Query 017365
Match_columns 373
No_of_seqs 218 out of 944
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 1.1E-75 2.3E-80 570.9 13.8 357 1-370 108-480 (549)
2 COG4299 Uncharacterized protei 100.0 3.2E-54 6.9E-59 407.7 18.1 256 32-361 5-267 (371)
3 PF07786 DUF1624: Protein of u 99.9 1E-20 2.2E-25 176.3 18.5 113 34-158 1-118 (223)
4 COG3503 Predicted membrane pro 99.6 2.7E-14 5.8E-19 138.3 16.2 116 33-159 14-134 (323)
5 COG2311 Predicted membrane pro 99.4 3.6E-13 7.7E-18 135.8 11.1 124 26-169 4-143 (394)
6 PRK10835 hypothetical protein; 98.9 6E-09 1.3E-13 105.2 12.2 103 38-166 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.4 1.8E-05 3.8E-10 79.9 16.9 83 34-120 1-86 (358)
8 COG4645 Uncharacterized protei 97.4 0.00028 6.1E-09 70.3 6.4 85 26-114 15-102 (410)
9 PRK03854 opgC glucans biosynth 97.3 0.0019 4.2E-08 64.8 10.8 90 29-119 3-101 (375)
10 PF01757 Acyl_transf_3: Acyltr 97.2 0.0055 1.2E-07 56.9 12.7 84 36-119 2-91 (340)
11 PF06423 GWT1: GWT1; InterPro 95.7 0.042 9E-07 48.3 7.6 79 289-368 3-100 (136)
12 COG3274 Predicted O-acyltransf 95.4 1.4 3.1E-05 44.1 17.6 56 32-87 2-64 (332)
13 COG1835 Predicted acyltransfer 92.7 0.066 1.4E-06 54.0 2.3 71 26-100 6-76 (386)
14 COG3594 NolL Fucose 4-O-acetyl 88.8 0.56 1.2E-05 47.4 4.6 51 31-87 1-54 (343)
15 COG5062 Uncharacterized membra 84.1 2.2 4.8E-05 43.4 5.9 118 30-163 106-226 (429)
16 PF05857 TraX: TraX protein; 77.8 60 0.0013 30.2 13.4 67 37-115 2-68 (219)
17 PF13828 DUF4190: Domain of un 42.1 48 0.001 25.4 4.1 49 291-339 9-58 (62)
18 PF10749 DUF2534: Protein of u 32.5 1.2E+02 0.0026 24.8 5.1 22 344-365 43-68 (85)
19 TIGR02230 ATPase_gene1 F0F1-AT 31.7 1.5E+02 0.0033 24.9 5.9 28 287-314 39-68 (100)
20 KOG4683 Uncharacterized conser 30.9 36 0.00078 35.2 2.4 33 182-214 280-312 (549)
21 COG3619 Predicted membrane pro 29.4 1.3E+02 0.0027 29.0 5.7 55 65-121 51-105 (226)
22 COG4763 Predicted membrane pro 28.9 15 0.00033 37.0 -0.6 64 24-90 11-78 (388)
23 PF11654 DUF2665: Protein of u 28.5 66 0.0014 23.5 2.8 21 78-98 9-29 (47)
24 PHA02980 hypothetical protein; 25.5 5E+02 0.011 23.7 8.6 54 58-122 32-89 (160)
25 PRK13706 conjugal transfer pil 25.1 3.2E+02 0.0069 26.7 7.6 66 36-112 31-96 (248)
26 PRK13882 conjugal transfer pro 23.6 6.6E+02 0.014 24.1 10.0 76 36-117 9-84 (232)
27 KOG1619 Cytochrome b [Energy p 22.2 7.4E+02 0.016 24.2 10.6 48 291-338 169-219 (245)
28 PF11457 DUF3021: Protein of u 21.7 4.4E+02 0.0095 22.3 7.3 72 287-364 39-117 (136)
29 PF12794 MscS_TM: Mechanosensi 21.1 8.5E+02 0.018 24.4 12.5 76 77-162 91-175 (340)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-75 Score=570.87 Aligned_cols=357 Identities=40% Similarity=0.710 Sum_probs=303.1
Q ss_pred CcccccccccCCCcccCCCCcchh--hhccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHH
Q 017365 1 MSEIKAETTHHHPLIISEPDVSDQ--QEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMP 78 (373)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfP 78 (373)
|.|||.|..|.+...-...+++.- .+..++.++|+.|||+|||+++++||+||..|+.||..+|++|||++++|.|||
T Consensus 108 ~~~ik~~~~~d~~~~E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmP 187 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYDEAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMP 187 (549)
T ss_pred HHHHhhccchhhhhccchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHH
Confidence 357888888776655443344332 333355668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHH
Q 017365 79 FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (373)
Q Consensus 79 lFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all 158 (373)
+|+||+|+|+++|+++..+|....+|..-|..+|++.|+++++.+.+.++++|+..|.+++|++|||||+|++|+++|++
T Consensus 188 fFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~ 267 (549)
T KOG4683|consen 188 FFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAIL 267 (549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccc--hhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccCCCC-C
Q 017365 159 EIFTKDVQDKDQSVGR--FSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLN-P 235 (373)
Q Consensus 159 ~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~y~~l~~~l~vP~~~~~~~~~g~~~~~~~~~~~~g~~g~~~-~ 235 (373)
..++.+. ...+.+.. ++..........+...++..|..++|.+-+|+||.+|++|+| .+|..+ |
T Consensus 268 ~~~~~~~-~~~~~S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G------------~~~~~~~P 334 (549)
T KOG4683|consen 268 HTLCCRP-ISPQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGG------------KHDYNAHP 334 (549)
T ss_pred hhhccCC-CccccchhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCc------------ccccCCCC
Confidence 9877652 22221111 111111112233334455556667777778888888887764 333333 6
Q ss_pred CCChhHHhhhhhcCCCccccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHhc
Q 017365 236 PCNAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHT 315 (373)
Q Consensus 236 ~~N~a~~IDr~vlG~~HlY~~p~~~~~~~~~~~~p~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~~L~~~ 315 (373)
.||+++|.||++||.+|||++|++||+|+|++|||++|++++|+|+||+.|||||||||+|.|++++++|+++|+++.+.
T Consensus 335 ~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~ 414 (549)
T KOG4683|consen 335 KCNAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHH 414 (549)
T ss_pred CccchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCcceec---ccchHHHHHHH--------HHHHHhhhccc
Q 017365 316 KGHLARLKQWVTMGFALLIFGLTLHFTNGEHGS---GKFSTTCVCLF--------IYSKVILFQWQ 370 (373)
Q Consensus 316 ~~~~~r~~~~l~~G~~ll~~G~ll~~~~~~PiN---WT~SfVL~t~g--------~~~~v~~~~~~ 370 (373)
+.+..|+++|...+.++.++|..+++.-.+|+| ||.||+++|+| +|+.|||+.|+
T Consensus 415 k~~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~ 480 (549)
T KOG4683|consen 415 KNFQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWS 480 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 999999999999999999999999865479999 99999999987 59999998875
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.2e-54 Score=407.75 Aligned_cols=256 Identities=30% Similarity=0.402 Sum_probs=224.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccC---CCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 017365 32 TQRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (373)
Q Consensus 32 ~~Ri~sLD~lRGlai~~MIlvn~~g---~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR 108 (373)
.-|+.|+|++||+++++||+||+.+ +.|+++.|++|.|+|.+|+|||+|+|++|.+++||.+|..+.+....++.||
T Consensus 5 a~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RR 84 (371)
T COG4299 5 AFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRR 84 (371)
T ss_pred hhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHH
Confidence 4799999999999999999999965 3789999999999999999999999999999999999887777777999999
Q ss_pred HHHHHHHHHHHhhccCCCCCccccccc-ccceeeccHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhHHHHHH
Q 017365 109 TLKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLM 187 (373)
Q Consensus 109 ~~~LfllGlll~~~~~~~~~~~~~~~~-~~~~ri~GVLqrIgl~Ylv~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (373)
...+|++|++++.+.... .+.++ .+..|.+||||||++||+++++....+++ |+||+.
T Consensus 85 aa~~f~Lg~Lm~~F~~~~----~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~l 143 (371)
T COG4299 85 AAERFALGYLMGAFVTVR----DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALL 143 (371)
T ss_pred HHHHHHHHHHhhhccccc----eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHH
Confidence 999999999998752211 12344 67799999999999999999998876654 589999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccCCCCCCCChhHHhhhhhcCCCccccCcccccccccCC
Q 017365 188 AACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQ 267 (373)
Q Consensus 188 ~~~ll~~y~~l~~~l~vP~~~~~~~~~g~~~~~~~~~~~~g~~g~~~~~~N~a~~IDr~vlG~~HlY~~p~~~~~~~~~~ 267 (373)
+++++++||+++...|+|+.|. +..+|+..++|+...+.+|+|..
T Consensus 144 aavLL~gYwl~lm~~p~P~~~l------------------------~~~Gn~g~~~d~l~i~~~hLy~~----------- 188 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAPL------------------------GGIGNVGESADPLQILNDHLYSA----------- 188 (371)
T ss_pred HHHHHHHHHHHHhhcCCCcccc------------------------ccccccccccchhhhhhhhhhcc-----------
Confidence 9999999999887888887543 34568899999999999999984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhcCCccee
Q 017365 268 DSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNGEHG 347 (373)
Q Consensus 268 ~~p~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~~L~~~~~~~~r~~~~l~~G~~ll~~G~ll~~~~~~Pi 347 (373)
+ ..|||||++||+|++++++.|.+++|.++++....+...++.+.|++++++|+.|+. .+||
T Consensus 189 ----d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi 250 (371)
T COG4299 189 ----D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPI 250 (371)
T ss_pred ----c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--cccc
Confidence 2 348999999999999999999999999998877777788899999999999999985 5999
Q ss_pred c---ccchHHHHHHHHH
Q 017365 348 S---GKFSTTCVCLFIY 361 (373)
Q Consensus 348 N---WT~SfVL~t~g~~ 361 (373)
| ||||||++|+|+-
T Consensus 251 ~KkLWTssyvl~t~G~~ 267 (371)
T COG4299 251 SKKLWTSSYVLYTAGLG 267 (371)
T ss_pred chhhcCCceeehhhhHH
Confidence 9 9999999999863
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.86 E-value=1e-20 Score=176.30 Aligned_cols=113 Identities=33% Similarity=0.409 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCC-Ccc-ccc-cc--CCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 017365 34 RLASLDIFRGLAVALMILVDHAGG-DWP-EIS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (373)
Q Consensus 34 Ri~sLD~lRGlai~~MIlvn~~g~-~~~-~l~-h~--~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR 108 (373)
|+.++|++||+|+++|+++|...+ .+. ..+ +. .+....+.|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998754 111 111 11 123456789999999999999999998877665 788999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHH
Q 017365 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (373)
Q Consensus 109 ~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all 158 (373)
++.|+++|++++...+ ...++...++||||+||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~~--------~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTF--------FFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCCceeehhHHHHHHHHHHHHHHH
Confidence 9999999999987521 23346677999999999999988877
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.60 E-value=2.7e-14 Score=138.34 Aligned_cols=116 Identities=28% Similarity=0.323 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCC--CcccccccCC-Cc--hhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 017365 33 QRLASLDIFRGLAVALMILVDHAGG--DWPEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIF 107 (373)
Q Consensus 33 ~Ri~sLD~lRGlai~~MIlvn~~g~--~~~~l~h~~W-~G--~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~r 107 (373)
+|+.++|++||++++.|++.|...+ .....+-+.- .| ..++..+.|.|+|++|+|..++..|+..| .++++|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999997654 1112221110 11 24778899999999999999998777653 788999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHHH
Q 017365 108 RTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVE 159 (373)
Q Consensus 108 R~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all~ 159 (373)
|.++|..+++.++.. |+..-++++.++|||+.||++.++.+.+.
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl 134 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL 134 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 34345688999999999999998766544
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.45 E-value=3.6e-13 Score=135.84 Aligned_cols=124 Identities=26% Similarity=0.424 Sum_probs=95.6
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCccc----ccccCCC-ch-----hhHHH-----HHHHHHHHHHHHHHH
Q 017365 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPWN-GC-----NLADF-----VMPFFLFIVGVAIAL 90 (373)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~----l~h~~W~-G~-----t~~Dl-----vfPlFlFl~G~s~~l 90 (373)
.+|..+++|+.++|++||+|+++++++|.....+|. ..+..|. +. -+.|+ +.|+|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 567788899999999999999999999986544331 1122221 11 12222 579999999999999
Q ss_pred hhccCCchHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHHHHHhccccccc
Q 017365 91 ALKRIPDRAD-AVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKD 169 (373)
Q Consensus 91 s~~r~~~k~~-~~~~i~rR~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all~l~~~~~~~~~ 169 (373)
.++|+.+|++ .....+||...|+++|++|..++|++ | |-+.|.+++++.+.+.++++|+
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~G----------------D----IL~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWDG----------------D----ILLAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhcc----------------h----HHHHHHHHHHHHHHHHhccccH
Confidence 9998877765 45667999999999999998877764 4 5599999999999998887663
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.95 E-value=6e-09 Score=105.22 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCccc-------ccc--cCCCch--h-----hHHHHHHHHHHHHHHHHHHhhccCCchHHH
Q 017365 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNGC--N-----LADFVMPFFLFIVGVAIALALKRIPDRADA 101 (373)
Q Consensus 38 LD~lRGlai~~MIlvn~~g~~~~~-------l~h--~~W~G~--t-----~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~ 101 (373)
+|++||+|+++++++|......+. ..+ +.+|.. . +....+|+|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965332211 111 011111 1 12346799999999999999864321
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHHHHHhcccc
Q 017365 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (373)
Q Consensus 102 ~~~i~rR~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all~l~~~~~~ 166 (373)
...||+..|+++|++|...+|++ ||| ..|.+++++.+.+.+++
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~G----------------DIL----~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWDG----------------DIL----LAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHccc----------------hHH----HHHHHHHHHHHHHHhcc
Confidence 36699999999999998665554 566 77888888877777653
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.36 E-value=1.8e-05 Score=79.95 Aligned_cols=83 Identities=27% Similarity=0.346 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCch---HHHHHHHHHHHH
Q 017365 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDR---ADAVKKVIFRTL 110 (373)
Q Consensus 34 Ri~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k---~~~~~~i~rR~~ 110 (373)
|...||.+||++++.|.+-|.+++.+..+.+.++ .+.| .+-.|+|++|++..+.+.|+..| ....+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999777777776764433444333 3444 24689999999999999876543 246789999999
Q ss_pred HHHHHHHHHh
Q 017365 111 KLLFWGILLQ 120 (373)
Q Consensus 111 ~LfllGlll~ 120 (373)
.|...-+++.
T Consensus 77 ~lY~a~i~l~ 86 (358)
T PF10129_consen 77 QLYVAHIALF 86 (358)
T ss_pred HHHHHHHHHH
Confidence 8877666554
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.00028 Score=70.33 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=62.5
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchH-H--HH
Q 017365 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA-D--AV 102 (373)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~-~--~~ 102 (373)
|+.+...+|+..||.+||++++.|.+-|.++..+..++|.+. .+.|- +-.|+|++|++..+.+.|+.-++ + ..
T Consensus 15 ~~~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~ 90 (410)
T COG4645 15 ERRAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGT 90 (410)
T ss_pred ccccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHH
Confidence 334445689999999999999887766667765555667553 33332 35799999999999998876442 3 34
Q ss_pred HHHHHHHHHHHH
Q 017365 103 KKVIFRTLKLLF 114 (373)
Q Consensus 103 ~~i~rR~~~Lfl 114 (373)
.|+.||+..|..
T Consensus 91 lkiWrRA~~LY~ 102 (410)
T COG4645 91 LKIWRRAMVLYV 102 (410)
T ss_pred HHHHHHHHHHHH
Confidence 589999999887
No 9
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.28 E-value=0.0019 Score=64.79 Aligned_cols=90 Identities=21% Similarity=0.131 Sum_probs=58.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCC--Cccc----ccccCCCch-h-hHH-HHHHHHHHHHHHHHHHhhccCCchH
Q 017365 29 HLKTQRLASLDIFRGLAVALMILVDHAGG--DWPE----ISHAPWNGC-N-LAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (373)
Q Consensus 29 ~~~~~Ri~sLD~lRGlai~~MIlvn~~g~--~~~~----l~h~~W~G~-t-~~D-lvfPlFlFl~G~s~~ls~~r~~~k~ 99 (373)
+++++|...+|.+||+++++.++.|.... ..+. .+...|... . ..+ ..+|+|.+++|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 45568999999999999999999987421 1100 011112111 0 111 347999999999988876554 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017365 100 DAVKKVIFRTLKLLFWGILL 119 (373)
Q Consensus 100 ~~~~~i~rR~~~LfllGlll 119 (373)
+..++-++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 56677788888777777554
No 10
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.24 E-value=0.0055 Score=56.85 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccc-ccccCCCch-----hhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 017365 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPWNGC-----NLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (373)
Q Consensus 36 ~sLD~lRGlai~~MIlvn~~g~~~~~-l~h~~W~G~-----t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~ 109 (373)
.++|.+||++++++++.|........ ......... .......|+|.+++|+.+....+++++..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 58999999999999999986531111 111000000 345567899999999999811112222233444555555
Q ss_pred HHHHHHHHHH
Q 017365 110 LKLLFWGILL 119 (373)
Q Consensus 110 ~~LfllGlll 119 (373)
...+++..++
T Consensus 82 ~~~~~~~~~~ 91 (340)
T PF01757_consen 82 LIPYLFWSLI 91 (340)
T ss_pred hHHHHHHHHH
Confidence 5544444433
No 11
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=95.74 E-value=0.042 Score=48.29 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=55.5
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHhhcCCcceec---ccchHHHH
Q 017365 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHL---------ARLKQWVTMGFALLIFGLTLHFTNGEHGS---GKFSTTCV 356 (373)
Q Consensus 289 PEGlLstlpai~~~llG~~aG~~L~~~~~~~---------~r~~~~l~~G~~ll~~G~ll~~~~~~PiN---WT~SfVL~ 356 (373)
-||++|.+.-++-=++|+..|+.+...+... +...+++.+++++-++-++++.. ..|+. .-.+||++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSY-IEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHhcchHHHHH
Confidence 5999999999999999999999986543322 33455667777777777777532 57877 44555544
Q ss_pred -------HHHHHHHHhhhc
Q 017365 357 -------CLFIYSKVILFQ 368 (373)
Q Consensus 357 -------t~g~~~~v~~~~ 368 (373)
....|..+|.--
T Consensus 82 v~a~n~~~l~~~~~i~~~~ 100 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELLL 100 (136)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 455677777543
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=95.37 E-value=1.4 Score=44.13 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=39.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCC-Cccc-cccc-CC---Cch-hhHHHHHHHHHHHHHHH
Q 017365 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPE-ISHA-PW---NGC-NLADFVMPFFLFIVGVA 87 (373)
Q Consensus 32 ~~Ri~sLD~lRGlai~~MIlvn~~g~-~~~~-l~h~-~W---~G~-t~~DlvfPlFlFl~G~s 87 (373)
.+|+.++|++|++|++..+.+|.... .+.+ +.|. .| |+. +..-.+.|+|..++|.-
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL 64 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL 64 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999997542 1222 2222 13 443 34456789999999975
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=92.75 E-value=0.066 Score=53.96 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=45.5
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHH
Q 017365 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (373)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~ 100 (373)
......++|+.+||.+||+|.+..++.|......+. +..+.+ ...+...+|..++|+-+.-++.++.++++
T Consensus 6 ~~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 6 TAINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccc--ccccceeEeeeccHHHHHHHHHHHhhcCC
Confidence 334455789999999999999999998875532111 111110 11122347899999999998766544433
No 14
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=88.82 E-value=0.56 Score=47.38 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=37.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCCc---hhhHHHHHHHHHHHHHHH
Q 017365 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNG---CNLADFVMPFFLFIVGVA 87 (373)
Q Consensus 31 ~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G---~t~~DlvfPlFlFl~G~s 87 (373)
+++|..++|+.||+-|++.++-|..+..++ |.- ....-.-+|+|.|++|+-
T Consensus 1 ~~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 1 MKKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred CchhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 468999999999999999999997653221 321 112233489999999986
No 15
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=84.12 E-value=2.2 Score=43.37 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=65.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhccCC--Ccc-cccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 017365 30 LKTQRLASLDIFRGLAVALMILVDHAGG--DWP-EISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVI 106 (373)
Q Consensus 30 ~~~~Ri~sLD~lRGlai~~MIlvn~~g~--~~~-~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~ 106 (373)
..+.|...+|..|+..+..-++.=...+ .+| -+..++-.|.+.-|+-.-.|++-.|+-- .|.++ ++.+
T Consensus 106 ~~~~~~~~it~yR~~i~~~tviaIlAvDFp~fprRlgKsetwGtsLMDiGVGSFvynsGivs----~Raks-----K~~l 176 (429)
T COG5062 106 DEPYTSMAITRYRFLIIGCTVIAILAVDFPFFPRRLGKSETWGTSLMDIGVGSFVYNSGIVS----TRAKS-----KRKL 176 (429)
T ss_pred ccccchhhhHHHHHHHHHhhhhheeeeccccchHhhhhhhcccceeeecccceeEeccceee----cccCc-----cHHH
Confidence 3456889999999965533222111111 112 1333444478888998888988888641 22222 3478
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHHHHHHHHHHHHHHHHhc
Q 017365 107 FRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTK 163 (373)
Q Consensus 107 rR~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqrIgl~Ylv~all~l~~~ 163 (373)
|-++.|+.+|++=...-- .+. -.++.|=.||=.-.-+.-.++.+.+.+.+
T Consensus 177 kn~lillflGflR~f~vk----~ln---yqvhvrEyGvhwNFfftLgllnl~~~fir 226 (429)
T COG5062 177 KNALILLFLGFLRYFSVK----LLN---YQVHVREYGVHWNFFFTLGLLNLASLFIR 226 (429)
T ss_pred HhhhHHHHHHHHHHHHHH----Hhc---cccccHHheeehhHHHHHHHHHHHHHHhh
Confidence 899999999997543200 011 13455555654443344444455554443
No 16
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=77.80 E-value=60 Score=30.16 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 017365 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFW 115 (373)
Q Consensus 37 sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~Lfll 115 (373)
|-|.+.=+|++.|++-|..... ....+| -..+.-+.||+|.|+..-++.-. +..+|..+|.+...++
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~---~~~~~~-~~~iGR~afPlF~f~~~eG~~~T--------~n~~kY~~RL~~~ali 68 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLF---FPDGPW-LRIIGRIAFPLFAFLLVEGFFHT--------RNRKKYLLRLLIFALI 68 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccc---cCcchH-HHHhhHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHH
Confidence 4588888999999999976221 222222 12356678999999987765442 2346677776554433
No 17
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=42.11 E-value=48 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHh
Q 017365 291 GLLSSVSSILSTIIGVHFGHVI-IHTKGHLARLKQWVTMGFALLIFGLTL 339 (373)
Q Consensus 291 GlLstlpai~~~llG~~aG~~L-~~~~~~~~r~~~~l~~G~~ll~~G~ll 339 (373)
|++|.+....+...|+..|++= ++-+...++=+.+...|+++..++.++
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 3444443344555666666663 222222233344566677766665544
No 18
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=32.48 E-value=1.2e+02 Score=24.81 Aligned_cols=22 Identities=23% Similarity=-0.090 Sum_probs=14.5
Q ss_pred cceec-ccchHHHHHHH---HHHHHh
Q 017365 344 GEHGS-GKFSTTCVCLF---IYSKVI 365 (373)
Q Consensus 344 ~~PiN-WT~SfVL~t~g---~~~~v~ 365 (373)
-+|.. ||.|.-..-+. +|++|.
T Consensus 43 niP~s~WttsMf~~Q~ami~vYS~VF 68 (85)
T PF10749_consen 43 NIPFSEWTTSMFILQGAMILVYSIVF 68 (85)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 38999 99986554432 566653
No 19
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.71 E-value=1.5e+02 Score=24.92 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCcchhhhhHH--HHHHHHHHHHHHHHHh
Q 017365 287 FEPEGLLSSVSS--ILSTIIGVHFGHVIIH 314 (373)
Q Consensus 287 fDPEGlLstlpa--i~~~llG~~aG~~L~~ 314 (373)
+.-=|++|++.. ++.+++|+..|++|-+
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567777765 4578999999999954
No 20
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=36 Score=35.21 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcccccCC
Q 017365 182 CWHWLMAACVLVVYLALLYGTYVPDWQFTIINK 214 (373)
Q Consensus 182 ~~~~~~~~~ll~~y~~l~~~l~vP~~~~~~~~~ 214 (373)
.||-++..+.|+.|.+..++-+||++..-..|.
T Consensus 280 S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~ 312 (549)
T KOG4683|consen 280 SWQRAVHDVCLFSGELAVLLALVATYLGLTFGL 312 (549)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhhhceeccc
Confidence 456677778888898888888999886544333
No 21
>COG3619 Predicted membrane protein [Function unknown]
Probab=29.42 E-value=1.3e+02 Score=28.98 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=38.0
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 017365 65 APWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQG 121 (373)
Q Consensus 65 ~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~LfllGlll~~ 121 (373)
++++.....+...|.+.|++|+...-.++|+..| ...-.+.+...++.+++....
T Consensus 51 ~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~ 105 (226)
T COG3619 51 AEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLAL 105 (226)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHH
Confidence 3445556778899999999999888887766544 223345566666666666544
No 22
>COG4763 Predicted membrane protein [Function unknown]
Probab=28.87 E-value=15 Score=36.98 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=42.1
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHhccCCCccc---ccccCCCchhhHH-HHHHHHHHHHHHHHHH
Q 017365 24 QQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE---ISHAPWNGCNLAD-FVMPFFLFIVGVAIAL 90 (373)
Q Consensus 24 ~~~~~~~~~~Ri~sLD~lRGlai~~MIlvn~~g~~~~~---l~h~~W~G~t~~D-lvfPlFlFl~G~s~~l 90 (373)
||..-+++|+|..-+|...|+.|++.++.|..-..|+. +.|.- + .+.| +=+|.|...+|.-..-
T Consensus 11 apdgfamnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l-~--~~l~p~rmP~Ffl~sg~F~~~ 78 (388)
T COG4763 11 APDGFAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL-S--EVLSPCRMPYFFLYSGPFRMP 78 (388)
T ss_pred CCCccccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH-H--HhhchhhhHHHHHHhhHHHhH
Confidence 34444566899999999999999998888875443432 33321 1 1233 3478999888865433
No 23
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=28.49 E-value=66 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhccCCch
Q 017365 78 PFFLFIVGVAIALALKRIPDR 98 (373)
Q Consensus 78 PlFlFl~G~s~~ls~~r~~~k 98 (373)
|+|...+|++.++.+.++..+
T Consensus 9 P~~av~iG~~ayyl~e~R~~r 29 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGR 29 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccC
Confidence 889999999999999876533
No 24
>PHA02980 hypothetical protein; Provisional
Probab=25.53 E-value=5e+02 Score=23.65 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=35.2
Q ss_pred CcccccccCCCchhhHHHHH----HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 017365 58 DWPEISHAPWNGCNLADFVM----PFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (373)
Q Consensus 58 ~~~~l~h~~W~G~t~~Dlvf----PlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~LfllGlll~~~ 122 (373)
.|..++..+|+ +-|-+| +.--.+||+|..+..+++.. .++.+.++.+-+++|..
T Consensus 32 ~Y~~L~KP~~~---PP~wvF~pVWtiLY~lMgiA~~lvw~~~~~--------~~~al~ly~~QL~LN~~ 89 (160)
T PHA02980 32 NYTKSNKHLIF---PPYYVRFSLYIISYIFMGHGMYLIHTRRRD--------SNELIAYYILQLSINLS 89 (160)
T ss_pred CCccccCCCCC---CCcchHHHHHHHHHHHHHHHHHHHHHcccc--------cchHHHHHHHHHHHHHH
Confidence 35556666563 333333 44566799999998754211 46778899999999875
No 25
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=25.06 E-value=3.2e+02 Score=26.74 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 017365 36 ASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKL 112 (373)
Q Consensus 36 ~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~L 112 (373)
-++|.+.=+|++.|.+-|.... .+ ...+|- ..+.-+.||+|.|.-|+=++.- .+..+|..+|....
T Consensus 31 g~~dlLK~IAli~M~iDHi~~~-~~--~~~~~l-~~iGRlAfPiFafVeGfNla~h-------T~~r~kY~~RL~if 96 (248)
T PRK13706 31 GQRDIIKTVALVLMVLDHINRI-LH--LDQEWM-FLAGRGAFPLFALVWGLNLSRH-------AHIRQPAINRLWGW 96 (248)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-hC--CcHHHH-HHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHH
Confidence 4689999999999999886432 11 111120 1255678999999655532221 12346667776554
No 26
>PRK13882 conjugal transfer protein TrbP; Provisional
Probab=23.60 E-value=6.6e+02 Score=24.06 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 017365 36 ASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFW 115 (373)
Q Consensus 36 ~sLD~lRGlai~~MIlvn~~g~~~~~l~h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~r~~~k~~~~~~i~rR~~~Lfll 115 (373)
.+.|.+.=+|++.|.+-|...-..+. +...| ..+.-+.||+|.|+...=++= + .-...+..+|..+|.....++
T Consensus 9 ~~~~~LK~IAli~M~iDHi~~~~~~~-~~~~~--~~iGR~AfPiF~f~lv~nl~~--e-Gf~hT~n~~kY~~RL~ifAli 82 (232)
T PRK13882 9 GTREALKWLALLLMTGDHVNKYLFNG-TLPVL--FEAGRVALPLFVFVLAYNLAR--P-GALERGDYGRTMKRLALFGLL 82 (232)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCC-ChHHH--HHhhHHHHHHHHHHHHHhhcc--c-cchhcccHHHHHHHHHHHHHH
Confidence 35688999999999998864311110 01112 236678899999997632210 0 000112346677776554444
Q ss_pred HH
Q 017365 116 GI 117 (373)
Q Consensus 116 Gl 117 (373)
--
T Consensus 83 se 84 (232)
T PRK13882 83 AS 84 (232)
T ss_pred HH
Confidence 33
No 27
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=22.16 E-value=7.4e+02 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=25.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHH-HHHHHHHHHHHH
Q 017365 291 GLLSSVSSILSTIIGVHFGHVIIHTK--GHLARLKQWV-TMGFALLIFGLT 338 (373)
Q Consensus 291 GlLstlpai~~~llG~~aG~~L~~~~--~~~~r~~~~l-~~G~~ll~~G~l 338 (373)
|+...+-|++|+.+|+..-......+ +.+.+-..+. ..|+..++.|.+
T Consensus 169 Gl~~f~lai~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~ 219 (245)
T KOG1619|consen 169 GLAIFILAIVTALTGLLEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVL 219 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888884443333222 1112222222 456666666633
No 28
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.71 E-value=4.4e+02 Score=22.26 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHhcc-ch----HHHHHHHHHHHHHHHHHHHHhhcCCcceec--ccchHHHHHHH
Q 017365 287 FEPEGLLSSVSSILSTIIGVHFGHVIIHTK-GH----LARLKQWVTMGFALLIFGLTLHFTNGEHGS--GKFSTTCVCLF 359 (373)
Q Consensus 287 fDPEGlLstlpai~~~llG~~aG~~L~~~~-~~----~~r~~~~l~~G~~ll~~G~ll~~~~~~PiN--WT~SfVL~t~g 359 (373)
.+++-+++.+.++ ++|..+|-.=.-++ +. ++.+.+..+.-+..+.++.+++ ++|.+ +...|.+.=..
T Consensus 39 ~~~~~~~~~~~~~---~ig~~~gl~s~if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~g---W~~~~~~~~~~~~~~fi~ 112 (136)
T PF11457_consen 39 ISVSSILSVLVAV---LIGAVFGLASLIFEIERWSLLKQTIIHFIITYAIFLILAYLLG---WFPLSVISLLIFILIFII 112 (136)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhC---CcchhhHHHHHHHHHHHH
Confidence 3445566666552 56666665421111 12 2223455566666677777765 58998 33333333234
Q ss_pred HHHHH
Q 017365 360 IYSKV 364 (373)
Q Consensus 360 ~~~~v 364 (373)
+|.+|
T Consensus 113 IYliI 117 (136)
T PF11457_consen 113 IYLII 117 (136)
T ss_pred HHHHH
Confidence 44444
No 29
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.05 E-value=8.5e+02 Score=24.42 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhccCC-------ch--HHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeeccHHHH
Q 017365 77 MPFFLFIVGVAIALALKRIP-------DR--ADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQR 147 (373)
Q Consensus 77 fPlFlFl~G~s~~ls~~r~~-------~k--~~~~~~i~rR~~~LfllGlll~~~~~~~~~~~~~~~~~~~~ri~GVLqr 147 (373)
...+.+++.+...+...+.. ++ -+..+|.++|....++.-++...... +.+.-..-|+|.|
T Consensus 91 ~a~~~~~~~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~----------~~~~~~~~d~LGr 160 (340)
T PF12794_consen 91 MALFWLVFEFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAE----------NLPDGLARDVLGR 160 (340)
T ss_pred HHHHHHHHHHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCchhhhhhhHHH
Confidence 34455555566555554321 11 24567888888888887777665311 1222234588888
Q ss_pred HHHHHHHHHHHHHHh
Q 017365 148 IALSYLLVSLVEIFT 162 (373)
Q Consensus 148 Igl~Ylv~all~l~~ 162 (373)
+++....+.+.+...
T Consensus 161 l~~ii~~~~l~~~~~ 175 (340)
T PF12794_consen 161 LAFIILLLLLAVFLW 175 (340)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887666555554433
Done!