Query 017364
Match_columns 373
No_of_seqs 301 out of 2674
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.6E-57 1E-61 467.1 35.7 367 1-373 100-480 (1153)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.9E-42 8.5E-47 307.4 16.0 269 90-362 1-284 (287)
3 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-41 4.7E-46 334.8 22.7 280 88-373 161-468 (889)
4 PRK04841 transcriptional regul 99.6 4.3E-14 9.4E-19 146.0 22.1 267 82-372 11-305 (903)
5 PF01637 Arch_ATPase: Archaeal 99.6 2.1E-14 4.5E-19 124.3 15.0 198 87-289 1-234 (234)
6 PRK00411 cdc6 cell division co 99.6 7E-13 1.5E-17 123.9 24.2 251 82-342 27-309 (394)
7 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-11 2.8E-16 114.2 25.6 249 82-340 12-299 (365)
8 TIGR00635 ruvB Holliday juncti 99.5 4.4E-13 9.6E-18 120.7 14.5 249 85-373 4-285 (305)
9 PRK00080 ruvB Holliday junctio 99.5 2.2E-13 4.7E-18 123.6 11.8 254 81-373 21-306 (328)
10 COG0488 Uup ATPase components 99.5 6.9E-14 1.5E-18 132.2 8.5 230 2-244 216-511 (530)
11 COG3899 Predicted ATPase [Gene 99.5 1.6E-12 3.4E-17 130.6 18.0 265 87-356 2-335 (849)
12 TIGR03015 pepcterm_ATPase puta 99.4 3E-11 6.6E-16 106.8 19.6 177 109-293 44-242 (269)
13 PF05729 NACHT: NACHT domain 99.4 1.7E-11 3.6E-16 100.1 13.1 142 109-258 1-163 (166)
14 COG2909 MalT ATP-dependent tra 99.3 7.1E-11 1.5E-15 113.6 17.9 267 82-372 16-311 (894)
15 COG2256 MGS1 ATPase related to 99.2 6.6E-10 1.4E-14 98.6 17.3 239 85-356 24-291 (436)
16 PRK13342 recombination factor 99.2 5.6E-10 1.2E-14 104.4 17.0 178 84-293 11-200 (413)
17 PRK06893 DNA replication initi 99.2 1.4E-09 3E-14 93.4 15.6 152 108-293 39-207 (229)
18 COG3903 Predicted ATPase [Gene 99.2 1.2E-10 2.5E-15 103.9 8.5 250 109-373 15-288 (414)
19 PTZ00112 origin recognition co 99.1 5.8E-09 1.3E-13 101.6 17.7 171 83-259 753-950 (1164)
20 PRK12402 replication factor C 99.1 1.5E-08 3.2E-13 92.8 19.7 201 85-291 15-228 (337)
21 PRK07003 DNA polymerase III su 99.1 2.2E-08 4.8E-13 96.9 20.3 196 83-290 14-222 (830)
22 PTZ00202 tuzin; Provisional 99.1 2.1E-07 4.4E-12 84.6 24.8 162 80-258 257-434 (550)
23 PRK14961 DNA polymerase III su 99.0 8.1E-08 1.7E-12 88.3 22.4 194 84-290 15-221 (363)
24 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.4E-08 2.9E-13 87.4 15.6 173 85-293 15-205 (226)
25 PRK00440 rfc replication facto 99.0 5.4E-08 1.2E-12 88.3 20.1 184 85-290 17-204 (319)
26 PRK14963 DNA polymerase III su 99.0 1E-07 2.2E-12 90.7 22.4 195 84-289 13-217 (504)
27 PRK07471 DNA polymerase III su 99.0 1.3E-07 2.9E-12 86.3 22.1 198 81-290 15-239 (365)
28 PRK14960 DNA polymerase III su 99.0 1E-07 2.2E-12 91.4 21.2 195 83-289 13-219 (702)
29 PRK14949 DNA polymerase III su 99.0 1E-07 2.2E-12 94.2 21.7 198 83-290 14-221 (944)
30 PLN03194 putative disease resi 99.0 3.5E-10 7.7E-15 90.4 3.9 64 1-77 111-177 (187)
31 PLN03025 replication factor C 99.0 5.8E-08 1.3E-12 87.8 18.8 186 83-290 11-201 (319)
32 PF13191 AAA_16: AAA ATPase do 99.0 3.6E-09 7.8E-14 87.9 9.9 50 86-135 1-51 (185)
33 PRK04195 replication factor C 99.0 4.2E-08 9.2E-13 93.7 18.3 212 84-325 13-239 (482)
34 PRK12323 DNA polymerase III su 99.0 1.1E-07 2.3E-12 91.0 19.8 199 83-289 14-225 (700)
35 PF00308 Bac_DnaA: Bacterial d 98.9 1.5E-07 3.3E-12 80.0 18.7 184 85-293 9-212 (219)
36 PRK14962 DNA polymerase III su 98.9 2.9E-07 6.3E-12 86.9 22.1 197 83-292 12-222 (472)
37 PRK08727 hypothetical protein; 98.9 5.1E-08 1.1E-12 83.9 15.8 170 85-290 19-205 (233)
38 COG1474 CDC6 Cdc6-related prot 98.9 1.9E-07 4.1E-12 85.2 19.8 253 82-346 14-296 (366)
39 PRK09112 DNA polymerase III su 98.9 1.4E-07 3.1E-12 85.7 18.1 197 81-290 19-241 (351)
40 PF13401 AAA_22: AAA domain; P 98.9 1.7E-08 3.7E-13 78.8 10.6 113 108-227 4-125 (131)
41 PF13173 AAA_14: AAA domain 98.9 8.5E-09 1.8E-13 80.1 8.6 119 109-250 3-127 (128)
42 cd00009 AAA The AAA+ (ATPases 98.9 3.9E-08 8.5E-13 78.1 12.7 123 88-229 1-131 (151)
43 PF14516 AAA_35: AAA-like doma 98.9 8E-07 1.7E-11 80.6 22.4 204 82-296 8-246 (331)
44 TIGR02397 dnaX_nterm DNA polym 98.9 7.1E-07 1.5E-11 82.3 22.5 196 84-291 13-220 (355)
45 PRK14951 DNA polymerase III su 98.9 5.3E-07 1.1E-11 87.3 21.9 197 83-289 14-225 (618)
46 PRK07940 DNA polymerase III su 98.9 1.7E-07 3.6E-12 86.4 17.5 185 85-287 5-211 (394)
47 PRK05642 DNA replication initi 98.9 1.5E-07 3.2E-12 81.1 16.1 151 109-293 46-212 (234)
48 PRK14956 DNA polymerase III su 98.9 2.8E-07 6.1E-12 85.8 18.6 198 83-289 16-222 (484)
49 PRK14964 DNA polymerase III su 98.9 6.1E-07 1.3E-11 84.5 20.9 194 83-288 11-216 (491)
50 PRK06645 DNA polymerase III su 98.9 8.9E-07 1.9E-11 84.0 22.2 195 83-288 19-228 (507)
51 PRK08084 DNA replication initi 98.8 3.7E-07 8.1E-12 78.7 18.1 173 86-293 24-213 (235)
52 PRK13341 recombination factor 98.8 4.1E-07 9E-12 89.9 20.5 175 84-290 27-218 (725)
53 PRK05564 DNA polymerase III su 98.8 5.5E-07 1.2E-11 81.3 19.9 176 85-287 4-188 (313)
54 PRK08691 DNA polymerase III su 98.8 3.1E-07 6.7E-12 88.9 19.0 196 83-290 14-221 (709)
55 TIGR01242 26Sp45 26S proteasom 98.8 7.6E-08 1.6E-12 88.8 14.5 173 85-283 122-328 (364)
56 PRK08903 DnaA regulatory inact 98.8 6.7E-08 1.5E-12 83.1 13.0 170 85-293 18-203 (227)
57 PRK07994 DNA polymerase III su 98.8 1E-07 2.2E-12 92.3 14.7 196 83-290 14-221 (647)
58 PRK14958 DNA polymerase III su 98.8 8.8E-07 1.9E-11 84.5 20.8 196 83-290 14-221 (509)
59 PF05496 RuvB_N: Holliday junc 98.8 3.2E-08 6.8E-13 82.2 9.5 181 82-295 21-227 (233)
60 TIGR00678 holB DNA polymerase 98.8 4.2E-07 9E-12 75.7 16.5 88 189-284 95-186 (188)
61 PRK14087 dnaA chromosomal repl 98.8 2.6E-07 5.5E-12 87.0 16.6 164 109-293 142-323 (450)
62 PRK14955 DNA polymerase III su 98.8 1E-06 2.2E-11 82.1 20.1 200 83-289 14-228 (397)
63 PRK14957 DNA polymerase III su 98.8 3.7E-07 8.1E-12 87.1 17.2 195 84-289 15-221 (546)
64 PRK05896 DNA polymerase III su 98.8 1.3E-06 2.7E-11 83.8 20.5 192 83-286 14-217 (605)
65 PRK14952 DNA polymerase III su 98.7 3E-06 6.4E-11 81.8 22.0 194 84-289 12-220 (584)
66 PRK07764 DNA polymerase III su 98.7 1.1E-06 2.4E-11 88.0 19.7 190 84-286 14-218 (824)
67 PRK14970 DNA polymerase III su 98.7 3.4E-06 7.4E-11 78.0 21.8 182 84-289 16-209 (367)
68 PRK14950 DNA polymerase III su 98.7 1.8E-06 4E-11 84.3 20.7 196 84-291 15-223 (585)
69 KOG2028 ATPase related to the 98.7 1E-07 2.2E-12 83.7 10.6 173 85-284 138-331 (554)
70 PRK14969 DNA polymerase III su 98.7 2.4E-06 5.1E-11 82.1 21.0 191 84-286 15-217 (527)
71 TIGR02639 ClpA ATP-dependent C 98.7 3.4E-07 7.4E-12 91.8 15.7 152 85-258 182-358 (731)
72 KOG0927 Predicted transporter 98.7 4.5E-07 9.8E-12 83.6 15.0 220 2-233 285-571 (614)
73 PRK14959 DNA polymerase III su 98.7 2.9E-06 6.3E-11 81.8 21.0 197 84-293 15-225 (624)
74 PRK09087 hypothetical protein; 98.7 2.6E-07 5.6E-12 78.9 12.6 142 109-293 45-199 (226)
75 PRK14953 DNA polymerase III su 98.7 6.9E-06 1.5E-10 78.1 23.1 194 84-290 15-221 (486)
76 PRK14954 DNA polymerase III su 98.7 2.7E-06 5.8E-11 82.7 20.5 199 83-287 14-226 (620)
77 PRK14088 dnaA chromosomal repl 98.7 1.4E-06 2.9E-11 82.1 17.6 178 108-308 130-332 (440)
78 PRK09111 DNA polymerase III su 98.7 2.9E-06 6.3E-11 82.3 20.2 197 83-290 22-234 (598)
79 TIGR03345 VI_ClpV1 type VI sec 98.7 9.3E-07 2E-11 89.5 16.8 179 83-283 185-390 (852)
80 PRK03992 proteasome-activating 98.7 9.2E-07 2E-11 82.0 15.4 172 86-283 132-337 (389)
81 CHL00095 clpC Clp protease ATP 98.6 6.3E-07 1.4E-11 91.0 14.9 151 85-257 179-353 (821)
82 TIGR00362 DnaA chromosomal rep 98.6 2.3E-06 4.9E-11 80.2 17.7 178 108-308 136-337 (405)
83 PRK08451 DNA polymerase III su 98.6 7.8E-06 1.7E-10 77.9 20.4 196 83-290 12-219 (535)
84 PRK10636 putative ABC transpor 98.6 1.3E-07 2.8E-12 93.4 8.7 39 93-135 327-365 (638)
85 PRK07133 DNA polymerase III su 98.6 1.2E-05 2.6E-10 78.8 21.9 191 84-288 17-218 (725)
86 PRK06647 DNA polymerase III su 98.6 1.5E-05 3.3E-10 77.0 22.5 194 83-289 14-220 (563)
87 TIGR02881 spore_V_K stage V sp 98.6 8.7E-07 1.9E-11 77.8 13.0 131 108-259 42-192 (261)
88 PRK00149 dnaA chromosomal repl 98.6 3E-06 6.5E-11 80.5 17.2 222 108-354 148-412 (450)
89 KOG0066 eIF2-interacting prote 98.6 4.2E-07 9.2E-12 81.7 10.5 148 87-244 596-776 (807)
90 PRK11147 ABC transporter ATPas 98.6 3.7E-07 8E-12 90.4 10.3 39 93-135 334-372 (635)
91 PRK06620 hypothetical protein; 98.5 1.8E-06 3.8E-11 73.2 12.9 139 109-292 45-192 (214)
92 PRK14971 DNA polymerase III su 98.5 2.8E-05 6E-10 76.1 22.7 192 84-289 16-222 (614)
93 PRK06305 DNA polymerase III su 98.5 1.5E-05 3.3E-10 75.2 20.1 197 83-288 15-221 (451)
94 PRK05563 DNA polymerase III su 98.5 3.2E-05 6.9E-10 75.0 22.2 192 83-287 14-218 (559)
95 PRK10865 protein disaggregatio 98.5 4.4E-06 9.5E-11 85.0 17.0 49 84-134 177-225 (857)
96 COG2255 RuvB Holliday junction 98.5 5.4E-06 1.2E-10 70.8 14.6 181 80-293 21-227 (332)
97 PRK14086 dnaA chromosomal repl 98.5 7.3E-06 1.6E-10 78.7 17.1 158 109-291 315-490 (617)
98 PRK14948 DNA polymerase III su 98.5 3.6E-05 7.7E-10 75.3 22.1 197 84-290 15-223 (620)
99 TIGR03346 chaperone_ClpB ATP-d 98.5 3.8E-06 8.3E-11 85.7 16.1 152 85-258 173-349 (852)
100 PRK14965 DNA polymerase III su 98.5 2.5E-05 5.5E-10 76.0 20.7 198 83-289 14-221 (576)
101 PRK07399 DNA polymerase III su 98.5 2.5E-05 5.3E-10 70.1 19.1 195 85-291 4-223 (314)
102 PRK11034 clpA ATP-dependent Cl 98.5 5.1E-06 1.1E-10 82.8 15.6 152 85-258 186-362 (758)
103 PF05621 TniB: Bacterial TniB 98.5 2.4E-05 5.2E-10 68.3 17.7 198 85-290 34-262 (302)
104 PTZ00454 26S protease regulato 98.5 5.5E-06 1.2E-10 76.6 14.6 173 86-284 146-352 (398)
105 PRK05707 DNA polymerase III su 98.5 1.5E-05 3.3E-10 71.9 17.1 95 189-289 105-203 (328)
106 COG3267 ExeA Type II secretory 98.4 2.7E-05 5.9E-10 65.7 17.0 177 108-292 51-248 (269)
107 PF05673 DUF815: Protein of un 98.4 4.2E-05 9.1E-10 64.7 18.2 54 82-136 24-80 (249)
108 PF00004 AAA: ATPase family as 98.4 3.1E-06 6.7E-11 65.9 10.9 23 111-133 1-23 (132)
109 COG0488 Uup ATPase components 98.4 3.9E-07 8.5E-12 86.8 6.6 145 89-244 14-225 (530)
110 TIGR02903 spore_lon_C ATP-depe 98.4 8.3E-06 1.8E-10 79.9 16.0 49 83-133 152-200 (615)
111 KOG0989 Replication factor C, 98.4 2.2E-05 4.7E-10 67.8 16.4 185 82-284 33-225 (346)
112 TIGR03689 pup_AAA proteasome A 98.4 5.1E-06 1.1E-10 78.7 13.8 159 85-258 182-378 (512)
113 PHA02544 44 clamp loader, smal 98.4 5.9E-06 1.3E-10 74.9 13.9 147 83-255 19-170 (316)
114 PRK12422 chromosomal replicati 98.4 2E-05 4.3E-10 74.1 17.7 150 109-283 142-307 (445)
115 CHL00176 ftsH cell division pr 98.4 1.5E-05 3.2E-10 78.1 17.2 180 85-290 183-396 (638)
116 PTZ00361 26 proteosome regulat 98.4 3.9E-06 8.6E-11 78.2 12.2 178 86-289 184-396 (438)
117 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 1.1E-06 2.3E-11 75.0 7.3 143 93-242 19-212 (254)
118 COG0593 DnaA ATPase involved i 98.4 2.3E-05 5.1E-10 71.6 16.1 177 82-282 85-279 (408)
119 PRK12377 putative replication 98.3 1.5E-05 3.3E-10 68.7 13.7 35 109-143 102-136 (248)
120 COG1373 Predicted ATPase (AAA+ 98.3 1.3E-05 2.7E-10 74.5 13.7 135 91-254 23-163 (398)
121 TIGR01241 FtsH_fam ATP-depende 98.3 2E-05 4.4E-10 75.7 15.6 180 85-290 55-268 (495)
122 TIGR02880 cbbX_cfxQ probable R 98.3 1.8E-05 3.8E-10 70.2 14.0 129 110-259 60-209 (284)
123 PRK07952 DNA replication prote 98.3 1.8E-05 3.9E-10 68.1 13.5 49 94-142 85-133 (244)
124 KOG0744 AAA+-type ATPase [Post 98.3 1.1E-05 2.3E-10 70.2 11.3 26 108-133 177-202 (423)
125 CHL00181 cbbX CbbX; Provisiona 98.3 0.00016 3.4E-09 64.2 18.9 130 109-259 60-210 (287)
126 cd03222 ABC_RNaseL_inhibitor T 98.3 2.9E-06 6.3E-11 69.4 7.2 114 109-243 26-146 (177)
127 KOG2543 Origin recognition com 98.2 2.1E-05 4.5E-10 69.9 12.5 201 84-292 5-229 (438)
128 PLN03073 ABC transporter F fam 98.2 1.9E-05 4.2E-10 78.7 13.6 38 94-135 525-562 (718)
129 cd01128 rho_factor Transcripti 98.2 1.2E-06 2.6E-11 75.6 4.5 92 109-202 17-115 (249)
130 PRK08769 DNA polymerase III su 98.2 0.00014 3.1E-09 65.1 17.8 178 94-290 13-209 (319)
131 cd03223 ABCD_peroxisomal_ALDP 98.2 7.1E-06 1.5E-10 66.8 8.7 137 94-243 17-161 (166)
132 COG1222 RPT1 ATP-dependent 26S 98.2 7.6E-05 1.6E-09 66.0 15.0 171 88-285 154-359 (406)
133 COG1120 FepC ABC-type cobalami 98.2 2.3E-06 5.1E-11 73.3 5.2 38 93-134 17-54 (258)
134 cd03214 ABC_Iron-Siderophores_ 98.2 9.2E-06 2E-10 67.1 8.3 143 94-242 15-171 (180)
135 PRK08058 DNA polymerase III su 98.2 0.00013 2.8E-09 66.2 16.2 161 86-257 6-181 (329)
136 CHL00195 ycf46 Ycf46; Provisio 98.2 2.9E-05 6.2E-10 73.6 12.3 176 85-284 228-430 (489)
137 TIGR01243 CDC48 AAA family ATP 98.1 0.00021 4.7E-09 72.1 19.2 180 85-290 453-665 (733)
138 COG4133 CcmA ABC-type transpor 98.1 3.7E-06 8.1E-11 67.4 4.9 45 94-142 18-62 (209)
139 PRK09376 rho transcription ter 98.1 6.1E-06 1.3E-10 74.6 6.8 91 109-201 170-267 (416)
140 TIGR01243 CDC48 AAA family ATP 98.1 6.9E-05 1.5E-09 75.6 15.2 174 85-284 178-382 (733)
141 TIGR00602 rad24 checkpoint pro 98.1 3E-05 6.5E-10 75.5 12.0 52 82-133 81-135 (637)
142 PF10443 RNA12: RNA12 protein; 98.1 0.00074 1.6E-08 61.9 19.9 195 90-295 1-284 (431)
143 smart00382 AAA ATPases associa 98.1 1.4E-05 3E-10 62.8 7.9 34 109-142 3-36 (148)
144 PRK08116 hypothetical protein; 98.1 2E-05 4.3E-10 69.2 9.5 34 109-142 115-148 (268)
145 PRK15064 ABC transporter ATP-b 98.1 5.7E-05 1.2E-09 73.5 13.5 39 93-135 334-372 (530)
146 cd03230 ABC_DR_subfamily_A Thi 98.1 1.3E-05 2.9E-10 65.6 7.8 137 94-242 16-168 (173)
147 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.7E-05 3.6E-10 62.9 8.0 108 109-242 27-140 (144)
148 cd03238 ABC_UvrA The excision 98.1 6.8E-06 1.5E-10 67.2 5.8 126 109-243 22-162 (176)
149 COG2884 FtsE Predicted ATPase 98.1 4.9E-05 1.1E-09 61.2 10.2 40 92-135 16-55 (223)
150 KOG0733 Nuclear AAA ATPase (VC 98.1 6.4E-05 1.4E-09 70.7 12.4 173 85-283 190-396 (802)
151 COG0542 clpA ATP-binding subun 98.1 0.00011 2.5E-09 72.2 14.6 117 85-212 491-617 (786)
152 cd03228 ABCC_MRP_Like The MRP 98.1 1.7E-05 3.6E-10 64.9 7.7 136 94-242 18-167 (171)
153 cd03216 ABC_Carb_Monos_I This 98.1 7E-06 1.5E-10 66.6 5.4 134 94-242 16-155 (163)
154 PRK08181 transposase; Validate 98.0 1.6E-05 3.4E-10 69.5 7.7 40 99-142 101-140 (269)
155 PRK06871 DNA polymerase III su 98.0 0.00066 1.4E-08 61.0 18.1 175 94-286 11-200 (325)
156 PRK07993 DNA polymerase III su 98.0 0.00047 1E-08 62.5 17.2 176 94-286 11-201 (334)
157 cd03246 ABCC_Protease_Secretio 98.0 1.6E-05 3.6E-10 65.1 7.0 126 109-242 29-168 (173)
158 PRK06090 DNA polymerase III su 98.0 0.0015 3.3E-08 58.6 19.9 177 94-290 12-202 (319)
159 cd03237 ABC_RNaseL_inhibitor_d 98.0 2.3E-05 5.1E-10 68.0 8.2 27 109-135 26-52 (246)
160 COG2812 DnaX DNA polymerase II 98.0 0.00045 9.8E-09 65.3 17.2 188 84-284 15-215 (515)
161 cd03247 ABCC_cytochrome_bd The 98.0 2.3E-05 5E-10 64.6 7.7 121 109-242 29-169 (178)
162 TIGR00767 rho transcription te 98.0 9.5E-06 2.1E-10 73.8 5.6 92 109-202 169-267 (415)
163 KOG0735 AAA+-type ATPase [Post 98.0 0.00012 2.6E-09 70.2 12.9 161 108-289 431-616 (952)
164 PF07693 KAP_NTPase: KAP famil 98.0 0.00097 2.1E-08 60.6 18.9 45 91-135 2-47 (325)
165 COG1136 SalX ABC-type antimicr 98.0 6.3E-05 1.4E-09 63.3 10.0 64 177-243 147-216 (226)
166 COG4555 NatA ABC-type Na+ tran 98.0 4.9E-05 1.1E-09 61.8 8.7 28 109-136 29-56 (245)
167 TIGR00763 lon ATP-dependent pr 98.0 0.00044 9.5E-09 70.2 17.6 52 85-136 320-375 (775)
168 PRK11819 putative ABC transpor 98.0 6.2E-05 1.3E-09 73.6 11.2 39 93-135 339-377 (556)
169 PRK06921 hypothetical protein; 98.0 2E-05 4.3E-10 69.1 6.9 36 108-143 117-153 (266)
170 PRK06964 DNA polymerase III su 98.0 0.0015 3.3E-08 59.1 19.2 91 189-289 131-225 (342)
171 cd03225 ABC_cobalt_CbiO_domain 98.0 1.5E-05 3.3E-10 67.7 6.1 37 94-134 17-53 (211)
172 cd03229 ABC_Class3 This class 98.0 1.8E-05 3.9E-10 65.2 6.3 140 94-242 16-174 (178)
173 PF04665 Pox_A32: Poxvirus A32 98.0 3.8E-05 8.3E-10 65.4 8.2 35 109-143 14-48 (241)
174 TIGR01188 drrA daunorubicin re 98.0 9.7E-06 2.1E-10 72.8 4.8 37 94-134 9-45 (302)
175 cd01120 RecA-like_NTPases RecA 97.9 7E-05 1.5E-09 60.5 9.2 34 110-143 1-34 (165)
176 cd03215 ABC_Carb_Monos_II This 97.9 3.9E-05 8.4E-10 63.5 7.8 27 109-135 27-53 (182)
177 KOG0741 AAA+-type ATPase [Post 97.9 0.00032 6.9E-09 65.1 14.0 132 105-258 535-686 (744)
178 TIGR00960 3a0501s02 Type II (G 97.9 3.4E-05 7.3E-10 65.8 7.5 37 94-134 19-55 (216)
179 cd01131 PilT Pilus retraction 97.9 3.5E-05 7.6E-10 64.6 7.4 111 109-232 2-113 (198)
180 COG1124 DppF ABC-type dipeptid 97.9 4E-05 8.6E-10 64.3 7.5 41 93-137 22-62 (252)
181 PRK13543 cytochrome c biogenes 97.9 2.8E-05 6.2E-10 66.1 7.0 38 93-134 26-63 (214)
182 cd03265 ABC_DrrA DrrA is the A 97.9 1.6E-05 3.4E-10 68.0 5.4 38 93-134 15-52 (220)
183 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00043 9.3E-09 60.8 14.5 36 93-132 10-45 (262)
184 cd03226 ABC_cobalt_CbiO_domain 97.9 3E-05 6.6E-10 65.5 7.0 37 94-134 16-52 (205)
185 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00016 3.5E-09 68.2 12.1 174 108-307 545-740 (802)
186 KOG2227 Pre-initiation complex 97.9 0.00086 1.9E-08 61.5 16.4 206 83-294 148-373 (529)
187 cd03235 ABC_Metallic_Cations A 97.9 3.3E-05 7.1E-10 65.7 7.2 38 93-134 14-51 (213)
188 PRK10536 hypothetical protein; 97.9 6.1E-05 1.3E-09 64.5 8.6 53 85-141 55-109 (262)
189 PF13177 DNA_pol3_delta2: DNA 97.9 0.00032 6.9E-09 56.7 12.4 43 89-132 1-43 (162)
190 COG4618 ArpD ABC-type protease 97.9 0.00017 3.7E-09 66.7 11.8 37 92-132 350-386 (580)
191 cd03224 ABC_TM1139_LivF_branch 97.9 2.1E-05 4.6E-10 67.4 5.8 36 94-133 16-51 (222)
192 PRK10865 protein disaggregatio 97.9 0.00049 1.1E-08 70.3 16.5 50 85-134 568-624 (857)
193 TIGR03346 chaperone_ClpB ATP-d 97.9 0.0013 2.9E-08 67.4 19.2 51 85-135 565-622 (852)
194 cd03218 ABC_YhbG The ABC trans 97.9 2.5E-05 5.5E-10 67.4 5.8 37 93-133 15-51 (232)
195 PRK11331 5-methylcytosine-spec 97.9 2.9E-05 6.3E-10 71.8 6.4 54 85-142 175-230 (459)
196 PLN00020 ribulose bisphosphate 97.9 0.0011 2.5E-08 59.6 16.1 29 106-134 146-174 (413)
197 TIGR02639 ClpA ATP-dependent C 97.9 0.00063 1.4E-08 68.6 16.5 49 85-133 454-509 (731)
198 COG0396 sufC Cysteine desulfur 97.9 3.1E-05 6.6E-10 64.3 5.8 59 179-239 151-215 (251)
199 cd00267 ABC_ATPase ABC (ATP-bi 97.9 4.8E-05 1E-09 61.3 6.9 122 109-242 26-153 (157)
200 KOG0062 ATPase component of AB 97.9 1.5E-05 3.3E-10 73.4 4.3 123 109-234 107-261 (582)
201 cd03213 ABCG_EPDR ABCG transpo 97.9 5E-05 1.1E-09 63.5 7.2 36 93-132 24-59 (194)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 1.6E-05 3.5E-10 68.1 4.3 38 93-134 37-74 (224)
203 cd03269 ABC_putative_ATPase Th 97.9 6.6E-05 1.4E-09 63.7 8.0 25 109-133 27-51 (210)
204 PRK13539 cytochrome c biogenes 97.8 8.9E-05 1.9E-09 62.7 8.7 36 94-133 18-53 (207)
205 KOG0730 AAA+-type ATPase [Post 97.8 0.00016 3.5E-09 68.8 11.0 154 106-285 466-639 (693)
206 cd03233 ABC_PDR_domain1 The pl 97.8 0.00012 2.6E-09 61.7 9.3 36 94-133 23-58 (202)
207 cd03259 ABC_Carb_Solutes_like 97.8 2E-05 4.3E-10 67.0 4.6 38 93-134 15-52 (213)
208 PRK11248 tauB taurine transpor 97.8 7.4E-05 1.6E-09 65.4 8.3 37 94-134 17-53 (255)
209 PRK13538 cytochrome c biogenes 97.8 2.1E-05 4.6E-10 66.4 4.7 39 93-135 16-54 (204)
210 PRK06526 transposase; Provisio 97.8 5.2E-05 1.1E-09 65.9 7.2 33 109-141 99-131 (254)
211 PRK13409 putative ATPase RIL; 97.8 7.6E-05 1.6E-09 73.1 9.1 134 109-244 366-529 (590)
212 PRK06835 DNA replication prote 97.8 5.8E-05 1.3E-09 68.0 7.7 35 109-143 184-218 (329)
213 cd03263 ABC_subfamily_A The AB 97.8 2.5E-05 5.5E-10 66.8 5.1 38 93-134 17-54 (220)
214 COG2607 Predicted ATPase (AAA+ 97.8 0.00042 9.1E-09 58.0 11.9 54 84-138 59-115 (287)
215 PF10236 DAP3: Mitochondrial r 97.8 0.001 2.3E-08 59.7 15.6 48 239-286 258-306 (309)
216 PRK13537 nodulation ABC transp 97.8 2.3E-05 4.9E-10 70.5 5.0 39 93-135 22-60 (306)
217 COG1126 GlnQ ABC-type polar am 97.8 0.00018 3.9E-09 59.3 9.6 40 87-130 11-50 (240)
218 PRK09544 znuC high-affinity zi 97.8 4.6E-05 1E-09 66.4 6.7 26 109-134 31-56 (251)
219 PRK11247 ssuB aliphatic sulfon 97.8 2.6E-05 5.7E-10 68.2 5.2 38 93-134 27-64 (257)
220 COG1116 TauB ABC-type nitrate/ 97.8 2.6E-05 5.7E-10 65.8 4.9 40 91-134 16-55 (248)
221 COG1131 CcmA ABC-type multidru 97.8 3.8E-05 8.3E-10 68.4 6.2 41 91-135 18-58 (293)
222 TIGR03719 ABC_ABC_ChvD ATP-bin 97.8 0.00016 3.4E-09 70.7 11.0 39 93-135 337-375 (552)
223 TIGR03771 anch_rpt_ABC anchore 97.8 0.00014 3E-09 62.3 9.5 25 109-133 7-31 (223)
224 TIGR02324 CP_lyasePhnL phospho 97.8 0.0001 2.2E-09 63.2 8.6 37 94-134 24-60 (224)
225 COG4608 AppF ABC-type oligopep 97.8 5.1E-05 1.1E-09 65.0 6.5 136 93-234 28-176 (268)
226 cd03261 ABC_Org_Solvent_Resist 97.8 7.9E-05 1.7E-09 64.4 8.0 37 94-134 16-52 (235)
227 cd03292 ABC_FtsE_transporter F 97.8 0.00015 3.2E-09 61.7 9.5 37 94-134 17-53 (214)
228 PRK10636 putative ABC transpor 97.8 5E-05 1.1E-09 75.3 7.4 40 92-135 15-54 (638)
229 PRK11819 putative ABC transpor 97.8 5.6E-05 1.2E-09 73.9 7.6 39 93-135 22-60 (556)
230 COG0466 Lon ATP-dependent Lon 97.8 0.00011 2.3E-09 70.8 9.1 54 85-138 323-380 (782)
231 cd03250 ABCC_MRP_domain1 Domai 97.8 0.00025 5.5E-09 59.8 10.7 39 93-135 20-58 (204)
232 PRK09183 transposase/IS protei 97.8 7.7E-05 1.7E-09 65.2 7.7 34 109-142 103-136 (259)
233 TIGR02673 FtsE cell division A 97.8 8.5E-05 1.9E-09 63.2 7.8 37 93-133 17-53 (214)
234 KOG0991 Replication factor C, 97.8 0.00091 2E-08 55.8 13.3 49 83-133 25-73 (333)
235 TIGR01288 nodI ATP-binding ABC 97.8 2.7E-05 5.9E-10 70.0 4.9 38 93-134 19-56 (303)
236 TIGR03410 urea_trans_UrtE urea 97.8 4.6E-05 1E-09 65.6 6.2 37 93-133 15-51 (230)
237 PRK10908 cell division protein 97.8 7.2E-05 1.6E-09 64.1 7.3 36 94-133 18-53 (222)
238 cd03293 ABC_NrtD_SsuB_transpor 97.8 6E-05 1.3E-09 64.4 6.8 37 94-134 20-56 (220)
239 cd03267 ABC_NatA_like Similar 97.8 3.2E-05 6.9E-10 66.9 5.1 37 93-133 36-72 (236)
240 PF01695 IstB_IS21: IstB-like 97.8 3.2E-05 7E-10 63.5 4.8 35 109-143 48-82 (178)
241 cd03266 ABC_NatA_sodium_export 97.8 7.4E-05 1.6E-09 63.8 7.1 37 93-133 20-56 (218)
242 PRK11147 ABC transporter ATPas 97.8 4.8E-05 1E-09 75.5 6.8 39 93-135 18-56 (635)
243 cd03232 ABC_PDR_domain2 The pl 97.8 0.00018 3.9E-09 60.0 9.2 34 94-131 23-56 (192)
244 COG1223 Predicted ATPase (AAA+ 97.8 0.00034 7.3E-09 59.2 10.6 173 85-283 121-319 (368)
245 COG4619 ABC-type uncharacteriz 97.8 0.00018 3.8E-09 56.9 8.3 34 109-142 30-63 (223)
246 cd03258 ABC_MetN_methionine_tr 97.8 7.6E-05 1.6E-09 64.4 7.0 38 93-134 20-57 (233)
247 TIGR02315 ABC_phnC phosphonate 97.8 6.4E-05 1.4E-09 65.3 6.6 37 93-133 17-53 (243)
248 PRK11124 artP arginine transpo 97.8 6E-05 1.3E-09 65.5 6.4 37 93-133 17-53 (242)
249 PRK11889 flhF flagellar biosyn 97.7 0.00054 1.2E-08 62.4 12.2 36 107-142 240-275 (436)
250 cd03262 ABC_HisP_GlnQ_permease 97.7 0.00011 2.3E-09 62.5 7.6 37 94-134 16-52 (213)
251 cd03301 ABC_MalK_N The N-termi 97.7 5.3E-05 1.1E-09 64.4 5.7 36 94-133 16-51 (213)
252 cd03268 ABC_BcrA_bacitracin_re 97.7 0.00017 3.8E-09 61.0 8.8 36 94-133 16-51 (208)
253 PRK09361 radB DNA repair and r 97.7 0.00015 3.3E-09 62.2 8.5 47 97-143 12-58 (225)
254 cd03217 ABC_FeS_Assembly ABC-t 97.7 7.4E-05 1.6E-09 62.8 6.4 36 93-132 15-50 (200)
255 COG0470 HolB ATPase involved i 97.7 0.00054 1.2E-08 62.3 12.6 48 87-134 3-50 (325)
256 TIGR01277 thiQ thiamine ABC tr 97.7 0.00015 3.4E-09 61.5 8.5 26 109-134 25-50 (213)
257 PRK11264 putative amino-acid A 97.7 6.4E-05 1.4E-09 65.6 6.3 37 93-133 18-54 (250)
258 COG1484 DnaC DNA replication p 97.7 0.00023 4.9E-09 62.0 9.5 34 109-142 106-139 (254)
259 PRK13546 teichoic acids export 97.7 6.4E-05 1.4E-09 66.0 6.2 37 95-135 41-77 (264)
260 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00013 2.9E-09 62.9 8.1 37 94-134 18-54 (234)
261 TIGR03740 galliderm_ABC gallid 97.7 0.00022 4.8E-09 61.1 9.3 36 94-133 16-51 (223)
262 PRK13536 nodulation factor exp 97.7 3.3E-05 7.2E-10 70.3 4.4 39 92-134 55-93 (340)
263 KOG2228 Origin recognition com 97.7 0.0014 3.1E-08 57.6 14.0 173 85-259 24-220 (408)
264 TIGR02858 spore_III_AA stage I 97.7 0.00011 2.4E-09 64.3 7.4 113 108-230 111-231 (270)
265 PRK08699 DNA polymerase III su 97.7 0.00087 1.9E-08 60.5 13.4 87 190-286 113-203 (325)
266 PRK11608 pspF phage shock prot 97.7 0.0013 2.8E-08 59.6 14.5 47 85-131 6-52 (326)
267 KOG0062 ATPase component of AB 97.7 0.00057 1.2E-08 63.3 12.0 51 182-234 492-545 (582)
268 PRK11614 livF leucine/isoleuci 97.7 0.00014 3E-09 63.0 7.8 36 93-132 20-55 (237)
269 KOG1514 Origin recognition com 97.7 0.0032 7E-08 60.7 17.3 195 83-290 394-622 (767)
270 PRK11034 clpA ATP-dependent Cl 97.7 0.0012 2.5E-08 66.2 15.1 49 85-133 458-513 (758)
271 TIGR03522 GldA_ABC_ATP gliding 97.7 0.00015 3.2E-09 65.1 8.1 37 94-134 18-54 (301)
272 cd03264 ABC_drug_resistance_li 97.7 0.00013 2.7E-09 62.0 7.3 24 110-133 27-50 (211)
273 cd03248 ABCC_TAP TAP, the Tran 97.7 0.00018 3.9E-09 61.7 8.4 38 93-134 29-66 (226)
274 PF07728 AAA_5: AAA domain (dy 97.7 4.9E-05 1.1E-09 59.8 4.5 22 111-132 2-23 (139)
275 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 0.00019 4.2E-09 61.2 8.5 37 94-134 20-56 (218)
276 TIGR02974 phageshock_pspF psp 97.7 0.0014 3E-08 59.5 14.3 46 87-132 1-46 (329)
277 cd03294 ABC_Pro_Gly_Bertaine T 97.7 0.00012 2.6E-09 64.6 7.2 37 94-134 40-76 (269)
278 TIGR03608 L_ocin_972_ABC putat 97.7 0.00041 8.9E-09 58.6 10.3 37 94-134 14-50 (206)
279 COG2274 SunT ABC-type bacterio 97.7 0.00068 1.5E-08 67.3 13.0 39 93-135 488-526 (709)
280 TIGR01184 ntrCD nitrate transp 97.7 0.00013 2.7E-09 62.9 7.1 26 109-134 12-37 (230)
281 PRK06067 flagellar accessory p 97.7 0.00031 6.6E-09 60.7 9.5 48 96-143 13-60 (234)
282 PRK10895 lipopolysaccharide AB 97.7 0.00016 3.4E-09 62.8 7.7 38 93-134 18-55 (241)
283 TIGR01817 nifA Nif-specific re 97.7 0.012 2.6E-07 57.5 21.4 50 84-133 195-244 (534)
284 cd01394 radB RadB. The archaea 97.7 0.00014 3.1E-09 62.0 7.3 48 96-143 7-54 (218)
285 PF00448 SRP54: SRP54-type pro 97.7 0.00033 7.2E-09 58.4 9.2 36 108-143 1-36 (196)
286 cd03231 ABC_CcmA_heme_exporter 97.7 8.8E-05 1.9E-09 62.4 5.8 36 94-133 16-51 (201)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 97.7 0.00014 3.1E-09 71.1 8.0 39 93-135 20-58 (552)
288 PRK13638 cbiO cobalt transport 97.7 7.6E-05 1.7E-09 66.0 5.6 38 93-134 16-53 (271)
289 PRK12608 transcription termina 97.7 0.00027 5.9E-09 64.0 9.1 105 94-201 120-231 (380)
290 PRK13647 cbiO cobalt transport 97.7 0.00014 3E-09 64.4 7.2 38 93-134 20-57 (274)
291 PRK15056 manganese/iron transp 97.7 0.00031 6.7E-09 62.1 9.4 36 94-133 23-58 (272)
292 TIGR03873 F420-0_ABC_ATP propo 97.7 0.00011 2.3E-09 64.5 6.4 37 93-133 16-52 (256)
293 PRK08939 primosomal protein Dn 97.7 0.00033 7.2E-09 62.6 9.6 55 89-143 135-191 (306)
294 PRK13540 cytochrome c biogenes 97.7 0.00015 3.2E-09 61.0 7.1 38 93-134 16-53 (200)
295 cd03296 ABC_CysA_sulfate_impor 97.7 0.00012 2.7E-09 63.3 6.7 37 93-133 17-53 (239)
296 PRK14259 phosphate ABC transpo 97.7 0.00041 8.9E-09 61.2 10.1 37 93-133 28-64 (269)
297 PTZ00494 tuzin-like protein; P 97.6 0.014 3E-07 53.9 19.5 163 82-258 368-544 (664)
298 PRK14247 phosphate ABC transpo 97.6 0.00016 3.4E-09 63.2 7.3 37 93-133 18-54 (250)
299 PRK15064 ABC transporter ATP-b 97.6 0.00013 2.8E-09 71.0 7.5 38 93-134 16-53 (530)
300 KOG0736 Peroxisome assembly fa 97.6 0.00083 1.8E-08 65.2 12.5 148 109-281 706-877 (953)
301 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00018 3.9E-09 60.8 7.4 38 93-134 23-60 (207)
302 PRK10787 DNA-binding ATP-depen 97.6 0.0021 4.6E-08 64.9 16.1 52 85-136 322-377 (784)
303 PRK13545 tagH teichoic acids e 97.6 0.00035 7.5E-09 66.3 9.9 38 94-135 40-77 (549)
304 COG1119 ModF ABC-type molybden 97.6 0.00016 3.5E-09 60.8 6.8 38 91-132 44-81 (257)
305 PF13604 AAA_30: AAA domain; P 97.6 0.00082 1.8E-08 56.2 11.2 47 93-142 6-52 (196)
306 PRK13657 cyclic beta-1,2-gluca 97.6 7.6E-05 1.6E-09 73.7 5.7 38 93-134 350-387 (588)
307 PRK10938 putative molybdenum t 97.6 0.00013 2.9E-09 70.3 7.2 38 93-134 18-55 (490)
308 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00049 1.1E-08 70.2 11.5 49 85-133 566-621 (852)
309 cd03297 ABC_ModC_molybdenum_tr 97.6 0.00041 8.8E-09 59.0 9.5 25 109-133 24-48 (214)
310 COG0542 clpA ATP-binding subun 97.6 0.00057 1.2E-08 67.4 11.5 152 84-258 169-346 (786)
311 COG1117 PstB ABC-type phosphat 97.6 0.00072 1.6E-08 55.7 10.2 42 85-130 14-55 (253)
312 PRK09493 glnQ glutamine ABC tr 97.6 0.00018 3.8E-09 62.4 7.3 36 94-133 17-52 (240)
313 cd03300 ABC_PotA_N PotA is an 97.6 7.2E-05 1.6E-09 64.5 4.8 38 93-134 15-52 (232)
314 PRK11300 livG leucine/isoleuci 97.6 0.00037 8.1E-09 61.0 9.4 37 93-133 20-56 (255)
315 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00019 4.2E-09 60.9 7.3 25 109-133 25-49 (211)
316 PF13207 AAA_17: AAA domain; P 97.6 5.1E-05 1.1E-09 58.1 3.5 23 110-132 1-23 (121)
317 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00016 3.4E-09 62.5 6.9 36 94-133 17-52 (236)
318 cd03253 ABCC_ATM1_transporter 97.6 0.0003 6.6E-09 60.8 8.6 37 94-134 17-53 (236)
319 PRK10619 histidine/lysine/argi 97.6 0.00049 1.1E-08 60.3 10.0 38 93-134 20-57 (257)
320 PHA00729 NTP-binding motif con 97.6 0.00032 7E-09 59.1 8.3 26 108-133 17-42 (226)
321 cd03254 ABCC_Glucan_exporter_l 97.6 0.00013 2.9E-09 62.7 6.3 38 93-134 18-55 (229)
322 PRK14273 phosphate ABC transpo 97.6 0.00022 4.8E-09 62.4 7.7 38 93-134 22-59 (254)
323 PRK11176 lipid transporter ATP 97.6 0.00012 2.6E-09 72.2 6.7 39 93-135 358-396 (582)
324 PRK10575 iron-hydroxamate tran 97.6 0.00014 2.9E-09 64.2 6.3 37 93-133 26-62 (265)
325 PRK08118 topology modulation p 97.6 6E-05 1.3E-09 61.3 3.7 33 109-141 2-37 (167)
326 cd01393 recA_like RecA is a b 97.6 0.00048 1E-08 59.1 9.5 46 98-143 9-60 (226)
327 smart00763 AAA_PrkA PrkA AAA d 97.6 8.1E-05 1.7E-09 67.0 4.8 50 85-134 51-104 (361)
328 PRK11650 ugpC glycerol-3-phosp 97.6 6.8E-05 1.5E-09 68.7 4.4 38 93-134 19-56 (356)
329 cd01130 VirB11-like_ATPase Typ 97.6 9.4E-05 2E-09 61.4 4.9 122 93-229 14-136 (186)
330 PRK14249 phosphate ABC transpo 97.6 0.00051 1.1E-08 60.0 9.8 37 94-134 20-56 (251)
331 cd03244 ABCC_MRP_domain2 Domai 97.6 0.00038 8.1E-09 59.5 8.7 37 93-133 19-55 (221)
332 TIGR01420 pilT_fam pilus retra 97.6 0.00034 7.4E-09 63.9 8.8 110 109-231 123-233 (343)
333 cd03252 ABCC_Hemolysin The ABC 97.6 0.00026 5.6E-09 61.3 7.7 36 94-133 18-53 (237)
334 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.00039 8.4E-09 60.2 8.9 37 94-134 19-55 (238)
335 PRK12723 flagellar biosynthesi 97.6 0.0011 2.3E-08 61.1 12.0 27 107-133 173-199 (388)
336 PF14532 Sigma54_activ_2: Sigm 97.6 0.00014 3.1E-09 57.1 5.6 46 88-133 1-46 (138)
337 PRK05022 anaerobic nitric oxid 97.6 0.0051 1.1E-07 59.5 17.2 50 84-133 186-235 (509)
338 PRK15439 autoinducer 2 ABC tra 97.6 7.3E-05 1.6E-09 72.3 4.7 38 93-134 26-63 (510)
339 cd03256 ABC_PhnC_transporter A 97.6 0.00029 6.4E-09 61.1 8.0 36 94-133 17-52 (241)
340 PRK06696 uridine kinase; Valid 97.6 0.00014 3.1E-09 62.2 5.9 47 89-135 2-49 (223)
341 cd03219 ABC_Mj1267_LivG_branch 97.6 0.00031 6.8E-09 60.7 8.1 36 94-133 16-51 (236)
342 PRK11153 metN DL-methionine tr 97.6 0.00016 3.4E-09 66.1 6.5 37 94-134 21-57 (343)
343 COG4152 ABC-type uncharacteriz 97.6 9.6E-05 2.1E-09 62.0 4.5 51 88-142 12-62 (300)
344 PRK15429 formate hydrogenlyase 97.6 0.0033 7.2E-08 63.2 16.3 48 85-132 376-423 (686)
345 PF03215 Rad17: Rad17 cell cyc 97.6 0.00081 1.8E-08 64.4 11.3 50 91-142 25-77 (519)
346 TIGR03411 urea_trans_UrtD urea 97.6 0.00059 1.3E-08 59.2 9.7 36 94-133 18-53 (242)
347 PRK10733 hflB ATP-dependent me 97.6 0.00058 1.3E-08 67.7 10.7 129 109-260 186-337 (644)
348 PRK14250 phosphate ABC transpo 97.6 0.00055 1.2E-08 59.4 9.4 36 94-133 19-54 (241)
349 PRK10771 thiQ thiamine transpo 97.6 0.0003 6.4E-09 60.7 7.7 25 109-133 26-50 (232)
350 TIGR00972 3a0107s01c2 phosphat 97.6 0.00021 4.6E-09 62.3 6.8 38 93-134 16-53 (247)
351 TIGR02857 CydD thiol reductant 97.5 0.00016 3.5E-09 70.4 6.7 38 93-134 337-374 (529)
352 KOG0743 AAA+-type ATPase [Post 97.5 0.0014 3E-08 60.1 12.0 150 109-294 236-414 (457)
353 PRK04132 replication factor C 97.5 0.0041 8.8E-08 62.7 16.4 158 113-291 569-733 (846)
354 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00058 1.3E-08 57.9 9.2 23 108-130 29-51 (213)
355 PRK13652 cbiO cobalt transport 97.5 0.00028 6E-09 62.6 7.5 38 93-134 19-56 (277)
356 KOG0731 AAA+-type ATPase conta 97.5 0.0019 4.2E-08 63.4 13.7 179 84-287 310-522 (774)
357 PRK11231 fecE iron-dicitrate t 97.5 0.00029 6.3E-09 61.7 7.6 37 93-133 17-53 (255)
358 PF02562 PhoH: PhoH-like prote 97.5 0.00075 1.6E-08 56.2 9.4 127 93-228 8-156 (205)
359 TIGR02770 nickel_nikD nickel i 97.5 0.00036 7.8E-09 60.1 7.9 26 109-134 13-38 (230)
360 TIGR01978 sufC FeS assembly AT 97.5 0.00038 8.1E-09 60.5 8.1 35 93-131 15-49 (243)
361 PRK11000 maltose/maltodextrin 97.5 0.00032 6.8E-09 64.8 7.9 37 94-134 19-55 (369)
362 PRK09580 sufC cysteine desulfu 97.5 0.00022 4.8E-09 62.2 6.6 35 94-132 17-51 (248)
363 COG0464 SpoVK ATPases of the A 97.5 0.00095 2.1E-08 64.4 11.5 150 108-281 276-445 (494)
364 PRK04296 thymidine kinase; Pro 97.5 0.00018 3.9E-09 59.9 5.7 111 109-229 3-117 (190)
365 CHL00131 ycf16 sulfate ABC tra 97.5 0.00038 8.3E-09 60.8 8.1 35 93-131 22-56 (252)
366 COG1127 Ttg2A ABC-type transpo 97.5 0.00012 2.6E-09 61.3 4.5 43 89-135 19-61 (263)
367 CHL00095 clpC Clp protease ATP 97.5 0.0012 2.7E-08 67.4 12.7 49 85-133 509-564 (821)
368 PRK13409 putative ATPase RIL; 97.5 0.00051 1.1E-08 67.3 9.6 38 93-135 89-126 (590)
369 PRK11144 modC molybdate transp 97.5 0.00041 8.9E-09 63.6 8.4 26 109-134 25-50 (352)
370 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00084 1.8E-08 58.0 9.9 48 96-143 9-56 (237)
371 TIGR03258 PhnT 2-aminoethylpho 97.5 0.00025 5.5E-09 65.1 7.0 37 94-134 21-57 (362)
372 TIGR03499 FlhF flagellar biosy 97.5 0.00069 1.5E-08 60.1 9.5 28 108-135 194-221 (282)
373 TIGR02237 recomb_radB DNA repa 97.5 0.00017 3.7E-09 61.1 5.5 37 107-143 11-47 (209)
374 PRK13651 cobalt transporter AT 97.5 0.00027 5.9E-09 63.4 7.1 39 93-135 22-60 (305)
375 cd03236 ABC_RNaseL_inhibitor_d 97.5 0.00034 7.4E-09 61.1 7.5 27 109-135 27-53 (255)
376 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00071 1.5E-08 59.3 9.5 119 93-230 68-186 (264)
377 KOG0927 Predicted transporter 97.5 0.00032 7E-09 65.4 7.5 58 180-242 229-292 (614)
378 PRK14272 phosphate ABC transpo 97.5 0.00042 9.1E-09 60.6 8.1 37 93-133 19-55 (252)
379 PRK15177 Vi polysaccharide exp 97.5 0.00028 6.1E-09 59.9 6.8 27 109-135 14-40 (213)
380 PRK14253 phosphate ABC transpo 97.5 0.00036 7.9E-09 60.8 7.6 37 93-133 18-54 (249)
381 cd03295 ABC_OpuCA_Osmoprotecti 97.5 0.00017 3.7E-09 62.6 5.6 36 94-133 17-52 (242)
382 PRK13541 cytochrome c biogenes 97.5 0.00035 7.7E-09 58.4 7.2 26 109-134 27-52 (195)
383 TIGR00968 3a0106s01 sulfate AB 97.5 0.00033 7.1E-09 60.6 7.2 36 94-133 16-51 (237)
384 cd03278 ABC_SMC_barmotin Barmo 97.5 0.00066 1.4E-08 56.8 8.8 22 110-131 24-45 (197)
385 PRK11831 putative ABC transpor 97.5 0.00053 1.1E-08 60.5 8.6 36 94-133 23-58 (269)
386 TIGR01069 mutS2 MutS2 family p 97.5 0.00063 1.4E-08 68.5 10.1 24 108-131 322-345 (771)
387 PRK13643 cbiO cobalt transport 97.5 0.00059 1.3E-08 60.8 9.0 37 94-134 22-58 (288)
388 KOG0734 AAA+-type ATPase conta 97.5 0.0013 2.9E-08 61.2 11.2 151 85-258 304-484 (752)
389 KOG0739 AAA+-type ATPase [Post 97.5 0.03 6.5E-07 48.7 18.5 173 85-283 133-335 (439)
390 PRK09536 btuD corrinoid ABC tr 97.5 9.6E-05 2.1E-09 68.6 4.0 37 93-133 18-54 (402)
391 cd03289 ABCC_CFTR2 The CFTR su 97.5 0.00039 8.5E-09 61.3 7.6 37 93-133 19-55 (275)
392 PRK13649 cbiO cobalt transport 97.5 0.00057 1.2E-08 60.7 8.8 36 94-133 23-58 (280)
393 COG0410 LivF ABC-type branched 97.5 0.00027 5.8E-09 59.0 6.0 51 87-141 12-62 (237)
394 COG1118 CysA ABC-type sulfate/ 97.5 0.00058 1.3E-08 59.4 8.3 27 109-135 29-55 (345)
395 PRK13650 cbiO cobalt transport 97.5 0.00031 6.7E-09 62.3 7.0 37 94-134 23-59 (279)
396 PRK13641 cbiO cobalt transport 97.5 0.00039 8.4E-09 62.0 7.6 38 93-134 22-59 (287)
397 PRK09984 phosphonate/organopho 97.5 0.0002 4.3E-09 63.0 5.7 38 93-134 19-56 (262)
398 TIGR02633 xylG D-xylose ABC tr 97.5 0.00026 5.7E-09 68.4 7.0 36 94-133 276-311 (500)
399 PRK13644 cbiO cobalt transport 97.5 0.00042 9.1E-09 61.3 7.7 38 93-134 17-54 (274)
400 TIGR00064 ftsY signal recognit 97.5 0.0032 6.9E-08 55.5 13.1 36 107-142 71-106 (272)
401 PRK14269 phosphate ABC transpo 97.5 0.00082 1.8E-08 58.5 9.4 36 93-132 17-52 (246)
402 cd03245 ABCC_bacteriocin_expor 97.5 0.00061 1.3E-08 58.2 8.5 37 93-133 19-55 (220)
403 PRK14235 phosphate transporter 97.5 0.00096 2.1E-08 58.8 9.9 37 93-133 34-70 (267)
404 cd03299 ABC_ModC_like Archeal 97.5 0.001 2.2E-08 57.4 9.9 25 109-133 26-50 (235)
405 PRK11432 fbpC ferric transport 97.5 0.00028 6.1E-09 64.5 6.6 37 94-134 22-58 (351)
406 PRK14237 phosphate transporter 97.5 0.00092 2E-08 58.9 9.7 36 94-133 36-71 (267)
407 TIGR03005 ectoine_ehuA ectoine 97.5 0.00067 1.4E-08 59.3 8.7 37 94-134 16-52 (252)
408 TIGR00958 3a01208 Conjugate Tr 97.5 0.00024 5.2E-09 71.6 6.6 39 93-135 496-534 (711)
409 COG1122 CbiO ABC-type cobalt t 97.4 0.00049 1.1E-08 58.9 7.5 39 94-136 20-58 (235)
410 TIGR02314 ABC_MetN D-methionin 97.4 0.00027 5.9E-09 64.3 6.2 38 93-134 20-57 (343)
411 TIGR02203 MsbA_lipidA lipid A 97.4 0.00031 6.7E-09 69.2 7.1 38 94-135 348-385 (571)
412 TIGR03265 PhnT2 putative 2-ami 97.4 0.00025 5.4E-09 64.9 6.0 26 109-134 31-56 (353)
413 PRK07667 uridine kinase; Provi 97.4 0.00037 8E-09 58.2 6.6 41 95-135 4-44 (193)
414 PRK11174 cysteine/glutathione 97.4 0.0005 1.1E-08 67.9 8.5 35 94-132 366-400 (588)
415 PRK14242 phosphate transporter 97.4 0.00055 1.2E-08 59.9 8.0 36 93-132 21-56 (253)
416 smart00534 MUTSac ATPase domai 97.4 8.1E-05 1.8E-09 61.7 2.5 21 110-130 1-21 (185)
417 PRK14258 phosphate ABC transpo 97.4 0.00047 1E-08 60.6 7.5 38 93-134 22-59 (261)
418 TIGR01189 ccmA heme ABC export 97.4 0.00066 1.4E-08 56.9 8.1 36 94-133 16-51 (198)
419 PRK14243 phosphate transporter 97.4 0.00074 1.6E-08 59.4 8.7 36 93-132 25-60 (264)
420 PRK14267 phosphate ABC transpo 97.4 0.00052 1.1E-08 60.0 7.7 38 93-134 19-56 (253)
421 TIGR03375 type_I_sec_LssB type 97.4 0.00018 3.8E-09 72.5 5.3 39 93-135 480-518 (694)
422 COG4988 CydD ABC-type transpor 97.4 0.00041 8.9E-09 65.5 7.3 37 94-134 337-373 (559)
423 PRK10419 nikE nickel transport 97.4 0.00097 2.1E-08 58.8 9.4 37 93-133 27-63 (268)
424 PRK15439 autoinducer 2 ABC tra 97.4 0.00035 7.5E-09 67.7 7.0 25 109-133 290-314 (510)
425 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0005 1.1E-08 59.4 7.4 45 99-143 10-60 (235)
426 PRK10253 iron-enterobactin tra 97.4 0.00042 9.1E-09 61.0 6.9 38 93-134 22-59 (265)
427 PRK10744 pstB phosphate transp 97.4 0.00061 1.3E-08 59.8 7.9 37 93-133 28-64 (260)
428 TIGR02142 modC_ABC molybdenum 97.4 0.00067 1.4E-08 62.4 8.4 25 109-133 24-48 (354)
429 COG1134 TagH ABC-type polysacc 97.4 0.0011 2.3E-08 56.0 8.8 39 94-136 43-81 (249)
430 PRK10762 D-ribose transporter 97.4 0.00019 4E-09 69.4 5.0 38 93-134 19-56 (501)
431 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0014 3.1E-08 52.2 9.2 116 109-229 3-139 (159)
432 PRK14270 phosphate ABC transpo 97.4 0.00099 2.1E-08 58.2 9.1 36 94-133 20-55 (251)
433 PRK10790 putative multidrug tr 97.4 0.00018 3.8E-09 71.1 4.9 39 93-135 356-394 (592)
434 COG1419 FlhF Flagellar GTP-bin 97.4 0.0013 2.8E-08 59.9 9.8 99 108-212 203-310 (407)
435 cd03243 ABC_MutS_homologs The 97.4 0.00028 6.1E-09 59.4 5.4 23 109-131 30-52 (202)
436 TIGR01842 type_I_sec_PrtD type 97.4 0.00031 6.8E-09 68.6 6.5 39 93-135 333-371 (544)
437 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00035 7.5E-09 60.8 6.0 37 109-145 70-106 (274)
438 PLN03073 ABC transporter F fam 97.4 0.00033 7.3E-09 70.0 6.8 36 92-131 191-226 (718)
439 PRK14263 phosphate ABC transpo 97.4 0.00049 1.1E-08 60.4 7.1 43 87-133 17-59 (261)
440 PRK09452 potA putrescine/sperm 97.4 0.00035 7.5E-09 64.4 6.4 37 94-134 30-66 (375)
441 PRK11288 araG L-arabinose tran 97.4 0.00037 8E-09 67.3 6.9 25 109-133 280-304 (501)
442 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0064 1.4E-07 57.1 14.4 41 93-133 90-135 (634)
443 PRK13635 cbiO cobalt transport 97.4 0.00053 1.1E-08 60.8 7.3 39 93-135 22-60 (279)
444 PRK14241 phosphate transporter 97.4 0.00044 9.5E-09 60.7 6.8 37 93-133 19-55 (258)
445 PRK14246 phosphate ABC transpo 97.4 0.00046 9.9E-09 60.5 6.8 41 89-133 21-61 (257)
446 PRK14245 phosphate ABC transpo 97.4 0.00045 9.7E-09 60.3 6.8 34 94-131 19-52 (250)
447 PRK14265 phosphate ABC transpo 97.4 0.0011 2.4E-08 58.6 9.4 36 93-132 35-70 (274)
448 PRK14238 phosphate transporter 97.4 0.001 2.2E-08 58.8 9.1 36 94-133 40-75 (271)
449 TIGR02868 CydC thiol reductant 97.4 0.00015 3.3E-09 70.6 4.2 39 93-135 350-388 (529)
450 PRK13549 xylose transporter AT 97.4 0.0003 6.5E-09 68.1 6.1 38 93-134 20-57 (506)
451 PRK14256 phosphate ABC transpo 97.4 0.0012 2.7E-08 57.6 9.4 36 94-133 20-55 (252)
452 PRK13640 cbiO cobalt transport 97.4 0.00065 1.4E-08 60.4 7.7 37 94-134 23-59 (282)
453 TIGR01846 type_I_sec_HlyB type 97.4 0.00021 4.5E-09 72.0 5.1 39 93-135 472-510 (694)
454 PRK14240 phosphate transporter 97.4 0.00058 1.3E-08 59.6 7.3 36 93-132 18-53 (250)
455 PRK14974 cell division protein 97.4 0.0036 7.7E-08 56.6 12.4 35 107-141 139-173 (336)
456 COG4586 ABC-type uncharacteriz 97.4 0.00078 1.7E-08 57.6 7.5 49 180-229 164-218 (325)
457 PRK14248 phosphate ABC transpo 97.4 0.00047 1E-08 60.9 6.6 36 93-132 36-71 (268)
458 PRK14271 phosphate ABC transpo 97.4 0.00045 9.7E-09 61.2 6.5 37 93-133 36-72 (276)
459 PRK14262 phosphate ABC transpo 97.4 0.0012 2.7E-08 57.5 9.2 36 94-133 19-54 (250)
460 cd03283 ABC_MutS-like MutS-lik 97.4 0.00029 6.2E-09 59.0 4.9 24 109-132 26-49 (199)
461 PRK14722 flhF flagellar biosyn 97.4 0.0018 4E-08 59.2 10.4 28 108-135 137-164 (374)
462 cd03240 ABC_Rad50 The catalyti 97.4 0.0011 2.4E-08 55.9 8.5 58 183-243 132-196 (204)
463 PRK10418 nikD nickel transport 97.4 0.0013 2.8E-08 57.6 9.2 37 94-134 19-55 (254)
464 PRK13549 xylose transporter AT 97.4 0.00054 1.2E-08 66.3 7.5 25 109-133 289-313 (506)
465 PRK09700 D-allose transporter 97.4 0.00024 5.2E-09 68.8 5.1 37 93-133 20-56 (510)
466 PRK14274 phosphate ABC transpo 97.3 0.0019 4E-08 56.7 10.2 36 94-133 28-63 (259)
467 cd01121 Sms Sms (bacterial rad 97.3 0.0011 2.3E-08 61.0 8.9 36 108-143 82-117 (372)
468 PRK13646 cbiO cobalt transport 97.3 0.00057 1.2E-08 60.9 7.0 38 93-134 22-59 (286)
469 COG3910 Predicted ATPase [Gene 97.3 0.0022 4.7E-08 51.8 9.4 23 109-131 38-60 (233)
470 cd03288 ABCC_SUR2 The SUR doma 97.3 0.0007 1.5E-08 59.3 7.5 36 94-133 37-72 (257)
471 PRK10762 D-ribose transporter 97.3 0.00041 8.9E-09 67.1 6.5 25 109-133 279-303 (501)
472 PRK10789 putative multidrug tr 97.3 0.00027 5.9E-09 69.4 5.3 39 93-135 330-368 (569)
473 PRK14261 phosphate ABC transpo 97.3 0.0015 3.2E-08 57.2 9.4 35 93-131 21-55 (253)
474 PRK14239 phosphate transporter 97.3 0.0015 3.2E-08 57.1 9.4 34 94-131 21-54 (252)
475 cd00983 recA RecA is a bacter 97.3 0.00086 1.9E-08 60.0 7.9 36 108-143 55-90 (325)
476 TIGR02012 tigrfam_recA protein 97.3 0.00078 1.7E-08 60.3 7.6 37 107-143 54-90 (321)
477 PRK13636 cbiO cobalt transport 97.3 0.00058 1.2E-08 60.8 6.9 37 93-133 21-57 (283)
478 cd01124 KaiC KaiC is a circadi 97.3 0.00053 1.2E-08 56.9 6.3 33 111-143 2-34 (187)
479 KOG0735 AAA+-type ATPase [Post 97.3 0.0033 7.2E-08 60.7 12.0 150 110-285 703-872 (952)
480 TIGR03269 met_CoM_red_A2 methy 97.3 0.00064 1.4E-08 66.1 7.7 36 93-132 15-50 (520)
481 PRK10982 galactose/methyl gala 97.3 0.00059 1.3E-08 65.8 7.3 26 109-134 275-300 (491)
482 PRK12726 flagellar biosynthesi 97.3 0.0025 5.5E-08 57.9 10.7 35 108-142 206-240 (407)
483 PRK13639 cbiO cobalt transport 97.3 0.00069 1.5E-08 60.0 7.2 37 93-133 17-53 (275)
484 PRK11607 potG putrescine trans 97.3 0.00051 1.1E-08 63.4 6.6 36 94-133 35-70 (377)
485 TIGR01192 chvA glucan exporter 97.3 0.00033 7.1E-09 69.0 5.6 37 94-134 351-387 (585)
486 PRK13634 cbiO cobalt transport 97.3 0.00092 2E-08 59.7 8.0 37 94-134 23-59 (290)
487 PRK14275 phosphate ABC transpo 97.3 0.0014 3.1E-08 58.3 9.2 36 93-132 54-89 (286)
488 COG1618 Predicted nucleotide k 97.3 0.00031 6.8E-09 55.0 4.3 27 109-135 6-32 (179)
489 PRK00771 signal recognition pa 97.3 0.012 2.7E-07 55.2 15.6 29 107-135 94-122 (437)
490 PRK10982 galactose/methyl gala 97.3 0.00024 5.2E-09 68.5 4.5 38 93-134 13-50 (491)
491 COG4088 Predicted nucleotide k 97.3 0.0008 1.7E-08 55.0 6.7 28 109-136 2-29 (261)
492 cd03291 ABCC_CFTR1 The CFTR su 97.3 0.00083 1.8E-08 59.5 7.5 39 93-135 52-90 (282)
493 PRK14236 phosphate transporter 97.3 0.0017 3.6E-08 57.5 9.4 37 93-133 40-76 (272)
494 PRK10070 glycine betaine trans 97.3 0.0016 3.4E-08 60.6 9.5 26 109-134 55-80 (400)
495 PRK10851 sulfate/thiosulfate t 97.3 0.0012 2.6E-08 60.5 8.7 26 109-134 29-54 (353)
496 PRK11288 araG L-arabinose tran 97.3 0.00028 6.1E-09 68.2 4.9 37 93-133 19-55 (501)
497 PRK13531 regulatory ATPase Rav 97.3 0.00026 5.7E-09 66.2 4.4 46 85-134 20-65 (498)
498 PRK14251 phosphate ABC transpo 97.3 0.00058 1.2E-08 59.7 6.4 37 93-133 19-55 (251)
499 KOG0058 Peptide exporter, ABC 97.3 0.00033 7.1E-09 67.7 5.1 38 93-134 483-520 (716)
500 PRK10820 DNA-binding transcrip 97.3 0.0098 2.1E-07 57.6 15.2 47 85-131 204-250 (520)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-57 Score=467.15 Aligned_cols=367 Identities=36% Similarity=0.692 Sum_probs=318.2
Q ss_pred CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCC-CChhHHHhhhhhcccccccC
Q 017364 1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD-RNEPEFIVDIVKEISCKISA 79 (373)
Q Consensus 1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~ 79 (373)
+|+||||+|||+|||+|+|.|+++|.++++.. ..+++++|++||+++++++|+.+.. ..|++++++|+.+|..++..
T Consensus 100 ~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~ 177 (1153)
T PLN03210 100 LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNL 177 (1153)
T ss_pred eEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhcc
Confidence 59999999999999999999999999876653 3457999999999999999998765 77999999999999999887
Q ss_pred cc-ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec--hh---hhc---
Q 017364 80 KS-ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV--RE---ISK--- 150 (373)
Q Consensus 80 ~~-~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~---~~~--- 150 (373)
.+ ...+.+|||+..++++..+|..+.+++++|+|+||||+||||||+.+++++..+|+..+|+... .. ...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccc
Confidence 76 5667899999999999999987777899999999999999999999999999999988887531 10 000
Q ss_pred ---ccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 017364 151 ---KSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRD 227 (373)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~ 227 (373)
......+..+++..++......... ...+++.+.++++||||||+|+..+++.+.....++++|++||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 0112334555566655443222211 245778889999999999999999999998888888999999999999
Q ss_pred hhhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH
Q 017364 228 KHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR 307 (373)
Q Consensus 228 ~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~ 307 (373)
..++...+....|+++.|+.++|++||+..+|+...+.+...+++.+|+++|+|+||||+++|++|++++..+|..++..
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99988777788999999999999999999999877666678899999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHhchhCCch-hhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364 308 LERDPENEILDVLQISFDGLKE-TEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY 373 (373)
Q Consensus 308 l~~~~~~~i~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~L 373 (373)
++......+..+|+.||+.|++ .+|.||+++|||+++.+.+.+..++..+++.+..+++.|++|||
T Consensus 414 L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksL 480 (1153)
T PLN03210 414 LRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSL 480 (1153)
T ss_pred HHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCC
Confidence 9988888999999999999986 59999999999999999999999999999999999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.9e-42 Score=307.41 Aligned_cols=269 Identities=33% Similarity=0.501 Sum_probs=209.3
Q ss_pred chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH--HhccccceEEEeechhhhcccCHHHHHHHHHHHHhC
Q 017364 90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL--ISHEFEASCFLANVREISKKSGLVFLQKQLISQLLN 167 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
|+.++++|.+.|....++.++|+|+|++|+||||||..++++ ++.+|+.++|+.. ........+...++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence 788999999999986677899999999999999999999988 7889998999863 3334446777778877655
Q ss_pred CCCC--CCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCC-CceEeCCC
Q 017364 168 LPDS--GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV-DEVYMHEH 244 (373)
Q Consensus 168 ~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~-~~~~~l~~ 244 (373)
.... ...+.......+.+.+.++++||||||+++...++.+...++....|++||+|||+..++..... ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5332 34566778889999999999999999999999998888777666779999999999987665533 57899999
Q ss_pred CCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCC------CCchH
Q 017364 245 LNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESALQRLERD------PENEI 316 (373)
Q Consensus 245 L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~------~~~~i 316 (373)
|+.+|+++||.+.++... ...+...+.+++|++.|+|+||||.++|++|+. .+..+|...++.+... ....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999987654 223344567899999999999999999999954 3567788888776543 24679
Q ss_pred HHHHHhchhCCchhhHHHHhhhcccCCCCC--HHHHHHHHHhCCCCcc
Q 017364 317 LDVLQISFDGLKETEKKIFLDIACFYKGKY--IDYVTKILNYCDFDPI 362 (373)
Q Consensus 317 ~~~l~~s~~~L~~~~~~~l~~la~f~~~~~--~~~l~~l~~~~~~~~~ 362 (373)
..++..||+.|+++.|+||.+||+||.++. .+.|+++|.++|+...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999875 9999999999998654
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-41 Score=334.80 Aligned_cols=280 Identities=30% Similarity=0.400 Sum_probs=242.3
Q ss_pred ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH---HhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364 88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL---ISHEFEASCFLANVREISKKSGLVFLQKQLISQ 164 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
||.++.++.+...|..... .+++|+||||+||||||+.+++. +..+|+..+|+. +++......++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999987654 89999999999999999999985 567899999998 67788888999999988
Q ss_pred HhCCCCC-CCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-cCCCceEeC
Q 017364 165 LLNLPDS-GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA-HGVDEVYMH 242 (373)
Q Consensus 165 ~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~-~~~~~~~~l 242 (373)
+...... ...+.......+.+.|.++|+||||||+|+...|+.+...++...+|++|++|||+..++.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 7553322 22334677888999999999999999999999999999999988889999999999999988 777788999
Q ss_pred CCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCC-------CC
Q 017364 243 EHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESALQRLERD-------PE 313 (373)
Q Consensus 243 ~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~-------~~ 313 (373)
+.|+++|||.||++.++... ...+..++++++++++|+|+|||+..+|+.|+. .+..+|+.+++.+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999997753 333458899999999999999999999999987 5677999999987543 13
Q ss_pred chHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCc------------ccchhhhhccCC
Q 017364 314 NEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDP------------IIGIGGLIENLY 373 (373)
Q Consensus 314 ~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~------------~~~l~~L~~~~L 373 (373)
+.+..++..||+.|+++.|.||+|||+||+++ +.+.|+.+|+++||.. ...++.|++++|
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~L 468 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASL 468 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHH
Confidence 56889999999999999999999999999998 5789999999999642 356777777764
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=4.3e-14 Score=145.99 Aligned_cols=267 Identities=15% Similarity=0.114 Sum_probs=160.7
Q ss_pred ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..+..+|-|...++.+... ...+++.|+||+|.||||++..++... +.+.|+. ... ...+...+...+
T Consensus 11 ~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~~l 78 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFASYL 78 (903)
T ss_pred CCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHHHH
Confidence 3456788888777766532 235899999999999999999988632 2678885 221 122333333444
Q ss_pred HHHHhCCCCC------------CCcchhhhHHHHHHhh-C-CCceEEEecccccH------HHHHHHhcCCCCCCCCcEE
Q 017364 162 ISQLLNLPDS------------GVWNVYDGMNMIRSRL-R-HKKVLLVIDDVIEL------QQLESLAGKHDWFGIGSRI 221 (373)
Q Consensus 162 ~~~~~~~~~~------------~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~------~~l~~l~~~~~~~~~g~~i 221 (373)
+..+...... ...+.......+...+ . +.+++|||||++.. +.+..+.... .++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~l 155 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTL 155 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEE
Confidence 4433211100 0012222233333333 2 67899999999643 2344555443 346778
Q ss_pred EEEeCChhhHh--hcC-CCceEeCC----CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364 222 FITSRDKHLLM--AHG-VDEVYMHE----HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294 (373)
Q Consensus 222 liTtR~~~~~~--~~~-~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 294 (373)
|+|||...-.. ... ......+. +|+.+|+.+||....+.. -..+...++++.|+|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 89999842111 110 12234455 999999999998765322 1235578999999999999999988775
Q ss_pred CCCHHHHHHHHHHhcCCCCchHHHHHHh-chhCCchhhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccC
Q 017364 295 GRTIAEWESALQRLERDPENEILDVLQI-SFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENL 372 (373)
Q Consensus 295 ~~~~~~~~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~ 372 (373)
..... .......+...+...+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+.. +....++.|.+..
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~ 305 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQG 305 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCC
Confidence 43210 1111122212123456665444 48999999999999999987 77777666665432 2345555555443
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.61 E-value=2.1e-14 Score=124.25 Aligned_cols=198 Identities=22% Similarity=0.245 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH------HHH
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL------QKQ 160 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~ 160 (373)
|+||+.+++.|...+..+.. +.+.|+|+.|+|||+|++.+.+.........+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~--~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPS--QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--S--SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcC--cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 79999999999999987533 789999999999999999999988554334444432211110 001111 111
Q ss_pred HHHHH---hCCCC------CCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----------HHHHHhcCCCCCCCC
Q 017364 161 LISQL---LNLPD------SGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----------QLESLAGKHDWFGIG 218 (373)
Q Consensus 161 ~~~~~---~~~~~------~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----------~l~~l~~~~~~~~~g 218 (373)
+...+ ..... ............+.+.+ .+++++||+||++... .+..+...... ..+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 11111 11100 01112222333333333 2345999999986544 12233333221 223
Q ss_pred cEEEEEeCChhhHhh--------cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 219 SRIFITSRDKHLLMA--------HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 219 ~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
..+++++........ .+....+.+++|+.+++.+++....... ...+...+..++|+..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 445555555544333 2233459999999999999998765322 111234566899999999999998753
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=7e-13 Score=123.91 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=150.2
Q ss_pred ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~ 158 (373)
..|+.++||+++++.+...+.+. ...++.+.|+|++|+|||++++.+++.+..... ..+.+.++ ........+.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~---~~~~~~~~~~ 103 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC---QIDRTRYAIF 103 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC---CcCCCHHHHH
Confidence 45678999999999999998643 233466889999999999999999998765542 22222222 2223445666
Q ss_pred HHHHHHHhCC-CCCCCcchhhhHHHHHHhhC--CCceEEEecccccHH------HHHHHhcCCCCC-CCCcEEEEEeCCh
Q 017364 159 KQLISQLLNL-PDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIELQ------QLESLAGKHDWF-GIGSRIFITSRDK 228 (373)
Q Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~l~~l~~~~~~~-~~g~~iliTtR~~ 228 (373)
..++..+.+. .+....+.......+.+.+. +++.+||||+++... .+..+....... +.+..+|.++.+.
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 6777776542 22222345555666666654 456899999997643 344444322211 1133366666654
Q ss_pred hhHhhc-------CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh----CCCchHHHHHHHHh----
Q 017364 229 HLLMAH-------GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA----GGLPLALKVLGSFL---- 293 (373)
Q Consensus 229 ~~~~~~-------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l---- 293 (373)
.+.... .....+.++|++.++..+++..++...........+..+.+++.+ |..+.++..+-...
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 332211 112467899999999999998776321111112234455555555 44666666654322
Q ss_pred -cCC---CHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364 294 -FGR---TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY 342 (373)
Q Consensus 294 -~~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~ 342 (373)
.+. +......+++.+ -...+...+..||.++|.++..++...
T Consensus 264 ~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~ 309 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLL 309 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 345555555544 123445668899999998888777543
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.51 E-value=1.3e-11 Score=114.24 Aligned_cols=249 Identities=19% Similarity=0.131 Sum_probs=143.4
Q ss_pred ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhcccCH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISKKSGL 154 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 154 (373)
..|+.++||+.+++.|...+.+. ....+.+.|+|++|+|||++++.+++.+..... ..+.+.++ ......
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~---~~~~~~ 88 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC---QILDTL 88 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC---CCCCCH
Confidence 34468999999999999998742 223467899999999999999999987654322 12222222 222344
Q ss_pred HHHHHHHHHHHhC--CCC-CCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----HHHHHhcCC---CCCCCCcEE
Q 017364 155 VFLQKQLISQLLN--LPD-SGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----QLESLAGKH---DWFGIGSRI 221 (373)
Q Consensus 155 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~l~~l~~~~---~~~~~g~~i 221 (373)
..+...++..+.+ ... ....+..+....+.+.+ .+++.+||||+++... .+..+.... ...+....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 5666677776642 211 11123334444455554 3567899999997651 233333221 111123445
Q ss_pred EEEeCChhhHhhc------C-CCceEeCCCCCHhHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 222 FITSRDKHLLMAH------G-VDEVYMHEHLNYDEALGLFCLKAF---KSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 222 liTtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
|.+++.......+ . ....+.++|++.++..+++..++. ......+...+.+..++..+.|.|..+..+..
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666544332111 1 124688999999999999988763 11112222223455566677788865544332
Q ss_pred Hh------cC---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcc
Q 017364 292 FL------FG---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIAC 340 (373)
Q Consensus 292 ~l------~~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~ 340 (373)
.. .+ -+.+....+.+.+. ...+..++..||.+++.++..++.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 11 12344444444431 234456678999998877777663
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=4.4e-13 Score=120.73 Aligned_cols=249 Identities=16% Similarity=0.104 Sum_probs=144.9
Q ss_pred cCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..|||++.+++.+..++... ....+.+.|+|++|+|||+||+.+++.+...+. .... ........ ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~---~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG---PALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eecc---chhcCchh-HHHH
Confidence 46999999999998888631 223466889999999999999999987754321 1110 00000011 1111
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCC-------------------CCCCCCcE
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKH-------------------DWFGIGSR 220 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~-------------------~~~~~g~~ 220 (373)
+.. .+...+|++|+++.. ...+.+...+ ....+.+-
T Consensus 76 l~~-----------------------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 76 LTN-----------------------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred HHh-----------------------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 111 112345666665421 1111111100 00012344
Q ss_pred EEEEeCChhhHhh--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCH
Q 017364 221 IFITSRDKHLLMA--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTI 298 (373)
Q Consensus 221 iliTtR~~~~~~~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 298 (373)
|..|++...+... ......+.+++++.++..+++.+.+..... ....+....|++.|+|.|..+..++..+.
T Consensus 133 i~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~---- 206 (305)
T TIGR00635 133 VGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVR---- 206 (305)
T ss_pred EEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHH----
Confidence 4556665433221 113456789999999999999887753222 23356788999999999987766665431
Q ss_pred HHHHHHH-HHhcCCCC---chHHHHHHhchhCCchhhHHHHh-hhcccCCC-CCHHHHHHHHHhCCCCcccchh-hhhcc
Q 017364 299 AEWESAL-QRLERDPE---NEILDVLQISFDGLKETEKKIFL-DIACFYKG-KYIDYVTKILNYCDFDPIIGIG-GLIEN 371 (373)
Q Consensus 299 ~~~~~~l-~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~~ 371 (373)
..+. ..-..... ......+...+..+++.++..|. .++.+..+ ++.+.+...++.+.......++ .|+++
T Consensus 207 ---~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 207 ---DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQI 283 (305)
T ss_pred ---HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHc
Confidence 1000 00000011 11122245567889998888777 44666543 6789999999888888888888 59887
Q ss_pred CC
Q 017364 372 LY 373 (373)
Q Consensus 372 ~L 373 (373)
.|
T Consensus 284 ~l 285 (305)
T TIGR00635 284 GF 285 (305)
T ss_pred CC
Confidence 65
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.49 E-value=2.2e-13 Score=123.63 Aligned_cols=254 Identities=19% Similarity=0.127 Sum_probs=149.1
Q ss_pred cccccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364 81 SETLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 81 ~~~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
|.....|+|++..++.+...+.. .....+.+.|+|++|+|||+||+.+++.+...+ .......... ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~----~~~~~~~~~~----~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI----RITSGPALEK----PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe----EEEecccccC----hHH
Confidence 34456799999999998877763 223356789999999999999999999875432 1111100000 001
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--H---HHHHhcCCC----------------CCC
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--Q---LESLAGKHD----------------WFG 216 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~---l~~l~~~~~----------------~~~ 216 (373)
...++.. + ....+|++|+++... . +...+.... ...
T Consensus 93 l~~~l~~----------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 93 LAAILTN----------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHHHHHh----------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1111111 1 223466777765321 1 111111000 001
Q ss_pred CCcEEEEEeCChhhHhhc--CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364 217 IGSRIFITSRDKHLLMAH--GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 294 (373)
+.+-|..|++...+...+ .....+.+++++.++..+++.+.+...... ..++.+..|++.|+|.|..+..+...+.
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 234344566544322211 123468999999999999999887543322 3456789999999999977666665441
Q ss_pred CCCHHHHHHHHHHhcCCCC---chHHHHHHhchhCCchhhHHHHh-hhcccCCC-CCHHHHHHHHHhCCCCcccchh-hh
Q 017364 295 GRTIAEWESALQRLERDPE---NEILDVLQISFDGLKETEKKIFL-DIACFYKG-KYIDYVTKILNYCDFDPIIGIG-GL 368 (373)
Q Consensus 295 ~~~~~~~~~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L 368 (373)
.|.... .-+.... ......+...+..|++..+..+. .+..|..+ +..+.+...++.+....+..++ .|
T Consensus 228 -----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 228 -----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred -----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 111110 0000111 12223445567789998888886 66677654 5789999999887777777788 78
Q ss_pred hccCC
Q 017364 369 IENLY 373 (373)
Q Consensus 369 ~~~~L 373 (373)
++..|
T Consensus 302 i~~~l 306 (328)
T PRK00080 302 IQQGF 306 (328)
T ss_pred HHcCC
Confidence 77654
No 10
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.49 E-value=6.9e-14 Score=132.16 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=124.7
Q ss_pred EEeeeecccccccccccchHHHHHHHhHHHhh----------hhHHHHHHHHHHHHHHHhhcCCcCCCCChhHHHhhhhh
Q 017364 2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFR----------ENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVK 71 (373)
Q Consensus 2 v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (373)
|++.+++++++.++.|.|||..++++.+++.+ +..++++.|.++....++.+. ...+..+..+++..
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k---~a~sr~k~l~k~~~ 292 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK---KAKSRIKRLEKLEA 292 (530)
T ss_pred HhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHHHh
Confidence 67889999999999999999999998877522 222333334433333322211 11222233333331
Q ss_pred c--cc-ccc--c-C--ccccc---------------cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHH
Q 017364 72 E--IS-CKI--S-A--KSETL---------------KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVV 128 (373)
Q Consensus 72 ~--v~-~~~--~-~--~~~~~---------------~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~ 128 (373)
. .. +.. . . ..+.+ ..+-|....++.+...+..+ ..|+|+|++|+|||||.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g----~riaiiG~NG~GKSTLlk~l 368 (530)
T COG0488 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRG----DRIAIVGPNGAGKSTLLKLL 368 (530)
T ss_pred hhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCC----CEEEEECCCCCCHHHHHHHH
Confidence 0 10 100 0 0 00000 11212222344455444455 67999999999999999999
Q ss_pred HHHHhccccceEEEeec--hhhhccc-------CH------------HHHHHHHHHHHhCCCC-----CCCcchhh-hHH
Q 017364 129 YDLISHEFEASCFLANV--REISKKS-------GL------------VFLQKQLISQLLNLPD-----SGVWNVYD-GMN 181 (373)
Q Consensus 129 ~~~~~~~f~~~~~~~~~--~~~~~~~-------~~------------~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~ 181 (373)
.....+.-+.+.|-..+ .++.+.. .. ....+..+..++=... ...-+-.+ ..-
T Consensus 369 ~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl 448 (530)
T COG0488 369 AGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL 448 (530)
T ss_pred hhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH
Confidence 88766553323322111 1111111 11 1112222222111100 00112222 233
Q ss_pred HHHHhhCCCceEEEec------ccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364 182 MIRSRLRHKKVLLVID------DVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEH 244 (373)
Q Consensus 182 ~l~~~l~~~~~LlvlD------dv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~ 244 (373)
.+...+..++.+|||| |+++.+.++..+..++ |+ ||++||++.+.... +..++.+.+
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhh-cceEEEEcC
Confidence 4556667889999999 4567777888888876 66 99999999998886 466777764
No 11
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.48 E-value=1.6e-12 Score=130.57 Aligned_cols=265 Identities=16% Similarity=0.231 Sum_probs=163.1
Q ss_pred cccchhhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhhhccc---CHHHHHHHH
Q 017364 87 LVGLDSRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREISKKS---GLVFLQKQL 161 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~---~~~~~~~~~ 161 (373)
++||+.+++.|...+..-+.+ ..++.+.|.+|||||+|++++...+... ...++.. +.+..... .+....+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 789999999999988754333 5799999999999999999999987765 2222211 11111111 112222222
Q ss_pred HHHHhCCCCCC---------------------------------C-------cchhhh-----HHHHHHhh-CCCceEEE
Q 017364 162 ISQLLNLPDSG---------------------------------V-------WNVYDG-----MNMIRSRL-RHKKVLLV 195 (373)
Q Consensus 162 ~~~~~~~~~~~---------------------------------~-------~~~~~~-----~~~l~~~l-~~~~~Llv 195 (373)
..+++...... . ...... ...+.... ..++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 22221111000 0 000011 11122222 45699999
Q ss_pred ecccc-----cHHHHHHHhcCCC--CC-CCCcEEEEEeCCh--hhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364 196 IDDVI-----ELQQLESLAGKHD--WF-GIGSRIFITSRDK--HLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPW 265 (373)
Q Consensus 196 lDdv~-----~~~~l~~l~~~~~--~~-~~g~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 265 (373)
+||+. +..-+..++.... .+ .+....+.|.+.. .........+.+.|.||+..+...+.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99993 2233444444332 00 0111122233322 1112223446899999999999999988875432
Q ss_pred chHHHHHHHHHHHhCCCchHHHHHHHHhcCC-------CHHHHHHHHHHhcCCC-CchHHHHHHhchhCCchhhHHHHhh
Q 017364 266 KGYEQLSKSVVKYAGGLPLALKVLGSFLFGR-------TIAEWESALQRLERDP-ENEILDVLQISFDGLKETEKKIFLD 337 (373)
Q Consensus 266 ~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~~~~l~~ 337 (373)
....+..+.|++++.|+|+++..+...+... +...|......+.... ..++...+...++.||...|.++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2335678999999999999999999888542 3445655555443322 2335557889999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHh
Q 017364 338 IACFYKGKYIDYVTKILNY 356 (373)
Q Consensus 338 la~f~~~~~~~~l~~l~~~ 356 (373)
.||+++.++.+.|..++..
T Consensus 317 AA~iG~~F~l~~La~l~~~ 335 (849)
T COG3899 317 AACIGNRFDLDTLAALAED 335 (849)
T ss_pred HHHhCccCCHHHHHHHHhh
Confidence 9999999998888888764
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.41 E-value=3e-11 Score=106.83 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=104.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH----
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR---- 184 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 184 (373)
+.++|+|++|+|||||++.+++.+...-...+++. ........+...+...+ +.+... .+.......+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~l-G~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADF-GLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHc-CCCCCC-CCHHHHHHHHHHHHH
Confidence 68999999999999999999988763311222322 11223445555555543 332221 11122222222
Q ss_pred Hh-hCCCceEEEecccccH--HHHHHHh---cCCCCCCCCcEEEEEeCChhhHhhc----------CCCceEeCCCCCHh
Q 017364 185 SR-LRHKKVLLVIDDVIEL--QQLESLA---GKHDWFGIGSRIFITSRDKHLLMAH----------GVDEVYMHEHLNYD 248 (373)
Q Consensus 185 ~~-l~~~~~LlvlDdv~~~--~~l~~l~---~~~~~~~~g~~iliTtR~~~~~~~~----------~~~~~~~l~~L~~~ 248 (373)
.. ..+++.++|+||++.. ..++.+. ...........|++|.... +.... .....+.+++|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 22 2677889999998753 2344332 2211111223445555432 21111 12346789999999
Q ss_pred HHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 249 EALGLFCLKAFKSH--KPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 249 ea~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
|..+++........ .......+..+.|++.++|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987653221 1122345789999999999999999999876
No 13
>PF05729 NACHT: NACHT domain
Probab=99.35 E-value=1.7e-11 Score=100.10 Aligned_cols=142 Identities=23% Similarity=0.284 Sum_probs=83.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMI 183 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (373)
+++.|+|.+|+||||+++.++..+..... ...++..............+...+....... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHHH
Confidence 57899999999999999999988765432 2233333333333222222222332222111 11111111111
Q ss_pred HHhhCCCceEEEecccccHHH-------------HHHHhcCCCCCCCCcEEEEEeCChhh---HhhcCCCceEeCCCCCH
Q 017364 184 RSRLRHKKVLLVIDDVIELQQ-------------LESLAGKHDWFGIGSRIFITSRDKHL---LMAHGVDEVYMHEHLNY 247 (373)
Q Consensus 184 ~~~l~~~~~LlvlDdv~~~~~-------------l~~l~~~~~~~~~g~~iliTtR~~~~---~~~~~~~~~~~l~~L~~ 247 (373)
. ...++++||+|++++... +..+... ...+++++++|+|.... .........+.+.+|+.
T Consensus 77 ~--~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 77 L--EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred H--HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 1 257899999999864322 3333333 12358999999998765 22333445899999999
Q ss_pred hHHHHHHHHhh
Q 017364 248 DEALGLFCLKA 258 (373)
Q Consensus 248 ~ea~~l~~~~~ 258 (373)
++..+++++..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 14
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.34 E-value=7.1e-11 Score=113.59 Aligned_cols=267 Identities=16% Similarity=0.114 Sum_probs=163.8
Q ss_pred ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..+.+.|-|...++.+.. + .+.+.+.|..|+|.|||||+.+++. .......+.|+.-. ....+...+.+.+
T Consensus 16 ~~~~~~v~R~rL~~~L~~----~-~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~yL 86 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR----A-NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLSYL 86 (894)
T ss_pred CCcccccccHHHHHHHhc----C-CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHHHH
Confidence 345678888776666553 2 2459999999999999999999998 55556788888632 1234455566666
Q ss_pred HHHHhCCCCCCC------------cchhhhHHHHHHhh--CCCceEEEeccccc------HHHHHHHhcCCCCCCCCcEE
Q 017364 162 ISQLLNLPDSGV------------WNVYDGMNMIRSRL--RHKKVLLVIDDVIE------LQQLESLAGKHDWFGIGSRI 221 (373)
Q Consensus 162 ~~~~~~~~~~~~------------~~~~~~~~~l~~~l--~~~~~LlvlDdv~~------~~~l~~l~~~~~~~~~g~~i 221 (373)
+..+....+... .+.......+..-+ -.++..+||||.+- ...++.++.+.| ++..+
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~l 163 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTL 163 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeEE
Confidence 555432222111 12222333333323 35689999999852 234666766655 58889
Q ss_pred EEEeCChhhHhhcC---CCceEeCC----CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364 222 FITSRDKHLLMAHG---VDEVYMHE----HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294 (373)
Q Consensus 222 liTtR~~~~~~~~~---~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 294 (373)
++|||+..-+.... .+..++++ .|+.+|+.+||....... ......+.+++.++|-+-|+..++-.++
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99999885322110 11223332 489999999998766221 2344588999999999999999998887
Q ss_pred C-CCHHHHHHHHHHhcCCCCchH-HHHHHhchhCCchhhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccC
Q 017364 295 G-RTIAEWESALQRLERDPENEI-LDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENL 372 (373)
Q Consensus 295 ~-~~~~~~~~~l~~l~~~~~~~i-~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~ 372 (373)
+ .+.+.-..-++ .. ..-+ .-....-++.||++.|.++..+|+++. +.-+....+.+.+ +....|+.|.++.
T Consensus 239 ~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~~g 311 (894)
T COG2909 239 NNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELERRG 311 (894)
T ss_pred CCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHhCC
Confidence 4 33332211111 11 1112 224455689999999999999999853 3333344443322 2334455555544
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.24 E-value=6.6e-10 Score=98.57 Aligned_cols=239 Identities=21% Similarity=0.265 Sum_probs=137.9
Q ss_pred cCcccchhhH---HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELVGLDSRL---EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~vGR~~~~---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..+||.+..+ .-|..++..+ .+....+|||+|+||||||+.+++.....|...--+ ..+. .-.+.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gv-kdlr~i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGV-KDLREI 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccH-HHHHHH
Confidence 4566655443 3444555544 456788999999999999999999766554322111 1111 111222
Q ss_pred HHHHhCCCCCCCcchhhhHHHH-HHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHhh---
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMI-RSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFI--TSRDKHLLMA--- 233 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~ili--TtR~~~~~~~--- 233 (373)
++.- .....+++.+|++|.|+ +..+-+.|++... .|.-++| ||-|+.+...
T Consensus 93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH
Confidence 2222 22235789999999996 4556677777664 4665665 6666654211
Q ss_pred cCCCceEeCCCCCHhHHHHHHHHhhcCCC-----CCCchHHHHHHHHHHHhCCCchHHHHHHHHh---c-CC---CHHHH
Q 017364 234 HGVDEVYMHEHLNYDEALGLFCLKAFKSH-----KPWKGYEQLSKSVVKYAGGLPLALKVLGSFL---F-GR---TIAEW 301 (373)
Q Consensus 234 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l---~-~~---~~~~~ 301 (373)
..-..++.+++|+.++-..++.+.+.... ......++..+.++..++|-....-.+.... . .. ..+..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l 231 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELL 231 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 12346899999999999999988442211 1111335577888999988766543333322 2 22 23444
Q ss_pred HHHHHHhcC------CCCchHHHHHHhchhCCchhhHHHHhhhcccCCCCCHHHHHHHHHh
Q 017364 302 ESALQRLER------DPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNY 356 (373)
Q Consensus 302 ~~~l~~l~~------~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~ 356 (373)
.+.+.+-.. ..+-++..+|..|.+.=++++ .+..++-++..|.+...+.+.+..
T Consensus 232 ~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA-ALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 232 EEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA-ALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred HHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH-HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 444443111 122456677777777655554 334444456666766655555433
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.22 E-value=5.6e-10 Score=104.41 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=106.4
Q ss_pred ccCcccchhhHHH---HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 84 LKELVGLDSRLEK---LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 84 ~~~~vGR~~~~~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
...+||++..+.. +..++..+ ..+.+.|+|++|+||||||+.+++.....|.. +. .. .... ...+.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-a~----~~~~-~~ir~ 79 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-AV----TSGV-KDLRE 79 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-cc----cccH-HHHHH
Confidence 3569999887666 77777654 34678899999999999999999876543311 11 00 0111 11111
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEE--EeCChhhH--hh
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFI--TSRDKHLL--MA 233 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~ili--TtR~~~~~--~~ 233 (373)
++.. .... ..+++.+|++|+++.. ...+.+...+. .+..+++ ||.+.... ..
T Consensus 80 ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 VIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 1111 1111 1456789999999753 34445554443 2444444 34443211 11
Q ss_pred -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKP-WKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
......+.+.+++.++...++.+.+...... .....+..+.+++.|+|.+..+..+...+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1123678999999999999998765321111 12335678889999999998776555443
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=99.17 E-value=1.4e-09 Score=93.38 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=93.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+.+.|+|++|+|||+|+..+++........+.|+... .. ...... +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~----------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPA----------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHH----------------------HHhhc
Confidence 36789999999999999999999876555555665411 00 000001 11111
Q ss_pred CCCceEEEecccccH---HHH----HHHhcCCCCCCCCcEEEE-EeCC---------hhhHhhcCCCceEeCCCCCHhHH
Q 017364 188 RHKKVLLVIDDVIEL---QQL----ESLAGKHDWFGIGSRIFI-TSRD---------KHLLMAHGVDEVYMHEHLNYDEA 250 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~---~~l----~~l~~~~~~~~~g~~ili-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea 250 (373)
. +.-+|+|||++.. ..+ -.+..... ..|..+|+ |++. +.+...+.....+++++++.++.
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~--~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK--EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHH--HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 1 2358999999753 122 22222221 22445544 4443 23444455566889999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
++++++.+...... ..+++.+-|++.+.|..-.+..+-..+
T Consensus 167 ~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 167 IIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999888543322 335678888888888877776665544
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=103.89 Aligned_cols=250 Identities=20% Similarity=0.249 Sum_probs=163.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
+.+.++|++||||||++-.+.. +...|....|+.+...+.+......... ..++.+. .+.+..+..+.....
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~a----g~~gl~~---~~g~~~~~~~~~~~~ 86 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLA----GALGLHV---QPGDSAVDTLVRRIG 86 (414)
T ss_pred heeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHH----hhccccc---ccchHHHHHHHHHHh
Confidence 8899999999999999999999 8888988888877655544332222221 1112111 111223444566667
Q ss_pred CCceEEEecccccHHH-----HHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCCCCHh-HHHHHHHHhhcCCC
Q 017364 189 HKKVLLVIDDVIELQQ-----LESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYD-EALGLFCLKAFKSH 262 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~~-----l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~l~~~~~~~~~ 262 (373)
.++.++++||...... +..+.... +...++.|+|+.-. ......+.+++|+.. ++.++|...+....
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~----~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGAC----PRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccc----hhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 8899999999865432 33344333 25568889987633 224557788888876 78888866652211
Q ss_pred ---CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH----hcCC------CCchHHHHHHhchhCCch
Q 017364 263 ---KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR----LERD------PENEILDVLQISFDGLKE 329 (373)
Q Consensus 263 ---~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~ 329 (373)
...........+|++...|.|++|..+++..+.....+...-+.. +... ........+..||.-|+.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 112233566889999999999999999999887665544443332 2222 224467788999999999
Q ss_pred hhHHHHhhhcccCCCCCHHHHHHHHHhCC-----CCcccchhhhhccCC
Q 017364 330 TEKKIFLDIACFYKGKYIDYVTKILNYCD-----FDPIIGIGGLIENLY 373 (373)
Q Consensus 330 ~~~~~l~~la~f~~~~~~~~l~~l~~~~~-----~~~~~~l~~L~~~~L 373 (373)
-++-.|..++.|..+|+.+.....-.... +..-..+-.|++||+
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~ksl 288 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSL 288 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccc
Confidence 99999999999999998763333222211 222345555666654
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.10 E-value=5.8e-09 Score=101.63 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=99.2
Q ss_pred cccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----c-ceEEEeechhhhcccC
Q 017364 83 TLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----E-ASCFLANVREISKKSG 153 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~ 153 (373)
.|+.++||++|++.|...|.+ ++....++.|+|++|+|||+.++.++..+.... + ..+...++.. ...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~---Lst 829 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN---VVH 829 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc---cCC
Confidence 457899999999999988874 222235678999999999999999998764321 1 2222223322 233
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC---CCceEEEecccccHH-----HHHHHhcCCCCCCCCcEEE--E
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR---HKKVLLVIDDVIELQ-----QLESLAGKHDWFGIGSRIF--I 223 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~-----~l~~l~~~~~~~~~g~~il--i 223 (373)
.......+..++.+..+.........+..+...+. ....+||||+++... .+-.+..... ..+++|+ .
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIG 907 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEE
Confidence 44455555556544443333333344444444432 234689999997432 2322222211 1234433 3
Q ss_pred EeCChhhH--------hhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364 224 TSRDKHLL--------MAHGVDEVYMHEHLNYDEALGLFCLKAF 259 (373)
Q Consensus 224 TtR~~~~~--------~~~~~~~~~~l~~L~~~ea~~l~~~~~~ 259 (373)
+|.+..+. ..+ ....+..+|++.++..+++..++.
T Consensus 908 ISNdlDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred ecCchhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHH
Confidence 44332211 112 123467799999999999988874
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.09 E-value=1.5e-08 Score=92.81 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=107.4
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cc-eEEEeechhhhcccCHHHHHHH-H
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EA-SCFLANVREISKKSGLVFLQKQ-L 161 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~~~~-~ 161 (373)
..++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++.+.... .. .+.+ ++...... ....+... .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i-~~~~~~~~-~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF-NVADFFDQ-GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe-chhhhhhc-chhhhhcCcc
Confidence 568999999999999887652 35688999999999999999998865332 11 1222 22111000 00000000 0
Q ss_pred HHHHhCCC-CCCCcchhhhHHHHHHh---h--CCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364 162 ISQLLNLP-DSGVWNVYDGMNMIRSR---L--RHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LLM 232 (373)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~~ 232 (373)
.....+.. .............+... . ...+-+||+||++... ....+...+......+++|+|+.+.. ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 00000111111111111 1 1334589999986432 22222222211233566777775542 222
Q ss_pred hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
.+ .....+.+.+++.++...++...+...... ...+....+++.++|++-.+.....
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 123578889999999999998765332222 3356788999999998777655443
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.2e-08 Score=96.93 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=111.4
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-.++||.+..++.|...+..+. -.+.+.++|+.|+||||+++.+++.+....... ...+ +.......+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~PC-------G~C~sCr~I~ 83 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQPC-------GVCRACREID 83 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CCCC-------cccHHHHHHh
Confidence 34579999999999999988652 246678999999999999999998764321000 0000 0000000000
Q ss_pred H----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364 163 S----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKHLLM 232 (373)
Q Consensus 163 ~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~~~~ 232 (373)
. .+..........+++....+... ..++.-++|||+++... .+..++..+.....+.++|++|++..-..
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 0 00000000001111111111111 12345688999997543 35555554433344778888887764321
Q ss_pred -h-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHHH
Q 017364 233 -A-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVLG 290 (373)
Q Consensus 233 -~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 290 (373)
. ..-...+.+.+++.++..+.+...+..... ....+....|++.++|... +|.++-
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 122357899999999999999877643222 2335668889999988664 555533
No 22
>PTZ00202 tuzin; Provisional
Probab=99.06 E-value=2.1e-07 Score=84.60 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=96.6
Q ss_pred ccccccCcccchhhHHHHHHHHhcCCC-CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHH
Q 017364 80 KSETLKELVGLDSRLEKLRFLINKGPT-DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 80 ~~~~~~~~vGR~~~~~~l~~~l~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
.|..+..|+||+.++..+...|...+. .+++++|+|++|+|||||++.+..... ...++.+. .+...++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHHH
Confidence 346678999999999999999974332 357999999999999999999997554 23444332 2557777
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh-----C-CCceEEEec--ccccHHH-H---HHHhcCCCCCCCCcEEEEEeC
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-----R-HKKVLLVID--DVIELQQ-L---ESLAGKHDWFGIGSRIFITSR 226 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlvlD--dv~~~~~-l---~~l~~~~~~~~~g~~iliTtR 226 (373)
..++..+.-.+.. ...++...+.+.+ . +++.+||+- +=.+..- . -.+... ..-|.|++---
T Consensus 327 r~LL~ALGV~p~~---~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evp 399 (550)
T PTZ00202 327 RSVVKALGVPNVE---ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVP 399 (550)
T ss_pred HHHHHHcCCCCcc---cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeeh
Confidence 8888776532221 2223333333332 2 566666664 2222111 1 111111 12455665443
Q ss_pred ChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 227 DKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 227 ~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
-+.+-. .+.--..|-+++++.++|.++.....
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 332211 11223468899999999999876544
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=8.1e-08 Score=88.34 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=109.3
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+........ ...........+..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKEIEK 84 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHHHhc
Confidence 3578999999999999887652 2467899999999999999999987642211000 00000000000000
Q ss_pred H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
. +...........+. ...+.+.+ .+++-++|+|+++... .++.++..+........+|++|.+.. +.
T Consensus 85 ~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 0 00000000001111 11111111 2345699999997543 35555555544345666777776543 22
Q ss_pred hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
... +....+++.+++.++..+.+...+..... ...++.+..|++.++|.|..+..+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 12357899999999999988776533221 1234567889999999887544333
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.02 E-value=1.4e-08 Score=87.42 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=102.4
Q ss_pred cCccc--chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 85 KELVG--LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 85 ~~~vG--R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
++|++ ....++.+..++... ..+.+.|+|++|+|||+||+.+++.........+++ ++...... ...++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i-~~~~~~~~------~~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL-PLAELAQA------DPEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE-eHHHHHHh------HHHHH
Confidence 34553 334577777765432 247899999999999999999998765444344444 22222110 00111
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh------
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH------ 229 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~------ 229 (373)
..+.+ .-+|+|||++... .+..+..... ..+..+|+||+...
T Consensus 86 ----------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~--~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 86 ----------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVR--EAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred ----------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHH--HcCCeEEEECCCChHHCCcc
Confidence 11122 3489999996432 1222222111 12346888887532
Q ss_pred ---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 230 ---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 230 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
+.........+.+++++.++...++...+..... ....+..+.+.+.+.|+|..+..+...+
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1222222457899999999999998765432221 1334667888888999998888776544
No 25
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.02 E-value=5.4e-08 Score=88.32 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=105.0
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ 164 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
..++|++..++.+..++..+. .+.+.|+|++|+||||+++.+++.+........++. .. .+...... .....+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHHHHHH
Confidence 568999999999999987643 245799999999999999999988643321111111 00 01111111 11111111
Q ss_pred HhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-cCCCceE
Q 017364 165 LLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMA-HGVDEVY 240 (373)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~-~~~~~~~ 240 (373)
+....+ .....+-++++|+++.. .....+...+......+.+|+++.... .... ......+
T Consensus 92 ~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 92 FARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 110000 00123568999998643 223333333322234566777665432 1111 1123468
Q ss_pred eCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 241 MHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 241 ~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.+.+++.++...++...+...... ..++.+..+++.++|.+.-+....
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999988776432221 335678899999999987754443
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1e-07 Score=90.69 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=111.5
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeec-hhhhc--ccCHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANV-REISK--KSGLVFLQ 158 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~-~~~~~--~~~~~~~~ 158 (373)
-..++|-+...+.|...+..+. -...+.++|++|+||||+|+.++..+... ++..++.+.. ..... ..++..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e-- 89 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE-- 89 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE--
Confidence 3568999999999988888652 24567999999999999999999886432 2223332210 00000 000000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHH-hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH 234 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~ 234 (373)
+..........+.++...+.. -+.+++-++|+|+++.. ..+..++..+......+.+|+++... .+....
T Consensus 90 ------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 90 ------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred ------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000000000111111111111 12345668999998743 44666665554334455666666543 222211
Q ss_pred -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.....+.+.+++.++...++...+...... ...+.+..|++.++|.+.-+...
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~aln~ 217 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAESL 217 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234579999999999999998876432222 23567889999999999766433
No 27
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.3e-07 Score=86.33 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=112.0
Q ss_pred cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cceEE-E--eechhhhcccCHH
Q 017364 81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EASCF-L--ANVREISKKSGLV 155 (373)
Q Consensus 81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~-~--~~~~~~~~~~~~~ 155 (373)
|.....++|.+...+.+.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+- ..... . ... ......
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c--- 89 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDH--- 89 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCC---
Confidence 3445679999999999999988652 245689999999999999999999764221 10000 0 000 000000
Q ss_pred HHHHHHHHHH------hC----CCC---CCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCC
Q 017364 156 FLQKQLISQL------LN----LPD---SGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWF 215 (373)
Q Consensus 156 ~~~~~~~~~~------~~----~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~ 215 (373)
...+.+.... +. ... ...-.+++ +..+.+.+ .+++-++|+|+++. ......++..+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0001110000 00 000 00011222 22233333 34567999999863 44445555444333
Q ss_pred CCCcEEEEEeCChhhH-hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 216 GIGSRIFITSRDKHLL-MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~-~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
..++.+|++|++.... .. ......+.+.+++.++..+++...... . . .+....++..++|+|+....+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~--~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L--P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C--C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 3466677777776432 22 223468999999999999999876421 1 1 1223678999999998665543
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1e-07 Score=91.38 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=111.2
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+..... ... ...+.....+.+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-----~pCg~C~sC~~I~ 82 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-----TPCEVCATCKAVN 82 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-----CCCccCHHHHHHh
Confidence 34579999999999999998652 2467899999999999999999987643211 000 0000000000000
Q ss_pred HH----HhCCCCCCCcchhhhHHHHHH----hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-
Q 017364 163 SQ----LLNLPDSGVWNVYDGMNMIRS----RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL- 231 (373)
Q Consensus 163 ~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~- 231 (373)
.. +...........+.....+.. -..++.-++|+|+++.. .....++..+.....+..+|++|.+..-.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 00 000000000111111111111 11345668999999743 34555554443333466788877764321
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.. ......+++.+++.++....+...+..... ....+....|++.++|.+..+..+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 123467899999999999998877643222 233566888999999988555433
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1e-07 Score=94.20 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=112.5
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEee-chhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLAN-VREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~-~~~~~~~~~~~~~~ 158 (373)
.-..+||.+..++.|.+.+..+. =...+.++|+.|+||||+|+.+++.+..... ..|..+. +..+...... .
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~-D-- 89 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV-D-- 89 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc-e--
Confidence 34579999999999999887542 2355689999999999999999998653211 0010000 0000000000 0
Q ss_pred HHHHHHHhCCC-CCCCcchhhhHHHHHH-hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh
Q 017364 159 KQLISQLLNLP-DSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMA 233 (373)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~ 233 (373)
+.. +... ......++.+...+.. -..++.-++|||+++. ......|+..+.......++|++|.+.. +...
T Consensus 90 ---viE-idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 90 ---LIE-VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred ---EEE-eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 000 0000 0001111222222211 1245667999999964 4456666655543344666776665543 3222
Q ss_pred c-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 234 H-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 234 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
+ .....+.+.+|+.++...++...+.... .....+.+..|++.++|.|.-+..+.
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1236899999999999999887663322 12345678889999999887554443
No 30
>PLN03194 putative disease resistance protein; Provisional
Probab=98.99 E-value=3.5e-10 Score=90.42 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=52.8
Q ss_pred CEEeeeecccccccccc-cchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCC--CCChhHHHhhhhhcccccc
Q 017364 1 MIFPIFYDLEPTTVRKQ-TASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELK--DRNEPEFIVDIVKEISCKI 77 (373)
Q Consensus 1 ~v~p~~~~v~~~~v~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~ 77 (373)
+|+||||+|+|+|||+| .|.+ ..+++++|++||+++++++|+... ..++.++++.|+..|...+
T Consensus 111 ~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 111 RVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNL 177 (187)
T ss_pred EEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999997 4432 235799999999999999998654 4679999999988776654
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.99 E-value=5.8e-08 Score=87.81 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=104.7
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
.-..++|.++.++.+..++..+. .+.+.++|++|+||||+|..+++.+.. .+...+.-.+. +...+.. ..+..
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~~~-~vr~~ 84 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRGID-VVRNK 84 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccccHH-HHHHH
Confidence 33568999988888888877543 355789999999999999999988632 22221111111 1111111 11222
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCC
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVD 237 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~ 237 (373)
+..+...... ...++.-++++|+++... .-..+..........+++++++.... +...+ ...
T Consensus 85 i~~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 1111000000 002345689999997432 22223222222234566777665432 11111 122
Q ss_pred ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
..+++.+++.++....+...+...... ...+....|++.++|....+....
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 478999999999999988776432222 224568889999999875554433
No 32
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.98 E-value=3.6e-09 Score=87.93 Aligned_cols=50 Identities=30% Similarity=0.515 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHHh-cCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 86 ELVGLDSRLEKLRFLIN-KGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.|+||+.+++.+...+. ......+.+.|+|++|+|||+|++.++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 223346899999999999999999999988776
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=98.97 E-value=4.2e-08 Score=93.69 Aligned_cols=212 Identities=17% Similarity=0.175 Sum_probs=120.0
Q ss_pred ccCcccchhhHHHHHHHHhcCC--CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGP--TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
...++|.+..++.+..++.... ...+.+.|+|++|+||||+|+.+++.+. +....+ +. +.... ......+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~iel--na---sd~r~-~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIEL--NA---SDQRT-ADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEE--cc---ccccc-HHHHHHH
Confidence 4569999999999998887422 1157899999999999999999999763 222222 11 11111 1122222
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH------HHHHHhcCCCCCCCCcEEEEEeCChhhH-h-h
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ------QLESLAGKHDWFGIGSRIFITSRDKHLL-M-A 233 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~l~~l~~~~~~~~~g~~iliTtR~~~~~-~-~ 233 (373)
........ ..+..++-+||||+++... .+..+...+. ..+..+|+++.+..-. . .
T Consensus 85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 22211110 0011356799999997532 2334433322 1233466666543211 1 1
Q ss_pred -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-C---CHHHHHHHHHHh
Q 017364 234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-R---TIAEWESALQRL 308 (373)
Q Consensus 234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~---~~~~~~~~l~~l 308 (373)
-.....+.+.+++..+....+...+...... ...+....|++.++|....+......+.. . +....... .
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~---~ 222 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL---G 222 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---h
Confidence 1234578999999999999888776432222 23567899999999987766554444432 2 12222222 1
Q ss_pred cCCCCchHHHHHHhchh
Q 017364 309 ERDPENEILDVLQISFD 325 (373)
Q Consensus 309 ~~~~~~~i~~~l~~s~~ 325 (373)
......+++.++...+.
T Consensus 223 ~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 223 RRDREESIFDALDAVFK 239 (482)
T ss_pred cCCCCCCHHHHHHHHHC
Confidence 13344556666665554
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.1e-07 Score=91.05 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=112.0
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
.-..+||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... .-.. ....+.......+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~I 87 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTEI 87 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHHH
Confidence 34579999999999999998652 235678999999999999999999765321000 0000 0000000000000
Q ss_pred HH----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-h
Q 017364 162 IS----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-L 230 (373)
Q Consensus 162 ~~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~ 230 (373)
.. .++.........+++..+.+... ..++.-++|||+++. ....+.|+..+.....++.+|++|.+.. +
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 00000000011122222222111 134566999999974 3456667666654445667776666543 3
Q ss_pred Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
...+ .-...+.+.+++.++..+.+.+.+...... ...+....|++.++|.|.-...+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 123578999999999999888765332211 22455788999999999654443
No 35
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.94 E-value=1.5e-07 Score=80.04 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=99.7
Q ss_pred cCcccchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHH
Q 017364 85 KELVGLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 85 ~~~vGR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
..++|-..+ ...+.............+.|+|+.|+|||.|+..+++.+....+ .++++. .. .+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~~---------~f~~~ 78 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-AE---------EFIRE 78 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-HH---------HHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-HH---------HHHHH
Confidence 344575443 33333333332223456889999999999999999998765433 233332 21 22222
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh----
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH---- 229 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~---- 229 (373)
+...+.. .....++..+.+ -=+|++||++... .+-.+...+. ..|.++|+|++...
T Consensus 79 ~~~~~~~----------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 79 FADALRD----------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHT----------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTT
T ss_pred HHHHHHc----------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCcccc
Confidence 2222211 112334444443 3478899996421 1222222221 23667999996542
Q ss_pred -----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 230 -----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 230 -----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
+...+...-.+++.+++.++..+++.+.+...... -.+++++-|++.+.+..-.|..+...+
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 23334456689999999999999998887443322 345677788888777776666554443
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.9e-07 Score=86.87 Aligned_cols=197 Identities=16% Similarity=0.103 Sum_probs=106.7
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||.+...+.+...+..+. -++.+.++||+|+||||+|+.++..+...-.. .+..+ ........+.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~--~~~pc-------~~c~~c~~i~ 81 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRK--GVEPC-------NECRACRSID 81 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC--CCCCC-------cccHHHHHHh
Confidence 34579999988888888887552 23568899999999999999999876432100 00000 0000000000
Q ss_pred HH----HhCCCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364 163 SQ----LLNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HL 230 (373)
Q Consensus 163 ~~----~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~ 230 (373)
.. ............+.. ..+.+. +.+++-++|+|+++.. .....++..+........+|++|.+. .+
T Consensus 82 ~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred cCCCCccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 00 000000000011111 111111 2345679999999754 33455555544333345555555443 22
Q ss_pred Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH
Q 017364 231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF 292 (373)
Q Consensus 231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 292 (373)
.... .....+.+.+++.++....+...+..... ...++....|++.++|. +.++..+-..
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2221 23457899999999999998877633221 13356678899888655 5666666543
No 37
>PRK08727 hypothetical protein; Validated
Probab=98.94 E-value=5.1e-08 Score=83.89 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=97.3
Q ss_pred cCcccchh-hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 85 KELVGLDS-RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 85 ~~~vGR~~-~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
++|++... .+..+....... ....+.|+|++|+|||+|+..+++........+.|+. ... ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH-
Confidence 34555443 344443333221 2256999999999999999999998766554555553 111 000000
Q ss_pred HHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh-------
Q 017364 164 QLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH------- 229 (373)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~------- 229 (373)
..+. .+ .+.-+||+||++... .+-.+..... ..+..+|+|++...
T Consensus 86 -----------------~~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~--~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 86 -----------------DALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRAR--AAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred -----------------HHHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHH--HcCCeEEEECCCChhhhhhhh
Confidence 0011 11 223589999986321 1222222211 23556999998542
Q ss_pred --hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 230 --LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 230 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
+...+.....+.+++++.++-.+++.+++..... ....+...-|++.++|-.-.+..+-
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2223334568899999999999999986643222 2335667788888876665553333
No 38
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.9e-07 Score=85.17 Aligned_cols=253 Identities=17% Similarity=0.133 Sum_probs=144.9
Q ss_pred ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~ 158 (373)
..|..+.+|+.+++++...|.+- ...+..+.|+|++|+|||+.++.+++++....... +.+.++ ........+.
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc---~~~~t~~~i~ 90 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC---LELRTPYQVL 90 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee---eeCCCHHHHH
Confidence 34456999999999999888742 12234599999999999999999999987664433 333333 3345666777
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----HHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----QLESLAGKHDWFGIGSRIFITSRDKHLL 231 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~l~~l~~~~~~~~~g~~iliTtR~~~~~ 231 (373)
..++..+... +....+..+....+.+.+ .++.+++|||+++... .+-.+............+|..+.+..+.
T Consensus 91 ~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 91 SKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 7777776532 333344555566666665 4578999999986432 3334433332221222344455554332
Q ss_pred h--------hcCCCceEeCCCCCHhHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH--hcC--
Q 017364 232 M--------AHGVDEVYMHEHLNYDEALGLFCLKA---FKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF--LFG-- 295 (373)
Q Consensus 232 ~--------~~~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~--l~~-- 295 (373)
. .++ ...+..+|-+.+|-.+.+..++ +......+..-+.+-.++..-+|- -.||..+-.. +..
T Consensus 170 ~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 170 DYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 2 222 2347889999999999998776 333333334444455555555542 2333333211 111
Q ss_pred -C---CHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccCCCCC
Q 017364 296 -R---TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKY 346 (373)
Q Consensus 296 -~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~ 346 (373)
. +.+.-..+... --...+...++.||.+++-.+..++....+++
T Consensus 249 ~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~ 296 (366)
T COG1474 249 GSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEIS 296 (366)
T ss_pred CCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Confidence 0 11111111111 11224444578888888877766665533333
No 39
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.4e-07 Score=85.66 Aligned_cols=197 Identities=13% Similarity=0.059 Sum_probs=112.6
Q ss_pred cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc----cceEEEeechhhhcccCHHH
Q 017364 81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF----EASCFLANVREISKKSGLVF 156 (373)
Q Consensus 81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~ 156 (373)
|.....++|-+...+.+...+..+. .+..+.|+|+.|+||||+|..++..+-..- ...... .......
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCH
Confidence 4455679999999999999998662 345799999999999999999999865421 111000 0000001
Q ss_pred HHHHHHHH-------HhC---CCC---CCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCC
Q 017364 157 LQKQLISQ-------LLN---LPD---SGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFG 216 (373)
Q Consensus 157 ~~~~~~~~-------~~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~ 216 (373)
....+... +.. ... ...-.+++ +..+.+.+ .++.-++|+|+++. ....+.++..+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 11111100 000 000 01111222 22333333 34567899999974 333444444443323
Q ss_pred CCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 217 IGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 217 ~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.++.+|++|.+.. +.... .....+.+.+++.++..+++........ ...+....+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555555442 22221 1235899999999999999987432111 224457889999999998665544
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.90 E-value=1.7e-08 Score=78.79 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=71.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc-----ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE-----FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNM 182 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (373)
.+.+.|+|++|+|||++++.++..+... ....+|+. .........+...++..+...... ..+.......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 3789999999999999999999987543 23444554 233336777777877776544333 3455666677
Q ss_pred HHHhhCCCc-eEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 017364 183 IRSRLRHKK-VLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRD 227 (373)
Q Consensus 183 l~~~l~~~~-~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~ 227 (373)
+.+.+...+ .+||+|+++.. ..++.+..... ..+..+|++.+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777775544 59999999765 23444433323 456778887775
No 41
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=8.5e-09 Score=80.10 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=73.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
++++|.|+.|+|||||++++++... ....++++. ...... ..... .+ ....+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~----~~~~~----------------~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD----RRLAD----------------PD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH----HHHhh----------------hh-hHHHHHHhhc
Confidence 6899999999999999999998766 223344442 211110 00000 00 1122333333
Q ss_pred CCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc------CCCceEeCCCCCHhHH
Q 017364 189 HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH------GVDEVYMHEHLNYDEA 250 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~------~~~~~~~l~~L~~~ea 250 (373)
+++.+++||++.....|...+..+-...++.+|++|+.+....... +....+.+.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4678899999987777666655554334567899999987655321 1224678999998874
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.89 E-value=3.9e-08 Score=78.15 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=69.7
Q ss_pred ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhC
Q 017364 88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLN 167 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (373)
+|++.++..+...+.... .+.+.|+|++|+|||+|++.+++.+......++++. ......... ... .... .
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~---~~~-~~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLV---VAE-LFGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhH---HHH-Hhhh-h-
Confidence 478888888888887532 278999999999999999999998754333344432 221111100 000 0000 0
Q ss_pred CCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-----HHHHHHhcCCCCC---CCCcEEEEEeCChh
Q 017364 168 LPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-----QQLESLAGKHDWF---GIGSRIFITSRDKH 229 (373)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----~~l~~l~~~~~~~---~~g~~iliTtR~~~ 229 (373)
............++.++++||++.. ..+...+...... ..+..+|+|+....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999743 2233333333221 34677888888653
No 43
>PF14516 AAA_35: AAA-like domain
Probab=98.89 E-value=8e-07 Score=80.60 Aligned_cols=204 Identities=13% Similarity=0.143 Sum_probs=116.9
Q ss_pred ccccCcccchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc--ccCHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK--KSGLVFLQ 158 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~ 158 (373)
...+.+|.|...-+.+...+.. | ..+.|.|+..+|||||+..+.+........++++ ++..... ......+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G----~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG----SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC----CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHH
Confidence 4456789999666666666654 6 7899999999999999999999887553344444 3332222 23344444
Q ss_pred HHHHHHHh---CCCCC-------CCcchhhhHHHHHHhh---CCCceEEEecccccHHH----HHHHhcCC-------CC
Q 017364 159 KQLISQLL---NLPDS-------GVWNVYDGMNMIRSRL---RHKKVLLVIDDVIELQQ----LESLAGKH-------DW 214 (373)
Q Consensus 159 ~~~~~~~~---~~~~~-------~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~----l~~l~~~~-------~~ 214 (373)
..++..+. +.... ...+.......+.+.+ .+++.+|+||+++..-. ..++...+ ..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 44433332 21110 0111122223333332 36899999999874321 11222111 10
Q ss_pred C-CCC-cEEE-EEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 215 F-GIG-SRIF-ITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 215 ~-~~g-~~il-iTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
. ... -+++ +.+........ ......+.|++++.+|...|+...... . .....++|...+||+|..+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~---~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F---SQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C---CHHHHHHHHHHHCCCHHHH
Confidence 0 011 1222 22211111111 123357889999999999998876422 1 1233899999999999999
Q ss_pred HHHHHHhcCC
Q 017364 287 KVLGSFLFGR 296 (373)
Q Consensus 287 ~~~~~~l~~~ 296 (373)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999653
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.89 E-value=7.1e-07 Score=82.31 Aligned_cols=196 Identities=13% Similarity=0.145 Sum_probs=108.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhc--ccCHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISK--KSGLVF 156 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~--~~~~~~ 156 (373)
-..++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+..... +..... +..+.. ..++..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~-c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES-CKEINSGSSLDVIE 90 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHhcCCCCCEEE
Confidence 3568999999999999887552 2467889999999999999999987642210 000000 000000 000000
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM 232 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~ 232 (373)
+ .+........+..+...+... +.+++-++|+|+++.. .....+...+......+.+|++|.+.. +..
T Consensus 91 ~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~ 162 (355)
T TIGR02397 91 I--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPA 162 (355)
T ss_pred e--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHH
Confidence 0 000000000111111111111 1344558899998643 344555544433334566667765553 222
Q ss_pred hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
.. .....+++.+++.++..+++...+-..... ..++.+..+++.++|.|..+.....
T Consensus 163 ~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 163 TILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred HHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 21 123578899999999999988766332221 2346788899999999976655543
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=5.3e-07 Score=87.26 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=110.2
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEeechhhhcccCHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
.-..+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+...-. ...-.. ..+......
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~-------pCg~C~~C~ 85 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT-------PCGVCQACR 85 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC-------CCCccHHHH
Confidence 34579998888999999988652 2466799999999999999999987642110 000000 000000000
Q ss_pred HHHHH----HhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-
Q 017364 160 QLISQ----LLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK- 228 (373)
Q Consensus 160 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~- 228 (373)
.+... +..........+++..+.+... ..++.-++|||+++. ......++..+......+.+|++|.+.
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 11000 0000000001122221111111 123455899999974 445566666554434466676666543
Q ss_pred hhHhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 229 HLLMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 229 ~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.+... ......+.+.+++.++....+...+...... ...+....|++.++|.+.-+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 32222 2234679999999999999988766432222 23456788999999988655444
No 46
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.7e-07 Score=86.41 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=103.3
Q ss_pred cCcccchhhHHHHHHHHhcCCC--------CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPT--------DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF 156 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 156 (373)
..++|-+..++.+...+..+.. -++.+.++||+|+|||++|+.++..+-..... . ..+.. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~~Cg~-------C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-PGCGE-------CR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-CCCCC-------CH
Confidence 4588989889999999886531 24678999999999999999999875432210 0 00000 00
Q ss_pred HHHHHHHHH-----hCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEE
Q 017364 157 LQKQLISQL-----LNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFIT 224 (373)
Q Consensus 157 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliT 224 (373)
....+.... .-.+......+++. ..+.+.+ .+++-++|+|+++.. .....++..+....+++.+|++
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 000000000 00000000111111 1122211 244558888999743 3334444444333446667776
Q ss_pred eCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364 225 SRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287 (373)
Q Consensus 225 tR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 287 (373)
|.+.. +...+ .....+.+.+++.++..+.+..... ...+.+..++..++|.|....
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 66653 33222 2246889999999999988874431 113457788999999997443
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=98.87 E-value=1.5e-07 Score=81.06 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=91.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
+.+.|+|++|+|||+|+..+++.+......++|+. ...+. .. ...+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~---------~~-------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELL---------DR-------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHH---------hh-------------------hHHHHHhhh
Confidence 56899999999999999999987765544555553 11110 00 011222222
Q ss_pred CCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCChhh---------HhhcCCCceEeCCCCCHhHHHH
Q 017364 189 HKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDKHL---------LMAHGVDEVYMHEHLNYDEALG 252 (373)
Q Consensus 189 ~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~ 252 (373)
+- -+|++||+... +.+-.+..... ..|..+|+|++.... ...+.....+.+.+++.++-..
T Consensus 97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hC-CEEEEechhhhcCChHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 22 26889999522 12333333222 236678888875421 2223344678899999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 253 LFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
.+..++..... ...+++.+-|++.+.|..-.+..+-..|
T Consensus 174 il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 174 ALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99855533221 1235677888888888776666665554
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=2.8e-07 Score=85.82 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=110.6
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEee-chhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLAN-VREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~-~~~~~~~~~~~~~~ 158 (373)
.-..+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+....+. .+..+. +..+......
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~---- 90 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISS---- 90 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCc----
Confidence 34579999999999999888653 23568999999999999999999976532110 000000 0000000000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH 234 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~ 234 (373)
.++ .+-........++.++...+... ..++.-++|+|+++. ...+..++..+........+|++|.+. .+...+
T Consensus 91 -dvi-EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 91 -DVL-EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred -cce-eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 000 00000000011122222222211 235567999999974 445666665554333455555555543 332222
Q ss_pred -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.....|.+.+++.++..+.+...+..... ....+....|++.++|.+.-.-.+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHHHHHH
Confidence 12356899999999999988877633221 234567889999999998544333
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=6.1e-07 Score=84.47 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=108.9
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+... ...+.......+.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~pCg~C~~C~~i~ 80 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DPCGTCHNCISIK 80 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CCccccHHHHHHh
Confidence 34579999999999988887652 2357899999999999999999986532211100 0000000000000
Q ss_pred HHH----hCCCCCCCcchhh---hHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 163 SQL----LNLPDSGVWNVYD---GMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 163 ~~~----~~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
... ...........++ .+...... +.++.-++|+|+++. ....+.++..+....+.+.+|++|.+. .+.
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP 160 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence 000 0000000011111 11111111 134556899999864 334555555554444567677666543 332
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV 288 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 288 (373)
.. ......+.+.+++.++....+...+...... ...+....|++.++|.+..+..
T Consensus 161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 1234678999999999999988876433222 3356688899999998864433
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=8.9e-07 Score=84.01 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=109.6
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc-------eEEEe-echhhhcc--c
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA-------SCFLA-NVREISKK--S 152 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-------~~~~~-~~~~~~~~--~ 152 (373)
.-..++|-+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+...... .+..+ .+..+... .
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 34568999999999988887652 24678999999999999999999976432110 00000 00000000 0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEe-CCh
Q 017364 153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITS-RDK 228 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTt-R~~ 228 (373)
+... +.........++...+...... +.+++-++|+|+++. ...+..++..+....+.+.+|++| +..
T Consensus 98 Dv~e--------idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 98 DIIE--------IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred cEEE--------eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 0000 0000000011111111111111 234567899999975 344666665554334466666544 433
Q ss_pred hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364 229 HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV 288 (373)
Q Consensus 229 ~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 288 (373)
.+.... .....+++.+++.++....+...+...... ...+....|++.++|.+.-+..
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 333222 233578999999999999998877433222 2345678899999998865533
No 51
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.85 E-value=3.7e-07 Score=78.66 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=99.4
Q ss_pred Ccccch-hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364 86 ELVGLD-SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ 164 (373)
Q Consensus 86 ~~vGR~-~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (373)
.++|-. ..+..+..+.... ..+.+.|+|++|+|||+|+..+++........+.++. ..... .....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~------~~~~~---- 90 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA------WFVPE---- 90 (235)
T ss_pred cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh------hhhHH----
Confidence 344622 2355555544332 2367899999999999999999987765433444443 11100 00000
Q ss_pred HhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---HH----HHHHhcCCCCCCCCcEEEEEeCChh--------
Q 017364 165 LLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---QQ----LESLAGKHDWFGIGSRIFITSRDKH-------- 229 (373)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~----l~~l~~~~~~~~~g~~iliTtR~~~-------- 229 (373)
. .+.+.. .-+|++||++.. .. +-.+...... ..+.++|+||+...
T Consensus 91 --------------~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 --------------V----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------------H----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccH
Confidence 1 111111 247899999642 11 2222222111 11246899988653
Q ss_pred -hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 230 -LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 230 -~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
+...+.....+.+.+++.++-.+++.+++.... ..-.+++.+-|++.+.|..-.+..+-..+
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 233344557899999999999999887553322 12345678888888888777666555544
No 52
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.85 E-value=4.1e-07 Score=89.91 Aligned_cols=175 Identities=23% Similarity=0.259 Sum_probs=101.4
Q ss_pred ccCcccchhhHH---HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 84 LKELVGLDSRLE---KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 84 ~~~~vGR~~~~~---~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
-..|+|.+..+. .+...+..+ ..+.+.|+|++|+||||||+.+++.....|. .+. . . ......
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a--~--~~~i~d---- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-A--V--LAGVKD---- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-h--h--hhhhHH----
Confidence 356899988774 566666644 3467889999999999999999987654431 111 0 0 000000
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEE--eCChhh--Hh
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFIT--SRDKHL--LM 232 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliT--tR~~~~--~~ 232 (373)
...........+ .+++.+|+|||++. ....+.+..... .+..++++ |.+... ..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 011111111111 24567999999974 344455554433 34545543 344321 11
Q ss_pred hc-CCCceEeCCCCCHhHHHHHHHHhhcC-----CCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 233 AH-GVDEVYMHEHLNYDEALGLFCLKAFK-----SHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.. .....+.+++|+.++...++...+.. .........+....|++.+.|+...+.-+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~L 218 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNAL 218 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11 12357899999999999999876531 011122345678889999999866554443
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=5.5e-07 Score=81.32 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=107.3
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-----ccceEEEeechhhhcccCHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-----FEASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
..++|-+...+.+...+..+ .-.+...++|+.|+||||+|+.+++.+... ++....+... ......... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 35789888889999888754 224678899999999999999999976322 2222222100 000111111 12
Q ss_pred HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cC
Q 017364 160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HG 235 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~ 235 (373)
.+...+.. .-..+++-++|+|+++ +......++..+.....++.+|++|.+.+.. .. ..
T Consensus 80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 22221100 0112345567777764 4556677777666556788888888766432 11 12
Q ss_pred CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364 236 VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287 (373)
Q Consensus 236 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 287 (373)
....+.+.+++.++...++...... ...+.++.++..++|.|.-+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHH
Confidence 3458899999999999888765421 113447788999999886554
No 54
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=3.1e-07 Score=88.89 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=108.6
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+....... +. .+.. ......+.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~-pCg~-------C~sCr~i~ 83 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GE-PCGV-------CQSCTQID 83 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CC-CCcc-------cHHHHHHh
Confidence 34579999999999999988652 246789999999999999999998754321100 00 0000 00000000
Q ss_pred HH----HhCCCCCCCcchhhhHHHHHH---h-hCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 163 SQ----LLNLPDSGVWNVYDGMNMIRS---R-LRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 163 ~~----~~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
.. +..........++.....+.. . ..+++-++|||+++... ....++..+......+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 000000000111111111111 0 13456689999987533 33444443332234566777775542 21
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.. .+....+.+.+++.++....+...+-..... ...+.+..|++.++|.+.-+..+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 11 1122467888999999999998776432222 335678899999999986655444
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.84 E-value=7.6e-08 Score=88.77 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=98.9
Q ss_pred cCcccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..+.|++.+++.+...+... -..++-+.|+|++|+|||+||+.+++.....|-... ..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~------- 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GS------- 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hH-------
Confidence 35789999999988876421 122456999999999999999999997654431110 00
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--C
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--F 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~ 215 (373)
.+.....+. ........+...-...+.+|+||+++... .+..++..+.. .
T Consensus 191 ------~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ------ELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred ------HHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 011110000 00111111222224567899999986431 23333322211 1
Q ss_pred CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
..+..||.||........ ...+..+.++..+.++..++|+.+........ . -....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-D--VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--CCHHHHHHHcCCCC
Confidence 235678888875432211 12356789999999999999988764432221 1 12466777777764
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.84 E-value=6.7e-08 Score=83.11 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=97.2
Q ss_pred cCcc-cchhh-HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 85 KELV-GLDSR-LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 85 ~~~v-GR~~~-~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
++|+ |.... +..+..+.. +....+.+.|+|++|+|||+||+.+++..........++. ..... .. .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~~---------~~-~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASPL---------LA-F 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHhH---------HH-H
Confidence 3445 54443 444444443 2223467899999999999999999987654433444443 11110 00 0
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HH---HHHHhcCCCCCCCCc-EEEEEeCChhh------
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQ---LESLAGKHDWFGIGS-RIFITSRDKHL------ 230 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---l~~l~~~~~~~~~g~-~iliTtR~~~~------ 230 (373)
.. ....-+|++||++.. .. +..++.... ..+. .+|+|++....
T Consensus 86 ----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~--~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 86 ----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVR--AHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred ----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHH--HcCCcEEEEeCCCCHHhCCCCH
Confidence 00 122347889999643 22 222222211 1233 36666664321
Q ss_pred --HhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 231 --LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 231 --~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
...+.....+.+++++.++-..++...+.... ....++....+++.+.|++..+..+...+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11222346889999999887777766442212 12335678888889999999988877765
No 57
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=1e-07 Score=92.30 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=111.1
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+....... ....+.......+.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHHH
Confidence 34579999999999999998652 235578999999999999999998764421100 00000000111110
Q ss_pred HH----H--hCCC-CCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 163 SQ----L--LNLP-DSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 163 ~~----~--~~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
.. + +... .....++.+++..+... ..++.-++|||+++. ......++..+......+++|++|.+.. +.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0 0000 00111122222222111 245667999999974 3455556554443344666666666543 32
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.. ..-...+.+.+++.++....+...+..... ....+....|++.++|.+.-...+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 112468999999999999998876532221 1234567889999999887544443
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=8.8e-07 Score=84.53 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=107.0
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..+||-+..++.+...+..+. -...+.++|+.|+||||+|+.++..+........ ..+ +.......+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~pC-------g~C~~C~~i~ 83 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA--NPC-------NDCENCREID 83 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc--ccC-------CCCHHHHHHh
Confidence 34579999999999999997552 2356789999999999999999987643211000 000 0000000000
Q ss_pred HH----HhCCCCCCCcchhh---hHHHHHH-hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 163 SQ----LLNLPDSGVWNVYD---GMNMIRS-RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 163 ~~----~~~~~~~~~~~~~~---~~~~l~~-~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
.. +..........+++ ++..+.. -..++.-++|+|+++. ......++..+......+++|++|.+. .+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 00 00000000011111 1111111 0134556899999974 344555555444334467777766554 222
Q ss_pred hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
..+ .....+++.+++.++....+...+-..... ...+....|++.++|.+.-+..+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 111 123468899999999888776665332222 234567889999999886554443
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.81 E-value=3.2e-08 Score=82.22 Aligned_cols=181 Identities=22% Similarity=0.207 Sum_probs=98.6
Q ss_pred ccccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
..-++|||.+..+..+.-.+.. ..+....+.+|||+|+||||||..+++.....|. +.. ......
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~k-------- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIEK-------- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC--S--------
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhhh--------
Confidence 3457899999988887766552 2334678999999999999999999998776542 111 100111
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCC--------CCCC----------
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDW--------FGIG---------- 218 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~--------~~~g---------- 218 (373)
..++...+. .+ +++-+|.+|+++.. .+-+.+.+.... .+++
T Consensus 89 -----------------~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 -----------------AGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -----------------CHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -----------------HHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 011111111 12 23457888999743 222222222110 0111
Q ss_pred -cEEEEEeCChhhHhhcCC--CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC
Q 017364 219 -SRIFITSRDKHLLMAHGV--DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG 295 (373)
Q Consensus 219 -~~iliTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 295 (373)
+.|=.|||...+...+.. .-..+++..+.+|-..++.+.+..-. .+...+.+.+|++.|.|.|.-..-+...++.
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 223347776543322222 23457999999999999987764322 2355678999999999999877777666644
No 60
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.81 E-value=4.2e-07 Score=75.74 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364 189 HKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP 264 (373)
Q Consensus 189 ~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 264 (373)
+.+-++|+||++.. ...+.++..+......+.+|++|++.. +.... .....+.+.+++.++..+.+....
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 45668999998643 335555555544345666777776542 22211 123589999999999999987761
Q ss_pred CchHHHHHHHHHHHhCCCch
Q 017364 265 WKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 265 ~~~~~~~~~~i~~~~~g~Pl 284 (373)
...+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 124568899999999985
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.80 E-value=2.6e-07 Score=87.04 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=98.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR 186 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (373)
..+.|+|+.|+|||+|++.+++.+.... ..++++. . ..+...+...+... ......+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~---------~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G---------DEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 5689999999999999999999765432 2223332 1 12233333322110 0112233343
Q ss_pred hCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh---------hHhhcCCCceEeCCCCCHhHH
Q 017364 187 LRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH---------LLMAHGVDEVYMHEHLNYDEA 250 (373)
Q Consensus 187 l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~ea 250 (373)
+. ..-+||+||+.... .+-.+..... ..|..||+|+.... +...+...-.+.+.+++.++.
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 33 34588899995321 2222222222 23446888876432 223334456788999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
.+++.+.+-.........+++.+-|++.+.|.|..+.-+...+
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999888743221112446788999999999999987776444
No 62
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1e-06 Score=82.12 Aligned_cols=200 Identities=12% Similarity=0.103 Sum_probs=108.9
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeechhhhcccCHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
.-..++|.+...+.+...+..+. -+..+.++||+|+||||+|+.++..+... +...-|.... ....+.....+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~ 89 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRD 89 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHH
Confidence 34579999998999998888652 23568899999999999999999876432 1111011000 000000000000
Q ss_pred HHHH----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-h
Q 017364 161 LISQ----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD-K 228 (373)
Q Consensus 161 ~~~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~-~ 228 (373)
+... +...........++... +.+.+ .+.+-++|+|+++.. ..++.++..+....+.+.+|+++.+ .
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0000 00000000011222221 22222 345568899998743 3455555554433446666665543 3
Q ss_pred hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 229 HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 229 ~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.+.... .....+++.+++.++....+...+.... .....+.+..+++.++|.+.-+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332221 1124688999999999988877653221 1133567899999999988655443
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=3.7e-07 Score=87.12 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=107.9
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhhhc--ccCHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREISK--KSGLVFL 157 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~--~~~~~~~ 157 (373)
-..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+. .+-.+ .+..+.. ..++..+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3579999999999999887652 23568899999999999999999876432110 00000 0000000 0000000
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMA 233 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~ 233 (373)
-........+...++..+... ..+++-++|+|+++. ....+.++..+......+.+|++|.+. .+...
T Consensus 94 --------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~t 165 (546)
T PRK14957 94 --------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVT 165 (546)
T ss_pred --------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhh
Confidence 000000001111222222211 235667999999974 344555555554333456666555544 23222
Q ss_pred -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364 234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL 289 (373)
Q Consensus 234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 289 (373)
......+++.+++.++....+...+.... .....+....|++.++|.+. ++..+
T Consensus 166 I~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 166 ILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred HHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12346889999999999888877553322 12345567889999999775 44444
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=1.3e-06 Score=83.80 Aligned_cols=192 Identities=15% Similarity=0.068 Sum_probs=104.5
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..++|++..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+.... |... ...+.....+.+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHHHHH
Confidence 34579999999999999887542 236788999999999999999999864321 1100 0000000000000
Q ss_pred HHH----hCCCCCCCcch---hhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 163 SQL----LNLPDSGVWNV---YDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 163 ~~~----~~~~~~~~~~~---~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
... ........... +.....+... ..+++-++|+|+++. ......++..+......+.+|++|.+. .+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 000 00000000111 1111111111 122344799999864 334444544333223355566555443 232
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
.. ......+++.+++.++....+...+...... ...+.+..+++.++|.+.-+
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 22 1224578999999999999888766332211 22456888999999977543
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3e-06 Score=81.83 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=108.4
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..+||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+....... . ..+. .......+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~pCg-------~C~~C~~i~~ 81 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TPCG-------VCESCVALAP 81 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Cccc-------ccHHHHHhhc
Confidence 3579999999999999998652 235678999999999999999998765321000 0 0000 0000000000
Q ss_pred H------H--hCC-CCCCCcchhhhHHHHHHh-hCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCC-hhh
Q 017364 164 Q------L--LNL-PDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRD-KHL 230 (373)
Q Consensus 164 ~------~--~~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~-~~~ 230 (373)
. . ... .......+.++...+... ..+++-++|+|+++ +....+.|+..+......+.+|++|.+ ..+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 0 000 000011111111111111 13455688999986 344555665555444456666665544 333
Q ss_pred Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364 231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL 289 (373)
Q Consensus 231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 289 (373)
...+ .....+.+.+++.++..+.+...+...... ...+....|++.++|.+. ++..+
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3221 234679999999999998887765332221 234567888999999875 44443
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=1.1e-06 Score=87.98 Aligned_cols=190 Identities=14% Similarity=0.097 Sum_probs=106.4
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..+||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+........- .+. .......+..
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--pCg-------~C~sC~~~~~ 83 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCG-------ECDSCVALAP 83 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--CCc-------ccHHHHHHHc
Confidence 3579999999999999998652 23568899999999999999999886432110000 000 0000000000
Q ss_pred H------HhCCCCCCCcchhhhHHHHHH-----hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 017364 164 Q------LLNLPDSGVWNVYDGMNMIRS-----RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-H 229 (373)
Q Consensus 164 ~------~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~ 229 (373)
. +..........+++... +.+ -..++.-++|||+++. ....+.|+..+......+.+|++|.+. .
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0 00000000011111111 111 1234556889999874 344555555554434566666666543 3
Q ss_pred hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 230 LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 230 ~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
+...+ .....|++.+++.++...++...+-..... ...+....|+..++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 33322 234678999999999998887765322211 23455778899999988444
No 67
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.4e-06 Score=78.03 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=104.6
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--------ccceEEEeechhhhcccCHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--------FEASCFLANVREISKKSGLV 155 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~ 155 (373)
-..++|.+...+.+...+..+. -.+.+.++|++|+||||+|+.++..+... +...+.-.+ .......
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~- 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNNSV- 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCCCH-
Confidence 3568999999999999997652 24688899999999999999998876432 111111000 0000001
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHh
Q 017364 156 FLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLM 232 (373)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~ 232 (373)
.....+....... -+.+++-++++|+++.. ..+..+...+......+.+|+++... ....
T Consensus 91 ~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 DDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1111111111000 01234558999998643 33555544333223345555555432 2221
Q ss_pred h-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 233 A-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 233 ~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
. ......+++.+++.++....+...+...... ...+.++.+++.++|.+..+...
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~~~~ 209 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDALSI 209 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHHHH
Confidence 1 1223578999999999998888766432221 23467888999999977644333
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.8e-06 Score=84.28 Aligned_cols=196 Identities=15% Similarity=0.098 Sum_probs=109.8
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..+||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.......-+ ...+.......+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHhc
Confidence 3579999999999998887652 23567899999999999999999876422110000 00000011111110
Q ss_pred HHhC----CCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 164 QLLN----LPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 164 ~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
.... .........+... .+.+. ....+-++|+|+++.. ...+.|+..+......+.+|+++.+. .+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 0000 0000011111111 11111 1245668999998643 44555655444333466666666543 222
Q ss_pred hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
..+ .....+.+.+++..+....+...+...... ...+.+..|++.++|.+..+.....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 123578899999999998887776432222 2346688999999999976555443
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.73 E-value=1e-07 Score=83.67 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=102.0
Q ss_pred cCcccchhhHH---HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELVGLDSRLE---KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~vGR~~~~~---~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..+||.+..+. .|.+++..+ ..+.+.+||++|+||||||+.++..-+.+. ..|+. .+....-..-.+.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDI 209 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHH
Confidence 45677665433 333444433 457789999999999999999998766542 33443 12222222222333
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHhh---c
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFI--TSRDKHLLMA---H 234 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~ili--TtR~~~~~~~---~ 234 (373)
+++.- -...+..++.+|.+|.++ +..+-+-|++... +|.-++| ||-|+.+... +
T Consensus 210 fe~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 210 FEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHH
Confidence 33211 011235678899999996 4445566666553 5665555 7777654211 2
Q ss_pred CCCceEeCCCCCHhHHHHHHHHhh---cCCCC---CC-----chHHHHHHHHHHHhCCCch
Q 017364 235 GVDEVYMHEHLNYDEALGLFCLKA---FKSHK---PW-----KGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 235 ~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~---~~-----~~~~~~~~~i~~~~~g~Pl 284 (373)
....++.|++|..++...++.+.. +.... +. .....+.+-++..|.|-..
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 244688999999999999987632 11111 11 1234556677777877654
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.4e-06 Score=82.15 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=104.9
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+....... ...+. .......+..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~pcg-------~C~~C~~i~~ 84 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--ATPCG-------VCSACLEIDS 84 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCCCC-------CCHHHHHHhc
Confidence 3568999999999999888642 235678999999999999999998764321100 00000 0000000000
Q ss_pred ----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364 164 ----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM 232 (373)
Q Consensus 164 ----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~ 232 (373)
.+...........+.....+... ..+++-++|+|+++.. .....++..+......+.+|++|.+.. +..
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 00000000001111111111111 1345669999999743 335555554443334666666665442 221
Q ss_pred hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
.+ .....+++.+++.++....+...+..... ....+....|++.++|.+.-+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 11 11357889999999999888776532221 123456788999999988643
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.72 E-value=3.4e-07 Score=91.83 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=87.4
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
+.++||+.+++.+...|..... .-+.++|++|+|||++++.+++++.... ...+|..+.........
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~----- 254 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK--NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK----- 254 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc-----
Confidence 5799999999999998875533 4578999999999999999999874321 23344332211110000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccHH-----------HHHHHhcCCCCCCCCcEEEEEeC
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIELQ-----------QLESLAGKHDWFGIGSRIFITSR 226 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~-----------~l~~l~~~~~~~~~g~~iliTtR 226 (373)
...+....+..+...+ ...+.+|++|+++... .-+-+.+.+. ....++|-+|.
T Consensus 255 -------------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt 319 (731)
T TIGR02639 255 -------------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTT 319 (731)
T ss_pred -------------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecC
Confidence 0011222222222222 3457899999986331 1222333332 12234555554
Q ss_pred ChhhHh------h-cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 227 DKHLLM------A-HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 227 ~~~~~~------~-~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
..+... . ......+.+++++.++..++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322100 0 1123578999999999999998654
No 72
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.72 E-value=4.5e-07 Score=83.65 Aligned_cols=220 Identities=13% Similarity=0.155 Sum_probs=108.8
Q ss_pred EEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCc-----------CCCCChhHHHhhhh
Q 017364 2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWE-----------LKDRNEPEFIVDIV 70 (373)
Q Consensus 2 v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~ 70 (373)
|++-+.+++....+.|.|||+++.....+.... +++.|.+..++++....+. -+..+..+...++.
T Consensus 285 vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~---q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~ 361 (614)
T KOG0927|consen 285 VCTNIIHLDNKKLIYYEGNYDQYVKTRSELEEN---QMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKME 361 (614)
T ss_pred HhhhhheecccceeeecCCHHHHhhHHHHHhHH---HHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHh
Confidence 456677888888889999999998877664322 2333333333333222111 11122222222222
Q ss_pred hccc-c------cccC---------cc--ccccCcccchh---hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHH
Q 017364 71 KEIS-C------KISA---------KS--ETLKELVGLDS---RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVY 129 (373)
Q Consensus 71 ~~v~-~------~~~~---------~~--~~~~~~vGR~~---~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 129 (373)
.... . .+.. +| .....-+|.++ ....+...+..+ ..|+++||+|+|||||.+.++
T Consensus 362 ~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~----srvAlVGPNG~GKsTLlKl~~ 437 (614)
T KOG0927|consen 362 ADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLD----SRVALVGPNGAGKSTLLKLIT 437 (614)
T ss_pred hccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcc----cceeEecCCCCchhhhHHHHh
Confidence 2110 0 0110 11 11122333332 334444444444 679999999999999999999
Q ss_pred HHHhccccceE------EE-eechhh----------------hcccCHHHHHHHHHHHHhCCCCCC------CcchhhhH
Q 017364 130 DLISHEFEASC------FL-ANVREI----------------SKKSGLVFLQKQLISQLLNLPDSG------VWNVYDGM 180 (373)
Q Consensus 130 ~~~~~~f~~~~------~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 180 (373)
..+.+.-+.+. +. .+-+.. ..........+.++....-..... .++-....
T Consensus 438 gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r 517 (614)
T KOG0927|consen 438 GDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR 517 (614)
T ss_pred hccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchh
Confidence 87654322111 11 000000 000111222233333321111111 11112222
Q ss_pred HHHHHhhCCCceEEEec------ccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh
Q 017364 181 NMIRSRLRHKKVLLVID------DVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA 233 (373)
Q Consensus 181 ~~l~~~l~~~~~LlvlD------dv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~ 233 (373)
-.+...+-..+-+|+|| |+...+.+.+.+..++ |+ ++++|++..+...
T Consensus 518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~----Gg-vv~vSHDfrlI~q 571 (614)
T KOG0927|consen 518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP----GG-VVLVSHDFRLISQ 571 (614)
T ss_pred HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC----Cc-eeeeechhhHHHH
Confidence 33444456778899999 4566777888888876 66 8889998866544
No 73
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.9e-06 Score=81.76 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=109.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|-+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.......- ...........+..
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHhc
Confidence 3568998888888898887642 2467889999999999999999987643210000 00000000000000
Q ss_pred HH----hCCCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 164 QL----LNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 164 ~~----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
.. ..........++. ++.+.+. ..+++-++|+|+++.. .....|+..+........+|++|.+. .+.
T Consensus 85 g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00 0000000001111 1112111 2345678999998643 44555555543333456666666554 332
Q ss_pred hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 017364 232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP-LALKVLGSFL 293 (373)
Q Consensus 232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 293 (373)
..+ .....+.+.+++.++....+...+..... ....+.+..|++.++|.+ .++..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 221 12347889999999999988876543221 133566888999999975 5666665443
No 74
>PRK09087 hypothetical protein; Validated
Probab=98.71 E-value=2.6e-07 Score=78.90 Aligned_cols=142 Identities=14% Similarity=0.040 Sum_probs=88.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
+.+.|+|++|+|||+|++.++.... ..++.. . .+....... +.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~---------~~~~~~~~~----------------------~~ 87 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N---------EIGSDAANA----------------------AA 87 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H---------HcchHHHHh----------------------hh
Confidence 6789999999999999998887532 223321 0 111111111 01
Q ss_pred CCceEEEeccccc----HHHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhcCCCceEeCCCCCHhHHHHHHH
Q 017364 189 HKKVLLVIDDVIE----LQQLESLAGKHDWFGIGSRIFITSRDK---------HLLMAHGVDEVYMHEHLNYDEALGLFC 255 (373)
Q Consensus 189 ~~~~LlvlDdv~~----~~~l~~l~~~~~~~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~ 255 (373)
+ -+|++||++. ...+-.+..... ..|..+|+|++.. ++...+.....+++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 2788899853 233433433332 2366788888743 233344556789999999999999998
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 256 LKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
+.+-... ....+++.+-|++.+.|..-.+..+...+
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8874322 12346678888888888877776554444
No 75
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=6.9e-06 Score=78.05 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=107.3
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cceEEEeechhhhc--ccCHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EASCFLANVREISK--KSGLVF 156 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~--~~~~~~ 156 (373)
-..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+...- ++..- .++..+.. ..++..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDLIE 92 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcEEE
Confidence 3568999999999999997652 235678899999999999999998764210 11100 00000000 000000
Q ss_pred HHHHHHHHHhCCCC-CCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364 157 LQKQLISQLLNLPD-SGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL 231 (373)
Q Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~ 231 (373)
..... ....+...+...+... ..+++-++|+|+++.. ...+.++..+....+...+|++|.+. .+.
T Consensus 93 ---------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 93 ---------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred ---------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 00000 0000111111111111 1345669999998643 34455554444333455566555443 222
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.. ......+.+.+++.++....+...+-.... ....+.+..+++.++|.+..+..+.
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 122357899999999999888876533221 1234667889999999887555544
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.7e-06 Score=82.71 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=107.9
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
.-..++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.++..+...- +...|...... ..+.....+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHHH
Confidence 3457999999999999988754 2235688999999999999999998764321 11111110000 0000000000
Q ss_pred HHHHH-hC---CCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-hh
Q 017364 161 LISQL-LN---LPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD-KH 229 (373)
Q Consensus 161 ~~~~~-~~---~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~-~~ 229 (373)
+.... .+ .........++........ +.+.+-++|+|+++.. ...+.|+..+......+.+|++|.+ ..
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00000 00 0000111122222221111 2344557899998653 3355555554433345555555543 33
Q ss_pred hHhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364 230 LLMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287 (373)
Q Consensus 230 ~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 287 (373)
+... ......+++.+++.++....+...+..... ....+.++.|++.++|...-+.
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHH
Confidence 3322 223468999999999999888766532221 1235668899999999766443
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=1.4e-06 Score=82.09 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=100.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR 186 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (373)
...+.|+|++|+|||+|+..+++.+...++ ..+.+... ..+...+...+... . ...+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~---------~~f~~~~~~~~~~~------~----~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS---------EKFLNDLVDSMKEG------K----LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH---------HHHHHHHHHHHhcc------c----HHHHHHH
Confidence 345999999999999999999998765543 23333222 12233333322110 1 1223333
Q ss_pred hCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeC-ChhhH--------hhcCCCceEeCCCCCHhHH
Q 017364 187 LRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSR-DKHLL--------MAHGVDEVYMHEHLNYDEA 250 (373)
Q Consensus 187 l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea 250 (373)
+....-+|++||++.. ..+-.+...+. ..|..+|+||. .+... ..+.....+.+++.+.+.-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 3344568999999632 12222222221 12446888774 33221 1223445788999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHh
Q 017364 251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRL 308 (373)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l 308 (373)
.+++.+.+...... ..+++...|++.+.|+.-.|.-+-..+ .+ -+......++..+
T Consensus 269 ~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 269 KKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99998877432222 335678889988888766665444333 12 2344555555543
No 78
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=2.9e-06 Score=82.31 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=111.2
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce----EEEeechhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS----CFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~~ 158 (373)
....++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..+....... .+- .+ +.....
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-~c-------g~c~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-LC-------GVGEHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-cC-------cccHHH
Confidence 34679999999999999998652 245788999999999999999999764322100 000 00 000000
Q ss_pred HHHHHHH----hCCCCCCCcchhh---hHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-
Q 017364 159 KQLISQL----LNLPDSGVWNVYD---GMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD- 227 (373)
Q Consensus 159 ~~~~~~~----~~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~- 227 (373)
..+.... ..........+++ ++..+... +..++-++|+|+++.. ...+.++..+......+.+|++|.+
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 1111000 0000000111222 22211111 1334557899998643 3455555544433456667666543
Q ss_pred hhhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 228 KHLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 228 ~~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
..+...+ .....+.+.+++.++....+...+...... ...+....|++.++|.+.-+....
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332222 123578999999999999998776332211 234668889999999987665444
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.66 E-value=9.3e-07 Score=89.54 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=99.1
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVF 156 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 156 (373)
.-+.++||+.++.++...|..... ..+.++|++|+||||+|+.+++++.... ...+|..+...+....
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~---- 258 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA---- 258 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc----
Confidence 345799999999999998876533 4567999999999999999999875431 1223322221110000
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHH-HHHhh-CCCceEEEecccccHH---------HHH-HHhcCCCCCCCCcEEEEE
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNM-IRSRL-RHKKVLLVIDDVIELQ---------QLE-SLAGKHDWFGIGSRIFIT 224 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l-~~~~~LlvlDdv~~~~---------~l~-~l~~~~~~~~~g~~iliT 224 (373)
.........+.. +.+.. .+.+++|++|+++... +.. -+.+.+. ....++|-+
T Consensus 259 --------------~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Iga 322 (852)
T TIGR03345 259 --------------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAA 322 (852)
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEe
Confidence 000111111111 11111 2468999999986532 111 1333322 123456666
Q ss_pred eCChhhHhh-------cCCCceEeCCCCCHhHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHhCCCc
Q 017364 225 SRDKHLLMA-------HGVDEVYMHEHLNYDEALGLFCLKAFK--SHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 225 tR~~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
|........ ......+.+++++.+++..+++..... .........+....+++.+.++.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 654322110 113358999999999999997544321 11112233455667777776554
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.66 E-value=9.2e-07 Score=82.03 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
.+.|++.+++.+...+.. +-..++-|.|+|++|+|||++|+.+++.....| .......
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~~~------- 200 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVGSE------- 200 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeehHH-------
Confidence 467999999988876632 112346699999999999999999998765321 1111111
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~ 216 (373)
+.....+. ........+...-...+.+|+||+++... .+..++..... ..
T Consensus 201 ------l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 201 ------LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred ------HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111110 00111111222224567899999987531 12233322221 12
Q ss_pred CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
.+..||.||........ ...+..+.+++.+.++..++|+.+........ . .....+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence 35567777765433221 12346799999999999999987764322211 1 11455667776654
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.64 E-value=6.3e-07 Score=91.02 Aligned_cols=151 Identities=11% Similarity=0.082 Sum_probs=86.7
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
...+||+++++.+...|..... +-+.++|++|+|||++|..++.++... -+..+|..+.....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~--------- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL--------- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh---------
Confidence 4699999999999999975433 456799999999999999999987532 12344443221110
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHH-HhhCCCceEEEecccccHH---------HHHHHh-cCCCCCCCCcEEEEEeCC
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIR-SRLRHKKVLLVIDDVIELQ---------QLESLA-GKHDWFGIGSRIFITSRD 227 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~---------~l~~l~-~~~~~~~~g~~iliTtR~ 227 (373)
... ....+....+..+. +....++.+|++|+++... ....++ +.+. ....++|.+|..
T Consensus 248 --------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 248 --------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred --------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 000 00112222222222 2223567899999986322 122222 2221 123456666554
Q ss_pred hhhHhh-------cCCCceEeCCCCCHhHHHHHHHHh
Q 017364 228 KHLLMA-------HGVDEVYMHEHLNYDEALGLFCLK 257 (373)
Q Consensus 228 ~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~ 257 (373)
...... ......+.++..+.++...+++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 432110 113356788889999998887643
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.64 E-value=2.3e-06 Score=80.24 Aligned_cols=178 Identities=20% Similarity=0.153 Sum_probs=99.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (373)
...+.|+|++|+|||+|++.+++.+....+ .++++. .. .+...+...+... . ...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~---------~~~~~~~~~~~~~------~----~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SE---------KFTNDFVNALRNN------K----MEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HH---------HHHHHHHHHHHcC------C----HHHHHH
Confidence 356899999999999999999998765532 233332 21 1122222222111 1 122333
Q ss_pred hhCCCceEEEecccccHH----HHHHHhcCCCC-CCCCcEEEEEeCCh-hh--------HhhcCCCceEeCCCCCHhHHH
Q 017364 186 RLRHKKVLLVIDDVIELQ----QLESLAGKHDW-FGIGSRIFITSRDK-HL--------LMAHGVDEVYMHEHLNYDEAL 251 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~~~----~l~~l~~~~~~-~~~g~~iliTtR~~-~~--------~~~~~~~~~~~l~~L~~~ea~ 251 (373)
.+.+ .-+|+|||++... ..+.+...+.. ...+..+|+|+... .. ...+.....+.+++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3332 3488999996421 11122211110 01245577777643 21 122223346899999999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHh
Q 017364 252 GLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRL 308 (373)
Q Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l 308 (373)
.++...+...... ..+++.+.|++.+.|..-.|.-+...+ .+ -+......++..+
T Consensus 275 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 275 AILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 9998887443222 336778889999999887655443332 11 2345566666654
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=7.8e-06 Score=77.85 Aligned_cols=196 Identities=13% Similarity=0.133 Sum_probs=109.4
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccc--eEEEe-echhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEA--SCFLA-NVREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~-~~~~~~~~~~~~~~~ 158 (373)
.-..++|-+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-.. ... .+... .+.........
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~---- 86 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI---- 86 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC----
Confidence 34579999989999999987652 24567899999999999999999876321 110 00000 00000000000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
.+...........+.....+... ..+++-++|+|+++. .+....++..+......+++|++|.+.. +.
T Consensus 87 -----dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 87 -----DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred -----eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000000000112222222110 124456889999864 3445555544433344677777776542 11
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.. ......+++.+++.++....+...+...... ...+.+..|++.++|.+.-+..+.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 11 1123578999999999999987766332222 235678899999999986665554
No 84
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.3e-07 Score=93.43 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+..+ .+++|+|++|+|||||++.++....+.
T Consensus 327 il~~isl~i~~G----e~~~l~G~NGsGKSTLlk~l~G~~~p~ 365 (638)
T PRK10636 327 ILDSIKLNLVPG----SRIGLLGRNGAGKSTLIKLLAGELAPV 365 (638)
T ss_pred eeccceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444444455 789999999999999999999876543
No 85
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.2e-05 Score=78.85 Aligned_cols=191 Identities=13% Similarity=0.177 Sum_probs=105.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|.+...+.+...+..+. -.+.+.++||.|+||||+|+.++..+-.......+- .+.... ....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~----------~~~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECI----------ENVN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHH----------Hhhc
Confidence 3568999999999999997652 246778999999999999999998754321100000 000000 0000
Q ss_pred H---HhCCCC---CCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh
Q 017364 164 Q---LLNLPD---SGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRD-KHLLMA 233 (373)
Q Consensus 164 ~---~~~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~-~~~~~~ 233 (373)
. ...... .....++.+...+... ..+++-++|+|+++. ......|+..+......+.+|++|.+ ..+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 000000 0001111222222111 134566899999863 34555565544433345555555543 333322
Q ss_pred -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364 234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV 288 (373)
Q Consensus 234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 288 (373)
......+.+.+++.++....+...+..... ....+.+..++..++|.+.-+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 122358999999999999888765432221 12245678899999997754433
No 86
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.5e-05 Score=77.01 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=110.3
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cceEEEeechhhhcccCHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 157 (373)
.-..++|-+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..- ++..- .++..+.....+.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-~~C~~i~~~~~~d-- 89 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-SSCKSIDNDNSLD-- 89 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-hHHHHHHcCCCCC--
Confidence 34579999999999999998652 346788999999999999999999764321 11000 0000000000000
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHH---HHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMI---RSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HL 230 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~ 230 (373)
+...........+...... ... ..+++-++|+|+++.. .....++..+....+.+.+|++|.+. .+
T Consensus 90 -------v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 90 -------VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred -------eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 0000000001111211111 111 2355668999998643 44566666655444566676666543 22
Q ss_pred Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
...+ .....+++.+++.++....+...+...... ..++.+..|++.++|.+..+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 123468899999999998888766332222 33567888999999988655443
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.60 E-value=8.7e-07 Score=77.81 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=68.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (373)
...+.++|++|+||||+|+.++..+.... ....++. + . ... +.....+. ........+.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~---~----~~~----l~~~~~g~------~~~~~~~~~~~ 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V---E----RAD----LVGEYIGH------TAQKTREVIKK 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e---c----HHH----hhhhhccc------hHHHHHHHHHh
Confidence 46788999999999999999998754221 1111111 0 0 000 11111110 01111122222
Q ss_pred hhCCCceEEEeccccc----------HHHHHHHhcCCCCCCCCcEEEEEeCChhh---H-----hhcCCCceEeCCCCCH
Q 017364 186 RLRHKKVLLVIDDVIE----------LQQLESLAGKHDWFGIGSRIFITSRDKHL---L-----MAHGVDEVYMHEHLNY 247 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~----------~~~l~~l~~~~~~~~~g~~iliTtR~~~~---~-----~~~~~~~~~~l~~L~~ 247 (373)
. ...+|++|+++. .+.+..+............+++++..... . -.......+.+++++.
T Consensus 104 a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 104 A---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred c---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 2 134889999974 23445555544332333445555543221 0 0111234688999999
Q ss_pred hHHHHHHHHhhc
Q 017364 248 DEALGLFCLKAF 259 (373)
Q Consensus 248 ~ea~~l~~~~~~ 259 (373)
+|..+++...+.
T Consensus 181 ~el~~Il~~~~~ 192 (261)
T TIGR02881 181 EELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 88
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.59 E-value=3e-06 Score=80.47 Aligned_cols=222 Identities=18% Similarity=0.161 Sum_probs=121.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccc--eEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEA--SCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (373)
...+.|+|++|+|||+|++.+++.+...++. ++++. ... +...+...+.. .. ...+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~---------~~~~~~~~~~~------~~----~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEK---------FTNDFVNALRN------NT----MEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHH---------HHHHHHHHHHc------Cc----HHHHHH
Confidence 3568999999999999999999988765432 23332 211 11222222211 01 122333
Q ss_pred hhCCCceEEEecccccHH----HHHHHhc---CCCCCCCCcEEEEEeCChh---------hHhhcCCCceEeCCCCCHhH
Q 017364 186 RLRHKKVLLVIDDVIELQ----QLESLAG---KHDWFGIGSRIFITSRDKH---------LLMAHGVDEVYMHEHLNYDE 249 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~~~----~l~~l~~---~~~~~~~g~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~e 249 (373)
.+. +.-+|+|||++... ..+.+.. .+. ..|..+|+||.... +...+.....+.+++++.++
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 333 34589999995321 1122221 111 12445777776542 12233344578999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHhcC-C----CCchH
Q 017364 250 ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRLER-D----PENEI 316 (373)
Q Consensus 250 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l~~-~----~~~~i 316 (373)
-.++++..+.... ..-.+++.+.|++.+.|....|.-+-..+ .+ -+....+.++..+.. . ..+.+
T Consensus 285 r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i 362 (450)
T PRK00149 285 RIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENI 362 (450)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHH
Confidence 9999988874322 12345678899999998887654443332 12 245566666765421 1 11233
Q ss_pred HHHHHhch----hCCc--------hhhHHHHhhhcccCCCCCHHHHHHHH
Q 017364 317 LDVLQISF----DGLK--------ETEKKIFLDIACFYKGKYIDYVTKIL 354 (373)
Q Consensus 317 ~~~l~~s~----~~L~--------~~~~~~l~~la~f~~~~~~~~l~~l~ 354 (373)
..++...| ++|- ...|++..|++-=--+.+...+-+.+
T Consensus 363 ~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~f 412 (450)
T PRK00149 363 QKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAF 412 (450)
T ss_pred HHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 33333333 2220 14677777777644444444444444
No 89
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.2e-07 Score=81.73 Aligned_cols=148 Identities=16% Similarity=0.273 Sum_probs=77.4
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-------cc-ceEEEee-ch-hhhcccCHHH
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-------FE-ASCFLAN-VR-EISKKSGLVF 156 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------f~-~~~~~~~-~~-~~~~~~~~~~ 156 (373)
|-|....+..+..-+.-+ ..|+|+||+|+|||||.+.+...+.+. .. .+-|+.. .. ..........
T Consensus 596 y~gqkpLFkkldFGiDmd----SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~E 671 (807)
T KOG0066|consen 596 YPGQKPLFKKLDFGIDMD----SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVE 671 (807)
T ss_pred CCCCCchhhccccccccc----ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHH
Confidence 445555666666555544 679999999999999999999765332 11 2223211 00 0111112211
Q ss_pred HHHH-----------HHHHH-hCCCCCC-----CcchhhhHHHHHHhhCCCceEEEecc------cccHHHHHHHhcCCC
Q 017364 157 LQKQ-----------LISQL-LNLPDSG-----VWNVYDGMNMIRSRLRHKKVLLVIDD------VIELQQLESLAGKHD 213 (373)
Q Consensus 157 ~~~~-----------~~~~~-~~~~~~~-----~~~~~~~~~~l~~~l~~~~~LlvlDd------v~~~~~l~~l~~~~~ 213 (373)
.+.. .+..+ +.....+ .+.-....-.+.+...+.+-+||||. +++.+.+...+..+.
T Consensus 672 yLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 672 YLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred HHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 1111 11111 1111111 11112223345566667788999994 445556666666654
Q ss_pred CCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364 214 WFGIGSRIFITSRDKHLLMAHGVDEVYMHEH 244 (373)
Q Consensus 214 ~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~ 244 (373)
|. ||+.|++..+.....+ ..+.++.
T Consensus 752 ----Gg-Vi~VsHDeRLi~eT~C-~LwVvE~ 776 (807)
T KOG0066|consen 752 ----GG-VIMVSHDERLIVETDC-NLWVVEN 776 (807)
T ss_pred ----Cc-EEEEecccceeeecCc-eEEEEcc
Confidence 55 8888898876555433 3444543
No 90
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.55 E-value=3.7e-07 Score=90.39 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+..+ .+++|+|++|+|||||++.++....+.
T Consensus 334 il~~vsl~i~~G----e~~~l~G~NGsGKSTLlk~l~G~~~p~ 372 (635)
T PRK11147 334 LVKDFSAQVQRG----DKIALIGPNGCGKTTLLKLMLGQLQAD 372 (635)
T ss_pred EEcCcEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344444444444 689999999999999999999876543
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.55 E-value=1.8e-06 Score=73.17 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=82.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
+.+.|+|++|+|||+|++.+++... ..+.... .. .. ....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~-----~~-----~~-------------------------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDI-----FF-----NE-------------------------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcchh-----hh-----ch-------------------------hHHh
Confidence 5689999999999999998776432 1222100 00 00 0011
Q ss_pred CCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364 189 HKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF 259 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~ 259 (373)
..-+|++||++..+ .+-.+...+. ..|..+|+|++... +...+.....+.+++++.++...++.+.+.
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 22478899997543 2333333222 23667888887542 223334455799999999998888877764
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 260 KSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
... ....+++.+-|++.+.|.--.+.-+-..
T Consensus 162 ~~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 162 ISS--VTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred HcC--CCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 221 1133567777888777766555544443
No 92
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.8e-05 Score=76.07 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=106.1
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce----EEEe-echhhhcc--cCHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS----CFLA-NVREISKK--SGLVF 156 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~~-~~~~~~~~--~~~~~ 156 (373)
-..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+....... |-.+ .+..+... .++..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 3579999999999999987652 246688999999999999999998764211000 0000 00000000 00000
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeC-Chh
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSR-DKH 229 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR-~~~ 229 (373)
+. .......+.....+... +.+++-++|+|+++.. .....|+..+......+.+|++|. ...
T Consensus 95 ---------ld--~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 95 ---------LD--AASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred ---------ec--ccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 00 00001111111111111 1234558899998643 345555554443334566665554 333
Q ss_pred hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 230 LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 230 ~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
+...+ .....+++.+++.++....+...+...... ...+.+..|++.++|...-+...
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 234578999999999999988766332221 23456888999999977644433
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.5e-05 Score=75.20 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=105.6
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc----eEEE-eechhhhcccCHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA----SCFL-ANVREISKKSGLVFL 157 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~----~~~~-~~~~~~~~~~~~~~~ 157 (373)
.-..++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+...-.. .+-. .++..........
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-- 91 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-- 91 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc--
Confidence 34579999999999999987652 23668899999999999999999876432100 0000 0000000000000
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHH-hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMA 233 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~ 233 (373)
+..+.+........+......+.. -..+.+-++|+|+++.. .....+...+......+.+|++|.+. .+...
T Consensus 92 ----~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 92 ----VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred ----eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 000000000000111111111110 01245668899998643 33444444443333466666666443 22221
Q ss_pred c-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364 234 H-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV 288 (373)
Q Consensus 234 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 288 (373)
+ .....+++.+++.++....+...+-.... ....+.++.|++.++|.+.-+..
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~ 221 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAES 221 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 12357899999999999888776532221 12356688899999997754433
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=3.2e-05 Score=75.03 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=105.4
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.-..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+... ..+ +.......+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~--~pC-------~~C~~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG--EPC-------NECEICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCC-------CccHHHHHHh
Confidence 34679999999999999998652 2467888999999999999999987542211000 000 0000000000
Q ss_pred HHH----hCCCCCCCcchhhhHHHHHHh-----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364 163 SQL----LNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HL 230 (373)
Q Consensus 163 ~~~----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~ 230 (373)
... ..........++.. ..+... ..++.-++|+|+++. ......++..+......+.+|++|.+. .+
T Consensus 84 ~g~~~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred cCCCCCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 000 00000000111111 111111 134566889999874 344555555444333455555555433 22
Q ss_pred Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364 231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287 (373)
Q Consensus 231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 287 (373)
...+ .....+.+.+++.++....+...+...... ...+.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2221 123568899999999998887766332222 224567888889988876443
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.51 E-value=4.4e-06 Score=84.95 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=41.4
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
-+.++||+.+++++...|..... ..+.++|++|+|||+||+.++.++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHHHhhc
Confidence 35699999999999999876533 55779999999999999999998753
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.51 E-value=5.4e-06 Score=70.76 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=103.6
Q ss_pred ccccccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364 80 KSETLKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF 156 (373)
Q Consensus 80 ~~~~~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 156 (373)
+|..-..|||.+...+.+.-.+... ....-.+.++||+|.||||||..+++.+...+. +.........-
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~g---- 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPG---- 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChh----
Confidence 3444567999998888887666532 233678999999999999999999998764321 11000011111
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-HHHHH-hcCCCC--------CCCCcE------
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-QLESL-AGKHDW--------FGIGSR------ 220 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~l~~l-~~~~~~--------~~~g~~------ 220 (373)
++.. +...+.. .-+|.+|.++... ..+++ .+.... .+++++
T Consensus 93 ---------------------Dlaa-iLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 93 ---------------------DLAA-ILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ---------------------hHHH-HHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 1111 1111222 3356678775322 11111 111110 022222
Q ss_pred -----EEEEeCChhhHhhc--CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 221 -----IFITSRDKHLLMAH--GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 221 -----iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
|=.|||...+...+ ...-+.+++-.+.+|-.+.+.+.+..-.. +...+.+.+|++...|-|.-..-+.+.+
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33588865432221 12346678888999999999887733222 2335678999999999997666555554
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=7.3e-06 Score=78.73 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=93.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc-c-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF-E-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR 186 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (373)
..+.|+|..|+|||.|+..+++.+...+ . .++++. . ..+...+...+.. .....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a---------eef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S---------EEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHHHHHHHHHHh----------ccHHHHHHH
Confidence 4589999999999999999999876432 2 233332 1 1122222222111 012223333
Q ss_pred hCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhcCCCceEeCCCCCHhHH
Q 017364 187 LRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDK---------HLLMAHGVDEVYMHEHLNYDEA 250 (373)
Q Consensus 187 l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea 250 (373)
+.+ .-+|+|||++.. +.+-.++..+. ..|..||+||+.. .+...+.....+.|.+.+.+.-
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 333 357889999532 12222332222 2245588888753 2333344566889999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
.+++.+++...... ...++++-|++.+.++.-.|.-+..
T Consensus 452 ~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 452 IAILRKKAVQEQLN--APPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99998887443222 3356788888888877666554443
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.6e-05 Score=75.34 Aligned_cols=197 Identities=14% Similarity=0.073 Sum_probs=106.4
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+-.......-.. ..+.....+.+..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~-------~Cg~C~~C~~i~~ 86 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE-------PCGKCELCRAIAA 86 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC-------CCcccHHHHHHhc
Confidence 3568999999999999988652 2356789999999999999999997643211000000 0000001111100
Q ss_pred HH----hCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364 164 QL----LNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM 232 (373)
Q Consensus 164 ~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~ 232 (373)
.. ..........++...+.+... +.+++-++|+|+++.. .....|+..+......+.+|++|.+.. +..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 00 000000001111111111111 1245568899999743 445555554443334555555555442 222
Q ss_pred hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.+ .....+.+.+++.++....+...+...... ...+.+..|++.++|.+..+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 123568888999999888877655332111 223568889999999886554443
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.50 E-value=3.8e-06 Score=85.67 Aligned_cols=152 Identities=9% Similarity=0.083 Sum_probs=86.1
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
..++||+.+++.+...|..... ..+.++|++|+|||+++..++.++.... ...+|..+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l---------- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL---------- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH----------
Confidence 5699999999999999976543 4567899999999999999999875431 223333221111
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH----------HHHHHhcCCCCCCCCcEEEEEeC
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ----------QLESLAGKHDWFGIGSRIFITSR 226 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~----------~l~~l~~~~~~~~~g~~iliTtR 226 (373)
+. .. ....+....+..+...+ .+++.+|++|+++... ...-+.+.+. .....+|.+|.
T Consensus 241 ---~a----~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt 310 (852)
T TIGR03346 241 ---IA----GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT 310 (852)
T ss_pred ---hh----cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence 00 00 00011122222222222 2468999999987432 1222222221 12234555555
Q ss_pred ChhhHh-------hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 227 DKHLLM-------AHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 227 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
....-. .......+.++.++.++...++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 443211 01123467889899999999887553
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.5e-05 Score=76.03 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=104.8
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~~~~~~~~~ 158 (373)
.-..+||.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+...... .|-.+ .+..+.......
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d--- 89 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD--- 89 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC---
Confidence 34579999999999999887652 24667899999999999999999876422110 00000 000000000000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH 234 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~ 234 (373)
++ .+.+.......++.++...+... ..++.-++|+|+++.. .....|+..+......+.+|++|.+. .+...+
T Consensus 90 --~~-eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 90 --VF-EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred --ee-eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 00000000001111111111111 1234558899998643 33445554443333456666655443 333221
Q ss_pred -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364 235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL 289 (373)
Q Consensus 235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 289 (373)
.....+++.+++.++....+...+...... ...+.+..|++.++|... ++..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123568889999999988887655322211 234567889999998764 44444
No 101
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.5e-05 Score=70.14 Aligned_cols=195 Identities=12% Similarity=0.053 Sum_probs=107.9
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc---------------ccceEEEeechhhh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE---------------FEASCFLANVREIS 149 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 149 (373)
..++|.+...+.+...+..+. -.+...++|+.|+||+++|..++..+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468899999999999988652 24789999999999999999999875322 22333332110000
Q ss_pred cccCHHHHHHHHHHHHh-CCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEE
Q 017364 150 KKSGLVFLQKQLISQLL-NLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRI 221 (373)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~i 221 (373)
........ ..... .......-.++. ++.+.+.+ .+++-++|+|+++.. .....++..+.... .+.+
T Consensus 83 g~~~~~~~----~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 GKLITASE----AEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccchhh----hhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000 00000 000000011111 12233332 345668899988643 34444444443323 3456
Q ss_pred EEEeCCh-hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 222 FITSRDK-HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 222 liTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
|++|.+. .+...+ .-...+.+.+++.++..+.+....... . .......++..++|.|.....+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHHHH
Confidence 6555544 333322 234688999999999999998764211 1 111246788999999976655444
No 102
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.46 E-value=5.1e-06 Score=82.75 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
+.++||+.+++.+...|..... ..+.|+|++|+|||++|+.++..+.... +..+|..+. .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H---
Confidence 4699999999999998886433 4467899999999999999998764321 222332111 0
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH----------HHHHHHh-cCCCCCCCCcEEEEEeC
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL----------QQLESLA-GKHDWFGIGSRIFITSR 226 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~l~~l~-~~~~~~~~g~~iliTtR 226 (373)
.++. +. ....+....+..+...+ ...+.+|++|+++.. ..+..++ +.+. ....++|.+|.
T Consensus 252 -~lla---G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 -SLLA---GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred -HHhc---cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 1110 00 00112222222222222 345679999998642 1222222 2222 12344555554
Q ss_pred ChhhHhh-------cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 227 DKHLLMA-------HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 227 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
....... .+-...+.+++++.+++..++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4332110 1133579999999999999987553
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.46 E-value=2.4e-05 Score=68.30 Aligned_cols=198 Identities=15% Similarity=0.091 Sum_probs=114.3
Q ss_pred cCcccchh---hHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-----EEEeechhhhcccCHH
Q 017364 85 KELVGLDS---RLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-----CFLANVREISKKSGLV 155 (373)
Q Consensus 85 ~~~vGR~~---~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~~ 155 (373)
+.+||... .++.+..++... ....+.+.|+|.+|+|||++++.+...+...++.. +++. +.....+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCChH
Confidence 46788654 477777777643 34467899999999999999999998765443211 2221 245567778
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC-CCceEEEecccccHH------------HHHHHhcCCCCCCCCcEEE
Q 017364 156 FLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR-HKKVLLVIDDVIELQ------------QLESLAGKHDWFGIGSRIF 222 (373)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~------------~l~~l~~~~~~~~~g~~il 222 (373)
.+...++..+...... ..+...........++ -+.-+||+|++++.- .++.+...+. =+-|.
T Consensus 111 ~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~----ipiV~ 185 (302)
T PF05621_consen 111 RFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ----IPIVG 185 (302)
T ss_pred HHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC----CCeEE
Confidence 8888888886544322 2344444444444443 344588999996532 2333333332 23455
Q ss_pred EEeCChhhHhhc-----CCCceEeCCCCCHh-HHHHHHHHh---hcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 223 ITSRDKHLLMAH-----GVDEVYMHEHLNYD-EALGLFCLK---AFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 223 iTtR~~~~~~~~-----~~~~~~~l~~L~~~-ea~~l~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
+-|++...+-.. +-...+.+++...+ +...|+... ........-...+.+..|+..++|+.--+..+-
T Consensus 186 vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred eccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 555543221110 12245566665543 344444322 222222223456789999999999876665544
No 104
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.45 E-value=5.5e-06 Score=76.63 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=95.8
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
.+.|.+...+.+...+.. +-..++-+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~s-------- 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-GS-------- 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH--------
Confidence 467888777777765531 112357799999999999999999998754332 1111 10
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~ 216 (373)
.+.....+. ........+.......+.+|+||+++... .+..++..+.. ..
T Consensus 214 -----~l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 -----EFVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -----HHHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 011111111 01111122233335678999999976421 12333332221 12
Q ss_pred CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
.+..||.||...+.... ...+..+.++..+.++...+|+.+....... +. -....++..+.|+.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~d--vd~~~la~~t~g~sg 352 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EE--VDLEDFVSRPEKISA 352 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cc--cCHHHHHHHcCCCCH
Confidence 35668888876543322 1345678999999999888887665332211 11 124566777766543
No 105
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.5e-05 Score=71.85 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=60.6
Q ss_pred CCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364 189 HKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHL-LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP 264 (373)
Q Consensus 189 ~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 264 (373)
+++-++|+|+++. ......++..+.....++.+|++|.+... ...+ .-...+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 3344567899874 44555555555443457778888887643 2222 22357899999999999998765311
Q ss_pred CchHHHHHHHHHHHhCCCchHHHHH
Q 017364 265 WKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 265 ~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
...+.+..++..++|.|+....+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567788999999755444
No 106
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.45 E-value=2.7e-05 Score=65.68 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=98.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHH----H
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNM----I 183 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l 183 (373)
.+++.++|.-|+|||.+++.+...+.++-...+.+. .+......+...++..+...+.. ........ +
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~---~~~~~~e~~~~~L 122 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKV---NVNAVLEQIDREL 122 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccc---hhHHHHHHHHHHH
Confidence 369999999999999999965555543322332221 22233444455555555442222 22222222 2
Q ss_pred HHhh-CCCc-eEEEeccccc--HHH---HHHHhcCCCCCCCCcEEEEEeCCh-------hhHhhc-CCCce-EeCCCCCH
Q 017364 184 RSRL-RHKK-VLLVIDDVIE--LQQ---LESLAGKHDWFGIGSRIFITSRDK-------HLLMAH-GVDEV-YMHEHLNY 247 (373)
Q Consensus 184 ~~~l-~~~~-~LlvlDdv~~--~~~---l~~l~~~~~~~~~g~~iliTtR~~-------~~~~~~-~~~~~-~~l~~L~~ 247 (373)
.... ++++ +.+++|+.+. ... +.-|...-...+..-+|+..-... ...... .-..+ |.++|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 2222 4555 8999998853 223 333333222222222344433322 111111 11223 89999999
Q ss_pred hHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 248 DEALGLFCLKAFKSHKP-WKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 248 ~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
++...+++.+..+...+ +-...+....|.....|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988776443322 2233466788999999999999988753
No 107
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.44 E-value=4.2e-05 Score=64.73 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=41.9
Q ss_pred ccccCcccchhhHHHHHHHHh---cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 82 ETLKELVGLDSRLEKLRFLIN---KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
.....++|.+.+.+.+..... .+ ....-+.++|..|+|||+|++.+.+.+..+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 445679999998887776543 22 2246788999999999999999999887654
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.43 E-value=3.1e-06 Score=65.91 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEeccCCcchhHHHHHHHHHHh
Q 017364 111 IGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 111 v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 109
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.43 E-value=3.9e-07 Score=86.76 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee--chhhhcccCHH------H----
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN--VREISKKSGLV------F---- 156 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~------~---- 156 (373)
|-...++.+.-.+.++ ..++|+|.+|+|||||.+.+.....+..+.+.+..+ +....+..... .
T Consensus 14 g~~~l~~~~~l~~~~G----~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 14 GDRPLLENVSLTLNPG----ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred CCceeecCCcceeCCC----CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHh
Confidence 4444556666566666 779999999999999999999987666554444322 11111111100 0
Q ss_pred -------H-------------------------------------HHHHHHHHhCCCCC-----CCcchhhhHHHHHHhh
Q 017364 157 -------L-------------------------------------QKQLISQLLNLPDS-----GVWNVYDGMNMIRSRL 187 (373)
Q Consensus 157 -------~-------------------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l 187 (373)
+ ...++.. ++.... ..+.-....-.|.+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~g-Lg~~~~~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLG-LGFPDEDRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhc-CCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 0 0011111 111111 1111222344567777
Q ss_pred CCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364 188 RHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEH 244 (373)
Q Consensus 188 ~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~ 244 (373)
-.++=+|+||.- ++..=++.++..++ | .+|++||++.+++.. +..++.++.
T Consensus 169 ~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----G-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----C-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 888899999954 34444566666655 6 599999999998876 555666653
No 110
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.43 E-value=8.3e-06 Score=79.93 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=39.5
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..+.++|++..++.+...+.... ...++|+|++|+||||||+.+.+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999998887775432 36799999999999999999987653
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.43 E-value=2.2e-05 Score=67.83 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=107.6
Q ss_pred ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc--cccceEEEeechhhhcccCHHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH--EFEASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
.....++|-+..++-+.+.+.. ...+....+||+|.|||+-|..++..+-. -|++++.-.+.+ ...+..-...
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS---derGisvvr~ 107 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS---DERGISVVRE 107 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc---ccccccchhh
Confidence 3446789999999999988876 34588999999999999999999987543 344444432222 1111111111
Q ss_pred HH--HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-c
Q 017364 160 QL--ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLLMA-H 234 (373)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~-~ 234 (373)
.+ +..+...... ....-...--++|||++++. +.|..+..........+++++.+..-..... .
T Consensus 108 Kik~fakl~~~~~~-----------~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 108 KIKNFAKLTVLLKR-----------SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhcCHHHHhhcccc-----------ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 10 1111110000 00000111248899999754 4566666555544556776666554332111 1
Q ss_pred -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
.....+..++|..++...-++..+-.... +...+..+.|++.++|--.
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHH
Confidence 12235778999999888888777643322 2345678889999988543
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.43 E-value=5.1e-06 Score=78.66 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=86.5
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhh
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREI 148 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~ 148 (373)
..+.|.+.+++.+...+.. +-..++-+.|+||+|+|||++|+.+++.+..... ...|+. +..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~- 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG- 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc-
Confidence 3467788888888776531 1122466999999999999999999998754421 222321 110
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccHH--------------HHHHHhcCCC
Q 017364 149 SKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIELQ--------------QLESLAGKHD 213 (373)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--------------~l~~l~~~~~ 213 (373)
. .++....+. ............+.. ..+++++|+||+++..- .+..++..+.
T Consensus 260 --~--------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 --P--------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred --h--------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 0 000000000 000011111112221 13578999999986421 1223333322
Q ss_pred CC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 214 WF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 214 ~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
.. ..+..||.||.....+.. ...+..+.+++.+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 11 124445555544432221 1235568999999999999998876
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.42 E-value=5.9e-06 Score=74.86 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=81.8
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
....++|.+...+.+...+..+. -+..+.++|++|+|||++|+.+++..... ...+ +... .. ....+..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i-~~~~----~~-~~~i~~~l 88 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFV-NGSD----CR-IDFVRNRL 88 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEe-ccCc----cc-HHHHHHHH
Confidence 34678999999999998887542 34677779999999999999998876322 1122 1111 11 11111111
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hhc-CCC
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRDKHLL-MAH-GVD 237 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~~-~~~ 237 (373)
...... . .+...+-++|+|+++.. .....+.........++.+|+||...... ..+ ...
T Consensus 89 ~~~~~~---------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFAST---------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHh---------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111000 0 01234568899998744 22222222122223467788888754321 111 122
Q ss_pred ceEeCCCCCHhHHHHHHH
Q 017364 238 EVYMHEHLNYDEALGLFC 255 (373)
Q Consensus 238 ~~~~l~~L~~~ea~~l~~ 255 (373)
..+.++..+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 467777888888776654
No 114
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=2e-05 Score=74.14 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=86.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
..+.|+|++|+|||+|++.+++.+......++++. . ..+...+...+... ....++..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~~~~~~l~~~----------~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTEHLVSAIRSG----------EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHHHHHHHHhcc----------hHHHHHHHcc
Confidence 56889999999999999999998765444444442 1 11222222222110 1122333333
Q ss_pred CCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCCh-h--------hHhhcCCCceEeCCCCCHhHHHH
Q 017364 189 HKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDK-H--------LLMAHGVDEVYMHEHLNYDEALG 252 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~ 252 (373)
..-+|++||+.... .+-.+...+. ..|..+|+||... . +...+.....+.+.+++.++..+
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 34588899985421 1222222111 1245688887542 1 12223344688999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 253 LFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
++.+.+-.... ....++..-|+..+.++-
T Consensus 279 iL~~k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 279 FLERKAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 99887743221 233566777777777665
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=98.41 E-value=1.5e-05 Score=78.06 Aligned_cols=180 Identities=15% Similarity=0.174 Sum_probs=100.2
Q ss_pred cCcccchhhHHHHHHHH---hcC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLI---NKG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l---~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.++..+.+...+ ... ..-++-+.|+|++|+|||+||+.++...... ++..+...+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p----~i~is~s~f------ 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP----FFSISGSEF------ 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eeeccHHHH------
Confidence 45788777655555443 321 1124569999999999999999998865322 111111110
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~--~~ 216 (373)
. ....+. ........+.......+++|+|||++.. ..+..++..... ..
T Consensus 253 ---~----~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 253 ---V----EMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred ---H----HHhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0 000000 1112233344455678899999999643 124444433221 12
Q ss_pred CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHH
Q 017364 217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLG 290 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 290 (373)
.+..||.||........ ...+..+.++..+.++-.++++.++..... ........+++.+.| .+--|..+.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHHHHH
Confidence 35556667766443221 123467889999999999999887743211 123345677777777 343444443
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.40 E-value=3.9e-06 Score=78.19 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=98.4
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
.+.|.+.+++.+...+.. +-..+.-+.|+|++|+|||++|+.+++.....|-. +. ...+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~seL------ 253 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GSEL------ 253 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cchh------
Confidence 356788888888876641 11234678899999999999999999977544311 11 0000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~ 216 (373)
.....+. ........+.....+.+.+|+||+++... .+..++..+.. ..
T Consensus 254 -------~~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 254 -------IQKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -------hhhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 0011110 01111222223334678899999875321 12222222211 12
Q ss_pred CCcEEEEEeCChhhHhhc-----CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHH
Q 017364 217 IGSRIFITSRDKHLLMAH-----GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVL 289 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~ 289 (373)
.+..||.||+....+... .....+.+++.+.++..++|..+...-.... . -....++..+.|+--| |..+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~sgAdI~~i 396 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELSGADIKAI 396 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCCHHHHHHH
Confidence 356788888766543321 2346789999999999999987663322111 1 1245566666665443 4443
No 117
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.1e-06 Score=74.96 Aligned_cols=143 Identities=17% Similarity=0.251 Sum_probs=77.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe----------echhhhcc----cCH----
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA----------NVREISKK----SGL---- 154 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~----------~~~~~~~~----~~~---- 154 (373)
.++.+.-.+..+ ..++|.||+|.|||||++.++.-+++.-+.+.... ...+.++. .++
T Consensus 19 vl~~i~l~v~~G----~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 19 VLEDISLSVEKG----EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeccEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 556666555555 78999999999999999999986554422222110 00011110 000
Q ss_pred H----------------------HHHHHHHHHH-----hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccc------cc
Q 017364 155 V----------------------FLQKQLISQL-----LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDV------IE 201 (373)
Q Consensus 155 ~----------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv------~~ 201 (373)
. ....+.++.. ....-...+.-....-.+.+.|.+.+-||+||+- .+
T Consensus 95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~ 174 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 (254)
T ss_pred HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence 0 1111222221 0001111112222234567778888999999953 33
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 202 LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 202 ~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
...+-+++..+. ..|..||++|+|-...... .+.++-|
T Consensus 175 ~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~-~D~vi~L 212 (254)
T COG1121 175 QKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY-FDRVICL 212 (254)
T ss_pred HHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh-CCEEEEE
Confidence 444555555554 2388899999998765543 3444433
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.37 E-value=2.3e-05 Score=71.64 Aligned_cols=177 Identities=18% Similarity=0.097 Sum_probs=98.4
Q ss_pred ccccCcccchhhH-HHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364 82 ETLKELVGLDSRL-EKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 82 ~~~~~~vGR~~~~-~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
...+.++|-...+ -.+...+.... .....+.|+|+.|.|||.|++.+.+......+....+. ........
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y--------~~se~f~~ 156 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY--------LTSEDFTN 156 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe--------ccHHHHHH
Confidence 3344556655432 23333333221 12578999999999999999999998877766443332 11122222
Q ss_pred HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCCh----
Q 017364 160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDK---- 228 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~---- 228 (373)
.+...+.. .....+++.. .--++++||++.. +.+-.+...+. ..|..||+|++..
T Consensus 157 ~~v~a~~~----------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l 222 (408)
T COG0593 157 DFVKALRD----------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHHHh----------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhh
Confidence 22222211 1234455555 3448889998532 12222222222 2344788888643
Q ss_pred -----hhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 017364 229 -----HLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL 282 (373)
Q Consensus 229 -----~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 282 (373)
.+...+...-.+.+.+++.+....++.+.+-..... ..+++..-++.....+
T Consensus 223 ~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~--i~~ev~~~la~~~~~n 279 (408)
T COG0593 223 NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE--IPDEVLEFLAKRLDRN 279 (408)
T ss_pred ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhcc
Confidence 233445566789999999999999998866332211 2234444444444433
No 119
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=1.5e-05 Score=68.68 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=28.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
..+.|+|++|+|||+||..+++.+......+.++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 56899999999999999999998876554455543
No 120
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.32 E-value=1.3e-05 Score=74.52 Aligned_cols=135 Identities=20% Similarity=0.163 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCC
Q 017364 91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPD 170 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (373)
...+.++...+.... .+++|.||-++|||||++.+.....+. .+++.............+.
T Consensus 23 ~~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~------------- 83 (398)
T COG1373 23 RKLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDL------------- 83 (398)
T ss_pred HhhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHH-------------
Confidence 344555555554441 299999999999999997777665544 4444322111111111111
Q ss_pred CCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh------cCCCceEeCCC
Q 017364 171 SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA------HGVDEVYMHEH 244 (373)
Q Consensus 171 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~------~~~~~~~~l~~ 244 (373)
...+......++..++||.|.....|...+..+-..++. ++++|+-+...... .+-...+.+-|
T Consensus 84 ---------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 84 ---------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ---------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 111111112267899999999999888877776554555 78888887654322 12345789999
Q ss_pred CCHhHHHHHH
Q 017364 245 LNYDEALGLF 254 (373)
Q Consensus 245 L~~~ea~~l~ 254 (373)
|+..|-..+.
T Consensus 154 lSF~Efl~~~ 163 (398)
T COG1373 154 LSFREFLKLK 163 (398)
T ss_pred CCHHHHHhhc
Confidence 9999997763
No 121
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.32 E-value=2e-05 Score=75.73 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=96.6
Q ss_pred cCcccchhhHHHHHHHHh---c-------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLIN---K-------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
.+++|.+...+.+...+. . +...++-+.++||+|+|||+||+.++....-. ++..+...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----~~~i~~~~------- 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSISGSD------- 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC----eeeccHHH-------
Confidence 467887776555544332 1 12224568999999999999999998864322 11111100
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~ 216 (373)
+ .....+. ........+.......+.+|+|||++... .+..++..... ..
T Consensus 124 --~----~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 124 --F----VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred --H----HHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 0 1111110 11122233334445677899999985421 12233322211 12
Q ss_pred CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHH
Q 017364 217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLG 290 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 290 (373)
.+..||.||........ ...+..+.++..+.++-.+++........... ......+++.+.|+ +--|..+.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence 34456666655432211 13456789999999999999987763322111 12255788888774 34454444
No 122
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.32 E-value=1.8e-05 Score=70.22 Aligned_cols=129 Identities=15% Similarity=0.095 Sum_probs=69.5
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+.++|++|+|||++|+.++..+..... ...++.. + .. .+...+.+.. .......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~----~~----~l~~~~~g~~------~~~~~~~~~~a- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T----RD----DLVGQYIGHT------APKTKEILKRA- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c----HH----HHhHhhcccc------hHHHHHHHHHc-
Confidence 5889999999999999998887643211 1122210 1 01 1122222211 11111222222
Q ss_pred CCCceEEEecccccH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh--------cCCCceEeCCCCCHh
Q 017364 188 RHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIGSRIFITSRDKHLLMA--------HGVDEVYMHEHLNYD 248 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ 248 (373)
..-+|+||+++.. +....+.........+.+||+++.....-.. ......+.+++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 2358899998632 2233344333322345667776654321111 112457899999999
Q ss_pred HHHHHHHHhhc
Q 017364 249 EALGLFCLKAF 259 (373)
Q Consensus 249 ea~~l~~~~~~ 259 (373)
|..+++...+-
T Consensus 199 dl~~I~~~~l~ 209 (284)
T TIGR02880 199 ELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999887763
No 123
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.31 E-value=1.8e-05 Score=68.07 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+..+......-..+...+.++|++|+|||+|+..+++.+......++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4444444433222235689999999999999999999876654455554
No 124
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-05 Score=70.17 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++.++||+|.|||+|++.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 47899999999999999999999753
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=98.27 E-value=0.00016 Score=64.18 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=70.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc-c-cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE-F-EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR 186 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (373)
..+.++|++|+||||+|+.+++.+... + ...-|+.. + .. .+...+.+.. .......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~----~~----~l~~~~~g~~------~~~~~~~l~~a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T----RD----DLVGQYIGHT------APKTKEVLKKA 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c----HH----HHHHHHhccc------hHHHHHHHHHc
Confidence 458899999999999999998865322 1 11112210 1 01 1122221111 01111222222
Q ss_pred hCCCceEEEecccccH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHh--------hcCCCceEeCCCCCH
Q 017364 187 LRHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIGSRIFITSRDKHLLM--------AHGVDEVYMHEHLNY 247 (373)
Q Consensus 187 l~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~--------~~~~~~~~~l~~L~~ 247 (373)
. .-+|+||+++.. +....+.........+.+||+++....... .-.....+.+++++.
T Consensus 122 -~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 -M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred -c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2 248899998642 233344333332234566777765432211 112455799999999
Q ss_pred hHHHHHHHHhhc
Q 017364 248 DEALGLFCLKAF 259 (373)
Q Consensus 248 ~ea~~l~~~~~~ 259 (373)
+|..+++...+-
T Consensus 199 ~el~~I~~~~l~ 210 (287)
T CHL00181 199 EELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999887763
No 126
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.26 E-value=2.9e-06 Score=69.41 Aligned_cols=114 Identities=14% Similarity=0.088 Sum_probs=63.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+++|.|++|+|||||++.++....+..+.+.|-. ......+... .+.-....-.+.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~laral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHHH
Confidence 78999999999999999999987665433333311 0111111110 111122233345556
Q ss_pred CCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364 188 RHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243 (373)
Q Consensus 188 ~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~ 243 (373)
..++-++++|+.. +...+..++..... ..+..+|++|++....... ++..+.+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 6677899999753 22223333322211 1125699999998766543 34555554
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.25 E-value=2.1e-05 Score=69.92 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=112.0
Q ss_pred ccCcccchhhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
.+.|.+|+.++..+..++-+.+.. +..|.|+|-.|.|||.+.+.+.+.... ..+|+.... -.....+...++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e----cft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE----CFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH----hccHHHHHHHHH
Confidence 357899999999999999876554 456799999999999999999987632 456765332 234455566666
Q ss_pred HHHh-CCCCCCC-----cchhhhHHHHHH--hhC--CCceEEEecccccHHHHH-----HHhcCCCCC-CCCcEEEEEeC
Q 017364 163 SQLL-NLPDSGV-----WNVYDGMNMIRS--RLR--HKKVLLVIDDVIELQQLE-----SLAGKHDWF-GIGSRIFITSR 226 (373)
Q Consensus 163 ~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~LlvlDdv~~~~~l~-----~l~~~~~~~-~~g~~iliTtR 226 (373)
.... ...+... .++...+..+.+ ... ++.++|||||++...+.+ .+.....-. -+...|+....
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 6652 1111111 122233333433 122 358999999997654322 221111100 12333333222
Q ss_pred C--hhhHhhcCCC--ceEeCCCCCHhHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 227 D--KHLLMAHGVD--EVYMHEHLNYDEALGLFCLKAFKSHKP---WKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 227 ~--~~~~~~~~~~--~~~~l~~L~~~ea~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
. ......++.. ..+.++.-+.+|...++.+...+.... ..-..-+..-++..|+ -+-.+..++..
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 2 2222223332 356778899999999986544221110 0011123455566777 55566655544
No 128
>PLN03073 ABC transporter F family; Provisional
Probab=98.23 E-value=1.9e-05 Score=78.72 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
++.+...+..+ .+++|+|++|+|||||++.++..+.+.
T Consensus 525 l~~vsl~i~~G----e~i~LvG~NGsGKSTLLk~L~Gll~p~ 562 (718)
T PLN03073 525 FKNLNFGIDLD----SRIAMVGPNGIGKSTILKLISGELQPS 562 (718)
T ss_pred EeccEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44444444444 789999999999999999999876543
No 129
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.2e-06 Score=75.60 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=55.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcc-----hhhhHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWN-----VYDGMNM 182 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 182 (373)
..++|.|++|+|||||++.+++.+.. +|+..+|+....+ ......++++.+...+.......... .......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999998654 5778888764322 12456666666522221111111111 1111222
Q ss_pred HHHh-hCCCceEEEecccccH
Q 017364 183 IRSR-LRHKKVLLVIDDVIEL 202 (373)
Q Consensus 183 l~~~-l~~~~~LlvlDdv~~~ 202 (373)
.... -.++++++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 2222 2578999999998643
No 130
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=0.00014 Score=65.07 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhh--hcccCHHHHHHHHHHHHhC-CC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREI--SKKSGLVFLQKQLISQLLN-LP 169 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~-~~ 169 (373)
.+.+...+..+ .-+..+.++|+.|+||+++|..++..+-......+--.. +..+ ....++.. +. .+
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~---------i~~~p 82 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL---------VSFIP 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE---------EecCC
Confidence 45555555543 224678999999999999999999875432111000000 0000 00000000 00 00
Q ss_pred C--C----CCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-
Q 017364 170 D--S----GVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH- 234 (373)
Q Consensus 170 ~--~----~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~- 234 (373)
. . ..-.+++ +..+.+.+ .++.-++|+|+++. ......++..+.....++.+|++|.+.. +...+
T Consensus 83 ~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 83 NRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 0 0 0001111 12222222 24456889999874 3344555554443345777777777653 33222
Q ss_pred CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 235 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.-...+.+.+++.+++.+.+.... .. ...+..++..++|.|+....+.
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 223578899999999999886532 11 2236678999999998665443
No 131
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.22 E-value=7.1e-06 Score=66.76 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe--echhhhcccCHHHHHHHHHHHHhCCCCC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA--NVREISKKSGLVFLQKQLISQLLNLPDS 171 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.......+.+.|-. ......+..... ...+...+......
T Consensus 17 l~~i~l~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~ 90 (166)
T cd03223 17 LKDLSFEIKPG----DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDD 90 (166)
T ss_pred eecCeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc--cccHHHHhhccCCC
Confidence 33443334445 78999999999999999999987654433222210 011112211111 01112211110112
Q ss_pred CCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364 172 GVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243 (373)
Q Consensus 172 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~ 243 (373)
..+.-....-.+.+.+-.++-++++|+.. ....+..++..+ +..+|++|++..... . +++.+.+.
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~-~d~i~~l~ 161 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-F-HDRVLDLD 161 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-h-CCEEEEEc
Confidence 22222333334555666777888999652 233343444332 356899999876543 2 55565553
No 132
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.6e-05 Score=65.98 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=98.4
Q ss_pred ccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364 88 VGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF 156 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 156 (373)
=|-++++++|.....-. -+.++=|.+|||+|.|||-||+.++++.... |+..+
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvv----------- 217 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVV----------- 217 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEec-----------
Confidence 34667788888766421 1235679999999999999999999865433 33211
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccHH----------------HHHHHhcCCCCC--CC
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIELQ----------------QLESLAGKHDWF--GI 217 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~--~~ 217 (373)
..++.....++.+ .++..+.+.- .+.+.+|.+|.++... .+-+|+..+.-| ..
T Consensus 218 -gSElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 218 -GSELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -cHHHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1123333333221 1222233322 4678999999885311 123333333211 24
Q ss_pred CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364 218 GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA 285 (373)
Q Consensus 218 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 285 (373)
+.+||..|...+.+.. -..+..++++..+.+.-.+.|+-+..+-. ..++. -.+.+++.|.|..-|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dv--d~e~la~~~~g~sGA 359 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDV--DLELLARLTEGFSGA 359 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCc--CHHHHHHhcCCCchH
Confidence 5788887765544322 23567888887777777777776653322 11111 156788888887654
No 133
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.18 E-value=2.3e-06 Score=73.29 Aligned_cols=38 Identities=39% Similarity=0.632 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+..+ .+++|.||+|+|||||.+.++.-+++
T Consensus 17 il~~ls~~i~~G----~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 17 ILDDLSFSIPKG----EITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EEecceEEecCC----cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455555555555 89999999999999999999985543
No 134
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.17 E-value=9.2e-06 Score=67.10 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcc--cCHHHHHHHHHHHH-----
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKK--SGLVFLQKQLISQL----- 165 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~----- 165 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+.-+.+.|-. +....... ........+++..+
T Consensus 15 l~~~~~~i~~G----~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 15 LDDLSLSIEAG----EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred EeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 33443334445 78999999999999999999987655433333321 11000000 00001111122221
Q ss_pred hCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364 166 LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239 (373)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~ 239 (373)
........+.-....-.+.+.+-..+-++++|+.. +...+..++..+.. ..+..+|++|++....... ++..
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~ 168 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRV 168 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEE
Confidence 11111112222223334566666778899999753 23333333333221 1156799999988765443 3444
Q ss_pred EeC
Q 017364 240 YMH 242 (373)
Q Consensus 240 ~~l 242 (373)
+.+
T Consensus 169 ~~l 171 (180)
T cd03214 169 ILL 171 (180)
T ss_pred EEE
Confidence 444
No 135
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00013 Score=66.23 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=85.7
Q ss_pred Cccc-chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cce-EEEe-echhhhc--ccCHHHHH
Q 017364 86 ELVG-LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EAS-CFLA-NVREISK--KSGLVFLQ 158 (373)
Q Consensus 86 ~~vG-R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~-~~~~-~~~~~~~--~~~~~~~~ 158 (373)
..+| -+...+.+...+..+. -++...++|+.|+|||++|+.+++.+-... ... +=.+ .+..+.. ..++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~-- 82 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL-- 82 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE--
Confidence 3556 5666778888876542 246779999999999999999998753221 000 0000 0000000 000000
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
. .........++........ ..+.+-++|+|+++. ......++..+.....++.+|++|.+.. +.
T Consensus 83 -------i-~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 83 -------V-APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred -------e-ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0 0000001112221111111 234455788998864 3345555555544455777777777653 22
Q ss_pred hhc-CCCceEeCCCCCHhHHHHHHHHh
Q 017364 232 MAH-GVDEVYMHEHLNYDEALGLFCLK 257 (373)
Q Consensus 232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~ 257 (373)
..+ .....+++.+++.++..+.+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 23457899999999998888653
No 136
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.15 E-value=2.9e-05 Score=73.63 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=91.0
Q ss_pred cCcccchhhHHHHHHH---Hh-----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364 85 KELVGLDSRLEKLRFL---IN-----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF 156 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~---l~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 156 (373)
.++.|.+...+.+... +. .+-..++-+.++|++|+|||.+|+.+++...-. ++..+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHH---------
Confidence 4566766554444432 11 122234679999999999999999999876432 22211111
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--------------HHHHHhcCCCCCCCCcEEE
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--------------QLESLAGKHDWFGIGSRIF 222 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------------~l~~l~~~~~~~~~g~~il 222 (373)
+.....+. +.......+...-...+++|++|+++..- .+..++..+.....+..||
T Consensus 295 ----l~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 ----LFGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ----hcccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11000000 11111122222224578999999986321 1222222222122344456
Q ss_pred EEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 223 ITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 223 iTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
.||.+..... ....+..+.++..+.++-.++|..+..+..... ........+++.+.|+.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCCH
Confidence 6766553221 123456788999999999999987764422110 011224566666666543
No 137
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.15 E-value=0.00021 Score=72.12 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=97.1
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..+.|.+...+.+...+.- +-..++-+.++|++|+|||+||+.+++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehH-------
Confidence 3466777766666655431 112245689999999999999999999765322 111111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--------------HHHHHHhcCCCC--CCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--------------QQLESLAGKHDW--FGI 217 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--------------~~l~~l~~~~~~--~~~ 217 (373)
.++....+. +.......+...-...+.+|+||+++.. ..+..++..+.. ...
T Consensus 522 ------~l~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 ------EILSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ------HHhhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111111111 1111222233333567899999998642 122333333321 123
Q ss_pred CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHHH
Q 017364 218 GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVLG 290 (373)
Q Consensus 218 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 290 (373)
+..||.||........ ...+..+.++..+.++-.++|+.+........ ......+++.+.|+--| |..++
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHHH
Confidence 4456666655543221 13456788999999999999976653221111 11256677788876533 44433
No 138
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.7e-06 Score=67.39 Aligned_cols=45 Identities=31% Similarity=0.527 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+..+...+.++ ..+.|.|++|+|||||.+.++.-.++.-+.+.|-
T Consensus 18 f~~L~f~l~~G----e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 18 FSDLSFTLNAG----EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred ecceeEEEcCC----CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 44555556666 6799999999999999999999888877777775
No 139
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=6.1e-06 Score=74.65 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=55.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchh-----hhHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVY-----DGMNM 182 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 182 (373)
+..+|+|++|+|||||++.+++.+.. +|+..+|+..+.+. ......+++.+...+............ ..+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999998654 68888898755432 124555555554322211111111111 11111
Q ss_pred HHHh-hCCCceEEEeccccc
Q 017364 183 IRSR-LRHKKVLLVIDDVIE 201 (373)
Q Consensus 183 l~~~-l~~~~~LlvlDdv~~ 201 (373)
-... ..++.++|++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 1221 267899999999864
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.12 E-value=6.9e-05 Score=75.62 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=92.2
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..+.|.+..++.+...+.. +-...+-+.|+|++|+|||+||+.+++.....| +.+ +.......
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~-- 251 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK-- 251 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc--
Confidence 3478999988888776631 112246789999999999999999998764332 111 11111000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCCC-CCCc
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDWF-GIGS 219 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~-~~g~ 219 (373)
..+ .........+.....+.+.+|+||+++.. .....+...+... ..+.
T Consensus 252 -----------~~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 252 -----------YYG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -----------ccc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 000 01111222233333556789999998532 1122232222111 2233
Q ss_pred EEEE-EeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 220 RIFI-TSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 220 ~ili-TtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
.+++ +|....... . ......+.++..+.++-.+++.......... .......+++.+.|..-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCCH
Confidence 3444 444332111 1 1234567888889999888887554221111 11225667778877654
No 141
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=3e-05 Score=75.51 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=41.9
Q ss_pred ccccCcccchhhHHHHHHHHhcCC---CCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGP---TDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.....++|-+..++.+..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344679999999999999887532 2246799999999999999999998654
No 142
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.11 E-value=0.00074 Score=61.85 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=112.2
Q ss_pred chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHH-HHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH----
Q 017364 90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLA-RVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ---- 164 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 164 (373)
|.+.++.|..||....+ ..|+|.||.|+||+.|+ .++...-+ . +.+.+|..+....+-..+...+..+
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~r~----~-vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKDRK----N-VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhCCC----C-EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 56778999999987765 78999999999999999 66655321 1 2222333222211111111111111
Q ss_pred -------------------HhCCCCCCCcchhhhHH--------HHHHh-------------------h---CCCceEEE
Q 017364 165 -------------------LLNLPDSGVWNVYDGMN--------MIRSR-------------------L---RHKKVLLV 195 (373)
Q Consensus 165 -------------------~~~~~~~~~~~~~~~~~--------~l~~~-------------------l---~~~~~Llv 195 (373)
+.|....-..+.+..+. .|++. + ...+-++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 12222211112111111 11110 1 12356899
Q ss_pred eccccc-----------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh----hc--CCCceEeCCCCCHhHHHHHHHHhh
Q 017364 196 IDDVIE-----------LQQLESLAGKHDWFGIGSRIFITSRDKHLLM----AH--GVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 196 lDdv~~-----------~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~----~~--~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
+||+.. ..+|...+.. .+-.+||++|-+..... .+ ...+.+.|...+++.|..+...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 999842 1234443333 23457888888764432 22 245678899999999999998887
Q ss_pred cCCCCC-------------C-----chHHHHHHHHHHHhCCCchHHHHHHHHhcC
Q 017364 259 FKSHKP-------------W-----KGYEQLSKSVVKYAGGLPLALKVLGSFLFG 295 (373)
Q Consensus 259 ~~~~~~-------------~-----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 295 (373)
...... . ..........++.+||--.-|..+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 442110 0 123445677888999999999999999865
No 143
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.10 E-value=1.4e-05 Score=62.79 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+.+.|+|++|+||||+++.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 6789999999999999999999876654233443
No 144
>PRK08116 hypothetical protein; Validated
Probab=98.10 E-value=2e-05 Score=69.22 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=27.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.-+.|+|++|+|||+||..+++.+..+...++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4588999999999999999999987654444444
No 145
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=5.7e-05 Score=73.47 Aligned_cols=39 Identities=31% Similarity=0.569 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+.
T Consensus 334 ~l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~i~G~~~p~ 372 (530)
T PRK15064 334 LFKNLNLLLEAG----ERLAIIGENGVGKTTLLRTLVGELEPD 372 (530)
T ss_pred eecCcEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444444444 789999999999999999999865443
No 146
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=1.3e-05 Score=65.65 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCC-CC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPD-SG 172 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 172 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+. ...+++... ..... ....... ......... ..
T Consensus 16 l~~~~~~i~~G----e~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~-~~~~~--~~~~~~~-i~~~~q~~~~~~ 86 (173)
T cd03230 16 LDDISLTVEKG----EIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGK-DIKKE--PEEVKRR-IGYLPEEPSLYE 86 (173)
T ss_pred eeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE-Ecccc--hHhhhcc-EEEEecCCcccc
Confidence 44444444445 789999999999999999998865443 233333211 00000 0000000 000000000 00
Q ss_pred ---------CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364 173 ---------VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD 237 (373)
Q Consensus 173 ---------~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~ 237 (373)
.+.-....-.+.+.+..++-++++|+.. +...+..++..+. ..|..+|++|++....... ++
T Consensus 87 ~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d 163 (173)
T cd03230 87 NLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CD 163 (173)
T ss_pred CCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CC
Confidence 1111122334566667788899999763 2233333333332 1256799999998766543 44
Q ss_pred ceEeC
Q 017364 238 EVYMH 242 (373)
Q Consensus 238 ~~~~l 242 (373)
..+.+
T Consensus 164 ~i~~l 168 (173)
T cd03230 164 RVAIL 168 (173)
T ss_pred EEEEE
Confidence 45444
No 147
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.09 E-value=1.7e-05 Score=62.87 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
.+++|.|++|+|||||++.++...... ...+++.......--.. .+.-....-.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHHh
Confidence 789999999999999999998876543 33344321100000000 1111122223455556
Q ss_pred CCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 189 HKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 189 ~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
.++-++++|+.. +...+.+++... +..+|++|++....... ++..+.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 677789999753 233343444332 24699999988765443 3444444
No 148
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.08 E-value=6.8e-06 Score=67.19 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc-cCHHHHHHHHHHHHhCC------CCCCCcchhhhHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK-SGLVFLQKQLISQLLNL------PDSGVWNVYDGMN 181 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 181 (373)
.+++|.|++|+|||||.+.+... .+.+.|.......... ..+.. ..+.+..+.-. .....+.-....-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~-q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFID-QLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEh-HHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 78999999999999999988631 1111111110000000 00000 02233332111 0011111112223
Q ss_pred HHHHhhCCC--ceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364 182 MIRSRLRHK--KVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243 (373)
Q Consensus 182 ~l~~~l~~~--~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~ 243 (373)
.+.+.+-.+ +-++++|+.. ....+..++..+. ..|..||++|++..... . ++.++.+.
T Consensus 97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~-~-~d~i~~l~ 162 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLS-S-ADWIIDFG 162 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEC
Confidence 344555556 7788899752 2223333333221 13667999999987653 2 56666553
No 149
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.08 E-value=4.9e-05 Score=61.20 Aligned_cols=40 Identities=30% Similarity=0.517 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++.+...+..+ ..+.|+|++|.|||||.+.++...++.
T Consensus 16 ~aL~~vs~~i~~G----ef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 16 EALRDVSFHIPKG----EFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred hhhhCceEeecCc----eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 3566666666666 789999999999999999999876554
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.4e-05 Score=70.75 Aligned_cols=173 Identities=17% Similarity=0.131 Sum_probs=92.8
Q ss_pred cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
.++=|.+..+.++..++.. |-..++=|.+|||+|+|||.||+.+++.+.-.|-.+. .
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is----A--------- 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS----A--------- 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec----c---------
Confidence 4566788888887776642 1122466899999999999999999997653321110 0
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHhc---CCCC---C
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLAG---KHDW---F 215 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~~---~~~~---~ 215 (373)
-++.+.+.++ +.+.+.+.+.+.....++++++|+++... .+.+|+. .+.. .
T Consensus 257 ----peivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 257 ----PEIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 1222222221 22333444555567789999999986311 1223332 2221 1
Q ss_pred CCCcEEEE-EeCChhhH---hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 216 GIGSRIFI-TSRDKHLL---MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 ~~g~~ili-TtR~~~~~---~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
+.+..||- |+|...+- .. -..++.|.+.-.+...-..+++..+-+-.... .+ ...+|++.+-|+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~--d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DF--DFKQLAKLTPGFV 396 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-Cc--CHHHHHhcCCCcc
Confidence 23333333 44433221 11 12456777777777777777765553222111 11 1456666666653
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00011 Score=72.20 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=74.3
Q ss_pred cCcccchhhHHHHHHHHhcC------C-CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKG------P-TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
...+|.+..++.+.+.+... + .........||.|+|||.||+.++..+-..-...+-+. . +. -.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-M---SE-----y~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-M---SE-----YM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-h---HH-----HH
Confidence 56999999999999888632 1 22467888999999999999999997754333333332 1 11 12
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCce-EEEecccc--cHHHHHHHhcCC
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKV-LLVIDDVI--ELQQLESLAGKH 212 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~--~~~~l~~l~~~~ 212 (373)
.++-.+.+.+.++.-...-. -..|-+..+.+|+ +++||+++ +++.++-|+..+
T Consensus 562 EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 23446666776665442221 2335555666765 89999996 455555554433
No 152
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=1.7e-05 Score=64.95 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC--
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS-- 171 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (373)
++.+...+.++ .+++|.|++|.|||||++.++.......+ .+++... .... .........+ .........
T Consensus 18 l~~i~~~i~~G----~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~-~~~~-~~~~~~~~~i-~~~~~~~~~~~ 89 (171)
T cd03228 18 LKDVSLTIKPG----EKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGV-DLRD-LDLESLRKNI-AYVPQDPFLFS 89 (171)
T ss_pred ccceEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCE-Ehhh-cCHHHHHhhE-EEEcCCchhcc
Confidence 44444334445 78999999999999999999987655433 3333211 0000 0000000000 000000000
Q ss_pred -C-----CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364 172 -G-----VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239 (373)
Q Consensus 172 -~-----~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~ 239 (373)
. .+.-....-.+.+.+-.++-++++|+.. +...+..++..+. .+..||++|++...... ++..
T Consensus 90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~ 164 (171)
T cd03228 90 GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRI 164 (171)
T ss_pred chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEE
Confidence 0 1111112223555566677899999753 2333444444332 24679999999877643 5555
Q ss_pred EeC
Q 017364 240 YMH 242 (373)
Q Consensus 240 ~~l 242 (373)
+.+
T Consensus 165 ~~l 167 (171)
T cd03228 165 IVL 167 (171)
T ss_pred EEE
Confidence 554
No 153
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.05 E-value=7e-06 Score=66.56 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGV 173 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+.. ..+++... .... ...... .....+.. ...
T Consensus 16 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~v~~~g~-~~~~-~~~~~~----~~~~i~~~-~qL 83 (163)
T cd03216 16 LDGVSLSVRRG----EVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGK-EVSF-ASPRDA----RRAGIAMV-YQL 83 (163)
T ss_pred EeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCE-ECCc-CCHHHH----HhcCeEEE-Eec
Confidence 33443334455 7899999999999999999998765443 33443211 1110 000000 00000000 001
Q ss_pred cchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 174 WNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 174 ~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
+.-....-.+.+.+-..+-++++|+.. +...+..++..+. ..+..+|++|++....... ++..+.+
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 112222334555566677888999753 2223333333322 2356799999998755443 3444444
No 154
>PRK08181 transposase; Validated
Probab=98.05 E-value=1.6e-05 Score=69.52 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 99 FLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 99 ~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.++..+ ..+.|+|++|+|||.||..+++........+.|+
T Consensus 101 ~~~~~~----~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 101 SWLAKG----ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred HHHhcC----ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 455544 5599999999999999999998876554445554
No 155
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00066 Score=60.99 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhh--hcccCHHHHHHHHHHHHhC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREI--SKKSGLVFLQKQLISQLLN 167 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (373)
-+.+...+..+. -.....++|+.|+||+++|..++..+-...+. .+=.. .+..+ ...+++.. ..
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~---------i~ 80 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI---------LE 80 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE---------Ec
Confidence 445555555431 24678899999999999999999876432110 00000 00000 00000000 00
Q ss_pred CCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCc
Q 017364 168 LPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDE 238 (373)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~ 238 (373)
......-.+++.. .+.+.+ .++.=++|+|+++. ......++..+....+++.+|++|.+.. +...+ .-..
T Consensus 81 p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0000011122221 122222 34555888999874 3445556655544456777888887663 33232 2245
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
.+.+.+++.++..+.+...... . ...+...+..++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~---~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSA---E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhcc---C----hHHHHHHHHHcCCCHHHH
Confidence 7899999999999998765411 1 123566788999999633
No 156
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00047 Score=62.50 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEe-echhh--hcccCHHHHHHHHHHHHhC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLA-NVREI--SKKSGLVFLQKQLISQLLN 167 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (373)
-+.+...+..+ .-...+.++|+.|+||+++|..++..+-..-+ ..+=.. .+..+ ...+++..+ ..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 44555555543 22477899999999999999999987632110 000000 00000 000000000 00
Q ss_pred CCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCc
Q 017364 168 LPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDE 238 (373)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~ 238 (373)
......-.+++.. .+.+.+ .+++=++|+|+++. ......++..+.....++.+|++|.+.. +...+ .-..
T Consensus 82 ~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000011122221 122222 34556889998874 4455666665554456777777777654 33332 2234
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 286 (373)
.+.+.+++.+++.+.+..... . ..+.+..++..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~----~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT----M---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC----C---CHHHHHHHHHHcCCCHHHH
Confidence 688999999999988865421 1 1233677899999999643
No 157
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.02 E-value=1.6e-05 Score=65.13 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=64.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC--------CcchhhhH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG--------VWNVYDGM 180 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 180 (373)
.+++|.|++|+|||||++.++....+..+. +.+... .... .........+ .......... .+.-....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~-~~~~-~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGA-DISQ-WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCE-Eccc-CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 789999999999999999999876554333 333211 0100 0001110000 0000000000 11111122
Q ss_pred HHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 181 NMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 181 ~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
-.+.+.+-.++-++++|+.. +...+..++..+. ..|..||++|++..... . +++.+.+
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 33555556677789999753 2333333333332 23667999999987664 3 5555554
No 158
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.0015 Score=58.56 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc--eEEE-eechhh--hcccCHHHHHHHHHHHHhCC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA--SCFL-ANVREI--SKKSGLVFLQKQLISQLLNL 168 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 168 (373)
-+.+...+..+ .-.+.+.++|+.|+||+++|..+++.+-..-.. .+=. ..+..+ ...+++..+ ...
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 34455555433 224679999999999999999999875322110 0000 000000 000000000 000
Q ss_pred CCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCce
Q 017364 169 PDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEV 239 (373)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~ 239 (373)
.....-.+++. +.+.+.+ .++.=++|+|+++. ......++..+....+++.+|++|.+.. +...+ .-...
T Consensus 83 ~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 00001112222 1222222 23445888998874 3445556655544456777777777653 33332 23457
Q ss_pred EeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 240 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
+.+.+++.+++.+.+..... . ....+...++|.|+....+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred EeCCCCCHHHHHHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHHh
Confidence 89999999999999865421 1 13467889999998765553
No 159
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.02 E-value=2.3e-05 Score=68.01 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=23.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~ 52 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 789999999999999999999866544
No 160
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00045 Score=65.32 Aligned_cols=188 Identities=15% Similarity=0.182 Sum_probs=107.3
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-.++||-+...+.|...+..+. -.......|+.|+||||+|+.++..+-..-... ....+-....+.+..
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKCISCKEINE 84 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhhhhhHhhhc
Confidence 3568999999999999998652 134577899999999999999998754321100 000000000011100
Q ss_pred H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364 164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKH-LL 231 (373)
Q Consensus 164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~ 231 (373)
. +..........+++ ++.+.+.. .++.=+.|+|+++ +...+..++..+.....+..+|+.|++.. +.
T Consensus 85 g~~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 0 00000000011111 11222222 3445588999996 45678888877765556777777777653 21
Q ss_pred -hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 232 -MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 232 -~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
+.......|.+..++.++-...+...+...... ...+....|.+..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence 222334578999999999998888777433222 334556666677666443
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.01 E-value=2.3e-05 Score=64.58 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=64.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH--------------HHHHHHhCCCCCCCc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK--------------QLISQLLNLPDSGVW 174 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 174 (373)
.+++|.|++|+|||||++.++.......+. +++... ..... ...... .+...+ ....+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i----~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNL----GRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhh----cccCC
Confidence 789999999999999999999876544333 333211 00000 000000 000000 01111
Q ss_pred chhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 175 NVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 175 ~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
.-....-.+.+.+-.++-++++|+.. ....+..++..+. .+..||++|++...... +++.+.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222334555566777889999763 2233333333332 25679999999877642 4555554
No 162
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=9.5e-06 Score=73.76 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=57.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcch-----hhhHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNV-----YDGMNM 182 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 182 (373)
+.++|+|++|+|||||++.+++.+... |+..+|+....+ .......+++.+...+........... ......
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 779999999999999999999987655 777888864422 124566666666443322222111111 111112
Q ss_pred HHHh-hCCCceEEEecccccH
Q 017364 183 IRSR-LRHKKVLLVIDDVIEL 202 (373)
Q Consensus 183 l~~~-l~~~~~LlvlDdv~~~ 202 (373)
.... -.+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 2678999999998643
No 163
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00012 Score=70.18 Aligned_cols=161 Identities=17% Similarity=0.090 Sum_probs=86.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+.|.|.|+.|+|||+|++++++.+..+....+-+..+...... .+..++..+ ...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~-~~e~iQk~l------------------~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS-SLEKIQKFL------------------NNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch-hHHHHHHHH------------------HHHHHHHH
Confidence 36689999999999999999999887554433333333322211 122222211 22244556
Q ss_pred CCCceEEEecccccHH---------------HHH----HHhcCCCCCCCCcEEEEEeCChhhHhh-----cCCCceEeCC
Q 017364 188 RHKKVLLVIDDVIELQ---------------QLE----SLAGKHDWFGIGSRIFITSRDKHLLMA-----HGVDEVYMHE 243 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~~---------------~l~----~l~~~~~~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~ 243 (373)
...+-++||||++... .+. ++...+...+....+|.|......... ......+.|+
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 7788999999985311 122 222222211222344555544322111 1133467889
Q ss_pred CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHH
Q 017364 244 HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVL 289 (373)
Q Consensus 244 ~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 289 (373)
++...+-.++++...-. .. .....+..+-+..+|+|+ |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s~-~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSK-NL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHHh-hh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 99888888877654422 21 112233344477788775 4444444
No 164
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.00 E-value=0.00097 Score=60.65 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 91 DSRLEKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
+...+.+.+.+.... ..+.+|+|.|+=|+||||+.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445667777776543 557899999999999999999999988776
No 165
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.99 E-value=6.3e-05 Score=63.29 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=40.4
Q ss_pred hhhHHHHHHhhCCCceEEEeccc----c--cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364 177 YDGMNMIRSRLRHKKVLLVIDDV----I--ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243 (373)
Q Consensus 177 ~~~~~~l~~~l~~~~~LlvlDdv----~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~ 243 (373)
+...-.+.+.+-..+-+|+.|+- + +...+-.++..+.. ..|..||+.||+..++.. ++..+.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 33445677778888889999953 2 33333344333321 236679999999998875 55566554
No 166
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.98 E-value=4.9e-05 Score=61.81 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
.+++|.|++|.||||+.+.++.-+.+.-
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~ 56 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDS 56 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCC
Confidence 8999999999999999999998776653
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.98 E-value=0.00044 Score=70.16 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=39.4
Q ss_pred cCcccchhhHHHHHHHHh----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 85 KELVGLDSRLEKLRFLIN----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
...+|.+...+.+..++. .+....+.+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 457888888888877553 1222336799999999999999999999876543
No 168
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.97 E-value=6.2e-05 Score=73.59 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+.
T Consensus 339 ~l~~isl~i~~G----e~~~l~G~NGsGKSTLl~~i~G~~~p~ 377 (556)
T PRK11819 339 LIDDLSFSLPPG----GIVGIIGPNGAGKSTLFKMITGQEQPD 377 (556)
T ss_pred eecceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455555555555 789999999999999999999865543
No 169
>PRK06921 hypothetical protein; Provisional
Probab=97.97 E-value=2e-05 Score=69.09 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=28.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEe
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLA 143 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 143 (373)
...+.++|++|+|||+|+..+++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 3678999999999999999999987665 44455554
No 170
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.0015 Score=59.10 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=57.8
Q ss_pred CCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364 189 HKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP 264 (373)
Q Consensus 189 ~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~ 264 (373)
++.=++|+|+++ +......++..+....+++.+|++|.+.+ +...+ .-...+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 344588889886 44455666665554456777777766643 33232 233578999999999999987642 11
Q ss_pred CchHHHHHHHHHHHhCCCchHHHHH
Q 017364 265 WKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 265 ~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
. ...+...++|.|+....+
T Consensus 207 --~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 --D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --h----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999744433
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.97 E-value=1.5e-05 Score=67.68 Aligned_cols=37 Identities=35% Similarity=0.621 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 17 l~~vs~~i~~G----~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 17 LDDISLTIKKG----EFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred ecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444444445 78999999999999999999986543
No 172
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.8e-05 Score=65.22 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhccc-CHHHHHHHHHHHHhCCCC-C
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKS-GLVFLQKQLISQLLNLPD-S 171 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 171 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+... .+.+.+... ...... ........+ ..+..... .
T Consensus 16 l~~i~~~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~-~~~~~~~~~~~~~~~i-~~~~q~~~~~ 88 (178)
T cd03229 16 LNDVSLNIEAG----EIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGE-DLTDLEDELPPLRRRI-GMVFQDFALF 88 (178)
T ss_pred EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCE-EccccchhHHHHhhcE-EEEecCCccC
Confidence 44444444455 789999999999999999999865443 233333211 010000 000000000 00000000 0
Q ss_pred C-----------CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364 172 G-----------VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH 234 (373)
Q Consensus 172 ~-----------~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~ 234 (373)
. .+.-....-.+.+.+..++-++++|+.. +...+..++..... ..+..+|++|++.......
T Consensus 89 ~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 89 PHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 0 0111122233555566777899999652 23333343333221 1256799999998766543
Q ss_pred CCCceEeC
Q 017364 235 GVDEVYMH 242 (373)
Q Consensus 235 ~~~~~~~l 242 (373)
+++++.+
T Consensus 168 -~d~i~~l 174 (178)
T cd03229 168 -ADRVVVL 174 (178)
T ss_pred -cCEEEEE
Confidence 4555544
No 173
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.96 E-value=3.8e-05 Score=65.37 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=30.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
-.++|.|++|+|||||+..+.......|..+++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 46889999999999999999999888897776664
No 174
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.95 E-value=9.7e-06 Score=72.81 Aligned_cols=37 Identities=30% Similarity=0.591 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 9 l~~vs~~i~~G----e~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 9 VDGVNFKVREG----EVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred EeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444344445 78999999999999999999986544
No 175
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.93 E-value=7e-05 Score=60.50 Aligned_cols=34 Identities=29% Similarity=0.275 Sum_probs=27.5
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
++.|+|++|+||||++..++.........++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766555566654
No 176
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.93 E-value=3.9e-05 Score=63.48 Aligned_cols=27 Identities=33% Similarity=0.646 Sum_probs=23.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++......
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 789999999999999999999866543
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00032 Score=65.13 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=76.8
Q ss_pred CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH
Q 017364 105 PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR 184 (373)
Q Consensus 105 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (373)
......|.+.|++|+|||+||..++. ...|+.+-.++. ....++.+..+ .......+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSp----e~miG~sEsaK----------------c~~i~k~F~ 592 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISP----EDMIGLSESAK----------------CAHIKKIFE 592 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeCh----HHccCccHHHH----------------HHHHHHHHH
Confidence 34467789999999999999999875 456777666531 11111111100 001111222
Q ss_pred HhhCCCceEEEecccccHHH---------------HHHHhcCCCCCCCCcEEEEEeCChhhHhhcC----CCceEeCCCC
Q 017364 185 SRLRHKKVLLVIDDVIELQQ---------------LESLAGKHDWFGIGSRIFITSRDKHLLMAHG----VDEVYMHEHL 245 (373)
Q Consensus 185 ~~l~~~~~LlvlDdv~~~~~---------------l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~----~~~~~~l~~L 245 (373)
...+..-.+||+||++..-+ +--++...+..+..--|+-||....++..++ ....+.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 23344556899999865332 3333344443344444555777777776654 2357889999
Q ss_pred CH-hHHHHHHHHhh
Q 017364 246 NY-DEALGLFCLKA 258 (373)
Q Consensus 246 ~~-~ea~~l~~~~~ 258 (373)
+. ++..+.++..-
T Consensus 673 ~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN 686 (744)
T ss_pred CchHHHHHHHHHcc
Confidence 87 77777776554
No 178
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.93 E-value=3.4e-05 Score=65.79 Aligned_cols=37 Identities=32% Similarity=0.626 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 19 LDNLNFHITKG----EMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999986543
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.92 E-value=3.5e-05 Score=64.59 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=64.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE-eechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL-ANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
..+.|.|++|+||||++..++..+.......++. .+..+.... . ...+.. ... ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~----~~~~i~----q~~-vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-S----KRSLIN----QRE-VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-C----ccceee----ecc-cCCCccCHHHHHHHHh
Confidence 4789999999999999999888776544333333 211110000 0 000000 000 0011223445567777
Q ss_pred CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364 188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM 232 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~ 232 (373)
...+-++++|++.+.+.+........ .|..++.|++..+...
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcHHH
Confidence 77788999999987776655443322 2566888999876543
No 180
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.92 E-value=4e-05 Score=64.30 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE 137 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 137 (373)
.++.+...+..| .+++|+|++|+|||||++.++.-.++..+
T Consensus 22 ~l~~VS~~i~~G----e~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 22 ALNNVSLEIERG----ETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred hhcceeEEecCC----CEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 455555555555 78999999999999999999985554433
No 181
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.92 E-value=2.8e-05 Score=66.11 Aligned_cols=38 Identities=34% Similarity=0.505 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 26 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 26 VFGPLDFHVDAG----EALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred eeecceEEECCC----CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 455555555555 78999999999999999999986543
No 182
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=1.6e-05 Score=68.00 Aligned_cols=38 Identities=26% Similarity=0.566 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 15 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 15 AVRGVSFRVRRG----EIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred eeeceeEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444555 78999999999999999999986543
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.92 E-value=0.00043 Score=60.78 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+..+ ..+.|.|++|+|||+||+.++...
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 455566666655 558899999999999999999755
No 184
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.92 E-value=3e-05 Score=65.48 Aligned_cols=37 Identities=38% Similarity=0.657 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 l~~v~~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 16 LDDLSLDLYAG----EIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444444455 78999999999999999999986543
No 185
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00016 Score=68.17 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=95.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
+.=|.+|||+|+|||-||+.+++...-.|-.+ .. -+++....++ +.......+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV---------KG--------PELlNkYVGE------SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV---------KG--------PELLNKYVGE------SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee---------cC--------HHHHHHHhhh------HHHHHHHHHHHhh
Confidence 35588999999999999999999765443211 00 1223322222 1222333344444
Q ss_pred CCCceEEEecccccH-------------HHHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCH
Q 017364 188 RHKKVLLVIDDVIEL-------------QQLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNY 247 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~ 247 (373)
...+++|.||.++.. ..+..|+..+.-. ..|..||-.|..++.... -..+..+.++..+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 678999999988531 2345555444311 235556655554443221 23456788888899
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHHHH--HhCCCchHHHHHHHHhcCCCHHHHHHHHHH
Q 017364 248 DEALGLFCLKAFKSHKPWKGYEQLSKSVVK--YAGGLPLALKVLGSFLFGRTIAEWESALQR 307 (373)
Q Consensus 248 ~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~--~~~g~Plal~~~~~~l~~~~~~~~~~~l~~ 307 (373)
+|-.++++........+. ...--.++|+. +|.|+.-| -++.+++..+...+++.+.+
T Consensus 682 ~eR~~ILK~~tkn~k~pl-~~dVdl~eia~~~~c~gftGA--DLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPL-SSDVDLDEIARNTKCEGFTGA--DLAALVREASILALRESLFE 740 (802)
T ss_pred HHHHHHHHHHhccCCCCC-CcccCHHHHhhcccccCCchh--hHHHHHHHHHHHHHHHHHhh
Confidence 999999987774322221 11112455654 34465433 33444444444444444443
No 186
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00086 Score=61.52 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=115.9
Q ss_pred cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccc-e-EEEeechhhhcccCHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA-S-CFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~-~~~~~~~~~~~~~~~~~~~ 158 (373)
.+...+||+.++..+..++... .+..+.+.|.|.+|.|||.+...++.+....... . +++ ++.. -.....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i-nc~s---l~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI-NCTS---LTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE-eecc---ccchHHHH
Confidence 4567999999999999888642 2335779999999999999999999887665444 2 333 2221 13344455
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhhCC--CceEEEecccccHHH--HHHHhcCCCCC-CCCcEEEEEeCCh-----
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRLRH--KKVLLVIDDVIELQQ--LESLAGKHDWF-GIGSRIFITSRDK----- 228 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~--l~~l~~~~~~~-~~g~~iliTtR~~----- 228 (373)
..+...+.......... .+....+...+.+ ..+|+|+|.+|.... -..+...+.|. -+++++|+.--..
T Consensus 224 ~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 55555542222221111 3334444444433 358999998864331 01111111111 1255555433211
Q ss_pred -hhHhhcC-----CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364 229 -HLLMAHG-----VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294 (373)
Q Consensus 229 -~~~~~~~-----~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 294 (373)
.++..+. .-..+..+|.+.++-.+++..+.-... .........+..++++.|.---+..+....+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1122211 224677899999999999988873322 2223334555566666666655555554443
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.91 E-value=3.3e-05 Score=65.70 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 14 ~l~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 14 VLEDVSFEVKPG----EFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred eeecceeEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 344554445555 78999999999999999999886543
No 188
>PRK10536 hypothetical protein; Provisional
Probab=97.91 E-value=6.1e-05 Score=64.54 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.6
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH-H-hccccceEE
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL-I-SHEFEASCF 141 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~ 141 (373)
..+.+|......+...+... ..+.+.|+.|+|||+||..++.. + ...|..++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 45677777777777777654 68999999999999999998885 3 334444443
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.91 E-value=0.00032 Score=56.71 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
|-+...+.+...+..+ .-+..+.++|+.|+||+++|..++..+
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456677777777655 224678999999999999999999875
No 190
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.90 E-value=0.00017 Score=66.68 Aligned_cols=37 Identities=35% Similarity=0.632 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++.+...+.++ ..++|+||+|+|||||++.+..-.
T Consensus 350 pil~~isF~l~~G----~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 350 PILKGISFALQAG----EALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cceecceeEecCC----ceEEEECCCCccHHHHHHHHHccc
Confidence 4577778788887 679999999999999999998744
No 191
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.90 E-value=2.1e-05 Score=67.35 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 16 LFGVSLTVPEG----EIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eeeeeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 8899999999999999999987543
No 192
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.90 E-value=0.00049 Score=70.33 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=39.2
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|.+..++.+...+... ++. ...+.++|++|+|||+||+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46899999999888887632 112 247889999999999999999987643
No 193
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.88 E-value=0.0013 Score=67.42 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=40.5
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|.+..++.+...+... +.. ...+.++|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 56899999999999888642 111 3568899999999999999999876543
No 194
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.87 E-value=2.5e-05 Score=67.36 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 15 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 15 VVNGVSLSVKQG----EIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred eeccceeEecCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555445555 7899999999999999999997543
No 195
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.87 E-value=2.9e-05 Score=71.83 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=42.3
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc--cccceEEE
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH--EFEASCFL 142 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~ 142 (373)
.+.++.+..++.+...|..+ +.+.++|++|+|||++|+.+++.+.. .+..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 45777788899999888866 56889999999999999999988643 23344444
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.87 E-value=0.0011 Score=59.59 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.3
Q ss_pred CCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 106 TDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.-+..++||||+|+|||.+|+.++..+.-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34688999999999999999999998654
No 197
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=0.00063 Score=68.61 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=38.2
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...+|.+..++.+...+... +.+ ...+.++||+|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56889888888888777631 112 34688999999999999999998773
No 198
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.1e-05 Score=64.32 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=37.3
Q ss_pred hHHHHHHhhCCCceEEEeccccc------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364 179 GMNMIRSRLRHKKVLLVIDDVIE------LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239 (373)
Q Consensus 179 ~~~~l~~~l~~~~~LlvlDdv~~------~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~ 239 (373)
....+.+.+--+|-+.|||..++ ...+......+. ++|+.+|+.||...++.....+..
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEE
Confidence 34455666666788999997654 333333333333 346778899999988877655543
No 199
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=4.8e-05 Score=61.26 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=64.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
.+++|.|++|.|||||++.+...+... ...+++... .... ........ .+.-... ...-....-.+.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~-~~~~-~~~~~~~~----~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGK-DIAK-LPLEELRR----RIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCE-Eccc-CCHHHHHh----ceEEEee--CCHHHHHHHHHHHHHh
Confidence 789999999999999999999876543 333443211 1100 00111100 0000000 1111222333555556
Q ss_pred CCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 189 HKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 189 ~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
..+-++++|+.. +...+..++.... ..+..++++|++....... +++.+.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 667899999763 2233333333332 1246799999998776654 4455544
No 200
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=1.5e-05 Score=73.44 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=63.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccc-----eEEEeechh-----------hhcc------cCHHHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEA-----SCFLANVRE-----------ISKK------SGLVFLQKQLISQLL 166 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~ 166 (373)
+..+++|++|+|||||.+.+++..-+-|+. ..++..... +... .....+...++..+
T Consensus 107 rRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl- 185 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL- 185 (582)
T ss_pred cccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-
Confidence 789999999999999999999833222322 111111000 0000 01111122122221
Q ss_pred CCCC-------CCCcchhhhHHHHHHhhCCCceEEEeccccc---HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364 167 NLPD-------SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE---LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH 234 (373)
Q Consensus 167 ~~~~-------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~---~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~ 234 (373)
+..+ ...+.-....-.|.+++-.++=||+||.-.+ ...+..+...+. ..+..+||.|+++.+++..
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~--t~~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQ--TWKITSLIVSHDRNFLNTV 261 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHh--hCCceEEEEeccHHHHHHH
Confidence 1111 1112222233456677777888999996543 233333333332 1135699999999877654
No 201
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.85 E-value=5e-05 Score=63.51 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+.-.+.++ .+++|.|++|.|||||++.++...
T Consensus 24 ~l~~~~~~i~~G----e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 24 LLKNVSGKAKPG----ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceecceEEEcCC----cEEEEECCCCCCHHHHHHHHhCCC
Confidence 344454445555 789999999999999999999866
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.85 E-value=1.6e-05 Score=68.08 Aligned_cols=38 Identities=32% Similarity=0.603 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 37 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 37 ALKDVSFEVPRG----ERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444455 78999999999999999999986543
No 203
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=6.6e-05 Score=63.66 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998654
No 204
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.85 E-value=8.9e-05 Score=62.70 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 18 l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 18 FSGLSFTLAAG----EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999998644
No 205
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00016 Score=68.77 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364 106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (373)
+.++-|.++||+|+|||++|+.+++...-.|-.+ . ..++++.+.+. +...+.+.+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------k--------gpEL~sk~vGe------SEr~ir~iF~k 522 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------K--------GPELFSKYVGE------SERAIREVFRK 522 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------c--------CHHHHHHhcCc------hHHHHHHHHHH
Confidence 3467899999999999999999999765443221 0 01222222221 11222223333
Q ss_pred hhCCCceEEEecccccHH-------------HHHHHhcCCCCCCCC-cEEEEEeCCh-hhHhh-----cCCCceEeCCCC
Q 017364 186 RLRHKKVLLVIDDVIELQ-------------QLESLAGKHDWFGIG-SRIFITSRDK-HLLMA-----HGVDEVYMHEHL 245 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~~~-------------~l~~l~~~~~~~~~g-~~iliTtR~~-~~~~~-----~~~~~~~~l~~L 245 (373)
.-+-.+.++.||.++... .+..++....-.... .-+|+...|+ +..+. -+.+..+.+++.
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 334567899999886422 244555444311112 2233322222 22111 125678888988
Q ss_pred CHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364 246 NYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA 285 (373)
Q Consensus 246 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 285 (373)
+.+.-.++|+.++-+-.... . -..++|++.+.|+.-|
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~-~--vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSE-D--VDLEELAQATEGYSGA 639 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCc-c--ccHHHHHHHhccCChH
Confidence 88889999988874322111 1 1256777777776544
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=0.00012 Score=61.68 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 23 l~~~s~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 23 LKDFSGVVKPG----EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeEEEEECCC----cEEEEECCCCCCHHHHHHHhcccCC
Confidence 44444444445 7899999999999999999998765
No 207
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=2e-05 Score=67.03 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 15 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 15 ALDDLSLTVEPG----EFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred eecceeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444555 78999999999999999999986543
No 208
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=7.4e-05 Score=65.36 Aligned_cols=37 Identities=27% Similarity=0.547 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 17 LEDINLTLESG----ELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999986544
No 209
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.84 E-value=2.1e-05 Score=66.35 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+.
T Consensus 16 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p~ 54 (204)
T PRK13538 16 LFSGLSFTLNAG----ELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred EEecceEEECCC----cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444445555 789999999999999999999865443
No 210
>PRK06526 transposase; Provisional
Probab=97.84 E-value=5.2e-05 Score=65.89 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=25.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
..+.|+|++|+|||+||..+..........+.|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 568999999999999999999876544333333
No 211
>PRK13409 putative ATPase RIL; Provisional
Probab=97.83 E-value=7.6e-05 Score=73.05 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=69.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc------cCHHHH-------------HHHHHHHH----
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK------SGLVFL-------------QKQLISQL---- 165 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~------~~~~~~-------------~~~~~~~~---- 165 (373)
.+++|.|++|+|||||++.++....+.-+.+.|-.......+. ...... ..+++..+
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~ 445 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER 445 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH
Confidence 7899999999999999999998765443333221111101110 111111 11111111
Q ss_pred -hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCc
Q 017364 166 -LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDE 238 (373)
Q Consensus 166 -~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~ 238 (373)
........+.-....-.+.+.+...+-+++||+. .+...+..++..+.. ..|..||++||+...+... ++.
T Consensus 446 ~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~-aDr 523 (590)
T PRK13409 446 LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI-SDR 523 (590)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CCE
Confidence 0011111111222233455666777889999964 233334444433311 1255699999998876654 455
Q ss_pred eEeCCC
Q 017364 239 VYMHEH 244 (373)
Q Consensus 239 ~~~l~~ 244 (373)
++.+.+
T Consensus 524 vivl~~ 529 (590)
T PRK13409 524 LMVFEG 529 (590)
T ss_pred EEEEcC
Confidence 666553
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.83 E-value=5.8e-05 Score=68.01 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=28.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
..+.++|++|+|||+||..+++.+......++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66999999999999999999998766555555554
No 213
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.83 E-value=2.5e-05 Score=66.76 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 17 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 17 AVDDLSLNVYKG----EIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred eecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345555445555 78999999999999999999986543
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.83 E-value=0.00042 Score=58.01 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=40.7
Q ss_pred ccCcccchhhHHHHHHHHh---cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364 84 LKELVGLDSRLEKLRFLIN---KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA 138 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 138 (373)
-..++|.+...+.+..... .+ -...-|.+||..|+|||+|++.+.+.+...+..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3568998887777665433 22 123568999999999999999999998877655
No 215
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.83 E-value=0.001 Score=59.68 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=34.4
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchHH
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPW-KGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal 286 (373)
.+++++++.+|+..++....-.+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763332221 233455677777789999765
No 216
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.83 E-value=2.3e-05 Score=70.46 Aligned_cols=39 Identities=31% Similarity=0.577 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ .+++|.|++|.|||||++.++..+.+.
T Consensus 22 ~l~~vsl~i~~G----ei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 22 VVDGLSFHVQRG----ECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred EEecceEEEeCC----cEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 455665555555 789999999999999999999865443
No 217
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00018 Score=59.34 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=29.9
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+|--..++.+.-.+..+ .+++|+||+|+|||||.+.+-.
T Consensus 11 ~fg~~~VLkgi~l~v~~G----evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 11 SFGDKEVLKGISLSVEKG----EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EeCCeEEecCcceeEcCC----CEEEEECCCCCCHHHHHHHHHC
Confidence 344444566666555566 8899999999999999998754
No 218
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.83 E-value=4.6e-05 Score=66.44 Aligned_cols=26 Identities=38% Similarity=0.708 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999986544
No 219
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.83 E-value=2.6e-05 Score=68.17 Aligned_cols=38 Identities=32% Similarity=0.550 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 27 il~~isl~i~~G----e~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 27 VLNQLDLHIPAG----QFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 455555445555 78999999999999999999986543
No 220
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.6e-05 Score=65.80 Aligned_cols=40 Identities=33% Similarity=0.524 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...++.+.-.+..+ ..|+|.|++|+|||||.+.++.-..+
T Consensus 16 ~~vl~~i~L~v~~G----EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 16 VEVLEDINLSVEKG----EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred eEEeccceeEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34455555555555 78999999999999999999975443
No 221
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.82 E-value=3.8e-05 Score=68.38 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
...++.+.-.+.++ .++++.|++|+|||||.+.++..+++.
T Consensus 18 ~~~l~~vs~~i~~G----ei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 18 KTALDGVSFEVEPG----EIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred CEEEeceeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 44566666666666 899999999999999999999876654
No 222
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.82 E-value=0.00016 Score=70.74 Aligned_cols=39 Identities=28% Similarity=0.553 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+..+ .+++|.|++|+|||||++.++....+.
T Consensus 337 ~l~~isl~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~p~ 375 (552)
T TIGR03719 337 LIDDLSFKLPPG----GIVGVIGPNGAGKSTLFRMITGQEQPD 375 (552)
T ss_pred eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 455555444555 789999999999999999999865443
No 223
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.82 E-value=0.00014 Score=62.28 Aligned_cols=25 Identities=44% Similarity=0.777 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998644
No 224
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.81 E-value=0.0001 Score=63.24 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+..
T Consensus 24 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 24 LKNVSLTVNAG----ECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EecceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444555 78999999999999999999986544
No 225
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=5.1e-05 Score=64.96 Aligned_cols=136 Identities=19% Similarity=0.207 Sum_probs=76.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhhhcccCHHHHHHHHHHHHh-----
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREISKKSGLVFLQKQLISQLL----- 166 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 166 (373)
.++.+...+..+ .+++|+|.+|+|||||++.+..-..+..+.+.|-.. ..... .........+++....
T Consensus 28 avd~Vsf~i~~g----e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~ 102 (268)
T COG4608 28 AVDGVSFSIKEG----ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEF 102 (268)
T ss_pred EecceeEEEcCC----CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHH
Confidence 455555555556 789999999999999999999977766666555321 11111 1112222333333321
Q ss_pred -CCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364 167 -NLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL------QQLESLAGKHDWFGIGSRIFITSRDKHLLMAH 234 (373)
Q Consensus 167 -~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~ 234 (373)
..-+.....-....-.+.+.+.-++-++|.|+..+. .++-.++..+.. ..|...++.|++-.+...+
T Consensus 103 ~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 111111222222233466777888999999975321 222222222211 1256789999998877665
No 226
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=7.9e-05 Score=64.38 Aligned_cols=37 Identities=30% Similarity=0.591 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 16 LKGVDLDVRRG----EILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999976543
No 227
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.81 E-value=0.00015 Score=61.75 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 17 l~~~sl~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 17 LDGINISISAG----EFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444344445 78999999999999999999986543
No 228
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=5e-05 Score=75.27 Aligned_cols=40 Identities=33% Similarity=0.516 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++.+...+.++ .+++|+|++|+|||||++.++....+.
T Consensus 15 ~~l~~vs~~i~~G----e~v~LvG~NGsGKSTLLkiL~G~~~pd 54 (638)
T PRK10636 15 VLLDNATATINPG----QKVGLVGKNGCGKSTLLALLKNEISAD 54 (638)
T ss_pred eeecCcEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3455555555555 789999999999999999999865543
No 229
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.80 E-value=5.6e-05 Score=73.90 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+.++ .+++|+|++|+|||||++.++..+.+.
T Consensus 22 il~~vs~~i~~G----e~~~iiG~NGsGKSTLlk~i~G~~~p~ 60 (556)
T PRK11819 22 ILKDISLSFFPG----AKIGVLGLNGAGKSTLLRIMAGVDKEF 60 (556)
T ss_pred eeeCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455555555555 789999999999999999999876543
No 230
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00011 Score=70.76 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=42.8
Q ss_pred cCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364 85 KELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA 138 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 138 (373)
.+-.|-++..++|...|.- ..-..++++++||+|+|||+|++.++..+...|-.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 4577888888888887752 22335899999999999999999999988766543
No 231
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.80 E-value=0.00025 Score=59.79 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ .+++|.|++|.|||||++.++......
T Consensus 20 il~~~s~~i~~G----~~~~i~G~nG~GKSTLl~~i~G~~~~~ 58 (204)
T cd03250 20 TLKDINLEVPKG----ELVAIVGPVGSGKSSLLSALLGELEKL 58 (204)
T ss_pred eeeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 344555455555 789999999999999999999866544
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=97.80 E-value=7.7e-05 Score=65.20 Aligned_cols=34 Identities=26% Similarity=0.157 Sum_probs=25.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+.|+|++|+|||+|+..++.........+.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5688999999999999999988755443333343
No 233
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.80 E-value=8.5e-05 Score=63.19 Aligned_cols=37 Identities=32% Similarity=0.607 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 il~~is~~i~~G----~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 17 ALHDVSLHIRKG----EFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred eecceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345554445555 7899999999999999999987544
No 234
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.80 E-value=0.00091 Score=55.75 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=40.6
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.-.+.||-++.++++.-....+. .+-+.|.||+|+||||-+..+++.+-
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHHh
Confidence 33569999999999988777664 48899999999999998888887653
No 235
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.79 E-value=2.7e-05 Score=69.96 Aligned_cols=38 Identities=37% Similarity=0.681 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 ~l~~vsl~i~~G----e~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 19 VVNDLSFTIARG----ECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred EEcceeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455555555556 78999999999999999999986543
No 236
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.79 E-value=4.6e-05 Score=65.61 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++..+.
T Consensus 15 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 15 ILRGVSLEVPKG----EVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EecceeeEECCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555555555 7899999999999999999997554
No 237
>PRK10908 cell division protein FtsE; Provisional
Probab=97.79 E-value=7.2e-05 Score=64.05 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 18 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 18 LQGVTFHMRPG----EMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999997554
No 238
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=6e-05 Score=64.43 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 20 l~~vs~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 20 LEDISLSVEEG----EFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EeceeEEEeCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999986543
No 239
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.79 E-value=3.2e-05 Score=66.89 Aligned_cols=37 Identities=35% Similarity=0.671 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 36 il~~vs~~i~~G----e~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 36 ALKGISFTIEKG----EIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344454444455 7899999999999999999997554
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.78 E-value=3.2e-05 Score=63.45 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=26.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.-+.|+|++|+|||.||..+++.+......+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 56999999999999999999988765555555553
No 241
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.77 E-value=7.4e-05 Score=63.76 Aligned_cols=37 Identities=30% Similarity=0.586 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 20 il~~~sl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 20 AVDGVSFTVKPG----EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred eecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344444444455 7899999999999999999997544
No 242
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.77 E-value=4.8e-05 Score=75.50 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+.++ .+++|+|++|+|||||++.++....+.
T Consensus 18 il~~is~~i~~G----e~v~LvG~NGsGKSTLLriiaG~~~p~ 56 (635)
T PRK11147 18 LLDNAELHIEDN----ERVCLVGRNGAGKSTLMKILNGEVLLD 56 (635)
T ss_pred eEeCcEEEECCC----CEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 455555555555 789999999999999999999866544
No 243
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.00018 Score=60.04 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..
T Consensus 23 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 23 LNNISGYVKPG----TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEccEEEEeCC----cEEEEECCCCCCHHHHHHHHhCC
Confidence 44444344445 78999999999999999999974
No 244
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=0.00034 Score=59.24 Aligned_cols=173 Identities=15% Similarity=0.152 Sum_probs=95.1
Q ss_pred cCcccchhhHHH---HHHHHhcC----CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364 85 KELVGLDSRLEK---LRFLINKG----PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 85 ~~~vGR~~~~~~---l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
+..||.++.... |...|... .-.++.|..+||+|.|||.+|+.+++..+.. +.....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp----~l~vka------------ 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP----LLLVKA------------ 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc----eEEech------------
Confidence 468887765433 34445432 2226889999999999999999999865432 111111
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc--------------HHHHHHHhcCCCC--CCCCcEE
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--------------LQQLESLAGKHDW--FGIGSRI 221 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--------------~~~l~~l~~~~~~--~~~g~~i 221 (373)
.+++....+. ......+...+.-+..++++.+|.++. .+....++..+.- .+.|...
T Consensus 185 -t~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 -TELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred -HHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1111111110 111112222333356789999998753 2234455544421 2346656
Q ss_pred EEEeCChhhHhh---cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 222 FITSRDKHLLMA---HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 222 liTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
|..|.+...+.. ......++..-.+.+|-..++...+-.-..+. ..-.+.++++++|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 666665554432 12334567777788999988887763322221 112566777777753
No 245
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=0.00018 Score=56.85 Aligned_cols=34 Identities=38% Similarity=0.499 Sum_probs=28.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..++|+||+|+|||||.+.++.-+....+...|-
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~ 63 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE 63 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 5699999999999999999999887776666554
No 246
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=7.6e-05 Score=64.43 Aligned_cols=38 Identities=34% Similarity=0.585 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+..
T Consensus 20 il~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 20 ALKDVSLSVPKG----EIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445555 78999999999999999999976543
No 247
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.76 E-value=6.4e-05 Score=65.34 Aligned_cols=37 Identities=35% Similarity=0.633 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 il~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNINPG----EFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344454445555 7899999999999999999987554
No 248
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=6e-05 Score=65.48 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 17 ALFDITLDCPQG----ETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred eEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444444455 7899999999999999999997654
No 249
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00054 Score=62.41 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=27.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
++++++|+|++|+||||++..++..+......+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 357999999999999999999998776543334443
No 250
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.74 E-value=0.00011 Score=62.51 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 16 l~~~s~~i~~G----~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 16 LKGIDLTVKKG----EVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred ecCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444445 78999999999999999999986543
No 251
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.74 E-value=5.3e-05 Score=64.42 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 16 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 16 LDDLNLDIADG----EFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999998654
No 252
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.74 E-value=0.00017 Score=61.00 Aligned_cols=36 Identities=33% Similarity=0.669 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 16 l~~~~~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 16 LDDISLHVKKG----EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 44444344445 7899999999999999999997543
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.74 E-value=0.00015 Score=62.20 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+...|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444433333589999999999999999999987765556677765
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.74 E-value=7.4e-05 Score=62.83 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 15 ~l~~is~~i~~G----e~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 15 ILKGVNLTIKKG----EVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred eeeccceEECCC----cEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555455555 789999999999999999998863
No 255
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00054 Score=62.28 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+|-+.....+..+........+.+.++||+|+||||+|..+++.+-.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 566666677777766643333456999999999999999999998753
No 256
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.74 E-value=0.00015 Score=61.54 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++..+..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999986543
No 257
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.74 E-value=6.4e-05 Score=65.64 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 18 VLHGIDLEVKPG----EVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345555445555 7899999999999999999997544
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00023 Score=61.96 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=27.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.-++++|++|+|||.||..+.+.+......+.|+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 5699999999999999999999988443444444
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.73 E-value=6.4e-05 Score=66.01 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
+.+.-.+.++ .+++|.|++|+|||||++.++..+.+.
T Consensus 41 ~~is~~i~~G----e~~~liG~NGsGKSTLlk~L~Gl~~p~ 77 (264)
T PRK13546 41 DDISLKAYEG----DVIGLVGINGSGKSTLSNIIGGSLSPT 77 (264)
T ss_pred eeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 3333334445 789999999999999999999876543
No 260
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=0.00013 Score=62.94 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 18 l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 18 LRDISLDIPAG----ETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhccccC
Confidence 44444444455 78999999999999999999976543
No 261
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.73 E-value=0.00022 Score=61.07 Aligned_cols=36 Identities=22% Similarity=0.549 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 16 VNNISLTVPKN----SVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33343334445 7899999999999999999998654
No 262
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.72 E-value=3.3e-05 Score=70.28 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++.+...+.++ .+++|.|++|.|||||++.++..+.+
T Consensus 55 ~~l~~is~~i~~G----ei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 55 AVVNGLSFTVASG----ECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred EEEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3455665555555 88999999999999999999986543
No 263
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.72 E-value=0.0014 Score=57.65 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=96.4
Q ss_pred cCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc--ccCHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK--KSGLVFLQKQ 160 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~ 160 (373)
..++|-.++-+.+..++... -+...-|.|+||.|.|||+|......+ .+.+.-.+........-+ ...+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 45899888888888887631 112266899999999999999888776 334444444433322111 2233344444
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhC------CCceEEEecccccHH------HHHHHhcCC-CCCCCCcEEEEEeCC
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLR------HKKVLLVIDDVIELQ------QLESLAGKH-DWFGIGSRIFITSRD 227 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~~------~l~~l~~~~-~~~~~g~~iliTtR~ 227 (373)
+..++... .....+..+....+...+. +.++++|+|++|-.. .+-.+..-. ....|-+-|-+|||-
T Consensus 103 l~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 103 LALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 43332211 1112233333344444442 346899999875311 122222211 112345666788886
Q ss_pred hh-------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364 228 KH-------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF 259 (373)
Q Consensus 228 ~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~ 259 (373)
.. +-.......++-+++++.++-..+++....
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 52 222333334667788999999999988773
No 264
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.72 E-value=0.00011 Score=64.29 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=61.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC-------CcchhhhH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG-------VWNVYDGM 180 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 180 (373)
...++|.|++|+|||||++.++..+....+. +++.. ..+........+. ......+... ...... .
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~-i~~~g-~~v~~~d~~~ei~----~~~~~~~q~~~~~r~~v~~~~~k-~ 183 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTGISQ-LGLRG-KKVGIVDERSEIA----GCVNGVPQHDVGIRTDVLDGCPK-A 183 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCCCce-EEECC-EEeecchhHHHHH----HHhcccccccccccccccccchH-H
Confidence 4679999999999999999999887654322 23211 0010000111111 1111111111 011111 1
Q ss_pred HHHHHhh-CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 181 NMIRSRL-RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 181 ~~l~~~l-~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
..+...+ ...+-++++|++...+.+..+..... .|..+|+||++..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 1122222 25788999999987776666655543 37779999998765
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00087 Score=60.52 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=47.8
Q ss_pred CceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh-hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364 190 KKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHLLM-AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPW 265 (373)
Q Consensus 190 ~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~-~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 265 (373)
++-++|+|+++. ......++..+.....++.+|++|++..... .+ .....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 334556687753 2333333322222223566888888765322 21 123578899999999998886542 11
Q ss_pred chHHHHHHHHHHHhCCCchHH
Q 017364 266 KGYEQLSKSVVKYAGGLPLAL 286 (373)
Q Consensus 266 ~~~~~~~~~i~~~~~g~Plal 286 (373)
.. . ..+..++|.|+..
T Consensus 188 ~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred cH-H----HHHHHhCCChhhh
Confidence 11 1 1135688988643
No 266
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.71 E-value=0.0013 Score=59.65 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=37.2
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..++|+...++.+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899998888888777643333366899999999999999988753
No 267
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00057 Score=63.35 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=33.1
Q ss_pred HHHHhhCCCceEEEeccc---ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364 182 MIRSRLRHKKVLLVIDDV---IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH 234 (373)
Q Consensus 182 ~l~~~l~~~~~LlvlDdv---~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~ 234 (373)
.+......+|.|||||.- -+.+.++.+...+..+. |. ||+.|++..+....
T Consensus 492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~-GG-Vv~VSHd~~fi~~~ 545 (582)
T KOG0062|consen 492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN-GG-VVLVSHDEEFISSL 545 (582)
T ss_pred HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC-Cc-EEEEECcHHHHhhc
Confidence 344455678999999954 34455555555444333 44 88889999886654
No 268
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00014 Score=62.99 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 20 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 20 ALHEVSLHINQG----EIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred eeeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHcCCC
Confidence 455555555555 789999999999999999998754
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.71 E-value=0.0032 Score=60.68 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=112.6
Q ss_pred cccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHh--------ccccceEEEeechhhhcc
Q 017364 83 TLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLIS--------HEFEASCFLANVREISKK 151 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------~~f~~~~~~~~~~~~~~~ 151 (373)
.+..+-+|+.+..+|...+.. .......+.|.|.+|+|||..+..|...+. +.|..+..- .-.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN-----gm~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN-----GLRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc-----ceee
Confidence 556789999999999888763 212245899999999999999999998654 123332211 1122
Q ss_pred cCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC-----CCceEEEecccccHH-----HHHHHhcCCCCC-CCCcE
Q 017364 152 SGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR-----HKKVLLVIDDVIELQ-----QLESLAGKHDWF-GIGSR 220 (373)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~-----~l~~l~~~~~~~-~~g~~ 220 (373)
.....+...++..+.+... .....+..+..++. .++.++++|+++..- .+-.+ +.|. .++++
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sK 541 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSK 541 (767)
T ss_pred cCHHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCc
Confidence 3455566666666544433 33344555555543 456899999886432 33333 2222 24666
Q ss_pred EEEEeC-Ch-h---------hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHH
Q 017364 221 IFITSR-DK-H---------LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKV 288 (373)
Q Consensus 221 iliTtR-~~-~---------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~ 288 (373)
++|.+= +- + +...+ ....+.+.|.+..+-.+.+..++.+.. ......+=++++++...|-.-.|+..
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 655432 11 1 11122 234577889999999888877764331 11222333445555555555555544
Q ss_pred HH
Q 017364 289 LG 290 (373)
Q Consensus 289 ~~ 290 (373)
.-
T Consensus 621 c~ 622 (767)
T KOG1514|consen 621 CR 622 (767)
T ss_pred HH
Confidence 43
No 270
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.70 E-value=0.0012 Score=66.25 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=38.6
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|-+..++.+...+... ..+ ...+.++||+|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999888888887631 112 35689999999999999999988773
No 271
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.70 E-value=0.00015 Score=65.12 Aligned_cols=37 Identities=30% Similarity=0.642 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|.|||||++.++....+
T Consensus 18 l~~is~~i~~G----ei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 18 LDEVSFEAQKG----RIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred EEEeEEEEeCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444445 78999999999999999999976543
No 272
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.00013 Score=62.01 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=21.6
Q ss_pred EEEEeccCCcchhHHHHHHHHHHh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+++|.|++|+|||||++.++....
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999997543
No 273
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.70 E-value=0.00018 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 29 ~l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 29 VLQDVSFTLHPG----EVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 455555445555 78999999999999999999986543
No 274
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.70 E-value=4.9e-05 Score=59.83 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEeccCCcchhHHHHHHHHHH
Q 017364 111 IGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 111 v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 275
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.69 E-value=0.00019 Score=61.18 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 20 l~~~s~~i~~G----~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 20 LKGVSLSIEKG----EFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EeeeEEEEcCC----CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 44444444455 78999999999999999999976543
No 276
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.69 E-value=0.0014 Score=59.46 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=34.1
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++|+...++.+...+..-......|.|+|++|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777776665433333568999999999999999887643
No 277
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00012 Score=64.61 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 40 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 40 VNDVSLDVREG----EIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444445555 78999999999999999999986543
No 278
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.69 E-value=0.00041 Score=58.60 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 14 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 14 LDDLNLTIEKG----KMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred EeceEEEEeCC----cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34444344445 78999999999999999999986543
No 279
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.68 E-value=0.00068 Score=67.32 Aligned_cols=39 Identities=33% Similarity=0.530 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..|+|+|.+|+|||||++.+.+-..+.
T Consensus 488 vL~~isL~I~~G----e~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 488 VLEDLSLEIPPG----EKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred hhhceeEEeCCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 455555555566 789999999999999999999865543
No 280
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.68 E-value=0.00013 Score=62.89 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999986554
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.68 E-value=0.00031 Score=60.68 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+-..|..+-....++.|.|++|+|||+|+.+++.........++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 334444434334588999999999999999999776444455666664
No 282
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00016 Score=62.83 Aligned_cols=38 Identities=29% Similarity=0.565 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 18 ~l~~~sl~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 18 VVEDVSLTVNSG----EIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344455445555 78999999999999999999986543
No 283
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.67 E-value=0.012 Score=57.45 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=39.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...++|....++++...+..-......|.|+|++|+|||++|+.+.....
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 35799999998888887764333335688999999999999999987543
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.00014 Score=62.01 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+...|.-+-....++.|+|++|+|||||+.+++.........++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444433333589999999999999999999988765555666664
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=0.00033 Score=58.40 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=26.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+++++++|++|+||||.+..++.....+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 478999999999999988888887665544444443
No 286
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.66 E-value=8.8e-05 Score=62.41 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 16 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 16 FSGLSFTLAAG----EALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred eccceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999987544
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.66 E-value=0.00014 Score=71.07 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+...+..+ .+++|+|++|+|||||++.++....+.
T Consensus 20 il~~is~~i~~G----e~~~liG~NGsGKSTLl~~i~G~~~p~ 58 (552)
T TIGR03719 20 ILKDISLSFFPG----AKIGVLGLNGAGKSTLLRIMAGVDKEF 58 (552)
T ss_pred eecCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455555555555 789999999999999999999876543
No 288
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=7.6e-05 Score=65.96 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 16 VLKGLNLDFSLS----PVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 455555445555 78999999999999999999875543
No 289
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.66 E-value=0.00027 Score=63.99 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG 172 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
..++.+.+.+-. ..+.++|+|++|+|||||++.+++.+....+ ..+++..+. ........+.+.+...+.......
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCC
Confidence 445666666432 2267799999999999999999998765443 322332221 223445556666555433221111
Q ss_pred Ccch----h-hhHHHHHHhh-CCCceEEEeccccc
Q 017364 173 VWNV----Y-DGMNMIRSRL-RHKKVLLVIDDVIE 201 (373)
Q Consensus 173 ~~~~----~-~~~~~l~~~l-~~~~~LlvlDdv~~ 201 (373)
.... . ........+. .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 0 1111111111 68899999999854
No 290
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00014 Score=64.37 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 20 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (274)
T PRK13647 20 ALKGLSLSIPEG----SKTALLGPNGAGKSTLLLHLNGIYLP 57 (274)
T ss_pred eeeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 344454445555 78999999999999999999976543
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00031 Score=62.13 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 23 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 23 LRDASFTVPGG----SIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999997644
No 292
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.65 E-value=0.00011 Score=64.51 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 16 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 16 IVDGVDVTAPPG----SLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 455555455555 7899999999999999999997554
No 293
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.65 E-value=0.00033 Score=62.62 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=36.8
Q ss_pred cchhhHHHHHHHHhcCC--CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 89 GLDSRLEKLRFLINKGP--TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+|....+....++.... ...+-+.|+|+.|+|||.||..+++.+......+.++.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44444554455554321 12356899999999999999999999875544455543
No 294
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=0.00015 Score=60.98 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 il~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 16 LLQQISFHLPAG----GLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 355555445555 78999999999999999999886543
No 295
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00012 Score=63.34 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 17 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 17 ALDDVSLDIPSG----ELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eeeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444444555 7899999999999999999998654
No 296
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00041 Score=61.21 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 28 il~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 28 AVKNVFCDIPRG----KVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEcceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence 455555455555 7899999999999999999987643
No 297
>PTZ00494 tuzin-like protein; Provisional
Probab=97.65 E-value=0.014 Score=53.87 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=88.4
Q ss_pred ccccCcccchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
..+..+|.|+.+-..+.+.|.. +...++++++.|..|+|||+|++.....- .-..+++. + ......++.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-V------Rg~EDtLrs 437 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-V------GGTEDTLRS 437 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-e------cCCcchHHH
Confidence 5667899999998888888874 34457999999999999999999876532 22344443 2 222233444
Q ss_pred HHHHHhCCCCCCCcchhhhHH----HHHHhhCCCceEEEec--ccccHHH-H---HHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 161 LISQLLNLPDSGVWNVYDGMN----MIRSRLRHKKVLLVID--DVIELQQ-L---ESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~LlvlD--dv~~~~~-l---~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
+...+.-...+.-.+.-+.+. .-+....++.-+||+- +=.+..- . -.+... ..-|.|++----+.+
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplESL 513 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHhhh
Confidence 454433222222222222221 1222234555555553 2222111 1 111111 124556654333322
Q ss_pred Hh---hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 231 LM---AHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 231 ~~---~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
-. .+.--..|-+++++.++|.++.+...
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 11223578899999999999876554
No 298
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00016 Score=63.17 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 18 ~l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 18 VLDGVNLEIPDN----TITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeecceeEEcCC----CEEEEECCCCCCHHHHHHHHhccCC
Confidence 345555555555 7899999999999999999998754
No 299
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00013 Score=71.04 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|+|++|+|||||++.++..+.+
T Consensus 16 il~~vsl~i~~G----e~~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 16 LFENISVKFGGG----NRYGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred eEeCCEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444445555 78999999999999999999986654
No 300
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00083 Score=65.20 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=75.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
.=|.++||+|.|||-||++++.+..-.| +. + . . -+++....++ +.....+.+.+.-.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V---K-G-------PELLNMYVGq------SE~NVR~VFerAR~ 762 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V---K-G-------PELLNMYVGQ------SEENVREVFERARS 762 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e---c-C-------HHHHHHHhcc------hHHHHHHHHHHhhc
Confidence 4588999999999999999998654332 21 1 0 0 1223333332 12223333444445
Q ss_pred CCceEEEecccccHH---------------HHHHHhcCC----CCCCCCcEEEEEeCChhhHhh-----cCCCceEeCCC
Q 017364 189 HKKVLLVIDDVIELQ---------------QLESLAGKH----DWFGIGSRIFITSRDKHLLMA-----HGVDEVYMHEH 244 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~---------------~l~~l~~~~----~~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~ 244 (373)
-.+++|.||++++.. ...+++..+ .....+.-||-.|..+++++. -+.+..+.+++
T Consensus 763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecC
Confidence 689999999987521 122232222 212234434444443433222 23456677887
Q ss_pred CCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 017364 245 LNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG 281 (373)
Q Consensus 245 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 281 (373)
-+.+++..=..+..-+....+++. ...+|+++|.-
T Consensus 843 ~~d~esk~~vL~AlTrkFkLdedV--dL~eiAk~cp~ 877 (953)
T KOG0736|consen 843 NEDAESKLRVLEALTRKFKLDEDV--DLVEIAKKCPP 877 (953)
T ss_pred CccHHHHHHHHHHHHHHccCCCCc--CHHHHHhhCCc
Confidence 777776654333321211111111 15667777754
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.64 E-value=0.00018 Score=60.85 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 23 ~l~~isl~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~ 60 (207)
T cd03369 23 VLKNVSFKVKAG----EKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred cccCceEEECCC----CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 344444444445 78999999999999999999876543
No 302
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.64 E-value=0.0021 Score=64.86 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=40.7
Q ss_pred cCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 85 KELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
...+|.+...+.|..++.. +.....+++++|++|+||||+++.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999888888877762 112346899999999999999999998766443
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00035 Score=66.32 Aligned_cols=38 Identities=29% Similarity=0.651 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+.
T Consensus 40 L~nVSfsI~~G----EivgIiGpNGSGKSTLLkiLaGLl~P~ 77 (549)
T PRK13545 40 LNNISFEVPEG----EIVGIIGLNGSGKSTLSNLIAGVTMPN 77 (549)
T ss_pred EeeeEEEEeCC----CEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 44444444555 789999999999999999999876543
No 304
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00016 Score=60.81 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
...+..|.....++ ..-+|+|++|+|||||++.+....
T Consensus 44 k~iL~~isW~V~~g----e~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 44 KKILGDLSWQVNPG----EHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred EeeccccceeecCC----CcEEEECCCCCCHHHHHHHHhccc
Confidence 34577888777777 447899999999999999998753
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.64 E-value=0.00082 Score=56.21 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+.+...+.++. ++++|.|++|+||||+++.+...+......+++.
T Consensus 6 Q~~a~~~~l~~~~---~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 6 QREAVRAILTSGD---RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp HHHHHHHHHHCTC---SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHhcCC---eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3445555555432 7888999999999999999988777654344443
No 306
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.63 E-value=7.6e-05 Score=73.65 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.+.....+
T Consensus 350 iL~~inl~i~~G----~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 350 GVEDVSFEAKPG----QTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred eecceeEEECCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 455555555555 77999999999999999999976554
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.63 E-value=0.00013 Score=70.28 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 18 il~~vsl~i~~G----e~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 18 TLQLPSLTLNAG----DSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred ecccceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455555555555 78999999999999999999986544
No 308
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.63 E-value=0.00049 Score=70.17 Aligned_cols=49 Identities=27% Similarity=0.450 Sum_probs=38.8
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|.+..++.+...+... +.+ ..++.++||+|+|||.||+.++..+-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999888877521 112 34789999999999999999988764
No 309
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00041 Score=59.02 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++..+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999997654
No 310
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00057 Score=67.42 Aligned_cols=152 Identities=13% Similarity=0.182 Sum_probs=87.8
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-cc-----ceEEEeechhhhcccCHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FE-----ASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~~ 157 (373)
-+..+||++|++++.+.|....++. -.++|.+|+|||+++.-++.++... -+ ..++-.+..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g----------- 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG----------- 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-----------
Confidence 3569999999999999998654433 3469999999999999999987533 11 111111110
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH-----------HHHHHHhcCCCCCCCC-cEEE-E
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIG-SRIF-I 223 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g-~~il-i 223 (373)
.+ .....-..++++.+..+.+.+ ...+++|++|.++.. +.-.-+.+.+. .| .++| .
T Consensus 236 ------~L-vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---RGeL~~IGA 305 (786)
T COG0542 236 ------SL-VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RGELRCIGA 305 (786)
T ss_pred ------HH-hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---cCCeEEEEe
Confidence 00 011111234444444443333 344899999987532 11222233332 23 3344 5
Q ss_pred EeCChhhHh------hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 224 TSRDKHLLM------AHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 224 TtR~~~~~~------~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
||-++.--. -......+.+...+.+++...++...
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 555543210 01245678899999999999886543
No 311
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00072 Score=55.71 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=32.4
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
..+.|-...++.+.-.+..+ .+.++.||+|+||||+.+.+-.
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~----~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKN----KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEECchhhhccCceeccCC----ceEEEECCCCcCHHHHHHHHHh
Confidence 45777666677766555544 8999999999999999988654
No 312
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.63 E-value=0.00018 Score=62.44 Aligned_cols=36 Identities=33% Similarity=0.557 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+.
T Consensus 17 l~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 17 LHNIDLNIDQG----EVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999997543
No 313
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=7.2e-05 Score=64.51 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 15 il~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 15 ALDGVSLDIKEG----EFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred eeccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444445555 78999999999999999999986554
No 314
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00037 Score=61.00 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 20 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 20 AVNNVNLEVREQ----EIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEEeeeeEEcCC----eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344554445555 8899999999999999999997644
No 315
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00019 Score=60.88 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999997654
No 316
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=5.1e-05 Score=58.09 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 317
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.62 E-value=0.00016 Score=62.54 Aligned_cols=36 Identities=28% Similarity=0.558 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 17 LDDVSFTVRPG----EFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 44444444555 7899999999999999999997554
No 318
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.0003 Score=60.78 Aligned_cols=37 Identities=30% Similarity=0.621 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 17 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 17 LKDVSFTIPAG----KKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34443334445 78999999999999999999986543
No 319
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.61 E-value=0.00049 Score=60.34 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 20 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 20 VLKGVSLQANAG----DVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444555 78999999999999999999986543
No 320
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=0.00032 Score=59.11 Aligned_cols=26 Identities=35% Similarity=0.198 Sum_probs=23.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...++|+|++|+||||||..++..+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998754
No 321
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00013 Score=62.68 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 18 ~l~~isl~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 18 VLKDINFSIKPG----ETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 344444444455 78999999999999999999986543
No 322
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=0.00022 Score=62.39 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++..+..
T Consensus 22 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 22 ALNNINIKILKN----SITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eecceeeEEcCC----CEEEEECCCCCCHHHHHHHHhccccC
Confidence 455555555555 78999999999999999999986653
No 323
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.61 E-value=0.00012 Score=72.20 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++..+.+.
T Consensus 358 il~~i~l~i~~G----~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 358 ALRNINFKIPAG----KTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred cccCceEEeCCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 345555445555 679999999999999999999876554
No 324
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00014 Score=64.16 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 26 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 26 LLHPLSLTFPAG----KVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 455555555555 7899999999999999999997544
No 325
>PRK08118 topology modulation protein; Reviewed
Probab=97.60 E-value=6e-05 Score=61.27 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=25.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc---cccceEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH---EFEASCF 141 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~ 141 (373)
+.|.|+|++|+||||||+.+++.+.- +++..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 45899999999999999999987643 2444454
No 326
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.60 E-value=0.00048 Score=59.11 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEe
Q 017364 98 RFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLA 143 (373)
Q Consensus 98 ~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 143 (373)
..+|..+-....++.|+|++|+|||+|+..++....... ..++|+.
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 334443333348999999999999999999987754443 4556664
No 327
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.59 E-value=8.1e-05 Score=67.04 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=41.6
Q ss_pred cCcccchhhHHHHHHHHhcC----CCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 85 KELVGLDSRLEKLRFLINKG----PTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|.++.++++...+... ....++++|+||+|+||||||+.++..+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999998888642 223588999999999999999999987754
No 328
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=6.8e-05 Score=68.70 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 ~l~~vsl~i~~G----e~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 19 VIKGIDLDVADG----EFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred EEeeeeEEEcCC----CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 344444444455 78999999999999999999985443
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.59 E-value=9.4e-05 Score=61.38 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG 172 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
..+-+...+..+ ..++|.|++|+|||||++.++..+.+.. ..+.+.+..+..... ..............
T Consensus 14 ~~~~l~~~v~~g----~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~------~~~~~~~~~~~~~~ 82 (186)
T cd01130 14 QAAYLWLAVEAR----KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPH------PNWVRLVTRPGNVE 82 (186)
T ss_pred HHHHHHHHHhCC----CEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCC------CCEEEEEEecCCCC
Confidence 345555555555 7799999999999999999998776443 233332221111000 00000000000000
Q ss_pred CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcE-EEEEeCChh
Q 017364 173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSR-IFITSRDKH 229 (373)
Q Consensus 173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~-iliTtR~~~ 229 (373)
..........+...++..+-.++++.+.+.+.+..+... . .|.. ++.|.+..+
T Consensus 83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~-~---tGh~g~~~T~Ha~s 136 (186)
T cd01130 83 GSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM-N---TGHPGGMTTIHANS 136 (186)
T ss_pred CCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH-h---cCCCCceeeecCCC
Confidence 111122344566667778889999999887765433322 1 2444 666666553
No 330
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00051 Score=59.97 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 20 l~~~s~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 20 LKNINMDFPER----QITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred ecceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCc
Confidence 44444444555 78999999999999999999986554
No 331
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.59 E-value=0.00038 Score=59.55 Aligned_cols=37 Identities=32% Similarity=0.640 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 19 ~l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 19 VLKNISFSIKPG----EKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred cccceEEEECCC----CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 455555555555 7899999999999999999997544
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.58 E-value=0.00034 Score=63.91 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=65.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
..+.|.|++|+||||+++.+...+.......++.. +..+.... . ...+ ...... ..........++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~----~~~~----i~q~ev-g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-N----KRSL----INQREV-GLDTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-C----ccce----EEcccc-CCCCcCHHHHHHHhh
Confidence 77999999999999999999987765444444432 11110000 0 0000 000000 111123455677788
Q ss_pred CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364 188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL 231 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~ 231 (373)
+..+-+|++|++.+.+.....+... ..|..++.|.+..+..
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 8899999999998877665533332 2366688888876544
No 333
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.58 E-value=0.00026 Score=61.27 Aligned_cols=36 Identities=31% Similarity=0.656 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 18 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 18 LDNISLRIKPG----EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred eeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34444334445 7899999999999999999997654
No 334
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.58 E-value=0.00039 Score=60.20 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 19 LKGLSLTIPPG----KTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred eeceEEEecCC----CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 34444344455 78999999999999999999986543
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0011 Score=61.12 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.7
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++++++|++|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988765
No 336
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.58 E-value=0.00014 Score=57.07 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
||....++++...+..-......|.|+|++|+||+++|+.+...-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5667777777776654222236689999999999999998877433
No 337
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.58 E-value=0.0051 Score=59.49 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=40.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...++|+...++.+...+..-......|.|+|++|+|||++|+.+.....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 35799999999888888775444446799999999999999999987643
No 338
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.58 E-value=7.3e-05 Score=72.30 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 26 il~~vsl~i~~G----e~~~liG~NGsGKSTLl~~l~Gl~~p 63 (510)
T PRK15439 26 VLKGIDFTLHAG----EVHALLGGNGAGKSTLMKIIAGIVPP 63 (510)
T ss_pred eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345555445555 78999999999999999999976543
No 339
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00029 Score=61.08 Aligned_cols=36 Identities=33% Similarity=0.628 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 17 LKDVSLSINPG----EFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 44444444455 7899999999999999999997544
No 340
>PRK06696 uridine kinase; Validated
Probab=97.57 E-value=0.00014 Score=62.17 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 89 GLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 89 GR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.|.+.+++|...+.. ...++.+|+|.|++|+||||||+.++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356677777776653 34457899999999999999999999988644
No 341
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.57 E-value=0.00031 Score=60.71 Aligned_cols=36 Identities=31% Similarity=0.621 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 16 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 16 LDDVSFSVRPG----EIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCceEEecCC----cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 44444444455 7899999999999999999997543
No 342
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00016 Score=66.13 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 21 l~~vsl~i~~G----ei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 21 LNNVSLHIPAG----EIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred EEeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999986543
No 343
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.56 E-value=9.6e-05 Score=61.95 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=38.0
Q ss_pred ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+|-...+..|..-+.++ ++.++.|++|.||||..+.+.+-+...-+.+.|.
T Consensus 12 Fg~k~av~~isf~v~~G----~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~ 62 (300)
T COG4152 12 FGDKKAVDNISFEVPPG----EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62 (300)
T ss_pred cCceeeecceeeeecCC----eEEEeecCCCCCccchHHHHhccCCccCceEEEc
Confidence 34334445555444555 8999999999999999999999887766666665
No 344
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.56 E-value=0.0033 Score=63.17 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=37.6
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++|+...++.+...+..-......|.|+|++|+|||++|+.+...-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999988888876665332233579999999999999999998754
No 345
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.56 E-value=0.00081 Score=64.36 Aligned_cols=50 Identities=26% Similarity=0.510 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 91 DSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 91 ~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..-++++..||.. +....+++.|+||+|+||||.++.++..+. +...-|.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 4567778887764 223357999999999999999999998764 4455564
No 346
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.56 E-value=0.00059 Score=59.24 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 18 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 18 LNDLSLYVDPG----ELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999997654
No 347
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.56 E-value=0.00058 Score=67.66 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=71.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
+-+.|+|++|+|||++++.++......| +......+. ....+. ........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~~~-------------~~~~g~------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFV-------------EMFVGV------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHHhH-------------Hhhhcc------cHHHHHHHHHHHHh
Confidence 4599999999999999999988765332 111111100 000010 11111222333334
Q ss_pred CCceEEEecccccHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCC
Q 017364 189 HKKVLLVIDDVIELQ----------------QLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHL 245 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L 245 (373)
..+++|++|+++... .+..++....-+ ..+..+|.||...+.+.. ...+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 578899999986531 233333222211 224445556665543221 124567889989
Q ss_pred CHhHHHHHHHHhhcC
Q 017364 246 NYDEALGLFCLKAFK 260 (373)
Q Consensus 246 ~~~ea~~l~~~~~~~ 260 (373)
+.++-.+++..+...
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 998888888877633
No 348
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00055 Score=59.37 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 19 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 19 LKDISVKFEGG----AIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444445 7899999999999999999998654
No 349
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0003 Score=60.68 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999987543
No 350
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.55 E-value=0.00021 Score=62.25 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 16 ALKNINLDIPKN----QVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred eecceeEEECCC----CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 344554445555 78999999999999999999987653
No 351
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.55 E-value=0.00016 Score=70.43 Aligned_cols=38 Identities=24% Similarity=0.521 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.+.....+
T Consensus 337 il~~i~l~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 337 ALRPVSFTVPPG----ERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred cccceeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444444455 78999999999999999999875543
No 352
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0014 Score=60.06 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=83.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR 188 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 188 (373)
|=..++||||.||||++.++++.+. |+ ++.-....... -.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~---n~d-Lr~LL~~-----------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKL---DSD-LRHLLLA-----------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccC---cHH-HHHHHHh-----------------------C
Confidence 3478999999999999999998664 22 22211111111 011 2222221 2
Q ss_pred CCceEEEecccccHH--------------------HHHHHhcCC---CCCCCCcEEEE-EeCChhhH-----hhcCCCce
Q 017364 189 HKKVLLVIDDVIELQ--------------------QLESLAGKH---DWFGIGSRIFI-TSRDKHLL-----MAHGVDEV 239 (373)
Q Consensus 189 ~~~~LlvlDdv~~~~--------------------~l~~l~~~~---~~~~~g~~ili-TtR~~~~~-----~~~~~~~~ 239 (373)
..+-+||+.|++-.- .+.-++..+ .+...+-|||| ||...+-+ ..-+.+-.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 345567777764221 122222222 21122345554 55544321 11123456
Q ss_pred EeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294 (373)
Q Consensus 240 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 294 (373)
+.+.-=+.+....|+........ ...++.+|.+...+.-+.-..++..+-
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence 78888899999999988875433 134567777777777777777776653
No 353
>PRK04132 replication factor C small subunit; Provisional
Probab=97.55 E-value=0.0041 Score=62.73 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=89.1
Q ss_pred Eec--cCCcchhHHHHHHHHHHh-ccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCC
Q 017364 113 ICG--MGGIGKTTLARVVYDLIS-HEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRH 189 (373)
Q Consensus 113 I~G--~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 189 (373)
+.| |.++||||+|..+++.+- +.+...+.-.+. +...+.. ..++++..+....+. -..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgid-~IR~iIk~~a~~~~~---------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERGIN-VIREKVKEFARTKPI---------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccHH-HHHHHHHHHHhcCCc---------------CCC
Confidence 347 899999999999998762 222222222222 1112222 233333322111100 012
Q ss_pred CceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364 190 KKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPW 265 (373)
Q Consensus 190 ~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~ 265 (373)
+.-++|+|+++.. .....++.........+++|+++.+.. +...+ .....+.+.+++.++....+...+......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~- 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE- 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence 3469999999754 344444444433344677777776653 22222 234589999999999988887665322211
Q ss_pred chHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 266 KGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 266 ~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
...+....|+..++|.+.....+..
T Consensus 709 -i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 -LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2245788999999998865544433
No 354
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.55 E-value=0.00058 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.++++|+|++|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999885
No 355
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00028 Score=62.60 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 ~l~~vsl~i~~G----e~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 19 ALNNINFIAPRN----SRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred eeeEeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444444455 78999999999999999999976543
No 356
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0019 Score=63.39 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=102.5
Q ss_pred ccCcccchhh---HHHHHHHHhcC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSR---LEKLRFLINKG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~---~~~l~~~l~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
-.++.|-++. ++++...|... ..-++=+.|+||+|+|||-||+.++....-. ++-.+.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP----F~svSG-------- 377 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----FFSVSG-------- 377 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc----eeeech--------
Confidence 3568887764 55555556532 2225679999999999999999999854322 221111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc-----------------HHHHHHHhcCCCCCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE-----------------LQQLESLAGKHDWFG 216 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-----------------~~~l~~l~~~~~~~~ 216 (373)
.+..+.+.+... ......+...-.+.++++.+|+++. ...+.+++....-+.
T Consensus 378 -----SEFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 -----SEFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -----HHHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111222222111 1112223333356788999997753 123555554443222
Q ss_pred C--CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364 217 I--GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287 (373)
Q Consensus 217 ~--g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 287 (373)
. +.-+|-+|...+.++. -+.+..+.++..+..+..++|.-++...... ....+... ++..+-|++-|.-
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHHH
Confidence 2 2333344544443322 2345678899999999999999888544433 23444555 8888988887653
No 357
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00029 Score=61.66 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 17 il~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 17 ILNDLSLSLPTG----KITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EEeeeeeEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 345554445555 7899999999999999999997544
No 358
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.54 E-value=0.00075 Score=56.24 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=56.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH--hccccceEEEeechhhhcccC---------HHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI--SHEFEASCFLANVREISKKSG---------LVFLQKQL 161 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~---------~~~~~~~~ 161 (373)
+-....+.|... .++.+.|++|+|||.||...+-+. ..+|...++...........+ +.....-+
T Consensus 8 ~Q~~~~~al~~~----~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 8 EQKFALDALLNN----DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp HHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred HHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 333444444433 789999999999999998888643 355667766654322111111 01111111
Q ss_pred HHHHhCCCCCCCcchhhhHHH------HHHhhCCC---ceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364 162 ISQLLNLPDSGVWNVYDGMNM------IRSRLRHK---KVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK 228 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~ 228 (373)
...+.... .....+..... -...++++ ..++|+|++.+ ..++..++... +.||+++++--..
T Consensus 84 ~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 84 YDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 11111110 00011111100 01112332 46899999965 44666665543 6799999987754
No 359
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.54 E-value=0.00036 Score=60.08 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999987654
No 360
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.53 E-value=0.00038 Score=60.49 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..
T Consensus 15 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTVKKG----EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEEcCC----CEEEEECCCCCCHHHHHHHHhCC
Confidence 344555445555 78999999999999999999986
No 361
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00032 Score=64.77 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+..+ .+++|.|++|+|||||++.++....+
T Consensus 19 l~~vsl~i~~G----e~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 19 SKDINLDIHEG----EFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34444444444 78999999999999999999986543
No 362
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.53 E-value=0.00022 Score=62.18 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++...
T Consensus 17 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 17 LRGLNLEVRPG----EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred eecceeEEcCC----CEEEEECCCCCCHHHHHHHHcCCc
Confidence 44444444455 789999999999999999999863
No 363
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00095 Score=64.41 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=83.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
+..+.++||+|+|||.||+.++......|-.+..- .++....++ +.......+....
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~vGe------sek~ir~~F~~A~ 332 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKWVGE------SEKNIRELFEKAR 332 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccccch------HHHHHHHHHHHHH
Confidence 56899999999999999999999554443222211 111111110 1122233344444
Q ss_pred CCCceEEEecccccH-------------HHHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCH
Q 017364 188 RHKKVLLVIDDVIEL-------------QQLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNY 247 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~ 247 (373)
+..+++|.+|+++.. ..+..++...... ..+..||-+|........ ......+.+++.+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678899999988531 2333443333211 223334445544433221 13456889999999
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 017364 248 DEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG 281 (373)
Q Consensus 248 ~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 281 (373)
++..+.|..+........ ...-..+.+++.+.|
T Consensus 413 ~~r~~i~~~~~~~~~~~~-~~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPPL-AEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCcc-hhhhhHHHHHHHhcC
Confidence 999999998875322220 112235556666666
No 364
>PRK04296 thymidine kinase; Provisional
Probab=97.52 E-value=0.00018 Score=59.86 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=59.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC--CCcchhhhHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS--GVWNVYDGMNMIRSR 186 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 186 (373)
.++.|+|+.|.||||++..++.+...+...++++... +...... ..+...+ +.... ......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~----~~i~~~l-g~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGE----GKVVSRI-GLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccC----CcEecCC-CCcccceEeCChHHHHHHHHh-
Confidence 5788999999999999999999876554444444210 0100110 1111111 11000 01122333333333
Q ss_pred hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364 187 LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH 229 (373)
Q Consensus 187 l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~ 229 (373)
..++.-+||+|.+.- .+++.++...+. ..|..|++|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 234556899999853 333444443322 24778999999853
No 365
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.52 E-value=0.00038 Score=60.80 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..
T Consensus 22 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKG----EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCC----cEEEEECCCCCCHHHHHHHHcCC
Confidence 455555555555 78999999999999999999874
No 366
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.52 E-value=0.00012 Score=61.26 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
|....++.+.-.+..+ .+++|.|++|+|||||.+.+...+++.
T Consensus 19 G~~~Ild~v~l~V~~G----ei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 19 GDRVILDGVDLDVPRG----EILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred CCEEEecCceeeecCC----cEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 4444555555445555 889999999999999999999876654
No 367
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.0012 Score=67.43 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=38.5
Q ss_pred cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|-+..++.+...+... ..+ ...+.++||+|+|||+||+.+++.+-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 56899999999998877521 122 24578999999999999999998764
No 368
>PRK13409 putative ATPase RIL; Provisional
Probab=97.51 E-value=0.00051 Score=67.31 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+..+. .+.++ .+++|.|++|+|||||++.++..+.+.
T Consensus 89 ~L~~l~-~i~~G----ev~gLvG~NGaGKSTLlkiL~G~l~p~ 126 (590)
T PRK13409 89 KLYGLP-IPKEG----KVTGILGPNGIGKTTAVKILSGELIPN 126 (590)
T ss_pred eEecCC-cCCCC----CEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 344443 34444 799999999999999999999866544
No 369
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00041 Score=63.64 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999986543
No 370
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.51 E-value=0.00084 Score=58.04 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+..+|.-+-.....+.|.|++|+|||+|+.+++.........++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344445444344588999999999999999998876444455666664
No 371
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.51 E-value=0.00025 Score=65.06 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+..+ .+++|.|++|+|||||.+.++....+
T Consensus 21 l~~vsl~i~~G----e~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 21 LDDLSLEIEAG----ELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred EeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444444 78999999999999999999985543
No 372
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.51 E-value=0.00069 Score=60.06 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++++|+|++|+||||++..++..+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999877544
No 373
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.51 E-value=0.00017 Score=61.06 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.7
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
...++.|+|++|+|||+++.+++.........++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3489999999999999999999987655556677775
No 374
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00027 Score=63.40 Aligned_cols=39 Identities=33% Similarity=0.524 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.-+.+.
T Consensus 22 ~l~~vsl~i~~G----e~v~iiG~nGsGKSTLl~~L~Gl~~p~ 60 (305)
T PRK13651 22 ALDNVSVEINQG----EFIAIIGQTGSGKTTFIEHLNALLLPD 60 (305)
T ss_pred ceeeeEEEEeCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344555445555 789999999999999999999865443
No 375
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.00034 Score=61.07 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=24.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++....+.
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 789999999999999999999876543
No 376
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.51 E-value=0.00071 Score=59.30 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG 172 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
.++.+..++.... ..+.|.|+.|+||||+++.+...+......++.+.+..+... ... .+. ...
T Consensus 68 ~~~~l~~~~~~~~---GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~-~v~--- 131 (264)
T cd01129 68 NLEIFRKLLEKPH---GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQV-QVN--- 131 (264)
T ss_pred HHHHHHHHHhcCC---CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEE-EeC---
Confidence 3455555554332 679999999999999999998877543233344432221110 000 000 000
Q ss_pred CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
..........++..++..+-.++++++.+.+....++.... .|..++-|.+..+.
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~ 186 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDA 186 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence 00011245567777888899999999988876655443332 25557777776644
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.51 E-value=0.00032 Score=65.35 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 180 MNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 180 ~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
...|.+.|-.+|-||+||+-. ...-++.++..+. .+ .++|++|+++.++.. +.+++.+
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~-~lVi~sh~QDfln~v-CT~Ii~l 292 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RI-ILVIVSHSQDFLNGV-CTNIIHL 292 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---Cc-eEEEEecchhhhhhH-hhhhhee
Confidence 335666667789999999753 3334556665554 12 589999999877664 4444444
No 378
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00042 Score=60.57 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 19 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 19 AVKNVNLDVQRG----TVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCC
Confidence 455555445555 7899999999999999999998654
No 379
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.50 E-value=0.00028 Score=59.89 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++....+.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 789999999999999999999865443
No 380
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00036 Score=60.84 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 18 ALKSINLPIPAR----QVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeecceEEecCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 355555555555 7899999999999999999998654
No 381
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00017 Score=62.57 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 17 VNNLNLEIAKG----EFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred eeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444344445 7899999999999999999997544
No 382
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.00035 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999986543
No 383
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.50 E-value=0.00033 Score=60.61 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 16 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 16 LDDVNLEVPTG----SLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred eeeEEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44444344455 7899999999999999999997543
No 384
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.50 E-value=0.00066 Score=56.79 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEeccCCcchhHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
+++|+|++|+|||||++.++.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998754
No 385
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.49 E-value=0.00053 Score=60.53 Aligned_cols=36 Identities=33% Similarity=0.653 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+.
T Consensus 23 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 23 FDNISLTVPRG----KITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444444445 7899999999999999999997654
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.49 E-value=0.00063 Score=68.45 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++++|+||+|.|||||.+.+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 378999999999999999999876
No 387
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00059 Score=60.83 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 22 l~~vsl~i~~G----e~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 22 LFDIDLEVKKG----SYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred eeeeEEEEcCC----CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 44444444455 78999999999999999999986543
No 388
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0013 Score=61.22 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=81.3
Q ss_pred cCcccchh---hHHHHHHHHhcCC-------CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDS---RLEKLRFLINKGP-------TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~---~~~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
++..|-++ |+++|.+.|.... .=++=|.++||+|.|||-||+.++.... .-+|+...+++..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEFdE---- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEFDE---- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccchhh----
Confidence 34666664 5777777776432 1156799999999999999999998543 3344432211111
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCCCC--CCc
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDWFG--IGS 219 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~~--~g~ 219 (373)
++ .+. ........+...-..-+++|.+|.++.. +.+.+++....-+. .|.
T Consensus 376 ------m~---VGv------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 376 ------MF---VGV------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred ------hh---hcc------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 00 111 1112222333333567899999988532 23555555443222 233
Q ss_pred EEEEEeCChhhHhh----c-CCCceEeCCCCCHhHHHHHHHHhh
Q 017364 220 RIFITSRDKHLLMA----H-GVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 220 ~iliTtR~~~~~~~----~-~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
-||-.|.-++.++. . +.+..+.++..+..--.++|..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 23333333332222 1 234456666666666666665554
No 389
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.03 Score=48.74 Aligned_cols=173 Identities=18% Similarity=0.159 Sum_probs=90.1
Q ss_pred cCcccchhhHHHHHHHHh---------cC-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLIN---------KG-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~---------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
...-|-+...+.+....- .+ ....+-+.++||+|.|||.||+.++...... +|-. +.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----FFSv-----SS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----FFSV-----SS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc----eEEe-----eh----
Confidence 346677766666665432 11 1224679999999999999999999865422 2221 11
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH---------HHHH----HHhcCC---CCCCC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL---------QQLE----SLAGKH---DWFGI 217 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~---------~~l~----~l~~~~---~~~~~ 217 (373)
..+.+..+++ .+.++..+.+.. .+++-+|.+|.+++. +.-+ +|+... .....
T Consensus 200 ----SDLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 200 ----SDLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred ----HHHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 1122222222 112333333332 578899999988631 1111 222222 12234
Q ss_pred CcEEEEEeCChhhHhhc---CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 218 GSRIFITSRDKHLLMAH---GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 218 g~~iliTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
|..||-.|.-+-++... +....|.++-.....-..+|..+.+.. +.....+..+++..++.|+.
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 55555566655443321 122334444334444445676666432 22233445778888888875
No 390
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.49 E-value=9.6e-05 Score=68.58 Aligned_cols=37 Identities=30% Similarity=0.621 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.+...+.
T Consensus 18 vL~~vs~~i~~G----eiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 18 VLDGVDLSVREG----SLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred EEEeeEEEECCC----CEEEEECCCCchHHHHHHHHhcCCC
Confidence 344444444555 7899999999999999999997544
No 391
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.49 E-value=0.00039 Score=61.34 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|+|++|.|||||++.++..+.
T Consensus 19 ~l~~isl~I~~G----e~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 19 VLENISFSISPG----QRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred ceeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhhhcC
Confidence 355555555556 7899999999999999999998764
No 392
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00057 Score=60.71 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++..+.
T Consensus 23 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 23 LFDVNLTIEDG----SYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred eeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444445 7899999999999999999997543
No 393
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00027 Score=58.96 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
..|.-..+..+.-.+..+ .+++|.|++|+|||||.+.++..++..-+.+.|
T Consensus 12 ~YG~~~~L~gvsl~v~~G----eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~ 62 (237)
T COG0410 12 GYGKIQALRGVSLEVERG----EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF 62 (237)
T ss_pred cccceeEEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence 445444555555555555 889999999999999999999876655444444
No 394
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00058 Score=59.35 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++++.|++|+|||||.+.++.-..+.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcCCCC
Confidence 889999999999999999999854443
No 395
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00031 Score=62.33 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 23 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 23 LNDVSFHVKQG----EWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred eeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444444455 78999999999999999999986543
No 396
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00039 Score=61.99 Aligned_cols=38 Identities=26% Similarity=0.548 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 22 ~l~~vsl~i~~G----e~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 22 GLDNISFELEEG----SFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred ceeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345555445555 78999999999999999999975443
No 397
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.48 E-value=0.0002 Score=62.98 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 19 ALHAVDLNIHHG----EMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEecceEEEcCC----cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 455555555555 78999999999999999999986643
No 398
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.47 E-value=0.00026 Score=68.42 Aligned_cols=36 Identities=22% Similarity=0.691 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+..+ .+++|.|++|+|||||++.++....
T Consensus 276 l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 276 VDDVSFSLRRG----EILGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred cccceeEEeCC----cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 44444334444 7899999999999999999998665
No 399
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00042 Score=61.33 Aligned_cols=38 Identities=42% Similarity=0.662 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 17 ~l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (274)
T PRK13644 17 ALENINLVIKKG----EYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred eeeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344444445555 78999999999999999999986543
No 400
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.47 E-value=0.0032 Score=55.45 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=28.4
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.+++++++|++|+||||++..++..+......+.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999999999999998876554344444
No 401
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00082 Score=58.48 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+.-.+.++ .+++|+|++|+|||||++.++...
T Consensus 17 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 17 ALFDINMQIEQN----KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence 344444444555 789999999999999999999754
No 402
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.47 E-value=0.00061 Score=58.20 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 19 ~l~~i~~~i~~G----~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 19 ALDNVSLTIRAG----EKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 344444444555 7899999999999999999997644
No 403
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00096 Score=58.83 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 34 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 34 ALFDVDLDIPEK----TVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEEEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344444445555 7899999999999999999998764
No 404
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.001 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 7899999999999999999987544
No 405
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00028 Score=64.51 Aligned_cols=37 Identities=35% Similarity=0.588 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 22 l~~isl~i~~G----e~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 22 IDNLNLTIKQG----TMVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 44444444455 78999999999999999999985543
No 406
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00092 Score=58.93 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 36 l~~vsl~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 36 IKGIDMQFEKN----KITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhccC
Confidence 44444444455 7899999999999999999998654
No 407
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.45 E-value=0.00067 Score=59.28 Aligned_cols=37 Identities=30% Similarity=0.557 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 16 LDGLNFSVAAG----EKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444455 78999999999999999999986543
No 408
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.45 E-value=0.00024 Score=71.59 Aligned_cols=39 Identities=28% Similarity=0.541 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.+| ..++|+|++|+|||||++.+.+.+.+.
T Consensus 496 vL~~isl~i~~G----e~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 496 VLKGLTFTLHPG----EVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred cccCceEEEcCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 355555555556 789999999999999999999866543
No 409
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00049 Score=58.90 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
++.+...+..+ ..++|.|++|+|||||++.+..-+.+..
T Consensus 20 l~~v~~~i~~G----e~~~i~G~nGsGKSTL~~~l~GLl~p~~ 58 (235)
T COG1122 20 LKDVSLEIEKG----ERVLLIGPNGSGKSTLLKLLNGLLKPTS 58 (235)
T ss_pred eeeeEEEECCC----CEEEEECCCCCCHHHHHHHHcCcCcCCC
Confidence 44444444445 6899999999999999999988665544
No 410
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.44 E-value=0.00027 Score=64.30 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++...++
T Consensus 20 ~L~~vsl~i~~G----ei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 20 ALNNVSLHVPAG----QIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 355555445555 78999999999999999999875443
No 411
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.44 E-value=0.00031 Score=69.17 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
++.+.-.+.++ ..++|+|++|+|||||++.+.....+.
T Consensus 348 l~~inl~i~~G----~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 348 LDSISLVIEPG----ETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred ccCeeEEecCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 44444444445 779999999999999999999866543
No 412
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.44 E-value=0.00025 Score=64.95 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 78999999999999999999986543
No 413
>PRK07667 uridine kinase; Provisional
Probab=97.44 E-value=0.00037 Score=58.16 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
+.+.+.+........+|+|.|++|+||||+|..+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44555565555556899999999999999999999987654
No 414
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.44 E-value=0.0005 Score=67.95 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.+.-.+.+| ..++|+|++|+|||||++.+...+
T Consensus 366 L~~i~l~i~~G----~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 366 AGPLNFTLPAG----QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444444455 789999999999999999998876
No 415
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00055 Score=59.85 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 21 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 21 ALHDISLEFEQN----QVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eecceeEEEeCC----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345555445555 789999999999999999999754
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.44 E-value=8.1e-05 Score=61.71 Aligned_cols=21 Identities=33% Similarity=0.184 Sum_probs=18.9
Q ss_pred EEEEeccCCcchhHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~ 130 (373)
+++|+|++|.||||+++.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999999984
No 417
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00047 Score=60.56 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 22 il~~is~~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 22 ILEGVSMEIYQS----KVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EeeceEEEEcCC----cEEEEECCCCCCHHHHHHHHhcccCC
Confidence 455555555556 78999999999999999999987553
No 418
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.43 E-value=0.00066 Score=56.94 Aligned_cols=36 Identities=42% Similarity=0.720 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 16 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 16 FEGLSFTLNAG----EALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444444455 7899999999999999999988644
No 419
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00074 Score=59.41 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++...
T Consensus 25 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 25 AVKNVWLDIPKN----QITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EeecceEEEcCC----CEEEEECCCCCCHHHHHHHHHhhh
Confidence 455555555555 789999999999999999999754
No 420
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00052 Score=60.03 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 19 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 19 VIKGVDLKIPQN----GVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCCc
Confidence 455555555555 78999999999999999999986543
No 421
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.43 E-value=0.00018 Score=72.53 Aligned_cols=39 Identities=28% Similarity=0.475 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.+| ..++|+|++|+|||||++.++..+.+.
T Consensus 480 vL~~i~l~i~~G----~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 480 ALDNVSLTIRPG----EKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ceeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345555445555 779999999999999999998765543
No 422
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00041 Score=65.49 Aligned_cols=37 Identities=27% Similarity=0.588 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
+..+.-.+.++ +.++|+|++|+|||||+..+.....+
T Consensus 337 l~~l~~t~~~g----~~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 337 LSDLNLTIKAG----QLTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred cCCceeEecCC----cEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 33444344444 78999999999999999999986553
No 423
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.42 E-value=0.00097 Score=58.81 Aligned_cols=37 Identities=32% Similarity=0.559 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 27 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 27 VLNNVSLSLKSG----ETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred eEeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555555555 7899999999999999999997543
No 424
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.42 E-value=0.00035 Score=67.66 Aligned_cols=25 Identities=36% Similarity=0.753 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~ 314 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRP 314 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCC
Confidence 7899999999999999999997544
No 425
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.42 E-value=0.0005 Score=59.37 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=31.3
Q ss_pred HHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEe
Q 017364 99 FLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLA 143 (373)
Q Consensus 99 ~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 143 (373)
..|..+-....++.|+|++|+|||+|+..++...... ...++|+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444333335899999999999999999998653222 24666765
No 426
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00042 Score=61.04 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++.....
T Consensus 22 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 22 VAENLTVEIPDG----HFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred EeeecceEECCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 455555555555 78999999999999999999986543
No 427
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00061 Score=59.83 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 28 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 28 ALKNINLDIAKN----QVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence 455555555555 7899999999999999999997654
No 428
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.41 E-value=0.00067 Score=62.36 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998654
No 429
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0011 Score=55.98 Aligned_cols=39 Identities=33% Similarity=0.582 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
++.+...+..+ ..++|+|.+|.|||||.+.++.-+.+.-
T Consensus 43 L~disf~i~~G----e~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 43 LKDISFEIYKG----ERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred ecCceEEEeCC----CEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 55555555556 6799999999999999999998777653
No 430
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.41 E-value=0.00019 Score=69.41 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|+|++|+|||||++.++....+
T Consensus 19 ~l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 19 ALSGAALNVYPG----RVMALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred EeeeeeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345555445555 88999999999999999999986543
No 431
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.41 E-value=0.0014 Score=52.21 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=61.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHH----hCCC-----CCCCc---ch
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL----LNLP-----DSGVW---NV 176 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~---~~ 176 (373)
..|-|++.+|.||||+|...+-+...+...+.++.-..... ..+-...+..+ ..+ .+.. ..... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 46788888999999999998887665555555543222111 11222222221 000 0000 00000 11
Q ss_pred hhhHHHHHHhhC-CCceEEEecccc--------cHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364 177 YDGMNMIRSRLR-HKKVLLVIDDVI--------ELQQLESLAGKHDWFGIGSRIFITSRDKH 229 (373)
Q Consensus 177 ~~~~~~l~~~l~-~~~~LlvlDdv~--------~~~~l~~l~~~~~~~~~g~~iliTtR~~~ 229 (373)
.......++.+. +.--|||||++- +.+.+-+++...+ .+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp---~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP---EDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC---CCCEEEEECCCCC
Confidence 112233344443 455699999873 3344555555443 3667999999874
No 432
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00099 Score=58.17 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 20 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 20 LNDINLPIYEN----KITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeceeEEEcCC----CEEEEECCCCCCHHHHHHHHHhccC
Confidence 44444444455 7899999999999999999998643
No 433
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.40 E-value=0.00018 Score=71.14 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++..+.+.
T Consensus 356 il~~i~l~i~~G----e~iaIvG~SGsGKSTLl~lL~gl~~p~ 394 (592)
T PRK10790 356 VLQNINLSVPSR----GFVALVGHTGSGKSTLASLLMGYYPLT 394 (592)
T ss_pred eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345555445555 789999999999999999999876554
No 434
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.40 E-value=0.0013 Score=59.89 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=55.1
Q ss_pred eEEEEEeccCCcchhH-HHHHHHHHH-hccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364 108 VRMIGICGMGGIGKTT-LARVVYDLI-SHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTt-La~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (373)
.++++++||.|+|||| ||+..+.-. ...-..+.++. .+.+.--..-+-+.+..+++.+-....+..++...+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 4899999999999997 555544433 23333444443 22223333334455666677665555566665554444
Q ss_pred hhCCCceEEEeccc-------ccHHHHHHHhcCC
Q 017364 186 RLRHKKVLLVIDDV-------IELQQLESLAGKH 212 (373)
Q Consensus 186 ~l~~~~~LlvlDdv-------~~~~~l~~l~~~~ 212 (373)
. .+. =++++|-+ .....++.+....
T Consensus 279 l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 279 L-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred h-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 2 333 46667844 2344556665543
No 435
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.40 E-value=0.00028 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=21.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|+|++|.|||||++.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999843
No 436
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.40 E-value=0.00031 Score=68.63 Aligned_cols=39 Identities=31% Similarity=0.552 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++....+.
T Consensus 333 ~l~~~~~~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~~ 371 (544)
T TIGR01842 333 TLRGISFRLQAG----EALAIIGPSGSGKSTLARLIVGIWPPT 371 (544)
T ss_pred ccccceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 355555455555 789999999999999999999865443
No 437
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.40 E-value=0.00035 Score=60.82 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=31.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV 145 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 145 (373)
+.++|.|.+|+|||||+..++..++.+|...+++..+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~i 106 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGV 106 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEe
Confidence 7899999999999999999999988777766766544
No 438
>PLN03073 ABC transporter F family; Provisional
Probab=97.40 E-value=0.00033 Score=70.04 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..++.+.-.+..+ ..++|+|++|+|||||++.++..
T Consensus 191 ~ll~~isl~i~~G----e~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 191 DLIVDASVTLAFG----RHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCEEEECCC----CEEEEECCCCCCHHHHHHHHcCC
Confidence 3555555555555 78999999999999999999864
No 439
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00049 Score=60.40 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=32.2
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+.|+...++.+...+.++ .+++|.|++|+|||||++.++..+.
T Consensus 17 ~~~~~~~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKN----EITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred EeCCEEEEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcccc
Confidence 345444556665555666 7899999999999999999987653
No 440
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.39 E-value=0.00035 Score=64.44 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+..+ .+++|.|++|+|||||++.++.....
T Consensus 30 l~~vsl~i~~G----e~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 30 ISNLDLTINNG----EFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred EeeeEEEEeCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34444444444 78999999999999999999985443
No 441
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00037 Score=67.35 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCc
Confidence 6899999999999999999997654
No 442
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.39 E-value=0.0064 Score=57.08 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=32.4
Q ss_pred hHHHHHHHHh-----cCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLIN-----KGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
-+.++..||. ...-+.+++.|+||+|+||||-++.++..+.
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3677777777 3334468999999999999999999988654
No 443
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00053 Score=60.84 Aligned_cols=39 Identities=33% Similarity=0.607 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+..+ .+++|.|++|.|||||++.++....+.
T Consensus 22 ~l~~vsl~i~~G----e~~~i~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 22 ALKDVSFSVYEG----EWVAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred ceeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 344444444555 789999999999999999999865443
No 444
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00044 Score=60.67 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 19 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 19 AVEDVNLNIEPR----SVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred eeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhccCC
Confidence 344554445555 7899999999999999999998654
No 445
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00046 Score=60.46 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=31.1
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
|....++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 21 ~~~~~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 21 NDKAILKDITIKIPNN----SIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred CCceeEeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4334456666555555 7899999999999999999997543
No 446
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00045 Score=60.30 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+...+.++ .+++|.|++|+|||||++.++..
T Consensus 19 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 19 LKGISMEIEEK----SVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EeeeeEEEeCC----CEEEEECCCCCCHHHHHHHHhhh
Confidence 44444444555 78999999999999999999863
No 447
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0011 Score=58.59 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 35 ~l~~vs~~i~~G----e~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 35 ALVDVHLKIPAK----KIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence 455555555555 789999999999999999998654
No 448
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.001 Score=58.79 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 40 l~~vsl~i~~G----e~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 40 LKNINLDIHEN----EVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44444444445 7899999999999999999998764
No 449
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.39 E-value=0.00015 Score=70.56 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.+| ..++|+|++|+|||||++.+...+.+.
T Consensus 350 vL~~isl~i~~G----~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 350 VLDGVSLDLPPG----ERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 355555455555 789999999999999999998765543
No 450
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0003 Score=68.07 Aligned_cols=38 Identities=29% Similarity=0.704 Sum_probs=30.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 20 il~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 20 ALDNVSLKVRAG----EIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eecceeEEEeCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 455555555555 78999999999999999999986653
No 451
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0012 Score=57.61 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 20 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 20 VKDVSMDFPEN----SVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EecceEEEcCC----CEEEEECCCCCCHHHHHHHHHhccc
Confidence 44444444555 7899999999999999999998653
No 452
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00065 Score=60.40 Aligned_cols=37 Identities=27% Similarity=0.575 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....+
T Consensus 23 l~~v~l~i~~G----e~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 23 LNDISFSIPRG----SWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred eeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcccCC
Confidence 44444444445 78999999999999999999987644
No 453
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.38 E-value=0.00021 Score=71.96 Aligned_cols=39 Identities=36% Similarity=0.600 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++....+.
T Consensus 472 il~~i~l~i~~G----~~vaivG~sGsGKSTL~~ll~g~~~p~ 510 (694)
T TIGR01846 472 VLSNLNLDIKPG----EFIGIVGPSGSGKSTLTKLLQRLYTPQ 510 (694)
T ss_pred ccccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444444455 789999999999999999999865443
No 454
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00058 Score=59.61 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 18 ALKKINLDIEEN----QVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence 344444444555 789999999999999999998753
No 455
>PRK14974 cell division protein FtsY; Provisional
Probab=97.37 E-value=0.0036 Score=56.62 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=27.5
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
++.+++++|++|+||||++..++..+......+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 36899999999999999999999877655333333
No 456
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.37 E-value=0.00078 Score=57.60 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364 180 MNMIRSRLRHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKH 229 (373)
Q Consensus 180 ~~~l~~~l~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~ 229 (373)
...+...|-+++-+|.||.. -....+..++..+.. ..++.|+.||++-.
T Consensus 164 raeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~-~~~aTVllTTH~~~ 218 (325)
T COG4586 164 RAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE-ERQATVLLTTHIFD 218 (325)
T ss_pred HHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHH-hhCceEEEEecchh
Confidence 34455666777888899954 334456666655432 34788999999864
No 457
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00047 Score=60.86 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++...
T Consensus 36 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 36 AVNDISMDIEKH----AVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eeeceEEEEcCC----CEEEEECCCCCCHHHHHHHHHhcc
Confidence 455555555555 789999999999999999998753
No 458
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00045 Score=61.21 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 36 il~~vs~~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 36 VLDQVSMGFPAR----AVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EeeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhccCC
Confidence 455555555555 7899999999999999999998654
No 459
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.0012 Score=57.54 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 19 l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 19 VKNVTMKIFKN----QITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EeeeeEeecCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence 44454445555 7899999999999999999997543
No 460
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.36 E-value=0.00029 Score=59.04 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++++|+|++|.|||||++.+...+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999999999998754
No 461
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0018 Score=59.15 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..+++++|++|+||||++..++......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999876444
No 462
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.35 E-value=0.0011 Score=55.86 Aligned_cols=58 Identities=16% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHhhCCCceEEEecccc------cHH-HHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364 183 IRSRLRHKKVLLVIDDVI------ELQ-QLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE 243 (373)
Q Consensus 183 l~~~l~~~~~LlvlDdv~------~~~-~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~ 243 (373)
+.+.+...+-++++|+.. ... .+..++..+.. ..+..||++|++...... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 455566788899999763 223 34344433321 114569999998876543 55566553
No 463
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.35 E-value=0.0013 Score=57.57 Aligned_cols=37 Identities=16% Similarity=0.460 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+.++ .+++|.|++|+|||||++.++.....
T Consensus 19 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 19 VHGVSLTLQRG----RVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred ecceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999986554
No 464
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00054 Score=66.31 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998654
No 465
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00024 Score=68.83 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 20 il~~vs~~i~~G----e~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 20 ALKSVNLTVYPG----EIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCcC
Confidence 455555555555 7899999999999999999987554
No 466
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.0019 Score=56.73 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 28 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 28 LKNINLSIPEN----EVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44444444445 7899999999999999999998654
No 467
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.35 E-value=0.0011 Score=60.96 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
..++.|.|++|+|||||+.+++.........++|+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 378999999999999999999988766545555653
No 468
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00057 Score=60.91 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+..
T Consensus 22 ~l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 22 AIHDVNTEFEQG----KYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred ceeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345554445555 78999999999999999999986543
No 469
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.34 E-value=0.0022 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++..|+|.+|+|||||...++-.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhh
Confidence 89999999999999999998853
No 470
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.34 E-value=0.0007 Score=59.33 Aligned_cols=36 Identities=31% Similarity=0.739 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.
T Consensus 37 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 37 LKHVKAYIKPG----QKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred eeEEEEEEcCC----CEEEEECCCCCCHHHHHHHHHcccC
Confidence 44444444455 7899999999999999999998654
No 471
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.34 E-value=0.00041 Score=67.06 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||++.++....
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999997554
No 472
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.34 E-value=0.00027 Score=69.38 Aligned_cols=39 Identities=36% Similarity=0.692 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++....+.
T Consensus 330 ~l~~i~~~i~~G----~~~~ivG~sGsGKSTLl~ll~g~~~p~ 368 (569)
T PRK10789 330 ALENVNFTLKPG----QMLGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred cccCeeEEECCC----CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 344444444555 789999999999999999998765443
No 473
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0015 Score=57.16 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..
T Consensus 21 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 21 ALYDITISIPKN----RVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeeeEEEECCC----cEEEEECCCCCCHHHHHHHHhcc
Confidence 344444444455 78999999999999999999864
No 474
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0015 Score=57.14 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+...+.++ .+++|.|++|+|||||++.++..
T Consensus 21 l~~~s~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 21 LNSVSLDFYPN----EITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhcc
Confidence 44444444455 78999999999999999999864
No 475
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.34 E-value=0.00086 Score=60.04 Aligned_cols=36 Identities=31% Similarity=0.249 Sum_probs=30.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+++-|+|++|+||||||..++.........++|+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 488999999999999999999887766666677764
No 476
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.33 E-value=0.00078 Score=60.27 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=30.3
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
..+++.|+|++|+||||||..++.........++|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3489999999999999999998887766656666764
No 477
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00058 Score=60.76 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+..+ .+++|.|++|.|||||++.++....
T Consensus 21 ~l~~vs~~i~~G----e~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 21 ALKGININIKKG----EVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455555555555 7899999999999999999997543
No 478
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33 E-value=0.00053 Score=56.85 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=26.6
Q ss_pred EEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 111 IGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+.|.|++|+|||+|+.+++.........+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999887655555666664
No 479
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0033 Score=60.69 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=83.4
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCC
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRH 189 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 189 (373)
-|.++|++|+|||-||..++....-. |+. + . + -+++....+. +.......+.+.-.-
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-----fis-v---K---G-----PElL~KyIGa------SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-----FIS-V---K---G-----PELLSKYIGA------SEQNVRDLFERAQSA 759 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e---c---C-----HHHHHHHhcc------cHHHHHHHHHHhhcc
Confidence 48899999999999999988754322 221 1 0 0 1233333222 122233334444467
Q ss_pred CceEEEecccccHH-------------HHHHHhcCCCC--CCCCcEEEE-EeCChhh----HhhcCCCceEeCCCCCHhH
Q 017364 190 KKVLLVIDDVIELQ-------------QLESLAGKHDW--FGIGSRIFI-TSRDKHL----LMAHGVDEVYMHEHLNYDE 249 (373)
Q Consensus 190 ~~~LlvlDdv~~~~-------------~l~~l~~~~~~--~~~g~~ili-TtR~~~~----~~~~~~~~~~~l~~L~~~e 249 (373)
++++|.||.+++.. ...+++..+.- .-.|..|+. |||..-. +..-+.++.+.-+..++.|
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 89999999986522 34455544420 012555554 5554311 1112234555566778888
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364 250 ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA 285 (373)
Q Consensus 250 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 285 (373)
-.+.+.......... .....+.++.++.|..-|
T Consensus 840 Rl~il~~ls~s~~~~---~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKD---TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHhhccCCc---cccchHHHhhhcCCCchh
Confidence 888887665322111 122367788888888765
No 480
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.32 E-value=0.00064 Score=66.07 Aligned_cols=36 Identities=33% Similarity=0.627 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 15 ~l~~is~~i~~G----e~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNISFTIEEG----EVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhhcc
Confidence 345555455555 789999999999999999999875
No 481
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00059 Score=65.81 Aligned_cols=26 Identities=19% Similarity=0.569 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++....+
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p 300 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREK 300 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcC
Confidence 78999999999999999999976543
No 482
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0025 Score=57.89 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=27.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.++++|+|++|+||||++..++..+......+.++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999988765443344444
No 483
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00069 Score=60.01 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 17 ~l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 17 ALKGINFKAEKG----EMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444444555 7899999999999999999997543
No 484
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00051 Score=63.42 Aligned_cols=36 Identities=28% Similarity=0.550 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-..
T Consensus 35 l~~vsl~i~~G----e~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 35 VDDVSLTIYKG----EIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33344334444 7899999999999999999997543
No 485
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.32 E-value=0.00033 Score=69.01 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ ..++|+|++|+|||||++.++....+
T Consensus 351 l~~i~~~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 351 VFDVSFEAKAG----QTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred ccceeEEEcCC----CEEEEECCCCCCHHHHHHHHccCCCC
Confidence 44444444455 78999999999999999999876544
No 486
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00092 Score=59.68 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|.|||||++.++..+.+
T Consensus 23 L~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 23 LYDVNVSIPSG----SYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred eeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44444444555 78999999999999999999986543
No 487
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.0014 Score=58.35 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|.|++|+|||||++.++...
T Consensus 54 il~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 54 AVKKVNADILSK----YVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence 344444445555 789999999999999999999853
No 488
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00031 Score=55.03 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|+|++|+||||++..+++.++..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 568999999999999999999988766
No 489
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.31 E-value=0.012 Score=55.15 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.5
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887654
No 490
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00024 Score=68.47 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....+
T Consensus 13 il~~vs~~i~~G----e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (491)
T PRK10982 13 ALDNVNLKVRPH----SIHALMGENGAGKSTLLKCLFGIYQK 50 (491)
T ss_pred eeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 344454445555 78999999999999999999986543
No 491
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0008 Score=55.02 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
+.+.++|.+|+||||+|++++..+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5688999999999999999999877653
No 492
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.31 E-value=0.00083 Score=59.51 Aligned_cols=39 Identities=31% Similarity=0.525 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++..+.+.
T Consensus 52 vL~~vs~~i~~G----e~~~liG~NGsGKSTLl~~I~Gl~~p~ 90 (282)
T cd03291 52 VLKNINLKIEKG----EMLAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred ceeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344444444455 789999999999999999999876544
No 493
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0017 Score=57.48 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+...+.++ .+++|.|++|+|||||++.++....
T Consensus 40 il~~vs~~i~~G----e~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 40 ALFDISMRIPKN----RVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EeeeEEEEEcCC----CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345554445555 7899999999999999999987644
No 494
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.0016 Score=60.60 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.+...+.+
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 78999999999999999999986543
No 495
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.30 E-value=0.0012 Score=60.52 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.....
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999985443
No 496
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.00028 Score=68.15 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 19 il~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~ 55 (501)
T PRK11288 19 ALDDISFDCRAG----QVHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred EEeeeeEEEeCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345555445555 7899999999999999999997544
No 497
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.30 E-value=0.00026 Score=66.24 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=40.7
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999999988877 45999999999999999999987643
No 498
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00058 Score=59.65 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.-.+.++ .+++|.|++|+|||||++.++....
T Consensus 19 ~l~~~sl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 19 ALHGISLDFEEK----ELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhhccc
Confidence 344444444455 7899999999999999999998654
No 499
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.00033 Score=67.68 Aligned_cols=38 Identities=29% Similarity=0.565 Sum_probs=31.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.+...+.+| .+|+++||+|.||||+|..+.+-+.+
T Consensus 483 Vlk~lsfti~pG----e~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 483 VLKNLSFTIRPG----EVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred hhcCceeeeCCC----CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 577777777777 78999999999999999888775443
No 500
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.29 E-value=0.0098 Score=57.62 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=34.6
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..++|....++.+...+..-......|.|+|.+|+||+.+|+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 46899888777777666532222255889999999999999996543
Done!