++.+++++.| |++...+..
T Consensus 362 gG~l~i~~~~~~~~~~~---------~~~~~~~~---~~g~-------------~~~~~~~~~~~l~~aG-F~~i~~~d~ 415 (475)
T PLN02336 362 GGKVLISDYCRSPGTPS---------PEFAEYIK---QRGY-------------DLHDVQAYGQMLKDAG-FDDVIAEDR 415 (475)
T ss_pred CeEEEEEEeccCCCCCc---------HHHHHHHH---hcCC-------------CCCCHHHHHHHHHHCC-Ceeeeeecc
Confidence 99999998876543321 01111111 2232 5679999999999999 987755522
Q ss_pred cCCCCCCCCCCHHHHHHhHHHhhhhH------HHhhhChHHHHHHHHHHHHHHHhh
Q 017363 300 PDPPLMRLKPSPESVTSQIRAVFEGV------VKEHFGYDLVDKIFNFFTAKFAEN 349 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~iRa~~e~~------l~~h~g~~i~delf~ry~~~~~~~ 349 (373)
...+..+++.+.+.+ +...+|++..+.+...+...+...
T Consensus 416 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 416 -----------TDQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred -----------hHHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 123444443333332 223567887777777777766543
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.86 E-value=1.2e-08 Score=100.78 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=92.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc----CCCC-ccceee
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT----MPPS-RKYFAF 137 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~----l~~~-~~~f~~ 137 (373)
.-+|+|+|||+|..++.+.. . .+. +|+--|.. ..+-.-++. .... +-.|..
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~--------------g~~-~V~GiD~S-~~~l~q~~a~~~~~~~~~~i~~~~ 178 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------A--------------GAK-LVVGIDPS-QLFLCQFEAVRKLLGNDQRAHLLP 178 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c--------------CCC-EEEEEcCC-HHHHHHHHHHHHhcCCCCCeEEEe
Confidence 36999999999999886621 1 011 47777743 333222221 1111 222332
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+++. .+-.++++|+++|..+|||+. |...+|+.-++-|
T Consensus 179 ---~d~e-~lp~~~~FD~V~s~~vl~H~~--------------------------------------dp~~~L~~l~~~L 216 (322)
T PRK15068 179 ---LGIE-QLPALKAFDTVFSMGVLYHRR--------------------------------------SPLDHLKQLKDQL 216 (322)
T ss_pred ---CCHH-HCCCcCCcCEEEECChhhccC--------------------------------------CHHHHHHHHHHhc
Confidence 2332 222278899999999999854 3346788888999
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
+|||+|++..+..+..... .+...+.+..+...++.||.+++..++++.| |++.++.
T Consensus 217 kpGG~lvl~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~ 273 (322)
T PRK15068 217 VPGGELVLETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIV 273 (322)
T ss_pred CCCcEEEEEEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEE
Confidence 9999999987654422110 0111222333444457799999999999999 9877776
Q ss_pred Eec
Q 017363 298 KLP 300 (373)
Q Consensus 298 ~~~ 300 (373)
...
T Consensus 274 ~~~ 276 (322)
T PRK15068 274 DVS 276 (322)
T ss_pred eCC
Confidence 443
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.86 E-value=2e-07 Score=89.33 Aligned_cols=190 Identities=13% Similarity=0.145 Sum_probs=111.2
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-CCC-Cccceeecc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-MPP-SRKYFAFGV 139 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-l~~-~~~~f~~gv 139 (373)
...+|+|+|||+|..+..+.. .+ ..+|+..|+..+-. ...+. .+. .+-.|.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~~---------------~~~v~giD~s~~~~-~~a~~~~~~~~~i~~~--- 104 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------KY---------------GAHVHGVDICEKMV-NIAKLRNSDKNKIEFE--- 104 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------hc---------------CCEEEEEECCHHHH-HHHHHHcCcCCceEEE---
Confidence 357899999999998876631 11 12677777754332 22222 111 112233
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
.+++...-+|++++|+++|..++|+++. .|...+|+.-++-|+|
T Consensus 105 ~~D~~~~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkP 148 (263)
T PTZ00098 105 ANDILKKDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKP 148 (263)
T ss_pred ECCcccCCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCC
Confidence 3445555678999999999888766431 1445788888899999
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
||+|+++-....+.... -+.+...+. ..+ ...++.+++.++++..| |++...+-.
T Consensus 149 GG~lvi~d~~~~~~~~~--------~~~~~~~~~---~~~-------------~~~~~~~~~~~~l~~aG-F~~v~~~d~ 203 (263)
T PTZ00098 149 NGILLITDYCADKIENW--------DEEFKAYIK---KRK-------------YTLIPIQEYGDLIKSCN-FQNVVAKDI 203 (263)
T ss_pred CcEEEEEEeccccccCc--------HHHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-CCeeeEEeC
Confidence 99999987765432110 111111111 111 14579999999999999 887665522
Q ss_pred cCCCCCCCCCCHHHHH---HhHHHhhhhHHHhhhChHHHHHHHHHHHHHHH
Q 017363 300 PDPPLMRLKPSPESVT---SQIRAVFEGVVKEHFGYDLVDKIFNFFTAKFA 347 (373)
Q Consensus 300 ~~~~~~~~~~~~~~~~---~~iRa~~e~~l~~h~g~~i~delf~ry~~~~~ 347 (373)
. ..+ ...+. ..+++- +.-+...+|++..+.+-.-+...+.
T Consensus 204 ~--~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 204 S--DYW-----LELLQVELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred c--HHH-----HHHHHHHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1 111 11122 222221 2333446788887777777766654
No 14
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.86 E-value=2.8e-08 Score=93.46 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=93.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhh-cCCC---Cccceeec
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQ-TMPP---SRKYFAFG 138 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~-~l~~---~~~~f~~g 138 (373)
..+|+|+|||+|..+..+.+.+ +.|..+++--|+..+- -...+ .+.. ..+ +.-
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~--------------------~~p~~~v~gvD~s~~m-l~~a~~~~~~~~~~~~--v~~ 110 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNI--------------------NQPNVKIIGIDNSQPM-VERCRQHIAAYHSEIP--VEI 110 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhc--------------------CCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCC--eEE
Confidence 3589999999999888774332 1233477777774322 11221 1111 111 112
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
+-+++..--+ .+.|+++|++++||++. .|...+|+.-.+-|+
T Consensus 111 ~~~d~~~~~~--~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 111 LCNDIRHVEI--KNASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLN 152 (239)
T ss_pred EECChhhCCC--CCCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcC
Confidence 2334443323 35789999999999752 133468888899999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhh-cCCCChhhh----cccCcccccCCHHHHHHHHHhcCceE
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTT-KGLIDEEKV----DSFNIPLYFPTAEELKAIIERNGCFR 292 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~----d~f~~P~y~ps~eE~~~~ie~~gsF~ 292 (373)
|||++++.-..+.+... ..+.+...+..+.. .|. +++++ +.+.-.....|++|+++.+++.| |.
T Consensus 153 pgG~l~i~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 153 PNGVLVLSEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CCeEEEEeecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 99999998655443322 12233333333333 344 44333 23333445579999999999999 75
No 15
>PRK08317 hypothetical protein; Provisional
Probab=98.84 E-value=6.8e-07 Score=82.33 Aligned_cols=218 Identities=16% Similarity=0.063 Sum_probs=117.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC--CCCccceeecc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM--PPSRKYFAFGV 139 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l--~~~~~~f~~gv 139 (373)
...+|+|+|||+|..+..+.+.. . |.-+++--|+...-....-+.. .....-|..+.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------~-------------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------G-------------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------C-------------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc
Confidence 35799999999999887664322 0 1125666666433211111110 01112233332
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
+...-++++++|++++..++||+.+ +..+|+.-.+-|+|
T Consensus 78 ---~~~~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~ 116 (241)
T PRK08317 78 ---ADGLPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRP 116 (241)
T ss_pred ---cccCCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcC
Confidence 2233467889999999999999753 33577788889999
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
||++++....-+.... .......+..+...|.. .+. -..+..++...+++.| |+...++.+
T Consensus 117 gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~l~~aG-f~~~~~~~~ 177 (241)
T PRK08317 117 GGRVVVLDTDWDTLVW--HSGDRALMRKILNFWSD---HFA-------------DPWLGRRLPGLFREAG-LTDIEVEPY 177 (241)
T ss_pred CcEEEEEecCCCceee--cCCChHHHHHHHHHHHh---cCC-------------CCcHHHHHHHHHHHcC-CCceeEEEE
Confidence 9999988754221110 00111122222222321 111 1124568999999999 987777655
Q ss_pred cCCC-CCCCCCCHHHHHHhHHHhhhhHH-HhhhChHHHHHHHHHHHHHHHhhccccccccCCCeEEEEEEEEec
Q 017363 300 PDPP-LMRLKPSPESVTSQIRAVFEGVV-KEHFGYDLVDKIFNFFTAKFAENFIFGELIKDHNNVNLFVLLKRV 371 (373)
Q Consensus 300 ~~~~-~~~~~~~~~~~~~~iRa~~e~~l-~~h~g~~i~delf~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 371 (373)
.... .+ .+......+......+. ...+.++-+++++..+++..... .+ +-++.++++..||
T Consensus 178 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~~~~~~~~~~k 240 (241)
T PRK08317 178 TLIETDL----KEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARAG--EF-----FFSVTGFLVVGRK 240 (241)
T ss_pred EEeccCc----chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC--CE-----EEEEEEEEEEEeC
Confidence 3211 11 12222223332222222 22345667788888777654321 11 2356777777666
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.84 E-value=3.4e-09 Score=91.98 Aligned_cols=138 Identities=22% Similarity=0.277 Sum_probs=88.3
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccC
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVP 140 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvp 140 (373)
....+|+|+|||+|.++..+ .+. .. ++...|.-...-.. ...++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~--------------~~--~~~g~D~~~~~~~~------------~~~~~ 64 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR--------------GF--EVTGVDISPQMIEK------------RNVVF 64 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT--------------TS--EEEEEESSHHHHHH------------TTSEE
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh--------------CC--EEEEEECCHHHHhh------------hhhhh
Confidence 35679999999999876655 111 11 67777775322111 01111
Q ss_pred cccc--cCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 141 GSFH--GRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 141 gSFy--~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
..|. ...+|++++|+|+|+.+|||+. |+..+|+.-.+-|+
T Consensus 65 ~~~~~~~~~~~~~~fD~i~~~~~l~~~~--------------------------------------d~~~~l~~l~~~Lk 106 (161)
T PF13489_consen 65 DNFDAQDPPFPDGSFDLIICNDVLEHLP--------------------------------------DPEEFLKELSRLLK 106 (161)
T ss_dssp EEEECHTHHCHSSSEEEEEEESSGGGSS--------------------------------------HHHHHHHHHHHCEE
T ss_pred hhhhhhhhhccccchhhHhhHHHHhhcc--------------------------------------cHHHHHHHHHHhcC
Confidence 1221 3345889999999999999977 33468888889999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeE
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIER 295 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~ 295 (373)
|||++++..+.+....+ .. +... ....... --..+.+.++++.++++.| |+|..
T Consensus 107 pgG~l~~~~~~~~~~~~----------~~----~~~~---~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 107 PGGYLVISDPNRDDPSP----------RS----FLKW---RYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEEEEEBTTSHHH----------HH----HHHC---CGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEEEcCCcchhh----------hH----HHhc---CCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 99999999998753100 01 1111 1111100 1115669999999999999 98753
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.74 E-value=4.2e-07 Score=89.51 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=63.8
Q ss_pred CCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEE
Q 017363 146 RLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 146 rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 225 (373)
.+-+..++|+|+|+.+|||+.. ...+|+.-++-|+|||.|++
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence 4444568999999999999642 23578888899999999999
Q ss_pred EeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 226 VLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 226 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
.....+..... .+...+.+..+.-.++.||.+++..++++.| |+..++...
T Consensus 224 etl~i~g~~~~----------------------~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 224 ETLVIDGDLNT----------------------VLVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred EEEEecCcccc----------------------ccCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 87653321110 0111222333444567899999999999999 986665533
No 18
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.70 E-value=5.9e-08 Score=91.77 Aligned_cols=168 Identities=21% Similarity=0.244 Sum_probs=104.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCc---cceeec
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSR---KYFAFG 138 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~---~~f~~g 138 (373)
+..+|+|+|||||--|+.+...+ . +-+|..-|...+..+.-=+-+.... -.|+.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~--------g--------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV--------G--------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc--------C--------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 46999999999999999884333 1 2378888887766555444443321 224554
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
. ..+--||++|+|++.+++.|||+.+.+. .|+--++=||
T Consensus 109 d---Ae~LPf~D~sFD~vt~~fglrnv~d~~~--------------------------------------aL~E~~RVlK 147 (238)
T COG2226 109 D---AENLPFPDNSFDAVTISFGLRNVTDIDK--------------------------------------ALKEMYRVLK 147 (238)
T ss_pred c---hhhCCCCCCccCEEEeeehhhcCCCHHH--------------------------------------HHHHHHHhhc
Confidence 4 4666789999999999999999887664 4555568999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeE
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIER 295 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~ 295 (373)
|||++++.=+++++..+.......+.+..+---+-.++..+ .++..--....--+|+.+++.+.+++.| |+...
T Consensus 148 pgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~--~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKD--AEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred CCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecC--hHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 99999998888775533211101111110111111111100 0111111122336799999999999999 87544
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=2.5e-07 Score=88.00 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=90.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC----Cccceee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP----SRKYFAF 137 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~----~~~~f~~ 137 (373)
+..+|+|+|||+|..|..+... ..+|+..|+...--...=+.+.. .+-.|+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~------------------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~ 99 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL------------------------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH 99 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc------------------------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE
Confidence 3579999999999988777321 01567777653221111111111 1112333
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+....+ .-++++++|++++..+|||+...+ .+|+.-++-|
T Consensus 100 ~d~~~l--~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~L 139 (255)
T PRK11036 100 CAAQDI--AQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVL 139 (255)
T ss_pred cCHHHH--hhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHc
Confidence 332111 014678999999999999986432 3566667889
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHH-HHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYG-FLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERM 296 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~-~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~l 296 (373)
+|||++++.+...... .+. .+..-+ +.+..|+...+.. .-.|-+..+++++.+++++.| |+++..
T Consensus 140 kpgG~l~i~~~n~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~ 205 (255)
T PRK11036 140 RPGGALSLMFYNANGL----------LMHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGK 205 (255)
T ss_pred CCCeEEEEEEECccHH----------HHHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeee
Confidence 9999999887664321 111 111001 1122233221111 123556779999999999999 988754
Q ss_pred E
Q 017363 297 D 297 (373)
Q Consensus 297 e 297 (373)
.
T Consensus 206 ~ 206 (255)
T PRK11036 206 T 206 (255)
T ss_pred e
Confidence 4
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.65 E-value=2.5e-07 Score=87.70 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=89.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-CC---CC-cccee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-MP---PS-RKYFA 136 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-l~---~~-~~~f~ 136 (373)
...+|+|+|||+|.+++.+...+ ..|..+++.-|....- -...+. +. .. +--|.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~--------------------~~~~~~v~gvD~S~~m-l~~A~~~~~~~~~~~~v~~~ 114 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI--------------------HHDNCKIIAIDNSPAM-IERCRRHIDAYKAPTPVDVI 114 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc--------------------CCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCeEEE
Confidence 34689999999999887763221 0123366777764322 212211 11 11 11122
Q ss_pred eccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 137 FGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 137 ~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
.+++.+- |....|+++++.++||++. + +...+|+.-++-
T Consensus 115 ---~~d~~~~--~~~~~D~vv~~~~l~~l~~-~-----------------------------------~~~~~l~~i~~~ 153 (247)
T PRK15451 115 ---EGDIRDI--AIENASMVVLNFTLQFLEP-S-----------------------------------ERQALLDKIYQG 153 (247)
T ss_pred ---eCChhhC--CCCCCCEEehhhHHHhCCH-H-----------------------------------HHHHHHHHHHHh
Confidence 2333332 3345899999999999862 1 223677888899
Q ss_pred hccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhccc----CcccccCCHHHHHHHHHhcCceE
Q 017363 217 LVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSF----NIPLYFPTAEELKAIIERNGCFR 292 (373)
Q Consensus 217 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f----~~P~y~ps~eE~~~~ie~~gsF~ 292 (373)
|+|||.|++.-.-..+... ..+.+...|..+....-.+++++..+ .--...-|+++..+++++.| |+
T Consensus 154 LkpGG~l~l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 154 LNPGGALVLSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred cCCCCEEEEEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 9999999997533322211 12334444555544444455444332 11112247888888888888 63
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.60 E-value=6.8e-07 Score=81.99 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=79.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC-C--CCccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM-P--PSRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l-~--~~~~~f~~gv 139 (373)
..+|+|+|||+|.+++.+.+. -.+|..-|+..+- -...+.. . .... +..+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~------------------------g~~V~gvD~S~~~-i~~a~~~~~~~~~~~--v~~~ 83 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN------------------------GFDVTAWDKNPMS-IANLERIKAAENLDN--LHTA 83 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC------------------------CCEEEEEeCCHHH-HHHHHHHHHHcCCCc--ceEE
Confidence 468999999999999887421 0145555664321 1111110 0 0011 1111
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
.+++.. +-+++++|+++|+.++||+.. .|...+++.-++-|+|
T Consensus 84 ~~d~~~-~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~Lkp 126 (197)
T PRK11207 84 VVDLNN-LTFDGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKP 126 (197)
T ss_pred ecChhh-CCcCCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCC
Confidence 122222 122467999999999999752 1445788888899999
Q ss_pred CCeEEE-EeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 220 GGLIVF-VLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 220 GG~lvl-~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
||++++ ..+..++. +. ..| |-+..+.+|+.+.++ | |++.+.+
T Consensus 127 gG~~~~~~~~~~~~~-~~--------------------~~~------------~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 127 GGYNLIVAAMDTADY-PC--------------------TVG------------FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred CcEEEEEEEecCCCC-CC--------------------CCC------------CCCccCHHHHHHHhC--C-CeEEEee
Confidence 999655 44433221 10 011 226678999999887 5 8877664
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.59 E-value=5.1e-08 Score=76.75 Aligned_cols=95 Identities=25% Similarity=0.262 Sum_probs=61.8
Q ss_pred eeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccC
Q 017363 67 ADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGR 146 (373)
Q Consensus 67 aD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~r 146 (373)
+|+|||+|.++..+.+. +..+++-.|....--...-+.......-|..+ ++..-
T Consensus 1 LdiG~G~G~~~~~l~~~-----------------------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~---d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----------------------GGASVTGIDISEEMLEQARKRLKNEGVSFRQG---DAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----------------------TTCEEEEEES-HHHHHHHHHHTTTSTEEEEES---BTTSS
T ss_pred CEecCcCCHHHHHHHhc-----------------------cCCEEEEEeCCHHHHHHHHhcccccCchheee---hHHhC
Confidence 69999999999888332 01267777765432222222222222224443 45566
Q ss_pred CCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEE
Q 017363 147 LFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 147 lfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 225 (373)
-||++|+|+++++.++||+. |...+|+.-++-|||||++++
T Consensus 55 ~~~~~sfD~v~~~~~~~~~~--------------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHLE--------------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGSS--------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeecc--------------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999982 455788889999999999985
No 23
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.57 E-value=3e-08 Score=93.59 Aligned_cols=165 Identities=22% Similarity=0.294 Sum_probs=66.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC---CCccceeec
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP---PSRKYFAFG 138 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~g 138 (373)
...+|+|+|||+|..|+.+...+ .+..+|+--|...+--..-=+.+. ..+--|+.|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~---------------------~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV---------------------GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS---------------------S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred CCCEEEEeCCChHHHHHHHHHHC---------------------CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 45799999999999988772211 233477888876543222111111 112336666
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
+. ..--||++|+|.+++++.||-+.+ ..+.|+.-.+=||
T Consensus 106 da---~~lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLk 144 (233)
T PF01209_consen 106 DA---EDLPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLK 144 (233)
T ss_dssp BT---TB--S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEE
T ss_pred CH---HHhcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcC
Confidence 55 344479999999999999998653 3356677778999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhccc----CcccccCCHHHHHHHHHhcCceEEe
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSF----NIPLYFPTAEELKAIIERNGCFRIE 294 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f----~~P~y~ps~eE~~~~ie~~gsF~I~ 294 (373)
|||++++.=+++++.... ..+|...-..+.=+.. .+++.+ .+.+ ..-.-+|+.+|+.+.+++.| |+..
T Consensus 145 PGG~l~ile~~~p~~~~~-----~~~~~~y~~~ilP~~g-~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v 216 (233)
T PF01209_consen 145 PGGRLVILEFSKPRNPLL-----RALYKFYFKYILPLIG-RLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNV 216 (233)
T ss_dssp EEEEEEEEEEEB-SSHHH-----HHHHHH---------------------------------------------------
T ss_pred CCeEEEEeeccCCCCchh-----hceeeeeecccccccc-cccccc-cccccccccccccccccccccccccccc-cccc
Confidence 999999988888754221 1122221111111111 222222 1111 11224689999999999999 8744
Q ss_pred EE
Q 017363 295 RM 296 (373)
Q Consensus 295 ~l 296 (373)
+.
T Consensus 217 ~~ 218 (233)
T PF01209_consen 217 EY 218 (233)
T ss_dssp --
T ss_pred cc
Confidence 33
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.56 E-value=1e-06 Score=81.66 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 150 KSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 150 ~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
++++|+++|..++||+. |+..+|+.-++-|+|||++++.-..
T Consensus 65 ~~~fD~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 65 PDTYDLVFGFEVIHHIK--------------------------------------DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCCEeehHHHHHhCC--------------------------------------CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 35899999999999964 3447888888999999999987654
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 230 LPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
.+..... + .-..+.|.++.+|+...+++.| |++...+.+
T Consensus 107 ~~~~~~~----------------------~--------~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 107 ANLLSAI----------------------E--------HEETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred cccCccc----------------------c--------ccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 3211000 0 0012346899999999999999 998777655
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.56 E-value=5.4e-07 Score=83.41 Aligned_cols=167 Identities=23% Similarity=0.271 Sum_probs=93.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC----Cccceeec
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP----SRKYFAFG 138 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~----~~~~f~~g 138 (373)
..+|+|+|||+|..+..+.... ++..+++..|+..+-....=+.+.. .+.-|..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~---------------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~- 109 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV---------------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ- 109 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc---------------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe-
Confidence 4799999999999888763322 0123677888754322211111111 1112322
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
+++.+..++++++|+++++.++|++++. ..+|+...+-|+
T Consensus 110 --~d~~~~~~~~~~~D~I~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~ 149 (239)
T PRK00216 110 --GDAEALPFPDNSFDAVTIAFGLRNVPDI--------------------------------------DKALREMYRVLK 149 (239)
T ss_pred --cccccCCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHhcc
Confidence 3344445677899999999999987643 256777788999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHHHH-HH---HHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEe
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGS-CL---IDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIE 294 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~-al---~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~ 294 (373)
|||++++.-...++... ....++.... .+ ..+........+.+. ..-..+++.+++..++++.| |++.
T Consensus 150 ~gG~li~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~ 221 (239)
T PRK00216 150 PGGRLVILEFSKPTNPP-----LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERV 221 (239)
T ss_pred CCcEEEEEEecCCCchH-----HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Ccee
Confidence 99999887665443211 0111111100 00 111111110000000 00024579999999999999 9877
Q ss_pred EEEEe
Q 017363 295 RMDKL 299 (373)
Q Consensus 295 ~le~~ 299 (373)
+.+.+
T Consensus 222 ~~~~~ 226 (239)
T PRK00216 222 RYRNL 226 (239)
T ss_pred eeeee
Confidence 76654
No 26
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.54 E-value=6.3e-06 Score=83.37 Aligned_cols=145 Identities=12% Similarity=0.204 Sum_probs=88.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
..+|+|+|||+|..++.+.+. + ..+|+--|+..+-....=+......--+..+ .
T Consensus 168 g~rVLDIGcG~G~~a~~la~~--------~---------------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~---D 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH--------Y---------------GVSVVGVTISAEQQKLAQERCAGLPVEIRLQ---D 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH--------C---------------CCEEEEEeCCHHHHHHHHHHhccCeEEEEEC---c
Confidence 469999999999988766321 1 1145555664322221111111111112222 2
Q ss_pred cccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCe
Q 017363 143 FHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGL 222 (373)
Q Consensus 143 Fy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 222 (373)
+ ..+ ++++|.++|...++|+.. +++..+|+.-.+-|+|||+
T Consensus 222 ~-~~l--~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 222 Y-RDL--NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred h-hhc--CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcE
Confidence 1 222 478999999999988531 1445688888899999999
Q ss_pred EEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCccc-ccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 223 IVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPL-YFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 223 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~-y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
+++...+.+...... ..-.+.+.+|- +.|+.+++....+ .| |+|..++.+
T Consensus 263 lvl~~i~~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~ 313 (383)
T PRK11705 263 FLLHTIGSNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNF 313 (383)
T ss_pred EEEEEccCCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecC
Confidence 999988766432110 01123344553 6899999999877 35 988877744
No 27
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.54 E-value=1.9e-06 Score=78.85 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=92.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC-CCccceeeccC
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP-PSRKYFAFGVP 140 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~-~~~~~f~~gvp 140 (373)
...+|+|+|||+|..+..+.... +...+++.-|....-....=+.++ ..+--|..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~---------------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~--- 94 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA---------------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ--- 94 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc---------------------CCCceEEEEECCHHHHHHHHHHhccCCCceEEe---
Confidence 45799999999999888763222 011356777764221111111111 01112222
Q ss_pred cccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG 220 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 220 (373)
+++.+..++++++|+++++..+|+... ...+|+...+.|+||
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPG 136 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCC
Confidence 334454577889999999999998652 336788888999999
Q ss_pred CeEEEEeccCCCCCCccCCCchhHHHHHHHHHHH-Hh---hcCCCChhhhcccCc----ccccCCHHHHHHHHHhcCceE
Q 017363 221 GLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLID-MT---TKGLIDEEKVDSFNI----PLYFPTAEELKAIIERNGCFR 292 (373)
Q Consensus 221 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~-mv---~eGli~~e~~d~f~~----P~y~ps~eE~~~~ie~~gsF~ 292 (373)
|++++.-.......+ +..+.+.+.. |. ..+. .. ..+.+.. ...+++.+|++.++++.| |+
T Consensus 137 G~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~ 204 (223)
T TIGR01934 137 GRLVILEFSKPANAL---------LKKFYKFYLKNVLPSIGGLI-SK-NAEAYTYLPESIRAFPSQEELAAMLKEAG-FE 204 (223)
T ss_pred cEEEEEEecCCCchh---------hHHHHHHHHHHhhhhhhhhh-cC-CchhhHHHHHHHHhCCCHHHHHHHHHHcC-Cc
Confidence 999986654332211 1222222111 11 1111 10 0111110 113578999999999999 98
Q ss_pred EeEEEEe
Q 017363 293 IERMDKL 299 (373)
Q Consensus 293 I~~le~~ 299 (373)
+...+..
T Consensus 205 ~~~~~~~ 211 (223)
T TIGR01934 205 EVRYRSL 211 (223)
T ss_pred cceeeee
Confidence 7766643
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.52 E-value=9.6e-07 Score=87.82 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=88.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC-CCCccceeeccCc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM-PPSRKYFAFGVPG 141 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l-~~~~~~f~~gvpg 141 (373)
..+|+|+|||+|..++.+.+.. +..++...|+..+-.. ..+.. +..+--+ +.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~----------------------~~~~VtgVD~S~~mL~-~A~~k~~~~~i~~---i~g 167 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV----------------------DAKNVTILDQSPHQLA-KAKQKEPLKECKI---IEG 167 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC----------------------CCCEEEEEECCHHHHH-HHHHhhhccCCeE---Eec
Confidence 4799999999999887663221 1126777777543322 22221 1111123 333
Q ss_pred ccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 142 SFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 142 SFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
+....-+|++++|+++++.++|++... ...|+.-.+-|+|||
T Consensus 168 D~e~lp~~~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG 209 (340)
T PLN02490 168 DAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGG 209 (340)
T ss_pred cHHhCCCCCCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCc
Confidence 344444688999999999999985532 246777789999999
Q ss_pred eEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEEec
Q 017363 222 LIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDKLP 300 (373)
Q Consensus 222 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~~ 300 (373)
++++.-....+. | +..-+.+ .-..+++.+|+.+++++.| |+...++.+.
T Consensus 210 ~LvIi~~~~p~~-----------~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~ 258 (340)
T PLN02490 210 KACLIGPVHPTF-----------W--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIG 258 (340)
T ss_pred EEEEEEecCcch-----------h--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcC
Confidence 998763321110 0 0000000 0113579999999999999 9877766543
No 29
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.51 E-value=1.8e-07 Score=92.41 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=90.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC---CC-Cccceeec
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM---PP-SRKYFAFG 138 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l---~~-~~~~f~~g 138 (373)
..+|+|+|||+|..+..+.. . ..+|+--|.-..-....-+.. +. .+-.|..+
T Consensus 132 g~~ILDIGCG~G~~s~~La~--------~----------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~ 187 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--------M----------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT 187 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--------c----------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec
Confidence 46999999999998876521 0 125666666543222111111 00 11123333
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
++.+--++++++|++++..+|||+... ..||+.-++-||
T Consensus 188 ---dae~l~~~~~~FD~Vi~~~vLeHv~d~--------------------------------------~~~L~~l~r~Lk 226 (322)
T PLN02396 188 ---TAEKLADEGRKFDAVLSLEVIEHVANP--------------------------------------AEFCKSLSALTI 226 (322)
T ss_pred ---CHHHhhhccCCCCEEEEhhHHHhcCCH--------------------------------------HHHHHHHHHHcC
Confidence 233323567899999999999997643 368888889999
Q ss_pred cCCeEEEEeccCCCCCCccCCCchhHHHHH-HHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 219 PGGLIVFVLFSLPNGVPMIDSNGGKLYGFL-GSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 219 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l-~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
|||++++....+... .+....+ ..-+...+..|. -....+.+++|+..+++..| |++..+.
T Consensus 227 PGG~liist~nr~~~--------~~~~~i~~~eyi~~~lp~gt---------h~~~~f~tp~eL~~lL~~aG-f~i~~~~ 288 (322)
T PLN02396 227 PNGATVLSTINRTMR--------AYASTIVGAEYILRWLPKGT---------HQWSSFVTPEELSMILQRAS-VDVKEMA 288 (322)
T ss_pred CCcEEEEEECCcCHH--------HHHHhhhhHHHHHhcCCCCC---------cCccCCCCHHHHHHHHHHcC-CeEEEEe
Confidence 999999998765321 0000000 011111122221 01123679999999999999 9888776
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.49 E-value=4.9e-07 Score=74.12 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=64.5
Q ss_pred eEEeeecCCCCcccHHHHH--------------HHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC
Q 017363 64 FKLADFGCSVGPNTFIAVQ--------------NIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP 129 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~ 129 (373)
-+|+|+|||+|..++.+.+ ..++..+++..... ..+.++++..|+ ..++.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------~~~~i~~~~~d~-~~~~~------- 66 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--------LSDRITFVQGDA-EFDPD------- 66 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--------TTTTEEEEESCC-HGGTT-------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--------CCCCeEEEECcc-ccCcc-------
Confidence 5899999999999999976 56666666552221 234556666666 11111
Q ss_pred CCccceeeccCcccccCCCCCCcceEEEccC-cccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHH
Q 017363 130 PSRKYFAFGVPGSFHGRLFPKSSLHFANSSS-SLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEA 208 (373)
Q Consensus 130 ~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~-alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~ 208 (373)
....+|+++++. ++|++-.. .+...
T Consensus 67 -------------------~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~ 92 (112)
T PF12847_consen 67 -------------------FLEPFDLVICSGFTLHFLLPL-----------------------------------DERRR 92 (112)
T ss_dssp -------------------TSSCEEEEEECSGSGGGCCHH-----------------------------------HHHHH
T ss_pred -------------------cCCCCCEEEECCCccccccch-----------------------------------hHHHH
Confidence 113399999999 77754322 25567
Q ss_pred HHHHHHhhhccCCeEEEEe
Q 017363 209 FLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 209 FL~~Ra~EL~pGG~lvl~~ 227 (373)
+|+.-.+-|+|||+|++..
T Consensus 93 ~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 93 VLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEE
Confidence 8999999999999999864
No 31
>PRK06202 hypothetical protein; Provisional
Probab=98.46 E-value=4.5e-06 Score=78.11 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC-Cccceeecc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP-SRKYFAFGV 139 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~-~~~~f~~gv 139 (373)
.+..+|+|+|||+|.++..+.... ++ . .+..+++-.|+..+- -...+.... .+--+..+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~----~----------g~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~ 119 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RR----D----------GLRLEVTAIDPDPRA-VAFARANPRRPGVTFRQAV 119 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----Hh----C----------CCCcEEEEEcCCHHH-HHHHHhccccCCCeEEEEe
Confidence 346799999999999888663322 11 1 233478888886533 223333211 111233332
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
...+ -++++++|+++|+.+|||+... ++..+|+.-++-++
T Consensus 120 ~~~l---~~~~~~fD~V~~~~~lhh~~d~------------------------------------~~~~~l~~~~r~~~- 159 (232)
T PRK06202 120 SDEL---VAEGERFDVVTSNHFLHHLDDA------------------------------------EVVRLLADSAALAR- 159 (232)
T ss_pred cccc---cccCCCccEEEECCeeecCChH------------------------------------HHHHHHHHHHHhcC-
Confidence 2221 1267899999999999998631 22345655555555
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
|.+++.-+.++.. .+........-......+..+. ...-.-++|.+|+.+.+++ | |++...-
T Consensus 160 -~~~~i~dl~~~~~----------~~~~~~~~~~~~~~~~~~~~d~---~~s~~~~~~~~el~~ll~~-G-f~~~~~~ 221 (232)
T PRK06202 160 -RLVLHNDLIRSRL----------AYALFWAGTRLLSRSSFVHTDG---LLSVRRSYTPAELAALAPQ-G-WRVERQW 221 (232)
T ss_pred -eeEEEeccccCHH----------HHHHHHHHHHHhccCceeeccc---hHHHHhhcCHHHHHHHhhC-C-CeEEecc
Confidence 5666665555421 1111111101111111222211 1122357899999999998 7 9887654
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.46 E-value=2.2e-06 Score=82.05 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc----CCCCccceee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT----MPPSRKYFAF 137 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~----l~~~~~~f~~ 137 (373)
..-+|+|+|||+|..++.+.... . +.-+|+--|...+-.. ..+. ..-.+--|..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------g-------------~~~~v~gvD~s~~~l~-~A~~~~~~~g~~~v~~~~ 134 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------G-------------PTGKVIGVDMTPEMLA-KARANARKAGYTNVEFRL 134 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------C-------------CCCEEEEECCCHHHHH-HHHHHHHHcCCCCEEEEE
Confidence 34699999999998776552211 1 1125777776432211 1111 1101112333
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+.+..--+|++++|+++|+.++||.... ...|+.-.+-|
T Consensus 135 ---~d~~~l~~~~~~fD~Vi~~~v~~~~~d~--------------------------------------~~~l~~~~r~L 173 (272)
T PRK11873 135 ---GEIEALPVADNSVDVIISNCVINLSPDK--------------------------------------ERVFKEAFRVL 173 (272)
T ss_pred ---cchhhCCCCCCceeEEEEcCcccCCCCH--------------------------------------HHHHHHHHHHc
Confidence 3333334678899999999999995432 24556666889
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
+|||+|++.-.......+ +.+...+. +.. |.+ ....+.+|+..+++..| |....+.
T Consensus 174 kpGG~l~i~~~~~~~~~~----------~~~~~~~~-~~~-~~~-----------~~~~~~~e~~~~l~~aG-f~~v~i~ 229 (272)
T PRK11873 174 KPGGRFAISDVVLRGELP----------EEIRNDAE-LYA-GCV-----------AGALQEEEYLAMLAEAG-FVDITIQ 229 (272)
T ss_pred CCCcEEEEEEeeccCCCC----------HHHHHhHH-HHh-ccc-----------cCCCCHHHHHHHHHHCC-CCceEEE
Confidence 999999987554322111 11222111 111 211 13457899999999999 8766554
Q ss_pred E
Q 017363 298 K 298 (373)
Q Consensus 298 ~ 298 (373)
.
T Consensus 230 ~ 230 (272)
T PRK11873 230 P 230 (272)
T ss_pred e
Confidence 3
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.45 E-value=2.2e-05 Score=75.89 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=59.0
Q ss_pred hcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCccc-ccCCHHHHH
Q 017363 204 NDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPL-YFPTAEELK 282 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~-y~ps~eE~~ 282 (373)
+++..|++.-++-|+|||++++...+..+.... .+.-.+.+-+....+|- +.|+.+|+.
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~--------------------~~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH--------------------AERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH--------------------HCTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccch--------------------hhcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 367789999999999999999998876543210 00000001122233343 678999999
Q ss_pred HHHHhcCceEEeEEEEecCCCCCCCCCCHHHHHHhHHHhhhhHHH
Q 017363 283 AIIERNGCFRIERMDKLPDPPLMRLKPSPESVTSQIRAVFEGVVK 327 (373)
Q Consensus 283 ~~ie~~gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~~e~~l~ 327 (373)
..++..| |+|.+.+.+ +..++.++|+|.+.+.+
T Consensus 203 ~~~~~~~-l~v~~~~~~-----------~~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 203 RAAEDAG-LEVEDVENL-----------GRHYARTLRAWRENFDA 235 (273)
T ss_dssp HHHHHTT--EEEEEEE------------HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-EEEEEEEEc-----------CcCHHHHHHHHHHHHHH
Confidence 9888888 999887754 56788888888877775
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.44 E-value=3.5e-06 Score=77.18 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=79.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC---CCccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP---PSRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~gv 139 (373)
+.+|+|+|||+|.+++.+... -.+|+--|+..+--. ..+... .-+-.+..+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~------------------------g~~V~~iD~s~~~l~-~a~~~~~~~~~~v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA------------------------GYDVRAWDHNPASIA-SVLDMKARENLPLRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC------------------------CCeEEEEECCHHHHH-HHHHHHHHhCCCceeEecc
Confidence 469999999999999988421 015666666432111 111110 0011111111
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
. ...-+++++|+++|+.++||++. .++..+++.-++-|+|
T Consensus 86 ~----~~~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~Lkp 125 (195)
T TIGR00477 86 I----NAAALNEDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRP 125 (195)
T ss_pred c----hhccccCCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCC
Confidence 1 11122468999999999999752 1445788888899999
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
||++++...-..+..+ .|. .|-|..+++|+++.++ + |++.+.+
T Consensus 126 gG~lli~~~~~~~~~~----------------------~~~----------~~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 126 GGYNLIVAAMDTADYP----------------------CHM----------PFSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred CcEEEEEEecccCCCC----------------------CCC----------CcCccCCHHHHHHHhC--C-CeEEEee
Confidence 9996654432221111 010 1125678999999886 3 8877666
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.43 E-value=2.8e-06 Score=82.42 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=54.1
Q ss_pred CCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 150 KSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 150 ~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
++++|+++|+.+||++.. .++..+|+.-.+-|+|||++++....
T Consensus 182 ~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 678999999999999751 14557888889999999997775543
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcc-cccCCHHHHHHHHHhcCceEEeEEE
Q 017363 230 LPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIP-LYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P-~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
..+..+ ...| -+..+.+|+++.+.. |+|.+.+
T Consensus 226 ~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 226 DTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred ccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 222111 0112 356789999998863 8888774
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.39 E-value=4.8e-07 Score=73.06 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=49.2
Q ss_pred eeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhH---hhcCCCCccceeeccCccc
Q 017363 67 ADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTL---FQTMPPSRKYFAFGVPGSF 143 (373)
Q Consensus 67 aD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~l---f~~l~~~~~~f~~gvpgSF 143 (373)
+|+|||+|..+..+++.. |..+++..|....-.... +........-.........
T Consensus 1 LdiGcG~G~~~~~l~~~~----------------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 58 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL----------------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL 58 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-
T ss_pred CEeCccChHHHHHHHHhC----------------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh
Confidence 699999999999884433 245788888876443111 1111111112233332222
Q ss_pred ccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeE
Q 017363 144 HGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLI 223 (373)
Q Consensus 144 y~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 223 (373)
.... +++++|+|+++.+|||+. |+..+|+.-++-|+|||+|
T Consensus 59 ~~~~-~~~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 59 FDYD-PPESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --CC-C----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhcc-cccccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 2222 227999999999999982 5557888889999999986
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.31 E-value=1.6e-06 Score=75.75 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=71.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCc---hhhHhhcCCCCccceeec
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGND---FNTLFQTMPPSRKYFAFG 138 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~ND---Fn~lf~~l~~~~~~f~~g 138 (373)
+..+|+|+|||+|..++.+.... .+..+++.-|+-..- -+..++.+...+--|..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~---------------------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~ 61 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL---------------------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG 61 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS---------------------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhc---------------------CCCCEEEEEECcHHHHHHhhcccccccccccceEEe
Confidence 46899999999999998884311 112367777775422 233333333333445665
Q ss_pred cCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 139 VPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 139 vpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
.-.+ ..+.++ +++|+++++.++||+. |...+|+.-.+-|+
T Consensus 62 d~~~-l~~~~~-~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~lk 101 (152)
T PF13847_consen 62 DIED-LPQELE-EKFDIIISNGVLHHFP--------------------------------------DPEKVLKNIIRLLK 101 (152)
T ss_dssp BTTC-GCGCSS-TTEEEEEEESTGGGTS--------------------------------------HHHHHHHHHHHHEE
T ss_pred ehhc-cccccC-CCeeEEEEcCchhhcc--------------------------------------CHHHHHHHHHHHcC
Confidence 5544 222245 8999999999999966 34467777789999
Q ss_pred cCCeEEEEecc
Q 017363 219 PGGLIVFVLFS 229 (373)
Q Consensus 219 pGG~lvl~~~g 229 (373)
+||++++....
T Consensus 102 ~~G~~i~~~~~ 112 (152)
T PF13847_consen 102 PGGILIISDPN 112 (152)
T ss_dssp EEEEEEEEEEE
T ss_pred CCcEEEEEECC
Confidence 99999998887
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=0.00018 Score=69.70 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=109.6
Q ss_pred CceEEeeecCCCCcccHHHHHHH-------------HHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNI-------------IEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM 128 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~i-------------i~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l 128 (373)
.-.+|+|+|||-|..++..+... .+..+++.+..+ -...++|.+-|.+ ||+.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g--------l~~~v~v~l~d~r--d~~e----- 136 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG--------LEDNVEVRLQDYR--DFEE----- 136 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC--------CCcccEEEecccc--cccc-----
Confidence 35899999999999999987654 222233222221 1124577777764 2221
Q ss_pred CCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHH
Q 017363 129 PPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEA 208 (373)
Q Consensus 129 ~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~ 208 (373)
.+|=++|-=.++.+. .+.+..
T Consensus 137 -----------------------~fDrIvSvgmfEhvg------------------------------------~~~~~~ 157 (283)
T COG2230 137 -----------------------PFDRIVSVGMFEHVG------------------------------------KENYDD 157 (283)
T ss_pred -----------------------ccceeeehhhHHHhC------------------------------------cccHHH
Confidence 156666655555543 235668
Q ss_pred HHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhc
Q 017363 209 FLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERN 288 (373)
Q Consensus 209 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~ 288 (373)
|++.-.+-|+|||+|++-..+..+.... .. . .. +. +.|-+. -+.||..++....++.
T Consensus 158 ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~-~----~~----i~-----~yiFPg--------G~lPs~~~i~~~~~~~ 214 (283)
T COG2230 158 FFKKVYALLKPGGRMLLHSITGPDQEFR-RF-P----DF----ID-----KYIFPG--------GELPSISEILELASEA 214 (283)
T ss_pred HHHHHHhhcCCCceEEEEEecCCCcccc-cc-h----HH----HH-----HhCCCC--------CcCCCHHHHHHHHHhc
Confidence 9999999999999999999887654221 00 0 00 01 111111 2779999999999989
Q ss_pred CceEEeEEEEecCCCCCCCCCCHHHHHHhHHHhhhhHHHhhhCh--HHHHHHHH-HHHHHHHhhcccc
Q 017363 289 GCFRIERMDKLPDPPLMRLKPSPESVTSQIRAVFEGVVKEHFGY--DLVDKIFN-FFTAKFAENFIFG 353 (373)
Q Consensus 289 gsF~I~~le~~~~~~~~~~~~~~~~~~~~iRa~~e~~l~~h~g~--~i~delf~-ry~~~~~~~~~~~ 353 (373)
| |.+...+.+ +..++.+++.|.+.+-+ ++.+ .++++-|. +|...+..-...+
T Consensus 215 ~-~~v~~~~~~-----------~~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F 269 (283)
T COG2230 215 G-FVVLDVESL-----------RPHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF 269 (283)
T ss_pred C-cEEehHhhh-----------cHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 8 887665543 34577777777776654 4432 23444443 4555555443333
No 39
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.19 E-value=3.6e-05 Score=72.51 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=64.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
.-.+.|+|||+|-.++.+... +. +|+-.|..+.- .+.+.+..+.-..-+|-+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~--------~k----------------~VIatD~s~~m----L~~a~k~~~~~y~~t~~~ 85 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH--------YK----------------EVIATDVSEAM----LKVAKKHPPVTYCHTPST 85 (261)
T ss_pred cceEEEeccCCCcchHHHHHh--------hh----------------hheeecCCHHH----HHHhhcCCCcccccCCcc
Confidence 348999999999666655222 21 56666665322 222211111111111222
Q ss_pred cc----cCCC-CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 143 FH----GRLF-PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 143 Fy----~rlf-P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+= ..|. +++|||+|.+.-|+||. |+.+|++.-.+-|
T Consensus 86 ms~~~~v~L~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvL 126 (261)
T KOG3010|consen 86 MSSDEMVDLLGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVL 126 (261)
T ss_pred ccccccccccCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHc
Confidence 21 2233 58999999999999993 6778999999999
Q ss_pred ccCCeEEEEeccCCCC
Q 017363 218 VPGGLIVFVLFSLPNG 233 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~ 233 (373)
++.|-+++...=+++.
T Consensus 127 Rk~Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 127 RKDGGLIAVWNYNDDF 142 (261)
T ss_pred CCCCCEEEEEEccCCC
Confidence 9988776666655444
No 40
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=2.5e-05 Score=73.18 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=76.2
Q ss_pred CCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEe
Q 017363 148 FPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 148 fP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
|-.+|+|+++|+-++||..++|.. .......|||.|.|+.++
T Consensus 133 f~ens~DLiisSlslHW~NdLPg~--------------------------------------m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGS--------------------------------------MIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccccchhhhhhhhhhhhhccCchH--------------------------------------HHHHHHhcCCCccchhHH
Confidence 567999999999999999999843 234457899999999999
Q ss_pred ccCCCCCCccCCCchhHHH-HHHHHHHHHhhcCCCChhhhcccCcccccC--CHHHHHHHHHhcCceEEeEEEEecCCCC
Q 017363 228 FSLPNGVPMIDSNGGKLYG-FLGSCLIDMTTKGLIDEEKVDSFNIPLYFP--TAEELKAIIERNGCFRIERMDKLPDPPL 304 (373)
Q Consensus 228 ~g~~~~~~~~~~~~~~~~~-~l~~al~~mv~eGli~~e~~d~f~~P~y~p--s~eE~~~~ie~~gsF~I~~le~~~~~~~ 304 (373)
+|-+. +++ -++.-|.+|..+|-|+ |..-| ...++-.++.+.| |....+..-+..-.
T Consensus 175 lggdT-----------LyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F~m~tvDtDEi~v~ 233 (325)
T KOG2940|consen 175 LGGDT-----------LYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-FSMLTVDTDEIVVG 233 (325)
T ss_pred hcccc-----------HHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-cccceecccceeec
Confidence 98553 233 2344477899999876 33333 4567778888888 86544332211111
Q ss_pred CCCCCCHHHHHHhHHHhhh
Q 017363 305 MRLKPSPESVTSQIRAVFE 323 (373)
Q Consensus 305 ~~~~~~~~~~~~~iRa~~e 323 (373)
+ ...-.+.-.+++..|
T Consensus 234 Y---p~mfeLm~dLq~MgE 249 (325)
T KOG2940|consen 234 Y---PRMFELMEDLQGMGE 249 (325)
T ss_pred C---chHHHHHHHHHhhcc
Confidence 1 012345667777666
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.15 E-value=1.1e-05 Score=74.18 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=63.0
Q ss_pred CceEEeeecCCCCcccHHHH------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC
Q 017363 62 GTFKLADFGCSVGPNTFIAV------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP 129 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~ 129 (373)
++-+++|+|||.|+||+.+. ...|+.+.+.-... ..+++...-|+-.-
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~----------~l~i~~~~~Dl~~~---------- 89 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE----------GLDIRTRVADLNDF---------- 89 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT----------T-TEEEEE-BGCCB----------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc----------CceeEEEEecchhc----------
Confidence 35799999999999999987 34555554443322 23367777777321
Q ss_pred CCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHH
Q 017363 130 PSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAF 209 (373)
Q Consensus 130 ~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~F 209 (373)
-+ ++.+|+++|..++|.|..- .+..+
T Consensus 90 -----------------~~-~~~yD~I~st~v~~fL~~~------------------------------------~~~~i 115 (192)
T PF03848_consen 90 -----------------DF-PEEYDFIVSTVVFMFLQRE------------------------------------LRPQI 115 (192)
T ss_dssp -----------------S--TTTEEEEEEESSGGGS-GG------------------------------------GHHHH
T ss_pred -----------------cc-cCCcCEEEEEEEeccCCHH------------------------------------HHHHH
Confidence 12 3679999999999998721 33467
Q ss_pred HHHHHhhhccCCeEEEEecc
Q 017363 210 LNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 210 L~~Ra~EL~pGG~lvl~~~g 229 (373)
++...+.++|||++++..+-
T Consensus 116 ~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 116 IENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp HHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHhhcCCcEEEEEEEec
Confidence 78888999999998886553
No 42
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.10 E-value=0.00011 Score=67.85 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=56.8
Q ss_pred CCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 150 KSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 150 ~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
++++|+++++.++|+.. |...+|+.-.+-|+|||.+++....
T Consensus 110 ~~~~D~i~~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVP--------------------------------------DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCccEEEehhHHHhCC--------------------------------------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 47899999999988854 2336788888889999999887654
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEE
Q 017363 230 LPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDK 298 (373)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~ 298 (373)
+... . .+..+.. .++.. +.+.... .....+.+.+++.+++++.| |+|..++-
T Consensus 152 ~~~~--------~-~~~~~~~--~~~~~-~~~~~~~----~~~~~~~~~~~l~~~l~~~G-~~i~~~~~ 203 (224)
T TIGR01983 152 RTPK--------S-YLLAIVG--AEYIL-RIVPKGT----HDWEKFIKPSELTSWLESAG-LRVKDVKG 203 (224)
T ss_pred CCch--------H-HHHHHHh--hhhhh-hcCCCCc----CChhhcCCHHHHHHHHHHcC-Ceeeeeee
Confidence 3211 0 1111100 01111 1111100 00113558999999999998 99987773
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.09 E-value=0.00023 Score=65.96 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=24.6
Q ss_pred cccccCCHHHHHHHHHhcCceEEeEEEEec
Q 017363 271 IPLYFPTAEELKAIIERNGCFRIERMDKLP 300 (373)
Q Consensus 271 ~P~y~ps~eE~~~~ie~~gsF~I~~le~~~ 300 (373)
.++++++.+|+..+++..| |++...+.+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 4578899999999999999 9998877553
No 44
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.09 E-value=8.1e-05 Score=72.62 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=87.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhh-cCCC---Cccceee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQ-TMPP---SRKYFAF 137 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~-~l~~---~~~~f~~ 137 (373)
+..+|+|+|||+|..++.+.+. -|..+++.-|+|. .-...+ .+.. ..+ +.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~----------------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~r--v~ 202 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH----------------------FPELDSTILNLPG--AIDLVNENAAEKGVADR--MR 202 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH----------------------CCCCEEEEEecHH--HHHHHHHHHHhCCccce--EE
Confidence 4579999999999888776222 1344677778862 122221 1111 111 34
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
.++|+|+..-+|+ .|+++.+..+|-... .+-..+|+.-++-|
T Consensus 203 ~~~~d~~~~~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L 244 (306)
T TIGR02716 203 GIAVDIYKESYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAM 244 (306)
T ss_pred EEecCccCCCCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhc
Confidence 5677888755665 499988888884221 01235788888999
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRI 293 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I 293 (373)
+|||++++.=...++... ..+..+...+. .-|... .+.-+++.+|+.+++++.| |+.
T Consensus 245 ~pgG~l~i~d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~ 301 (306)
T TIGR02716 245 RSGGRLLILDMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKD 301 (306)
T ss_pred CCCCEEEEEEeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCe
Confidence 999999887543322211 01222222211 112210 1113556899999999999 863
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.03 E-value=2.1e-05 Score=71.70 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHhcCceEEeEEEEec
Q 017363 273 LYFPTAEELKAIIERNGCFRIERMDKLP 300 (373)
Q Consensus 273 ~y~ps~eE~~~~ie~~gsF~I~~le~~~ 300 (373)
..++|.+|+.+++++.| |++.....+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 46889999999999999 9998888774
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.03 E-value=1.3e-05 Score=73.80 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCce
Q 017363 29 SFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALE 108 (373)
Q Consensus 29 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~ 108 (373)
.+|+.+.....|.+-........ .+. ....+|+|+|||+|..+..+.... |.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~VLDiGcGtG~~~~~la~~~----------------------p~ 64 (202)
T PRK00121 13 KGQQRAIEELWPRLSPAPLDWAE--LFG----NDAPIHLEIGFGKGEFLVEMAKAN----------------------PD 64 (202)
T ss_pred cchhhhhcccchhhcCCCCCHHH--HcC----CCCCeEEEEccCCCHHHHHHHHHC----------------------CC
Confidence 34566666666666433222111 121 245799999999999999873321 11
Q ss_pred eEEEecCCCCCchhhHhhcCC---CCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCce
Q 017363 109 FQVFFNDHYGNDFNTLFQTMP---PSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSI 185 (373)
Q Consensus 109 ~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I 185 (373)
.+|+-.|.-..--...-+.+. ..+-.|..+..-..+.+.+|++++|.++++.+.+|..... . ++
T Consensus 65 ~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~-~----------~~-- 131 (202)
T PRK00121 65 INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH-H----------KR-- 131 (202)
T ss_pred ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc-c----------cc--
Confidence 256666665432222222111 1111233333201123457889999999998888865321 0 00
Q ss_pred eecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCC
Q 017363 186 ICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGL 260 (373)
Q Consensus 186 ~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGl 260 (373)
+.+...||+.-++-|+|||++++.... .+.+...+..|...|+
T Consensus 132 -----------------~~~~~~~l~~i~~~LkpgG~l~i~~~~---------------~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 132 -----------------RLVQPEFLALYARKLKPGGEIHFATDW---------------EGYAEYMLEVLSAEGG 174 (202)
T ss_pred -----------------ccCCHHHHHHHHHHcCCCCEEEEEcCC---------------HHHHHHHHHHHHhCcc
Confidence 012346888889999999999987532 1334445556666676
No 47
>PRK06922 hypothetical protein; Provisional
Probab=98.03 E-value=6.9e-06 Score=87.35 Aligned_cols=116 Identities=22% Similarity=0.121 Sum_probs=70.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC--CccceeeccC
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP--SRKYFAFGVP 140 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~--~~~~f~~gvp 140 (373)
..+|+|+|||+|..+..+.. . .|..+++--|+..+--...=+.++. .+-.+..+..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--------~--------------~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa 476 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--------E--------------TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA 476 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------h--------------CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch
Confidence 46999999999987765522 1 1234677777765322221111111 1112333333
Q ss_pred cccccCCCCCCcceEEEccCccccc-ccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWL-SKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWL-S~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
..+ ...||++++|++++++++||+ +.+|..-. .++ .+|...+|+.-.+-|||
T Consensus 477 ~dL-p~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKP 529 (677)
T PRK06922 477 INL-SSSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKP 529 (677)
T ss_pred HhC-ccccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCC
Confidence 221 223788999999999999975 44542110 011 24777899999999999
Q ss_pred CCeEEEEe
Q 017363 220 GGLIVFVL 227 (373)
Q Consensus 220 GG~lvl~~ 227 (373)
||++++.=
T Consensus 530 GGrLII~D 537 (677)
T PRK06922 530 GGRIIIRD 537 (677)
T ss_pred CcEEEEEe
Confidence 99999963
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.00 E-value=3.7e-05 Score=73.28 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=53.1
Q ss_pred cHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHH
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAI 284 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ 284 (373)
|...||++-.+-|+|||+|+++...|.=..-. +.+ .+.+.+...|-.|.-.-| -|.+++|+..+
T Consensus 173 dp~~~l~~l~~~lkP~G~lfittinrt~lS~~-----~~i--~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~~ 236 (282)
T KOG1270|consen 173 DPQEFLNCLSALLKPNGRLFITTINRTILSFA-----GTI--FLAEIVLRIVPKGTHTWE---------KFINPEELTSI 236 (282)
T ss_pred CHHHHHHHHHHHhCCCCceEeeehhhhHHHhh-----ccc--cHHHHHHHhcCCCCcCHH---------HcCCHHHHHHH
Confidence 67789999999999999999999877522110 001 122333337777775554 47899999999
Q ss_pred HHhcCceEEeEEE
Q 017363 285 IERNGCFRIERMD 297 (373)
Q Consensus 285 ie~~gsF~I~~le 297 (373)
++.++ +.++.+.
T Consensus 237 l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 237 LNANG-AQVNDVV 248 (282)
T ss_pred HHhcC-cchhhhh
Confidence 99987 6665544
No 49
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.97 E-value=5.1e-05 Score=73.98 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=97.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC----CCccceee
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP----PSRKYFAF 137 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~----~~~~~f~~ 137 (373)
+--+|+|+||+.|.-++.+. .. + +. .|+--| |+-.|..-|.-+. ....+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~--------~~----G----------A~-~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML--------GR----G----------AK-SVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh--------hc----C----------CC-EEEEEC-CChHHHHHHHHHHHHhCCCccEEEc
Confidence 34699999999999998772 11 1 11 455555 4445555555442 23334433
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
.++ -+.|-+.+++|+|||.-.|=.++..= ..|+.-..-|
T Consensus 171 plg---vE~Lp~~~~FDtVF~MGVLYHrr~Pl--------------------------------------~~L~~Lk~~L 209 (315)
T PF08003_consen 171 PLG---VEDLPNLGAFDTVFSMGVLYHRRSPL--------------------------------------DHLKQLKDSL 209 (315)
T ss_pred Ccc---hhhccccCCcCEEEEeeehhccCCHH--------------------------------------HHHHHHHHhh
Confidence 221 24555578999999988876655321 3455556789
Q ss_pred ccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceE
Q 017363 218 VPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFR 292 (373)
Q Consensus 218 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~ 292 (373)
+|||.||+.++..+.... .-+++++.+..|+.-|+.||..-++.+++++| |+
T Consensus 210 ~~gGeLvLETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~ 261 (315)
T PF08003_consen 210 RPGGELVLETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FK 261 (315)
T ss_pred CCCCEEEEEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cc
Confidence 999999999987554321 13567777889999999999999999999999 84
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.96 E-value=0.00021 Score=66.55 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEec
Q 017363 149 PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 149 P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
+++++|+++++..+++.. |...+|+...+-|+|||+|++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVP--------------------------------------DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccC--------------------------------------CHHHHHHHHHHHcCCCcEEEEEec
Confidence 557899999998888754 223577788888999999998876
Q ss_pred cCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 229 SLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 229 g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
++... ...+.... .+.+..++-. .......+.+.+|+.+++++.| |++....
T Consensus 153 ~~~~~--------~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~ 204 (233)
T PRK05134 153 NRNLK--------SYLLAIVG---AEYVLRMLPK-----GTHDYKKFIKPSELAAWLRQAG-LEVQDIT 204 (233)
T ss_pred CCChH--------HHHHHHhh---HHHHhhhcCc-----ccCchhhcCCHHHHHHHHHHCC-CeEeeee
Confidence 53211 00111111 1111111110 0011124678999999999999 9887665
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.96 E-value=4.1e-05 Score=79.17 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=80.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC--CccceeeccC
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP--SRKYFAFGVP 140 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~--~~~~f~~gvp 140 (373)
..+|+|+|||+|.+|..+.... . +|+-.|.-..-... -+.... .+-.|..+..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~--------~----------------~v~giD~s~~~l~~-a~~~~~~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA--------G----------------QVIALDFIESVIKK-NESINGHYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC--------C----------------EEEEEeCCHHHHHH-HHHHhccCCceEEEEecc
Confidence 3589999999999999874321 0 45555543221111 011111 1122433333
Q ss_pred cccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG 220 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 220 (373)
... ..-+|++++|+++|+.++||++.. ++..+|+..++-|+||
T Consensus 93 ~~~-~~~~~~~~fD~I~~~~~l~~l~~~------------------------------------~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 93 TSP-DLNISDGSVDLIFSNWLLMYLSDK------------------------------------EVENLAERMVKWLKVG 135 (475)
T ss_pred ccc-ccCCCCCCEEEEehhhhHHhCCHH------------------------------------HHHHHHHHHHHhcCCC
Confidence 211 122688999999999999998631 3457888889999999
Q ss_pred CeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcC
Q 017363 221 GLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNG 289 (373)
Q Consensus 221 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~g 289 (373)
|+|++.=...... |-+ ..-.-|..+++..+++.++.++|
T Consensus 136 G~l~~~d~~~~~~-------------------------~~~-----~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 136 GYIFFRESCFHQS-------------------------GDS-----KRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred eEEEEEeccCCCC-------------------------Ccc-----cccCCCCeecChHHHHHHHHHhe
Confidence 9998752211100 000 00123556788999999998876
No 52
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.95 E-value=3.3e-05 Score=72.00 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=84.2
Q ss_pred chhHHhhHH---HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCC
Q 017363 22 YSYAKNSSF---QRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQD 98 (373)
Q Consensus 22 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~ 98 (373)
.-|.+||.+ |..+.+.++.++. ++ .+++--|+|+|||+|--+-.+-+
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLa--------lp------~~~~~~iLDIGCGsGLSg~vL~~---------------- 70 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLA--------LP------GPKSGLILDIGCGSGLSGSVLSD---------------- 70 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhh--------CC------CCCCcEEEEeccCCCcchheecc----------------
Confidence 358889876 5666666555543 32 44688999999999976654411
Q ss_pred CcCCCCCCceeEEEecCCCCCchhhHh-hcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCC
Q 017363 99 NHQNSSSALEFQVFFNDHYGNDFNTLF-QTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRS 177 (373)
Q Consensus 99 ~~~~~~~~~~~~v~~nDLp~NDFn~lf-~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~ 177 (373)
+.-+++--|..--.-..-- +.+. .. ++.++=| -+--|+++++|-++|-+|+|||=..-+....
T Consensus 71 --------~Gh~wiGvDiSpsML~~a~~~e~e--gd-lil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~--- 134 (270)
T KOG1541|consen 71 --------SGHQWIGVDISPSMLEQAVERELE--GD-LILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHV--- 134 (270)
T ss_pred --------CCceEEeecCCHHHHHHHHHhhhh--cC-eeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccC---
Confidence 0012333333211000000 0000 01 1111111 2445899999999999999998654322110
Q ss_pred CCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCC
Q 017363 178 PAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPN 232 (373)
Q Consensus 178 ~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 232 (373)
=++.+..|+..-..-|++|++-|+.+--..+
T Consensus 135 ------------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 135 ------------------------PKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred ------------------------hHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 1356778999999999999999999865443
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.94 E-value=8.5e-05 Score=67.44 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchh---hHhhcCCCCccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFN---TLFQTMPPSRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn---~lf~~l~~~~~~f~~gv 139 (373)
..+|+|+|||+|..|+.+.. .. +..+|+.-|...+--. ...+...-.+--|..+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~~--------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d 100 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------AR--------------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR 100 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------HC--------------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 46999999999999988721 11 1125777776654211 11111111122244444
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
.- .+.+.+++|+++|.. +|++ ..+++.-.+-|+|
T Consensus 101 ~~----~~~~~~~fD~I~s~~-~~~~-----------------------------------------~~~~~~~~~~Lkp 134 (181)
T TIGR00138 101 AE----DFQHEEQFDVITSRA-LASL-----------------------------------------NVLLELTLNLLKV 134 (181)
T ss_pred hh----hccccCCccEEEehh-hhCH-----------------------------------------HHHHHHHHHhcCC
Confidence 32 234568999999865 4332 1344444567999
Q ss_pred CCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcc
Q 017363 220 GGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIP 272 (373)
Q Consensus 220 GG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P 272 (373)
||++++.... .. ...+....+.+...|+- .-+.+++..|
T Consensus 135 gG~lvi~~~~-~~------------~~~~~~~~e~~~~~~~~-~~~~~~~~~~ 173 (181)
T TIGR00138 135 GGYFLAYKGK-KY------------LDEIEEAKRKCQVLGVE-PLEVPPLTGP 173 (181)
T ss_pred CCEEEEEcCC-Cc------------HHHHHHHHHhhhhcCce-EeeccccCCC
Confidence 9999987421 11 12333344566667763 4455777777
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.93 E-value=3.7e-05 Score=70.61 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCceEEeeecCCCCcccHHHH------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc
Q 017363 60 TCGTFKLADFGCSVGPNTFIAV------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT 127 (373)
Q Consensus 60 ~~~~~~IaD~GCs~G~NS~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~ 127 (373)
.+..-+++|+|||.|.+|..+. ...|+.-++++.. .+.+++..-|+|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~--------- 100 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPE--------- 100 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT---------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCC---------
Confidence 3567899999999999999886 5666666666542 3567888888873
Q ss_pred CCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHH
Q 017363 128 MPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTE 207 (373)
Q Consensus 128 l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~ 207 (373)
..|++++|+++.+-.+++|+..+ |+.
T Consensus 101 -------------------~~P~~~FDLIV~SEVlYYL~~~~-----------------------------------~L~ 126 (201)
T PF05401_consen 101 -------------------FWPEGRFDLIVLSEVLYYLDDAE-----------------------------------DLR 126 (201)
T ss_dssp ----------------------SS-EEEEEEES-GGGSSSHH-----------------------------------HHH
T ss_pred -------------------CCCCCCeeEEEEehHhHcCCCHH-----------------------------------HHH
Confidence 24889999999999999998533 677
Q ss_pred HHHHHHHhhhccCCeEEEEec
Q 017363 208 AFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
.++..-.+-|.|||.||+.-.
T Consensus 127 ~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 127 AALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEe
Confidence 888999999999999999665
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.93 E-value=0.00026 Score=65.54 Aligned_cols=29 Identities=14% Similarity=0.468 Sum_probs=24.0
Q ss_pred cccccCCHHHHHHHHHhcCceEEeEEEEec
Q 017363 271 IPLYFPTAEELKAIIERNGCFRIERMDKLP 300 (373)
Q Consensus 271 ~P~y~ps~eE~~~~ie~~gsF~I~~le~~~ 300 (373)
.+.+..+.+|+...++..| |++.+.+.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 4567789999999999999 9988877654
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.90 E-value=6.5e-05 Score=69.73 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=66.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
.-+|+|+|||+|..|..+++.. . +.-+|+--|+-. .+ .++ +-.|+.+ +
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------~-------------~~~~V~aVDi~~--~~----~~~--~v~~i~~---D 99 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------G-------------DKGRVIACDILP--MD----PIV--GVDFLQG---D 99 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------C-------------CCceEEEEeccc--cc----CCC--CcEEEec---C
Confidence 3589999999999887774322 1 112566666632 11 111 1223333 3
Q ss_pred cccC--------CCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 017363 143 FHGR--------LFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARA 214 (373)
Q Consensus 143 Fy~r--------lfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 214 (373)
+... -++++++|+++|+.+.||... |. .| . + .+ .......|+.-.
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~--~--~~-~~~~~~~L~~~~ 152 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I--P--RA-MYLVELALDMCR 152 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H--H--HH-HHHHHHHHHHHH
Confidence 3332 257789999999999999441 11 00 0 0 00 011346888889
Q ss_pred hhhccCCeEEEEeccCC
Q 017363 215 HELVPGGLIVFVLFSLP 231 (373)
Q Consensus 215 ~EL~pGG~lvl~~~g~~ 231 (373)
+-|+|||+|++..+..+
T Consensus 153 ~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 153 DVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHcCCCCEEEEEEecCc
Confidence 99999999999766543
No 57
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.88 E-value=7.4e-05 Score=71.82 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEE
Q 017363 148 FPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 148 fP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 226 (373)
+|.+++|+|+|.++|||++. | +...+|+.-++-|+|||+|++.
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~-----------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P-----------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H-----------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999863 2 3336778888999999999874
No 58
>PRK05785 hypothetical protein; Provisional
Probab=97.88 E-value=0.00011 Score=68.93 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=47.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
.-+|+|+|||+|.++..+.... ..+|+--|+..+- -...+. ..-++ -++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-----------------------~~~v~gvD~S~~M-l~~a~~----~~~~~---~~d 100 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-----------------------KYYVVALDYAENM-LKMNLV----ADDKV---VGS 100 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-----------------------CCEEEEECCCHHH-HHHHHh----ccceE---Eec
Confidence 4699999999999887762221 0157777764332 111111 11122 344
Q ss_pred cccCCCCCCcceEEEccCcccccccc
Q 017363 143 FHGRLFPKSSLHFANSSSSLNWLSKI 168 (373)
Q Consensus 143 Fy~rlfP~~Svd~~~Ss~alHWLS~~ 168 (373)
+..--||++|+|+++|+.+|||+.+.
T Consensus 101 ~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 101 FEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred hhhCCCCCCCEEEEEecChhhccCCH
Confidence 45555789999999999999997643
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.86 E-value=6.2e-05 Score=73.62 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=70.9
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC-CccceeeccCc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP-SRKYFAFGVPG 141 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~-~~~~f~~gvpg 141 (373)
..+|+|+|||+|..|..+++.... ..+++--|+...--....+.+.. .+..=+.++-|
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~---------------------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ---------------------PARYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc---------------------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 468999999999999988665410 12567777764322222233321 12222334445
Q ss_pred ccccCC-CCCC----cceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 142 SFHGRL-FPKS----SLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 142 SFy~rl-fP~~----Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
.|.+.+ +|+. ...++++.+++++++ | .|...||+.-++-
T Consensus 123 D~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~----------------------------------~e~~~~L~~i~~~ 166 (301)
T TIGR03438 123 DFTQPLALPPEPAAGRRLGFFPGSTIGNFT--P----------------------------------EEAVAFLRRIRQL 166 (301)
T ss_pred cccchhhhhcccccCCeEEEEecccccCCC--H----------------------------------HHHHHHHHHHHHh
Confidence 555432 2322 456778888899976 2 1445799999999
Q ss_pred hccCCeEEEEeccCCC
Q 017363 217 LVPGGLIVFVLFSLPN 232 (373)
Q Consensus 217 L~pGG~lvl~~~g~~~ 232 (373)
|+|||+|++.+-...+
T Consensus 167 L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 167 LGPGGGLLIGVDLVKD 182 (301)
T ss_pred cCCCCEEEEeccCCCC
Confidence 9999999988765544
No 60
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=7.9e-05 Score=70.26 Aligned_cols=212 Identities=15% Similarity=0.167 Sum_probs=118.3
Q ss_pred hhhcCccccccCCCCCc--hhHHhhHHHHHHHHH--------HHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCc
Q 017363 6 ANVLPGSFPMVGGDGDY--SYAKNSSFQRMIIDA--------AKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGP 75 (373)
Q Consensus 6 ~~~~~~~~~M~gG~G~~--sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~ 75 (373)
-+-+++..+|..-+ +. -|..++..+...... -..||.....++++.+ ...+.+|+++|||.|.
T Consensus 12 ~~~~k~~~~~~~~~-~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~------~~~~~~ilEvGCGvGN 84 (264)
T KOG2361|consen 12 RKKVKEQSASRVLE-EEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD------EKSAETILEVGCGVGN 84 (264)
T ss_pred HHHHhhccccccch-hhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc------ccChhhheeeccCCCc
Confidence 33355556665532 22 577777776655532 3567777777655432 1224499999999997
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC--Cccc--eeeccCcccccCCCCCC
Q 017363 76 NTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP--SRKY--FAFGVPGSFHGRLFPKS 151 (373)
Q Consensus 76 NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~--~~~~--f~~gvpgSFy~rlfP~~ 151 (373)
.++-+++.. +.+.+.+|..|-..+--.-+ +.-.. ...+ |+.-.-++=-..-++++
T Consensus 85 tvfPll~~~--------------------~n~~l~v~acDfsp~Ai~~v-k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~ 143 (264)
T KOG2361|consen 85 TVFPLLKTS--------------------PNNRLKVYACDFSPRAIELV-KKSSGYDESRVEAFVWDLTSPSLKEPPEEG 143 (264)
T ss_pred ccchhhhcC--------------------CCCCeEEEEcCCChHHHHHH-HhccccchhhhcccceeccchhccCCCCcC
Confidence 776663221 23447888888775442222 11111 1111 22222111134455667
Q ss_pred cceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCC
Q 017363 152 SLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLP 231 (373)
Q Consensus 152 Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 231 (373)
|+|++..-+.| |-+|+.- +..-+..-.+-|||||.|++-=.|+.
T Consensus 144 svD~it~IFvL---SAi~pek---------------------------------~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 144 SVDIITLIFVL---SAIHPEK---------------------------------MQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred ccceEEEEEEE---eccChHH---------------------------------HHHHHHHHHHHhCCCcEEEEeecccc
Confidence 78877655443 4444332 22455666788999999999888877
Q ss_pred CCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhh-cccCcccccCCHHHHHHHHHhcCceEEeEEEEe
Q 017363 232 NGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKV-DSFNIPLYFPTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~-d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
+.... +-+ .+-.|++..+ ..=--+.|+-+.+|+++++.+.| |..++++..
T Consensus 188 Dlaql----------------RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 188 DLAQL----------------RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred hHHHH----------------hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 64221 000 1111111100 00013669999999999999999 876666533
No 61
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.80 E-value=0.00012 Score=69.59 Aligned_cols=171 Identities=21% Similarity=0.241 Sum_probs=103.2
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-----CCC-Cccc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-----MPP-SRKY 134 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-----l~~-~~~~ 134 (373)
....+++|.+||||-.|+.++..+ ..+.+ .-+-+|...|.-.+--+---+. +.. .+-.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v----~s~~~------------~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~ 162 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHV----KSQFG------------DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVE 162 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhh----ccccC------------CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceE
Confidence 456999999999999999996665 22211 1122677777754332111110 101 1234
Q ss_pred eeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 017363 135 FAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARA 214 (373)
Q Consensus 135 f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 214 (373)
|+.|.. ..--||++|+|...+++.+--.-+++.++ .+||
T Consensus 163 w~~~dA---E~LpFdd~s~D~yTiafGIRN~th~~k~l----------------------~EAY---------------- 201 (296)
T KOG1540|consen 163 WVEGDA---EDLPFDDDSFDAYTIAFGIRNVTHIQKAL----------------------REAY---------------- 201 (296)
T ss_pred EEeCCc---ccCCCCCCcceeEEEecceecCCCHHHHH----------------------HHHH----------------
Confidence 666666 34447999999999999887655555333 3455
Q ss_pred hhhccCCeEEEEeccCCCCCCccCCCchhHH---HHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCce
Q 017363 215 HELVPGGLIVFVLFSLPNGVPMIDSNGGKLY---GFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCF 291 (373)
Q Consensus 215 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~---~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF 291 (373)
+-|||||+|.+.-+.+-+..+.......+.+ -.+.+.+....+.+..=-+-+. -+|+.||+...+++.| |
T Consensus 202 RVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F 274 (296)
T KOG1540|consen 202 RVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-F 274 (296)
T ss_pred HhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-C
Confidence 5899999999888887764332111111222 2333444433333322111111 4699999999999999 8
Q ss_pred EEeE
Q 017363 292 RIER 295 (373)
Q Consensus 292 ~I~~ 295 (373)
....
T Consensus 275 ~~~~ 278 (296)
T KOG1540|consen 275 SSVN 278 (296)
T ss_pred cccc
Confidence 7654
No 62
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.76 E-value=0.0001 Score=70.85 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=43.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPG 141 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpg 141 (373)
...+|+|+|||+|..+..+.... .. ....+++-.|+..+--...-+..+ +--|..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~-----------~~~~~v~giD~s~~~l~~A~~~~~--~~~~~~~d-- 141 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE-----------ITTMQLFGLDISKVAIKYAAKRYP--QVTFCVAS-- 141 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc-----------ccCCeEEEECCCHHHHHHHHHhCC--CCeEEEee--
Confidence 34689999999999888774322 10 001267778875433222211111 12233333
Q ss_pred ccccCCCCCCcceEEEccCc
Q 017363 142 SFHGRLFPKSSLHFANSSSS 161 (373)
Q Consensus 142 SFy~rlfP~~Svd~~~Ss~a 161 (373)
..+--||++|+|+++|..+
T Consensus 142 -~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 142 -SHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred -cccCCCcCCceeEEEEecC
Confidence 2333478899999998654
No 63
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.68 E-value=0.00013 Score=66.65 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=63.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC---Cccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---SRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~---~~~~f~~gv 139 (373)
.-+|+|+|||+|..++.+.... |..+++--|+-..-....-+.+.. .+-.|+.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~----------------------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d 74 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN----------------------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD 74 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC----------------------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 3589999999999998774321 122344444432211111111110 011122222
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
.-.+-..++|++++|.++++...+|..+.- . |.++ ....||+.-++-|+|
T Consensus 75 ~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h-~----------~~r~-------------------~~~~~l~~~~r~Lkp 124 (194)
T TIGR00091 75 ANELLDKFFPDGSLSKVFLNFPDPWPKKRH-N----------KRRI-------------------TQPHFLKEYANVLKK 124 (194)
T ss_pred HHHHHHhhCCCCceeEEEEECCCcCCCCCc-c----------cccc-------------------CCHHHHHHHHHHhCC
Confidence 222223456778999999999999954210 0 0011 113688888899999
Q ss_pred CCeEEEEec
Q 017363 220 GGLIVFVLF 228 (373)
Q Consensus 220 GG~lvl~~~ 228 (373)
||.+++..-
T Consensus 125 gG~l~~~td 133 (194)
T TIGR00091 125 GGVIHFKTD 133 (194)
T ss_pred CCEEEEEeC
Confidence 999988763
No 64
>PTZ00146 fibrillarin; Provisional
Probab=97.68 E-value=0.00054 Score=66.84 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=17.1
Q ss_pred ceEEeeecCCCCcccHHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQN 83 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ 83 (373)
-.+|+|+|||+|..|..+.+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHH
Confidence 368999999999988777443
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.68 E-value=0.00063 Score=63.43 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHH
Q 017363 207 EAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIE 286 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie 286 (373)
..+++.-.+-|+|||++++..+..+.... .| |-|.-+.+|+++.+.
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------------------~g------------pp~~~~~~eL~~~f~ 177 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDYDQSEM----------------------AG------------PPFSVSPAEVEALYG 177 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------------------CC------------cCCCCCHHHHHHHhc
Confidence 46788889999999998887776542211 12 447789999999987
Q ss_pred hcCceEEeEEEEec
Q 017363 287 RNGCFRIERMDKLP 300 (373)
Q Consensus 287 ~~gsF~I~~le~~~ 300 (373)
.. |+|+.++...
T Consensus 178 ~~--~~i~~~~~~~ 189 (213)
T TIGR03840 178 GH--YEIELLESRD 189 (213)
T ss_pred CC--ceEEEEeecc
Confidence 43 8888877543
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.66 E-value=0.00027 Score=65.40 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCchhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCC
Q 017363 20 GDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDN 99 (373)
Q Consensus 20 G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~ 99 (373)
|.. |-+....+... .....++.+.+.. + ++.-+|+|+|||+|.++..+....
T Consensus 14 g~~-~~~rn~~~~~~-~~~~~~~~~~l~~---~--------~~~~~VLDiGCG~G~~~~~L~~~~--------------- 65 (204)
T TIGR03587 14 GKE-YIDRNSRQSLV-AAKLAMFARALNR---L--------PKIASILELGANIGMNLAALKRLL--------------- 65 (204)
T ss_pred cch-hhhccccHHHH-HHHHHHHHHHHHh---c--------CCCCcEEEEecCCCHHHHHHHHhC---------------
Confidence 434 54444433333 3344555555543 1 234679999999998888773211
Q ss_pred cCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCCCCCCcceEEEccCcccccc
Q 017363 100 HQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLS 166 (373)
Q Consensus 100 ~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS 166 (373)
+..+++--|+..+-....=+.++. .-+.. ++... .+|++++|+|+++.+||+++
T Consensus 66 -------~~~~v~giDiS~~~l~~A~~~~~~--~~~~~---~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 66 -------PFKHIYGVEINEYAVEKAKAYLPN--INIIQ---GSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred -------CCCeEEEEECCHHHHHHHHhhCCC--CcEEE---eeccC-CCCCCCEEEEEECChhhhCC
Confidence 122566667654332222111221 12222 33344 57899999999999998864
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.63 E-value=0.00055 Score=62.62 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhhhccCCeEEEEec
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
++..|++..++-|+|||++++..+
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 344688899999999999998853
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.63 E-value=4.4e-05 Score=61.92 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=58.6
Q ss_pred EeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC--CCccceeeccCccc
Q 017363 66 LADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP--PSRKYFAFGVPGSF 143 (373)
Q Consensus 66 IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~--~~~~~f~~gvpgSF 143 (373)
|+|+|||+|.++..+.... +. .|+.++..-|+-.+-....=+... ..+--|..+.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~---------~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---------DA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------------------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHh---------hh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 7999999999999885442 00 122367777776544332222221 11223455544221
Q ss_pred ccCCCCCCcceEEEccCc-ccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 144 HGRLFPKSSLHFANSSSS-LNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 144 y~rlfP~~Svd~~~Ss~a-lHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
-++.+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 62 ---~~~~~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 62 ---PFSDGKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---HHHSSSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred ---cccCCCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 236779999999666 998762 256689999999999998
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.62 E-value=0.00062 Score=60.88 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=61.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC--CCccceeeccC
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP--PSRKYFAFGVP 140 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~--~~~~~f~~gvp 140 (373)
.-+|+|+|||+|..++.+.. + .|...|...|.-.+-....=+++. .... +..+.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~--------~--------------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~--v~~~~ 87 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK--------R--------------GPDAKVTAVDINPDALELAKRNAERNGLEN--VEVVQ 87 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH--------T--------------STCEEEEEEESBHHHHHHHHHHHHHTTCTT--EEEEE
T ss_pred CCeEEEecCChHHHHHHHHH--------h--------------CCCCEEEEEcCCHHHHHHHHHHHHhcCccc--ccccc
Confidence 46799999999999998832 1 123346666664333222222221 1111 22223
Q ss_pred cccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG 220 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 220 (373)
...++.+ +++++|+++|+=-+|+-...- ..-+..|++.-.+-|+||
T Consensus 88 ~d~~~~~-~~~~fD~Iv~NPP~~~~~~~~---------------------------------~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 88 SDLFEAL-PDGKFDLIVSNPPFHAGGDDG---------------------------------LDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp SSTTTTC-CTTCEEEEEE---SBTTSHCH---------------------------------HHHHHHHHHHHHHHEEEE
T ss_pred ccccccc-cccceeEEEEccchhcccccc---------------------------------hhhHHHHHHHHHHhccCC
Confidence 3344443 378999999987655533110 012346788888999999
Q ss_pred CeEEEEec
Q 017363 221 GLIVFVLF 228 (373)
Q Consensus 221 G~lvl~~~ 228 (373)
|.|+++.-
T Consensus 134 G~l~lv~~ 141 (170)
T PF05175_consen 134 GRLFLVIN 141 (170)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEee
Confidence 99988664
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.61 E-value=0.00037 Score=70.47 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcC----CCC--ccceee
Q 017363 64 FKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTM----PPS--RKYFAF 137 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l----~~~--~~~f~~ 137 (373)
-+|+|+|||+|..++.+.+ + .|..+|+..|...--....=.++ +.. +--|..
T Consensus 230 ~~VLDLGCGtGvi~i~la~--------~--------------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD--------K--------------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CeEEEEeccccHHHHHHHH--------h--------------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 5899999999998876622 1 23447777777531111111111 100 112222
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
+ ..+.. +++.++|+|+|+-.+|+...++.. ....+++.-.+-|
T Consensus 288 ~---D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~---------------------------------ia~~l~~~a~~~L 330 (378)
T PRK15001 288 N---NALSG-VEPFRFNAVLCNPPFHQQHALTDN---------------------------------VAWEMFHHARRCL 330 (378)
T ss_pred c---ccccc-CCCCCEEEEEECcCcccCccCCHH---------------------------------HHHHHHHHHHHhc
Confidence 2 22333 355789999999999985432211 1124676667889
Q ss_pred ccCCeEEEEe
Q 017363 218 VPGGLIVFVL 227 (373)
Q Consensus 218 ~pGG~lvl~~ 227 (373)
+|||.|+++.
T Consensus 331 kpGG~L~iV~ 340 (378)
T PRK15001 331 KINGELYIVA 340 (378)
T ss_pred ccCCEEEEEE
Confidence 9999999984
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.60 E-value=0.0012 Score=61.90 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHH
Q 017363 207 EAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIE 286 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie 286 (373)
..+++.-++-|+|||++++.......... .| |-|.-|.+|+++.+.
T Consensus 135 ~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----------------------~g------------Pp~~~~~~el~~~~~ 180 (218)
T PRK13255 135 ERYVQQLAALLPAGCRGLLVTLDYPQEEL----------------------AG------------PPFSVSDEEVEALYA 180 (218)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEeCCccC----------------------CC------------CCCCCCHHHHHHHhc
Confidence 36778888999999986665554332110 12 446789999999996
Q ss_pred hcCceEEeEEEEec
Q 017363 287 RNGCFRIERMDKLP 300 (373)
Q Consensus 287 ~~gsF~I~~le~~~ 300 (373)
.. |+|+.++...
T Consensus 181 ~~--~~i~~~~~~~ 192 (218)
T PRK13255 181 GC--FEIELLERQD 192 (218)
T ss_pred CC--ceEEEeeecc
Confidence 32 8988887543
No 72
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.59 E-value=0.0016 Score=64.28 Aligned_cols=29 Identities=10% Similarity=0.437 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHhcCceEEeEEEEecCC
Q 017363 273 LYFPTAEELKAIIERNGCFRIERMDKLPDP 302 (373)
Q Consensus 273 ~y~ps~eE~~~~ie~~gsF~I~~le~~~~~ 302 (373)
.|+.+.+|++.+++..| |+|...+.....
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~~~ 303 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTATQ 303 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEeecc
Confidence 36679999999999999 999887766533
No 73
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.55 E-value=0.0005 Score=65.49 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=73.7
Q ss_pred CCceEEeeecCCCCcccHHHHHH--------------HHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhh
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQN--------------IIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQ 126 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~ 126 (373)
+..-+|+|+|||.|..++.+.+. ..+..++....+ .-...++|+.-|+ +..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--------~l~~ri~v~~~Di-----~~~-- 107 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--------PLEERIQVIEADI-----KEF-- 107 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--------cchhceeEehhhH-----HHh--
Confidence 34799999999999999998654 222222222111 0122355555554 222
Q ss_pred cCCCCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcH
Q 017363 127 TMPPSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDT 206 (373)
Q Consensus 127 ~l~~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~ 206 (373)
.+-.+.+++|+|+|+ |+ |++-... ..+.+..+-.+-+..-++
T Consensus 108 ------------------~~~~~~~~fD~Ii~N---------PP---------yf~~~~~--~~~~~~~~~Ar~e~~~~l 149 (248)
T COG4123 108 ------------------LKALVFASFDLIICN---------PP---------YFKQGSR--LNENPLRAIARHEITLDL 149 (248)
T ss_pred ------------------hhcccccccCEEEeC---------CC---------CCCCccc--cCcChhhhhhhhhhcCCH
Confidence 223334589999986 32 2222222 234556666677788899
Q ss_pred HHHHHHHHhhhccCCeEEEEecc
Q 017363 207 EAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
..+++.-++-|||||++.++...
T Consensus 150 e~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 150 EDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred HHHHHHHHHHccCCCEEEEEecH
Confidence 99999999999999999887643
No 74
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.51 E-value=0.00031 Score=54.37 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=60.7
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHh---hcCCCCccceeeccCc
Q 017363 65 KLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLF---QTMPPSRKYFAFGVPG 141 (373)
Q Consensus 65 ~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf---~~l~~~~~~f~~gvpg 141 (373)
+|+|+|||.|.++..+.. .+..+++..|+..+-....- ......+..|..+..
T Consensus 1 ~ildig~G~G~~~~~~~~-----------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----------------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA- 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh-
Confidence 589999999998877632 01126777777544333222 111111222333322
Q ss_pred ccccCC-CCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC
Q 017363 142 SFHGRL-FPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG 220 (373)
Q Consensus 142 SFy~rl-fP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 220 (373)
.... .+.+++|+++++..+++.+ .+...+|+.-..-|+||
T Consensus 57 --~~~~~~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 57 --EELPPEADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPG 97 (107)
T ss_pred --hhhccccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCC
Confidence 2222 3567899999999999861 13446777777888999
Q ss_pred CeEEEE
Q 017363 221 GLIVFV 226 (373)
Q Consensus 221 G~lvl~ 226 (373)
|.+++.
T Consensus 98 g~~~~~ 103 (107)
T cd02440 98 GVLVLT 103 (107)
T ss_pred CEEEEE
Confidence 999886
No 75
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.50 E-value=0.00055 Score=61.98 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhhhccCCeEEEEecc
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
+...+|+.-.+-|+|||++++..+.
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4567889999999999999997543
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.48 E-value=0.00023 Score=58.78 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhccCCeEEEEec
Q 017363 207 EAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
..+++.-++.|+|||++++.+.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEec
Confidence 3688889999999999998763
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.45 E-value=0.00019 Score=71.58 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=63.1
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC--CccceeeccCc
Q 017363 64 FKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP--SRKYFAFGVPG 141 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~--~~~~f~~gvpg 141 (373)
-+|+|+|||+|..++.+.. + .|..+|...|....-....=.++.. ...-+. ++
T Consensus 198 g~VLDlGCG~G~ls~~la~--------~--------------~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~---~~ 252 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLAR--------H--------------SPKIRLTLSDVSAAALESSRATLAANGLEGEVF---AS 252 (342)
T ss_pred CeEEEeccCcCHHHHHHHH--------h--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE---Ec
Confidence 4799999999998876622 1 1234677777743211111111110 011122 22
Q ss_pred ccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 142 SFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 142 SFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
..+.. .++++|+++|+-.+||.-..- ..+...|++.-++-|+|||
T Consensus 253 D~~~~--~~~~fDlIvsNPPFH~g~~~~---------------------------------~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 253 NVFSD--IKGRFDMIISNPPFHDGIQTS---------------------------------LDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred ccccc--cCCCccEEEECCCccCCcccc---------------------------------HHHHHHHHHHHHHhcCcCC
Confidence 23332 357899999999999832110 1245678999999999999
Q ss_pred eEEEEec
Q 017363 222 LIVFVLF 228 (373)
Q Consensus 222 ~lvl~~~ 228 (373)
.|+++..
T Consensus 298 ~L~iVan 304 (342)
T PRK09489 298 ELRIVAN 304 (342)
T ss_pred EEEEEEe
Confidence 9988754
No 78
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.42 E-value=0.00082 Score=59.60 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEe
Q 017363 148 FPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 148 fP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
++++++|++++++++||+. |...+|+.-++-|||||+|++.-
T Consensus 40 ~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVV--------------------------------------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred CCCCCeeEEEecchhhcCC--------------------------------------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 5778999999999999974 34468888889999999999987
Q ss_pred ccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcc----cccCCHHHHHHHHHhcCceEEeE
Q 017363 228 FSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIP----LYFPTAEELKAIIERNGCFRIER 295 (373)
Q Consensus 228 ~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P----~y~ps~eE~~~~ie~~gsF~I~~ 295 (373)
++.++.... ...+..... .-+.--|.+... .+.+..- ..+++.+|+.+++++.| |+..+
T Consensus 82 ~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 82 FNKSNQSVT-----TFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred CCCCChHHH-----HHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 776543210 001100000 000000111100 1111111 25689999999999999 86433
No 79
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.42 E-value=0.0033 Score=58.99 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=70.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPG 141 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpg 141 (373)
+.-+|+|+|+|+|..+..+ .++ -|.+++..-|||..= ...+. .. =+.-+||
T Consensus 100 ~~~~vvDvGGG~G~~~~~l--------~~~--------------~P~l~~~v~Dlp~v~--~~~~~---~~--rv~~~~g 150 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIAL--------ARA--------------YPNLRATVFDLPEVI--EQAKE---AD--RVEFVPG 150 (241)
T ss_dssp TSSEEEEET-TTSHHHHHH--------HHH--------------STTSEEEEEE-HHHH--CCHHH---TT--TEEEEES
T ss_pred CccEEEeccCcchHHHHHH--------HHH--------------CCCCcceeeccHhhh--hcccc---cc--ccccccc
Confidence 4568999999999988777 222 356689999999521 11111 11 2344889
Q ss_pred ccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccC-
Q 017363 142 SFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPG- 220 (373)
Q Consensus 142 SFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG- 220 (373)
.|+ .-+|. .|+++-...||=.+. ++-..+|+.-++.|+||
T Consensus 151 d~f-~~~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~ 191 (241)
T PF00891_consen 151 DFF-DPLPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGK 191 (241)
T ss_dssp -TT-TCCSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECT
T ss_pred cHH-hhhcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 999 67777 999999999983231 24447999999999999
Q ss_pred -CeEEEEeccCCCC
Q 017363 221 -GLIVFVLFSLPNG 233 (373)
Q Consensus 221 -G~lvl~~~g~~~~ 233 (373)
|++++.=.-.++.
T Consensus 192 ~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 192 DGRLLIIEMVLPDD 205 (241)
T ss_dssp TEEEEEEEEEECSS
T ss_pred CCeEEEEeeccCCC
Confidence 9998887665544
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.41 E-value=0.0013 Score=59.39 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
...+|+|+|||+|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34689999999999998873
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.40 E-value=0.0015 Score=60.25 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.2
Q ss_pred CceEEeeecCCCCcccHHH
Q 017363 62 GTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~ 80 (373)
...+|+|+|||+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 4579999999999999754
No 82
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.40 E-value=0.0011 Score=59.38 Aligned_cols=124 Identities=13% Similarity=0.024 Sum_probs=65.2
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCccc
Q 017363 64 FKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSF 143 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSF 143 (373)
.+|+|+|||+|..++.+... .+ +|+..|+-..--...=+.+... .+-+..+-+.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~----------------------~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~ 75 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK----------------------GK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDL 75 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc----------------------CC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccc
Confidence 57999999999988876421 11 5666666432211111111100 00011122333
Q ss_pred ccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeE
Q 017363 144 HGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLI 223 (373)
Q Consensus 144 y~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 223 (373)
++. +.+++|+++|+..+|.....+.. .+....++..| .. -...+..||+.-.+-|+|||++
T Consensus 76 ~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~-------~~---------~~~~~~~~l~~~~~~Lk~gG~~ 136 (179)
T TIGR00537 76 FKG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG-------KD---------GRKVIDRFLDELPEILKEGGRV 136 (179)
T ss_pred ccc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC-------Cc---------hHHHHHHHHHhHHHhhCCCCEE
Confidence 442 24589999999998865432210 00000000000 00 0112457888888999999999
Q ss_pred EEEeccCC
Q 017363 224 VFVLFSLP 231 (373)
Q Consensus 224 vl~~~g~~ 231 (373)
++...+..
T Consensus 137 ~~~~~~~~ 144 (179)
T TIGR00537 137 QLIQSSLN 144 (179)
T ss_pred EEEEeccC
Confidence 99876544
No 83
>PRK04266 fibrillarin; Provisional
Probab=97.40 E-value=0.0013 Score=61.95 Aligned_cols=23 Identities=13% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHhhhccCCeEEEEeccC
Q 017363 208 AFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
.+|+.-++-|||||++++++..+
T Consensus 157 ~~L~~~~r~LKpGG~lvI~v~~~ 179 (226)
T PRK04266 157 IAIDNAEFFLKDGGYLLLAIKAR 179 (226)
T ss_pred HHHHHHHHhcCCCcEEEEEEecc
Confidence 35666678899999999987764
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.36 E-value=0.0018 Score=60.03 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
...+|+|+|||+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34799999999999997764
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.34 E-value=0.00063 Score=62.71 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.8
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~ 82 (373)
..+|+|+|||+|..|..+.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CCEEEEECcCccHHHHHHHH
Confidence 46899999999999977743
No 86
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.28 E-value=0.0009 Score=61.99 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=17.0
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
...+|+|+|||+|.+|..+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred CcCEEEEECCCccHHHHHHH
Confidence 34699999999999998763
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.25 E-value=0.0039 Score=56.91 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=31.8
Q ss_pred CceEEeeecCCCCcccHHHH--------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCC
Q 017363 62 GTFKLADFGCSVGPNTFIAV--------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHY 117 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp 117 (373)
+--++.|+|||||.-|+..+ ...++.+++.+.+-+ .+.+++.--|-|
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---------~~n~~vv~g~Ap 94 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---------VDNLEVVEGDAP 94 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---------CCcEEEEeccch
Confidence 34699999999999999887 335556666555442 234556655555
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0029 Score=58.94 Aligned_cols=167 Identities=19% Similarity=0.136 Sum_probs=81.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
.-+|+|+|||+|..++.+... . . -+++..|....-....-+++.... .-+..+-+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~---------~------------~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d 92 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA---------G------------A--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGD 92 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc---------C------------C--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECc
Confidence 368999999999988876321 0 0 146666664322111111110000 001122244
Q ss_pred cccCCCCCCcceEEEccCcccccccchhhhhcC-CCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 143 FHGRLFPKSSLHFANSSSSLNWLSKISKEILDS-RSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 143 Fy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~-~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
+.. .+|++++|+++++--.+..+... ..+. ....|+.| .. -..++..|++.-.+-|+|||
T Consensus 93 ~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~~----------~~~~~~~~l~~a~~~Lk~gG 153 (223)
T PRK14967 93 WAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------PD----------GRAVLDRLCDAAPALLAPGG 153 (223)
T ss_pred hhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------Cc----------HHHHHHHHHHHHHHhcCCCc
Confidence 444 35778999999975443322111 0000 00011111 00 01245678888888999999
Q ss_pred eEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcC
Q 017363 222 LIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNG 289 (373)
Q Consensus 222 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~g 289 (373)
++++......+. .+++..+...|+ .-+.+.+..+|+ .+..-.....+++.|
T Consensus 154 ~l~~~~~~~~~~---------------~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 154 SLLLVQSELSGV---------------ERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred EEEEEEecccCH---------------HHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 999775554211 122333334443 344444555563 332333445566776
No 89
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.22 E-value=0.0047 Score=57.27 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecC
Q 017363 36 DAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFND 115 (373)
Q Consensus 36 ~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nD 115 (373)
++.++-|.+.+++.++ ..+. +|+|+|||||--+..+... -|.+++-=+|
T Consensus 8 eRNk~pIl~vL~~~l~--------~~~~-~vLEiaSGtGqHa~~FA~~----------------------lP~l~WqPSD 56 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLP--------DSGT-RVLEIASGTGQHAVYFAQA----------------------LPHLTWQPSD 56 (204)
T ss_pred hhCHhHHHHHHHHHhC--------ccCc-eEEEEcCCccHHHHHHHHH----------------------CCCCEEcCCC
Confidence 4444555556655442 1222 8999999999887776322 3566788888
Q ss_pred CCCCchhhHhhcCC-----CC-ccc--------eeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCC
Q 017363 116 HYGNDFNTLFQTMP-----PS-RKY--------FAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWN 181 (373)
Q Consensus 116 Lp~NDFn~lf~~l~-----~~-~~~--------f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~n 181 (373)
...+-+.++-.-+. .- ++. .....+. .++.+++|.++|.+.+|-.+--
T Consensus 57 ~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~-----~~~~~~~D~i~~~N~lHI~p~~------------- 118 (204)
T PF06080_consen 57 PDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA-----PLSPESFDAIFCINMLHISPWS------------- 118 (204)
T ss_pred CChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc-----ccCCCCcceeeehhHHHhcCHH-------------
Confidence 88877766654321 10 111 1222111 1267899999999999985421
Q ss_pred CCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCC
Q 017363 182 KGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLI 261 (373)
Q Consensus 182 kg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli 261 (373)
.-..+++.-++-|+|||.|++.-+=..++...++. . ..+...|+ ..
T Consensus 119 -----------------------~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N----~~FD~sLr---~r--- 164 (204)
T PF06080_consen 119 -----------------------AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-N----AAFDASLR---SR--- 164 (204)
T ss_pred -----------------------HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-H----HHHHHHHh---cC---
Confidence 12357788889999999999988766655443322 1 22233333 11
Q ss_pred ChhhhcccCcccccCCHHHHHHHHHhcCceEEeE
Q 017363 262 DEEKVDSFNIPLYFPTAEELKAIIERNGCFRIER 295 (373)
Q Consensus 262 ~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~ 295 (373)
+.-|-.|..+++.++-...| ++.+.
T Consensus 165 --------dp~~GiRD~e~v~~lA~~~G-L~l~~ 189 (204)
T PF06080_consen 165 --------DPEWGIRDIEDVEALAAAHG-LELEE 189 (204)
T ss_pred --------CCCcCccCHHHHHHHHHHCC-CccCc
Confidence 22246689999999999999 65443
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.16 E-value=0.0018 Score=65.65 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC---Cccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---SRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~---~~~~f~~gv 139 (373)
.-+++|+|||+|..++.+... .|+..++--|.-..-...+-+.+.. .+-.++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~----------------------~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D 180 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN----------------------NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD 180 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh----------------------CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 348999999999988877422 1223444444433222222222110 111233333
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
..-+. ..+|++|+|.++.+....|..+.. .|+ -...||+.-++-|+|
T Consensus 181 A~~ll-~~~~~~s~D~I~lnFPdPW~KkrH-------------RRl-------------------v~~~fL~e~~RvLkp 227 (390)
T PRK14121 181 ARLLL-ELLPSNSVEKIFVHFPVPWDKKPH-------------RRV-------------------ISEDFLNEALRVLKP 227 (390)
T ss_pred HHHhh-hhCCCCceeEEEEeCCCCccccch-------------hhc-------------------cHHHHHHHHHHHcCC
Confidence 32222 357899999999988888833210 011 124789999999999
Q ss_pred CCeEEEEe
Q 017363 220 GGLIVFVL 227 (373)
Q Consensus 220 GG~lvl~~ 227 (373)
||.+.+.+
T Consensus 228 GG~l~l~T 235 (390)
T PRK14121 228 GGTLELRT 235 (390)
T ss_pred CcEEEEEE
Confidence 99998765
No 91
>PHA03411 putative methyltransferase; Provisional
Probab=97.13 E-value=0.0034 Score=60.80 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=69.2
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCccc
Q 017363 64 FKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSF 143 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSF 143 (373)
-+|+|+|||+|..++.+... . +..+|+..|+-. ++-.+.+..-+ +.-+..+..
T Consensus 66 grVLDLGcGsGilsl~la~r--------~--------------~~~~V~gVDisp-~al~~Ar~n~~-~v~~v~~D~--- 118 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR--------C--------------KPEKIVCVELNP-EFARIGKRLLP-EAEWITSDV--- 118 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh--------C--------------CCCEEEEEECCH-HHHHHHHHhCc-CCEEEECch---
Confidence 58999999999877765221 1 112677777754 22333332111 122333333
Q ss_pred ccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhh--cHHHHHHHHHhhhccCC
Q 017363 144 HGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKN--DTEAFLNARAHELVPGG 221 (373)
Q Consensus 144 y~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~--D~~~FL~~Ra~EL~pGG 221 (373)
.+ +.+..++|+++|+-.++++.... ..+ ...|+.|.. ..+ .+..||...+.=|+|+|
T Consensus 119 ~e-~~~~~kFDlIIsNPPF~~l~~~d--~~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G 177 (279)
T PHA03411 119 FE-FESNEKFDVVISNPPFGKINTTD--TKD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTG 177 (279)
T ss_pred hh-hcccCCCcEEEEcCCccccCchh--hhh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCc
Confidence 32 23457899999999999965221 111 012221110 001 25689999999999999
Q ss_pred eEEEEeccCC
Q 017363 222 LIVFVLFSLP 231 (373)
Q Consensus 222 ~lvl~~~g~~ 231 (373)
.+.+...|++
T Consensus 178 ~~~~~yss~~ 187 (279)
T PHA03411 178 SAGFAYSGRP 187 (279)
T ss_pred eEEEEEeccc
Confidence 8888755533
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.07 E-value=0.0019 Score=59.25 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=63.9
Q ss_pred CCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEE
Q 017363 147 LFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 147 lfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 226 (373)
-||++|+|.|+-+-+|+=+.+ |..+.. +-|+-|.+.+++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL~----------------------------------------EmlRVgr~~IVs 108 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVLE----------------------------------------EMLRVGRRAIVS 108 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHHH----------------------------------------HHHHhcCeEEEE
Confidence 489999999999999998764 544432 346778899988
Q ss_pred eccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccc------cCCHHHHHHHHHhcCceEEeEEEEec
Q 017363 227 LFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLY------FPTAEELKAIIERNGCFRIERMDKLP 300 (373)
Q Consensus 227 ~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y------~ps~eE~~~~ie~~gsF~I~~le~~~ 300 (373)
|+.-.. |..- ..|.-.|..+..+ .+..+|| +-|..+++++.++.| ++|++-..+.
T Consensus 109 FPNFg~------------W~~R----~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 109 FPNFGH------------WRNR----LQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ecChHH------------HHHH----HHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 875321 2111 2333446665443 3334444 469999999999998 8887766654
No 93
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.07 E-value=0.0011 Score=61.68 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=47.9
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCc-hhhHhhcCCCCccceeecc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGND-FNTLFQTMPPSRKYFAFGV 139 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~ND-Fn~lf~~l~~~~~~f~~gv 139 (373)
++..+|||+|||++..+..+ .. .+.|.-=||...+ += ..+=++-|
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~~-----------------~~~V~SfDLva~n~~V---------tacdia~v 116 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------PN-----------------KHKVHSFDLVAPNPRV---------TACDIANV 116 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----------S--------------------EEEEESS-SSTTE---------EES-TTS-
T ss_pred CCCEEEEECCCchHHHHHhc--------cc-----------------CceEEEeeccCCCCCE---------EEecCccC
Confidence 45689999999998777322 11 1245555665422 10 01112334
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhcc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVP 219 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 219 (373)
| ++++|+|+++.+-+|.= .||..||+--.+=|||
T Consensus 117 P-------L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~ 150 (219)
T PF05148_consen 117 P-------LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKP 150 (219)
T ss_dssp S---------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEE
T ss_pred c-------CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheecc
Confidence 4 69999999998877653 2778899999999999
Q ss_pred CCeEEEEe
Q 017363 220 GGLIVFVL 227 (373)
Q Consensus 220 GG~lvl~~ 227 (373)
||.|.+.=
T Consensus 151 ~G~L~IAE 158 (219)
T PF05148_consen 151 GGILKIAE 158 (219)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEE
Confidence 99998753
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.04 E-value=0.0067 Score=58.92 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhccCCeEEEEec
Q 017363 206 TEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
...|++.-.+-|+|||++++.+.
T Consensus 230 ~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45688888899999999998875
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.98 E-value=0.001 Score=62.27 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=65.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC---CCccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP---PSRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~gv 139 (373)
..+|+|+|||+|..++.+.... +..+++..|.-..-....=+.+. -.+--+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~----------------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--- 142 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER----------------------PDARVTAVDISPEALAVARKNAARLGLDNVTFL--- 142 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC----------------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE---
Confidence 4689999999998888774321 12256666654332222211111 0111122
Q ss_pred CcccccCCCCCCcceEEEccCcccccccc---hhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKI---SKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~---P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
.+.+.. .+|++++|+++|+--.+..+.. +..+.... | ..... + ......++..|++.-.+.
T Consensus 143 ~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e-~----~~~~~-~---------~~~~~~~~~~~i~~~~~~ 206 (251)
T TIGR03534 143 QSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHE-P----RLALF-G---------GEDGLDFYRRIIAQAPRL 206 (251)
T ss_pred ECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcC-C----HHHHc-C---------CCcHHHHHHHHHHHHHHh
Confidence 233333 3577899999997655543321 11111000 0 00000 0 011223566899999999
Q ss_pred hccCCeEEEEe
Q 017363 217 LVPGGLIVFVL 227 (373)
Q Consensus 217 L~pGG~lvl~~ 227 (373)
|+|||.+++..
T Consensus 207 L~~gG~~~~~~ 217 (251)
T TIGR03534 207 LKPGGWLLLEI 217 (251)
T ss_pred cccCCEEEEEE
Confidence 99999998854
No 96
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.93 E-value=0.002 Score=60.96 Aligned_cols=74 Identities=23% Similarity=0.187 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHH
Q 017363 207 EAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIE 286 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie 286 (373)
..|+++.++-+||||.|+++..-|.--.. ....-..+-+++ ++-.|.-+-++ +-.++|+...+.
T Consensus 141 ~~~~~~c~~lvkP~G~lf~STinrt~ka~------~~~i~~ae~vl~-~vP~gTH~~~k---------~irp~El~~~~~ 204 (243)
T COG2227 141 ESFLRACAKLVKPGGILFLSTINRTLKAY------LLAIIGAEYVLR-IVPKGTHDYRK---------FIKPAELIRWLL 204 (243)
T ss_pred HHHHHHHHHHcCCCcEEEEeccccCHHHH------HHHHHHHHHHHH-hcCCcchhHHH---------hcCHHHHHHhcc
Confidence 46999999999999999999987542100 001122233333 56666544333 235778888777
Q ss_pred hcCceEEeEEE
Q 017363 287 RNGCFRIERMD 297 (373)
Q Consensus 287 ~~gsF~I~~le 297 (373)
..+ |++....
T Consensus 205 ~~~-~~~~~~~ 214 (243)
T COG2227 205 GAN-LKIIDRK 214 (243)
T ss_pred cCC-ceEEeec
Confidence 766 6666554
No 97
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.92 E-value=0.00043 Score=71.40 Aligned_cols=106 Identities=22% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeecc
Q 017363 60 TCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGV 139 (373)
Q Consensus 60 ~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gv 139 (373)
.+...+++|+|||+|.....+++.=| ..+++-.+|--. .+.++ .. . +-+ -+.
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~~r~V---------------------~t~s~a~~d~~~-~qvqf-al-e--RGv--pa~ 166 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLLERNV---------------------TTMSFAPNDEHE-AQVQF-AL-E--RGV--PAM 166 (506)
T ss_pred CCceEEEEeccceeehhHHHHhhCCc---------------------eEEEcccccCCc-hhhhh-hh-h--cCc--chh
Confidence 46678899999999998887743221 122333332221 11111 11 1 111 011
Q ss_pred Cccc-ccCC-CCCCcceEEEccCccc-ccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 140 PGSF-HGRL-FPKSSLHFANSSSSLN-WLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 140 pgSF-y~rl-fP~~Svd~~~Ss~alH-WLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
-+++ -+|| ||++++|++||+-|+. |.+.- | + +|----+=
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--------------g-~-----------------------~l~evdRv 208 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--------------G-F-----------------------LLFEVDRV 208 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcc--------------c-c-----------------------eeehhhhh
Confidence 1122 2444 5999999999999986 85532 1 1 22222367
Q ss_pred hccCCeEEEEeccCC
Q 017363 217 LVPGGLIVFVLFSLP 231 (373)
Q Consensus 217 L~pGG~lvl~~~g~~ 231 (373)
|+|||+++++-+-..
T Consensus 209 LRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 209 LRPGGYFVLSGPPVY 223 (506)
T ss_pred hccCceEEecCCccc
Confidence 999999999887543
No 98
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.89 E-value=0.0045 Score=57.87 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=79.3
Q ss_pred CCceEEeeecCCCCcccHHHH-------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc
Q 017363 61 CGTFKLADFGCSVGPNTFIAV-------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT 127 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~ 127 (373)
.+..+.+|.|||.|+-|-.++ ...++..++.....
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-------------------------------- 101 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-------------------------------- 101 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG--------------------------------
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc--------------------------------
Confidence 458999999999999997553 33444333322110
Q ss_pred CCCCccceeeccCcccccCCCCC-CcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcH
Q 017363 128 MPPSRKYFAFGVPGSFHGRLFPK-SSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDT 206 (373)
Q Consensus 128 l~~~~~~f~~gvpgSFy~rlfP~-~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~ 206 (373)
.+.-..+|..|. +..-|+ +..|++|.-||+..|.. .|+
T Consensus 102 ~~~v~~~~~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dl 140 (218)
T PF05891_consen 102 NPRVGEFYCVGL-----QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDL 140 (218)
T ss_dssp GCCEEEEEES-G-----GG----TT-EEEEEEES-GGGS-H------------------------------------HHH
T ss_pred CCCcceEEecCH-----hhccCCCCcEeEEEehHhhccCCH------------------------------------HHH
Confidence 001134566665 334464 79999999999888773 389
Q ss_pred HHHHHHHHhhhccCCeEEEEe-ccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHH
Q 017363 207 EAFLNARAHELVPGGLIVFVL-FSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAII 285 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~-~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~i 285 (373)
-.||+...+.|+|||.+++== .+.......+. .++- ..||.+.++.++
T Consensus 141 v~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~------------------~DsS-------------vTRs~~~~~~lF 189 (218)
T PF05891_consen 141 VAFLKRCKQALKPNGVIVVKENVSSSGFDEFDE------------------EDSS-------------VTRSDEHFRELF 189 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEESSSEEEEET------------------TTTE-------------EEEEHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEecCCCCCCcccCC------------------ccCe-------------eecCHHHHHHHH
Confidence 999999999999999888732 22211101110 1122 578999999999
Q ss_pred HhcCceEEeEEEEe
Q 017363 286 ERNGCFRIERMDKL 299 (373)
Q Consensus 286 e~~gsF~I~~le~~ 299 (373)
+++| ++|.+-+..
T Consensus 190 ~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 190 KQAG-LRLVKEEKQ 202 (218)
T ss_dssp HHCT--EEEEEEE-
T ss_pred HHcC-CEEEEeccc
Confidence 9999 887776654
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.88 E-value=0.0034 Score=51.61 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.1
Q ss_pred cHHHHHHHHHhhhccCCeEEEEec
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
+...|++.-.+-|+|||.+++.+.
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 566899999999999999999864
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=96.82 E-value=0.032 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhccCCeEEEEec
Q 017363 206 TEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
+..|++.-.+-|+|||.+++...
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEc
Confidence 56789999999999999988753
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.80 E-value=0.0043 Score=60.27 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHhhhccCCeEEEEeccC
Q 017363 208 AFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
.++..-.+-|+|||+++++....
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCcH
Confidence 45556668899999999876653
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.75 E-value=0.011 Score=56.27 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.6
Q ss_pred ceEEeeecCCCCcccHHH
Q 017363 63 TFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~ 80 (373)
.-+|+|+|||+|..++.+
T Consensus 120 ~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCEEEEeCCcHHHHHHHH
Confidence 468999999999776644
No 103
>PLN03075 nicotianamine synthase; Provisional
Probab=96.70 E-value=0.0091 Score=58.46 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=60.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC------CCccce
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP------PSRKYF 135 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~------~~~~~f 135 (373)
.+-+|||+|||.|+.|.+++..- . .|.-++.--|.-. +-..+.+.+- ..+--|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~------~--------------~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH------H--------------LPTTSFHNFDIDP-SANDVARRLVSSDPDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh------c--------------CCCCEEEEEeCCH-HHHHHHHHHhhhccCccCCcEE
Confidence 56899999999999877664321 0 1111344444432 1122222221 112346
Q ss_pred eeccCcccccCCCC-CCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 017363 136 AFGVPGSFHGRLFP-KSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARA 214 (373)
Q Consensus 136 ~~gvpgSFy~rlfP-~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 214 (373)
..+.... +.+ .+.+|++|+. ++|-..+.+ =...|+.-+
T Consensus 182 ~~~Da~~----~~~~l~~FDlVF~~-ALi~~dk~~------------------------------------k~~vL~~l~ 220 (296)
T PLN03075 182 HTADVMD----VTESLKEYDVVFLA-ALVGMDKEE------------------------------------KVKVIEHLG 220 (296)
T ss_pred EECchhh----cccccCCcCEEEEe-ccccccccc------------------------------------HHHHHHHHH
Confidence 5555433 222 3679999999 665443221 124677777
Q ss_pred hhhccCCeEEEEe
Q 017363 215 HELVPGGLIVFVL 227 (373)
Q Consensus 215 ~EL~pGG~lvl~~ 227 (373)
+-|+|||.+++-+
T Consensus 221 ~~LkPGG~Lvlr~ 233 (296)
T PLN03075 221 KHMAPGALLMLRS 233 (296)
T ss_pred HhcCCCcEEEEec
Confidence 8999999999887
No 104
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.68 E-value=0.0057 Score=60.84 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=34.3
Q ss_pred CcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 151 SSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 151 ~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
..+|+|-+-.|||..=.- ++-.+.||+.-++-|+|||+|+.+++.
T Consensus 144 ~~FDvVScQFalHY~Fes----------------------------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFES----------------------------------EEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp S-EEEEEEES-GGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCcceeehHHHHHHhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 589999999999984321 123347999999999999999999974
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.66 E-value=0.0072 Score=59.45 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhccCCeEEEEec
Q 017363 207 EAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
..|++.-.+-|+|||++++...
T Consensus 243 ~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 243 RRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 4588888888999999998754
No 106
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.65 E-value=0.042 Score=54.64 Aligned_cols=196 Identities=19% Similarity=0.188 Sum_probs=115.8
Q ss_pred hhcCcccc-ccCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHH
Q 017363 7 NVLPGSFP-MVGGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNII 85 (373)
Q Consensus 7 ~~~~~~~~-M~gG~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii 85 (373)
++...+.. |-||-|..+|.-+-..|+.. .....++.+.+.+.+. . | ...-..+|.|-|.|..+-.+++
T Consensus 129 ~~~~~~~G~~l~~~~~~~~~~~~~~~~sm-~~l~~~~~~~il~~~~-G-f-----~~v~~avDvGgGiG~v~k~ll~--- 197 (342)
T KOG3178|consen 129 DAFATAHGMMLGGYGGADERFSKDFNGSM-SFLSTLVMKKILEVYT-G-F-----KGVNVAVDVGGGIGRVLKNLLS--- 197 (342)
T ss_pred cCCccccchhhhhhcccccccHHHHHHHH-HHHHHHHHHhhhhhhc-c-c-----ccCceEEEcCCcHhHHHHHHHH---
Confidence 44556666 67776655554444444443 3333344433333221 1 1 3578899999999998877744
Q ss_pred HHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccce---eeccCcccccCCCCCCcceEEEccCcc
Q 017363 86 EAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYF---AFGVPGSFHGRLFPKSSLHFANSSSSL 162 (373)
Q Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f---~~gvpgSFy~rlfP~~Svd~~~Ss~al 162 (373)
++ |.+..+-=|+|.=. .. ..++ +--+.|-+++- .|++- ++|.-|+|
T Consensus 198 -----~f--------------p~ik~infdlp~v~-----~~----a~~~~~gV~~v~gdmfq~-~P~~d--aI~mkWiL 246 (342)
T KOG3178|consen 198 -----KY--------------PHIKGINFDLPFVL-----AA----APYLAPGVEHVAGDMFQD-TPKGD--AIWMKWIL 246 (342)
T ss_pred -----hC--------------CCCceeecCHHHHH-----hh----hhhhcCCcceeccccccc-CCCcC--eEEEEeec
Confidence 22 33455555665311 11 1122 34455666777 77765 99999999
Q ss_pred cccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccC--CC
Q 017363 163 NWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMID--SN 240 (373)
Q Consensus 163 HWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~--~~ 240 (373)
|-+. .+|...||+..++-|+|||.+++.=.-.+++...+. ..
T Consensus 247 hdwt------------------------------------DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~ 290 (342)
T KOG3178|consen 247 HDWT------------------------------------DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSS 290 (342)
T ss_pred ccCC------------------------------------hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccc
Confidence 8422 248889999999999999999887553332221111 11
Q ss_pred chhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEEE
Q 017363 241 GGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMDK 298 (373)
Q Consensus 241 ~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le~ 298 (373)
.....+++..+.. .-|+ -|+.+|++..+.++| |.+-.+-.
T Consensus 291 v~~~~d~lm~~~~---~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~ 330 (342)
T KOG3178|consen 291 VTRDMDLLMLTQT---SGGK--------------ERTLKEFQALLPEEG-FPVCMVAL 330 (342)
T ss_pred eeehhHHHHHHHh---ccce--------------eccHHHHHhcchhhc-CceeEEEe
Confidence 2223344444332 3364 689999999999999 87654443
No 107
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.008 Score=55.86 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=89.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHh-hcC----CCCccceee
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLF-QTM----PPSRKYFAF 137 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf-~~l----~~~~~~f~~ 137 (373)
-.-++++|||+|+|=-.. . . .|--.|.+-|=-.|- -... ++. |..-.+|+.
T Consensus 77 K~~vLEvgcGtG~Nfkfy------------~-~----------~p~~svt~lDpn~~m-ee~~~ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY------------P-W----------KPINSVTCLDPNEKM-EEIADKSAAEKKPLQVERFVV 132 (252)
T ss_pred ccceEEecccCCCCcccc------------c-C----------CCCceEEEeCCcHHH-HHHHHHHHhhccCcceEEEEe
Confidence 466799999999995433 0 0 122255555533222 2221 111 111235888
Q ss_pred ccCcccccCCC--CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHh
Q 017363 138 GVPGSFHGRLF--PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAH 215 (373)
Q Consensus 138 gvpgSFy~rlf--P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 215 (373)
|.+ +++. |+.|+|.+++..+|.=. +|-..-|+.-.+
T Consensus 133 a~g----e~l~~l~d~s~DtVV~TlvLCSv--------------------------------------e~~~k~L~e~~r 170 (252)
T KOG4300|consen 133 ADG----ENLPQLADGSYDTVVCTLVLCSV--------------------------------------EDPVKQLNEVRR 170 (252)
T ss_pred ech----hcCcccccCCeeeEEEEEEEecc--------------------------------------CCHHHHHHHHHH
Confidence 887 5555 99999999988766421 233355666678
Q ss_pred hhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeE
Q 017363 216 ELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIER 295 (373)
Q Consensus 216 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~ 295 (373)
-|+|||++++.=-|+..-.. ...+++...+-+-.+...|-. ..+ |.-+.+++.. |++..
T Consensus 171 lLRpgG~iifiEHva~~y~~-----~n~i~q~v~ep~~~~~~dGC~------------ltr---d~~e~Leda~-f~~~~ 229 (252)
T KOG4300|consen 171 LLRPGGRIIFIEHVAGEYGF-----WNRILQQVAEPLWHLESDGCV------------LTR---DTGELLEDAE-FSIDS 229 (252)
T ss_pred hcCCCcEEEEEecccccchH-----HHHHHHHHhchhhheeccceE------------Eeh---hHHHHhhhcc-cccch
Confidence 99999999998777664321 223444444444445566631 222 3334566655 88888
Q ss_pred EEEecCC
Q 017363 296 MDKLPDP 302 (373)
Q Consensus 296 le~~~~~ 302 (373)
.+.+...
T Consensus 230 ~kr~~~~ 236 (252)
T KOG4300|consen 230 CKRFNFG 236 (252)
T ss_pred hhcccCC
Confidence 7766543
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.53 E-value=0.007 Score=58.62 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.6
Q ss_pred cHHHHHHHHHhhhccCCeEEEEecc
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
+...++..-.+-|+|||.|++.+..
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECc
Confidence 4557888888899999999888753
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.48 E-value=0.0071 Score=57.57 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhhhccCCeEEEEe
Q 017363 205 DTEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
++..|++.-.+-|+|||++++..
T Consensus 216 ~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 216 FYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHhcccCCEEEEEE
Confidence 55678888889999999999855
No 110
>PRK00811 spermidine synthase; Provisional
Probab=96.44 E-value=0.015 Score=56.54 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc-CC--------CC
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT-MP--------PS 131 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~-l~--------~~ 131 (373)
+++-+|+|+|||+|..+..++.. +..-+|...|+-.+= -.+.+. ++ ..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~----------------------~~~~~V~~VEid~~v-v~~a~~~~~~~~~~~~~d~ 131 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH----------------------PSVEKITLVEIDERV-VEVCRKYLPEIAGGAYDDP 131 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC----------------------CCCCEEEEEeCCHHH-HHHHHHHhHHhccccccCC
Confidence 35679999999999998776321 000144444443211 111111 11 11
Q ss_pred ccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHH
Q 017363 132 RKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLN 211 (373)
Q Consensus 132 ~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~ 211 (373)
+--+..+.+..|-.+ +++++|++++-.+-+|. .+.. -|. ..|++
T Consensus 132 rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~~--~~~~-------------------------l~t-------~ef~~ 175 (283)
T PRK00811 132 RVELVIGDGIKFVAE--TENSFDVIIVDSTDPVG--PAEG-------------------------LFT-------KEFYE 175 (283)
T ss_pred ceEEEECchHHHHhh--CCCcccEEEECCCCCCC--chhh-------------------------hhH-------HHHHH
Confidence 223556666555444 56789999997765551 1111 111 36888
Q ss_pred HHHhhhccCCeEEEEe
Q 017363 212 ARAHELVPGGLIVFVL 227 (373)
Q Consensus 212 ~Ra~EL~pGG~lvl~~ 227 (373)
.-.+-|+|||+|++..
T Consensus 176 ~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 176 NCKRALKEDGIFVAQS 191 (283)
T ss_pred HHHHhcCCCcEEEEeC
Confidence 8889999999998753
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.37 E-value=0.024 Score=58.46 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=71.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC---Cccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---SRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~---~~~~f~~gv 139 (373)
.-+|+|+|||+|..|+.+.+.. .. .-+|+-.|+-..-...+=+.+.. .+-.+..+.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~--------~~-------------~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~D 309 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM--------QN-------------RGQITAVDRYPQKLEKIRSHASALGITIIETIEGD 309 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh--------CC-------------CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 3689999999999998774322 10 11677777765444333222211 112344454
Q ss_pred CcccccCCCCCCcceEEEc----cCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHh
Q 017363 140 PGSFHGRLFPKSSLHFANS----SSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAH 215 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~S----s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 215 (373)
... +.|++++|.++. +..-+|- +.|+.... ..++..+. ..+....+|..-++
T Consensus 310 a~~----~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~---------------~~~~~~~~----l~~~q~~iL~~a~~ 365 (445)
T PRK14904 310 ARS----FSPEEQPDAILLDAPCTGTGVLG-RRAELRWK---------------LTPEKLAE----LVGLQAELLDHAAS 365 (445)
T ss_pred ccc----cccCCCCCEEEEcCCCCCcchhh-cCcchhhc---------------CCHHHHHH----HHHHHHHHHHHHHH
Confidence 433 336678999983 3333332 23322110 11222222 23355679999999
Q ss_pred hhccCCeEEEEeccCC
Q 017363 216 ELVPGGLIVFVLFSLP 231 (373)
Q Consensus 216 EL~pGG~lvl~~~g~~ 231 (373)
-|+|||+|+.++....
T Consensus 366 ~lkpgG~lvystcs~~ 381 (445)
T PRK14904 366 LLKPGGVLVYATCSIE 381 (445)
T ss_pred hcCCCcEEEEEeCCCC
Confidence 9999999999887653
No 112
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.35 E-value=0.0091 Score=57.19 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEe
Q 017363 148 FPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 148 fP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
++++|+|+++.+-+|.= .||..|++--.+=|+|||.+.+.=
T Consensus 224 l~d~svDvaV~CLSLMg---------------------------------------tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG---------------------------------------TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CccCcccEEEeeHhhhc---------------------------------------ccHHHHHHHHHHHhccCceEEEEe
Confidence 68999999988766642 277889999999999999998753
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.31 E-value=0.045 Score=56.17 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=65.8
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC--CccceeeccC
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP--SRKYFAFGVP 140 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~--~~~~f~~gvp 140 (373)
.-+|+|+|||+|.-|+.+.+.. . .-.|+-.|.-..--..+=+.+.. ....+..+..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~--------~--------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA--------P--------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc--------C--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 4689999999999998774432 0 01566666654322222122211 0112333333
Q ss_pred cccccCCCCCCcceEEEccC---cccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 141 GSFHGRLFPKSSLHFANSSS---SLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~---alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
... ...++++++|.+++.. ...-+.+.|... |. ..++..+ .+.+....+|..-++-|
T Consensus 303 ~~~-~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~-------~~--------~~~~~l~----~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 303 RDP-AQWWDGQPFDRILLDAPCSATGVIRRHPDIK-------WL--------RRPEDIA----ALAALQSEILDALWPLL 362 (427)
T ss_pred ccc-hhhcccCCCCEEEECCCCCcccccccCcccc-------cc--------CCHHHHH----HHHHHHHHHHHHHHHhc
Confidence 211 1224567899998432 222222333211 11 0122222 22345567898888999
Q ss_pred ccCCeEEEEecc
Q 017363 218 VPGGLIVFVLFS 229 (373)
Q Consensus 218 ~pGG~lvl~~~g 229 (373)
+|||+|+.++..
T Consensus 363 kpGG~lvystcs 374 (427)
T PRK10901 363 KPGGTLLYATCS 374 (427)
T ss_pred CCCCEEEEEeCC
Confidence 999999988764
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.31 E-value=0.019 Score=53.52 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=15.2
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
-.+|+|+|||+|.+|.++.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4799999999999998874
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.29 E-value=0.015 Score=59.87 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=74.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC---Cccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---SRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~---~~~~f~~gv 139 (373)
.-+|+|+|||+|.-|+.+.... . +.-+|+-.|+..+--..+=+.+.. ..-.+..+.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------~-------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~D 296 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------K-------------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIAD 296 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------C-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc
Confidence 3589999999999998874322 1 112677777754333222222211 111233443
Q ss_pred CcccccCCCCCCcceEEEc---cCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 140 PGSFHGRLFPKSSLHFANS---SSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
...+- . +.++++|.|++ ++.+..+.+.|..... .+++.. .+..+.....|..-++-
T Consensus 297 a~~l~-~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 297 AERLT-E-YVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDF----KKLSEIQLRIVSQAWKL 355 (431)
T ss_pred hhhhh-h-hhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHH----HHHHHHHHHHHHHHHHh
Confidence 32221 0 23567899986 5667777776654321 112222 23344557889999999
Q ss_pred hccCCeEEEEeccCC
Q 017363 217 LVPGGLIVFVLFSLP 231 (373)
Q Consensus 217 L~pGG~lvl~~~g~~ 231 (373)
|+|||+|+.++....
T Consensus 356 LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 356 LEKGGILLYSTCTVT 370 (431)
T ss_pred cCCCCEEEEEECCCC
Confidence 999999999988754
No 116
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.24 E-value=0.016 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhccCCeEEEEec
Q 017363 206 TEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
...+|+.-.+-|+|||++++...
T Consensus 124 ~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 124 LKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HHHHHHHHHHHcCCCcEEEEEee
Confidence 34577777789999999987553
No 117
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.024 Score=52.78 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=17.5
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
...+|+|+|||||.+|..+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 45899999999999998773
No 118
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.13 E-value=0.077 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhhhccCCeEEEEecc
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
++..+|+.-.+-|+|||+|++....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4557788777889999999998753
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.90 E-value=0.046 Score=56.08 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=71.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCc-cceeeccCc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSR-KYFAFGVPG 141 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~-~~f~~gvpg 141 (373)
..+|+|+|||+|.-|+.+...+ . .-+|+-.|.-.+-...+-+++.... .+-+..+.+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~--------~--------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~ 296 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA--------P--------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG 296 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc--------C--------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 3699999999999999774322 1 1157777775444333333332110 111111111
Q ss_pred cccc--CCCCCCcceEEEc---cCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 142 SFHG--RLFPKSSLHFANS---SSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 142 SFy~--rlfP~~Svd~~~S---s~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
.-.+ ...+.+++|.+++ ++++.-+.+.|+... . . .++..+ +..+.-..+|..=++-
T Consensus 297 d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-------~-------~-~~~~~~----~l~~lQ~~lL~~a~~~ 357 (426)
T TIGR00563 297 DGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW-------L-------R-KPRDIA----ELAELQSEILDAIWPL 357 (426)
T ss_pred ccccccccccccccCEEEEcCCCCCCcccccCcchhh-------c-------C-CHHHHH----HHHHHHHHHHHHHHHh
Confidence 1111 1125678999986 455555555664321 1 1 122222 2233456788888899
Q ss_pred hccCCeEEEEeccCC
Q 017363 217 LVPGGLIVFVLFSLP 231 (373)
Q Consensus 217 L~pGG~lvl~~~g~~ 231 (373)
|+|||+|+.++..-.
T Consensus 358 LkpgG~lvystcs~~ 372 (426)
T TIGR00563 358 LKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCcEEEEEeCCCC
Confidence 999999999987653
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.89 E-value=0.018 Score=60.52 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=63.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhh-cCCCCc-cceeeccC
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQ-TMPPSR-KYFAFGVP 140 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~-~l~~~~-~~f~~gvp 140 (373)
..+|+|+|||+|..++.+.... |..+|+..|+...- -.+.+ ++.... .--+.-+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~----------------------p~~~v~avDis~~a-l~~A~~N~~~~~l~~~v~~~~ 195 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL----------------------PNANVIATDISLDA-IEVAKSNAIKYEVTDRIQIIH 195 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC----------------------CCCeEEEEECCHHH-HHHHHHHHHHcCCccceeeee
Confidence 4689999999999998773321 22367777774311 11111 110000 00111223
Q ss_pred cccccCCCCCCcceEEEccCcccccccchhh---hhcC-CCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 141 GSFHGRLFPKSSLHFANSSSSLNWLSKISKE---ILDS-RSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 141 gSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~---~~~~-~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
+++++. +|.+++|+++|+--....+..+.. +.+. ...++- +.+.-.+ .+..+++.-.+-
T Consensus 196 ~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~--------gg~dGl~--------~~~~il~~a~~~ 258 (506)
T PRK01544 196 SNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALF--------AEEDGLQ--------AYFIIAENAKQF 258 (506)
T ss_pred cchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhc--------CCccHHH--------HHHHHHHHHHHh
Confidence 444433 356789999998544443322211 1100 000000 0111122 244688888889
Q ss_pred hccCCeEEEEe
Q 017363 217 LVPGGLIVFVL 227 (373)
Q Consensus 217 L~pGG~lvl~~ 227 (373)
|+|||.+++..
T Consensus 259 L~~gG~l~lEi 269 (506)
T PRK01544 259 LKPNGKIILEI 269 (506)
T ss_pred ccCCCEEEEEE
Confidence 99999999875
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.88 E-value=0.039 Score=56.89 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=65.9
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC---CCccceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP---PSRKYFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~gv 139 (373)
.-+|+|+|||+|.-|+.+.+.. . +.-+|+-.|+-.+--..+-+++. -..--+..+.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------~-------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D 309 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------K-------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALD 309 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------C-------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3689999999999999774432 0 11156667765433222222221 1111233333
Q ss_pred CcccccCCCCCCcceEEEcc---CcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 140 PGSFHGRLFPKSSLHFANSS---SSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss---~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
...+- .-++ +++|++++. +.+..+++.|.... .+ .+...+ ...+--..+|+.-.+-
T Consensus 310 ~~~~~-~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~~--------~~~~~~----~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 310 ARKVH-EKFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------NK--------TKEDIE----SLQEIQLEILESVAQY 368 (444)
T ss_pred ccccc-chhc-ccCCEEEEcCCCCCCeeeccCcchhh-------cC--------CHHHHH----HHHHHHHHHHHHHHHH
Confidence 32211 1123 679999874 33444444443221 11 111111 1222335688888899
Q ss_pred hccCCeEEEEecc
Q 017363 217 LVPGGLIVFVLFS 229 (373)
Q Consensus 217 L~pGG~lvl~~~g 229 (373)
|+|||+|+.++..
T Consensus 369 LkpGG~lvystcs 381 (444)
T PRK14902 369 LKKGGILVYSTCT 381 (444)
T ss_pred cCCCCEEEEEcCC
Confidence 9999999976654
No 122
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.62 E-value=0.036 Score=56.76 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhccCCeEEEEe
Q 017363 206 TEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
+.++++.-.+-|+|||.+++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE
Confidence 4467777778899999988765
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.02 Score=56.17 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.5
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
+..+++|+|||||-.|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 46899999999999998774
No 124
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.44 E-value=0.19 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhccCCeEEEEeccCC
Q 017363 206 TEAFLNARAHELVPGGLIVFVLFSLP 231 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~g~~ 231 (373)
...+|+.-++-|+|||++++.++...
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 34688888889999999999987643
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.38 E-value=0.083 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 204 NDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
+.-..+|..-++-|||||+||.++..
T Consensus 361 ~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 361 PLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34578899999999999999987755
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.081 Score=51.82 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=59.3
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhc---C--CCCcc--cee
Q 017363 64 FKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQT---M--PPSRK--YFA 136 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~---l--~~~~~--~f~ 136 (373)
.+|||+|||-|..++.+.+. .|..++.+.|. |+..+=.. + ..... +|.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~----------------------~p~~~vtmvDv---n~~Av~~ar~Nl~~N~~~~~~v~~ 214 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKK----------------------SPQAKLTLVDV---NARAVESARKNLAANGVENTEVWA 214 (300)
T ss_pred CcEEEeCCCccHHHHHHHHh----------------------CCCCeEEEEec---CHHHHHHHHHhHHHcCCCccEEEE
Confidence 39999999999999887321 23456666665 22222111 0 01111 233
Q ss_pred eccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 137 FGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 137 ~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
+-+ |+.+.. ++|+++|+=-+|==.++- ..+. .+++..=++-
T Consensus 215 s~~----~~~v~~--kfd~IisNPPfh~G~~v~----------------------~~~~-----------~~~i~~A~~~ 255 (300)
T COG2813 215 SNL----YEPVEG--KFDLIISNPPFHAGKAVV----------------------HSLA-----------QEIIAAAARH 255 (300)
T ss_pred ecc----cccccc--cccEEEeCCCccCCcchh----------------------HHHH-----------HHHHHHHHHh
Confidence 222 455555 899999885555211110 0001 1577777889
Q ss_pred hccCCeEEEEecc
Q 017363 217 LVPGGLIVFVLFS 229 (373)
Q Consensus 217 L~pGG~lvl~~~g 229 (373)
|++||.|.++.-|
T Consensus 256 L~~gGeL~iVan~ 268 (300)
T COG2813 256 LKPGGELWIVANR 268 (300)
T ss_pred hccCCEEEEEEcC
Confidence 9999999988774
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.28 E-value=0.02 Score=52.68 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=65.7
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC---CCccceeeccCc
Q 017363 65 KLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP---PSRKYFAFGVPG 141 (373)
Q Consensus 65 ~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~---~~~~~f~~gvpg 141 (373)
.++|+|||.|...+.... . .|+..++--|.-.+-.....+.+. -.+-.++.+...
T Consensus 20 l~lEIG~G~G~~l~~~A~--------~--------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~ 77 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--------R--------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR 77 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--------H--------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT
T ss_pred eEEEecCCCCHHHHHHHH--------H--------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH
Confidence 999999999998876621 1 234456666665433333322221 123356677777
Q ss_pred ccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 142 SFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 142 SFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
.+...++|++|++-++-++.==|-.+-- .|-|+. . ..||..-++-|+|||
T Consensus 78 ~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----------~krRl~----~---------------~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 78 ELLRRLFPPGSVDRIYINFPDPWPKKRH-----------HKRRLV----N---------------PEFLELLARVLKPGG 127 (195)
T ss_dssp THHHHHSTTTSEEEEEEES-----SGGG-----------GGGSTT----S---------------HHHHHHHHHHEEEEE
T ss_pred HHHhhcccCCchheEEEeCCCCCcccch-----------hhhhcC----C---------------chHHHHHHHHcCCCC
Confidence 7788899999999999888776744221 111221 1 158888889999999
Q ss_pred eEEEEe
Q 017363 222 LIVFVL 227 (373)
Q Consensus 222 ~lvl~~ 227 (373)
.+.+.+
T Consensus 128 ~l~~~T 133 (195)
T PF02390_consen 128 ELYFAT 133 (195)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 886543
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.23 E-value=0.042 Score=54.49 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=16.7
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
.-+|+|+|||+|.+|..+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCEEEEEeCCccHHHHHHH
Confidence 4689999999999998874
No 129
>PRK04457 spermidine synthase; Provisional
Probab=95.20 E-value=0.12 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHHHHhhhccCCeEEEEeccCC
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLP 231 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~ 231 (373)
.|++.-.+-|+|||+++++..+++
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 688888889999999999877643
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.01 E-value=0.13 Score=49.50 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHhhhccCCeEEEE
Q 017363 208 AFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~ 226 (373)
.|++.-++-|+|||++++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 6788888999999999987
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.93 E-value=0.061 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhccCCeEEEEec
Q 017363 206 TEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
+..++..=.+-|+|||++++...
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 44677777888999999998864
No 132
>PRK03612 spermidine synthase; Provisional
Probab=94.82 E-value=0.094 Score=55.31 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHH
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIE 286 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie 286 (373)
.|++.-.+-|+|||++++.... +... -+.+..+.+.|.+.|. .-..-..++|.| .++--.+.
T Consensus 396 ef~~~~~~~L~pgG~lv~~~~~-~~~~----------~~~~~~i~~~l~~~gf--~v~~~~~~vps~----g~w~f~~a 457 (521)
T PRK03612 396 EFYRLLKRRLAPDGLLVVQSTS-PYFA----------PKAFWSIEATLEAAGL--ATTPYHVNVPSF----GEWGFVLA 457 (521)
T ss_pred HHHHHHHHhcCCCeEEEEecCC-cccc----------hHHHHHHHHHHHHcCC--EEEEEEeCCCCc----chhHHHee
Confidence 4777777889999999987532 1110 1334455556666676 222223455666 45555554
No 133
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.70 E-value=0.12 Score=48.86 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=44.4
Q ss_pred cHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHH
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAI 284 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ 284 (373)
++..++-.-+.-|+|||.|.++.=.-++... . .+.-..+ |..+..=+++.
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------f---~l~ps~R--------------------yAH~~~YVr~~ 252 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-------F---VLGPSQR--------------------YAHSESYVRAL 252 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCCC-------e---ecchhhh--------------------hccchHHHHHH
Confidence 5667888889999999999998743322210 0 0111112 78888889999
Q ss_pred HHhcCceEEeEEEEe
Q 017363 285 IERNGCFRIERMDKL 299 (373)
Q Consensus 285 ie~~gsF~I~~le~~ 299 (373)
++..| |+|..++-.
T Consensus 253 l~~~G-l~~i~~~~t 266 (287)
T COG4976 253 LAASG-LEVIAIEDT 266 (287)
T ss_pred HHhcC-ceEEEeecc
Confidence 99999 988877744
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=94.63 E-value=0.1 Score=50.02 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=22.2
Q ss_pred hhcHHHHHHHHHhhhccCCeEEEEeccC
Q 017363 203 KNDTEAFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 203 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
.+....+|+.=++-|+|||+|+.++...
T Consensus 175 ~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 175 SALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3445668999999999999999887654
No 135
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.27 E-value=0.13 Score=50.85 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=43.9
Q ss_pred ccceeeccCcccccCCC-----CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcH
Q 017363 132 RKYFAFGVPGSFHGRLF-----PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDT 206 (373)
Q Consensus 132 ~~~f~~gvpgSFy~rlf-----P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~ 206 (373)
...|++|. +|+++|. ++-++|++=|=.|+|+-=.- ..-.
T Consensus 173 ~a~f~~~D--c~~~~l~d~~e~~dp~fDivScQF~~HYaFet----------------------------------ee~a 216 (389)
T KOG1975|consen 173 TAVFIAAD--CFKERLMDLLEFKDPRFDIVSCQFAFHYAFET----------------------------------EESA 216 (389)
T ss_pred eeEEEEec--cchhHHHHhccCCCCCcceeeeeeeEeeeecc----------------------------------HHHH
Confidence 44566665 5666542 44459999999999972100 0112
Q ss_pred HHHHHHHHhhhccCCeEEEEeccC
Q 017363 207 EAFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
..+|+.-++-|+|||.|+-+++..
T Consensus 217 r~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEecCcH
Confidence 368999999999999999988753
No 136
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.22 E-value=0.052 Score=52.62 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=42.8
Q ss_pred cCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEE
Q 017363 145 GRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIV 224 (373)
Q Consensus 145 ~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 224 (373)
.-.+++.|+|...|.+.+||||.---. ...|+.-.+.|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR-----------------------------------~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERR-----------------------------------ERALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHH-----------------------------------HHHHHHHHHHhcCCCceE
Confidence 455789999999999999999943200 134566668999999999
Q ss_pred EEeccCCCCCC
Q 017363 225 FVLFSLPNGVP 235 (373)
Q Consensus 225 l~~~g~~~~~~ 235 (373)
+...+......
T Consensus 141 vyvwa~~q~~~ 151 (293)
T KOG1331|consen 141 VYVWALEQHQS 151 (293)
T ss_pred EEEehhhccCc
Confidence 99988765544
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.21 E-value=0.13 Score=45.58 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.3
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~ 82 (373)
.-+|+|+|||+|..|..+++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred cCEEEEECCCccHHHHHHHh
Confidence 35899999999999998854
No 138
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=93.69 E-value=1 Score=43.80 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=68.5
Q ss_pred eEEeeecCCCCcccHHHHH--------------HHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC
Q 017363 64 FKLADFGCSVGPNTFIAVQ--------------NIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP 129 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~ 129 (373)
-.|+|+|||+|.-|+.++. ..|.-..+.+...+ -.--|.|.++|+.+--|+..-
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--------l~g~i~v~~~~me~d~~~~~~---- 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--------LSGRIEVIHNIMESDASDEHP---- 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--------hcCceEEEecccccccccccc----
Confidence 4799999999999998873 33444444444322 123468888888765544331
Q ss_pred CCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHH--------H
Q 017363 130 PSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSA--------Q 201 (373)
Q Consensus 130 ~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~--------Q 201 (373)
.+.+.+|+.+|+ |+-+.+.+-+ ...|+|. .|.. -
T Consensus 218 ------------------l~~~~~dllvsN---------PPYI~~dD~~----------~l~~eV~-~yEp~lALdGg~e 259 (328)
T KOG2904|consen 218 ------------------LLEGKIDLLVSN---------PPYIRKDDNR----------QLKPEVR-LYEPKLALDGGLE 259 (328)
T ss_pred ------------------cccCceeEEecC---------CCcccccchh----------hcCchhe-ecCchhhhccccc
Confidence 455667777765 2222111100 0001110 0000 0
Q ss_pred HhhcHHHHHHHHHhhhccCCeEEEEeccCCCC
Q 017363 202 FKNDTEAFLNARAHELVPGGLIVFVLFSLPNG 233 (373)
Q Consensus 202 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 233 (373)
.-.-+..|+..-.+-|+|||.+.+...++...
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 00123467778888999999999999998654
No 139
>PLN02366 spermidine synthase
Probab=93.64 E-value=0.16 Score=50.10 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=62.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCC--chh-hHhhc----CCCCcc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGN--DFN-TLFQT----MPPSRK 133 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~N--DFn-~lf~~----l~~~~~ 133 (373)
+++-+|+++|||.|.....++. . ++.-+|..-|+... ++. ..|.. +...+-
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk--------~--------------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv 147 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR--------H--------------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV 147 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh--------C--------------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce
Confidence 3567999999999996554421 1 01114555554431 111 11111 112233
Q ss_pred ceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHH
Q 017363 134 YFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNAR 213 (373)
Q Consensus 134 ~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~R 213 (373)
-++.+++..|-... |++++|++++-.+-+|- .+.. -|. ..|++.-
T Consensus 148 ~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~--~~~~-------------------------L~t-------~ef~~~~ 192 (308)
T PLN02366 148 NLHIGDGVEFLKNA-PEGTYDAIIVDSSDPVG--PAQE-------------------------LFE-------KPFFESV 192 (308)
T ss_pred EEEEChHHHHHhhc-cCCCCCEEEEcCCCCCC--chhh-------------------------hhH-------HHHHHHH
Confidence 46667776666543 56789999986655541 1111 111 2688888
Q ss_pred HhhhccCCeEEEEe
Q 017363 214 AHELVPGGLIVFVL 227 (373)
Q Consensus 214 a~EL~pGG~lvl~~ 227 (373)
.+-|+|||.|+...
T Consensus 193 ~~~L~pgGvlv~q~ 206 (308)
T PLN02366 193 ARALRPGGVVCTQA 206 (308)
T ss_pred HHhcCCCcEEEECc
Confidence 88999999997654
No 140
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.20 E-value=0.25 Score=51.99 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCc
Q 017363 28 SSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSAL 107 (373)
Q Consensus 28 S~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~ 107 (373)
+..|++.++...|.+.-..+. .+ ..+.-.++|+|||.|..++..... .|
T Consensus 322 ~~~q~~~~e~~~p~~~i~~ek-----lf----~~~~p~~lEIG~G~G~~~~~~A~~----------------------~p 370 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEK-----LV----NEKRKVFLEIGFGMGEHFINQAKM----------------------NP 370 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHH-----hC----CCCCceEEEECCCchHHHHHHHHh----------------------CC
Confidence 347888888887776522211 12 234678999999999988876311 12
Q ss_pred eeEEEecCCCCCchhhHhhcCCC--CccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCce
Q 017363 108 EFQVFFNDHYGNDFNTLFQTMPP--SRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSI 185 (373)
Q Consensus 108 ~~~v~~nDLp~NDFn~lf~~l~~--~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I 185 (373)
+..++--|.-.+-...+.+.... -.++.+...--.+....||++|||-+|-++.==|-.+- ..|.|+
T Consensus 371 ~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkr-----------h~krRl 439 (506)
T PRK01544 371 DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNK-----------QKKKRI 439 (506)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCC-----------Cccccc
Confidence 22333333333222222222110 11221111112234567899999999999888883321 112233
Q ss_pred eecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEE
Q 017363 186 ICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 186 ~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 226 (373)
. . ..||+.-+.-|+|||.+.+.
T Consensus 440 ~----~---------------~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 440 F----N---------------KERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred c----C---------------HHHHHHHHHhcCCCCEEEEE
Confidence 2 1 15888888999999999764
No 141
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.16 E-value=0.3 Score=46.62 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=52.2
Q ss_pred CCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 150 KSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 150 ~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
..-+|+++|.+--.| ||....+ .-+.+||+.-+.-|.|||+||+.=-
T Consensus 164 ~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvEPQ- 210 (288)
T KOG2899|consen 164 QPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVEPQ- 210 (288)
T ss_pred cccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEcCC-
Confidence 456888888888888 3433333 3567899999999999999998421
Q ss_pred CCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhc
Q 017363 230 LPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERN 288 (373)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~ 288 (373)
-|+....+-+-...-+. |.=-.+-.++.+..++.+.
T Consensus 211 --------------pWksY~kaar~~e~~~~---------ny~~i~lkp~~f~~~l~q~ 246 (288)
T KOG2899|consen 211 --------------PWKSYKKAARRSEKLAA---------NYFKIFLKPEDFEDWLNQI 246 (288)
T ss_pred --------------chHHHHHHHHHHHHhhc---------CccceecCHHHHHhhhhhh
Confidence 24544444332222121 1111345688888888775
No 142
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=93.08 E-value=0.24 Score=49.32 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred CceEEeeecCCCCcccHHHH------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC
Q 017363 62 GTFKLADFGCSVGPNTFIAV------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP 129 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~ 129 (373)
+.-+|+|.|||+|..|+... +.|++..++....+ -|.-.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N------------------------~~~~i----- 110 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDN------------------------GLEDV----- 110 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhc------------------------Cccce-----
Confidence 45799999999999999875 33433333332221 11111
Q ss_pred CCccceeeccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHH
Q 017363 130 PSRKYFAFGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAF 209 (373)
Q Consensus 130 ~~~~~f~~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~F 209 (373)
+--+.|.=.+-.+|...+|+++|=|-=+||-. +.=+...
T Consensus 111 ------i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-----------------------------------EsMldsV 149 (346)
T KOG1499|consen 111 ------ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY-----------------------------------ESMLDSV 149 (346)
T ss_pred ------EEEeecceEEEecCccceeEEeehhhhHHHHH-----------------------------------hhhhhhh
Confidence 11222333344567889999999887777541 2234467
Q ss_pred HHHHHhhhccCCeEE
Q 017363 210 LNARAHELVPGGLIV 224 (373)
Q Consensus 210 L~~Ra~EL~pGG~lv 224 (373)
|-+|-+=|+|||.++
T Consensus 150 l~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 150 LYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhhhccCCCceEc
Confidence 889999999999985
No 143
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=92.65 E-value=0.16 Score=45.57 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=18.3
Q ss_pred cHHHHHHHHHhhhccCCeEEEEeccCCC
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFSLPN 232 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 232 (373)
.+..+++.-..-|+|+|.+++...-|.+
T Consensus 134 ~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 134 LFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp GHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 4446777777889999997777766643
No 144
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.40 E-value=6.2 Score=38.80 Aligned_cols=61 Identities=23% Similarity=0.408 Sum_probs=39.7
Q ss_pred HHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccc--cCCHHHHHHHH
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLY--FPTAEELKAII 285 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y--~ps~eE~~~~i 285 (373)
.-|+--+.-|.|||.|+.+. .+-. | -.+.|..+|...- +|. ||- .||..|+.+++
T Consensus 230 ~sl~gl~~al~pgG~lIyTg--QPwH-P--------Qle~IAr~LtsHr-~g~-----------~WvMRrRsq~EmD~Lv 286 (311)
T PF12147_consen 230 RSLAGLARALEPGGYLIYTG--QPWH-P--------QLEMIARVLTSHR-DGK-----------AWVMRRRSQAEMDQLV 286 (311)
T ss_pred HHHHHHHHHhCCCcEEEEcC--CCCC-c--------chHHHHHHHhccc-CCC-----------ceEEEecCHHHHHHHH
Confidence 34666778899999998653 2211 1 2355565555332 232 444 57999999999
Q ss_pred HhcCceE
Q 017363 286 ERNGCFR 292 (373)
Q Consensus 286 e~~gsF~ 292 (373)
+..| |+
T Consensus 287 ~~aG-F~ 292 (311)
T PF12147_consen 287 EAAG-FE 292 (311)
T ss_pred HHcC-Cc
Confidence 9999 75
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=92.17 E-value=0.39 Score=45.71 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=40.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGS 142 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgS 142 (373)
..+|+|+|||+|..++.+..... . .+..+|..-|+-.+-....-+.++ +.-+.. +.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~--------~-----------~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~---~D 105 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM--------Y-----------AKPREIVCVELNHTYYKLGKRIVP--EATWIN---AD 105 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc--------c-----------CCCcEEEEEECCHHHHHHHHhhcc--CCEEEE---cc
Confidence 46999999999998887643321 0 112356666665443333322222 122232 23
Q ss_pred cccCCCCCCcceEEEccCc
Q 017363 143 FHGRLFPKSSLHFANSSSS 161 (373)
Q Consensus 143 Fy~rlfP~~Svd~~~Ss~a 161 (373)
|.... +++++|+|+|+==
T Consensus 106 ~~~~~-~~~~FDlIIsNPP 123 (241)
T PHA03412 106 ALTTE-FDTLFDMAISNPP 123 (241)
T ss_pred hhccc-ccCCccEEEECCC
Confidence 33222 2568999998733
No 146
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.12 E-value=0.36 Score=45.60 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=41.3
Q ss_pred eccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 137 FGVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 137 ~gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
.+..--+...++|++|+|=++-++.==|-.+- -+|.||.. ..||+.-++-
T Consensus 104 ~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkR-----------H~KRRl~~-------------------~~fl~~~a~~ 153 (227)
T COG0220 104 CGDAVEVLDYLIPDGSLDKIYINFPDPWPKKR-----------HHKRRLTQ-------------------PEFLKLYARK 153 (227)
T ss_pred cCCHHHHHHhcCCCCCeeEEEEECCCCCCCcc-----------ccccccCC-------------------HHHHHHHHHH
Confidence 34444445677788899999988877773322 13334432 1588888899
Q ss_pred hccCCeEEEEe
Q 017363 217 LVPGGLIVFVL 227 (373)
Q Consensus 217 L~pGG~lvl~~ 227 (373)
|+|||.+.+.+
T Consensus 154 Lk~gG~l~~aT 164 (227)
T COG0220 154 LKPGGVLHFAT 164 (227)
T ss_pred ccCCCEEEEEe
Confidence 99999997754
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.95 E-value=0.93 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred hhcHHHHHHHHHhhhccCCeEEEEec
Q 017363 203 KNDTEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 203 ~~D~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
.+|+..++..-.+-|+|||.++++..
T Consensus 632 ~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 632 QRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 34666778777888999999987653
No 148
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.90 E-value=0.21 Score=48.08 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=56.8
Q ss_pred CcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEeccC
Q 017363 151 SSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 151 ~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
...|.+.|+.||.=.++-+ + .+.+-|++-+.-|||||.|++...-.
T Consensus 157 ~~~D~v~s~fcLE~a~~d~--------------------------~--------~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDL--------------------------D--------EYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SSEEEEEEESSHHHH-SSH--------------------------H--------HHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchhhhhhhHHHHHHcCCH--------------------------H--------HHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 4699999999998766443 1 23346778889999999999988754
Q ss_pred CCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcCceEEeEEE
Q 017363 231 PNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNGCFRIERMD 297 (373)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~gsF~I~~le 297 (373)
.+.-. + |- -.+|...-+.+.++++|++.| |+|+..+
T Consensus 203 ~t~Y~--------------------v--G~--------~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 203 STYYM--------------------V--GG--------HKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp -SEEE--------------------E--TT--------EEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred ceeEE--------------------E--CC--------EecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 32211 1 11 126778889999999999999 9999888
No 149
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.82 E-value=0.17 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhccCCeEEEEec
Q 017363 206 TEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
..+|+..=..-|+|||.+++...
T Consensus 217 ~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 217 YRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHhhHHHcCCCcEEEEEEC
Confidence 44688888889999999988765
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.53 E-value=0.66 Score=47.85 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.6
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 3689999999999998875
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=91.53 E-value=0.29 Score=49.48 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHhhhccCCeEEEE
Q 017363 208 AFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~ 226 (373)
.|++.-.+-|+|||+|++.
T Consensus 249 EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 249 ELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 6888888899999999887
No 152
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.44 E-value=0.42 Score=45.05 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=17.1
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
++-+|+|+||++|.-++.+.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la 87 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTA 87 (234)
T ss_pred CCCEEEEecCcccHHHHHHH
Confidence 46799999999999888774
No 153
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=91.35 E-value=2.1 Score=40.40 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=17.0
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
.-||++.|||.|.+...+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA 62 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFL 62 (226)
T ss_pred CCeEEEeCCCChHHHHHHH
Confidence 4699999999999999884
No 154
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=91.26 E-value=6.2 Score=36.92 Aligned_cols=142 Identities=21% Similarity=0.299 Sum_probs=76.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC------Cccc-
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP------SRKY- 134 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~------~~~~- 134 (373)
..-||+.-|||.|.....+.+. -++|+--|+...=-...|+.-.. ....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~------------------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~ 92 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ------------------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFK 92 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT------------------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEE
T ss_pred CCCeEEEeCCCChHHHHHHHHC------------------------CCeEEEEecCHHHHHHHHHHhccCCCccccccee
Confidence 4579999999999998877411 02444444443322222222110 0000
Q ss_pred -----eeeccCcccccCCCCC--CcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHH
Q 017363 135 -----FAFGVPGSFHGRLFPK--SSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTE 207 (373)
Q Consensus 135 -----f~~gvpgSFy~rlfP~--~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~ 207 (373)
-+.-+-|.||. +-|. +++|+++=.++|+=| | |+..+.|.
T Consensus 93 ~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---p----------------------p~~R~~Ya-------- 138 (218)
T PF05724_consen 93 RYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---P----------------------PEMRERYA-------- 138 (218)
T ss_dssp EETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS--------------------------GGGHHHHH--------
T ss_pred eecCCceEEEEccccc-CChhhcCCceEEEEecccccC---C----------------------HHHHHHHH--------
Confidence 12233345555 2222 247998888888763 3 23334444
Q ss_pred HHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHh
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIER 287 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~ 287 (373)
+.-++-|+|||++++.++-.+... .+| |=|.=+.+|+++++.
T Consensus 139 ---~~l~~ll~p~g~~lLi~l~~~~~~----------------------~~G------------PPf~v~~~ev~~l~~- 180 (218)
T PF05724_consen 139 ---QQLASLLKPGGRGLLITLEYPQGE----------------------MEG------------PPFSVTEEEVRELFG- 180 (218)
T ss_dssp ---HHHHHCEEEEEEEEEEEEES-CSC----------------------SSS------------SS----HHHHHHHHT-
T ss_pred ---HHHHHHhCCCCcEEEEEEEcCCcC----------------------CCC------------cCCCCCHHHHHHHhc-
Confidence 456678999999655555332111 012 335567899999999
Q ss_pred cCceEEeEEEEec
Q 017363 288 NGCFRIERMDKLP 300 (373)
Q Consensus 288 ~gsF~I~~le~~~ 300 (373)
.+ |+|+.++..+
T Consensus 181 ~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 181 PG-FEIEELEEED 192 (218)
T ss_dssp TT-EEEEEEEEEE
T ss_pred CC-cEEEEEeccc
Confidence 43 9999999754
No 155
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.89 E-value=1.3 Score=44.08 Aligned_cols=119 Identities=14% Similarity=0.232 Sum_probs=66.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCC-C-Cccceeecc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMP-P-SRKYFAFGV 139 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~-~-~~~~f~~gv 139 (373)
...+|+|+|||+|.=|..+++.+. .. ...+.++=-|+...--....+.|. . .+.+=+.|+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~----~~--------------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l 137 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE----RQ--------------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGL 137 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH----hc--------------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEE
Confidence 345899999999999999877763 11 112467777877544444444454 1 234445566
Q ss_pred CcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceee-----cCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIIC-----SGLVKGVSEAYSAQFKNDTEAFLNARA 214 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~-----~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 214 (373)
-|.|.. .++||.+ |.. .. +..-++. .+-+|+... .||+.-+
T Consensus 138 ~gdy~~---------------~l~~l~~-~~~-~~------~~r~~~flGSsiGNf~~~ea~-----------~fL~~~~ 183 (319)
T TIGR03439 138 LGTYDD---------------GLAWLKR-PEN-RS------RPTTILWLGSSIGNFSRPEAA-----------AFLAGFL 183 (319)
T ss_pred EecHHH---------------HHhhccc-ccc-cC------CccEEEEeCccccCCCHHHHH-----------HHHHHHH
Confidence 665543 4455533 100 00 0001111 122333222 5776666
Q ss_pred h-hhccCCeEEEEeccCCC
Q 017363 215 H-ELVPGGLIVFVLFSLPN 232 (373)
Q Consensus 215 ~-EL~pGG~lvl~~~g~~~ 232 (373)
+ -|.|||.|++.+=+..+
T Consensus 184 ~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 184 ATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred HhhCCCCCEEEEecCCCCC
Confidence 6 89999999998755443
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.87 E-value=0.77 Score=44.89 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhccCCeEEE
Q 017363 207 EAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl 225 (373)
...++.-++.|+|||+|++
T Consensus 242 ~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 242 ERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 3577788899999998744
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=90.17 E-value=0.31 Score=46.94 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=17.6
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~ 82 (373)
..+|+|+|||+|..|..+.+
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred cCeEEEeCCCccHHHHHHHH
Confidence 46899999999999998865
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=89.01 E-value=2.8 Score=42.86 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.5
Q ss_pred HhhcHHHHHHHHHhhhccCCeEEEEe
Q 017363 202 FKNDTEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 202 ~~~D~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
..+++..++..-.+-|+|||.+++..
T Consensus 314 ~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 314 ACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34567778888888899999998765
No 159
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=87.84 E-value=2.1 Score=39.74 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=15.7
Q ss_pred hcHHHHHHHHHhhhccCCeEEE
Q 017363 204 NDTEAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl 225 (373)
.|+..-|..+..+||+|-++|.
T Consensus 135 ~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 3666788889999999977663
No 160
>PLN02672 methionine S-methyltransferase
Probab=87.35 E-value=0.94 Score=51.75 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhccCCeEEEEeccCC
Q 017363 207 EAFLNARAHELVPGGLIVFVLFSLP 231 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~~g~~ 231 (373)
.+++..-.+-|+|||.|++.+....
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccH
Confidence 3577777889999999999997643
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=86.87 E-value=1.2 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.4
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~i 84 (373)
+..+|+|+|||+|+.+...++..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTT
T ss_pred cceEEEEeCCCccHHHHHHHHHH
Confidence 36899999999999998876543
No 162
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.68 E-value=9.5 Score=36.97 Aligned_cols=115 Identities=22% Similarity=0.385 Sum_probs=66.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCch--------h--hHhhcCCCC
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDF--------N--TLFQTMPPS 131 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDF--------n--~lf~~l~~~ 131 (373)
+++||--.|||||-=.-.+.-.+.+.... . .+..++|+-.|+-..-- . .+++.+|..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~----~---------~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~ 162 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK----L---------AGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPE 162 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc----c---------cCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHH
Confidence 68999999999997555443333222221 0 13568999999863211 0 112222221
Q ss_pred --ccceeeccCcccc--------------cCCC---CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCH
Q 017363 132 --RKYFAFGVPGSFH--------------GRLF---PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVK 192 (373)
Q Consensus 132 --~~~f~~gvpgSFy--------------~rlf---P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~ 192 (373)
+.||.-+..|+|- +-+. ..+-+|++||=+.|=.+++
T Consensus 163 ~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~------------------------- 217 (268)
T COG1352 163 LLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE------------------------- 217 (268)
T ss_pred HHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-------------------------
Confidence 3677777666442 1111 2244666666666555442
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEE
Q 017363 193 GVSEAYSAQFKNDTEAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 193 ~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 225 (373)
+++ .+.|+.=+.-|+|||.|++
T Consensus 218 ~~q-----------~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 218 ETQ-----------ERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHH-----------HHHHHHHHHHhCCCCEEEE
Confidence 111 2567777889999999965
No 163
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=84.18 E-value=14 Score=35.48 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=33.2
Q ss_pred HHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhc
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVD 267 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d 267 (373)
..|..-++.|+|||.+++..++ .+.+...+..|.+.|.+..+.++
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~---------------veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPT---------------VEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCC---------------HHHHHHHHHHHHhcCccchhhhe
Confidence 5778888999999999887765 45566666777777876655443
No 164
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=83.31 E-value=5.3 Score=38.54 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=41.7
Q ss_pred ceEEeeecCCCCcccHHHH------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHh
Q 017363 63 TFKLADFGCSVGPNTFIAV------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLF 125 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf 125 (373)
.-+|+|+|+|.|..|..++ ..++..++++.. +...++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-----------~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-----------PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc-----------cccceEEEeCchhcCcchhhc
Confidence 6799999999999999998 455666666542 245689999999999998875
No 165
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=82.68 E-value=0.36 Score=40.46 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=32.2
Q ss_pred ceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEEec
Q 017363 153 LHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFVLF 228 (373)
Q Consensus 153 vd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 228 (373)
+|++.+.+...| ||+.. ...-+.+||+.-+.-|+|||+|++.--
T Consensus 2 yDvilclSVtkW--------------------IHLn~------------GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHLNW------------GDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHH--------------------HHHHH------------HHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEE--------------------EEecC------------cCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 689999999999 33322 223566899999999999999999753
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.62 E-value=2.2 Score=39.31 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=34.0
Q ss_pred ceEEeeecCCCCcccHHHH-------------HHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHh
Q 017363 63 TFKLADFGCSVGPNTFIAV-------------QNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLF 125 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf 125 (373)
.-+|+|+|||+|..++... ...++..++.+.... -.+.++-.|.. ||+.-|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~----------g~v~f~~~dv~--~~~~~~ 109 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL----------GDVEFVVADVS--DFRGKF 109 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC----------CceEEEEcchh--hcCCcc
Confidence 4579999999999999765 456666666665422 24566666663 444443
No 167
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=82.37 E-value=6.6 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=17.7
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
+..+++|+|.|+|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 57899999999999998873
No 168
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.86 E-value=5.5 Score=37.43 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=15.9
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
-.+.+|+|.|||..|-.+-
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 3789999999999987653
No 169
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=81.47 E-value=9 Score=36.01 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=59.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCc
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPG 141 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpg 141 (373)
..++++|+||=+..|.+.. ..-|.|.--||-+.+ ..+.+ -
T Consensus 51 ~~lrlLEVGals~~N~~s~-------------------------~~~fdvt~IDLns~~-~~I~q--------------q 90 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-------------------------SGWFDVTRIDLNSQH-PGILQ--------------Q 90 (219)
T ss_pred ccceEEeecccCCCCcccc-------------------------cCceeeEEeecCCCC-CCcee--------------e
Confidence 4699999999988776644 123456666665432 11110 1
Q ss_pred ccccCCC---CCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhc
Q 017363 142 SFHGRLF---PKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELV 218 (373)
Q Consensus 142 SFy~rlf---P~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 218 (373)
.|.++-+ +.+++|+|.+|-.|.+ ||.+.. =-.-|+.-.+=|+
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNf---VP~p~~--------------------------------RG~Ml~r~~~fL~ 135 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNF---VPDPKQ--------------------------------RGEMLRRAHKFLK 135 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEee---CCCHHH--------------------------------HHHHHHHHHHHhC
Confidence 2344434 4789999999999988 553321 0134566667899
Q ss_pred cCCe-----EEEEecc
Q 017363 219 PGGL-----IVFVLFS 229 (373)
Q Consensus 219 pGG~-----lvl~~~g 229 (373)
|+|. |+++++-
T Consensus 136 ~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 136 PPGLSLFPSLFLVLPL 151 (219)
T ss_pred CCCccCcceEEEEeCc
Confidence 9999 8888763
No 170
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=81.17 E-value=1.7 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.6
Q ss_pred eEEeeecCCCCcccHHH
Q 017363 64 FKLADFGCSVGPNTFIA 80 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~ 80 (373)
-+|+|+|||||..++..
T Consensus 163 ~~vLDvG~GSGILaiaA 179 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAA 179 (295)
T ss_dssp SEEEEES-TTSHHHHHH
T ss_pred CEEEEeCCcHHHHHHHH
Confidence 49999999999999877
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=80.74 E-value=4.2 Score=40.46 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=15.6
Q ss_pred CCceEEeeecCCCCcccHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~ 80 (373)
+...+|+|+|||+|.-..++
T Consensus 113 ~~~~~vLDIGtGag~I~~lL 132 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLI 132 (321)
T ss_pred CCCceEEEecCCccHHHHHH
Confidence 35689999999999665554
No 172
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=80.30 E-value=2.1 Score=36.82 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.5
Q ss_pred CCceEEeeecCCCCcccHHHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~ 82 (373)
....+|+|+|||.|..|+.+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 5689999999999999998854
No 173
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=80.29 E-value=2.2 Score=41.94 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.7
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
.-+|+|+|||+|..|+.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la 192 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA 192 (315)
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 3689999999999998875
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=79.51 E-value=1 Score=42.61 Aligned_cols=21 Identities=33% Similarity=0.224 Sum_probs=17.7
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~ 82 (373)
+.-+|+|+|||+|..|..+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHH
Confidence 456999999999999997743
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=79.40 E-value=2.3 Score=41.63 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=32.7
Q ss_pred ceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCc
Q 017363 63 TFKLADFGCSVGPNTFIAVQ------------NIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGND 120 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~ND 120 (373)
.-+|+|+|||.|..|..++. ..++.+++++...+ ....++++..|....|
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~--------~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP--------LASKLEVIEGDALKTE 98 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC--------CCCcEEEEECCHhhhc
Confidence 45899999999999998874 34555555543211 1234677777775433
No 176
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=79.08 E-value=8.6 Score=30.17 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=19.9
Q ss_pred HHHHHHHhhhccCCeEEEEeccCCCC
Q 017363 208 AFLNARAHELVPGGLIVFVLFSLPNG 233 (373)
Q Consensus 208 ~FL~~Ra~EL~pGG~lvl~~~g~~~~ 233 (373)
..+....+-|+|||.+++........
T Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 136 KALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 35566667799999999998876644
No 177
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=78.94 E-value=24 Score=32.67 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.2
Q ss_pred eEEeeecCCCCcccHHH
Q 017363 64 FKLADFGCSVGPNTFIA 80 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~ 80 (373)
-+|+|||||-|..-+.+
T Consensus 69 ~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQL 85 (227)
T ss_pred cceeeccCCchHHHHHH
Confidence 39999999988654444
No 178
>PLN02823 spermine synthase
Probab=75.49 E-value=11 Score=37.55 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=16.2
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~ 81 (373)
+++-+|+.+|+|.|.....++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 356789999999997766553
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=75.03 E-value=3.3 Score=39.20 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=17.9
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~ 82 (373)
+.-+|+|+|||+|..|..+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 356899999999999998854
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=74.58 E-value=1.8 Score=41.24 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=17.6
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~ 82 (373)
.-+|+|+|||+|..|..+.+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999998864
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=72.95 E-value=14 Score=35.36 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=16.1
Q ss_pred ceEEeeecCCCCcccHHHHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~i 84 (373)
--+|+|-|.|||..|..+...+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHh
Confidence 4799999999999999987444
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=72.29 E-value=16 Score=38.22 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=68.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCC--cc-ceeecc
Q 017363 63 TFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPS--RK-YFAFGV 139 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~--~~-~f~~gv 139 (373)
..+|+|++||.|.=|..+.+.+ ... =.|+-||.-.+=...|-+++... .+ ......
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l--------~~~-------------g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D 172 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALM--------NNQ-------------GAIVANEYSASRVKVLHANISRCGVSNVALTHFD 172 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------CCC-------------CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 4699999999999998874432 111 16777887766655565554321 12 222333
Q ss_pred CcccccCCCCCCcceEEE----ccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHh
Q 017363 140 PGSFHGRLFPKSSLHFAN----SSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAH 215 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~----Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 215 (373)
+..+ ...+| .++|.|. ||..=.| .+-|..... -+++..+ +..+--..+|..-++
T Consensus 173 ~~~~-~~~~~-~~fD~ILvDaPCSG~G~~-rk~p~~~~~---------------~s~~~v~----~l~~lQ~~iL~~A~~ 230 (470)
T PRK11933 173 GRVF-GAALP-ETFDAILLDAPCSGEGTV-RKDPDALKN---------------WSPESNL----EIAATQRELIESAFH 230 (470)
T ss_pred hhhh-hhhch-hhcCeEEEcCCCCCCccc-ccCHHHhhh---------------CCHHHHH----HHHHHHHHHHHHHHH
Confidence 3222 11222 3566665 4433333 233433211 0112221 222333578888899
Q ss_pred hhccCCeEEEEeccC
Q 017363 216 ELVPGGLIVFVLFSL 230 (373)
Q Consensus 216 EL~pGG~lvl~~~g~ 230 (373)
-|+|||+||-++..-
T Consensus 231 ~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 231 ALKPGGTLVYSTCTL 245 (470)
T ss_pred HcCCCcEEEEECCCC
Confidence 999999998877653
No 183
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=70.65 E-value=14 Score=37.87 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.9
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017363 63 TFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~~ 81 (373)
.-+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999875
No 184
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=70.56 E-value=46 Score=32.06 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=41.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC-Cccceeecc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP-SRKYFAFGV 139 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~-~~~~f~~gv 139 (373)
-.+.+|+|+|||.|.-+... .+.++ . ..+++.-|.. .....+-+.|-. ....-..-.
T Consensus 32 f~P~~vLD~GsGpGta~wAa--------~~~~~-~------------~~~~~~vd~s-~~~~~l~~~l~~~~~~~~~~~~ 89 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA--------REVWP-S------------LKEYTCVDRS-PEMLELAKRLLRAGPNNRNAEW 89 (274)
T ss_pred CCCceEEEecCChHHHHHHH--------HHHhc-C------------ceeeeeecCC-HHHHHHHHHHHhcccccccchh
Confidence 35779999999999744333 22232 1 1155666643 333444333311 000000011
Q ss_pred CcccccCCCCCCcceEEEccCcccccc
Q 017363 140 PGSFHGRLFPKSSLHFANSSSSLNWLS 166 (373)
Q Consensus 140 pgSFy~rlfP~~Svd~~~Ss~alHWLS 166 (373)
...++....+-..-|+++++++|-=|.
T Consensus 90 ~~~~~~~~~~~~~~DLvi~s~~L~EL~ 116 (274)
T PF09243_consen 90 RRVLYRDFLPFPPDDLVIASYVLNELP 116 (274)
T ss_pred hhhhhcccccCCCCcEEEEehhhhcCC
Confidence 233343333333339999999987554
No 185
>PRK04148 hypothetical protein; Provisional
Probab=69.99 E-value=11 Score=32.71 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=15.2
Q ss_pred CceEEeeecCCCCc-ccHHHH
Q 017363 62 GTFKLADFGCSVGP-NTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~-NS~~~~ 81 (373)
+..+|+|+|||.|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 45799999999997 555553
No 186
>PRK11524 putative methyltransferase; Provisional
Probab=69.44 E-value=11 Score=36.57 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhccCCeEEEEe
Q 017363 206 TEAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
+..+|..-.+-|||||.|++.+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888888999999999864
No 187
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=69.29 E-value=33 Score=33.30 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=59.8
Q ss_pred eeeccCcccccCCCCC---CcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHH
Q 017363 135 FAFGVPGSFHGRLFPK---SSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLN 211 (373)
Q Consensus 135 f~~gvpgSFy~rlfP~---~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~ 211 (373)
=.+.+.|.|-+---++ ++.|.|++++=+ .. ++++-.+|.
T Consensus 145 ~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI---DT-----------------------------------A~Ni~~Yi~ 186 (270)
T PF07942_consen 145 NLSMCAGDFLEVYGPDENKGSFDVVVTCFFI---DT-----------------------------------AENIIEYIE 186 (270)
T ss_pred ceeEecCccEEecCCcccCCcccEEEEEEEe---ec-----------------------------------hHHHHHHHH
Confidence 3566777887666555 789988887322 21 225557899
Q ss_pred HHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHH--hhcCCCChhhhcccCcccccCCHHHHHHHHHhcC
Q 017363 212 ARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDM--TTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNG 289 (373)
Q Consensus 212 ~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~m--v~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~g 289 (373)
.-.+-||||| +...+|.-- .+. .++ ..+.- .-.|.||++.+++.-|
T Consensus 187 tI~~lLkpgG--~WIN~GPLl----yh~-------------~~~~~~~~~s-------------veLs~eEi~~l~~~~G 234 (270)
T PF07942_consen 187 TIEHLLKPGG--YWINFGPLL----YHF-------------EPMSIPNEMS-------------VELSLEEIKELIEKLG 234 (270)
T ss_pred HHHHHhccCC--EEEecCCcc----ccC-------------CCCCCCCCcc-------------cCCCHHHHHHHHHHCC
Confidence 9999999999 344444210 000 011 01111 4578999999999999
Q ss_pred ceEEeEEEE
Q 017363 290 CFRIERMDK 298 (373)
Q Consensus 290 sF~I~~le~ 298 (373)
|++++-+.
T Consensus 235 -F~~~~~~~ 242 (270)
T PF07942_consen 235 -FEIEKEES 242 (270)
T ss_pred -CEEEEEEE
Confidence 99987665
No 188
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=64.14 E-value=3.9 Score=37.73 Aligned_cols=18 Identities=17% Similarity=0.050 Sum_probs=15.5
Q ss_pred eEEeeecCCCCcccHHHH
Q 017363 64 FKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~ 81 (373)
.+|+|+|||+|..++.++
T Consensus 55 ~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CEEEEcCCCccHHHHHHH
Confidence 589999999999998653
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=63.98 E-value=7.4 Score=37.18 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=17.9
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~ 82 (373)
++-+|+++|++.|.-|+.+..
T Consensus 79 ~ak~iLEiGT~~GySal~la~ 99 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATAL 99 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHh
Confidence 467999999999999997743
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=63.97 E-value=37 Score=32.80 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=63.7
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhh--cCCC-Cccceeec
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQ--TMPP-SRKYFAFG 138 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~--~l~~-~~~~f~~g 138 (373)
...+|+|-.||+|..-+..+..+.+. ... ..+.+++-.|.-..-....-. .+.. ....+-..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~----~~~-----------~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEK----RNK-----------IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTC----HHH-----------HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred ccceeechhhhHHHHHHHHHHhhccc----ccc-----------cccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 45789999999999887776655332 111 234578877773222111000 0111 01111122
Q ss_pred cCcccccCCCC-CCcceEEEccCcc--c-ccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 017363 139 VPGSFHGRLFP-KSSLHFANSSSSL--N-WLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARA 214 (373)
Q Consensus 139 vpgSFy~rlfP-~~Svd~~~Ss~al--H-WLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 214 (373)
..-+|-..... ...+|+++++=-+ . |-. +....+. -|.++ ..+. ...|+ .|+..--
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~--~~~~~~~---~~~~~------~~~~--------~~~~~-~Fi~~~l 170 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKD--EELEKDE---RFKKY------FPPK--------SNAEY-AFIEHAL 170 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-ST--GGGCTTC---CCTTC------SSST--------TEHHH-HHHHHHH
T ss_pred ccccccccccccccccccccCCCCcccccccc--ccccccc---ccccc------CCCc--------cchhh-hhHHHHH
Confidence 22344444444 6789999987322 2 411 1111111 11111 0000 01133 4888888
Q ss_pred hhhccCCeEEEEecc
Q 017363 215 HELVPGGLIVFVLFS 229 (373)
Q Consensus 215 ~EL~pGG~lvl~~~g 229 (373)
+-|++||++++.++.
T Consensus 171 ~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 171 SLLKPGGRAAIILPN 185 (311)
T ss_dssp HTEEEEEEEEEEEEH
T ss_pred hhcccccceeEEecc
Confidence 999999999999874
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.03 E-value=9.4 Score=35.19 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHH
Q 017363 38 AKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNII 85 (373)
Q Consensus 38 ~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii 85 (373)
+++.|++...++ . ...+--++|+|||||--|-.+.+.+.
T Consensus 28 LlDaLekd~~eL---~------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 28 LLDALEKDAAEL---K------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHH---h------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 455666666552 2 12367899999999999888877664
No 192
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.70 E-value=8.1 Score=36.86 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.9
Q ss_pred CCceEEeeecCCCCcccHHHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQ 82 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~ 82 (373)
.+..+++|+|+|||..|..+++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHH
Confidence 4568999999999999998844
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=61.52 E-value=4.9 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.056 Sum_probs=27.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCC
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGN 119 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~N 119 (373)
++..+++|+|||.|.-|-.+++.. . +.-.|+-.|+...
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~--------~-------------~~~~v~avDl~~~ 59 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRG--------G-------------PAGRVVAVDLGPM 59 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTST--------T-------------TEEEEEEEESSST
T ss_pred ccccEEEEcCCcccceeeeeeecc--------c-------------ccceEEEEecccc
Confidence 367999999999999998874333 1 1237888888765
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=61.46 E-value=9.5 Score=38.50 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=16.2
Q ss_pred eEEeeecCCCCcccHHHH
Q 017363 64 FKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~ 81 (373)
-+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 489999999999998885
No 195
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=59.31 E-value=11 Score=35.02 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.3
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~i 84 (373)
.--+|+|+||+.|.=|-..++..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhh
Confidence 36899999999999887774433
No 196
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=58.66 E-value=11 Score=37.88 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=39.3
Q ss_pred hcHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCC-------CchhHH------HHHHHHHHHHhhcCCCChhhhcccC
Q 017363 204 NDTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDS-------NGGKLY------GFLGSCLIDMTTKGLIDEEKVDSFN 270 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~-------~~~~~~------~~l~~al~~mv~eGli~~e~~d~f~ 270 (373)
+=++.+|.+| +=|+|.|.|+=++. +-...|.+.. ....+| ..=-..|..-+.+|+..+--+|.|.
T Consensus 260 RMLEsYl~Ar-k~l~P~GkMfPT~g-diHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD 337 (517)
T KOG1500|consen 260 RMLESYLHAR-KWLKPNGKMFPTVG-DIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFD 337 (517)
T ss_pred HHHHHHHHHH-hhcCCCCcccCccc-ceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccc
Confidence 3567899999 99999999965543 2222221110 001111 1111233444456777777788887
Q ss_pred cccccC
Q 017363 271 IPLYFP 276 (373)
Q Consensus 271 ~P~y~p 276 (373)
+-+...
T Consensus 338 ~RilmA 343 (517)
T KOG1500|consen 338 IRILMA 343 (517)
T ss_pred cceeec
Confidence 766653
No 197
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=56.36 E-value=18 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.4
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~ 81 (373)
+.+-+|+|+|||--|.++..|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~ 124 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWM 124 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTT
T ss_pred CCCchhhhhhccCCceehhhc
Confidence 458899999999999998776
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=53.58 E-value=40 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.7
Q ss_pred eEEeeecCCCCcccHHHH
Q 017363 64 FKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~ 81 (373)
.+++|++||+|..|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la 225 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA 225 (362)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 369999999999999665
No 199
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=51.54 E-value=29 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.417 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhc
Q 017363 244 LYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERN 288 (373)
Q Consensus 244 ~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~ 288 (373)
+...+..+|+.|...|.|+++|-|....|.+.| .+.-+.+|+..
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~-sqqARrLLD~V 55 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTP-SQQARRLLDLV 55 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCCh-HHHHHHHHHHH
Confidence 446788899999999999999999999999998 46667777653
No 200
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=51.51 E-value=9 Score=34.83 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=16.2
Q ss_pred eEEeeecCCCCcccHHHH
Q 017363 64 FKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~ 81 (373)
-+++|++||+|..++.++
T Consensus 51 ~~vLDLfaGsG~lglea~ 68 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEAL 68 (189)
T ss_pred CEEEEecCCCcHHHHHHH
Confidence 589999999999999885
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=51.20 E-value=1.2e+02 Score=27.79 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.6
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
...-|++||-|+|..|-.++
T Consensus 48 sglpVlElGPGTGV~TkaIL 67 (194)
T COG3963 48 SGLPVLELGPGTGVITKAIL 67 (194)
T ss_pred cCCeeEEEcCCccHhHHHHH
Confidence 35789999999999887664
No 202
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=47.44 E-value=97 Score=29.42 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=34.7
Q ss_pred CceEEeeecCCCCcccHHHHH------------HHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhh
Q 017363 62 GTFKLADFGCSVGPNTFIAVQ------------NIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNT 123 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~ 123 (373)
+.-.|+|+|.|.|..|..+.+ ..++.+++++. ..+.++++..|.-.=|...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~-----------~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA-----------SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT-----------TCSSEEEEES-TTTSCGGG
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh-----------hcccceeeecchhccccHH
Confidence 468999999999999999974 34555555443 1345788888876544433
No 203
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=47.34 E-value=12 Score=34.03 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCH
Q 017363 242 GKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTA 278 (373)
Q Consensus 242 ~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~ 278 (373)
+.+...+.+.|.+||.+|+|+-|+.-+-|+=|-|+|.
T Consensus 39 ~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 39 QIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred ccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 4577889999999999999999999999999999863
No 204
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=46.03 E-value=9.9 Score=35.66 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.8
Q ss_pred ceEEeeecCCCCcccHHH
Q 017363 63 TFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~ 80 (373)
-.-+||||||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 378999999999877654
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=45.97 E-value=23 Score=35.48 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=15.3
Q ss_pred EEeeecCCCCcccHHHH
Q 017363 65 KLADFGCSVGPNTFIAV 81 (373)
Q Consensus 65 ~IaD~GCs~G~NS~~~~ 81 (373)
+|+|+|||+|..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 200 DLLELYCGNGNFSLALA 216 (353)
T ss_pred cEEEEeccccHHHHHHH
Confidence 69999999999999665
No 206
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=45.63 E-value=3.3e+02 Score=27.41 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=42.6
Q ss_pred cHHHHHHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHH
Q 017363 205 DTEAFLNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAI 284 (373)
Q Consensus 205 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ 284 (373)
..-.+|..-.+-|||||..+ .+|.- ..+... ..|. -|-+..-.|.|++..+
T Consensus 274 NileYi~tI~~iLk~GGvWi--NlGPL----lYHF~d---------------~~g~--------~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 274 NILEYIDTIYKILKPGGVWI--NLGPL----LYHFED---------------THGV--------ENEMSIELSLEDLKRV 324 (369)
T ss_pred HHHHHHHHHHHhccCCcEEE--eccce----eeeccC---------------CCCC--------cccccccccHHHHHHH
Confidence 34468999999999999865 33311 000000 0011 2334567899999999
Q ss_pred HHhcCceEEeEEEEec
Q 017363 285 IERNGCFRIERMDKLP 300 (373)
Q Consensus 285 ie~~gsF~I~~le~~~ 300 (373)
.+.-| |++++=+.++
T Consensus 325 ~~~~G-F~~~ke~~Id 339 (369)
T KOG2798|consen 325 ASHRG-FEVEKERGID 339 (369)
T ss_pred HHhcC-cEEEEeeeee
Confidence 99999 9998777554
No 207
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=44.62 E-value=17 Score=33.52 Aligned_cols=114 Identities=18% Similarity=0.326 Sum_probs=55.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHh------------hcC
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLF------------QTM 128 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf------------~~l 128 (373)
++++||...|||+|-=.-.+.=-+ .+..... ....++++-+|+-. ..|- +.+
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll----~e~~~~~---------~~~~~~I~atDi~~---~~L~~Ar~G~Y~~~~~~~~ 93 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLL----LELLPGA---------LGWDFRILATDISP---SALEKARAGIYPERSLRGL 93 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHH----HHHH-S----------TT-SEEEEEEES-H---HHHHHHHHTEEEGGGGTTS
T ss_pred CCCeEEEECCCCCChhHHHHHHHH----HHHhccc---------CCCceEEEEEECCH---HHHHHHHhCCCCHHHHhhh
Confidence 468999999999996443332111 1111111 12267999999853 2221 122
Q ss_pred CCC--ccceeeccCcccc-----------------cCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecC
Q 017363 129 PPS--RKYFAFGVPGSFH-----------------GRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSG 189 (373)
Q Consensus 129 ~~~--~~~f~~gvpgSFy-----------------~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~ 189 (373)
|.. ..||....++.|- +.-.|.+.+|+|+|-+.|-.+...-
T Consensus 94 ~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-------------------- 153 (196)
T PF01739_consen 94 PPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-------------------- 153 (196)
T ss_dssp -HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH--------------------
T ss_pred HHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH--------------------
Confidence 211 2445333322221 1234667888888888887765221
Q ss_pred CCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEEE
Q 017363 190 LVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVFV 226 (373)
Q Consensus 190 ~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 226 (373)
-...|+.-++-|+|||.|++.
T Consensus 154 ----------------~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 154 ----------------QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ----------------HHHHHHHHGGGEEEEEEEEE-
T ss_pred ----------------HHHHHHHHHHHcCCCCEEEEe
Confidence 125677788999999999764
No 208
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=44.53 E-value=12 Score=31.56 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.6
Q ss_pred EEeeecCCCCcccHHHH
Q 017363 65 KLADFGCSVGPNTFIAV 81 (373)
Q Consensus 65 ~IaD~GCs~G~NS~~~~ 81 (373)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999988764
No 209
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.40 E-value=15 Score=33.58 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHH
Q 017363 242 GKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAE 279 (373)
Q Consensus 242 ~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~e 279 (373)
|..-..+++++..||.+|+|.-|+.-+-|+=|-||+..
T Consensus 26 gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 26 GIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred CCchhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 44556889999999999999999999999999999754
No 210
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=43.18 E-value=13 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.0
Q ss_pred CCceEEeeecCCCCcccHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~ 80 (373)
.+....+|+|||-|-..-++
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred CCCCceEEccCCchHHHHHH
Confidence 35778999999999776655
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.98 E-value=54 Score=32.24 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.0
Q ss_pred hcHHHHHHHHHhhhccCCeEEEEeccC
Q 017363 204 NDTEAFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
..+..+|..-.+-|+|||+|++..+-.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 467888998899999999999988753
No 212
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=41.60 E-value=11 Score=24.95 Aligned_cols=15 Identities=47% Similarity=0.970 Sum_probs=8.6
Q ss_pred ccccCCHHHHHHHHH
Q 017363 272 PLYFPTAEELKAIIE 286 (373)
Q Consensus 272 P~y~ps~eE~~~~ie 286 (373)
|.|+||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 778999999887664
No 213
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=37.63 E-value=31 Score=25.73 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=24.1
Q ss_pred cccCcccccCCHHHHHHHHHh----cCceEEeEEE
Q 017363 267 DSFNIPLYFPTAEELKAIIER----NGCFRIERMD 297 (373)
Q Consensus 267 d~f~~P~y~ps~eE~~~~ie~----~gsF~I~~le 297 (373)
.+|-+|+|..|+||-..+-+- .| |.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 578899999999998887772 45 8887765
No 214
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=36.83 E-value=29 Score=22.18 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.4
Q ss_pred HHHHHhhcCCCChhhhc
Q 017363 251 CLIDMTTKGLIDEEKVD 267 (373)
Q Consensus 251 al~~mv~eGli~~e~~d 267 (373)
.|.+|-..|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 47889999999999864
No 215
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=35.42 E-value=33 Score=34.89 Aligned_cols=48 Identities=10% Similarity=-0.073 Sum_probs=32.7
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHH
Q 017363 19 DGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 19 ~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~ 81 (373)
.++-.|+-|...-+.+...+...+. . ..+..+|+|++||+|..++.+.
T Consensus 29 ~~~vFyqp~~~~nrdl~~~v~~~~~----~-----------~~~~~~vLDl~aGsG~~~l~~a 76 (382)
T PRK04338 29 WAPVFYNPRMELNRDISVLVLRAFG----P-----------KLPRESVLDALSASGIRGIRYA 76 (382)
T ss_pred CCCeeeCccccchhhHHHHHHHHHH----h-----------hcCCCEEEECCCcccHHHHHHH
Confidence 3456899888777766554443332 0 1123689999999999999883
No 216
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=35.17 E-value=87 Score=30.41 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=30.4
Q ss_pred HHHHHhhhccCCeEEEEeccCCCCCCccCCCchhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHhcC
Q 017363 210 LNARAHELVPGGLIVFVLFSLPNGVPMIDSNGGKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIERNG 289 (373)
Q Consensus 210 L~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~~g 289 (373)
++.=...|.||.+|+++-...+.. +. ..+.+...+ . .-..|.+.||.+|+.+.++ |
T Consensus 173 v~~l~d~lapGS~L~ish~t~d~~-p~-------~~~~~~~~~----~----------~~~~~~~~Rs~~ei~~~f~--g 228 (267)
T PF04672_consen 173 VARLRDALAPGSYLAISHATDDGA-PE-------RAEALEAVY----A----------QAGSPGRPRSREEIAAFFD--G 228 (267)
T ss_dssp HHHHHCCS-TT-EEEEEEEB-TTS-HH-------HHHHHHHHH----H----------HCCS----B-HHHHHHCCT--T
T ss_pred HHHHHHhCCCCceEEEEecCCCCC-HH-------HHHHHHHHH----H----------cCCCCceecCHHHHHHHcC--C
Confidence 333346899999999999975422 20 112222222 2 2246889999999999887 5
Q ss_pred ceEE
Q 017363 290 CFRI 293 (373)
Q Consensus 290 sF~I 293 (373)
|++
T Consensus 229 -~el 231 (267)
T PF04672_consen 229 -LEL 231 (267)
T ss_dssp -SEE
T ss_pred -Ccc
Confidence 654
No 217
>PF14904 FAM86: Family of unknown function
Probab=34.82 E-value=38 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=26.3
Q ss_pred HHhHHHhhhhHHHhh--hChHHHHHHHHHHHHH
Q 017363 315 TSQIRAVFEGVVKEH--FGYDLVDKIFNFFTAK 345 (373)
Q Consensus 315 ~~~iRa~~e~~l~~h--~g~~i~delf~ry~~~ 345 (373)
..|.|+|...+|+.+ .+.+..|+||+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 468899999999866 4889999999999763
No 218
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=33.92 E-value=57 Score=23.35 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHhhhccCC
Q 017363 195 SEAYSAQFKNDTEAFLNARAHELVPGG 221 (373)
Q Consensus 195 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 221 (373)
.+.|.+.|++|-.+.|.+|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 488999999999999999999877644
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.91 E-value=13 Score=33.13 Aligned_cols=19 Identities=32% Similarity=0.481 Sum_probs=15.4
Q ss_pred CceEEeeecCCCCcccHHH
Q 017363 62 GTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~ 80 (373)
+..+++|+|||.|-.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 3578999999999988543
No 220
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=33.60 E-value=23 Score=31.72 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.7
Q ss_pred EEeeecCCCCcccHHHHHH
Q 017363 65 KLADFGCSVGPNTFIAVQN 83 (373)
Q Consensus 65 ~IaD~GCs~G~NS~~~~~~ 83 (373)
+|+|.-||.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999998643
No 221
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=33.25 E-value=26 Score=35.37 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.3
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAV 81 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~ 81 (373)
.-.+++|+|||+|.-|-.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 45799999999999998774
No 222
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.84 E-value=31 Score=31.62 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCChhhhcccCcccccCCH
Q 017363 242 GKLYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTA 278 (373)
Q Consensus 242 ~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~ 278 (373)
+.+|..+.++|..||.+|++..+++-.-|.=|-|||.
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 5678899999999999999999999999999999974
No 223
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=32.54 E-value=47 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhh
Q 017363 244 LYGFLGSCLIDMTTKGLIDEEK 265 (373)
Q Consensus 244 ~~~~l~~al~~mv~eGli~~e~ 265 (373)
+=..|.++|.+|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 4568999999999999998764
No 224
>PRK13699 putative methylase; Provisional
Probab=30.96 E-value=83 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhccCCeEEEEe
Q 017363 207 EAFLNARAHELVPGGLIVFVL 227 (373)
Q Consensus 207 ~~FL~~Ra~EL~pGG~lvl~~ 227 (373)
..+|..-++-|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777778999999887643
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=30.64 E-value=34 Score=36.01 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.3
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~i 84 (373)
+..+|+|.|||+|...+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 56899999999999988876654
No 226
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.51 E-value=20 Score=32.36 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhccCCeEEEEecc
Q 017363 206 TEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 206 ~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
...+|+...+=|||||.|-+.++.
T Consensus 65 g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 346899999999999999999874
No 227
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=28.87 E-value=33 Score=23.71 Aligned_cols=16 Identities=44% Similarity=0.943 Sum_probs=13.8
Q ss_pred cccccCCHHHHHHHHH
Q 017363 271 IPLYFPTAEELKAIIE 286 (373)
Q Consensus 271 ~P~y~ps~eE~~~~ie 286 (373)
+|.++||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999988764
No 228
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=27.65 E-value=3.7e+02 Score=28.10 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCchhhHhhcCCC---Cccceee
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPP---SRKYFAF 137 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~---~~~~f~~ 137 (373)
..-.||+|.=|+.|.=|-.+ .++- +..+ .||-||--.|--..|-.+++. .+.+-..
T Consensus 240 q~gERIlDmcAAPGGKTt~I-----AalM---kn~G-------------~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n 298 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHI-----AALM---KNTG-------------VIFANDSNENRLKSLKANLHRLGVTNTIVSN 298 (460)
T ss_pred CCCCeecchhcCCCchHHHH-----HHHH---cCCc-------------eEEecccchHHHHHHHHHHHHhCCCceEEEc
Confidence 34689999999999988443 1122 1111 699999887776666665542 2344555
Q ss_pred ccCcccccCCCCCCcceEEEccCcccccccchhhhhcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhh
Q 017363 138 GVPGSFHGRLFPKSSLHFANSSSSLNWLSKISKEILDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHEL 217 (373)
Q Consensus 138 gvpgSFy~rlfP~~Svd~~~Ss~alHWLS~~P~~~~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 217 (373)
..+..|=+-.||+ |+|=|. =..||.-+. ..+|..-.+++........|.. =-+..|..--+-+
T Consensus 299 ~D~~ef~~~~~~~-~fDRVL--------LDAPCSGtg----vi~K~~~vkt~k~~~di~~~~~----LQr~LllsAi~lv 361 (460)
T KOG1122|consen 299 YDGREFPEKEFPG-SFDRVL--------LDAPCSGTG----VISKDQSVKTNKTVKDILRYAH----LQRELLLSAIDLV 361 (460)
T ss_pred cCcccccccccCc-ccceee--------ecCCCCCCc----ccccccccccchhHHHHHHhHH----HHHHHHHHHHhhc
Confidence 5555665566766 777553 234544321 1122222333222222222211 1123555556788
Q ss_pred ccCCeEEEEeccCC
Q 017363 218 VPGGLIVFVLFSLP 231 (373)
Q Consensus 218 ~pGG~lvl~~~g~~ 231 (373)
++||+||-++....
T Consensus 362 ~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 362 KAGGVLVYSTCSIT 375 (460)
T ss_pred cCCcEEEEEeeecc
Confidence 99999999987644
No 229
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.17 E-value=97 Score=28.00 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHHHh
Q 017363 244 LYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAIIER 287 (373)
Q Consensus 244 ~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~ie~ 287 (373)
.|+-+.+-++.|+++|.++++..+ ......+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 688888888999999999998776 45568899999888764
No 230
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=26.55 E-value=27 Score=28.67 Aligned_cols=12 Identities=42% Similarity=0.734 Sum_probs=8.7
Q ss_pred eeecCCCCcccHH
Q 017363 67 ADFGCSVGPNTFI 79 (373)
Q Consensus 67 aD~GCs~G~NS~~ 79 (373)
+|+||| |.||+-
T Consensus 7 IDIGcG-~GNTmd 18 (124)
T PF07101_consen 7 IDIGCG-AGNTMD 18 (124)
T ss_pred cccccC-CCcchh
Confidence 699999 556653
No 231
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=24.68 E-value=46 Score=30.77 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.1
Q ss_pred CceEEeeecCCCCcccHHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQN 83 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~ 83 (373)
++-+|+++||+.|.-|+.+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~ 66 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEA 66 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHh
Confidence 4679999999999999988543
No 232
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=24.53 E-value=52 Score=24.37 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHhhcHHHHHHHHHhhhccCCe
Q 017363 196 EAYSAQFKNDTEAFLNARAHELVPGGL 222 (373)
Q Consensus 196 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 222 (373)
+.+++-|..||..++......||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 466777888999999999999998764
No 233
>smart00400 ZnF_CHCC zinc finger.
Probab=23.87 E-value=63 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.4
Q ss_pred eEEeeecCCCCcccHHHHHHH
Q 017363 64 FKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~i 84 (373)
-..-++||+.|.+.+-++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999999887765
No 234
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=23.78 E-value=2e+02 Score=28.32 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCceEEeeecCCCCcccHHHHHH------------HHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQN------------IIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGND 120 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~ND 120 (373)
..+-.|+++|-|+|..|..+++. .+..+.++.+. + -....+||++.|.-..|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g---t-----p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG---T-----PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC---C-----CccceeeEEecccccCC
Confidence 35789999999999999999854 44555555432 1 11356899999987777
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=23.67 E-value=95 Score=29.13 Aligned_cols=18 Identities=22% Similarity=-0.084 Sum_probs=16.1
Q ss_pred ceEEeeecCCCCcccHHH
Q 017363 63 TFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 63 ~~~IaD~GCs~G~NS~~~ 80 (373)
-.+|+|+=-|.|..|.++
T Consensus 49 g~tVid~~PGgGy~TrI~ 66 (238)
T COG4798 49 GATVIDLIPGGGYFTRIF 66 (238)
T ss_pred CCEEEEEecCCccHhhhh
Confidence 378999999999999887
No 236
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=22.90 E-value=65 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhhcHHHHHHHHHhh
Q 017363 191 VKGVSEAYSAQFKNDTEAFLNARAHE 216 (373)
Q Consensus 191 ~~~~~~ay~~Q~~~D~~~FL~~Ra~E 216 (373)
+..+...|++||++||-..|+.|..+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55678999999999999999999866
No 237
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=22.88 E-value=64 Score=30.41 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCcccHHHHHHH
Q 017363 62 GTFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 62 ~~~~IaD~GCs~G~NS~~~~~~i 84 (373)
.+++|+|+|.|+|.++.-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 46999999999998877666544
No 238
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=22.80 E-value=2.7e+02 Score=28.19 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCCCCCCceeEEEecCCCCCc
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQNSSSALEFQVFFNDHYGND 120 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~v~~nDLp~ND 120 (373)
.+.+.|+|||.+.|. -+-.+|+++..+. ..+|.+.+.--+.|...
T Consensus 109 ~~~vHIID~~i~~G~----QW~~LiqaLa~R~-----------~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGV----QWPSLIQALASRP-----------GGPPSLRITGIGPPNSG 153 (374)
T ss_pred CcceEEEeccCCcch----HHHHHHHHHhcCC-----------CCCCeEEEEeccCCCCC
Confidence 468999999999995 4445556666442 24678999999997643
No 239
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=1.2e+02 Score=28.18 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=45.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhccCCCcCC
Q 017363 23 SYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADHQDNHQN 102 (373)
Q Consensus 23 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~~~~~~~ 102 (373)
-|.+-+..+.--..++..+++ |.+...+ + .+-.+|+||||+.|.=|-.+...+-...+ -.+.|.+.
T Consensus 15 ~Y~~~Ak~~gyRSRAa~KL~e--l~~k~~i--~-----~~~~~ViDLGAAPGgWsQva~~~~~~~~~-----ivavDi~p 80 (205)
T COG0293 15 PYYKKAKKEGYRSRAAYKLLE--LNEKFKL--F-----KPGMVVVDLGAAPGGWSQVAAKKLGAGGK-----IVAVDILP 80 (205)
T ss_pred HHHHHHhhccccchHHHHHHH--HHHhcCe--e-----cCCCEEEEcCCCCCcHHHHHHHHhCCCCc-----EEEEECcc
Confidence 477777666544444444433 2221211 1 34689999999999988877433311000 01122233
Q ss_pred CCCCceeEEEecCCCCCch
Q 017363 103 SSSALEFQVFFNDHYGNDF 121 (373)
Q Consensus 103 ~~~~~~~~v~~nDLp~NDF 121 (373)
..+.+.+..+=.|.-..|.
T Consensus 81 ~~~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 81 MKPIPGVIFLQGDITDEDT 99 (205)
T ss_pred cccCCCceEEeeeccCccH
Confidence 3445556666677665543
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=22.30 E-value=51 Score=30.72 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.3
Q ss_pred eEEeeecCCCCcccHHHHHH
Q 017363 64 FKLADFGCSVGPNTFIAVQN 83 (373)
Q Consensus 64 ~~IaD~GCs~G~NS~~~~~~ 83 (373)
-+++|+|.|+|..|+.....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hceeeccCCcchHHHHHHhh
Confidence 57899999999999988654
No 241
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=21.83 E-value=1.4e+02 Score=28.83 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=15.7
Q ss_pred CCceEEeeecCCCCcccHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~ 80 (373)
.+-.+|+|-=.|=|..++..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a 152 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEA 152 (287)
T ss_pred ccCCEeeeeccCccHHHHHH
Confidence 34689999988888887765
No 242
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=21.64 E-value=46 Score=32.57 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHH-HhhhccccCCCCCCCCceEEeeecCCCCcccHHH
Q 017363 36 DAAKEMISESI-FDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIA 80 (373)
Q Consensus 36 ~~~~~~l~~ai-~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~ 80 (373)
..+.+.+.+++ .+ + . -.--||+||||++|--.+..
T Consensus 99 ~dl~~~l~~e~~~~-~--~-------~~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 99 VDLLPYLKEEIGAQ-M--S-------FSGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHHhhhh-e--E-------ecCceeEecCCcccccchhh
Confidence 45666777666 22 1 1 12368999999999877655
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=21.36 E-value=47 Score=30.79 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhcCceEEeEEEEe
Q 017363 276 PTAEELKAIIERNGCFRIERMDKL 299 (373)
Q Consensus 276 ps~eE~~~~ie~~gsF~I~~le~~ 299 (373)
....++|.++.+.| |.|..=+++
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv 125 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLV 125 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEE
Confidence 47899999999999 998764443
No 244
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=21.17 E-value=58 Score=35.32 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCceEEeeecCCCCcccHHHHHHH
Q 017363 61 CGTFKLADFGCSVGPNTFIAVQNI 84 (373)
Q Consensus 61 ~~~~~IaD~GCs~G~NS~~~~~~i 84 (373)
.+.++|+|+|=|+|.|++..++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~ 79 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAF 79 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHH
Confidence 457999999999999999998765
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=21.10 E-value=2.6e+02 Score=29.65 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=82.0
Q ss_pred CCCCCchhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCceEEeeecCCCCcccHHHHHHHHHHHHHHHHhcc
Q 017363 17 GGDGDYSYAKNSSFQRMIIDAAKEMISESIFDKLDLKSLGFDDTCGTFKLADFGCSVGPNTFIAVQNIIEAVQTKYRADH 96 (373)
Q Consensus 17 gG~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~~IaD~GCs~G~NS~~~~~~ii~~i~~~~~~~~ 96 (373)
+|-....|.+....=++.+..-+.++.-. +. .++...|.|...+.|..+..+. +
T Consensus 332 ~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~------i~------~~~iRNVMDMnAg~GGFAAAL~--------~------ 385 (506)
T PF03141_consen 332 PGISPEEFKEDTKHWKKRVSHYKKLLGLA------IK------WGRIRNVMDMNAGYGGFAAALI--------D------ 385 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccc------cc------ccceeeeeeecccccHHHHHhc--------c------
Confidence 34455666666666555555444443211 11 4567889999999999988771 1
Q ss_pred CCCcCCCCCCceeEEEecCCCCCchhhHhhcCCCCccceeeccCcccccCC--C--CCCcceEEEccCcccccccchhhh
Q 017363 97 QDNHQNSSSALEFQVFFNDHYGNDFNTLFQTMPPSRKYFAFGVPGSFHGRL--F--PKSSLHFANSSSSLNWLSKISKEI 172 (373)
Q Consensus 97 ~~~~~~~~~~~~~~v~~nDLp~NDFn~lf~~l~~~~~~f~~gvpgSFy~rl--f--P~~Svd~~~Ss~alHWLS~~P~~~ 172 (373)
.| -.+.|=.|...-||| .-+|-=|..|.++.-+ | -|++.|++|++.-+-=.++- +
T Consensus 386 ---------~~--VWVMNVVP~~~~ntL-------~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~r-C-- 444 (506)
T PF03141_consen 386 ---------DP--VWVMNVVPVSGPNTL-------PVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDR-C-- 444 (506)
T ss_pred ---------CC--ceEEEecccCCCCcc-------hhhhhcccchhccchhhccCCCCcchhheehhhhhhhhccc-c--
Confidence 12 456777777666666 4567777777776433 2 36899999987665322211 2
Q ss_pred hcCCCCCCCCCceeecCCCHHHHHHHHHHHhhcHHHHHHHHHhhhccCCeEEE
Q 017363 173 LDSRSPAWNKGSIICSGLVKGVSEAYSAQFKNDTEAFLNARAHELVPGGLIVF 225 (373)
Q Consensus 173 ~~~~~~~~nkg~I~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 225 (373)
++...|----+=|+|||.+++
T Consensus 445 --------------------------------~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 445 --------------------------------EMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred --------------------------------cHHHHHHHhHhhcCCCceEEE
Confidence 344556666688999999876
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.75 E-value=1e+02 Score=30.56 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.3
Q ss_pred hcHHHHHHHHHhhhccCCeEEEEecc
Q 017363 204 NDTEAFLNARAHELVPGGLIVFVLFS 229 (373)
Q Consensus 204 ~D~~~FL~~Ra~EL~pGG~lvl~~~g 229 (373)
..+..+|..-..-|+|||+|++..+-
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 35778888888999999999998875
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.64 E-value=1e+02 Score=30.62 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=26.6
Q ss_pred HHHHHhhcHHHHHHHHHhhhccCCeEEEEeccC
Q 017363 198 YSAQFKNDTEAFLNARAHELVPGGLIVFVLFSL 230 (373)
Q Consensus 198 y~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 230 (373)
|-.+==..+..+|.+--+-|+|||+|++..+-.
T Consensus 215 ~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 215 YVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred eehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 334444578899999999999999999998863
No 248
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=20.01 E-value=1.3e+02 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhcccCcccccCCHHHHHHHH
Q 017363 244 LYGFLGSCLIDMTTKGLIDEEKVDSFNIPLYFPTAEELKAII 285 (373)
Q Consensus 244 ~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~ps~eE~~~~i 285 (373)
.|+-+-+-++.|+++|.++++..+ ...+..+++|+.+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 467777778899999999998876 667788888887653
Done!