Query 017365
Match_columns 373
No_of_seqs 218 out of 944
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 27.0 23 0.0017 22.4 2.8 22 292-313 7-28 (41)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 10.1 2E+02 0.014 24.0 5.9 26 290-315 61-86 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.8 2.6E+02 0.019 22.2 5.1 25 291-315 46-70 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.2 5E+02 0.036 21.1 6.8 25 291-315 288-312 (447)
5 d3d31c1 f.58.1.1 (C:13-260) Su 6.0 2.7E+02 0.02 22.0 4.7 34 292-325 54-87 (248)
6 d1v54c_ f.25.1.1 (C:) Mitochon 4.9 7.7E+02 0.056 20.0 7.5 72 286-358 121-200 (259)
7 d1knya2 d.218.1.1 (A:1-125) Ka 4.6 82 0.006 23.8 0.1 11 286-296 109-119 (125)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.1 3.6E+02 0.026 21.9 4.2 33 292-324 84-116 (290)
9 d2onkc1 f.58.1.1 (C:1-252) Mol 3.0 6E+02 0.044 19.7 4.5 32 292-323 56-87 (252)
10 d1q5za_ a.196.1.1 (A:) Invasio 2.9 2.2E+02 0.016 21.9 1.2 17 286-302 6-22 (145)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=27.01 E-value=23 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 017365 292 LLSSVSSILSTIIGVHFGHVII 313 (373)
Q Consensus 292 lLstlpai~~~llG~~aG~~L~ 313 (373)
-|||-|-+++..+++.||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.07 E-value=2e+02 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhc
Q 017365 290 EGLLSSVSSILSTIIGVHFGHVIIHT 315 (373)
Q Consensus 290 EGlLstlpai~~~llG~~aG~~L~~~ 315 (373)
-|++.++..+...+....+|.+..+.
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47889999999999999999887543
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.81 E-value=2.6e+02 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhc
Q 017365 291 GLLSSVSSILSTIIGVHFGHVIIHT 315 (373)
Q Consensus 291 GlLstlpai~~~llG~~aG~~L~~~ 315 (373)
|++.++..+...+.....|.+..+.
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999987543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=5e+02 Score=21.11 Aligned_cols=25 Identities=4% Similarity=-0.195 Sum_probs=15.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhc
Q 017365 291 GLLSSVSSILSTIIGVHFGHVIIHT 315 (373)
Q Consensus 291 GlLstlpai~~~llG~~aG~~L~~~ 315 (373)
+...++..+..++..+.+|.+..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhc
Confidence 5566666666666666666665443
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=6.03 E-value=2.7e+02 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 017365 292 LLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQW 325 (373)
Q Consensus 292 lLstlpai~~~llG~~aG~~L~~~~~~~~r~~~~ 325 (373)
..+.+.++.++++|+.++..+.+.+...+|..+.
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~ 87 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRLVES 87 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 4566777888899999998886655544554443
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.92 E-value=7.7e+02 Score=20.02 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=34.2
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhh---cC-Ccceec---ccchHHHHH
Q 017365 286 PFEPEGLLSSVSSILSTIIGVHFGHVIIH-TKGHLARLKQWVTMGFALLIFGLTLH---FT-NGEHGS---GKFSTTCVC 357 (373)
Q Consensus 286 ~fDPEGlLstlpai~~~llG~~aG~~L~~-~~~~~~r~~~~l~~G~~ll~~G~ll~---~~-~~~PiN---WT~SfVL~t 357 (373)
+.||.++ ..+++++...-|..+..-.+. +++++++.++++...+++.++=...+ +. ..+-++ +.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 4565543 345556656666654444322 23344455556655544443333222 11 123334 666776666
Q ss_pred H
Q 017365 358 L 358 (373)
Q Consensus 358 ~ 358 (373)
.
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=4.56 E-value=82 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=9.0
Q ss_pred CCCCcchhhhh
Q 017365 286 PFEPEGLLSSV 296 (373)
Q Consensus 286 ~fDPEGlLstl 296 (373)
-|||||+++.+
T Consensus 109 LyD~~g~~~~l 119 (125)
T d1knya2 109 IYDSGGYLEKV 119 (125)
T ss_dssp EEESSSHHHHH
T ss_pred eecCcchHHHH
Confidence 38999998865
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.12 E-value=3.6e+02 Score=21.94 Aligned_cols=33 Identities=6% Similarity=-0.085 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 017365 292 LLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQ 324 (373)
Q Consensus 292 lLstlpai~~~llG~~aG~~L~~~~~~~~r~~~ 324 (373)
+++.+.++.++++|+.++..+.+.+...++...
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~ 116 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKATLL 116 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Confidence 345566778888999999998766655555443
No 9
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.01 E-value=6e+02 Score=19.74 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccchHHHHH
Q 017365 292 LLSSVSSILSTIIGVHFGHVIIHTKGHLARLK 323 (373)
Q Consensus 292 lLstlpai~~~llG~~aG~~L~~~~~~~~r~~ 323 (373)
..+.+.++.++.+|+..+-.+.+++...++..
T Consensus 56 ~~~~~~~~i~~i~g~~la~~l~~~~~~~~~~~ 87 (252)
T d2onkc1 56 YAALISTLIAVIFGTPLAYILARKSFPGKSVV 87 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 34566777788889999888765554444443
No 10
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.92 E-value=2.2e+02 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.7
Q ss_pred CCCCcchhhhhHHHHHH
Q 017365 286 PFEPEGLLSSVSSILST 302 (373)
Q Consensus 286 ~fDPEGlLstlpai~~~ 302 (373)
.|--.|.||++|++..+
T Consensus 6 kFkqngfLs~iPsvt~m 22 (145)
T d1q5za_ 6 KFKQNSFLSTVPSVTNM 22 (145)
T ss_dssp CBCTTTTGGGSCCHHHH
T ss_pred eeccCCceeecchHHHH
Confidence 46677999999998763
Done!