Query 017365
Match_columns 373
No_of_seqs 218 out of 944
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 17.0 1E+02 0.0036 20.9 2.8 22 292-313 7-28 (41)
2 3n2f_G Na+/K+ ATPase gamma sub 16.6 45 0.0015 21.4 0.9 28 64-91 4-31 (31)
3 3p5n_A RIBU, riboflavin uptake 16.1 3.3E+02 0.011 23.5 6.8 52 288-341 81-132 (189)
4 2jo1_A Phospholemman; FXYD1, N 14.9 1.4E+02 0.0048 22.6 3.3 30 64-93 10-39 (72)
5 2jp3_A FXYD domain-containing 13.9 1.3E+02 0.0043 22.6 2.8 30 64-93 11-40 (67)
6 2zxe_G FXYD10, phospholemman-l 12.7 1.2E+02 0.0042 23.1 2.5 30 64-93 13-42 (74)
7 4aps_A DI-OR tripeptide H+ sym 10.4 3.4E+02 0.012 25.5 5.5 52 288-339 319-370 (491)
8 2w7q_A Outer-membrane lipoprot 8.5 13 0.00044 32.5 -5.1 18 6-23 1-18 (204)
9 1pw4_A Glycerol-3-phosphate tr 6.6 8.1E+02 0.028 22.2 6.3 26 290-315 64-89 (451)
10 2ks1_B Epidermal growth factor 5.1 6.9E+02 0.024 16.9 3.4 27 140-166 13-39 (44)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=16.96 E-value=1e+02 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 017365 292 LLSSVSSILSTIIGVHFGHVII 313 (373)
Q Consensus 292 lLstlpai~~~llG~~aG~~L~ 313 (373)
-|||-|-+++.-+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 2
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=16.62 E-value=45 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.9
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHh
Q 017365 64 HAPWNGCNLADFVMPFFLFIVGVAIALA 91 (373)
Q Consensus 64 h~~W~G~t~~DlvfPlFlFl~G~s~~ls 91 (373)
|.+|+......+++..-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 3456667777888888889998887654
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=16.14 E-value=3.3e+02 Score=23.49 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=27.7
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhc
Q 017365 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHF 341 (373)
Q Consensus 288 DPEGlLstlpai~~~llG~~aG~~L~~~~~~~~r~~~~l~~G~~ll~~G~ll~~ 341 (373)
+|-|.+.+ .++.+..|+.+|-+-++.++.++.+.-.+...+++.+.+.+++.
T Consensus 81 ~~~g~~~~--~l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~ 132 (189)
T 3p5n_A 81 DPVGPFAN--FLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNY 132 (189)
T ss_dssp CSSHHHHH--HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 45567778888866544333333333333334455666777764
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.86 E-value=1.4e+02 Score=22.62 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=24.5
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 017365 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (373)
Q Consensus 64 h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~ 93 (373)
|-+|+.+....++|...+|++|+.+-+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 334666667889999999999999999974
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=13.94 E-value=1.3e+02 Score=22.60 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=24.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 017365 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (373)
Q Consensus 64 h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~ 93 (373)
|-+|+.+....++|...+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 334666667889999999999999999864
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=12.72 E-value=1.2e+02 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.7
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 017365 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (373)
Q Consensus 64 h~~W~G~t~~DlvfPlFlFl~G~s~~ls~~ 93 (373)
|-+|+.+....++|...+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 344666678889999999999999999864
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=10.38 E-value=3.4e+02 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q 017365 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 339 (373)
Q Consensus 288 DPEGlLstlpai~~~llG~~aG~~L~~~~~~~~r~~~~l~~G~~ll~~G~ll 339 (373)
-+.|++.+++++...+.+...|++..+...++....+.+..|.++..+++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999876543322222223344555555555443
No 8
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=8.47 E-value=13 Score=32.47 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=2.4
Q ss_pred cccccCCCcccCCCCcch
Q 017365 6 AETTHHHPLIISEPDVSD 23 (373)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (373)
||..|||.+.|.=.....
T Consensus 1 ~~~~~~~~~~~~~~~~~a 18 (204)
T 2w7q_A 1 AEHHHHHHLVPRGSIAID 18 (204)
T ss_dssp ------------CCCSSC
T ss_pred CCcccccccccccccccc
Confidence 577788877765444333
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.61 E-value=8.1e+02 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhc
Q 017365 290 EGLLSSVSSILSTIIGVHFGHVIIHT 315 (373)
Q Consensus 290 EGlLstlpai~~~llG~~aG~~L~~~ 315 (373)
-|++.++..+...+....+|.+..+.
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 57889999999999999999887543
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.05 E-value=6.9e+02 Score=16.86 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=14.8
Q ss_pred eeccHHHHHHHHHHHHHHHHHHhcccc
Q 017365 140 RLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (373)
Q Consensus 140 ri~GVLqrIgl~Ylv~all~l~~~~~~ 166 (373)
...||..-+++.-+++.+.+++.++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 345666655554455555555666554
Done!