Query 017364
Match_columns 373
No_of_seqs 301 out of 2674
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.1E-40 1.7E-44 317.3 19.3 274 88-373 131-442 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-36 1.4E-40 317.3 19.0 281 81-373 120-423 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 8.2E-35 2.8E-39 284.5 19.7 279 81-373 120-423 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.6E-34 5.4E-39 284.9 17.8 261 85-373 128-416 (1221)
5 2qen_A Walker-type ATPase; unk 99.8 3.9E-18 1.3E-22 155.4 21.5 270 82-373 9-329 (350)
6 2fna_A Conserved hypothetical 99.8 1.1E-17 3.8E-22 152.8 18.8 265 82-373 10-337 (357)
7 1w5s_A Origin recognition comp 99.8 5.9E-17 2E-21 151.0 22.9 250 83-342 20-321 (412)
8 2qby_B CDC6 homolog 3, cell di 99.7 3.9E-15 1.3E-19 137.4 26.0 243 84-340 19-295 (384)
9 2qby_A CDC6 homolog 1, cell di 99.7 5.1E-15 1.7E-19 136.5 18.5 248 83-341 18-298 (386)
10 1fnn_A CDC6P, cell division co 99.6 1.8E-14 6.2E-19 133.1 21.4 248 84-342 16-301 (389)
11 2v1u_A Cell division control p 99.6 1.8E-14 6.3E-19 132.8 20.5 249 83-342 17-303 (387)
12 3jrn_A AT1G72930 protein; TIR 99.6 2.2E-16 7.5E-21 126.1 4.5 78 1-81 97-174 (176)
13 1njg_A DNA polymerase III subu 99.5 3.2E-13 1.1E-17 116.1 17.6 197 84-293 22-231 (250)
14 3ozi_A L6TR; plant TIR domain, 99.5 2.1E-15 7E-20 122.5 2.8 76 1-78 125-201 (204)
15 2chg_A Replication factor C sm 99.5 2.7E-12 9.3E-17 108.7 17.1 186 84-292 16-206 (226)
16 1sxj_B Activator 1 37 kDa subu 99.4 1E-11 3.5E-16 111.5 17.0 184 84-290 20-210 (323)
17 1iqp_A RFCS; clamp loader, ext 99.3 1.1E-10 3.8E-15 104.9 16.7 187 84-293 24-215 (327)
18 2chq_A Replication factor C sm 99.2 7.4E-10 2.5E-14 99.1 17.5 182 84-291 16-205 (319)
19 1jr3_A DNA polymerase III subu 99.2 7.9E-10 2.7E-14 101.3 15.9 195 84-291 15-222 (373)
20 1hqc_A RUVB; extended AAA-ATPa 99.1 2.1E-09 7E-14 96.5 17.2 179 83-293 10-214 (324)
21 1jbk_A CLPB protein; beta barr 99.0 6.8E-09 2.3E-13 85.3 14.7 49 84-134 21-69 (195)
22 3te6_A Regulatory protein SIR3 99.0 5.8E-09 2E-13 92.2 14.7 170 85-258 20-211 (318)
23 1d2n_A N-ethylmaleimide-sensit 99.0 4.7E-08 1.6E-12 85.3 20.1 169 85-282 33-229 (272)
24 1sxj_D Activator 1 41 kDa subu 99.0 3E-08 1E-12 90.0 19.2 195 83-290 35-235 (353)
25 3bos_A Putative DNA replicatio 99.0 1.5E-09 5.3E-14 92.8 9.8 173 85-293 28-220 (242)
26 3h4m_A Proteasome-activating n 99.0 3E-09 1E-13 93.6 11.0 183 83-291 15-232 (285)
27 3d8b_A Fidgetin-like protein 1 98.9 8.6E-08 2.9E-12 87.0 19.8 203 62-292 63-297 (357)
28 3uk6_A RUVB-like 2; hexameric 98.9 2.5E-08 8.4E-13 91.1 16.2 202 84-292 43-305 (368)
29 2z4s_A Chromosomal replication 98.9 3.1E-08 1.1E-12 92.4 16.2 202 85-308 105-332 (440)
30 3eie_A Vacuolar protein sortin 98.9 1.2E-07 4.2E-12 84.8 18.8 183 85-293 18-231 (322)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.9 1.2E-07 4E-12 82.2 17.9 184 85-292 6-224 (262)
32 1sxj_E Activator 1 40 kDa subu 98.9 2.6E-08 8.7E-13 90.5 14.0 197 84-291 13-238 (354)
33 1sxj_A Activator 1 95 kDa subu 98.9 1.3E-07 4.4E-12 90.2 19.1 188 84-291 38-253 (516)
34 2qp9_X Vacuolar protein sortin 98.9 2.9E-07 9.9E-12 83.4 20.0 183 85-292 51-263 (355)
35 3pfi_A Holliday junction ATP-d 98.8 4.5E-08 1.6E-12 88.3 14.5 176 84-292 28-229 (338)
36 3pvs_A Replication-associated 98.8 5E-08 1.7E-12 90.9 14.7 180 83-292 24-217 (447)
37 1xwi_A SKD1 protein; VPS4B, AA 98.8 4.8E-07 1.7E-11 80.8 20.0 185 85-293 12-226 (322)
38 1l8q_A Chromosomal replication 98.8 3.6E-07 1.2E-11 81.8 18.8 180 85-289 11-207 (324)
39 2p65_A Hypothetical protein PF 98.8 6.2E-08 2.1E-12 79.1 12.2 49 84-134 21-69 (187)
40 1a5t_A Delta prime, HOLB; zinc 98.8 3.7E-07 1.3E-11 82.1 18.0 182 91-290 8-205 (334)
41 3vfd_A Spastin; ATPase, microt 98.8 2.5E-07 8.6E-12 85.1 16.9 184 84-292 114-328 (389)
42 1sxj_C Activator 1 40 kDa subu 98.8 6.2E-07 2.1E-11 80.8 19.1 183 84-289 24-211 (340)
43 3b9p_A CG5977-PA, isoform A; A 98.7 3.9E-07 1.3E-11 80.5 16.8 181 84-292 20-235 (297)
44 3syl_A Protein CBBX; photosynt 98.7 1.1E-07 3.9E-12 84.5 12.4 150 86-259 32-218 (309)
45 2zan_A Vacuolar protein sortin 98.7 8E-07 2.8E-11 83.0 18.5 186 84-293 133-348 (444)
46 3cf0_A Transitional endoplasmi 98.7 5E-07 1.7E-11 80.0 16.3 174 85-285 15-223 (301)
47 3u61_B DNA polymerase accessor 98.7 2E-07 6.7E-12 83.5 13.6 177 84-290 25-216 (324)
48 3pxg_A Negative regulator of g 98.6 5.9E-07 2E-11 84.5 15.0 147 84-258 179-338 (468)
49 3hu3_A Transitional endoplasmi 98.6 4.9E-07 1.7E-11 85.1 13.7 180 85-291 204-416 (489)
50 4b4t_J 26S protease regulatory 98.6 1.9E-06 6.6E-11 78.1 15.7 172 85-284 148-355 (405)
51 1lv7_A FTSH; alpha/beta domain 98.5 2.3E-06 7.8E-11 73.8 14.7 180 85-290 12-225 (257)
52 3n70_A Transport activator; si 98.5 2.1E-07 7.1E-12 72.9 6.9 47 86-132 2-48 (145)
53 1ofh_A ATP-dependent HSL prote 98.5 1.8E-06 6E-11 76.6 13.8 49 85-133 15-75 (310)
54 1r6b_X CLPA protein; AAA+, N-t 98.5 1.7E-06 5.7E-11 86.7 15.0 154 84-258 185-362 (758)
55 1qvr_A CLPB protein; coiled co 98.5 9.6E-07 3.3E-11 89.4 13.3 49 84-134 169-217 (854)
56 2gno_A DNA polymerase III, gam 98.5 1.3E-06 4.5E-11 77.1 12.2 146 89-258 1-152 (305)
57 2ce7_A Cell division protein F 98.5 4.4E-06 1.5E-10 78.1 16.2 173 85-283 16-221 (476)
58 4b4t_H 26S protease regulatory 98.5 4.5E-06 1.5E-10 76.8 15.6 171 86-283 210-415 (467)
59 1in4_A RUVB, holliday junction 98.5 2.8E-05 9.4E-10 69.8 20.5 175 84-291 24-224 (334)
60 3ec2_A DNA replication protein 98.4 6.7E-07 2.3E-11 72.7 8.7 45 90-134 19-64 (180)
61 4b4t_L 26S protease subunit RP 98.4 2.4E-06 8.2E-11 78.7 13.2 172 85-284 181-388 (437)
62 4b4t_K 26S protease regulatory 98.4 4E-06 1.4E-10 77.1 13.9 171 85-283 172-379 (428)
63 4fcw_A Chaperone protein CLPB; 98.4 3.1E-06 1.1E-10 75.1 12.6 51 85-135 17-74 (311)
64 3pxi_A Negative regulator of g 98.4 5.1E-06 1.7E-10 83.1 14.8 145 85-258 180-338 (758)
65 4b4t_M 26S protease regulatory 98.3 2.8E-06 9.7E-11 78.1 11.4 170 85-283 181-387 (434)
66 2r62_A Cell division protease 98.3 7.7E-07 2.6E-11 77.3 7.3 151 85-258 11-196 (268)
67 2kjq_A DNAA-related protein; s 98.3 6.2E-07 2.1E-11 70.4 5.7 34 109-142 37-70 (149)
68 4b4t_I 26S protease regulatory 98.3 7.8E-06 2.7E-10 74.5 13.3 170 86-283 183-388 (437)
69 2bjv_A PSP operon transcriptio 98.3 2.5E-06 8.5E-11 74.0 9.7 49 85-133 6-54 (265)
70 1ojl_A Transcriptional regulat 98.3 6.2E-06 2.1E-10 72.9 12.3 49 85-133 2-50 (304)
71 2c9o_A RUVB-like 1; hexameric 98.2 2.2E-05 7.5E-10 73.6 14.0 50 84-133 36-88 (456)
72 3pxi_A Negative regulator of g 98.1 1.3E-05 4.6E-10 80.0 12.0 148 85-258 491-675 (758)
73 3co5_A Putative two-component 98.1 6.3E-07 2.2E-11 69.9 1.3 48 85-132 4-51 (143)
74 3cf2_A TER ATPase, transitiona 98.1 2.4E-05 8.1E-10 77.5 12.6 173 85-285 204-409 (806)
75 1ixz_A ATP-dependent metallopr 98.1 0.00011 3.6E-09 63.1 15.2 150 85-258 16-199 (254)
76 1iy2_A ATP-dependent metallopr 98.1 6.7E-05 2.3E-09 65.4 14.0 173 84-283 39-245 (278)
77 3t15_A Ribulose bisphosphate c 98.0 3.5E-05 1.2E-09 67.7 11.2 27 107-133 35-61 (293)
78 2dhr_A FTSH; AAA+ protein, hex 98.0 0.00013 4.5E-09 68.6 15.4 170 84-283 30-236 (499)
79 2x8a_A Nuclear valosin-contain 97.9 0.00012 4E-09 63.6 12.5 124 111-258 47-191 (274)
80 2cvh_A DNA repair and recombin 97.9 1.7E-05 5.8E-10 66.4 7.0 32 109-143 21-52 (220)
81 2nq2_C Hypothetical ABC transp 97.9 7.7E-06 2.7E-10 70.1 4.8 27 109-135 32-58 (253)
82 2cbz_A Multidrug resistance-as 97.9 1.6E-05 5.6E-10 67.4 6.6 27 109-135 32-58 (237)
83 1um8_A ATP-dependent CLP prote 97.9 0.00016 5.5E-09 65.9 13.6 25 109-133 73-97 (376)
84 1ypw_A Transitional endoplasmi 97.9 0.00013 4.3E-09 73.2 13.7 150 85-258 204-385 (806)
85 1r6b_X CLPA protein; AAA+, N-t 97.9 6.9E-05 2.4E-09 74.9 11.6 48 85-132 458-512 (758)
86 2pze_A Cystic fibrosis transme 97.9 7.7E-05 2.6E-09 62.9 9.7 27 109-135 35-61 (229)
87 3m6a_A ATP-dependent protease 97.8 0.00011 3.7E-09 70.3 11.8 52 85-136 81-136 (543)
88 3jvv_A Twitching mobility prot 97.8 2.7E-05 9.3E-10 70.1 7.2 110 109-231 124-234 (356)
89 1ji0_A ABC transporter; ATP bi 97.8 2.2E-05 7.6E-10 66.8 6.0 25 109-133 33-57 (240)
90 4gp7_A Metallophosphoesterase; 97.8 5.4E-06 1.9E-10 66.7 1.7 20 109-128 10-29 (171)
91 2olj_A Amino acid ABC transpor 97.8 2E-05 7E-10 67.8 5.4 26 109-134 51-76 (263)
92 2eyu_A Twitching motility prot 97.8 7.7E-05 2.6E-09 64.2 8.9 107 109-230 26-135 (261)
93 1vpl_A ABC transporter, ATP-bi 97.8 4.7E-05 1.6E-09 65.3 7.3 26 109-134 42-67 (256)
94 1ye8_A Protein THEP1, hypothet 97.8 0.00042 1.4E-08 55.9 12.6 24 110-133 2-25 (178)
95 2pcj_A ABC transporter, lipopr 97.8 3.4E-05 1.2E-09 64.8 5.9 25 109-133 31-55 (224)
96 3tif_A Uncharacterized ABC tra 97.7 4E-05 1.4E-09 64.9 6.3 26 109-134 32-57 (235)
97 2w0m_A SSO2452; RECA, SSPF, un 97.7 4E-05 1.4E-09 64.7 6.3 34 109-142 24-57 (235)
98 2qi9_C Vitamin B12 import ATP- 97.7 3.3E-05 1.1E-09 65.9 5.6 27 109-135 27-53 (249)
99 4g1u_C Hemin import ATP-bindin 97.7 2.6E-05 8.8E-10 67.4 4.8 37 94-134 27-63 (266)
100 4a74_A DNA repair and recombin 97.7 3.3E-05 1.1E-09 65.1 5.2 26 109-134 26-51 (231)
101 1qvr_A CLPB protein; coiled co 97.7 0.00018 6.1E-09 72.8 11.1 50 85-134 558-614 (854)
102 2pjz_A Hypothetical protein ST 97.7 9.9E-05 3.4E-09 63.5 7.7 26 109-135 31-56 (263)
103 3tui_C Methionine import ATP-b 97.7 7.8E-05 2.7E-09 66.9 7.2 37 94-134 44-80 (366)
104 2yz2_A Putative ABC transporte 97.7 8E-05 2.7E-09 64.3 7.0 25 109-133 34-58 (266)
105 1b0u_A Histidine permease; ABC 97.6 4.5E-05 1.5E-09 65.8 5.2 26 109-134 33-58 (262)
106 2ehv_A Hypothetical protein PH 97.6 3.2E-05 1.1E-09 66.1 4.1 23 109-131 31-53 (251)
107 2zu0_C Probable ATP-dependent 97.6 0.00025 8.7E-09 61.2 9.6 34 94-131 36-69 (267)
108 3gfo_A Cobalt import ATP-bindi 97.6 3.1E-05 1.1E-09 67.1 3.3 37 94-134 24-60 (275)
109 2ixe_A Antigen peptide transpo 97.6 5.1E-05 1.8E-09 65.7 4.6 26 109-134 46-71 (271)
110 2bbs_A Cystic fibrosis transme 97.6 0.00011 3.7E-09 64.2 6.6 27 109-135 65-91 (290)
111 1z47_A CYSA, putative ABC-tran 97.6 0.00011 3.9E-09 65.8 6.8 26 109-134 42-67 (355)
112 1v43_A Sugar-binding transport 97.5 6.1E-05 2.1E-09 68.0 4.8 25 109-133 38-62 (372)
113 2yyz_A Sugar ABC transporter, 97.5 5.3E-05 1.8E-09 68.1 4.2 25 109-133 30-54 (359)
114 2w58_A DNAI, primosome compone 97.5 0.00014 4.8E-09 59.9 6.4 58 85-142 25-88 (202)
115 3bk7_A ABC transporter ATP-bin 97.5 7.7E-05 2.6E-09 72.0 5.3 131 109-242 383-545 (607)
116 3fvq_A Fe(3+) IONS import ATP- 97.5 7.7E-05 2.6E-09 66.9 4.6 26 109-134 31-56 (359)
117 2d2e_A SUFC protein; ABC-ATPas 97.5 0.00022 7.5E-09 61.0 7.3 23 109-131 30-52 (250)
118 2it1_A 362AA long hypothetical 97.5 0.00016 5.3E-09 65.1 6.5 25 109-133 30-54 (362)
119 3d31_A Sulfate/molybdate ABC t 97.5 7.5E-05 2.6E-09 66.9 4.4 26 109-134 27-52 (348)
120 2pt7_A CAG-ALFA; ATPase, prote 97.5 0.00022 7.5E-09 63.6 7.4 118 93-230 160-277 (330)
121 3j16_B RLI1P; ribosome recycli 97.5 0.00013 4.5E-09 70.4 6.1 26 109-134 104-129 (608)
122 3rlf_A Maltose/maltodextrin im 97.4 0.00011 3.6E-09 66.5 4.8 26 109-134 30-55 (381)
123 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00015 5E-09 63.6 5.5 23 109-131 124-146 (331)
124 2ewv_A Twitching motility prot 97.4 0.00032 1.1E-08 63.7 7.9 109 109-230 137-246 (372)
125 3nh6_A ATP-binding cassette SU 97.4 3.5E-05 1.2E-09 67.8 1.1 26 109-134 81-106 (306)
126 1oxx_K GLCV, glucose, ABC tran 97.4 0.00034 1.2E-08 62.8 7.5 25 109-133 32-56 (353)
127 1rz3_A Hypothetical protein rb 97.4 0.00031 1.1E-08 57.9 6.8 46 90-135 3-49 (201)
128 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00016 5.4E-09 69.0 5.5 132 109-242 313-475 (538)
129 3e70_C DPA, signal recognition 97.4 0.00044 1.5E-08 61.4 8.0 36 107-142 128-163 (328)
130 3hr8_A Protein RECA; alpha and 97.4 0.00023 7.9E-09 63.8 6.0 35 109-143 62-96 (356)
131 3c8u_A Fructokinase; YP_612366 97.4 0.0002 6.8E-09 59.4 5.3 42 93-134 7-48 (208)
132 3ozx_A RNAse L inhibitor; ATP 97.4 0.00026 8.8E-09 67.4 6.7 26 109-134 26-51 (538)
133 2r44_A Uncharacterized protein 97.4 0.00012 4.2E-09 65.4 4.2 47 85-135 27-73 (331)
134 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00016 5.6E-09 68.9 5.3 26 109-134 48-73 (538)
135 3b5x_A Lipid A export ATP-bind 97.3 0.00025 8.6E-09 68.5 6.0 39 93-135 358-396 (582)
136 1g29_1 MALK, maltose transport 97.3 0.00028 9.7E-09 63.8 5.9 25 109-133 30-54 (372)
137 1htw_A HI0065; nucleotide-bind 97.3 0.00018 6E-09 56.8 3.9 24 109-132 34-57 (158)
138 1g5t_A COB(I)alamin adenosyltr 97.3 0.00048 1.6E-08 55.9 6.4 117 109-229 29-164 (196)
139 2b8t_A Thymidine kinase; deoxy 97.3 0.0013 4.4E-08 54.9 9.1 109 109-228 13-126 (223)
140 2px0_A Flagellar biosynthesis 97.2 0.0033 1.1E-07 55.0 11.8 27 108-134 105-131 (296)
141 3j16_B RLI1P; ribosome recycli 97.2 0.00058 2E-08 65.9 7.4 133 109-243 379-542 (608)
142 3bk7_A ABC transporter ATP-bin 97.2 0.00026 8.9E-09 68.4 4.9 26 109-134 118-143 (607)
143 3gd7_A Fusion complex of cysti 97.2 0.00052 1.8E-08 62.4 6.6 35 94-132 37-71 (390)
144 1tf7_A KAIC; homohexamer, hexa 97.2 0.00052 1.8E-08 65.4 6.6 34 109-142 282-315 (525)
145 3cf2_A TER ATPase, transitiona 97.2 0.00081 2.8E-08 66.7 8.1 173 85-283 477-683 (806)
146 3ozx_A RNAse L inhibitor; ATP 97.2 0.0003 1E-08 66.9 4.9 27 109-135 295-321 (538)
147 1jr3_D DNA polymerase III, del 97.2 0.015 5.2E-07 51.9 16.0 155 108-290 18-185 (343)
148 3bh0_A DNAB-like replicative h 97.2 0.0025 8.7E-08 56.3 10.5 34 109-142 69-102 (315)
149 3a00_A Guanylate kinase, GMP k 97.1 0.00021 7.3E-09 58.1 3.2 30 109-138 2-31 (186)
150 1nlf_A Regulatory protein REPA 97.1 0.0021 7.1E-08 55.8 9.7 26 109-134 31-56 (279)
151 1ypw_A Transitional endoplasmi 97.1 0.00015 5.2E-09 72.6 2.6 151 85-258 477-661 (806)
152 2jeo_A Uridine-cytidine kinase 97.1 0.00031 1E-08 59.9 3.8 40 89-132 10-49 (245)
153 1n0w_A DNA repair protein RAD5 97.1 0.00075 2.5E-08 57.2 6.2 24 109-132 25-48 (243)
154 3hws_A ATP-dependent CLP prote 97.1 0.00048 1.6E-08 62.4 5.0 48 86-133 16-76 (363)
155 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00031 1.1E-08 66.1 3.8 45 85-133 22-66 (500)
156 2q6t_A DNAB replication FORK h 97.1 0.007 2.4E-07 56.3 12.9 53 108-166 200-253 (444)
157 2zr9_A Protein RECA, recombina 97.0 0.00064 2.2E-08 61.1 5.6 35 109-143 62-96 (349)
158 1odf_A YGR205W, hypothetical 3 97.0 0.00079 2.7E-08 58.8 6.0 31 104-134 27-57 (290)
159 1v5w_A DMC1, meiotic recombina 97.0 0.0025 8.6E-08 57.1 9.2 36 97-132 111-146 (343)
160 1qhx_A CPT, protein (chloramph 97.0 0.00032 1.1E-08 56.4 3.0 25 109-133 4-28 (178)
161 3vaa_A Shikimate kinase, SK; s 97.0 0.00041 1.4E-08 57.0 3.7 25 109-133 26-50 (199)
162 1kgd_A CASK, peripheral plasma 97.0 0.00037 1.3E-08 56.3 3.2 25 109-133 6-30 (180)
163 1zu4_A FTSY; GTPase, signal re 97.0 0.0028 9.5E-08 56.1 9.0 36 107-142 104-139 (320)
164 3uie_A Adenylyl-sulfate kinase 97.0 0.0012 4.2E-08 54.2 6.2 25 109-133 26-50 (200)
165 3io5_A Recombination and repai 96.9 0.0012 4.1E-08 57.7 6.1 34 110-143 30-65 (333)
166 1vma_A Cell division protein F 96.9 0.0014 4.8E-08 57.6 6.7 36 107-142 103-138 (306)
167 1z6g_A Guanylate kinase; struc 96.9 0.00035 1.2E-08 58.4 2.7 35 94-132 13-47 (218)
168 3kl4_A SRP54, signal recogniti 96.9 0.0034 1.2E-07 57.7 9.4 35 108-142 97-131 (433)
169 2yvu_A Probable adenylyl-sulfa 96.9 0.00082 2.8E-08 54.5 4.8 35 108-142 13-47 (186)
170 1ex7_A Guanylate kinase; subst 96.9 0.00033 1.1E-08 56.8 2.3 28 109-136 2-29 (186)
171 1rj9_A FTSY, signal recognitio 96.9 0.00087 3E-08 58.9 5.1 35 107-141 101-135 (304)
172 3kb2_A SPBC2 prophage-derived 96.9 0.00051 1.7E-08 54.8 3.4 25 109-133 2-26 (173)
173 2qgz_A Helicase loader, putati 96.9 0.0013 4.6E-08 57.9 6.2 51 92-142 135-187 (308)
174 2iw3_A Elongation factor 3A; a 96.9 0.0013 4.6E-08 66.3 6.8 22 109-130 462-483 (986)
175 4a1f_A DNAB helicase, replicat 96.9 0.0044 1.5E-07 55.1 9.5 34 109-142 47-80 (338)
176 1j8m_F SRP54, signal recogniti 96.9 0.012 4.1E-07 51.4 12.1 35 108-142 98-132 (297)
177 1zp6_A Hypothetical protein AT 96.9 0.00057 1.9E-08 55.6 3.4 23 109-131 10-32 (191)
178 2r6a_A DNAB helicase, replicat 96.9 0.0054 1.8E-07 57.2 10.4 34 109-142 204-238 (454)
179 1kag_A SKI, shikimate kinase I 96.8 0.00046 1.6E-08 55.2 2.6 25 109-133 5-29 (173)
180 3tau_A Guanylate kinase, GMP k 96.8 0.00049 1.7E-08 57.0 2.8 27 108-134 8-34 (208)
181 3qf4_A ABC transporter, ATP-bi 96.8 0.00064 2.2E-08 65.6 4.0 26 109-134 370-395 (587)
182 3tqc_A Pantothenate kinase; bi 96.8 0.0012 4E-08 58.4 5.4 47 87-133 69-117 (321)
183 3tlx_A Adenylate kinase 2; str 96.8 0.001 3.6E-08 56.5 4.9 40 93-132 14-53 (243)
184 3b85_A Phosphate starvation-in 96.8 0.0011 3.6E-08 54.9 4.7 26 109-135 23-48 (208)
185 1nks_A Adenylate kinase; therm 96.8 0.0011 3.9E-08 53.8 4.9 27 109-135 2-28 (194)
186 3qf4_B Uncharacterized ABC tra 96.8 0.00061 2.1E-08 66.0 3.7 27 109-135 382-408 (598)
187 3b9q_A Chloroplast SRP recepto 96.8 0.0011 3.6E-08 58.3 5.0 33 108-140 100-132 (302)
188 3asz_A Uridine kinase; cytidin 96.8 0.00081 2.8E-08 55.7 4.0 27 108-134 6-32 (211)
189 3tr0_A Guanylate kinase, GMP k 96.8 0.00061 2.1E-08 56.1 3.2 24 109-132 8-31 (205)
190 1g8p_A Magnesium-chelatase 38 96.8 0.00072 2.5E-08 60.7 3.8 47 85-133 24-70 (350)
191 4eun_A Thermoresistant glucoki 96.8 0.0007 2.4E-08 55.6 3.4 24 109-132 30-53 (200)
192 3k1j_A LON protease, ATP-depen 96.8 0.001 3.4E-08 64.6 5.0 49 83-135 39-87 (604)
193 1cr0_A DNA primase/helicase; R 96.8 0.001 3.5E-08 58.4 4.5 46 93-142 24-70 (296)
194 1knq_A Gluconate kinase; ALFA/ 96.8 0.0011 3.7E-08 53.1 4.3 25 108-132 8-32 (175)
195 1znw_A Guanylate kinase, GMP k 96.8 0.00071 2.4E-08 56.0 3.3 25 109-133 21-45 (207)
196 3trf_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 54.6 3.3 25 109-133 6-30 (185)
197 1ly1_A Polynucleotide kinase; 96.8 0.00078 2.7E-08 54.1 3.4 22 109-130 3-24 (181)
198 1u94_A RECA protein, recombina 96.8 0.0013 4.4E-08 59.1 5.1 35 109-143 64-98 (356)
199 1xp8_A RECA protein, recombina 96.8 0.0015 5.2E-08 58.9 5.5 35 109-143 75-109 (366)
200 2z43_A DNA repair and recombin 96.8 0.0021 7.2E-08 57.1 6.4 25 109-133 108-132 (324)
201 3dzd_A Transcriptional regulat 96.8 0.02 6.7E-07 51.8 12.9 49 85-133 129-177 (368)
202 2onk_A Molybdate/tungstate ABC 96.8 0.00053 1.8E-08 58.1 2.4 26 109-134 25-50 (240)
203 1lvg_A Guanylate kinase, GMP k 96.7 0.00068 2.3E-08 55.6 2.8 25 109-133 5-29 (198)
204 3t61_A Gluconokinase; PSI-biol 96.7 0.00066 2.3E-08 55.9 2.7 24 109-132 19-42 (202)
205 2bdt_A BH3686; alpha-beta prot 96.7 0.00089 3.1E-08 54.4 3.4 22 109-130 3-24 (189)
206 1xjc_A MOBB protein homolog; s 96.7 0.0015 5E-08 51.9 4.4 28 108-135 4-31 (169)
207 2yhs_A FTSY, cell division pro 96.7 0.0025 8.4E-08 59.4 6.4 34 108-141 293-326 (503)
208 2rhm_A Putative kinase; P-loop 96.7 0.0012 4E-08 53.7 3.9 25 108-132 5-29 (193)
209 3ney_A 55 kDa erythrocyte memb 96.7 0.00089 3E-08 54.7 3.0 26 108-133 19-44 (197)
210 3lw7_A Adenylate kinase relate 96.7 0.00078 2.7E-08 53.7 2.7 20 109-128 2-21 (179)
211 2og2_A Putative signal recogni 96.7 0.0016 5.5E-08 58.5 4.9 33 108-140 157-189 (359)
212 2ze6_A Isopentenyl transferase 96.7 0.0011 3.7E-08 56.7 3.7 25 109-133 2-26 (253)
213 1sgw_A Putative ABC transporte 96.6 0.0004 1.4E-08 57.7 0.8 26 109-134 36-61 (214)
214 3nwj_A ATSK2; P loop, shikimat 96.6 0.0011 3.9E-08 56.4 3.7 39 91-133 32-73 (250)
215 1mv5_A LMRA, multidrug resista 96.6 0.00068 2.3E-08 57.6 2.2 25 109-133 29-53 (243)
216 2bbw_A Adenylate kinase 4, AK4 96.6 0.0011 3.6E-08 56.5 3.4 25 108-132 27-51 (246)
217 2v9p_A Replication protein E1; 96.6 0.0014 4.7E-08 57.4 4.1 36 93-132 115-150 (305)
218 1g6h_A High-affinity branched- 96.6 0.00062 2.1E-08 58.4 1.8 37 94-134 23-59 (257)
219 3aez_A Pantothenate kinase; tr 96.6 0.0014 4.8E-08 57.8 4.1 28 107-134 89-116 (312)
220 1sq5_A Pantothenate kinase; P- 96.6 0.0032 1.1E-07 55.5 6.4 27 107-133 79-105 (308)
221 3dm5_A SRP54, signal recogniti 96.6 0.01 3.4E-07 54.7 9.8 34 108-141 100-133 (443)
222 4a82_A Cystic fibrosis transme 96.6 0.0006 2E-08 65.8 1.8 26 109-134 368-393 (578)
223 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.4E-08 53.4 3.6 26 109-134 4-29 (192)
224 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.1E-08 54.4 3.4 25 109-133 7-31 (207)
225 1s96_A Guanylate kinase, GMP k 96.6 0.0011 3.7E-08 55.4 3.1 25 109-133 17-41 (219)
226 2ff7_A Alpha-hemolysin translo 96.6 0.00061 2.1E-08 58.0 1.4 26 109-134 36-61 (247)
227 3bgw_A DNAB-like replicative h 96.6 0.0087 3E-07 55.5 9.3 35 108-142 197-231 (444)
228 1tev_A UMP-CMP kinase; ploop, 96.5 0.0015 5.3E-08 53.1 3.7 24 109-132 4-27 (196)
229 2dr3_A UPF0273 protein PH0284; 96.5 0.0015 5E-08 55.4 3.7 35 109-143 24-58 (247)
230 1cke_A CK, MSSA, protein (cyti 96.5 0.0014 4.7E-08 54.9 3.5 24 109-132 6-29 (227)
231 3cm0_A Adenylate kinase; ATP-b 96.5 0.0017 5.8E-08 52.4 4.0 24 109-132 5-28 (186)
232 1gvn_B Zeta; postsegregational 96.5 0.003 1E-07 55.1 5.7 26 107-132 32-57 (287)
233 2i3b_A HCR-ntpase, human cance 96.5 0.0012 4.2E-08 53.6 3.0 25 109-133 2-26 (189)
234 2r2a_A Uncharacterized protein 96.5 0.0097 3.3E-07 48.6 8.4 23 109-131 6-28 (199)
235 3iij_A Coilin-interacting nucl 96.5 0.0011 3.7E-08 53.4 2.7 24 109-132 12-35 (180)
236 1via_A Shikimate kinase; struc 96.5 0.0014 4.8E-08 52.5 3.3 24 110-133 6-29 (175)
237 1zuh_A Shikimate kinase; alpha 96.5 0.0015 5.1E-08 51.9 3.4 26 108-133 7-32 (168)
238 2ihy_A ABC transporter, ATP-bi 96.5 0.00077 2.6E-08 58.5 1.8 37 94-134 37-73 (279)
239 2c95_A Adenylate kinase 1; tra 96.5 0.0021 7E-08 52.4 4.3 24 109-132 10-33 (196)
240 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.9E-08 54.5 2.8 25 109-133 13-37 (204)
241 2p5t_B PEZT; postsegregational 96.5 0.0028 9.6E-08 54.1 5.3 26 108-133 32-57 (253)
242 3umf_A Adenylate kinase; rossm 96.5 0.0019 6.4E-08 53.7 4.0 27 106-132 27-53 (217)
243 1tue_A Replication protein E1; 96.5 0.0028 9.4E-08 51.7 4.8 40 93-133 44-83 (212)
244 3ice_A Transcription terminati 96.5 0.0016 5.6E-08 58.4 3.8 27 109-135 175-201 (422)
245 1ls1_A Signal recognition part 96.5 0.0085 2.9E-07 52.4 8.3 35 108-142 98-132 (295)
246 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0045 1.5E-07 57.2 6.7 32 109-140 152-183 (473)
247 1q57_A DNA primase/helicase; d 96.5 0.011 3.9E-07 55.8 9.8 35 108-142 242-277 (503)
248 2qm8_A GTPase/ATPase; G protei 96.5 0.0025 8.4E-08 57.0 4.9 35 108-142 55-89 (337)
249 2plr_A DTMP kinase, probable t 96.5 0.0024 8.4E-08 52.6 4.6 27 109-135 5-31 (213)
250 1nn5_A Similar to deoxythymidy 96.5 0.0025 8.4E-08 52.8 4.6 27 109-135 10-36 (215)
251 2if2_A Dephospho-COA kinase; a 96.5 0.0014 4.9E-08 53.8 3.2 22 109-130 2-23 (204)
252 1ukz_A Uridylate kinase; trans 96.5 0.0018 6.2E-08 53.2 3.7 25 108-132 15-39 (203)
253 2ga8_A Hypothetical 39.9 kDa p 96.5 0.002 6.7E-08 57.4 4.1 46 91-136 5-52 (359)
254 2bwj_A Adenylate kinase 5; pho 96.5 0.0016 5.4E-08 53.3 3.3 25 109-133 13-37 (199)
255 1uj2_A Uridine-cytidine kinase 96.5 0.0017 5.9E-08 55.4 3.6 27 107-133 21-47 (252)
256 2jaq_A Deoxyguanosine kinase; 96.5 0.0017 5.8E-08 53.3 3.5 24 110-133 2-25 (205)
257 3p32_A Probable GTPase RV1496/ 96.5 0.0057 2E-07 55.1 7.2 42 94-135 65-106 (355)
258 2iyv_A Shikimate kinase, SK; t 96.5 0.0012 4.2E-08 53.2 2.6 25 109-133 3-27 (184)
259 3llm_A ATP-dependent RNA helic 96.4 0.023 8E-07 47.7 10.6 33 94-130 66-98 (235)
260 1y63_A LMAJ004144AAA protein; 96.4 0.0019 6.4E-08 52.3 3.5 24 108-131 10-33 (184)
261 2pez_A Bifunctional 3'-phospho 96.4 0.0034 1.2E-07 50.4 5.0 27 108-134 5-31 (179)
262 1aky_A Adenylate kinase; ATP:A 96.4 0.0018 6.3E-08 53.9 3.5 26 108-133 4-29 (220)
263 2vli_A Antibiotic resistance p 96.4 0.0013 4.6E-08 52.9 2.6 25 109-133 6-30 (183)
264 1qf9_A UMP/CMP kinase, protein 96.4 0.0021 7.2E-08 52.1 3.7 26 108-133 6-31 (194)
265 3ux8_A Excinuclease ABC, A sub 96.4 0.0026 8.9E-08 62.5 5.0 57 182-242 212-276 (670)
266 3sop_A Neuronal-specific septi 96.4 0.0019 6.3E-08 55.8 3.4 26 109-134 3-28 (270)
267 1ny5_A Transcriptional regulat 96.4 0.091 3.1E-06 47.7 14.9 47 86-132 138-184 (387)
268 2f1r_A Molybdopterin-guanine d 96.4 0.0014 4.8E-08 52.3 2.4 27 109-135 3-29 (171)
269 1e6c_A Shikimate kinase; phosp 96.4 0.0016 5.5E-08 51.9 2.8 25 109-133 3-27 (173)
270 1uf9_A TT1252 protein; P-loop, 96.4 0.0022 7.6E-08 52.5 3.7 25 107-131 7-31 (203)
271 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.1E-08 52.4 3.8 26 108-133 20-45 (201)
272 2gza_A Type IV secretion syste 96.3 0.0023 7.8E-08 57.8 3.8 44 95-143 166-209 (361)
273 1gtv_A TMK, thymidylate kinase 96.3 0.0018 6.1E-08 53.6 3.0 25 110-134 2-26 (214)
274 2hf9_A Probable hydrogenase ni 96.3 0.0077 2.6E-07 50.2 6.9 41 93-135 25-65 (226)
275 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.003 1E-07 54.2 4.4 26 108-133 4-29 (260)
276 1jjv_A Dephospho-COA kinase; P 96.3 0.0021 7E-08 53.0 3.2 22 109-130 3-24 (206)
277 4e22_A Cytidylate kinase; P-lo 96.3 0.0021 7.1E-08 54.9 3.3 25 109-133 28-52 (252)
278 2qt1_A Nicotinamide riboside k 96.3 0.002 7E-08 53.1 3.1 25 108-132 21-45 (207)
279 2i1q_A DNA repair and recombin 96.3 0.0055 1.9E-07 54.3 6.1 24 109-132 99-122 (322)
280 1g41_A Heat shock protein HSLU 96.3 0.0028 9.7E-08 58.4 4.3 51 85-135 15-77 (444)
281 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.4E-08 50.5 3.5 24 110-133 2-25 (168)
282 3fb4_A Adenylate kinase; psych 96.3 0.0024 8.1E-08 53.0 3.5 23 110-132 2-24 (216)
283 2wwf_A Thymidilate kinase, put 96.3 0.0025 8.5E-08 52.6 3.5 27 108-134 10-36 (212)
284 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 51.6 3.5 25 110-134 2-26 (195)
285 2z0h_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 51.3 4.0 26 110-135 2-27 (197)
286 3lnc_A Guanylate kinase, GMP k 96.2 0.0014 4.8E-08 55.1 1.8 24 109-132 28-52 (231)
287 2wsm_A Hydrogenase expression/ 96.2 0.006 2E-07 50.7 5.7 42 92-135 16-57 (221)
288 3fwy_A Light-independent proto 96.2 0.0044 1.5E-07 54.7 5.0 36 107-142 47-82 (314)
289 1p9r_A General secretion pathw 96.2 0.0071 2.4E-07 55.5 6.6 34 109-142 168-201 (418)
290 1np6_A Molybdopterin-guanine d 96.2 0.0041 1.4E-07 49.7 4.4 28 108-135 6-33 (174)
291 3dl0_A Adenylate kinase; phosp 96.2 0.0026 8.7E-08 52.9 3.1 23 110-132 2-24 (216)
292 1zak_A Adenylate kinase; ATP:A 96.2 0.0025 8.5E-08 53.2 3.0 25 109-133 6-30 (222)
293 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.7E-08 53.4 3.0 24 109-132 8-31 (227)
294 2ghi_A Transport protein; mult 96.2 0.0019 6.4E-08 55.5 2.1 25 109-133 47-71 (260)
295 1pzn_A RAD51, DNA repair and r 96.1 0.0059 2E-07 54.8 5.5 25 108-132 131-155 (349)
296 1svm_A Large T antigen; AAA+ f 96.1 0.0054 1.8E-07 55.5 5.1 26 107-132 168-193 (377)
297 2ffh_A Protein (FFH); SRP54, s 96.1 0.032 1.1E-06 51.2 10.1 35 107-141 97-131 (425)
298 2xxa_A Signal recognition part 96.1 0.024 8.2E-07 52.3 9.4 29 107-135 99-127 (433)
299 2j37_W Signal recognition part 96.1 0.054 1.8E-06 50.9 11.9 29 107-135 100-128 (504)
300 1m7g_A Adenylylsulfate kinase; 96.1 0.004 1.4E-07 51.5 3.8 25 109-133 26-50 (211)
301 2grj_A Dephospho-COA kinase; T 96.1 0.0037 1.3E-07 50.9 3.4 25 108-132 12-36 (192)
302 3be4_A Adenylate kinase; malar 96.0 0.0033 1.1E-07 52.3 3.1 24 109-132 6-29 (217)
303 3cr8_A Sulfate adenylyltranfer 96.0 0.0077 2.6E-07 57.3 5.8 28 109-136 370-397 (552)
304 2p67_A LAO/AO transport system 96.0 0.011 3.7E-07 52.9 6.5 35 106-140 54-88 (341)
305 3r20_A Cytidylate kinase; stru 96.0 0.0041 1.4E-07 52.2 3.5 25 109-133 10-34 (233)
306 3e1s_A Exodeoxyribonuclease V, 96.0 0.045 1.5E-06 52.5 11.1 32 109-140 205-236 (574)
307 1a7j_A Phosphoribulokinase; tr 96.0 0.0028 9.6E-08 55.3 2.6 26 108-133 5-30 (290)
308 1tq4_A IIGP1, interferon-induc 96.0 0.0021 7.2E-08 58.8 1.8 23 109-131 70-92 (413)
309 3sr0_A Adenylate kinase; phosp 96.0 0.0043 1.5E-07 51.1 3.5 23 110-132 2-24 (206)
310 1oix_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.7 3.2 25 108-132 29-53 (191)
311 1nij_A Hypothetical protein YJ 96.0 0.0036 1.2E-07 55.5 3.2 26 107-132 3-28 (318)
312 3cmu_A Protein RECA, recombina 95.9 0.0087 3E-07 64.8 6.4 35 109-143 1428-1462(2050)
313 2v54_A DTMP kinase, thymidylat 95.9 0.0039 1.3E-07 51.1 3.1 24 109-132 5-28 (204)
314 3d3q_A TRNA delta(2)-isopenten 95.9 0.0043 1.5E-07 55.0 3.5 25 109-133 8-32 (340)
315 3thx_A DNA mismatch repair pro 95.9 0.011 3.6E-07 59.9 6.7 22 108-129 662-683 (934)
316 1e4v_A Adenylate kinase; trans 95.9 0.0045 1.6E-07 51.3 3.5 23 110-132 2-24 (214)
317 3ake_A Cytidylate kinase; CMP 95.9 0.0046 1.6E-07 50.8 3.5 25 109-133 3-27 (208)
318 2obl_A ESCN; ATPase, hydrolase 95.9 0.0044 1.5E-07 55.5 3.5 27 109-135 72-98 (347)
319 1vht_A Dephospho-COA kinase; s 95.9 0.0051 1.7E-07 51.1 3.7 22 109-130 5-26 (218)
320 2o8b_B DNA mismatch repair pro 95.9 0.0096 3.3E-07 60.9 6.4 23 108-131 789-811 (1022)
321 2xb4_A Adenylate kinase; ATP-b 95.9 0.0047 1.6E-07 51.6 3.5 23 110-132 2-24 (223)
322 3crm_A TRNA delta(2)-isopenten 95.9 0.0045 1.5E-07 54.5 3.3 25 109-133 6-30 (323)
323 3foz_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 53.9 3.4 25 108-132 10-34 (316)
324 2f6r_A COA synthase, bifunctio 95.9 0.0052 1.8E-07 53.4 3.6 24 107-130 74-97 (281)
325 2f9l_A RAB11B, member RAS onco 95.8 0.0047 1.6E-07 50.4 3.2 23 109-131 6-28 (199)
326 3exa_A TRNA delta(2)-isopenten 95.8 0.0045 1.5E-07 54.1 3.1 24 109-132 4-27 (322)
327 3g5u_A MCG1178, multidrug resi 95.8 0.0076 2.6E-07 63.5 5.4 26 109-134 417-442 (1284)
328 2qag_B Septin-6, protein NEDD5 95.8 0.004 1.4E-07 57.0 2.8 34 94-131 30-65 (427)
329 3kta_A Chromosome segregation 95.8 0.0047 1.6E-07 49.7 3.0 25 109-133 27-51 (182)
330 2orw_A Thymidine kinase; TMTK, 95.8 0.0085 2.9E-07 48.4 4.5 27 109-135 4-30 (184)
331 4eaq_A DTMP kinase, thymidylat 95.8 0.011 3.6E-07 49.7 5.2 27 108-134 26-52 (229)
332 4f4c_A Multidrug resistance pr 95.8 0.0052 1.8E-07 64.9 3.8 26 109-134 445-470 (1321)
333 2r8r_A Sensor protein; KDPD, P 95.8 0.0097 3.3E-07 49.4 4.7 33 109-141 7-39 (228)
334 1ak2_A Adenylate kinase isoenz 95.8 0.0062 2.1E-07 51.2 3.7 25 109-133 17-41 (233)
335 2oap_1 GSPE-2, type II secreti 95.7 0.0062 2.1E-07 57.5 3.7 37 94-134 250-286 (511)
336 2qmh_A HPR kinase/phosphorylas 95.7 0.0047 1.6E-07 50.1 2.5 24 109-132 35-58 (205)
337 4f4c_A Multidrug resistance pr 95.7 0.0057 1.9E-07 64.7 3.8 25 109-133 1106-1130(1321)
338 2www_A Methylmalonic aciduria 95.7 0.011 3.8E-07 53.0 5.2 28 108-135 74-101 (349)
339 1lw7_A Transcriptional regulat 95.7 0.0061 2.1E-07 55.1 3.5 28 108-135 170-197 (365)
340 1u0j_A DNA replication protein 95.7 0.012 4E-07 50.2 5.0 39 94-132 90-128 (267)
341 1g8f_A Sulfate adenylyltransfe 95.7 0.0098 3.3E-07 55.9 4.8 48 87-134 374-421 (511)
342 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0054 1.9E-07 57.1 3.0 27 109-135 139-165 (460)
343 3a8t_A Adenylate isopentenyltr 95.6 0.0044 1.5E-07 54.8 2.3 24 109-132 41-64 (339)
344 2ck3_D ATP synthase subunit be 95.6 0.042 1.4E-06 50.8 8.7 26 109-134 154-179 (482)
345 2j9r_A Thymidine kinase; TK1, 95.6 0.028 9.7E-07 46.1 6.9 35 108-142 28-62 (214)
346 1q3t_A Cytidylate kinase; nucl 95.6 0.0078 2.7E-07 50.7 3.7 25 108-132 16-40 (236)
347 3euj_A Chromosome partition pr 95.6 0.0065 2.2E-07 56.6 3.4 31 109-139 30-60 (483)
348 2dpy_A FLII, flagellum-specifi 95.6 0.0073 2.5E-07 55.9 3.7 27 109-135 158-184 (438)
349 1yrb_A ATP(GTP)binding protein 95.6 0.014 4.6E-07 49.9 5.2 26 108-133 14-39 (262)
350 2dyk_A GTP-binding protein; GT 95.6 0.008 2.7E-07 46.8 3.4 23 109-131 2-24 (161)
351 3hjn_A DTMP kinase, thymidylat 95.6 0.028 9.5E-07 45.9 6.8 33 110-142 2-34 (197)
352 1ltq_A Polynucleotide kinase; 95.6 0.0071 2.4E-07 53.0 3.4 23 109-131 3-25 (301)
353 2wji_A Ferrous iron transport 95.6 0.0076 2.6E-07 47.5 3.2 22 109-130 4-25 (165)
354 4edh_A DTMP kinase, thymidylat 95.5 0.025 8.6E-07 46.7 6.5 28 109-136 7-34 (213)
355 2zts_A Putative uncharacterize 95.5 0.016 5.4E-07 49.0 5.4 34 109-142 31-65 (251)
356 1f2t_A RAD50 ABC-ATPase; DNA d 95.5 0.008 2.7E-07 46.7 3.2 24 109-132 24-47 (149)
357 2v3c_C SRP54, signal recogniti 95.5 0.0079 2.7E-07 55.5 3.5 35 108-142 99-133 (432)
358 3eph_A TRNA isopentenyltransfe 95.4 0.0098 3.3E-07 53.9 3.7 25 109-133 3-27 (409)
359 2zej_A Dardarin, leucine-rich 95.3 0.0066 2.3E-07 48.8 2.2 21 110-130 4-24 (184)
360 2vp4_A Deoxynucleoside kinase; 95.3 0.0058 2E-07 51.3 2.0 24 108-131 20-43 (230)
361 3end_A Light-independent proto 95.3 0.018 6.1E-07 50.6 5.2 36 107-142 40-75 (307)
362 1tf7_A KAIC; homohexamer, hexa 95.3 0.01 3.5E-07 56.4 3.7 47 92-143 26-75 (525)
363 3lv8_A DTMP kinase, thymidylat 95.3 0.027 9.2E-07 47.3 5.9 28 108-135 27-54 (236)
364 2wjg_A FEOB, ferrous iron tran 95.3 0.0099 3.4E-07 47.8 3.1 24 108-131 7-30 (188)
365 3lda_A DNA repair protein RAD5 95.3 0.014 4.8E-07 53.2 4.4 23 109-131 179-201 (400)
366 3zvl_A Bifunctional polynucleo 95.2 0.0071 2.4E-07 55.7 2.4 25 108-132 258-282 (416)
367 1z2a_A RAS-related protein RAB 95.2 0.013 4.6E-07 45.8 3.6 24 108-131 5-28 (168)
368 2ged_A SR-beta, signal recogni 95.2 0.012 4E-07 47.6 3.4 24 108-131 48-71 (193)
369 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4E-07 49.7 3.4 26 108-133 2-27 (241)
370 1cp2_A CP2, nitrogenase iron p 95.2 0.021 7.2E-07 49.0 5.1 34 109-142 2-35 (269)
371 3cmw_A Protein RECA, recombina 95.2 0.019 6.6E-07 61.3 5.5 101 94-199 717-819 (1706)
372 4akg_A Glutathione S-transfera 95.1 0.13 4.5E-06 57.7 12.2 24 109-132 1268-1291(2695)
373 3v9p_A DTMP kinase, thymidylat 95.1 0.029 9.8E-07 46.8 5.6 27 109-135 26-52 (227)
374 1fzq_A ADP-ribosylation factor 95.1 0.017 5.7E-07 46.3 4.0 25 107-131 15-39 (181)
375 2xau_A PRE-mRNA-splicing facto 95.1 0.15 5.2E-06 50.7 11.7 35 93-131 98-132 (773)
376 2gks_A Bifunctional SAT/APS ki 95.1 0.028 9.5E-07 53.5 6.0 45 90-134 354-398 (546)
377 2ce2_X GTPase HRAS; signaling 95.1 0.013 4.4E-07 45.7 3.2 23 109-131 4-26 (166)
378 3ld9_A DTMP kinase, thymidylat 95.1 0.04 1.4E-06 45.8 6.2 27 108-134 21-47 (223)
379 2nzj_A GTP-binding protein REM 95.0 0.016 5.5E-07 45.8 3.6 23 108-130 4-26 (175)
380 2afh_E Nitrogenase iron protei 95.0 0.024 8.3E-07 49.2 5.0 34 109-142 3-36 (289)
381 1u8z_A RAS-related protein RAL 95.0 0.019 6.5E-07 44.8 3.9 23 109-131 5-27 (168)
382 4tmk_A Protein (thymidylate ki 95.0 0.04 1.4E-06 45.5 6.0 28 109-136 4-31 (213)
383 2gj8_A MNME, tRNA modification 95.0 0.013 4.5E-07 46.5 3.0 23 109-131 5-27 (172)
384 3gmt_A Adenylate kinase; ssgci 95.0 0.016 5.5E-07 48.3 3.5 24 109-132 9-32 (230)
385 3tqf_A HPR(Ser) kinase; transf 94.9 0.015 5.2E-07 45.9 3.1 23 109-131 17-39 (181)
386 2fn4_A P23, RAS-related protei 94.9 0.021 7.1E-07 45.3 4.0 25 107-131 8-32 (181)
387 2yv5_A YJEQ protein; hydrolase 94.9 0.018 6.2E-07 50.5 3.9 35 94-134 156-190 (302)
388 2fz4_A DNA repair protein RAD2 94.9 0.2 6.9E-06 41.9 10.3 38 90-132 95-132 (237)
389 3b60_A Lipid A export ATP-bind 94.9 0.0083 2.9E-07 57.8 1.8 26 109-134 370-395 (582)
390 1kao_A RAP2A; GTP-binding prot 94.9 0.016 5.5E-07 45.2 3.2 23 109-131 4-26 (167)
391 1fx0_B ATP synthase beta chain 94.8 0.025 8.7E-07 52.4 4.8 34 109-142 166-200 (498)
392 3cmu_A Protein RECA, recombina 94.8 0.031 1E-06 60.7 6.0 82 109-200 384-471 (2050)
393 3upu_A ATP-dependent DNA helic 94.8 0.039 1.3E-06 51.4 6.2 42 93-137 33-74 (459)
394 3f9v_A Minichromosome maintena 94.8 0.0062 2.1E-07 58.7 0.7 49 84-132 294-351 (595)
395 4gzl_A RAS-related C3 botulinu 94.8 0.018 6.3E-07 47.1 3.5 40 90-131 14-53 (204)
396 1z08_A RAS-related protein RAB 94.8 0.017 5.7E-07 45.4 3.2 23 109-131 7-29 (170)
397 2lkc_A Translation initiation 94.8 0.015 5E-07 46.2 2.8 24 108-131 8-31 (178)
398 1nrj_B SR-beta, signal recogni 94.8 0.017 5.9E-07 47.7 3.4 24 108-131 12-35 (218)
399 4hlc_A DTMP kinase, thymidylat 94.8 0.029 1E-06 46.0 4.7 28 109-136 3-30 (205)
400 1r8s_A ADP-ribosylation factor 94.8 0.017 5.7E-07 45.1 3.1 22 110-131 2-23 (164)
401 1c1y_A RAS-related protein RAP 94.8 0.016 5.4E-07 45.4 2.9 23 109-131 4-26 (167)
402 3con_A GTPase NRAS; structural 94.8 0.017 5.8E-07 46.5 3.2 23 109-131 22-44 (190)
403 1ek0_A Protein (GTP-binding pr 94.8 0.016 5.4E-07 45.4 2.9 23 109-131 4-26 (170)
404 1z0j_A RAB-22, RAS-related pro 94.8 0.018 6E-07 45.2 3.2 23 109-131 7-29 (170)
405 1qhl_A Protein (cell division 94.8 0.0045 1.5E-07 51.7 -0.4 30 110-139 29-58 (227)
406 2qnr_A Septin-2, protein NEDD5 94.8 0.013 4.4E-07 51.4 2.6 23 109-131 19-41 (301)
407 1ky3_A GTP-binding protein YPT 94.7 0.021 7.2E-07 45.3 3.6 24 108-131 8-31 (182)
408 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.016 5.6E-07 45.9 2.9 24 108-131 7-30 (177)
409 4b3f_X DNA-binding protein smu 94.7 0.052 1.8E-06 53.0 7.1 47 92-143 193-239 (646)
410 3q85_A GTP-binding protein REM 94.7 0.021 7.1E-07 44.8 3.5 22 109-130 3-24 (169)
411 1pui_A ENGB, probable GTP-bind 94.7 0.0086 2.9E-07 49.2 1.3 23 109-131 27-49 (210)
412 1m8p_A Sulfate adenylyltransfe 94.7 0.032 1.1E-06 53.4 5.4 27 108-134 396-422 (573)
413 3ihw_A Centg3; RAS, centaurin, 94.7 0.018 6.2E-07 46.2 3.2 23 109-131 21-43 (184)
414 2rcn_A Probable GTPase ENGC; Y 94.7 0.016 5.4E-07 51.9 3.0 25 109-133 216-240 (358)
415 1svi_A GTP-binding protein YSX 94.7 0.016 5.3E-07 46.9 2.8 24 108-131 23-46 (195)
416 2axn_A 6-phosphofructo-2-kinas 94.7 0.032 1.1E-06 52.9 5.2 28 108-135 35-62 (520)
417 1m7b_A RND3/RHOE small GTP-bin 94.7 0.022 7.6E-07 45.6 3.6 24 108-131 7-30 (184)
418 1m2o_B GTP-binding protein SAR 94.7 0.019 6.4E-07 46.4 3.2 23 109-131 24-46 (190)
419 1h65_A Chloroplast outer envel 94.7 0.033 1.1E-06 47.9 4.9 35 97-131 28-62 (270)
420 1g16_A RAS-related protein SEC 94.7 0.023 7.8E-07 44.5 3.6 23 109-131 4-26 (170)
421 3def_A T7I23.11 protein; chlor 94.7 0.038 1.3E-06 47.2 5.2 36 96-131 24-59 (262)
422 2yl4_A ATP-binding cassette SU 94.6 0.0087 3E-07 57.9 1.2 25 109-133 371-395 (595)
423 1r2q_A RAS-related protein RAB 94.6 0.018 6.3E-07 45.1 2.9 23 109-131 7-29 (170)
424 2erx_A GTP-binding protein DI- 94.6 0.016 5.6E-07 45.5 2.7 22 109-130 4-25 (172)
425 2cjw_A GTP-binding protein GEM 94.6 0.018 6.1E-07 46.6 2.9 23 109-131 7-29 (192)
426 3qks_A DNA double-strand break 94.6 0.02 6.8E-07 47.0 3.2 25 109-133 24-48 (203)
427 2iwr_A Centaurin gamma 1; ANK 94.6 0.016 5.5E-07 46.0 2.6 23 109-131 8-30 (178)
428 2h92_A Cytidylate kinase; ross 94.6 0.016 5.6E-07 47.9 2.7 24 109-132 4-27 (219)
429 3q72_A GTP-binding protein RAD 94.6 0.018 6.2E-07 45.0 2.8 21 110-130 4-24 (166)
430 1upt_A ARL1, ADP-ribosylation 94.6 0.025 8.6E-07 44.4 3.7 23 109-131 8-30 (171)
431 3fdi_A Uncharacterized protein 94.5 0.022 7.6E-07 46.6 3.3 25 109-133 7-31 (201)
432 3c5c_A RAS-like protein 12; GD 94.5 0.019 6.6E-07 46.1 2.9 23 109-131 22-44 (187)
433 3tw8_B RAS-related protein RAB 94.5 0.022 7.5E-07 45.2 3.2 24 107-130 8-31 (181)
434 3kjh_A CO dehydrogenase/acetyl 94.5 0.033 1.1E-06 47.0 4.5 32 111-142 3-34 (254)
435 3pqc_A Probable GTP-binding pr 94.5 0.019 6.5E-07 46.2 2.8 24 108-131 23-46 (195)
436 1ega_A Protein (GTP-binding pr 94.5 0.02 6.7E-07 50.2 3.1 24 108-131 8-31 (301)
437 1z0f_A RAB14, member RAS oncog 94.5 0.023 7.7E-07 45.0 3.2 24 108-131 15-38 (179)
438 2oil_A CATX-8, RAS-related pro 94.5 0.021 7E-07 46.1 2.9 24 108-131 25-48 (193)
439 2y8e_A RAB-protein 6, GH09086P 94.4 0.023 7.8E-07 45.0 3.2 23 109-131 15-37 (179)
440 3bc1_A RAS-related protein RAB 94.4 0.029 9.9E-07 45.0 3.8 24 108-131 11-34 (195)
441 2cxx_A Probable GTP-binding pr 94.4 0.022 7.5E-07 45.7 3.0 22 110-131 3-24 (190)
442 2hxs_A RAB-26, RAS-related pro 94.4 0.019 6.4E-07 45.5 2.5 24 108-131 6-29 (178)
443 3kkq_A RAS-related protein M-R 94.4 0.024 8.2E-07 45.2 3.2 24 108-131 18-41 (183)
444 1moz_A ARL1, ADP-ribosylation 94.4 0.029 1E-06 44.6 3.7 23 108-130 18-40 (183)
445 2bme_A RAB4A, RAS-related prot 94.4 0.024 8.1E-07 45.3 3.2 24 108-131 10-33 (186)
446 4dsu_A GTPase KRAS, isoform 2B 94.4 0.024 8.2E-07 45.4 3.2 23 109-131 5-27 (189)
447 3t5g_A GTP-binding protein RHE 94.3 0.028 9.6E-07 44.7 3.5 24 108-131 6-29 (181)
448 1vg8_A RAS-related protein RAB 94.3 0.029 1E-06 45.7 3.6 24 108-131 8-31 (207)
449 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.031 1.1E-06 44.6 3.7 23 109-131 6-28 (186)
450 3vkw_A Replicase large subunit 94.3 0.11 3.8E-06 47.7 7.7 25 106-130 159-183 (446)
451 2efe_B Small GTP-binding prote 94.3 0.026 8.8E-07 44.8 3.2 23 109-131 13-35 (181)
452 3qkt_A DNA double-strand break 94.3 0.025 8.4E-07 50.5 3.3 23 109-131 24-46 (339)
453 3lxx_A GTPase IMAP family memb 94.3 0.027 9.3E-07 47.3 3.5 24 108-131 29-52 (239)
454 2a9k_A RAS-related protein RAL 94.3 0.026 8.8E-07 45.0 3.2 24 108-131 18-41 (187)
455 3tkl_A RAS-related protein RAB 94.3 0.032 1.1E-06 45.0 3.8 24 108-131 16-39 (196)
456 3dz8_A RAS-related protein RAB 94.3 0.027 9.4E-07 45.3 3.3 23 109-131 24-46 (191)
457 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.024 8.2E-07 51.1 3.2 24 109-132 24-47 (365)
458 2atv_A RERG, RAS-like estrogen 94.3 0.024 8.2E-07 45.9 2.9 23 109-131 29-51 (196)
459 2g6b_A RAS-related protein RAB 94.3 0.027 9.1E-07 44.7 3.2 24 108-131 10-33 (180)
460 2ew1_A RAS-related protein RAB 94.3 0.026 8.9E-07 46.1 3.2 24 108-131 26-49 (201)
461 3io3_A DEHA2D07832P; chaperone 94.3 0.051 1.7E-06 48.5 5.3 35 108-142 18-54 (348)
462 2fg5_A RAB-22B, RAS-related pr 94.3 0.026 9E-07 45.5 3.2 23 109-131 24-46 (192)
463 3clv_A RAB5 protein, putative; 94.3 0.026 8.9E-07 45.7 3.2 24 108-131 7-30 (208)
464 3bwd_D RAC-like GTP-binding pr 94.3 0.024 8.4E-07 45.0 2.9 23 109-131 9-31 (182)
465 1gwn_A RHO-related GTP-binding 94.2 0.024 8.2E-07 46.5 2.9 24 108-131 28-51 (205)
466 3iqw_A Tail-anchored protein t 94.2 0.055 1.9E-06 48.0 5.4 35 108-142 16-50 (334)
467 1f6b_A SAR1; gtpases, N-termin 94.2 0.025 8.7E-07 46.0 3.0 22 109-130 26-47 (198)
468 1zj6_A ADP-ribosylation factor 94.2 0.052 1.8E-06 43.4 4.8 22 109-130 17-38 (187)
469 2bov_A RAla, RAS-related prote 94.2 0.037 1.3E-06 45.0 3.9 24 108-131 14-37 (206)
470 2gf9_A RAS-related protein RAB 94.2 0.026 8.7E-07 45.4 2.9 24 108-131 22-45 (189)
471 3cbq_A GTP-binding protein REM 94.2 0.02 7E-07 46.4 2.3 22 108-129 23-44 (195)
472 1zd9_A ADP-ribosylation factor 94.2 0.029 9.8E-07 45.1 3.2 23 109-131 23-45 (188)
473 4dzz_A Plasmid partitioning pr 94.1 0.05 1.7E-06 44.3 4.7 34 109-142 2-36 (206)
474 3oes_A GTPase rhebl1; small GT 94.1 0.028 9.7E-07 45.7 3.2 24 108-131 24-47 (201)
475 3k53_A Ferrous iron transport 94.1 0.025 8.6E-07 48.6 2.9 23 109-131 4-26 (271)
476 1p5z_B DCK, deoxycytidine kina 94.1 0.011 3.8E-07 50.6 0.7 25 108-132 24-48 (263)
477 2iw3_A Elongation factor 3A; a 94.1 0.011 3.8E-07 59.7 0.7 27 109-135 700-726 (986)
478 2a5j_A RAS-related protein RAB 94.1 0.027 9.2E-07 45.4 2.9 23 109-131 22-44 (191)
479 1t9h_A YLOQ, probable GTPase E 94.1 0.014 4.8E-07 51.1 1.3 25 109-133 174-198 (307)
480 3reg_A RHO-like small GTPase; 94.1 0.027 9.2E-07 45.5 2.9 24 108-131 23-46 (194)
481 2fh5_B SR-beta, signal recogni 94.1 0.029 1E-06 46.1 3.2 23 109-131 8-30 (214)
482 1bif_A 6-phosphofructo-2-kinas 94.1 0.05 1.7E-06 50.9 5.0 27 109-135 40-66 (469)
483 1ko7_A HPR kinase/phosphatase; 94.1 0.047 1.6E-06 47.8 4.5 23 109-131 145-167 (314)
484 1z06_A RAS-related protein RAB 94.1 0.031 1E-06 44.9 3.2 24 108-131 20-43 (189)
485 3t1o_A Gliding protein MGLA; G 94.0 0.031 1.1E-06 45.0 3.2 25 108-132 14-38 (198)
486 2qag_C Septin-7; cell cycle, c 94.0 0.018 6.2E-07 52.8 1.9 23 110-132 33-55 (418)
487 2gf0_A GTP-binding protein DI- 94.0 0.04 1.4E-06 44.5 3.8 24 108-131 8-31 (199)
488 2g3y_A GTP-binding protein GEM 94.0 0.029 1E-06 46.3 3.0 23 108-130 37-59 (211)
489 2p5s_A RAS and EF-hand domain 94.0 0.032 1.1E-06 45.3 3.2 24 108-131 28-51 (199)
490 3tmk_A Thymidylate kinase; pho 94.0 0.037 1.3E-06 45.8 3.5 26 109-134 6-31 (216)
491 4bas_A ADP-ribosylation factor 94.0 0.034 1.2E-06 44.9 3.3 23 108-130 17-39 (199)
492 2o5v_A DNA replication and rep 94.0 0.032 1.1E-06 50.0 3.3 23 109-131 27-49 (359)
493 1x3s_A RAS-related protein RAB 93.9 0.033 1.1E-06 44.8 3.2 23 109-131 16-38 (195)
494 1u0l_A Probable GTPase ENGC; p 93.9 0.028 9.5E-07 49.2 2.8 36 94-134 160-195 (301)
495 1x6v_B Bifunctional 3'-phospho 93.9 0.059 2E-06 51.9 5.3 28 107-134 51-78 (630)
496 3ug7_A Arsenical pump-driving 93.9 0.093 3.2E-06 46.9 6.3 36 107-142 25-60 (349)
497 1zbd_A Rabphilin-3A; G protein 93.9 0.025 8.6E-07 46.0 2.4 24 108-131 8-31 (203)
498 3ea0_A ATPase, para family; al 93.9 0.069 2.4E-06 44.9 5.2 35 108-142 4-40 (245)
499 1mky_A Probable GTP-binding pr 93.9 0.053 1.8E-06 50.2 4.8 45 87-131 150-203 (439)
500 2bcg_Y Protein YP2, GTP-bindin 93.9 0.034 1.2E-06 45.4 3.2 24 108-131 8-31 (206)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.1e-40 Score=317.34 Aligned_cols=274 Identities=16% Similarity=0.116 Sum_probs=201.3
Q ss_pred ccchhhHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHH----HHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364 88 VGLDSRLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYD----LISHEFEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 88 vGR~~~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
+||+.+++.|..+|..+ ..++++|+|+|+||+||||||+.+++ ++..+|+.++|+. ++.... .+...+...++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999754 34579999999999999999999997 5788899999984 322111 35677888888
Q ss_pred HHHhCCCC-CC-----CcchhhhHHHHHHhhCCC-ceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcC
Q 017364 163 SQLLNLPD-SG-----VWNVYDGMNMIRSRLRHK-KVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHG 235 (373)
Q Consensus 163 ~~~~~~~~-~~-----~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~ 235 (373)
..+..... .. ..+...+...+++.+.++ ++||||||+|+..++ .+.. .+||+||||||+..++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88765421 11 123344578889999996 999999999998865 2222 15999999999999887764
Q ss_pred -CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH-hcCCCC
Q 017364 236 -VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR-LERDPE 313 (373)
Q Consensus 236 -~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~-l~~~~~ 313 (373)
....++|++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++..... |...+.. +.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~-~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFE-KMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHH-HHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHH-HHHHhHHHhhcccH
Confidence 3367999999999999999999876432 35777889999999999999999999999777533 3233332 221123
Q ss_pred chHHHHHHhchhCCchhhHHHHh-----------hhcccCCCCCHHHHHHHHHhC--CCCccc-----------chhhhh
Q 017364 314 NEILDVLQISFDGLKETEKKIFL-----------DIACFYKGKYIDYVTKILNYC--DFDPII-----------GIGGLI 369 (373)
Q Consensus 314 ~~i~~~l~~s~~~L~~~~~~~l~-----------~la~f~~~~~~~~l~~l~~~~--~~~~~~-----------~l~~L~ 369 (373)
.++..++..||+.||++.+.||. +||+||++++++ +.+|.++ |+.... .++.|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 33444555555555555555555 999999999877 7899998 665433 488999
Q ss_pred ccCC
Q 017364 370 ENLY 373 (373)
Q Consensus 370 ~~~L 373 (373)
++||
T Consensus 439 ~rsL 442 (549)
T 2a5y_B 439 KRGA 442 (549)
T ss_dssp TBSS
T ss_pred HcCC
Confidence 9886
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-36 Score=317.28 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=219.6
Q ss_pred cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH---HhccccceEEEeechhhhcccCHHHH
Q 017364 81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL---ISHEFEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
|..+..||||+.++++|...|....+++++|+|+||||+||||||++++++ ....|...+||..+.... .......
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~ 198 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLMK 198 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHHH
Confidence 345577999999999999999866667899999999999999999999976 355577666554443211 1223333
Q ss_pred HHHHHHHHhCCC---CCCCcchhhhHHHHHHhhCCC--ceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364 158 QKQLISQLLNLP---DSGVWNVYDGMNMIRSRLRHK--KVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM 232 (373)
Q Consensus 158 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~ 232 (373)
...+...+.... .....+.......++..+.++ ++||||||+|+...+..+ ++|++||+|||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 445555543322 122345666777888888776 999999999998776654 45899999999998874
Q ss_pred h-cCCCceEeCCC-CCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 017364 233 A-HGVDEVYMHEH-LNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLER 310 (373)
Q Consensus 233 ~-~~~~~~~~l~~-L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l~~ 310 (373)
. ......+.+++ |+.+|+++||...++... +...+.+.+|+++|+|+||||+++|++|+.++ ..|...+..+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 3 34556889986 999999999998884432 23345689999999999999999999998655 468888887754
Q ss_pred CC-----------CchHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364 311 DP-----------ENEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDPIIGIGGLIENLY 373 (373)
Q Consensus 311 ~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~~L 373 (373)
.. ...+..+|..||+.|++++|.||.+||+||+++ +.+.+..+|+.++......++.|+++||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 32 145899999999999999999999999999986 6889999999888888899999999987
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=284.50 Aligned_cols=279 Identities=19% Similarity=0.257 Sum_probs=207.4
Q ss_pred cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH---hcccc-ceEEEeechhhhcccCHHH
Q 017364 81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI---SHEFE-ASCFLANVREISKKSGLVF 156 (373)
Q Consensus 81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~ 156 (373)
|+.+..||||+.+++.|...|....++.++|+|+|+||+||||||.+++++. ...|+ .++|+. +..... .....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~-~~~~~ 197 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK-SGLLM 197 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH-HHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch-HHHHH
Confidence 4556789999999999999998655567999999999999999999999753 66786 455554 322111 11122
Q ss_pred HHHHHHHHHhCC---CCCCCcchhhhHHHHHHhhCC--CceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364 157 LQKQLISQLLNL---PDSGVWNVYDGMNMIRSRLRH--KKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL 231 (373)
Q Consensus 157 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~ 231 (373)
....+...+... ......+.......+...+.+ +++||||||+|+...++.+ ++|++||+|||+..+.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence 222233333211 112234455666677777755 7899999999998776543 4589999999999876
Q ss_pred hhcCCCceEeC---CCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHh
Q 017364 232 MAHGVDEVYMH---EHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRL 308 (373)
Q Consensus 232 ~~~~~~~~~~l---~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l 308 (373)
.... ...+.+ ++|+.+|+++||...++... ....+.+.+|++.|+|+||||.++|++++... ..|...+..+
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l 345 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL 345 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 5543 334444 58999999999999886421 12245689999999999999999999997654 3688888877
Q ss_pred cCCC-----------CchHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364 309 ERDP-----------ENEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDPIIGIGGLIENLY 373 (373)
Q Consensus 309 ~~~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~~L 373 (373)
.... ..++..++..||+.||++.|.||.++|+||++. +.+.+..+|+.++..+...++.|+++||
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 5432 247899999999999999999999999999864 6789999998776667788999999986
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-34 Score=284.92 Aligned_cols=261 Identities=17% Similarity=0.136 Sum_probs=193.6
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH--HHhccccc-eEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD--LISHEFEA-SCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
+..|||+.+++.|..+|... ++.++|+|+||||+||||||+.+++ ++..+|+. ++|+. ++ .......+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CCCCHHHHHHHH
Confidence 34599999999999999753 2368999999999999999999997 46788987 55554 33 233344444444
Q ss_pred HHH---HhCCCCCC-------CcchhhhHHHHHHhh---CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364 162 ISQ---LLNLPDSG-------VWNVYDGMNMIRSRL---RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDK 228 (373)
Q Consensus 162 ~~~---~~~~~~~~-------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~ 228 (373)
... ........ ..+.......+++.+ .++++||||||+|+.+.|+.+. +||+||||||+.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 432 21110000 112333455566655 6899999999999998888763 489999999999
Q ss_pred hhHhhcCCCceEeCC------CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCC--CHHH
Q 017364 229 HLLMAHGVDEVYMHE------HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR--TIAE 300 (373)
Q Consensus 229 ~~~~~~~~~~~~~l~------~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~~ 300 (373)
.++..+.....+.++ +|+.+||++||...... . . .+...+ .|+|+||||.++|++|+.+ +...
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~-~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-R-P----QDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC-C-T----TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCC-C-H----HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 877533222245555 89999999999988422 1 1 122233 4999999999999999875 6778
Q ss_pred HHHHHHHhcCCCCchHHHHHHhchhCCchhh-HHHHhhhcccCCCCC--HHHHHHHHHhCCC-CcccchhhhhccCC
Q 017364 301 WESALQRLERDPENEILDVLQISFDGLKETE-KKIFLDIACFYKGKY--IDYVTKILNYCDF-DPIIGIGGLIENLY 373 (373)
Q Consensus 301 ~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-~~~l~~la~f~~~~~--~~~l~~l~~~~~~-~~~~~l~~L~~~~L 373 (373)
|... ....+..+|..||+.||+++ |.||++||+||++++ .+.+..+|.+++. .+...++.|+++||
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSS
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Confidence 8652 35789999999999999999 999999999999764 6789999998863 46678999999987
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.80 E-value=3.9e-18 Score=155.38 Aligned_cols=270 Identities=14% Similarity=0.103 Sum_probs=158.7
Q ss_pred ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhh---cccCHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREIS---KKSGLVFLQ 158 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~ 158 (373)
..+..|+||+.+++.+...+..+ +.+.|+|++|+|||||++.+++.. + .+|+. +.... .......+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITREELI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHHHHH
Confidence 45578999999999999999865 789999999999999999998865 1 44443 32211 011233333
Q ss_pred HHHHHHHhC----------------CC-CCCCcchhhhHHHHHHhhCC-CceEEEecccccHH---------HHHHHhcC
Q 017364 159 KQLISQLLN----------------LP-DSGVWNVYDGMNMIRSRLRH-KKVLLVIDDVIELQ---------QLESLAGK 211 (373)
Q Consensus 159 ~~~~~~~~~----------------~~-~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~---------~l~~l~~~ 211 (373)
..+...+.. .. .....+.......+.+.... ++++|||||++... .+..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 333322111 00 00012334444445444432 48999999997532 12222111
Q ss_pred CCCCCCCcEEEEEeCChhhHhhc------------CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 017364 212 HDWFGIGSRIFITSRDKHLLMAH------------GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA 279 (373)
Q Consensus 212 ~~~~~~g~~iliTtR~~~~~~~~------------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 279 (373)
... .++.++|+|++........ .....+.+.||+.+|+.+++.......... ...+.+..+++.|
T Consensus 159 ~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELL 235 (350)
T ss_dssp HHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHH
T ss_pred HHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHh
Confidence 110 1367899998876432211 112478999999999999997754221111 1235688999999
Q ss_pred CCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCchHHHHHHhchhCC---chhhHHHHhhhcccCCCCCHHHHHHHHH
Q 017364 280 GGLPLALKVLGSFLFG-RTIAEWESALQRLERDPENEILDVLQISFDGL---KETEKKIFLDIACFYKGKYIDYVTKILN 355 (373)
Q Consensus 280 ~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~l~~ 355 (373)
+|+|+++..++..+.. .+...+.. .+ ...+...+...+..+ ++..+.++..+|+ ...+...+...+.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~ 306 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLA 306 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999999999876432 23222211 11 111222233333344 7899999999998 3456777776653
Q ss_pred hC--CCC---cccchhhhhccCC
Q 017364 356 YC--DFD---PIIGIGGLIENLY 373 (373)
Q Consensus 356 ~~--~~~---~~~~l~~L~~~~L 373 (373)
.. +.. ....++.|++.+|
T Consensus 307 ~~~~~~~~~~~~~~l~~L~~~gl 329 (350)
T 2qen_A 307 VKGTKIPEPRLYALLENLKKMNW 329 (350)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHhCCCCHHHHHHHHHHHHhCCC
Confidence 32 222 2345667766553
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=1.1e-17 Score=152.75 Aligned_cols=265 Identities=13% Similarity=0.153 Sum_probs=152.5
Q ss_pred ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhh--cccCHHHHHH
Q 017364 82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREIS--KKSGLVFLQK 159 (373)
Q Consensus 82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~ 159 (373)
..+..|+||+.+++.+.. +.. +++.|+|++|+|||+|++.+++..... .+|+. +.... ..........
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLL 79 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHH
Confidence 455789999999999999 764 589999999999999999999876532 34543 22210 0011122222
Q ss_pred HHHHHH-------------hCCC------CC---------CCcchhhhHHHHHHhhCCCceEEEecccccHH-----H--
Q 017364 160 QLISQL-------------LNLP------DS---------GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----Q-- 204 (373)
Q Consensus 160 ~~~~~~-------------~~~~------~~---------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~-- 204 (373)
.+...+ +... .. ...........+.+... ++++|||||++... .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 221111 1100 00 01123333333433222 48999999996532 1
Q ss_pred --HHHHhcCCCCCCCCcEEEEEeCChhhHhh----------c--CCCceEeCCCCCHhHHHHHHHHhhcC-CCCCCchHH
Q 017364 205 --LESLAGKHDWFGIGSRIFITSRDKHLLMA----------H--GVDEVYMHEHLNYDEALGLFCLKAFK-SHKPWKGYE 269 (373)
Q Consensus 205 --l~~l~~~~~~~~~g~~iliTtR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~l~~~~~~~-~~~~~~~~~ 269 (373)
+..+.... .+.++|+|++....... . .....+.+.+|+.+|+.+++...... ..... .
T Consensus 159 ~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~-- 231 (357)
T 2fna_A 159 PALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D-- 231 (357)
T ss_dssp HHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C--
T ss_pred HHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c--
Confidence 22232221 36789999998653221 1 11257899999999999999875421 11222 1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHH-HHHhcCCCCchHHHHHHhch---hCCchhhHHHHhhhcccCCC
Q 017364 270 QLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESA-LQRLERDPENEILDVLQISF---DGLKETEKKIFLDIACFYKG 344 (373)
Q Consensus 270 ~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~-l~~l~~~~~~~i~~~l~~s~---~~L~~~~~~~l~~la~f~~~ 344 (373)
...+++.|+|+|+++..++..+.. .+...|... .+.. ...+...+...+ ..|++..+.++..+|+ . .
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~ 303 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G 303 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence 278999999999999999877632 333333221 1110 001111122111 1688999999999998 3 3
Q ss_pred CCHHHHHHHHH-hCC--C---CcccchhhhhccCC
Q 017364 345 KYIDYVTKILN-YCD--F---DPIIGIGGLIENLY 373 (373)
Q Consensus 345 ~~~~~l~~l~~-~~~--~---~~~~~l~~L~~~~L 373 (373)
+...+...+. ..| . .....++.|++++|
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gl 337 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSW 337 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 6677665432 123 2 22455777766553
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.77 E-value=5.9e-17 Score=151.01 Aligned_cols=250 Identities=16% Similarity=0.057 Sum_probs=150.6
Q ss_pred cccCcccchhhHHHHHHHH-hcC--C--CCeEEEEE--eccCCcchhHHHHHHHHHHhccc-----cc-eEEEeechhhh
Q 017364 83 TLKELVGLDSRLEKLRFLI-NKG--P--TDVRMIGI--CGMGGIGKTTLARVVYDLISHEF-----EA-SCFLANVREIS 149 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l-~~~--~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~ 149 (373)
.+..|+||+.+++.+...+ ... . ...+.+.| +|++|+|||||++.+++.....+ .. .+|+. + .
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A---F 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G---G
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C---C
Confidence 3468999999999999988 421 1 23467777 99999999999999998876531 22 33432 2 2
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC--CCceEEEecccccH--------HHHHHHhcCC---CCCC
Q 017364 150 KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIEL--------QQLESLAGKH---DWFG 216 (373)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--------~~l~~l~~~~---~~~~ 216 (373)
.......+...++..+.........+.......+...+. +++++|||||++.. ..+..+...+ +..+
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 234555666777766533222122233444555555553 67899999999753 3333332221 1112
Q ss_pred --CCcEEEEEeCChhhHhh---------cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC-----
Q 017364 217 --IGSRIFITSRDKHLLMA---------HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG----- 280 (373)
Q Consensus 217 --~g~~iliTtR~~~~~~~---------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~----- 280 (373)
.+..+|+||+...+... ......+.+++|+.+++.++|...+...........+....+++.|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 34557878875543211 11223499999999999999976542111111122467889999999
Q ss_pred -CCchHHHHHHHHhc------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364 281 -GLPLALKVLGSFLF------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY 342 (373)
Q Consensus 281 -g~Plal~~~~~~l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~ 342 (373)
|+|..+..++.... + -+...+..++..... ...+..+++.||+..+.++..++.+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99987666654321 1 123334444433210 23455667899999999999999754
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=3.9e-15 Score=137.36 Aligned_cols=243 Identities=13% Similarity=0.070 Sum_probs=154.9
Q ss_pred ccCcccchhhHHHHHHHHhc--CCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------c-cceEEEeechhhhccc-C
Q 017364 84 LKELVGLDSRLEKLRFLINK--GPTDVRMIGICGMGGIGKTTLARVVYDLISHE------F-EASCFLANVREISKKS-G 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~-~ 153 (373)
+..++||+.+++.+...+.. .....+.+.|+|++|+|||+||+.+++.+... + ...+.+.++. ... .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR---EVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH---HHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc---cCCCC
Confidence 37899999999999988764 22335789999999999999999999987543 1 2222222322 223 4
Q ss_pred HHHHHHHHHHHHhCCCCC-CCcchhhhHHHHHHhhCCCceEEEecccccHH------H-HHHHhcCCCCCCCCcEEEEEe
Q 017364 154 LVFLQKQLISQLLNLPDS-GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ------Q-LESLAGKHDWFGIGSRIFITS 225 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~-l~~l~~~~~~~~~g~~iliTt 225 (373)
...+...++..+.+.... ...+.......+...+...+.+|+|||++... . +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 555666666666443222 12234455666777777666699999997543 2 33444332 477888898
Q ss_pred CChhhHh----h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHH-HHHHHh--
Q 017364 226 RDKHLLM----A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALK-VLGSFL-- 293 (373)
Q Consensus 226 R~~~~~~----~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~-~~~~~l-- 293 (373)
+...... . ......+.+++++.++..+++...+...........+..+.+++.++ |+|..+. .+-...
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8753211 0 11223899999999999999988753111011112345777888888 9988443 332221
Q ss_pred c----CCCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcc
Q 017364 294 F----GRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIAC 340 (373)
Q Consensus 294 ~----~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~ 340 (373)
. .-+.+.+..++.... ...+..+++.|++.++.++..++.
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 1 134566666666542 245667788999999998888887
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=5.1e-15 Score=136.51 Aligned_cols=248 Identities=15% Similarity=0.103 Sum_probs=148.1
Q ss_pred cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccc--c-ceEEEeechhhhcccCHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEF--E-ASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~~~~~ 157 (373)
.+..|+||+.+++.+...+... ....+.+.|+|++|+|||||++.+++.+...+ . ..+|+. +. .......+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~---~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR---QIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH---HHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC---CCCCHHHH
Confidence 3478999999999999988742 23357899999999999999999999876653 2 233332 22 12233334
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhC--CCceEEEecccccHH------HHHHHhcCCCC-CCCCcEEEEEeCCh
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIELQ------QLESLAGKHDW-FGIGSRIFITSRDK 228 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~l~~l~~~~~~-~~~g~~iliTtR~~ 228 (373)
...++..+.........+.......+...+. +++.+|+||+++... .+..+...... ...+..+|+||++.
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 4444433311111111223444445555543 458999999986532 33333222210 13356678888866
Q ss_pred hhHhhc------CC-CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHHHHHHHhc----
Q 017364 229 HLLMAH------GV-DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALKVLGSFLF---- 294 (373)
Q Consensus 229 ~~~~~~------~~-~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~---- 294 (373)
...... .. ...+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 432211 11 24799999999999999987642111111123456777888887 99995544443321
Q ss_pred --C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhccc
Q 017364 295 --G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACF 341 (373)
Q Consensus 295 --~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f 341 (373)
+ -+...+..++.... ...+...++.+++..+.++..++.+
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~ 298 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSI 298 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23445555554431 2456677888999999988888854
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=1.8e-14 Score=133.06 Aligned_cols=248 Identities=14% Similarity=0.083 Sum_probs=151.3
Q ss_pred ccCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
++.++||+.+++.+...+.. .....+.+.|+|++|+|||||++.+++...... ...+++. + ........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---FIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---TTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---ccCCCHHHHH
Confidence 36799999999999988875 222234899999999999999999999876542 2333332 2 2233445556
Q ss_pred HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEeccccc--HHHHHHHhcCCCCCC----CCcEEEEEeCChhh
Q 017364 159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIE--LQQLESLAGKHDWFG----IGSRIFITSRDKHL 230 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~----~g~~iliTtR~~~~ 230 (373)
..++..+.........+.......+...+ .+++.+|+||+++. ...+..+........ .+..+|++|++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 66665543222212223444444444444 35688999999975 344444444332111 36678888887643
Q ss_pred HhhcC-------CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh---------CCCchHHHHHHHHhc
Q 017364 231 LMAHG-------VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA---------GGLPLALKVLGSFLF 294 (373)
Q Consensus 231 ~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~ 294 (373)
..... ....+.+++++.++..+++...+...........+..+.+++.+ +|+|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22211 12369999999999999998775320001122356788899999 799876665554321
Q ss_pred ------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364 295 ------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY 342 (373)
Q Consensus 295 ------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~ 342 (373)
+ -+......++...... .+...++.|+++.+.++..++.+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1233444444433211 123336678888998888888654
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=1.8e-14 Score=132.85 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=150.9
Q ss_pred cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cc-eEEEeechhhhcccCH
Q 017364 83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EA-SCFLANVREISKKSGL 154 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~~~~~~ 154 (373)
.+..++||+.+++.+..++... ....+.+.|+|++|+|||||++.+++...... .. .+++ ++ ......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i-~~---~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV-NA---RHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE-ET---TTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE-EC---CcCCCH
Confidence 3478999999999999988542 23457899999999999999999998875431 22 2333 22 223445
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH-------HHHHHhcCCCCC--CCCcEEEE
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-------QLESLAGKHDWF--GIGSRIFI 223 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~--~~g~~ili 223 (373)
..+...++..+.........+.......+...+ .+++.+|+||+++... .+..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 556666666653322222233445555566555 3558899999997543 233333222111 23556777
Q ss_pred EeCChhhHh------hcCCC-ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHHHHHHHh
Q 017364 224 TSRDKHLLM------AHGVD-EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALKVLGSFL 293 (373)
Q Consensus 224 TtR~~~~~~------~~~~~-~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l 293 (373)
||+...... ..... ..+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+....
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 877652210 01122 4789999999999999987753100011112345677888888 9995444333222
Q ss_pred c------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364 294 F------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY 342 (373)
Q Consensus 294 ~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~ 342 (373)
. + -+.+.+..++.... ...+..++..|++.++.++..++.+.
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~ 303 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLE 303 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 1 24555666655431 23566678899999998888887443
No 12
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.62 E-value=2.2e-16 Score=126.14 Aligned_cols=78 Identities=38% Similarity=0.598 Sum_probs=69.6
Q ss_pred CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCCCChhHHHhhhhhcccccccCc
Q 017364 1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAK 80 (373)
Q Consensus 1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (373)
+|+||||+|+|++||.|+|+|+++|.+++.+ .+.+++++|++||+++++++|+.+ ..+|.+++++|++.|..++.++
T Consensus 97 ~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~-~~~e~~~i~~Iv~~v~~~l~~~ 173 (176)
T 3jrn_A 97 TVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS-GDDDSKLVDKIANEISNKKTIY 173 (176)
T ss_dssp EEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC-CSCHHHHHHHHHHHHHTTCC--
T ss_pred EEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec-CCCHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999887 556789999999999999999988 4679999999999999988876
Q ss_pred c
Q 017364 81 S 81 (373)
Q Consensus 81 ~ 81 (373)
|
T Consensus 174 ~ 174 (176)
T 3jrn_A 174 A 174 (176)
T ss_dssp -
T ss_pred C
Confidence 5
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=3.2e-13 Score=116.07 Aligned_cols=197 Identities=14% Similarity=0.097 Sum_probs=117.2
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
...++||+.+++.+...+..+. ..+.+.|+|++|+|||||++.+++.+...+....... . .. .. ...+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--~-----~~-~~-~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--G-----VC-DN-CREIEQ 91 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--S-----CS-HH-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--c-----cc-HH-HHHHhc
Confidence 3569999999999999998653 2357899999999999999999988754332111000 0 00 00 000000
Q ss_pred H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364 164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHLLM 232 (373)
Q Consensus 164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~ 232 (373)
. +........... .....+.+.+ .+++.+||+||++. ...+..+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTCGGGH-HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcccccH-HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0 000000000001 1111122221 34678999999964 3444444443332244678888887653211
Q ss_pred h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 233 A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 233 ~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
. ......+.+++++.++..+++...+...... ...+....|++.|+|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1224689999999999999998776432222 224568899999999999998887654
No 14
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.53 E-value=2.1e-15 Score=122.47 Aligned_cols=76 Identities=36% Similarity=0.768 Sum_probs=67.7
Q ss_pred CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCCC-ChhHHHhhhhhccccccc
Q 017364 1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR-NEPEFIVDIVKEISCKIS 78 (373)
Q Consensus 1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~ 78 (373)
+|+||||+|+|++||.|+|+|+++|.++++++.. +++++|++||+++|+++||.+.+. .+.+++++|+..|..+++
T Consensus 125 ~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 125 IILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201 (204)
T ss_dssp EECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999887643 579999999999999999998874 577899999998887765
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.46 E-value=2.7e-12 Score=108.66 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=113.0
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
...++||+..++.+..++..+.. +.+.|+|++|+|||+|++.+++.+.... ...+...+. ......... ...+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 89 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVV-RHKI 89 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHH-HHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHH-HHHH
Confidence 35699999999999999986532 3489999999999999999998864432 222222221 111111111 1111
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhHh-h-cCCCc
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLLM-A-HGVDE 238 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~~-~-~~~~~ 238 (373)
........ ....++.+|++||++.. .....+...+.....+..+|+||+...... . .....
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111100 01356789999999753 333333322222234677888887653211 1 11234
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
.+.+++++.++..+++...+...... ...+....+++.++|+|..+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999998776322211 22456788999999999976555443
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1e-11 Score=111.53 Aligned_cols=184 Identities=15% Similarity=0.205 Sum_probs=109.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
...++|++..++.+..++..+.. +.+.|+|++|+|||++|+.+++.+... +...+...+. ...... .....++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~~-~~i~~~~ 93 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRGI-DVVRNQI 93 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCSH-HHHHTHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccCh-HHHHHHH
Confidence 35699999999999999986532 338999999999999999999986432 2221221111 111111 1111222
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cCCC
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HGVD 237 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~~~ 237 (373)
..+.... ..+ .+++.++|+||++.. .....+...+.....++.+|++|++..-. .. ....
T Consensus 94 ~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 94 KHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2111000 011 345789999999752 23333322222223467788888765321 11 1233
Q ss_pred ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHHH
Q 017364 238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVLG 290 (373)
Q Consensus 238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~ 290 (373)
..+.+.+++.++..+++...+...... ...+....+++.++|+|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 589999999999999998765321111 2245678899999999955 44443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=1.1e-10 Score=104.90 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=111.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
...++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.... ...+...+..... .. ......+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 97 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSM--PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---GI-NVIREKV 97 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---HH-HTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC---ch-HHHHHHH
Confidence 45699999999999999987632 4599999999999999999999864332 1111111111100 00 0001111
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cCCCc
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HGVDE 238 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~~~~ 238 (373)
....... ....+++.++++||++.. .....+...+.....++++|+||...... .. .....
T Consensus 98 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 98 KEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1100000 011256789999999753 33333333222223467888888765321 11 01224
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
.+.+.+++.++...++...+...... ...+....+++.++|+|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 78999999999999998776432211 234668889999999999766554443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.20 E-value=7.4e-10 Score=99.09 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=112.9
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
...++|++..++.+...+..+.. +.+.|+|++|+|||++|+.+++.+... +...+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------------ 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------------ 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------------
Confidence 35699999999999998876532 348999999999999999999886322 221122112111000
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHh--h-CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-cC
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSR--L-RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMA-HG 235 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~-~~ 235 (373)
..........+... + .+++.++|+|+++.. .....+...+.....++.+|++|....- ... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 00111111111111 1 255789999999753 3445555555444457778888766531 111 12
Q ss_pred CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 236 VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 236 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
....+.+.+++.++...++...+...... ...+....+++.++|++..+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33589999999999999998776432222 2345678899999999987655443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.15 E-value=7.9e-10 Score=101.25 Aligned_cols=195 Identities=14% Similarity=0.104 Sum_probs=111.5
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
...++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+........ ..+... .....+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~--~~~~~~-------~~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVC-------DNCREIEQ 84 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS--SCCSSS-------HHHHHHHT
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--CCCccc-------HHHHHHhc
Confidence 3569999999999999997652 2357889999999999999999987753321100 000000 00000000
Q ss_pred H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhh-H
Q 017364 164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHL-L 231 (373)
Q Consensus 164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~-~ 231 (373)
. +............. ...+...+ .+++.++|+||++. ......+...+.....+..+|++|.+..- .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred cCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0 00000000001111 22222222 34578999999964 33344443333222346677777765431 1
Q ss_pred hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
.. ......+.+.+++.++..+++...+...... ...+....+++.++|+|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 1233688999999999999998765321111 2245678899999999998876653
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.13 E-value=2.1e-09 Score=96.50 Aligned_cols=179 Identities=18% Similarity=0.100 Sum_probs=106.5
Q ss_pred cccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
....++|++..++.+...+... ......+.|+|++|+|||+||+.+++.....| .++ +.... ....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~---~~~~---- 78 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAI---EKPG---- 78 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTC---CSHH----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ecccc---CChH----
Confidence 3467999999988888877521 12236689999999999999999998764221 222 21111 1111
Q ss_pred HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCC------------------CCCCc
Q 017364 160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDW------------------FGIGS 219 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~------------------~~~g~ 219 (373)
.+... +... ...+.+|+||+++... ....+...+.. ..++.
T Consensus 79 ~l~~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 79 DLAAI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp HHHHH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred HHHHH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11111 1110 1345689999996532 22222211100 00235
Q ss_pred EEEEEeCChhhHh-h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 220 RIFITSRDKHLLM-A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 220 ~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
.+|.+|....... . ......+.+++++.++...++...+...... ...+....+++.++|+|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5666666432111 1 1123578999999999999998776432222 234668889999999999988777655
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.02 E-value=6.8e-09 Score=85.33 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=41.7
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...++||+.+++.+...+..+. .+.+.|+|++|+|||+||+.+++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3569999999999999987643 366899999999999999999998643
No 22
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=5.8e-09 Score=92.24 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=97.6
Q ss_pred cCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc------ceEEEeechhhhcccCHHH
Q 017364 85 KELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE------ASCFLANVREISKKSGLVF 156 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~ 156 (373)
..+.||++|++.+...|.+. ...++.+.|+|++|+|||++++.+++.+..... ..+...++ ....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc---~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA---LELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET---TCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec---cccCCHHH
Confidence 34899999999999877642 234578899999999999999999998754321 11111222 22334455
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHh--hCCCceEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCChh--
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR--LRHKKVLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRDKH-- 229 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~~~-- 229 (373)
....++.++.+...........+...+... -.+++++++||+++.. +.+-.+............+|.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 666777776554322212222222222221 1456799999998753 333333321000011233444443321
Q ss_pred --hH-----hhcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 230 --LL-----MAHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 230 --~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
.+ ..+ ....+.++|++.+|..+++..++
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 11 122 12478999999999999998776
No 23
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.00 E-value=4.7e-08 Score=85.30 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=92.8
Q ss_pred cCcccchhhHHHHHH-------HHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364 85 KELVGLDSRLEKLRF-------LINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF 156 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~-------~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 156 (373)
..++|+...++.+.. .+.. .....+.+.|+|++|+|||+||+.+++..... .+ .+....... ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~~-~i~~~~~~~-g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--FI-KICSPDKMI-GFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--EE-EEECGGGCT-TCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--EE-EEeCHHHhc-CCchHH
Confidence 457888776665554 3321 23346789999999999999999999875322 11 111111000 000000
Q ss_pred HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---------------HHHHHHhcCCCCCCCCcEE
Q 017364 157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---------------QQLESLAGKHDWFGIGSRI 221 (373)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------------~~l~~l~~~~~~~~~g~~i 221 (373)
. .......+.......+.+|+||+++.. ..+..+.......+....|
T Consensus 109 ~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 109 K------------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp H------------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred H------------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0 001111222333466889999998654 2233333332222334556
Q ss_pred EEEeCChhhHhhc----CCCceEeCCCCCH-hHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 017364 222 FITSRDKHLLMAH----GVDEVYMHEHLNY-DEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL 282 (373)
Q Consensus 222 liTtR~~~~~~~~----~~~~~~~l~~L~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 282 (373)
|.||......... .....+.+++++. ++...++.... . . ..+....+++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence 7777776544431 1245788999988 66666655432 1 1 134577888888884
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=3e-08 Score=89.97 Aligned_cols=195 Identities=10% Similarity=0.092 Sum_probs=109.0
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeechhhhcccCHHHHHHH
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
....++|++..++.+...+..+.. +.+.|+|++|+||||+|+.+++.+... +...+...+.. ....... ..+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~-~~~ 108 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERGISI-VRE 108 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCCHHH-HTT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccchHH-HHH
Confidence 345799999999999999886632 338999999999999999999876421 22222221111 1111111 111
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhhc-CC
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMAH-GV 236 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~~-~~ 236 (373)
............... . .....-...+.++++|+++.. .....+...+.......++|++|....- .... ..
T Consensus 109 ~~~~~~~~~~~~~~~--~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSK--H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCT--T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccch--h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 111111110000000 0 001111245579999998642 2223332222111235667777754421 1110 11
Q ss_pred CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 237 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
...+.+.+++.++....+...+...... ...+..+.|++.++|+|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2478999999999999998776432221 224678899999999998755544
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.99 E-value=1.5e-09 Score=92.80 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=101.4
Q ss_pred cCcccch---hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELVGLD---SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~vGR~---~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
..|+|+. ..++.+....... ..+.+.|+|++|+||||||+.+++..........++. ........
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~--------- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS--------- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH---------
Confidence 5677743 4566676666543 2378999999999999999999998765544444443 22211100
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCC-cEEEEEeCChh----
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIG-SRIFITSRDKH---- 229 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g-~~iliTtR~~~---- 229 (373)
... + .. ..++.+|++||++... .+..++.... ..+ .++|+||+...
T Consensus 96 ---------------~~~---~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~--~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 ---------------TAL---L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA--EQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ---------------GGG---G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH--HHCSCEEEEEESSCTTTTT
T ss_pred ---------------HHH---H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCCeEEEEcCCCHHHHH
Confidence 000 0 01 1345689999986431 1222221111 112 24777776432
Q ss_pred -----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364 230 -----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293 (373)
Q Consensus 230 -----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 293 (373)
+.........+.+++++.++..+++...+...... ...+..+.+++.++|++..+..+...+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~~ 220 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLDRL 220 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 11111122678999999999999998776322211 224567889999999988776665443
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.97 E-value=3e-09 Score=93.58 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred cccCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc
Q 017364 83 TLKELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK 151 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 151 (373)
....++|.+..++.+...+.. +....+.+.|+|++|+|||+||+.+++.....+ ...........
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~~ 90 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELVKK 90 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGCCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHHHh
Confidence 345799999999998877642 112346799999999999999999998764322 22122111111
Q ss_pred cCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--
Q 017364 152 SGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD-- 213 (373)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~-- 213 (373)
.. .. ........+.......+.+|+||+++.. ..+..++....
T Consensus 91 ~~-~~------------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 91 FI-GE------------------GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp ST-TH------------------HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred cc-ch------------------HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00 00 0011111222233456789999999653 12333332211
Q ss_pred CCCCCcEEEEEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHH
Q 017364 214 WFGIGSRIFITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALK 287 (373)
Q Consensus 214 ~~~~g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~ 287 (373)
....+..||.||....... .......+.+++++.++..+++........... ......++..+.| .|-.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHH
Confidence 1123566777777553221 112334789999999999999988764322111 1125667777777 455666
Q ss_pred HHHH
Q 017364 288 VLGS 291 (373)
Q Consensus 288 ~~~~ 291 (373)
.+..
T Consensus 229 ~l~~ 232 (285)
T 3h4m_A 229 AICT 232 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.94 E-value=8.6e-08 Score=87.05 Aligned_cols=203 Identities=11% Similarity=0.032 Sum_probs=113.0
Q ss_pred hhHHHhhhhhcccccccCccccccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 62 EPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 62 ~~~~~~~~~~~v~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+++.+...+....+ +..-..++|.+..++.+...+.. .....+.+.|+|++|+|||+||+.++..
T Consensus 63 ~~~~~~~i~~~i~~~~~--~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP--PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CHHHHHHHHHHTBCCSC--CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC--CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44555555544443322 22335699999999988887642 1122467999999999999999999987
Q ss_pred HhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHH-HHHHhhCCCceEEEecccccH--------
Q 017364 132 ISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMN-MIRSRLRHKKVLLVIDDVIEL-------- 202 (373)
Q Consensus 132 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~-------- 202 (373)
... .++..+......... ........ .+.......+.+|+||+++..
T Consensus 141 ~~~----~~~~i~~~~l~~~~~--------------------g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 141 SGA----TFFSISASSLTSKWV--------------------GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp TTC----EEEEEEGGGGCCSST--------------------THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----
T ss_pred cCC----eEEEEehHHhhcccc--------------------chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc
Confidence 632 222222222111100 00011111 112222356789999999543
Q ss_pred -----HHHHHHhcC----CCCCCCCcEEEEEeCChhhH---hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHH
Q 017364 203 -----QQLESLAGK----HDWFGIGSRIFITSRDKHLL---MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQ 270 (373)
Q Consensus 203 -----~~l~~l~~~----~~~~~~g~~iliTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~ 270 (373)
..+..++.. ......+..||.||...... ..-.....+.++..+.++..+++...+...... ...+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~ 274 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEE 274 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHH
Confidence 112222221 11112345566666554221 111344578899999999999987766332211 1235
Q ss_pred HHHHHHHHhCC-CchHHHHHHHH
Q 017364 271 LSKSVVKYAGG-LPLALKVLGSF 292 (373)
Q Consensus 271 ~~~~i~~~~~g-~Plal~~~~~~ 292 (373)
....+++.+.| .+-.|..++..
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 67889999988 55667777654
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.93 E-value=2.5e-08 Score=91.12 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=107.2
Q ss_pred ccCcccchhhHHHH---HHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 84 LKELVGLDSRLEKL---RFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 84 ~~~~vGR~~~~~~l---~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
...++|++...+.+ ...+..+....+.+.|+|++|+|||+||+.+++.+....+.... ....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI-AGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE-EGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc-cchhhhhcccchhHHHHH
Confidence 45799999886664 44555543334689999999999999999999987643222111 111111112222222222
Q ss_pred HHHHHhCC--------------------CC--------CC-CcchhhhHHHHHHhh-----CCC----ceEEEecccccH
Q 017364 161 LISQLLNL--------------------PD--------SG-VWNVYDGMNMIRSRL-----RHK----KVLLVIDDVIEL 202 (373)
Q Consensus 161 ~~~~~~~~--------------------~~--------~~-~~~~~~~~~~l~~~l-----~~~----~~LlvlDdv~~~ 202 (373)
.+....+. .. .. ..........+.... .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221110 00 00 000111111121111 122 459999999743
Q ss_pred --HHHHHHhcCCCCCCCCcEEEEEeCC-----------------hhhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCC
Q 017364 203 --QQLESLAGKHDWFGIGSRIFITSRD-----------------KHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHK 263 (373)
Q Consensus 203 --~~l~~l~~~~~~~~~g~~iliTtR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~ 263 (373)
.....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+.....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3344444333322223 34444431 11222 2245799999999999999877643222
Q ss_pred CCchHHHHHHHHHHHhC-CCchHHHHHHHH
Q 017364 264 PWKGYEQLSKSVVKYAG-GLPLALKVLGSF 292 (373)
Q Consensus 264 ~~~~~~~~~~~i~~~~~-g~Plal~~~~~~ 292 (373)
. ...+..+.+++.+. |.|..+..+...
T Consensus 278 ~--~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 278 E--MSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp C--BCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 2 23456888999998 888877666544
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.91 E-value=3.1e-08 Score=92.42 Aligned_cols=202 Identities=18% Similarity=0.115 Sum_probs=111.2
Q ss_pred cCcc-cchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHHHH
Q 017364 85 KELV-GLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 85 ~~~v-GR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (373)
..|+ |.... ...+......... ...+.|+|++|+||||||+.+++.+...++.. +.+.+... +...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~---------~~~~ 174 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK---------FLND 174 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH---------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH---------HHHH
Confidence 3465 65543 3333333333221 56799999999999999999999876554222 22222211 1222
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----HHHHHhcCCCC-CCCCcEEEEEeCChh------
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----QLESLAGKHDW-FGIGSRIFITSRDKH------ 229 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~l~~l~~~~~~-~~~g~~iliTtR~~~------ 229 (373)
+...+... ....+...+..++.+|+|||++... ..+.+...+.. ...|..||+||++..
T Consensus 175 ~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 175 LVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 22222111 1222344444367799999995422 22222221100 123667888888632
Q ss_pred ---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCH
Q 017364 230 ---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTI 298 (373)
Q Consensus 230 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~ 298 (373)
+...+.....+.+++++.++..+++...+...... ...+....|+..+.|++..+.-+...+ .+ -+.
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~ 322 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDL 322 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 22223233578899999999999998776321111 112457788899999998765544332 12 244
Q ss_pred HHHHHHHHHh
Q 017364 299 AEWESALQRL 308 (373)
Q Consensus 299 ~~~~~~l~~l 308 (373)
+.+..++..+
T Consensus 323 ~~~~~~l~~~ 332 (440)
T 2z4s_A 323 KEAILLLKDF 332 (440)
T ss_dssp HHHHHHTSTT
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.89 E-value=1.2e-07 Score=84.81 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=105.7
Q ss_pred cCcccchhhHHHHHHHHh----------cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLIN----------KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+..++.+...+. ......+-+.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~--- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK--- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTT---
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhc---
Confidence 568999999988888772 112224679999999999999999999876432 222222111100
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccHH-------------HHHHHh---cCCCCCCC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIELQ-------------QLESLA---GKHDWFGI 217 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~---~~~~~~~~ 217 (373)
. .......+ ..+.......+.+|+||+++... ....++ ........
T Consensus 91 ----------~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 91 ----------W-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp ----------T-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred ----------c-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 0 00111111 11222224567899999997431 122222 21111234
Q ss_pred CcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHHHHh
Q 017364 218 GSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLGSFL 293 (373)
Q Consensus 218 g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l 293 (373)
+..||.||.....+. .-.....+.++..+.++-.+++...+...... ........+++.+.| .+-.|..++...
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 566666776543211 01345678899999999999998877443222 123457788888887 455666665443
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.88 E-value=1.2e-07 Score=82.16 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=100.3
Q ss_pred cCcccchhhHHHHHHHHh---cC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLIN---KG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+...+.+...+. .. ....+.+.|+|++|+|||+||+.+++..... +...+.........-
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhccC
Confidence 468898887777765543 11 1224568899999999999999999876432 222222211110000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-----------------HHHHHHhcCCCC--C
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-----------------QQLESLAGKHDW--F 215 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------------~~l~~l~~~~~~--~ 215 (373)
.........+.......+.+|+||+++.. ..+..++..+.. .
T Consensus 82 -------------------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 82 -------------------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -------------------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00011112223333456789999999754 112333322111 1
Q ss_pred CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364 216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL 289 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 289 (373)
..+..+|.||........ ......+.+++++.++..+++...+...... .........+.+.+.|++- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 235566667765432211 1234678899999999999998776332222 1222235778888888754 55555
Q ss_pred HHH
Q 017364 290 GSF 292 (373)
Q Consensus 290 ~~~ 292 (373)
...
T Consensus 222 ~~~ 224 (262)
T 2qz4_A 222 CNE 224 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=2.6e-08 Score=90.50 Aligned_cols=197 Identities=12% Similarity=0.054 Sum_probs=104.8
Q ss_pred ccCcccchhhHHHHHHHH-hcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeech----------------
Q 017364 84 LKELVGLDSRLEKLRFLI-NKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVR---------------- 146 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~---------------- 146 (373)
-..++|.+..++.+...+ ..+. ... +.|+|++|+||||+++.+++.+.......+.+....
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 356999999999999888 5442 234 899999999999999999996532211111110000
Q ss_pred ----hhhc-ccC--HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCC
Q 017364 147 ----EISK-KSG--LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGI 217 (373)
Q Consensus 147 ----~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~ 217 (373)
.... ... .....+..+..+...... .... .+. .+..++-++|+|+++.. .....+...+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 0000 000 000111222221110000 0000 000 01335679999998642 222222222211124
Q ss_pred CcEEEEEeCChhh-Hhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCchHHHHHHH
Q 017364 218 GSRIFITSRDKHL-LMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGY-EQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 218 g~~iliTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
++.+|++|++... ... ......+.+.+++.++....+...+...... .. .+....|++.++|.+..+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6778888886431 111 1123679999999999999998766321111 11 35678899999999987766553
No 33
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.3e-07 Score=90.19 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=103.7
Q ss_pred ccCcccchhhHHHHHHHHhcCC---------------CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhh
Q 017364 84 LKELVGLDSRLEKLRFLINKGP---------------TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREI 148 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 148 (373)
...++|++..++.+..++.... ...+.+.|+|++|+||||+|+.+++.+. ..+...+..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s-- 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNAS-- 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTT--
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCC--
Confidence 3579999999999999887410 1247899999999999999999998773 122222221
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH--HhhCCCceEEEecccccH--------HHHHHHhcCCCCCCCC
Q 017364 149 SKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR--SRLRHKKVLLVIDDVIEL--------QQLESLAGKHDWFGIG 218 (373)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~~~~LlvlDdv~~~--------~~l~~l~~~~~~~~~g 218 (373)
..... ......+....... +......... .....++.+|++|+++.. ..+..++... +
T Consensus 112 -~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-----~ 179 (516)
T 1sxj_A 112 -DVRSK-TLLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-----S 179 (516)
T ss_dssp -SCCCH-HHHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-----S
T ss_pred -CcchH-HHHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-----C
Confidence 11111 11111111111100 0000000000 011356789999999643 2333333321 2
Q ss_pred cEEEEEeCChh---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 219 SRIFITSRDKH---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 219 ~~iliTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
..+|+++.+.. +.........+.+++++.++..+++...+...... ...+....|++.++|.+..+..+..
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33555554432 11112234578999999999999887765321111 1123577899999996655444433
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.85 E-value=2.9e-07 Score=83.42 Aligned_cols=183 Identities=14% Similarity=0.084 Sum_probs=103.5
Q ss_pred cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+..++.+...+.. .....+-+.|+|++|+|||+||+.+++..... ++..+...+...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~--- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK--- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh---
Confidence 5689999988888876621 11123558999999999999999999987432 222222111100
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHhcC---CCCCCCC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLAGK---HDWFGIG 218 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~~~---~~~~~~g 218 (373)
..+ .........+.......+.+|+||+++... ....++.. ......+
T Consensus 124 ----------~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 124 ----------WMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp ----------C---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred ----------hcc------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 000 001111111222224578899999997432 12222221 1111235
Q ss_pred cEEEEEeCChhhH---hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH
Q 017364 219 SRIFITSRDKHLL---MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF 292 (373)
Q Consensus 219 ~~iliTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 292 (373)
..||.||...... ..-.....+.++..+.++..+++.......... ........|++.+.|. +-.|..++..
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5566666644211 111355678899999999999998776432211 1234578889999884 5556666543
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.85 E-value=4.5e-08 Score=88.26 Aligned_cols=176 Identities=18% Similarity=0.105 Sum_probs=104.8
Q ss_pred ccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
...++|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| ...+.... ....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~---~~~~----- 95 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI---EKSG----- 95 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC---CSHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc---cchh-----
Confidence 457999999999988888642 22345689999999999999999988754332 11121111 1100
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHh---cCCC---------------CCCCCcE
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLA---GKHD---------------WFGIGSR 220 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~---~~~~---------------~~~~g~~ 220 (373)
.....+.. ..++.+|+||+++.. .....+. .... ...++..
T Consensus 96 -----------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 96 -----------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -----------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -----------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111111 235678999999743 2222222 1110 0011345
Q ss_pred EEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 221 IFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 221 iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
+|.+|....... .......+.+++++.++...++...+.... .....+..+.+++.+.|+|..+..+...
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 666666532211 112346899999999999999987763322 1123466788889999999776655544
No 36
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.84 E-value=5e-08 Score=90.93 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=105.8
Q ss_pred cccCcccchhhH---HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364 83 TLKELVGLDSRL---EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK 159 (373)
Q Consensus 83 ~~~~~vGR~~~~---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 159 (373)
.-..++|.+..+ +.+...+..+.- +.+.|+|++|+||||||+.+++.....|... +.. ...... .+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l----~a~----~~~~~~-ir 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHL--HSMILWGPPGTGKTTLAEVIARYANADVERI----SAV----TSGVKE-IR 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE----ETT----TCCHHH-HH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE----Eec----cCCHHH-HH
Confidence 345799999888 788888886633 6799999999999999999998775433211 110 111111 11
Q ss_pred HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEE-EeCChhh--H-hh
Q 017364 160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFI-TSRDKHL--L-MA 233 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~ili-TtR~~~~--~-~~ 233 (373)
.++... ......+++.+|+||+++... ..+.++..+.. ....+|. ||.+... . ..
T Consensus 93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 111110 011124567899999997532 22223322221 1233444 4444421 1 11
Q ss_pred cCCCceEeCCCCCHhHHHHHHHHhhcCCC-----CCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364 234 HGVDEVYMHEHLNYDEALGLFCLKAFKSH-----KPWKGYEQLSKSVVKYAGGLPLALKVLGSF 292 (373)
Q Consensus 234 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 292 (373)
......+.+.+++.++...++........ .......+..+.+++.++|++..+..+...
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 12335788999999999999987764311 112234567888999999999877655543
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.82 E-value=4.8e-07 Score=80.80 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=103.7
Q ss_pred cCcccchhhHHHHHHHHhc---------C-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK---------G-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~---------~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+...+.+...+.. + ....+-+.|+|++|+|||+||+.+++.... ..++..+.......
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~--- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK--- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh---
Confidence 4688888888877766521 1 122367999999999999999999987621 11222111111000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcC---CCCCCCC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGK---HDWFGIG 218 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~---~~~~~~g 218 (373)
. ...........+...-..++.+|+||+++.. .....++.. ......+
T Consensus 86 --------------~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 86 --------------W--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------S--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------h--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0001111111222222456789999999754 112222221 1111235
Q ss_pred cEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHHh
Q 017364 219 SRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSFL 293 (373)
Q Consensus 219 ~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l 293 (373)
..||.||....... .-.....+.++..+.++..+++.......... ........|++.+.|+ +-.|..++...
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55665665432111 11355678899999999999998776432211 1234578899999887 44576666543
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.81 E-value=3.6e-07 Score=81.80 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=97.7
Q ss_pred cCcc-cchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364 85 KELV-GLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL 161 (373)
Q Consensus 85 ~~~v-GR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (373)
+.|+ |.... ...+.............+.|+|++|+||||||+.+++.+.......+++. ... +...+
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~---------~~~~~ 80 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADD---------FAQAM 80 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHH---------HHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHH---------HHHHH
Confidence 3455 54432 44445555443223467899999999999999999998754422333332 211 11122
Q ss_pred HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----HHHHHhcCCC-CCCCCcEEEEEeCChh-------
Q 017364 162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----QLESLAGKHD-WFGIGSRIFITSRDKH------- 229 (373)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~l~~l~~~~~-~~~~g~~iliTtR~~~------- 229 (373)
...+.. .....+...+. ++.+|+|||++... ....+...+. ....+..+|+|+.+..
T Consensus 81 ~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 81 VEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 222110 01112222222 36689999986432 1122211110 0123556888776432
Q ss_pred --hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 230 --LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 230 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
+...+.....+.+++ +.++..+++...+...... ...+..+.+++.+ |++-.+..+
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHHHH
Confidence 222222335789999 9999999998876432222 2245678888888 887654443
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.79 E-value=6.2e-08 Score=79.08 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...++||+.+++.+...+.... .+.+.|+|++|+|||+||+.+++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3569999999999999987643 366799999999999999999998754
No 40
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.78 E-value=3.7e-07 Score=82.09 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH----H-
Q 017364 91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ----L- 165 (373)
Q Consensus 91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 165 (373)
+...+.+...+..+. -.+.+.++|++|+|||++|+.+++.+....... .. .+ +.......+... +
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~-~c-------~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK-SC-------GHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB-CC-------SCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC-CC-------CCCHHHHHHhcCCCCCEE
Confidence 345667777776542 246799999999999999999999865332110 00 00 000000000000 0
Q ss_pred -hCCC-CCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-c
Q 017364 166 -LNLP-DSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMA-H 234 (373)
Q Consensus 166 -~~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~-~ 234 (373)
.... .......+... .+.+.+ .+++-++|+|+++. ......++..+.....++.+|++|.+.. +... .
T Consensus 78 ~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000 00111122211 222222 34567899999974 3334444444433345677777777653 2211 1
Q ss_pred CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 235 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
.....+.+.+++.++..+++.... . ...+.+..+++.++|.|..+..+.
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 233579999999999999998775 1 123456789999999998765543
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.77 E-value=2.5e-07 Score=85.06 Aligned_cols=184 Identities=15% Similarity=0.059 Sum_probs=102.3
Q ss_pred ccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
-..++|.+..++.+...+.. .....+.+.|+|++|+|||+||+.++..... .++..++......
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSK-- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC-----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhcc--
Confidence 35799999999999887731 0112367999999999999999999887542 2222222111100
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcC----CCCCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGK----HDWFG 216 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~----~~~~~ 216 (373)
. .+ .........+.......+.+|+||+++.. .....++.. .....
T Consensus 188 ---~--------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 188 ---Y--------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred ---c--------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 00 00011111122222345679999999753 111122111 11112
Q ss_pred CCcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHHHHH
Q 017364 217 IGSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVLGSF 292 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 292 (373)
....||.||.....+. .-.....+.++..+.++...++...+...... ...+....+++.+.|+.- .|..+...
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2455666665432211 11344578899999999999998776432222 223467889999988655 66666544
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=6.2e-07 Score=80.83 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=103.2
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI 162 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (373)
-..++|.+..++.+...+..+. .+.+.++|++|+||||+|+.+++.+.... ...+.-.+. +.......+ +..+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~i-r~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVV-RNQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHH-HTHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHH-HHHH
Confidence 3458899999999999988763 23389999999999999999999865331 111111111 111111111 1111
Q ss_pred HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-cCCCc
Q 017364 163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMA-HGVDE 238 (373)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~-~~~~~ 238 (373)
..+.... ..+.+.+-++|+|+++.. .....+...+......+.+|+++....- ... .....
T Consensus 98 ~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 98 KDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 1111000 001234678999998642 2222232222111235667777655421 111 11234
Q ss_pred eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364 239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL 289 (373)
Q Consensus 239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 289 (373)
.+.+.+++.++..+.+...+...... ...+....+++.++|.+.-+..+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78899999999998887665222211 22456788999999998854433
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.75 E-value=3.9e-07 Score=80.47 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=102.7
Q ss_pred ccCcccchhhHHHHHHHHhcC----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSRLEKLRFLINKG----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
-..++|.+..++.+...+... ....+.+.|+|++|+|||+||+.++...... +...+........
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~~~~- 94 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLTSKY- 94 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTSSSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHhhcc-
Confidence 356999999998888776320 1123678999999999999999999876432 2222221111000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccH-------------HHHHHHh---cCCCC--
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIEL-------------QQLESLA---GKHDW-- 214 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~---~~~~~-- 214 (373)
........ ..+.......+.+|+||+++.. .....++ ...+.
T Consensus 95 -------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 95 -------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 00111111 1122222456789999998643 1111121 11111
Q ss_pred CCCCcEEEEEeCChh-----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHH
Q 017364 215 FGIGSRIFITSRDKH-----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKV 288 (373)
Q Consensus 215 ~~~g~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 288 (373)
.+.+..||.||.... +.. .....+.++..+.++...++...+...... ........+++.+.|++- .|..
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 123455666776543 222 244678888888888888887765332211 123457889999999886 6666
Q ss_pred HHHH
Q 017364 289 LGSF 292 (373)
Q Consensus 289 ~~~~ 292 (373)
+...
T Consensus 232 l~~~ 235 (297)
T 3b9p_A 232 LAKD 235 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.71 E-value=1.1e-07 Score=84.47 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=85.1
Q ss_pred CcccchhhHHHHHHHHhc-------------CCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEeechhhh
Q 017364 86 ELVGLDSRLEKLRFLINK-------------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLANVREIS 149 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~ 149 (373)
.++|.+...+.+...+.. .......+.|+|++|+|||+||+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 588988888777765541 1223457899999999999999999987654221 112222221111
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc-----------HHHHHHHhcCCCCCCCC
Q 017364 150 KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE-----------LQQLESLAGKHDWFGIG 218 (373)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-----------~~~l~~l~~~~~~~~~g 218 (373)
... . ..........+... .+.+|+||+++. ...+..+...+.....+
T Consensus 112 ~~~-------------~------g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQY-------------I------GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CSS-------------T------TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhc-------------c------cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 000 0 00001111112221 345999999973 33334444333222345
Q ss_pred cEEEEEeCChh----------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364 219 SRIFITSRDKH----------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF 259 (373)
Q Consensus 219 ~~iliTtR~~~----------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~ 259 (373)
..+|+||.... +... ....+.+++++.++..+++...+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 67777776432 1122 236789999999999999977763
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.71 E-value=8e-07 Score=82.99 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=106.4
Q ss_pred ccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
-..++|.+...+.+...+.. .....+.+.|+|++|+|||+||+.++..... ..++..+...+
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l----- 204 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDL----- 204 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHH-----
Confidence 35689999988888876621 1122467999999999999999999987621 12222111110
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCC---CCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDW---FGI 217 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~---~~~ 217 (373)
.....+.. .... ...+...-...+.+|+||+++.. .....++..+.. ...
T Consensus 205 --------~~~~~g~~---~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 205 --------VSKWLGES---EKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------C---CCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred --------HhhhcchH---HHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 01111111 1111 11222222456789999999753 233445544432 134
Q ss_pred CcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHHh
Q 017364 218 GSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSFL 293 (373)
Q Consensus 218 g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l 293 (373)
+..||.||....... .-.....+.++..+.++...++..+....... ........|++.+.|+ +-.|..++...
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 566666776543211 11345678899999999999998776432211 1234578899999884 55666665543
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.71 E-value=5e-07 Score=79.98 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=99.0
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..++|.+..++.+...+.. +-...+.+.|+|++|+|||+||+.+++..... +...+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~~------- 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGP------- 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEhH-------
Confidence 4689999888888776642 12234679999999999999999999876422 2221111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHH----------------HHHHhcCCC--CC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQ----------------LESLAGKHD--WF 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------l~~l~~~~~--~~ 215 (373)
.+.....+.. .......+.......+.+|+||+++.... ...++..+. ..
T Consensus 84 ------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 84 ------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp ------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred ------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1112222221 11122233333345689999999974221 122222111 01
Q ss_pred CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCchH
Q 017364 216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHK-PWKGYEQLSKSVVKYAGGLPLA 285 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla 285 (373)
..+..||.||........ ......+.++.++.++-.+++......... .... ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 235667777765532211 124467899999999999998776633221 1111 34566677777654
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.70 E-value=2e-07 Score=83.53 Aligned_cols=177 Identities=13% Similarity=0.075 Sum_probs=100.8
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS 163 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
-..++|.+..++.+..++..+. .++.+.+.|++|+|||++|+.+++.+... .+.+ +... .. .......+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i-~~~~----~~-~~~i~~~~~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFV-NGSD----CK-IDFVRGPLT 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEE-ETTT----CC-HHHHHTHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEE-cccc----cC-HHHHHHHHH
Confidence 4679999999999999998552 24678889999999999999999876422 1222 2111 11 111121111
Q ss_pred HHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH---HHHHHhcCCCCCCCCcEEEEEeCChhh-----HhhcC
Q 017364 164 QLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ---QLESLAGKHDWFGIGSRIFITSRDKHL-----LMAHG 235 (373)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~l~~l~~~~~~~~~g~~iliTtR~~~~-----~~~~~ 235 (373)
...... .+.+++.++++||++... ....+...+.....+..+|+||....- ...
T Consensus 95 ~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR-- 156 (324)
T 3u61_B 95 NFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR-- 156 (324)
T ss_dssp HHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred HHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence 110000 012367899999997543 333333322211235678888776531 122
Q ss_pred CCceEeCCCCCHhHHHHHH-------HHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 236 VDEVYMHEHLNYDEALGLF-------CLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 236 ~~~~~~l~~L~~~ea~~l~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
...+.+++++.++-.+++ ...+....... ...+....+++.++|++..+....
T Consensus 157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 247899999988843332 22221111111 112567889999999887554443
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.63 E-value=5.9e-07 Score=84.47 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=81.8
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 157 (373)
.+.+|||+.+++.+...+..... ..+.|+|++|+|||+||+.+++.+.... +..++..+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~--~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCcHHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------
Confidence 35699999999999999975433 5578999999999999999999875422 1122221111
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh---h-
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM---A- 233 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~---~- 233 (373)
....+. .. ......+...-..++.+|++| ...+....+.+.+. ....++|.+|....... .
T Consensus 246 -----~~~~g~---~e---~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 -----TKYRGE---FE---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ---------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----ccccch---HH---HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 000000 00 111122222334567899999 22233333444433 22345665555443110 0
Q ss_pred ---cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 234 ---HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 234 ---~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
......+.+++++.++...++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0122468999999999999998665
No 49
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.60 E-value=4.9e-07 Score=85.12 Aligned_cols=180 Identities=17% Similarity=0.115 Sum_probs=101.5
Q ss_pred cCcccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..++|.+..++.+...+... ....+-+.|+|++|+|||+||+.+++... ..++..++..+.....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhhhhhc
Confidence 45899999999888876521 23346799999999999999999988653 2223323322211100
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HH---HHHHhcCCCCCCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQ---LESLAGKHDWFGI 217 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~---l~~l~~~~~~~~~ 217 (373)
..........+.....+.+.+|+||+++.. .. +-.++.... ...
T Consensus 280 -------------------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~ 339 (489)
T 3hu3_A 280 -------------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (489)
T ss_dssp -------------------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTS
T ss_pred -------------------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCC
Confidence 001111222333444567789999998421 11 222222211 123
Q ss_pred CcEEEEEeCChhhH-----hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHH
Q 017364 218 GSRIFITSRDKHLL-----MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGS 291 (373)
Q Consensus 218 g~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 291 (373)
+..||.||...... ........+.++..+.++-.+++..++....... .....++++.+.|+ +-.|..+..
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHHH
Confidence 45566666655321 1112345789999999999999987763322111 11145567777775 545555543
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.9e-06 Score=78.12 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=97.3
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS 152 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 152 (373)
..+.|-++..+.|...+.- +-..++-|.++||+|+|||.||+.+++.....| +......+.. ..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 3467788877777665431 223346699999999999999999999765442 2222221111 11
Q ss_pred C-HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--
Q 017364 153 G-LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD-- 213 (373)
Q Consensus 153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~-- 213 (373)
+ ..... ...+...-...+++|++|+++... .+..++..+.
T Consensus 224 Gese~~v---------------------r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 224 GEGSRMV---------------------RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp THHHHHH---------------------HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred chHHHHH---------------------HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 1 11111 112222335678999999886310 1233332221
Q ss_pred CCCCCcEEEEEeCChhhH-----hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364 214 WFGIGSRIFITSRDKHLL-----MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 214 ~~~~g~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
....+..||.||...+.+ .....+..+.++..+.++-.++|+.+........ .. ....+++.+.|+--
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-dv--dl~~lA~~t~G~SG 355 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-GI--NLRKVAEKMNGCSG 355 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-SC--CHHHHHHHCCSCCH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-cC--CHHHHHHHCCCCCH
Confidence 112345566666644322 1124567899999999999999987763322111 11 15667788887654
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.52 E-value=2.3e-06 Score=73.84 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=93.8
Q ss_pred cCcccchhhHHHHHHHHhc---C-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK---G-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+...+.+...+.. . ....+-+.|+|++|+||||||+.+++.....| +.+ +........
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~~-- 85 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEMF-- 85 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTSC--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHHh--
Confidence 5688988877666654321 1 11134589999999999999999998764322 222 111111000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--CCC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--WFG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~~~ 216 (373)
. ..........+.......+.++++|+++.. ..+..++..+. ...
T Consensus 86 -----------~------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 86 -----------V------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp -----------C------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred -----------h------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 001111222233333456789999998432 12222322111 012
Q ss_pred CCcEEEEEeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHH
Q 017364 217 IGSRIFITSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLG 290 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 290 (373)
.+..||.||....... . ......+.++..+.++-.+++...........+ .....++..+.| ++--|..+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHHH
Confidence 3455666776543211 1 123457888888888888888766532111111 113445666667 665555443
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.50 E-value=2.1e-07 Score=72.91 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 86 ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++|+...++.+...+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999998888775322222558899999999999999998754
No 53
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.50 E-value=1.8e-06 Score=76.64 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.4
Q ss_pred cCcccchhhHHHHHHHHhc------------CCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINK------------GPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999988888877653 011235688999999999999999998774
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.50 E-value=1.7e-06 Score=86.65 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=88.3
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
...++||+.+++.+...|..... ..+.|+|++|+|||++|+.+++.+... ....++..+....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~--~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCccCCHHHHHHHHHHHhccCC--CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 35699999999999999876533 567899999999999999999986432 1222332211110
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH----------HHHHHHhcCCCCCCCCcEEEEEeC
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL----------QQLESLAGKHDWFGIGSRIFITSR 226 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~l~~l~~~~~~~~~g~~iliTtR 226 (373)
... ..........+..+...+ ..++.+|++|+++.. .....++...-. ..+..+|.+|.
T Consensus 254 --------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~ 323 (758)
T 1r6b_X 254 --------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_dssp ---------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred --------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence 000 001112222222333333 345789999999743 222233332221 23455666665
Q ss_pred ChhhHhhc-------CCCceEeCCCCCHhHHHHHHHHhh
Q 017364 227 DKHLLMAH-------GVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 227 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
........ .....+.+++++.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 44321111 112368899999999998887554
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.49 E-value=9.6e-07 Score=89.36 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=41.4
Q ss_pred ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...++||+.+++.+...+..... +.+.|+|++|+|||+||+.+++.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~--~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35699999999999999876433 55789999999999999999998743
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.3e-06 Score=77.14 Aligned_cols=146 Identities=15% Similarity=0.033 Sum_probs=85.8
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh---ccccceEEEeechhhhcccCHHHHHHHHHHHH
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS---HEFEASCFLANVREISKKSGLVFLQKQLISQL 165 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
|-++.++.+...+..+. .+.+.++|++|+||||+|+.+++... ...+....+. .. ....... ..+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~--~~~~~id-~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE--GENIGID-DIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS--SSCBCHH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC--cCCCCHH-HHHHHHHHH
Confidence 44566788888888765 58899999999999999999987531 1122333332 10 0011111 122333332
Q ss_pred hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhcCCCceEeC
Q 017364 166 LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMAHGVDEVYMH 242 (373)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~~~~~~~~l 242 (373)
...+ ..+++-++|+|+++. ....+.++..+....+.+.+|++|.+. .+...+... .+++
T Consensus 75 ~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 75 NYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp TSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred hhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 1111 124466899999874 333444443333223567777777655 333333344 8999
Q ss_pred CCCCHhHHHHHHHHhh
Q 017364 243 EHLNYDEALGLFCLKA 258 (373)
Q Consensus 243 ~~L~~~ea~~l~~~~~ 258 (373)
.+++.++..+.+....
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.47 E-value=4.4e-06 Score=78.05 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+..++.+...+.. +..-++-+.|+|++|+|||+||+.+++..... ++..+...+.....-
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHHHhc
Confidence 4688988876666655431 11113458899999999999999999876432 222222221111000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCC--CC
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDW--FG 216 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~--~~ 216 (373)
.........+.......+.+|+||+++.. ..+..++..+.. ..
T Consensus 92 -------------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 92 -------------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred -------------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00111222344444567899999998542 123333322110 12
Q ss_pred CCcEEEEEeCChhhHhh--c---CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 217 IGSRIFITSRDKHLLMA--H---GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
.+..||.||.....+.. . .....+.+++.+.++-.+++..+........+. ....+...+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 35667777776643321 1 234578899999888888887665332211111 1445778888887
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.5e-06 Score=76.79 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=95.4
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-ccC
Q 017364 86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KSG 153 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~ 153 (373)
.+.|-++..+.|...+.- +-..++-|.++||+|+|||.||+.+++.....| +......+.. ..+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~vG 285 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVG 285 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSSS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccCC
Confidence 477788877777664321 223357799999999999999999999876432 2222222111 111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--CC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD--WF 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~--~~ 215 (373)
- +.......+...-...+++|++|+++... .+..++..+. ..
T Consensus 286 e--------------------sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 286 E--------------------GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp H--------------------HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred H--------------------HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 01111122233335678999999885310 1222222211 11
Q ss_pred CCCcEEEEEeCChhhH----h-hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 216 GIGSRIFITSRDKHLL----M-AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~----~-~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
..+..||.||.....+ . ..+.+..+.++..+.++-.++|+.+........ .. ..+.|++.|.|+-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GI--RWELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SC--CHHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CC--CHHHHHHHCCCCC
Confidence 2344455566544321 1 123567899999999999999987763322111 11 1456778888764
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.46 E-value=2.8e-05 Score=69.77 Aligned_cols=175 Identities=18% Similarity=0.151 Sum_probs=96.4
Q ss_pred ccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ 160 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
-..++|.+..++.+...+..+ ......++|+|++|+|||||++.+++.+...+. .... .. ......
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg-~~--~~~~~~---- 92 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSG-PV--LVKQGD---- 92 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEET-TT--CCSHHH----
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEec-hH--hcCHHH----
Confidence 356889888888888877643 222366999999999999999999998743221 1110 00 000000
Q ss_pred HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHh---cCCCC-----CC----------CCcE
Q 017364 161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLA---GKHDW-----FG----------IGSR 220 (373)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~---~~~~~-----~~----------~g~~ 220 (373)
... +...+ .++.++++|+++.. ...+.+. ..... .+ +...
T Consensus 93 ------------------l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 ------------------MAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------------HHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------------HHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 000 11111 23457778877532 1222221 11100 00 0122
Q ss_pred EEE-EeCChhhHh--hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364 221 IFI-TSRDKHLLM--AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291 (373)
Q Consensus 221 ili-TtR~~~~~~--~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 291 (373)
++. |++...+.. .........+++.+.++..+++.+.+...... ...+.+..|++.++|.|..+..+..
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHH
Confidence 332 333322211 11233468899999999999998776322211 3346688999999999986655443
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.44 E-value=6.7e-07 Score=72.74 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 90 LDSRLEKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
....++.+..++..-. .....++|+|++|+|||||++.+++.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344555555554321 12378999999999999999999998763
No 61
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.4e-06 Score=78.70 Aligned_cols=172 Identities=20% Similarity=0.200 Sum_probs=96.6
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS 152 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 152 (373)
..+.|-++..+.|...+.- +-..++-|.++||+|+|||+||+.+++.....| +......+.. ..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccccc
Confidence 3467888877777665431 223357799999999999999999999775432 2222222111 11
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--C
Q 017364 153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--W 214 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~ 214 (373)
+- +.......+...-...+++|++|+++.. ..+..++..+. .
T Consensus 257 Ge--------------------se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 257 GE--------------------SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SH--------------------HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hH--------------------HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 10 0111111222333567899999988631 01223332221 1
Q ss_pred CCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCch
Q 017364 215 FGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPL 284 (373)
Q Consensus 215 ~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 284 (373)
...+..||.||.....+.. ...+..+.++..+.++-.++|+.+..... ....+ ...+++.+.|+--
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence 1234567777765543322 11345788888899998899887763322 11111 4567777877654
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=4e-06 Score=77.10 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=90.4
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhh-hccc
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREI-SKKS 152 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~ 152 (373)
..+.|-+...+.|...+.. +-..++-+.++||+|+|||+||+.+++.....| +..+.... +...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence 3577888877777665431 223356799999999999999999999775432 22222211 1111
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--C
Q 017364 153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD--W 214 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~--~ 214 (373)
+- +...+...+...-...++++++|+++... .+..++.... .
T Consensus 248 Ge--------------------~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 248 GE--------------------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp SH--------------------HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ch--------------------hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 10 01111112222335678999999885311 1223322211 1
Q ss_pred CCCCcEEEEEeCChhhH----hh-cCCCceEeCCCC-CHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCc
Q 017364 215 FGIGSRIFITSRDKHLL----MA-HGVDEVYMHEHL-NYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 215 ~~~g~~iliTtR~~~~~----~~-~~~~~~~~l~~L-~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 283 (373)
...+..||.||.....+ .. ...+..+.++++ +.++-..+|..+..... .+..+ ...+++.+.|+-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 12355566677654321 11 123456778655 55555666665553222 11111 456777777754
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.39 E-value=3.1e-06 Score=75.11 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=40.2
Q ss_pred cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|.+..++.+...+.... .. ...+.|+|++|+|||++|+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 358899999888888776431 11 3579999999999999999999987544
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.37 E-value=5.1e-06 Score=83.08 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=82.4
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ 158 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 158 (373)
..+|||+.+++.+...+..... .-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~--~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCCCC--CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 5699999999999999976433 5588999999999999999999874321 122221111
Q ss_pred HHHHHHHhCCCCCCCcchh-hhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh----
Q 017364 159 KQLISQLLNLPDSGVWNVY-DGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA---- 233 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~---- 233 (373)
.....+ ... .....+......++.+|++| ...+....+.+.+. ....++|.+|........
T Consensus 245 ---g~~~~G-------~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRG-------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccc-------hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000000 111 11222333334677899999 22233333444433 234556666654431000
Q ss_pred ---cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 234 ---HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 234 ---~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
......+.+++++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0122568999999999999998654
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.8e-06 Score=78.13 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=94.3
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS 152 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 152 (373)
..+.|-++..+.|...+.. +-..++-|.++||+|+|||.||+.+++..... ++......+.. ..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhccc
Confidence 3577888877777664321 22335779999999999999999999976543 22222222111 11
Q ss_pred C-HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCCC
Q 017364 153 G-LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDWF 215 (373)
Q Consensus 153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~ 215 (373)
+ .....+. .+...-...+++|++|+++... .+..++..+..+
T Consensus 257 Gese~~ir~---------------------lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 257 GEGAKLVRD---------------------AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp SHHHHHHHH---------------------HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHH---------------------HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 1 1111111 1222224568999999985321 122333222211
Q ss_pred --CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCc
Q 017364 216 --GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 --~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 283 (373)
..+..||.||.....+.. ...+..+.++..+.++-.++|+.+..... ...-+ ...|++.+.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 234456656665543221 12345788999999998998876653221 11111 456777887754
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.34 E-value=7.7e-07 Score=77.31 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=82.7
Q ss_pred cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+..++.+...+.. +....+-+.|+|++|+|||+||+.+++.....|-. + +.......
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~--- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM--- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh---
Confidence 5689999887777766541 11112348899999999999999999876533211 1 11111000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-----------------HHHHHhcCCCCC--
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----------------QLESLAGKHDWF-- 215 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~l~~l~~~~~~~-- 215 (373)
..+.. ....... +.......+.+|+||+++... .+..++..+...
T Consensus 84 ----------~~~~~---~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 ----------FVGLG---ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ----------CSSSC---SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred ----------hcchH---HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00110 1111222 222223467899999996532 122333332211
Q ss_pred -CCCcEEEEEeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 216 -GIGSRIFITSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 216 -~~g~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
.....||.||....... . ......+.+++++.++..+++....
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 12245666666543211 1 1233567888999999999987765
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.33 E-value=6.2e-07 Score=70.43 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..++|+|++|+|||||++.++..........+++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 6899999999999999999999876532224444
No 68
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.8e-06 Score=74.50 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=93.9
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-ccC
Q 017364 86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KSG 153 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~ 153 (373)
.+.|-++..+.|...+.. +-.-++-|.++||+|+|||.||+.+++.....| +..+...+.. ..+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~vG 258 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYLG 258 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSSS
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccCc
Confidence 467788877777665431 222356799999999999999999999876432 2222221111 111
Q ss_pred -HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--C
Q 017364 154 -LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--W 214 (373)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~ 214 (373)
.....+ ..+...-...+++|++|+++.. ..+..++.... .
T Consensus 259 esek~ir---------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 259 DGPRLCR---------------------QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp HHHHHHH---------------------HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHH---------------------HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111111 1122223467899999988531 11223322211 1
Q ss_pred CCCCcEEEEEeCChhhHhhc-----CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 215 FGIGSRIFITSRDKHLLMAH-----GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 215 ~~~g~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
...+..||.||...+.++.. ..+..+.++..+.++-.++|+.+........ +. ..+.+++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~-dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSE-DV--NLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCS-CC--CHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCC-cC--CHHHHHHhCCCCC
Confidence 12345566666655433221 2335688888899999999987763322111 10 1456777777754
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.31 E-value=2.5e-06 Score=73.96 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=34.7
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|....++.+...+.........+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999888888766653222225688999999999999999988654
No 70
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.30 E-value=6.2e-06 Score=72.90 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=38.2
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|+...++.+...+..-......|.|+|++|+|||++|+.+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3589999999888887764222235688999999999999999988643
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.19 E-value=2.2e-05 Score=73.60 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=38.1
Q ss_pred ccCcccchhhHHHHHHH---HhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 84 LKELVGLDSRLEKLRFL---INKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~---l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...++|.+..++.+..+ +..+....+-+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36799999887765544 334433346789999999999999999998875
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.14 E-value=1.3e-05 Score=80.02 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=82.8
Q ss_pred cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL 157 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 157 (373)
..++|.+..++.+...+.... .. ...+.++|++|+|||++|+.+++.........+.+ ++..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 568999998888887776321 11 23699999999999999999999874332233333 333222211110
Q ss_pred HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCC-----CC------CCCCcEEEEE
Q 017364 158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKH-----DW------FGIGSRIFIT 224 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~-----~~------~~~g~~iliT 224 (373)
.......++. ....+|+||+++.. .....+...+ .. ...+.+||+|
T Consensus 568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 1111122222 23458999999642 2222222111 10 1235678888
Q ss_pred eCCh-----------------hhHhhcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 225 SRDK-----------------HLLMAHGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 225 tR~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
|... .+. ...+..+.+++|+.++...++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~--~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFI--NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHH--TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHH--hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 111 1234688999999999888876654
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.10 E-value=6.3e-07 Score=69.93 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=33.7
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
-.++|++..++.+...+..-......|.|+|++|+|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 458999998888888775321122458899999999999999987643
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.10 E-value=2.4e-05 Score=77.47 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=96.6
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS 152 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 152 (373)
..+.|-++.++.|...+.- +-..++-|.++||+|+|||+||+.+++.... .++..+...+.. ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhcccc
Confidence 3467788777777765431 1123577999999999999999999986543 233322222111 10
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHh---cCCCCCC
Q 017364 153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLA---GKHDWFG 216 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~---~~~~~~~ 216 (373)
+ .+...+...+.......+.+|+||+++... .+..++ ..+.. .
T Consensus 280 g--------------------ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-~ 338 (806)
T 3cf2_A 280 G--------------------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R 338 (806)
T ss_dssp T--------------------HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-G
T ss_pred h--------------------HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-c
Confidence 0 011112223344446778999999986421 122222 22211 1
Q ss_pred CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364 217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA 285 (373)
Q Consensus 217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 285 (373)
.+..||.||...+.... ......+.++..+.++-.++++.+........ .-....+++.+.|+.-+
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA 409 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence 23445556654432211 12456789999999999999987653321111 11156678888877543
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.09 E-value=0.00011 Score=63.12 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=77.6
Q ss_pred cCcccchhhHHHHHHHHhc--C--------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364 85 KELVGLDSRLEKLRFLINK--G--------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL 154 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 154 (373)
..++|.+.....+...... . -.-.+-++|+|++|+|||||++.+++.... ..+.+. .........
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~- 90 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV- 90 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSCT-
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHHh-
Confidence 4688887665555443321 0 001123899999999999999999987642 122221 111110000
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhhHHH-HHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--C
Q 017364 155 VFLQKQLISQLLNLPDSGVWNVYDGMNM-IRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--F 215 (373)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~ 215 (373)
......+.. +.......+.++++||++... .+..+...+.. .
T Consensus 91 -------------------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 91 -------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp -------------------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred -------------------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 000111111 222223456899999985321 12223222110 1
Q ss_pred CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364 216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
.....++.+|........ ......+.++..+.++-.+++....
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 123345556665544321 1245678899999988888887665
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.08 E-value=6.7e-05 Score=65.37 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=87.9
Q ss_pred ccCcccchhhHHHHHHHHhc--C--------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSRLEKLRFLINK--G--------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
...++|.+...+.+...... . -.-.+-++|+|++|+|||||++.++..... ..+.+. ...+.....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~ 114 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV 114 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHHh
Confidence 45688988776666554321 0 001123899999999999999999987652 222221 111110000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCCC-
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDWF- 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~~- 215 (373)
......+ ..+.......+.++++||++.. ..+..+...+...
T Consensus 115 --------------------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 115 --------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp --------------------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred --------------------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 0000111 1122222345689999998532 1122332222111
Q ss_pred -CCCcEEEEEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 216 -GIGSRIFITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 -~~g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
.....++.+|....... .......+.++..+.++-.+++...+.......+ .....++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 12234455666554322 1134567889999999888888766532111110 11344666666655
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.03 E-value=3.5e-05 Score=67.71 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.0
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.+.|+|++|+|||+||+.+++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999999874
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.02 E-value=0.00013 Score=68.57 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=90.5
Q ss_pred ccCcccchhhHHHHHHHHh---cC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 84 LKELVGLDSRLEKLRFLIN---KG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
...++|.+.....+..... .. ..-.+-+.|+|++|+|||+||+.++..... .++..+...+....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~~- 104 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMF- 104 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSSC-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHhh-
Confidence 3568998887666655432 11 011234899999999999999999987642 22222222211110
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh----CCCceEEEecccccH----------------HHHHHHhcCCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL----RHKKVLLVIDDVIEL----------------QQLESLAGKHD 213 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~----------------~~l~~l~~~~~ 213 (373)
.......+...+ ...+.++++|+++.. ..+..++..+.
T Consensus 105 ----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 ----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp ----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred ----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 000111122222 234579999998532 12333332221
Q ss_pred C--CCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 214 W--FGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 214 ~--~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
. ...+..++.+|.....+.. ......+.++..+.++-.+++..++....... . .....++..+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-S--STTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-H--HHHHHHHHhcCCCC
Confidence 1 1223445556665544321 12345788999999999998876653211111 1 11445666777766
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.93 E-value=0.00012 Score=63.63 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=67.4
Q ss_pred EEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHH-HHhhCC
Q 017364 111 IGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMI-RSRLRH 189 (373)
Q Consensus 111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~ 189 (373)
++|+|++|+|||||++.++...... .+.+. ........ .... ...+..+ ...-..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~-~~~~-------------------~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY-VGES-------------------ERAVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST-THHH-------------------HHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh-hhHH-------------------HHHHHHHHHHHHhc
Confidence 9999999999999999999876532 22222 11111100 0000 0011111 111134
Q ss_pred CceEEEecccccHH-------------HHHHHhcCCC--CCCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhH
Q 017364 190 KKVLLVIDDVIELQ-------------QLESLAGKHD--WFGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDE 249 (373)
Q Consensus 190 ~~~LlvlDdv~~~~-------------~l~~l~~~~~--~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~e 249 (373)
.+.++++|+++... ....+...+. .......++.+|........ ...+..+.++..+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 57889999886421 1122221111 01123445566766654322 1356778899999999
Q ss_pred HHHHHHHhh
Q 017364 250 ALGLFCLKA 258 (373)
Q Consensus 250 a~~l~~~~~ 258 (373)
-.++++...
T Consensus 183 r~~il~~~~ 191 (274)
T 2x8a_A 183 RLAILKTIT 191 (274)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998765
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.93 E-value=1.7e-05 Score=66.41 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=25.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+++|.|++|+|||||+..++. .....++|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 7899999999999999999998 2234455554
No 81
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.92 E-value=7.7e-06 Score=70.14 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 789999999999999999999865543
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.91 E-value=1.6e-05 Score=67.44 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|+|++|+|||||++.++..+.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKV 58 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 789999999999999999999866543
No 83
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.90 E-value=0.00016 Score=65.88 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..+.|+|++|+|||++|+.+++.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998763
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.90 E-value=0.00013 Score=73.21 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=84.5
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
..++|.+..++.+..++.. +-.....|+|+|++|+||||||+.+++.+...| +..+.........
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhhhh
Confidence 4689999998888887753 222346799999999999999999988654332 2222211111000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCCCCC
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDWFGI 217 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~~~~ 217 (373)
.. ........+.......+.++++|+++.. ..+-.++..... ..
T Consensus 280 -g~------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 280 -GE------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp -TH------------------HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred -hh------------------HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 00 0011111222333446789999998421 112222222221 12
Q ss_pred CcEEEEEeCChhhHhh-c----CCCceEeCCCCCHhHHHHHHHHhh
Q 017364 218 GSRIFITSRDKHLLMA-H----GVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 218 g~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
+..+|.||........ . .....+.+...+.++-.+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4556666665432211 1 233567888889999999987665
No 85
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.88 E-value=6.9e-05 Score=74.93 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=37.8
Q ss_pred cCcccchhhHHHHHHHHhcCC-------CCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 85 KELVGLDSRLEKLRFLINKGP-------TDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999998888877765321 112479999999999999999999877
No 86
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.85 E-value=7.7e-05 Score=62.91 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=23.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 789999999999999999999876544
No 87
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.85 E-value=0.00011 Score=70.35 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=36.7
Q ss_pred cCcccchhhHHHHHHHHh----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 85 KELVGLDSRLEKLRFLIN----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
...+|-+...+.+...+. ...-....++|+|++|+||||||+.++......|
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 347787776666644332 1111346899999999999999999999876543
No 88
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.84 E-value=2.7e-05 Score=70.11 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=65.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+++|.|++|+|||||++.++..+.+... .++.+.+..+....... ....... ...........+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~-~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQRE-VHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEE-BTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeee-eccccCCHHHHHHHHh
Confidence 68999999999999999999998766533 33333221111000000 0000000 0001122344788888
Q ss_pred CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364 188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL 231 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~ 231 (373)
...+-+|++|++.+.+.++.+.... ..|..+|+|+++.+..
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8899999999998777665544332 1266799999988665
No 89
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.83 E-value=2.2e-05 Score=66.76 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999987543
No 90
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.80 E-value=5.4e-06 Score=66.69 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEEeccCCcchhHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVV 128 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~ 128 (373)
.+++|+|++|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999953
No 91
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.80 E-value=2e-05 Score=67.82 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 78999999999999999999875543
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.80 E-value=7.7e-05 Score=64.22 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=60.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec--hhhhcccCHHHHHHHHHHH-HhCCCCCCCcchhhhHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV--REISKKSGLVFLQKQLISQ-LLNLPDSGVWNVYDGMNMIRS 185 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 185 (373)
.+++|+|++|+|||||++.++..+.+.+...+++... ....+... . +..+ ..+. +.......+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~----~v~q~~~gl------~~~~l~~~la~ 93 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S----IVNQREVGE------DTKSFADALRA 93 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S----EEEEEEBTT------TBSCHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--e----eeeHHHhCC------CHHHHHHHHHH
Confidence 8999999999999999999998876552333333211 00000000 0 0000 0000 01123445666
Q ss_pred hhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 186 RLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
.+...+-++++|+..+.+....++... ..|..|++|+++...
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 666677899999986655544443321 236678999998764
No 93
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.78 E-value=4.7e-05 Score=65.32 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999875443
No 94
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.78 E-value=0.00042 Score=55.85 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.8
Q ss_pred EEEEeccCCcchhHHHHHHHHHHh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 95
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.75 E-value=3.4e-05 Score=64.84 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999987544
No 96
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.75 E-value=4e-05 Score=64.92 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 78999999999999999999875443
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.74 E-value=4e-05 Score=64.66 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.+++|.|++|+|||||++.++.........+.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 7899999999999999999998766544455554
No 98
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.73 E-value=3.3e-05 Score=65.93 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 789999999999999999999876654
No 99
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.72 E-value=2.6e-05 Score=67.37 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-+.+
T Consensus 27 L~~vsl~i~~G----e~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 27 INDVSLHIASG----EMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEEEEEETT----CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44444444455 78999999999999999999875543
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.70 E-value=3.3e-05 Score=65.09 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999986543
No 101
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=0.00018 Score=72.83 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=39.0
Q ss_pred cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|.+..++.+...+.... +. ...+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999998888887775321 11 257999999999999999999998754
No 102
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.67 E-value=9.9e-05 Score=63.52 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++... +.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 789999999999999999999866 44
No 103
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.67 E-value=7.8e-05 Score=66.93 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.+..-..+
T Consensus 44 L~~vsl~i~~G----ei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 44 LNNVSLHVPAG----QIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEEEEECTT----CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEeeEEEEcCC----CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 44444444445 78999999999999999999875443
No 104
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.66 E-value=8e-05 Score=64.32 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 7899999999999999999987544
No 105
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.65 E-value=4.5e-05 Score=65.75 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999875543
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.64 E-value=3.2e-05 Score=66.13 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|.|++|+|||||++.++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 78999999999999999999853
No 107
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.62 E-value=0.00025 Score=61.19 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-
T Consensus 36 l~~vsl~i~~G----e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 36 LRGLSLDVHPG----EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEECTT----CEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCC
Confidence 33333334444 78999999999999999999985
No 108
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.59 E-value=3.1e-05 Score=67.14 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-+.+
T Consensus 24 L~~isl~i~~G----e~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 24 LKGINMNIKRG----EVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEEEEEETT----SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 33343334445 78999999999999999999875543
No 109
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=5.1e-05 Score=65.70 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999875543
No 110
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.57 E-value=0.00011 Score=64.20 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~ 91 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPS 91 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 789999999999999999998865543
No 111
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.57 E-value=0.00011 Score=65.81 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-..+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 78999999999999999999975443
No 112
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.55 E-value=6.1e-05 Score=68.04 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 7899999999999999999997543
No 113
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.54 E-value=5.3e-05 Score=68.10 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 7899999999999999999997544
No 114
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=0.00014 Score=59.92 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=39.3
Q ss_pred cCcccch----hhHHHHHHHHhcCCCC--eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 85 KELVGLD----SRLEKLRFLINKGPTD--VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 85 ~~~vGR~----~~~~~l~~~l~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..|++.. ..++.+..++...... .+.+.|+|++|+|||+||+.+++........++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4566543 3455556666543222 26789999999999999999999876654445554
No 115
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.51 E-value=7.7e-05 Score=72.04 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=67.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccce------EEEeechhhhcccCHHHH--------------HHHHHHHHhCC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS------CFLANVREISKKSGLVFL--------------QKQLISQLLNL 168 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 168 (373)
.+++|.|++|+|||||++.++..+.+..+.+ .++............... ...++..+ +.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-GI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-TC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-CC
Confidence 6899999999999999999998665432222 121110000001111111 11222222 22
Q ss_pred CCCCC-----cch-hhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCC
Q 017364 169 PDSGV-----WNV-YDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV 236 (373)
Q Consensus 169 ~~~~~-----~~~-~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~ 236 (373)
..... -+. ....-.+.+.+...+-+|+||+.- ....+..++..+.. ..|..||++|++...+... +
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-a 539 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-S 539 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-C
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-C
Confidence 11111 111 222334666677788899999642 22333333322210 1255699999998876654 4
Q ss_pred CceEeC
Q 017364 237 DEVYMH 242 (373)
Q Consensus 237 ~~~~~l 242 (373)
+.++.+
T Consensus 540 drv~vl 545 (607)
T 3bk7_A 540 DRLIVF 545 (607)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 555554
No 116
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.49 E-value=7.7e-05 Score=66.91 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 78999999999999999999985443
No 117
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.49 E-value=0.00022 Score=60.98 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|.|++|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999985
No 118
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.00016 Score=65.14 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 7899999999999999999997544
No 119
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.48 E-value=7.5e-05 Score=66.88 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-..+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCC
Confidence 78999999999999999999975543
No 120
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.48 E-value=0.00022 Score=63.60 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=66.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG 172 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
.++.+...+..+ ..++|+|++|+|||||++.++..+.+. ...+.+........... .+.. .+..
T Consensus 160 ~l~~l~~~i~~g----~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~~-----~~~i-~~~~----- 223 (330)
T 2pt7_A 160 AISAIKDGIAIG----KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHH-----KNYT-QLFF----- 223 (330)
T ss_dssp HHHHHHHHHHHT----CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSSC-----SSEE-EEEC-----
T ss_pred HHhhhhhhccCC----CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccccc-----hhEE-EEEe-----
Confidence 355566666666 679999999999999999999876554 34444432211100000 0000 0000
Q ss_pred CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
.........+...+...+-+|++|++.+.+.++.+. ... ..+..+|+|+|....
T Consensus 224 -ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 224 -GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGSS 277 (330)
T ss_dssp -BTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSSH
T ss_pred -CCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccHH
Confidence 011223445667777888899999987654444332 221 112237888887643
No 121
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00013 Score=70.35 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++..+.+
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 78999999999999999999875543
No 122
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.44 E-value=0.00011 Score=66.53 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 78999999999999999999985543
No 123
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.43 E-value=0.00015 Score=63.65 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
+++.|+|++|+|||+||..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 67889999999999999999886
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.43 E-value=0.00032 Score=63.69 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=62.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL 187 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 187 (373)
.+++|+|++|+|||||++.++..+.+. -..+.+......... ... . .+....... .+.......+...+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~-------~-~~v~Q~~~g-~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHK-------K-SIVNQREVG-EDTKSFADALRAAL 206 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCS-------S-SEEEEEEBT-TTBSCSHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccC-------c-eEEEeeecC-CCHHHHHHHHHHHh
Confidence 789999999999999999999987654 233333321100000 000 0 000000000 01122345677777
Q ss_pred CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364 188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230 (373)
Q Consensus 188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~ 230 (373)
...+-+|++|++.+.+.+..++... ..|..++.|++....
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 7788899999997666554443322 236668888887653
No 125
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.39 E-value=3.5e-05 Score=67.81 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|+|++|+|||||++.++.-+.+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCC
Confidence 78999999999999999999875443
No 126
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.39 E-value=0.00034 Score=62.82 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 7899999999999999999997544
No 127
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=0.00031 Score=57.86 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 90 LDSRLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 90 R~~~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
|++.++.+...+... .....+++|.|++|+|||||++.+...+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 455666666666532 2345899999999999999999999877543
No 128
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.38 E-value=0.00016 Score=69.01 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=66.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccce------EEEeechhhhcccCHHHHHHHH----------HHHHhCCCCC-
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS------CFLANVREISKKSGLVFLQKQL----------ISQLLNLPDS- 171 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~- 171 (373)
.+++|.|++|+|||||++.++....+..+.+ .++..-................ ...++..-..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 6899999999999999999998665432222 1221100000111121111111 1111111100
Q ss_pred --------CCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364 172 --------GVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD 237 (373)
Q Consensus 172 --------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~ 237 (373)
..+.-....-.+.+.+...+-+|+||+.- ....+..++..+.. ..|..||++|++...+..+ ++
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-~d 470 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-SD 470 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence 00111122334566677788899999642 23333333322210 1255699999998876654 45
Q ss_pred ceEeC
Q 017364 238 EVYMH 242 (373)
Q Consensus 238 ~~~~l 242 (373)
.++.+
T Consensus 471 rv~vl 475 (538)
T 1yqt_A 471 RLMVF 475 (538)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55555
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.37 E-value=0.00044 Score=61.43 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=29.2
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
...+++|+|++|+||||+++.++..+.+....+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 458999999999999999999999877654444443
No 130
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.36 E-value=0.00023 Score=63.82 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=29.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.++.|.|++|+|||||+..++.........++|+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 89999999999999999999988765555566664
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=0.0002 Score=59.38 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.++.|...+........+++|.|++|+|||||++.+...+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344444444322234589999999999999999999998764
No 132
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.36 E-value=0.00026 Score=67.43 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++..+.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 89999999999999999999875544
No 133
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.35 E-value=0.00012 Score=65.40 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46999999999988888766 458999999999999999999876543
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.35 E-value=0.00016 Score=68.87 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|+|++|+|||||++.++..+.+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999976543
No 135
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.30 E-value=0.00025 Score=68.50 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.+.-.+.++ ..++|+|++|+|||||++.++.-+.+.
T Consensus 358 ~l~~i~l~i~~G----~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 358 ALSHVSFSIPQG----KTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred ccccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444444455 789999999999999999999765443
No 136
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.29 E-value=0.00028 Score=63.77 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 7899999999999999999997544
No 137
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00018 Score=56.81 Aligned_cols=24 Identities=42% Similarity=0.416 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+++|.|++|+|||||++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 899999999999999999999987
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.27 E-value=0.00048 Score=55.90 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=59.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHH--hCC--CCCC------Ccchhh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL--LNL--PDSG------VWNVYD 178 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~------~~~~~~ 178 (373)
..|.|++.+|.||||+|-..+-+...+...+.++.-.... ...+...+...+--.+ .+. .... ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4577888888999999999988866665555555322110 1111112222210000 000 0000 001122
Q ss_pred hHHHHHHhhC-CCceEEEecccc--------cHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364 179 GMNMIRSRLR-HKKVLLVIDDVI--------ELQQLESLAGKHDWFGIGSRIFITSRDKH 229 (373)
Q Consensus 179 ~~~~l~~~l~-~~~~LlvlDdv~--------~~~~l~~l~~~~~~~~~g~~iliTtR~~~ 229 (373)
.....++.+. ++--|||||++- +.+.+-.++...+ .+..||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp---~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP---GHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC---TTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc---CCCEEEEECCCCc
Confidence 2334455554 345699999873 2333434443332 3567999999874
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.0013 Score=54.88 Aligned_cols=109 Identities=17% Similarity=0.008 Sum_probs=57.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCC--CCCCcchhhhHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLP--DSGVWNVYDGMNMIRSR 186 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 186 (373)
.++.|+|+.|+||||++..++.+...+...+..+....... .. .++.+.+ +.. ........+....+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~------~~i~srl-G~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI------RNIQSRT-GTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC------SSCCCCC-CCSSCCEEESSTHHHHHHHHST
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH------HHHHHhc-CCCccccccCCHHHHHHHHHHH
Confidence 78999999999999999999988766544444442111000 00 0111111 111 00112223333444443
Q ss_pred hCC-CceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364 187 LRH-KKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK 228 (373)
Q Consensus 187 l~~-~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~ 228 (373)
+.+ +.-+|++|.+.. .+.++.+..... .|..||+|.++.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 333 345999998743 233332221111 167799999854
No 140
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.22 E-value=0.0033 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..+++|+|++|+||||++..++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999998774
No 141
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00058 Score=65.86 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=67.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccc------eEEEeechhhhcccCH--------------HHHHHHHHHHHhCC
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEA------SCFLANVREISKKSGL--------------VFLQKQLISQLLNL 168 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 168 (373)
.+++|.|++|+|||||++.++....+..+. +.++............ ......++..+.-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 468999999999999999999865543221 1111100000000000 11122222222111
Q ss_pred -----CCCCCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364 169 -----PDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD 237 (373)
Q Consensus 169 -----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~ 237 (373)
.....+.-....-.+.+.+..++-+|+||+.- ....+..++..+.. ..|..||++||+...+..+ ++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~~-aD 536 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATYL-AD 536 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence 11111122222345666777888899999642 22223233222110 1256699999998877655 55
Q ss_pred ceEeCC
Q 017364 238 EVYMHE 243 (373)
Q Consensus 238 ~~~~l~ 243 (373)
.++.+.
T Consensus 537 rvivl~ 542 (608)
T 3j16_B 537 KVIVFE 542 (608)
T ss_dssp EEEECE
T ss_pred EEEEEe
Confidence 565554
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.20 E-value=0.00026 Score=68.38 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++..+.+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCC
Confidence 78999999999999999999875543
No 143
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.20 E-value=0.00052 Score=62.39 Aligned_cols=35 Identities=37% Similarity=0.660 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-.
T Consensus 37 L~~vsl~i~~G----e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 37 LENISFSISPG----QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEEECTT----CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeceeEEEcCC----CEEEEECCCCChHHHHHHHHhCCC
Confidence 44444334445 789999999999999999998743
No 144
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.18 E-value=0.00052 Score=65.43 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.+++|.|++|+|||||++.++.........++++
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7899999999999999999998776543333444
No 145
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.17 E-value=0.00081 Score=66.65 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=77.0
Q ss_pred cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
....|.++..+.+...+.- +...++-+.++||+|+|||.||+.+++..... ++.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~~------- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGP------- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCHH-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEeccc-------
Confidence 3456777777776665431 11224568899999999999999999865432 2221111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCCC--
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDWF-- 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~-- 215 (373)
.++....+. +.......+...-...+++|+||+++..- .+..|+..+.-.
T Consensus 546 ------~l~s~~vGe------se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 546 ------ELLTMWFGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ------HHHTTTCSS------CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ------hhhccccch------HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 111111111 11222223333335678999999986421 123333222111
Q ss_pred CCCcEEEEEeCChhh-----HhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364 216 GIGSRIFITSRDKHL-----LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP 283 (373)
Q Consensus 216 ~~g~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 283 (373)
..+.-||.||..... ....+.+..+.++..+.++-.++|+.+....... ... ....+++.+.|+-
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~--dl~~la~~t~g~S 683 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV--DLEFLAKMTNGFS 683 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCC--CHHHHHHhCCCCC
Confidence 123333334443322 1111345678888888888888886665322111 111 1455666666653
No 146
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.0003 Score=66.91 Aligned_cols=27 Identities=48% Similarity=0.785 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++....+.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 589999999999999999999866544
No 147
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.17 E-value=0.015 Score=51.93 Aligned_cols=155 Identities=9% Similarity=-0.030 Sum_probs=92.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH-
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS- 185 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 185 (373)
.++..++|+.|.||++.+..+...+.. .|.....+. . ........+.. .+..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~----------------------~~~~~ 71 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFS----------------------LCQAM 71 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHH----------------------HHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHH----------------------HhcCc
Confidence 478999999999999999999987643 232211111 1 11122222221 1111
Q ss_pred hhCCCceEEEeccccc---HHHHHHHhcCCCCCCCCcEEEEEeCC-------hhhHhhc-CCCceEeCCCCCHhHHHHHH
Q 017364 186 RLRHKKVLLVIDDVIE---LQQLESLAGKHDWFGIGSRIFITSRD-------KHLLMAH-GVDEVYMHEHLNYDEALGLF 254 (373)
Q Consensus 186 ~l~~~~~LlvlDdv~~---~~~l~~l~~~~~~~~~g~~iliTtR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~l~ 254 (373)
-+.+.+-++|+|+++. ....+.+...+....+++.+|+++.+ ..+...+ .....++..+++.++...++
T Consensus 72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 1234566888998754 23344444333322346767766643 1233332 23467899999999999888
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364 255 CLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290 (373)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 290 (373)
...+-.... ....+.+..+++.++|.+..+....
T Consensus 152 ~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 152 AARAKQLNL--ELDDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHHH
Confidence 777632221 1335668889999999988776543
No 148
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.16 E-value=0.0025 Score=56.34 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.++.|.|++|+|||||+..++.........++|+
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999999999998765443455555
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.15 E-value=0.00021 Score=58.07 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=25.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEA 138 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 138 (373)
++++|.|++|+|||||++.+...+...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 578999999999999999999887644433
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.14 E-value=0.0021 Score=55.81 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||+..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999986653
No 151
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.14 E-value=0.00015 Score=72.63 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=80.7
Q ss_pred cCcccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364 85 KELVGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG 153 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 153 (373)
...+|.+...+.+...+... -.....+.++|++|+|||+||+.+++.....|-. + +...+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v-~~~~l~~~-- 550 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---I-KGPELLTM-- 550 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---C-CCSSSTTC--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---E-echHhhhh--
Confidence 45678887777777766421 1123568899999999999999999987543211 1 11110000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCCC--
Q 017364 154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDWF-- 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~~-- 215 (373)
..+ .........+...-...+.++++|+++.. ..+..++..+...
T Consensus 551 -----------~~g------~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~ 613 (806)
T 1ypw_A 551 -----------WFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -----------CTT------TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred -----------hcC------ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc
Confidence 000 00011111122222334678999998642 1244555544311
Q ss_pred CCCcEEEEEeCChhhHhhc-----CCCceEeCCCCCHhHHHHHHHHhh
Q 017364 216 GIGSRIFITSRDKHLLMAH-----GVDEVYMHEHLNYDEALGLFCLKA 258 (373)
Q Consensus 216 ~~g~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~ 258 (373)
..+..||.||......... .....+.++..+.++-.++++.+.
T Consensus 614 ~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 1234455565543322111 233467788889999888887665
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.10 E-value=0.00031 Score=59.90 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
|....++.+...+..+ .+++|.|++|+|||||++.++..+
T Consensus 10 ~~~~~l~~isl~i~~g----~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP----FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCS----EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC----EEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455665545444 799999999999999999998865
No 153
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.00075 Score=57.15 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+++|.|++|+|||||+..++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999863
No 154
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.07 E-value=0.00048 Score=62.42 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHHHh-------------cCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 86 ELVGLDSRLEKLRFLIN-------------KGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++|.+..++.+...+. ........+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47888888888877772 1111235689999999999999999998763
No 155
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.06 E-value=0.00031 Score=66.09 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=39.1
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+.++|++..++.+...+..+ ..|.|+|++|+|||+||+.++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46999999999988888776 5689999999999999999988653
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.05 E-value=0.007 Score=56.29 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=35.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLL 166 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (373)
..++.|.|++|+|||||+..++...... ...++|+. .......+...++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHc
Confidence 3789999999999999999999876543 33445543 22334445555544433
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.05 E-value=0.00064 Score=61.06 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=29.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.++.|+|++|+||||||..++.........++|+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78999999999999999999987765555566664
No 158
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.05 E-value=0.00079 Score=58.77 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=26.5
Q ss_pred CCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 104 GPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 104 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
....+.+|+|.|++|+|||||++.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445689999999999999999999987764
No 159
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.02 E-value=0.0025 Score=57.08 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+..+|..+-....++.|+|++|+||||||..++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334443222234899999999999999999999874
No 160
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00032 Score=56.40 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|.|+|++|+||||+++.+...+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6799999999999999999998764
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00041 Score=56.99 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..|+|+|++|+||||+++.++..+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999998763
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00037 Score=56.27 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=22.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999998754
No 163
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.98 E-value=0.0028 Score=56.11 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
...+++|+|++|+||||++..++..+......+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357999999999999999999999887654444444
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.0012 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++..+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999876
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.95 E-value=0.0012 Score=57.71 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=27.3
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEe
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHE--FEASCFLA 143 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 143 (373)
++.|.|++|+|||||+.+++...... ...++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876654 34556654
No 166
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.95 E-value=0.0014 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=28.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
...+++|+|++|+||||++..++..+......+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 357999999999999999999999887654444443
No 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.95 E-value=0.00035 Score=58.41 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.+...+..+ .+++|+|++|+|||||++.++...
T Consensus 13 l~~isl~i~~G----~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNI----YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CC----CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCC----CEEEEECCCCCCHHHHHHHHHhhC
Confidence 44454445555 789999999999999999999866
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.94 E-value=0.0034 Score=57.71 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=28.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+.+++++|++|+||||++..++..+......+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999998876654444433
No 169
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00082 Score=54.47 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=27.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+++|.|++|+||||+++.++..+......+.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 47899999999999999999999876543333333
No 170
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.92 E-value=0.00033 Score=56.77 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=23.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
+.|+|+||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999988654433
No 171
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.91 E-value=0.00087 Score=58.91 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
...+++|+|++|+|||||++.++..+.+....+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999987765433333
No 172
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00051 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|.|++|+||||+++.+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988754
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.90 E-value=0.0013 Score=57.91 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHh-ccccceEEE
Q 017364 92 SRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLIS-HEFEASCFL 142 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 142 (373)
..++.+..++...... ...+.|+|++|+|||+||..+++... .....+.++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3455555666542221 36789999999999999999999876 544344444
No 174
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.89 E-value=0.0013 Score=66.32 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.7
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+++|+|++|+|||||++.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999984
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.89 E-value=0.0044 Score=55.06 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=27.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.++.|.|.+|+|||||+..++.........+.|+
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999999999998765543444554
No 176
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.88 E-value=0.012 Score=51.44 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=28.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+++++|++|+||||++..++..+......+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999998877654444444
No 177
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.87 E-value=0.00057 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|.|++|+|||||++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 78999999999999999999875
No 178
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.87 E-value=0.0054 Score=57.23 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~ 142 (373)
.++.|.|++|+|||||+..++..+....+ .+.|+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 78999999999999999999988765323 45554
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00046 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988754
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.85 E-value=0.00049 Score=57.02 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..+++|+||+|+|||||++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 378999999999999999999987643
No 181
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.85 E-value=0.00064 Score=65.65 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|+|++|+|||||++.+...+.+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccC
Confidence 78999999999999999998875443
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.85 E-value=0.0012 Score=58.37 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 87 LVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++|....+..+...+... ...+.+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 556566666666555443 33467999999999999999999988765
No 183
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.001 Score=56.47 Aligned_cols=40 Identities=18% Similarity=-0.024 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+..+...+......+..|+|.|++|+||||+++.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444443333222345789999999999999999998765
No 184
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.83 E-value=0.0011 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++.. .+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 78999999999999999999987 544
No 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.0011 Score=53.77 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=23.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..|+|.|++|+||||+++.+...+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999987643
No 186
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.83 E-value=0.00061 Score=66.00 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|+|++|+|||||++.++..+.+.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 789999999999999999998765443
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.83 E-value=0.0011 Score=58.30 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=27.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASC 140 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 140 (373)
..+++|+|++|+||||+++.++..+.+....+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999999999998775533333
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.82 E-value=0.00081 Score=55.68 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..+++|.|++|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 378999999999999999999987653
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.82 E-value=0.00061 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+++|.|++|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998864
No 190
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.81 E-value=0.00072 Score=60.73 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=34.3
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|.+...+.+...+..... .-+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~--~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGI--GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGG--CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCCC--ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4689998866655444332211 3389999999999999999998764
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.80 E-value=0.0007 Score=55.63 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+++|.|++|+|||||++.++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 789999999999999999998876
No 192
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.79 E-value=0.001 Score=64.58 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=42.1
Q ss_pred cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.-..++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+...
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3356899999999999999887 579999999999999999999976544
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.79 E-value=0.001 Score=58.36 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=34.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEE
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFL 142 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~ 142 (373)
.++.+..-+..+ .+++|.|++|+|||||++.++..+....+ .+.|+
T Consensus 24 ~Ld~i~~~l~~G----~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 24 GINDKTLGARGG----EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp THHHHHCSBCTT----CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHhcCCCCC----eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 356665445555 78999999999999999999998765533 44444
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.79 E-value=0.0011 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+++|+|++|+||||+++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3789999999999999999998765
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.78 E-value=0.00071 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.+...+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 7899999999999999999998763
No 196
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.78 E-value=0.00074 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+.|+|+|++|+||||+++.++..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999998763
No 197
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00078 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.77 E-value=0.0013 Score=59.13 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=29.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.++.|.|++|+||||||..++.........++|+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999999999987665545566664
No 199
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.76 E-value=0.0015 Score=58.89 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.++.|.|++|+||||||..++.........++|+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 78999999999999999999987655545666664
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.76 E-value=0.0021 Score=57.14 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++.|+|++|+||||||..++....
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHh
Confidence 7899999999999999999998753
No 201
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.76 E-value=0.02 Score=51.77 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=34.3
Q ss_pred cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|....+..+...+..-......|.|+|++|+||+++|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 4588887777766665542111124478999999999999998876543
No 202
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.75 E-value=0.00053 Score=58.09 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999986543
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.73 E-value=0.00068 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+.++|+|++|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6799999999999999999998664
No 204
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.72 E-value=0.00066 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+|+|.|++|+||||+++.+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 205
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.72 E-value=0.00089 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 206
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.0015 Score=51.89 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=25.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++++|.|+.|+|||||+..++..+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4789999999999999999999987655
No 207
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.68 E-value=0.0025 Score=59.39 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=27.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
..+++|+|++|+|||||++.++..+......+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 5799999999999999999999987755444443
No 208
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.68 E-value=0.0012 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3789999999999999999998866
No 209
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.67 E-value=0.00089 Score=54.66 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=23.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++++|+||+|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 37899999999999999999998654
No 210
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00078 Score=53.75 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.7
Q ss_pred EEEEEeccCCcchhHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVV 128 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~ 128 (373)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 211
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0016 Score=58.47 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=27.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASC 140 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 140 (373)
..+++|+|++|+||||+++.++..+.+....+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 579999999999999999999998765533333
No 212
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.66 E-value=0.0011 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 213
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.65 E-value=0.0004 Score=57.70 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++..+.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 67999999999999999999876543
No 214
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0011 Score=56.37 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 91 DSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 91 ~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...++.+...+.. + ..|+|+|++|+||||+++.++..+.
T Consensus 32 ~~~l~~~~~~i~~~l~g----~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNG----RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTT----CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCC----CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457777666665 5 6799999999999999999998764
No 215
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.64 E-value=0.00068 Score=57.62 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++.-+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 8899999999999999999987544
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.63 E-value=0.0011 Score=56.51 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+.+++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999999765
No 217
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.62 E-value=0.0014 Score=57.44 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.+...+.++ .+++|+|++|+|||||++.+...+
T Consensus 115 vL~~vsl~i~~G----e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKK----NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTC----SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCC----CEEEEECCCCCcHHHHHHHHhhhc
Confidence 455555445555 789999999999999999999876
No 218
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.62 E-value=0.00062 Score=58.40 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++.-+.+
T Consensus 23 l~~vsl~i~~G----e~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 23 LDGVSISVNKG----DVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEECCEEETT----CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33344334445 78999999999999999999875543
No 219
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.61 E-value=0.0014 Score=57.81 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=25.1
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...+++|.|++|+|||||++.+...+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3589999999999999999999988765
No 220
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.61 E-value=0.0032 Score=55.49 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=24.3
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...+++|.|++|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 348999999999999999999998776
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.01 Score=54.69 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
+.+|.++|++|+||||++..++..+......+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6899999999999999999999887665433333
No 222
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.60 E-value=0.0006 Score=65.79 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|+|++|+|||||++.+...+.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 78999999999999999998875443
No 223
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0013 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..|+|.|++|+||||+++.+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.59 E-value=0.0012 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+||||+++.+.....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988663
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.59 E-value=0.0011 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 7899999999999999999998765
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.57 E-value=0.00061 Score=58.04 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=22.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
.+++|.|++|+|||||++.++.-+.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999875443
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.56 E-value=0.0087 Score=55.52 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..++.|.|.+|+||||||..++.........+.|+
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 37899999999999999999998765443344554
No 228
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0015 Score=53.06 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+|+|.|++|+||||+++.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 229
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0015 Score=55.45 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=27.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.++.|.|++|+|||||+..++.........++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 78999999999999999998877654444555553
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.55 E-value=0.0014 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.0017 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=22.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..|+|.|++|+||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998765
No 232
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.54 E-value=0.003 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.1
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+.++.|.|++|+||||+++.+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.53 E-value=0.0012 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998775
No 234
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.53 E-value=0.0097 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++.|+|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999776544
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.53 E-value=0.0011 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+.|+|+|++|+||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998765
No 236
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.53 E-value=0.0014 Score=52.49 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred EEEEeccCCcchhHHHHHHHHHHh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.|+|.|++|+||||+++.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 237
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.53 E-value=0.0015 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.++|+|.|++|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988754
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.53 E-value=0.00077 Score=58.48 Aligned_cols=37 Identities=32% Similarity=0.491 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+.-.+.++ .+++|.|++|+|||||++.++..+.+
T Consensus 37 L~~isl~i~~G----e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 37 LKKISWQIAKG----DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEEEEEEETT----CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEeeeEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44444444455 78999999999999999999976543
No 239
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.52 E-value=0.0021 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+|+|.|++|+||||+++.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998865
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0011 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||++.+.....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 7899999999999999999988763
No 241
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.51 E-value=0.0028 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+.++.|.|++|+||||+++.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999988654
No 242
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.51 E-value=0.0019 Score=53.68 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 106 TDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+++|.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998865
No 243
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.0028 Score=51.73 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
-+..+..++..- .....+.|+||+|+||||+|..+++.+.
T Consensus 44 f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355666666532 2224689999999999999999998774
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.50 E-value=0.0016 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
+.++|+|++|+|||||++.++..+...
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 789999999999999999998876543
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.49 E-value=0.0085 Score=52.38 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=28.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+++|+|++|+||||++..++..+......+.++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 47899999999999999999999877654444443
No 246
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.49 E-value=0.0045 Score=57.22 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=25.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASC 140 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 140 (373)
+.++|+|++|+|||||+..++......+..++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 56899999999999999999987665444333
No 247
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.48 E-value=0.011 Score=55.81 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=28.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 142 (373)
..++.|.|++|+|||||+..++...... ...+.|+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 3789999999999999999999887654 3345555
No 248
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.48 E-value=0.0025 Score=56.97 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=27.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+++|.|++|+|||||++.+...+.+....+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 38999999999999999999998776544444433
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.0024 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..|+|.|++|+||||+++.+...+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999987643
No 250
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.48 E-value=0.0025 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+|+|.|+.|+||||+++.+...+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887644
No 251
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.48 E-value=0.0014 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+|+|+|++|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 252
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.47 E-value=0.0018 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+|+|.|++|+||||+++.++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998764
No 253
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.002 Score=57.41 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhc--CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 91 DSRLEKLRFLINK--GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 91 ~~~~~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
+...+.+...+.. ..+....++|+|++|+||||+++.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444444444431 122346799999999999999999998765443
No 254
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.0016 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|.|++|+||||+++.++..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 255
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.46 E-value=0.0017 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.7
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+.+|+|.|++|+||||+++.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999988654
No 256
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.46 E-value=0.0017 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred EEEEeccCCcchhHHHHHHHHHHh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.|+|.|+.|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 257
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.46 E-value=0.0057 Score=55.05 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
...+...+.+...+..+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 444444444444456899999999999999999999876544
No 258
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0012 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++|+|+|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999988653
No 259
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.023 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+.+...+..+ +.++|.|++|+||||++..+.-
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHh
Confidence 34444445555 6799999999999987766554
No 260
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999886
No 261
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.43 E-value=0.0034 Score=50.40 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...++|+|++|+||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 378999999999999999999987654
No 262
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.42 E-value=0.0018 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988653
No 263
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0013 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=18.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|.|.|++|+||||+++.+...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999987654
No 264
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.41 E-value=0.0021 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..+|+|.|++|+||||+++.+...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988653
No 265
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.41 E-value=0.0026 Score=62.50 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=33.9
Q ss_pred HHHHhhCCCce--EEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364 182 MIRSRLRHKKV--LLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH 242 (373)
Q Consensus 182 ~l~~~l~~~~~--LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l 242 (373)
.+.+.+-.++- +|+||+. .+...+..++..+. ..|..||++||+..++.. ++.++.+
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 34455544444 9999964 33344444443332 126679999999887653 5666655
No 266
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.39 E-value=0.0019 Score=55.81 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
-.++|+|++|+|||||++.++.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35899999999999999999986543
No 267
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.39 E-value=0.091 Score=47.72 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=33.3
Q ss_pred CcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 86 ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 86 ~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++|....++.+...+..-......|.|.|.+|+|||++|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 57777777777776665321122346899999999999998887653
No 268
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.38 E-value=0.0014 Score=52.32 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
++++|+|++|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999987754
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0016 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..|+|.|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 270
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.37 E-value=0.0022 Score=52.52 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...+|+|.|+.|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3578999999999999999999874
No 271
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.37 E-value=0.0024 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...|+|.|++|+||||+++.+...+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988663
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.34 E-value=0.0023 Score=57.80 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+.+...+..+ ..++|+|++|+|||||++.++..+... ...+.+.
T Consensus 166 ~~l~~~i~~G----~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLE----RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp HHHHHHHHTT----CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred HHHHHHHhcC----CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 5555556666 679999999999999999999876543 3344443
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.34 E-value=0.0018 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhc
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988764
No 274
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.34 E-value=0.0077 Score=50.18 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..+.+...+... ....|+|+|.+|+|||||+..++......
T Consensus 25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344555554433 34889999999999999999999875433
No 275
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.33 E-value=0.003 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=23.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
...|.|.|++|+||||+++.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999998765
No 276
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0021 Score=52.99 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 277
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0021 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|.|++|+||||+++.++..+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999997653
No 278
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.31 E-value=0.002 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+|+|+|++|+||||+++.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999988743
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.0055 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++.|+|++|+|||+||..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998763
No 280
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.31 E-value=0.0028 Score=58.38 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=36.6
Q ss_pred cCcccchhhHHHHHHHHhcC------------CCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 85 KELVGLDSRLEKLRFLINKG------------PTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 85 ~~~vGR~~~~~~l~~~l~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..++|.+...+.+...+... ....+-+.++|++|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45788887777776555210 0123568999999999999999999876543
No 281
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.31 E-value=0.0025 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred EEEEeccCCcchhHHHHHHHHHHh
Q 017364 110 MIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.30 E-value=0.0024 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.0025 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..+|+|.|+.|+||||+++.+...+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999987654
No 284
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.26 E-value=0.0026 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=22.4
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhc
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
+|+|.|+.|+||||+++.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987753
No 285
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.25 E-value=0.0032 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.|+|.|+.|+||||+++.+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999887543
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.25 E-value=0.0014 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=16.2
Q ss_pred EEEEEeccCCcchhHHHHHHH-HHH
Q 017364 109 RMIGICGMGGIGKTTLARVVY-DLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~-~~~ 132 (373)
.+++|+|++|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 764
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.006 Score=50.66 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
+..+.+...+... ..+.++|+|.+|+|||||+..++......
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444555544432 34899999999999999999999876544
No 288
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.24 E-value=0.0044 Score=54.68 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.0
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+.++|+|+|-||+||||.+..++..+......+..+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 459999999999999999999998877654444444
No 289
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.24 E-value=0.0071 Score=55.54 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=28.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.+++|+|++|+|||||++.++..+......+++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 7899999999999999999999876654444444
No 290
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0041 Score=49.74 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++++|.|++|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 4789999999999999999999876543
No 291
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.19 E-value=0.0026 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0025 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..|+|.|++|+||||+++.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 293
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.16 E-value=0.0026 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..|+|.|++|+||||+++.++..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 679999999999999999998764
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.15 E-value=0.0019 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||++.++.-+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 7899999999999999999987543
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.14 E-value=0.0059 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=23.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++.|+|++|+|||||+..++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3899999999999999999999876
No 296
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0054 Score=55.46 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
....++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34789999999999999999999754
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.10 E-value=0.032 Score=51.21 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
...+++|+|++|+||||++..++..+......+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 35789999999999999999999988765433433
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.10 E-value=0.024 Score=52.29 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|+++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999887765
No 299
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.10 E-value=0.054 Score=50.87 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.3
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+.+|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 36799999999999999999999877654
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.09 E-value=0.004 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=23.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+||||+++.+...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7899999999999999999998776
No 301
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.06 E-value=0.0037 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+|+|+|+.|+||||+++.+...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998753
No 302
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.04 E-value=0.0033 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..|+|.|++|+||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998876
No 303
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.02 E-value=0.0077 Score=57.33 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=25.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
.+++|+|++|+|||||++.++..+....
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 7899999999999999999999887543
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.01 E-value=0.011 Score=52.87 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCeEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364 106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASC 140 (373)
Q Consensus 106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 140 (373)
.+..+++|.|++|+|||||+..++..+......+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34589999999999999999999987765433333
No 305
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.00 E-value=0.0041 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+||||+++.++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988763
No 306
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.00 E-value=0.045 Score=52.51 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASC 140 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 140 (373)
+++.|.|++|+||||++..+...+......+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 68899999999999999999987765443333
No 307
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.00 E-value=0.0028 Score=55.29 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=20.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..+|+|.|+.|+||||+++.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 308
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.99 E-value=0.0021 Score=58.82 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|.|++|+|||||++.++..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999999984
No 309
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.99 E-value=0.0043 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998864
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.98 E-value=0.0038 Score=50.67 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.-.++|.|++|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3678999999999999999998753
No 311
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.97 E-value=0.0036 Score=55.45 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998754
No 312
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.95 E-value=0.0087 Score=64.77 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=29.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
+.+.|+||+|+|||+||..++.........+.|+.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 78999999999999999999988766655666664
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.94 E-value=0.0039 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=22.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..|+|.|+.|+||||+++.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998865
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.94 E-value=0.0043 Score=55.01 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 315
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.93 E-value=0.011 Score=59.87 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=20.1
Q ss_pred eEEEEEeccCCcchhHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVY 129 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~ 129 (373)
..+++|+||+|.||||+++.++
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999999984
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.93 E-value=0.0045 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 317
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0046 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++|+|.|+.|+||||+++.++..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999988654
No 318
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.93 E-value=0.0044 Score=55.50 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.+++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 789999999999999999999987654
No 319
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.92 E-value=0.0051 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 320
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.92 E-value=0.0096 Score=60.94 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..+++|+|++|.|||||++.+ .-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 379999999999999999998 53
No 321
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.92 E-value=0.0047 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998866
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.88 E-value=0.0045 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|+|++|+|||||+..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 323
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.88 E-value=0.0047 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.++++|.||+|+|||||+..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4789999999999999999999864
No 324
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.86 E-value=0.0052 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=21.5
Q ss_pred CeEEEEEeccCCcchhHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.+.+|+|+|++|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 325
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.85 E-value=0.0047 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|++|+|||||++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 326
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.84 E-value=0.0045 Score=54.06 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++++|.||+|+|||||+..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999998754
No 327
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.83 E-value=0.0076 Score=63.54 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|+|++|+|||||++.+...+.+
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999998875543
No 328
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.82 E-value=0.004 Score=57.02 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCeEE--EEEeccCCcchhHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRM--IGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~--v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+...+..| .+ ++|+|++|+|||||++.++..
T Consensus 30 L~~vsl~i~~G----ei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQG----FCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-C----CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCC----CeeEEEEECCCCCCHHHHHHHHhCc
Confidence 67776666555 55 999999999999999999863
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.82 E-value=0.0047 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=21.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+.+|+|++|+|||||+..++.-+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4789999999999999999887654
No 330
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.81 E-value=0.0085 Score=48.38 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=22.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 678899999999999998887776443
No 331
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.79 E-value=0.011 Score=49.68 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...|+|.|++|+||||+++.+.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 378999999999999999999998875
No 332
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.77 E-value=0.0052 Score=64.94 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|+|+.|+|||||++.+...+.+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cEEEEEecCCCcHHHHHHHhcccccc
Confidence 78999999999999999998875543
No 333
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.76 E-value=0.0097 Score=49.38 Aligned_cols=33 Identities=12% Similarity=-0.085 Sum_probs=25.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCF 141 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 141 (373)
-.|.+.|.||+||||++..++..+......+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 458899999999999999999887655433333
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.76 E-value=0.0062 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..|+|.|++|+||||+++.++..+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 335
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.71 E-value=0.0062 Score=57.52 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+..+ ..++|.|++|+||||+++.+...+.+
T Consensus 250 l~~l~~~v~~g----~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 250 LAYLWLAIEHK----FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHTT----CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHhCC----CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 45555555555 55999999999999999999887654
No 336
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.70 E-value=0.0047 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+.|+|.|++|+||||||..++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998753
No 337
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.69 E-value=0.0057 Score=64.69 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..|+|+|++|+|||||++.+..-+.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCcc
Confidence 6799999999999999999886443
No 338
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.69 E-value=0.011 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..+|+|+|++|+|||||...+.......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 5899999999999999999999876554
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.69 E-value=0.0061 Score=55.10 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
...++|+|++|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3789999999999999999999876654
No 340
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.67 E-value=0.012 Score=50.23 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
...+..++.........+.|+||+|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344556665432334579999999999999999998854
No 341
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.66 E-value=0.0098 Score=55.90 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=33.9
Q ss_pred cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...|.+..+.+.....+......+|.+.|++|+||||+++.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444555555555544322223478999999999999999999998874
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0054 Score=57.07 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.+++-....
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccccc
Confidence 789999999999999999999865443
No 343
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.64 E-value=0.0044 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=22.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++|+|.||.|+|||||+..++.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999998864
No 344
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.61 E-value=0.042 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
+.++|.|.+|+|||+|+..++..+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~ 179 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK 179 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh
Confidence 78999999999999999999988643
No 345
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.61 E-value=0.028 Score=46.15 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=27.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..+..++|+-|.||||.+...+.+.......++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 37889999999999999988888876554444444
No 346
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0078 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..+|+|.|++|+||||+++.++..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998865
No 347
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.60 E-value=0.0065 Score=56.62 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS 139 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 139 (373)
.+++|.|++|+|||||++.++.-..+.-+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 6899999999999999999998776554433
No 348
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.60 E-value=0.0073 Score=55.88 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.+++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 789999999999999999999976654
No 349
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.58 E-value=0.014 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++++.|.+|+||||++..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998776
No 350
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.57 E-value=0.008 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
+.|+|.|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 351
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.57 E-value=0.028 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.|+|-|.-|+||||.++.+++.+......+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999987765555544
No 352
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.57 E-value=0.0071 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 353
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.56 E-value=0.0076 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
..|+|.|.+|+|||||++.+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999976
No 354
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.54 E-value=0.025 Score=46.72 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=25.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
..|+|.|+.|+||||+++.+.+.+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999887553
No 355
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.016 Score=48.97 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=25.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH-hccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI-SHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~ 142 (373)
.++.|.|++|+|||+||.+++... ......++++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 789999999999999999987653 3333344444
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.53 E-value=0.008 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+.+|+|++|+|||||+..++.-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999987644
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.49 E-value=0.0079 Score=55.48 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
+.+|+|+|++|+||||++..++..+......+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999999999998876543333333
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.41 E-value=0.0098 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
++|+|.||+|+|||||+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 359
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.34 E-value=0.0066 Score=48.82 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEeccCCcchhHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.|+|+|.+|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999886
No 360
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.34 E-value=0.0058 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.122 Sum_probs=21.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..+++|.|+.|+|||||++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999998764
No 361
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.33 E-value=0.018 Score=50.58 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.4
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
..++|+|+|-||+||||++..++..+......+..+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 358888999999999999999999877654444444
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.30 E-value=0.01 Score=56.44 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=32.4
Q ss_pred hhHHHHHH-HHhcCCCCeEEEEEeccCCcchhHHHHHH--HHHHhccccceEEEe
Q 017364 92 SRLEKLRF-LINKGPTDVRMIGICGMGGIGKTTLARVV--YDLISHEFEASCFLA 143 (373)
Q Consensus 92 ~~~~~l~~-~l~~~~~~~~~v~I~G~~GiGKTtLa~~~--~~~~~~~f~~~~~~~ 143 (373)
..++.+.. -+..+ .+++|.|++|+|||||++.+ ..-... ....+++.
T Consensus 26 ~~Ld~i~~G~i~~G----e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~ 75 (525)
T 1tf7_A 26 EGFDDISHGGLPIG----RSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT 75 (525)
T ss_dssp TTHHHHTTSSEETT----SEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred hhHHHhcCCCCCCC----eEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 45666665 55566 78999999999999999995 343432 23455553
No 363
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.29 E-value=0.027 Score=47.31 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=24.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999987654
No 364
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.29 E-value=0.0099 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||++.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999863
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.28 E-value=0.014 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.++.|+|++|+|||||+..++-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 78999999999999999988754
No 366
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.0071 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+.+|.|+|++|+||||+++.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999987644
No 367
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.22 E-value=0.013 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.012 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998864
No 369
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.012 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
+..|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 370
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.18 E-value=0.021 Score=48.96 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=26.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
++|+|.|.||+||||++..++..+......+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5778899999999999999999887654444444
No 371
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.16 E-value=0.019 Score=61.33 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHh-cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364 94 LEKLRFLIN-KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG 172 (373)
Q Consensus 94 ~~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
+..|...+. .+-....++.|.|++|+||||||..++.........+.|+. ......... ...+--......-..
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~Ees~~ql~-A~~lGvd~~~L~i~~ 791 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-ARKLGVDIDNLLCSQ 791 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-HHHTTCCGGGCEEEC
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----ccchHHHHH-HHHcCCChhheEEec
Q ss_pred CcchhhhHHHHHHhh-CCCceEEEeccc
Q 017364 173 VWNVYDGMNMIRSRL-RHKKVLLVIDDV 199 (373)
Q Consensus 173 ~~~~~~~~~~l~~~l-~~~~~LlvlDdv 199 (373)
..+..+....+++.. ..+.-++|+|.+
T Consensus 792 ~~~leei~~~l~~lv~~~~~~lVVIDsL 819 (1706)
T 3cmw_A 792 PDTGEQALEICDALARSGAVDVIVVDSV 819 (1706)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred CCcHHHHHHHHHHHHHccCCCEEEEech
No 372
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.14 E-value=0.13 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
+-|.++||+|+|||++|+.+....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC
Confidence 668999999999999998877643
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.14 E-value=0.029 Score=46.84 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..|+|.|+.|+||||+++.+++.+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 689999999999999999999987654
No 374
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.13 E-value=0.017 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.6
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
....|+|+|.+|+|||||+..+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4477999999999999999998754
No 375
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.12 E-value=0.15 Score=50.70 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..+.+...+..+ ..++|+|++|+||||++..++..
T Consensus 98 q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 345555666655 67999999999999977776544
No 376
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.10 E-value=0.028 Score=53.53 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
|.+..+.+.....+......+|.++|++|+||||+++.+...+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 333344444444221223478999999999999999999987654
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.07 E-value=0.013 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|++.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 378
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.05 E-value=0.04 Score=45.77 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.6
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...|+|.|+.|+||||+++.+.+.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999998765
No 379
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.03 E-value=0.016 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.-.|+|.|.+|+|||||+..+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35689999999999999999875
No 380
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.01 E-value=0.024 Score=49.22 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=26.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
++|+|.|.||+||||++..++..+......+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 6788899999999999999998876553334333
No 381
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.00 E-value=0.019 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|.|.+|+|||||+..+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 382
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.99 E-value=0.04 Score=45.47 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
..|+|.|+.|+||||+++.+.+.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6799999999999999999999886553
No 383
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.99 E-value=0.013 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|+|.+|+|||||++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 384
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.97 E-value=0.016 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
..++|.|++|+||||+++.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 385
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.95 E-value=0.015 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-|.|.|++|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56899999999999999999874
No 386
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.92 E-value=0.021 Score=45.31 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
....|+|.|.+|+|||||+..+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999875
No 387
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.92 E-value=0.018 Score=50.46 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++.+...+. + .+++|.|++|+|||||++.+. ....
T Consensus 156 i~~L~~~l~-G----~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 156 IDELVDYLE-G----FICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHHHHHTT-T----CEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred HHHHHhhcc-C----cEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 455555443 3 689999999999999999998 5443
No 388
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.91 E-value=0.2 Score=41.94 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364 90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
|..+.+.+..++... .+.|+|+.|.|||.++..++...
T Consensus 95 ~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHHHc
Confidence 455555555555432 28899999999999998887764
No 389
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.89 E-value=0.0083 Score=57.84 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..++|+|++|+|||||++.++..+.+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCC
Confidence 78999999999999999999876543
No 390
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.86 E-value=0.016 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998864
No 391
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.84 E-value=0.025 Score=52.40 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=26.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEE
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFL 142 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~ 142 (373)
+.++|.|.+|+|||+|+..++..+.. +.+.+++.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 67999999999999999999998643 33444444
No 392
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.84 E-value=0.031 Score=60.65 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=48.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC-----CCcchhhhHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS-----GVWNVYDGMNMI 183 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 183 (373)
.++.|+|++|+||||||..++.........++|+.. ...... .. ... ++.... ...+..+....+
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~----E~s~~~--~~---a~~-lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA----EHALDP--IY---ARK-LGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT----TSCCCH--HH---HHH-TTCCTTTCEEECCSSHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc----CCCHHH--HH---HHH-cCCCHHHeEEeCCCCHHHHHHHH
Confidence 789999999999999999999887765556666641 111111 11 112 222111 123444445545
Q ss_pred HHhh-CCCceEEEecccc
Q 017364 184 RSRL-RHKKVLLVIDDVI 200 (373)
Q Consensus 184 ~~~l-~~~~~LlvlDdv~ 200 (373)
.... ....-++|+|.+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 4433 3456799999763
No 393
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.83 E-value=0.039 Score=51.45 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=30.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364 93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE 137 (373)
Q Consensus 93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 137 (373)
.+..+...+..+. +.+.|.|++|+|||+++..++..+.....
T Consensus 33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 3444444555432 48999999999999999999988765543
No 394
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.0062 Score=58.75 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=35.1
Q ss_pred ccCcccchhhHHHHHHHHhcCCCC---------eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 84 LKELVGLDSRLEKLRFLINKGPTD---------VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 84 ~~~~vGR~~~~~~l~~~l~~~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+.++|.+...+.+...+..+... ...|.++|++|+|||+||+.++...
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 357899888776665555444210 0158999999999999999988754
No 395
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.82 E-value=0.018 Score=47.05 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
+....+.+....... ..-.|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~~~~m~~~~~~~--~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYFQG--QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhhcC--CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333444444433322 2367899999999999999998863
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.82 E-value=0.017 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999998864
No 397
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.81 E-value=0.015 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998763
No 398
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.81 E-value=0.017 Score=47.66 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|++|+|||||+..+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998874
No 399
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.81 E-value=0.029 Score=46.04 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHEF 136 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 136 (373)
..|+|-|.-|+||||+++.+.+.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~ 30 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 5689999999999999999999886543
No 400
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.80 E-value=0.017 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEeccCCcchhHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.|+|.|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 401
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.80 E-value=0.016 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 402
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.78 E-value=0.017 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 403
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.78 E-value=0.016 Score=45.44 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 404
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.77 E-value=0.018 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 405
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.76 E-value=0.0045 Score=51.74 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364 110 MIGICGMGGIGKTTLARVVYDLISHEFEAS 139 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 139 (373)
+++|+|++|+|||||+..++.-+.+..+.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 467899999999999999998876654433
No 406
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.76 E-value=0.013 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|++|+|||||++.++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999997753
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.75 E-value=0.021 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998864
No 408
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.74 E-value=0.016 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999863
No 409
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.74 E-value=0.052 Score=52.98 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364 92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA 143 (373)
Q Consensus 92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 143 (373)
.+.+.+...|... ....|+||+|.|||+.+.++...+-.. +..+.+.
T Consensus 193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEE
Confidence 4566777777644 578899999999997655555443322 2344444
No 410
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.72 E-value=0.021 Score=44.83 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
-.|+|.|.+|+|||||+..+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999863
No 411
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.72 E-value=0.0086 Score=49.17 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|+|++|+|||||++.++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999987753
No 412
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.72 E-value=0.032 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..+|.|.|++|+||||+|+.+...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 478999999999999999999988764
No 413
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.018 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999988764
No 414
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.71 E-value=0.016 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999999886443
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.70 E-value=0.016 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|.+|+|||||+..+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 477999999999999999998753
No 416
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.69 E-value=0.032 Score=52.86 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
..+|.++|++|+||||+++.++..+...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3789999999999999999999876533
No 417
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.69 E-value=0.022 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 418
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.67 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|.|.+|+|||||+..+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 419
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.67 E-value=0.033 Score=47.88 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
+...+.........|++.|.+|+|||||+..+++.
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33334333334578999999999999999999864
No 420
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.66 E-value=0.023 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998863
No 421
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.66 E-value=0.038 Score=47.25 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+...+.........|+|.|.+|+|||||+..+.+.
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333344433334577999999999999999999864
No 422
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.63 E-value=0.0087 Score=57.86 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
..++|+|++|+|||||++.++..+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 7899999999999999999987544
No 423
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.62 E-value=0.018 Score=45.07 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 424
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.016 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
-.|+|.|.+|+|||||+..+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999999886
No 425
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.62 E-value=0.018 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998853
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.61 E-value=0.02 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+.+|+|++|+||||+...+..-+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 7899999999999999998876543
No 427
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.60 E-value=0.016 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.59 E-value=0.016 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999988754
No 429
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.58 E-value=0.018 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEeccCCcchhHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.|+|.|.+|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999998864
No 430
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.58 E-value=0.025 Score=44.38 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|.|.+|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999763
No 431
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.53 E-value=0.022 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=23.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999774
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.53 E-value=0.019 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999998864
No 433
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.53 E-value=0.022 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.0
Q ss_pred CeEEEEEeccCCcchhHHHHHHHH
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
....|+|.|.+|+|||||+..+.+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999875
No 434
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.50 E-value=0.033 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=25.4
Q ss_pred EEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 111 IGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
|+|.|.||+||||++..++..+......+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 66699999999999999999887664444444
No 435
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.50 E-value=0.019 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998864
No 436
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.49 E-value=0.02 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|.+|+|||||+..+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999874
No 437
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.47 E-value=0.023 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999874
No 438
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.46 E-value=0.021 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998874
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.45 E-value=0.023 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 440
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.41 E-value=0.029 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999863
No 441
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.40 E-value=0.022 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEeccCCcchhHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.|+|.|.+|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999998863
No 442
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.40 E-value=0.019 Score=45.55 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998853
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.40 E-value=0.024 Score=45.21 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.40 E-value=0.029 Score=44.64 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
...|+|.|.+|+|||||+..+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999988764
No 445
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.39 E-value=0.024 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 446
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.38 E-value=0.024 Score=45.35 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.35 E-value=0.028 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467899999999999999999853
No 448
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.34 E-value=0.029 Score=45.71 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467899999999999999999874
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.34 E-value=0.031 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998863
No 450
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.33 E-value=0.11 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCeEEEEEeccCCcchhHHHHHHHH
Q 017364 106 TDVRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 106 ~~~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
...++..|.|++|+||||++...+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3468999999999999999988764
No 451
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.30 E-value=0.026 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999998864
No 452
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.30 E-value=0.025 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
++.+|+|++|.|||||+..++.-
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78899999999999999988653
No 453
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.30 E-value=0.027 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|.+|+|||||+..+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 477999999999999999999863
No 454
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.30 E-value=0.026 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999999864
No 455
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.29 E-value=0.032 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999874
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.027 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46899999999999999999875
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.28 E-value=0.024 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
++.+|+|++|+|||||...++..+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999888654
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.024 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 459
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.027 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|.|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998864
No 460
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.026 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998864
No 461
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.26 E-value=0.051 Score=48.53 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=27.5
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHh--ccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLIS--HEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 142 (373)
.+++.+.|.||+||||+|..++..+. .....+..+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 48899999999999999999998877 443344433
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.026 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 463
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.25 E-value=0.026 Score=45.71 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 464
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.25 E-value=0.024 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=20.2
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998763
No 465
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.24 E-value=0.024 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999874
No 466
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.23 E-value=0.055 Score=48.03 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.7
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
.+++.+.|.||+||||++..++..+......+..+
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 47888999999999999999998877654444444
No 467
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.21 E-value=0.025 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
..|+|.|.+|+|||||+..+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999874
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.052 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEEeccCCcchhHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
..|+|.|.+|+|||||+..+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 7799999999999999999885
No 469
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.19 E-value=0.037 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998864
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.19 E-value=0.026 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 471
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.16 E-value=0.02 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred eEEEEEeccCCcchhHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVY 129 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~ 129 (373)
...|+|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 472
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.16 E-value=0.029 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 473
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.14 E-value=0.05 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.9
Q ss_pred EEEEEe-ccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 109 RMIGIC-GMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 109 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
++|+|+ +-||+||||++..++..+......+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 567776 6789999999999999877654444444
No 474
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.14 E-value=0.028 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.4
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 367899999999999999999874
No 475
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.13 E-value=0.025 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|.|.+|+|||||+..+.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999864
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.12 E-value=0.011 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
...|+|.|+.|+||||+++.+...+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987755
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.11 E-value=0.011 Score=59.72 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+++|.|++|+|||||++.++..+.+.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 689999999999999999999876544
No 478
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.11 E-value=0.027 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|.|.+|+|||||+..+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 479
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.11 E-value=0.014 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=20.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHh
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLIS 133 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~ 133 (373)
.+++|.|++|+|||||++.+.....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 6899999999999999999876443
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.11 E-value=0.027 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 481
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.10 E-value=0.029 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
..|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 482
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.07 E-value=0.05 Score=50.89 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISHE 135 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 135 (373)
.+|.++|++|+||||+++.++..+...
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 689999999999999999999876533
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.07 E-value=0.047 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=21.1
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-++|.|++|+||||+|..+..+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 67999999999999999999874
No 484
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.07 E-value=0.031 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998863
No 485
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.04 E-value=0.031 Score=45.03 Aligned_cols=25 Identities=32% Similarity=0.273 Sum_probs=20.3
Q ss_pred eEEEEEeccCCcchhHHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.-.|+|.|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999997666543
No 486
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.04 E-value=0.018 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEeccCCcchhHHHHHHHHHH
Q 017364 110 MIGICGMGGIGKTTLARVVYDLI 132 (373)
Q Consensus 110 ~v~I~G~~GiGKTtLa~~~~~~~ 132 (373)
.|+|+|++|+|||||++.++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36999999999999999998753
No 487
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.04 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357899999999999999999873
No 488
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.029 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred eEEEEEeccCCcchhHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
.-.|+|+|.+|+|||||+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.99 E-value=0.032 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 367999999999999999998863
No 490
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.97 E-value=0.037 Score=45.78 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=24.0
Q ss_pred EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 109 RMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
..|+|.|+.|+||||+++.+.+.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999998865
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.96 E-value=0.034 Score=44.93 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYD 130 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~ 130 (373)
...|+|+|.+|+|||||+..+.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999999875
No 492
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.95 E-value=0.032 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.9
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.+++|+|++|+|||||...++.-
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 58999999999999999999864
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.033 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEEeccCCcchhHHHHHHHHH
Q 017364 109 RMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 109 ~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
-.|+|+|.+|+|||||+..+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.93 E-value=0.028 Score=49.25 Aligned_cols=36 Identities=22% Similarity=0.547 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
++++...+. + .+++|.|++|+|||||++.+......
T Consensus 160 v~~lf~~l~-g----eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 160 IEELKEYLK-G----KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHHHHHHHS-S----SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HHHHHHHhc-C----CeEEEECCCCCcHHHHHHHhcccccc
Confidence 444444443 3 67999999999999999998875443
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.93 E-value=0.059 Score=51.91 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.4
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISH 134 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 134 (373)
...+|.|.|++|+||||+++.+...+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999988743
No 496
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.92 E-value=0.093 Score=46.94 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.9
Q ss_pred CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364 107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL 142 (373)
Q Consensus 107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 142 (373)
...++.+.|.||+||||+|..++..+......+..+
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 60 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV 60 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 346778889999999999999998776553333333
No 497
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.91 E-value=0.025 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.9
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
.-.|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.90 E-value=0.069 Score=44.87 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.2
Q ss_pred eEEEEEe-ccCCcchhHHHHHHHHHHhcc-ccceEEE
Q 017364 108 VRMIGIC-GMGGIGKTTLARVVYDLISHE-FEASCFL 142 (373)
Q Consensus 108 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 142 (373)
.++|+|+ +-||+||||++..++..+... ...+..+
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 3677776 568999999999999988766 3344444
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.89 E-value=0.053 Score=50.24 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=33.0
Q ss_pred cccchhhHHHHHHHHhcC---------CCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364 87 LVGLDSRLEKLRFLINKG---------PTDVRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 87 ~vGR~~~~~~l~~~l~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
=.|-++.++.+...+... ..+...++|+|++|+|||||++.+...
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 345566677776666421 123468999999999999999999874
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.88 E-value=0.034 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEEeccCCcchhHHHHHHHHH
Q 017364 108 VRMIGICGMGGIGKTTLARVVYDL 131 (373)
Q Consensus 108 ~~~v~I~G~~GiGKTtLa~~~~~~ 131 (373)
...|+|.|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
Done!