BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017367
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 171/361 (47%), Gaps = 72/361 (19%)
Query: 7 FRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLVGDVTYANLYLTN 64
F T P +G P ++GDLG ++++ T++H +S + VL VGD++YA+ Y
Sbjct: 108 FITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRY--- 163
Query: 65 GTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE-AQAGNQT-- 121
P H+ RWD WGRF + V+ P + GNHEIE A N+T
Sbjct: 164 --------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEP 207
Query: 122 FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDR 181
F +S R+ P E S S S F+YS H I+L +Y +Y + QY WL+K+L V R
Sbjct: 208 FKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKR 267
Query: 182 SVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFN 241
S TPWL+ E E MR + EA Y VD+VF GHVHAYERS RV N
Sbjct: 268 SETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSN 327
Query: 242 YTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCA 290
D PV+ITIGD GN + N +P
Sbjct: 328 IAYKITNGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP------------- 367
Query: 291 TNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVKNETWALWTWHRNQDSNNKVGDQIY 350
QP+YSAFRE+SFGHG+ ++KN T A ++W+RNQD D ++
Sbjct: 368 ----------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVW 411
Query: 351 I 351
Sbjct: 412 F 412
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 171/361 (47%), Gaps = 72/361 (19%)
Query: 7 FRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLVGDVTYANLYLTN 64
F T P +G P ++GDLG ++++ T++H +S + VL VGD++YA+ Y
Sbjct: 116 FITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRY--- 171
Query: 65 GTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE-AQAGNQT-- 121
P H+ RWD WGRF + V+ P + GNHEIE A N+T
Sbjct: 172 --------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEP 215
Query: 122 FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDR 181
F +S R+ P E S S S F+YS H I+L +Y +Y + QY WL+K+L V R
Sbjct: 216 FKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKR 275
Query: 182 SVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFN 241
S TPWL+ E E MR + EA Y VD+VF GHVHAYERS RV N
Sbjct: 276 SETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSN 335
Query: 242 YTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCA 290
D PV+ITIGD GN + N +P
Sbjct: 336 IAYKITDGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP------------- 375
Query: 291 TNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVKNETWALWTWHRNQDSNNKVGDQIY 350
QP+YSAFRE+SFGHG+ ++KN T A ++W+RNQD D ++
Sbjct: 376 ----------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVW 419
Query: 351 I 351
Sbjct: 420 F 420
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 171/361 (47%), Gaps = 72/361 (19%)
Query: 7 FRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLVGDVTYANLYLTN 64
F T P +G P ++GDLG ++++ T++H +S + VL VGD++YA+ Y
Sbjct: 110 FITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRY--- 165
Query: 65 GTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE-AQAGNQT-- 121
P H+ RWD WGRF + V+ P + GNHEIE A N+T
Sbjct: 166 --------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEP 209
Query: 122 FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDR 181
F +S R+ P E S S S F+YS H I+L +Y +Y + QY WL+K+L V R
Sbjct: 210 FKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKR 269
Query: 182 SVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFN 241
S TPWL+ E E MR + EA Y VD+VF GHVHAYERS RV N
Sbjct: 270 SETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSN 329
Query: 242 YTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCA 290
D PV+ITIGD GN + N +P
Sbjct: 330 IAYKITNGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP------------- 369
Query: 291 TNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVKNETWALWTWHRNQDSNNKVGDQIY 350
QP+YSAFRE+SFGHG+ ++KN T A ++W+RNQD D ++
Sbjct: 370 ----------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVW 413
Query: 351 I 351
Sbjct: 414 F 414
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 170/366 (46%), Gaps = 72/366 (19%)
Query: 5 YYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINHMSSNEP--DLVLLVGDVTYANLYL 62
++F T P GP P ++GD+G T+++ T+ H N VL +GD++Y+N
Sbjct: 113 FWFVTPPKPGPDV-PYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSN--- 168
Query: 63 TNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQ---AGN 119
+ P H+ RWD WGRF + V+ P + GNHEI+
Sbjct: 169 --------------RWPNHD--NNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEY 212
Query: 120 QTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANV 179
Q FV +++R+ P E SGS +Y+ H I+L +Y + K QYKW +L V
Sbjct: 213 QPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKV 272
Query: 180 DRSVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRV 239
+RS TPWL+ E E MR E Y VDIVF+GHVH+YERS RV
Sbjct: 273 NRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERV 332
Query: 240 FNYTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGF 288
N D PV+ITIGDGGN E ++ S P
Sbjct: 333 SNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLA-------------SEMTQP----- 374
Query: 289 CATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVKNETWALWTWHRNQDSNNKVGDQ 348
QP YSAFRE+SFGHGI ++KN T A ++WHRNQD + D
Sbjct: 375 ------------------QPSYSAFREASFGHGIFDIKNRTHAHFSWHRNQDGASVEADS 416
Query: 349 IYIVRQ 354
++++ +
Sbjct: 417 LWLLNR 422
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 103 PIMVVEGN-HEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGG 150
P+ V+EG+ +I + + + ++ +F PSE L Y N GG
Sbjct: 124 PVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGG 172
>pdb|1R3H|A Chain A, Crystal Structure Of T10
pdb|1R3H|C Chain C, Crystal Structure Of T10
pdb|1R3H|E Chain E, Crystal Structure Of T10
pdb|1R3H|G Chain G, Crystal Structure Of T10
Length = 260
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 SDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINHMSSNEP 46
DV + T PA G ++ K A+V LG + TC ++H EP
Sbjct: 210 QDVEFVETRPA-GDGTFQKWAAVVVPLGKVQSYTCHVDHEGLPEP 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,379,218
Number of Sequences: 62578
Number of extensions: 540661
Number of successful extensions: 1155
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 12
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)