Query 017368
Match_columns 373
No_of_seqs 165 out of 1360
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 1.9E-59 6.6E-64 477.0 27.1 240 28-369 3-252 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.3E-59 4.4E-64 480.4 25.9 250 19-369 9-269 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 9.2E-59 3.1E-63 471.7 23.9 238 31-368 2-244 (435)
4 3i7f_A Aspartyl-tRNA synthetas 100.0 3.1E-57 1.1E-61 470.4 24.7 236 39-369 54-359 (548)
5 1c0a_A Aspartyl tRNA synthetas 100.0 5.3E-57 1.8E-61 473.3 26.3 236 40-369 8-253 (585)
6 1l0w_A Aspartyl-tRNA synthetas 100.0 2.1E-56 7.1E-61 468.2 26.8 243 28-369 3-259 (580)
7 1wyd_A Hypothetical aspartyl-t 100.0 8.4E-56 2.9E-60 449.3 27.0 239 28-368 3-246 (429)
8 3bju_A Lysyl-tRNA synthetase; 100.0 6.9E-56 2.3E-60 459.4 26.7 250 24-369 29-291 (521)
9 1n9w_A Aspartyl-tRNA synthetas 100.0 3E-55 1E-59 444.4 22.8 232 29-369 2-239 (422)
10 1eov_A ASPRS, aspartyl-tRNA sy 100.0 8.2E-55 2.8E-59 448.2 25.8 242 27-369 21-293 (487)
11 1e1o_A Lysyl-tRNA synthetase, 100.0 7.9E-55 2.7E-59 449.8 25.3 249 24-369 37-298 (504)
12 1x54_A Asparaginyl-tRNA synthe 100.0 8E-55 2.7E-59 442.7 24.8 239 28-369 3-248 (434)
13 4ex5_A Lysine--tRNA ligase; st 100.0 7.3E-55 2.5E-59 451.5 24.7 248 24-369 59-319 (529)
14 3a74_A Lysyl-tRNA synthetase; 100.0 4.7E-54 1.6E-58 443.0 23.6 249 24-369 29-289 (493)
15 4ah6_A Aspartate--tRNA ligase, 100.0 1.4E-51 4.9E-56 432.9 25.2 242 25-371 8-265 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.5E-33 8.7E-38 277.4 12.7 122 158-371 29-158 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 2.9E-30 1E-34 250.0 12.0 128 151-370 1-139 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.8 2.1E-21 7.2E-26 186.9 3.8 170 115-371 23-206 (290)
19 2rhq_A Phenylalanyl-tRNA synth 98.4 5.4E-07 1.9E-11 86.8 8.7 69 302-371 108-183 (294)
20 3dsq_A Pyrrolysyl-tRNA synthet 98.1 4.1E-06 1.4E-10 80.6 7.8 48 323-371 151-202 (288)
21 1b7y_A Phers, protein (phenyla 98.1 1.2E-05 4.2E-10 79.5 10.3 65 305-371 176-244 (350)
22 1qe0_A Histidyl-tRNA synthetas 97.9 2.7E-05 9.4E-10 77.3 9.2 34 164-197 14-47 (420)
23 2i4l_A Proline-tRNA ligase; al 97.8 6.3E-05 2.2E-09 76.3 9.1 34 163-196 64-97 (458)
24 2dq3_A Seryl-tRNA synthetase; 97.7 0.00012 4E-09 74.1 9.9 35 163-197 169-203 (425)
25 1wu7_A Histidyl-tRNA synthetas 97.7 0.00027 9.4E-09 70.7 12.1 33 164-196 18-50 (434)
26 1z7m_A ATP phosphoribosyltrans 97.6 0.00039 1.3E-08 68.2 12.6 33 164-196 34-66 (344)
27 2j3l_A Prolyl-tRNA synthetase; 97.6 0.00018 6.3E-09 74.6 10.1 35 163-197 44-78 (572)
28 1evl_A Threonyl-tRNA synthetas 97.6 9.2E-05 3.2E-09 73.5 7.3 35 163-197 27-61 (401)
29 1nyr_A Threonyl-tRNA synthetas 97.6 0.00014 4.7E-09 76.9 8.9 35 163-197 268-302 (645)
30 1h4v_B Histidyl-tRNA synthetas 97.6 0.00027 9.1E-09 70.3 10.6 34 164-197 15-48 (421)
31 1htt_A Histidyl-tRNA synthetas 97.6 0.00019 6.4E-09 71.5 9.3 34 164-197 16-49 (423)
32 12as_A Asparagine synthetase; 97.6 0.00021 7.3E-09 69.7 9.1 70 301-370 64-139 (330)
33 1hc7_A Prolyl-tRNA synthetase; 97.6 0.00037 1.3E-08 71.3 11.3 35 163-197 41-75 (477)
34 4e51_A Histidine--tRNA ligase; 97.5 0.00032 1.1E-08 71.5 10.0 34 164-197 44-77 (467)
35 1nj8_A Proline-tRNA synthetase 97.5 0.00037 1.3E-08 70.9 10.0 35 163-197 35-69 (459)
36 3od1_A ATP phosphoribosyltrans 97.5 0.00064 2.2E-08 68.0 11.4 34 164-197 22-55 (400)
37 1nj1_A PROR, proline-tRNA synt 97.4 0.00039 1.3E-08 71.6 9.4 34 163-197 68-101 (501)
38 3net_A Histidyl-tRNA synthetas 97.4 0.0006 2E-08 69.3 10.4 45 164-208 24-74 (465)
39 3kdf_D Replication protein A 3 97.4 0.0014 4.9E-08 55.6 11.2 96 28-131 7-111 (132)
40 3uh0_A Threonyl-tRNA synthetas 97.4 0.00042 1.4E-08 70.7 8.8 35 163-197 61-96 (460)
41 4hvc_A Bifunctional glutamate/ 97.4 0.0006 2.1E-08 70.7 10.1 35 163-197 58-92 (519)
42 2dq0_A Seryl-tRNA synthetase; 97.3 0.00043 1.5E-08 70.6 8.4 35 163-197 190-224 (455)
43 3rac_A Histidine-tRNA ligase; 97.3 0.00063 2.2E-08 67.5 9.3 31 166-196 37-67 (373)
44 4gop_B Putative uncharacterize 97.3 0.0028 9.5E-08 54.1 12.0 95 29-131 11-116 (136)
45 3qne_A Seryl-tRNA synthetase, 97.3 0.00038 1.3E-08 71.6 7.7 35 163-197 182-216 (485)
46 1ses_A Seryl-tRNA synthetase; 97.2 0.0012 4.1E-08 66.6 10.6 34 164-197 164-197 (421)
47 3err_A Fusion protein of micro 97.2 0.001 3.5E-08 69.2 10.2 35 163-197 272-306 (536)
48 1qf6_A THRRS, threonyl-tRNA sy 97.2 0.00053 1.8E-08 72.6 7.7 35 163-197 268-302 (642)
49 3lss_A Seryl-tRNA synthetase; 97.2 0.00049 1.7E-08 70.8 7.2 35 163-197 205-239 (484)
50 4g84_A Histidine--tRNA ligase, 97.2 0.0016 5.6E-08 65.2 10.8 34 163-196 25-58 (464)
51 3a32_A Probable threonyl-tRNA 97.2 0.00061 2.1E-08 69.3 7.4 33 165-197 48-80 (471)
52 3lc0_A Histidyl-tRNA synthetas 97.1 0.0026 8.9E-08 64.7 11.6 34 164-197 41-74 (456)
53 2k50_A Replication factor A re 97.1 0.0024 8.2E-08 52.5 9.3 83 46-132 15-105 (115)
54 3ial_A Prolyl-tRNA synthetase; 97.0 0.0017 5.8E-08 67.3 9.4 35 163-197 52-86 (518)
55 3dm3_A Replication factor A; p 96.9 0.012 4E-07 48.4 11.8 90 28-133 4-101 (105)
56 3kf6_A Protein STN1; OB fold, 96.9 0.0087 3E-07 52.9 11.7 77 48-131 48-128 (159)
57 1wle_A Seryl-tRNA synthetase; 96.9 0.0088 3E-07 61.7 13.4 35 163-197 216-250 (501)
58 3e0e_A Replication protein A; 96.9 0.015 5.2E-07 46.8 12.0 86 30-132 3-96 (97)
59 4g85_A Histidine-tRNA ligase, 96.8 0.0043 1.5E-07 63.6 10.3 34 163-196 78-111 (517)
60 3pco_A Phenylalanyl-tRNA synth 96.8 0.0026 9E-08 62.3 8.0 62 303-367 163-234 (327)
61 3vbb_A Seryl-tRNA synthetase, 96.8 0.003 1E-07 65.5 8.8 34 164-197 199-232 (522)
62 3l4g_A Phenylalanyl-tRNA synth 96.7 0.023 7.9E-07 58.7 14.1 47 323-370 349-397 (508)
63 1ati_A Glycyl-tRNA synthetase; 96.5 0.0037 1.3E-07 64.4 7.4 34 164-197 37-72 (505)
64 2pi2_A Replication protein A 3 96.2 0.035 1.2E-06 52.5 11.4 101 24-132 43-152 (270)
65 2cja_A Seryl-tRNA synthetase; 96.0 0.0046 1.6E-07 64.1 4.8 35 163-197 228-263 (522)
66 1usy_A ATP phosphoribosyltrans 95.9 0.024 8.3E-07 53.6 8.8 45 322-370 71-119 (275)
67 1nnx_A Protein YGIW; structura 95.8 0.049 1.7E-06 45.3 9.1 82 30-130 26-108 (109)
68 3mf2_A BLL0957 protein; aminoa 95.4 0.015 5.1E-07 57.4 5.3 34 164-198 62-95 (346)
69 1o7i_A SSB, SSO2364, single st 95.4 0.081 2.8E-06 43.8 9.1 82 48-138 13-102 (119)
70 3ikl_A DNA polymerase subunit 95.2 0.058 2E-06 55.1 9.3 63 304-367 147-223 (459)
71 1g5h_A Mitochondrial DNA polym 94.8 0.044 1.5E-06 55.7 7.1 64 300-366 133-212 (454)
72 2kbn_A Conserved protein; nucl 94.7 0.45 1.6E-05 38.8 11.8 79 47-133 15-95 (109)
73 2zt5_A Glycyl-tRNA synthetase; 94.7 0.019 6.5E-07 61.4 4.1 35 163-197 98-133 (693)
74 1ynx_A Replication factor-A pr 94.5 0.04 1.4E-06 45.5 4.9 84 48-133 15-110 (114)
75 3kf8_A Protein STN1; OB fold; 94.4 0.36 1.2E-05 44.8 11.5 85 48-132 86-185 (220)
76 3au7_A TIAS, putative uncharac 93.1 0.68 2.3E-05 46.5 11.5 77 45-132 282-362 (402)
77 2k75_A Uncharacterized protein 93.1 0.58 2E-05 38.0 9.3 75 47-133 13-94 (106)
78 3kdf_A Replication protein A 1 91.9 0.82 2.8E-05 38.4 9.0 72 44-132 19-90 (121)
79 1jmc_A Protein (replication pr 91.8 0.26 9E-06 45.1 6.3 95 29-133 8-114 (246)
80 3cmq_A Phenylalanyl-tRNA synth 91.5 0.27 9.3E-06 49.4 6.5 51 300-351 110-161 (415)
81 3fhw_A Primosomal replication 91.4 0.62 2.1E-05 38.8 7.6 52 81-133 49-100 (115)
82 2hpi_A DNA polymerase III alph 90.0 0.34 1.2E-05 54.8 6.2 81 45-132 1040-1124(1220)
83 4gop_A Putative uncharacterize 88.7 0.97 3.3E-05 37.5 6.6 56 44-111 15-70 (114)
84 2pi2_E Replication protein A 1 88.1 4 0.00014 35.2 10.3 71 44-131 40-110 (142)
85 2du3_A O-phosphoseryl-tRNA syn 86.9 0.75 2.6E-05 47.8 5.8 71 301-371 178-257 (534)
86 3k8a_A Putative primosomal rep 86.2 1.5 5.2E-05 35.6 6.3 47 81-129 55-101 (103)
87 3tqy_A Single-stranded DNA-bin 85.7 1.6 5.5E-05 38.0 6.6 52 81-132 58-115 (158)
88 3vdy_A SSB, single-stranded DN 85.6 2.7 9.4E-05 34.2 7.6 52 81-132 52-109 (116)
89 1txy_A Primosomal replication 84.9 2.3 7.7E-05 34.3 6.7 50 81-131 50-102 (104)
90 4gop_C Putative uncharacterize 84.7 0.74 2.5E-05 46.1 4.5 83 48-132 14-108 (444)
91 1j6q_A Cytochrome C maturation 82.6 21 0.0007 30.5 12.0 79 44-138 29-111 (136)
92 3l4g_B Phenylalanyl-tRNA synth 78.9 11 0.00039 39.1 11.0 47 323-370 473-521 (589)
93 2du7_A O-phosphoseryl-tRNA syn 78.5 2.3 7.7E-05 44.3 5.5 47 323-370 219-268 (549)
94 3f2b_A DNA-directed DNA polyme 77.7 10 0.00035 42.4 10.6 89 30-131 8-103 (1041)
95 3mxn_B RECQ-mediated genome in 77.4 11 0.00039 32.7 8.7 74 47-132 58-131 (150)
96 1se8_A Single-strand binding p 76.7 9.2 0.00032 36.6 8.9 83 48-132 130-234 (301)
97 1fyj_A Multifunctional aminoac 76.0 6.8 0.00023 28.4 6.0 45 233-277 3-47 (57)
98 3lgj_A Single-stranded DNA-bin 75.8 11 0.00037 33.2 8.4 86 47-132 23-135 (169)
99 1wjj_A Hypothetical protein F2 75.6 12 0.00041 32.2 8.5 89 28-132 15-120 (145)
100 2fxq_A Single-strand binding p 75.5 7.4 0.00025 36.2 7.7 81 48-132 129-230 (264)
101 2odr_B Phosphoseryl-tRNA synth 74.0 3.6 0.00012 43.6 5.5 49 322-370 225-275 (648)
102 2odr_A Phosphoseryl-tRNA synth 73.6 3.7 0.00013 43.6 5.5 49 322-370 225-275 (665)
103 2odr_D Phosphoseryl-tRNA synth 73.3 3.8 0.00013 43.6 5.5 49 322-370 225-275 (685)
104 2odr_C Phosphoseryl-tRNA synth 72.5 4.1 0.00014 43.5 5.5 49 322-370 225-275 (701)
105 2rhq_B Phenylalanyl-tRNA synth 71.8 26 0.00088 37.9 11.8 29 169-197 495-523 (795)
106 1sr3_A APO-CCME; OB fold, beta 71.3 26 0.00087 30.0 9.3 78 44-137 25-105 (136)
107 2vw9_A Single-stranded DNA bin 69.2 4.2 0.00014 34.2 4.0 52 81-132 51-108 (134)
108 3en2_A Probable primosomal rep 67.6 12 0.00043 30.2 6.3 46 81-127 50-95 (101)
109 1z9f_A Single-strand binding p 66.2 7.5 0.00026 33.6 5.1 52 81-132 65-122 (153)
110 1v1q_A Primosomal replication 64.9 19 0.00064 30.6 7.2 52 81-132 67-120 (134)
111 2djv_A Methionyl-tRNA syntheta 63.8 15 0.00051 28.5 5.8 54 225-278 8-61 (79)
112 4gs3_A Single-stranded DNA-bin 63.3 60 0.002 26.4 10.2 80 47-130 11-106 (107)
113 3koj_A Uncharacterized protein 62.4 11 0.00037 30.8 5.1 78 48-127 12-107 (108)
114 3ull_A DNA binding protein; DN 60.6 9.5 0.00032 31.8 4.5 52 81-132 69-127 (132)
115 3ica_A Phenylalanyl-tRNA synth 60.0 33 0.0011 30.5 8.4 27 170-196 7-33 (213)
116 3pgz_A Single-stranded DNA-bin 59.7 13 0.00044 33.6 5.5 52 81-132 76-138 (193)
117 3ig2_A Phenylalanyl-tRNA synth 56.5 41 0.0014 29.9 8.4 27 170-196 7-33 (213)
118 3f1z_A Putative nucleic acid-b 53.4 35 0.0012 27.7 6.5 70 43-112 45-119 (133)
119 2fxq_A Single-strand binding p 52.3 19 0.00067 33.3 5.6 52 81-132 54-110 (264)
120 3ulp_A Single-strand binding p 51.9 16 0.00054 30.0 4.4 52 81-132 56-120 (124)
121 2kct_A Cytochrome C-type bioge 51.4 74 0.0025 25.3 8.2 76 44-133 5-86 (94)
122 3eiv_A Single-stranded DNA-bin 49.5 24 0.00081 31.9 5.5 48 81-128 55-108 (199)
123 1qvc_A Single stranded DNA bin 48.9 6.7 0.00023 33.4 1.7 53 80-132 54-115 (145)
124 1b7y_B Phers, protein (phenyla 46.1 1.1E+02 0.0037 33.0 11.0 29 168-196 490-518 (785)
125 1se8_A Single-strand binding p 44.7 16 0.00053 35.0 3.7 52 81-132 54-112 (301)
126 2k52_A Uncharacterized protein 44.3 66 0.0023 23.9 6.6 45 52-105 9-55 (80)
127 1d2d_A TRNA synthetase, tRNA l 43.5 16 0.00054 26.8 2.8 40 237-276 4-43 (59)
128 2k4k_A GSP13, general stress p 39.0 86 0.0029 25.8 7.1 49 46-105 7-61 (130)
129 1gm5_A RECG; helicase, replica 38.8 18 0.00062 39.0 3.5 80 45-129 163-246 (780)
130 1xjv_A Protection of telomeres 38.8 1.5E+02 0.0051 27.6 9.6 65 46-111 14-83 (294)
131 3afp_A Single-stranded DNA-bin 36.9 25 0.00086 30.6 3.5 46 81-126 55-106 (168)
132 1qzg_A Protection of telomeres 35.7 2.4E+02 0.0081 25.1 11.1 87 29-123 29-125 (187)
133 2b29_A Replication protein A 7 35.0 1.2E+02 0.004 25.1 7.2 62 67-132 44-108 (123)
134 1eqq_A Single stranded DNA bin 30.3 9.1 0.00031 33.9 -0.5 32 81-112 56-88 (178)
135 2khi_A 30S ribosomal protein S 29.2 90 0.0031 24.9 5.5 50 45-105 29-85 (115)
136 1kl9_A Eukaryotic translation 27.0 1.1E+02 0.0038 26.9 6.1 51 46-105 15-71 (182)
137 2eqs_A ATP-dependent RNA helic 27.0 1.4E+02 0.0046 23.4 6.1 52 46-105 12-70 (103)
138 4dam_A Single-stranded DNA-bin 24.6 39 0.0013 28.1 2.5 47 81-127 65-116 (128)
139 2a19_A EIF-2- alpha, eukaryoti 24.1 57 0.002 28.5 3.6 51 46-105 15-71 (175)
140 1wi5_A RRP5 protein homolog; S 23.5 1E+02 0.0034 24.7 4.7 50 46-105 21-77 (119)
141 2cqo_A Nucleolar protein of 40 23.4 23 0.00079 28.9 0.8 50 46-105 22-77 (119)
142 1xjv_A Protection of telomeres 22.3 3.6E+02 0.012 24.9 9.0 64 46-110 153-242 (294)
143 2khj_A 30S ribosomal protein S 21.6 70 0.0024 25.3 3.4 49 46-105 31-85 (109)
144 2vl6_A SSO MCM N-TER, minichro 21.4 2.1E+02 0.0071 26.1 7.1 20 93-112 222-241 (268)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.9e-59 Score=477.01 Aligned_cols=240 Identities=29% Similarity=0.472 Sum_probs=215.4
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-----hhhccCCCCCcEE
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQLVPTGTCV 102 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-----~~~~~~L~~esvV 102 (373)
+++++.+|. ..++|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.|+.||+|
T Consensus 3 rt~~~~~l~------~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~V 72 (438)
T 3nem_A 3 RTHYSSEIT------EELNGQKVKVAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVV 72 (438)
T ss_dssp CSCCGGGCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCEE
T ss_pred eEEEHHHcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCEE
Confidence 456666665 356899999999999999999 8999999999986 999998764 1245679999999
Q ss_pred EEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC---CChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHH
Q 017368 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (373)
Q Consensus 103 ~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~---~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~f 179 (373)
.|+|+|.+++ ...|++||++++++|||+|. .++|++.+. ++.|+++++||||+|++.++++|++||.|++++|+|
T Consensus 73 ~V~G~v~~~~-~~~~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f 150 (438)
T 3nem_A 73 AVEGVVNFTP-KAKLGFEILPEKIVVLNRAE-TPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDF 150 (438)
T ss_dssp EEEEEEEECT-TSTTSEEEEEEEEEEEECBC-SSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCC-CCCCcEEEEEEEEEEEecCC-CCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 34589999999999999997 678987654 789999999999999999999999999999999999
Q ss_pred HHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhh
Q 017368 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (373)
Q Consensus 180 L~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (373)
|.++||+||+||+|++++||||+++|.+
T Consensus 151 ~~~~gF~EVeTPiL~~~~~eg~~~~f~~---------------------------------------------------- 178 (438)
T 3nem_A 151 FHENGFIEIHTPKIIATATEGGTELFPM---------------------------------------------------- 178 (438)
T ss_dssp HHHTTCEECCCCSEESSCSSCSSSCCEE----------------------------------------------------
T ss_pred HHHCCcEEEeCCEEecCCCCCCccceeE----------------------------------------------------
Confidence 9999999999999999999999998866
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecceecCCCCC
Q 017368 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHT 338 (373)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~fRaE~~~t 338 (373)
+||++++||++|||||+|++ ++|++|||+||||||||+++|
T Consensus 179 --------------------------------------~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t 220 (438)
T 3nem_A 179 --------------------------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438)
T ss_dssp --------------------------------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred --------------------------------------eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCC
Confidence 37899999999999999987 478999999999999999999
Q ss_pred CCCcCccccceeeecCCC-HHHHHHHHHHHHH
Q 017368 339 SRHLAEFWMVEPEMAFSD-LKVRWTYTAHCLV 369 (373)
Q Consensus 339 ~rhl~EF~~le~e~~~~~-~~~~~~~~~~~~~ 369 (373)
+||++||||||+||+|+| ++|+|+++..|++
T Consensus 221 ~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVA 252 (438)
T ss_dssp TTCCSEEEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred cccccceeeeeeeeccCccHHHHHHHHHHHHH
Confidence 999999999999999999 9999994444443
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.3e-59 Score=480.44 Aligned_cols=250 Identities=22% Similarity=0.355 Sum_probs=208.5
Q ss_pred hhhcccccCcceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-hh--hccC
Q 017368 19 DAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-AD--LGQL 95 (373)
Q Consensus 19 ~~~~~~~~~~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-~~--~~~~ 95 (373)
....+++...|+.|+++- .+.|++|+|+|||+++|.+|+ +++|++|||++|. ||||++++. .+ ....
T Consensus 9 ~~~~~~~~~~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~ 78 (456)
T 3m4p_A 9 ATTTPVETPIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARK-TLIFVELRDGSGY--CQCVIFGKELCEPEKVKL 78 (456)
T ss_dssp -------CCCCEECCSTT-------CCCSSEEEEEEEEEEEECCSS-SEEEEEEECSSCE--EEEEEESTTTTCHHHHTT
T ss_pred hcccCCCcceEEEhhhhh-------hcCCCEEEEEEEEEEEecCCC-ceEEEEEEeCCcc--EEEEEecccchhhHHhhc
Confidence 334567888899999883 568999999999999999985 6999999999996 999998732 11 2346
Q ss_pred CCCCcEEEEEEEeeCCCCC--Cc-----cceEEEEeEEEEeecCCCCCCC-CCCCCCChhhhhhccceecCCHHHHHHHH
Q 017368 96 VPTGTCVYVEGMLKNPPEG--TK-----QKIELRVQKVVDVGMVDPAKYP-IPKTKLTLEFLRDRIPFRPRTNTIAAVAR 167 (373)
Q Consensus 96 L~~esvV~V~G~v~~~~~~--~~-----g~vEL~v~~i~VLs~a~~~~~P-i~~k~~s~E~lr~~r~LrlRt~~~~~il~ 167 (373)
|+.||+|.|+|+|.+++.+ +. |++||++++++|+++|. .++| ...+..+.|+++++||||+|++.++++|+
T Consensus 79 l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~-~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr 157 (456)
T 3m4p_A 79 LTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP-IDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQ 157 (456)
T ss_dssp CCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC-GGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC-CCCcccccccCCHHHHhhchHHhhhcHHHHHHHH
Confidence 8999999999999988743 22 89999999999999996 2222 12345688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHH
Q 017368 168 IRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVA 247 (373)
Q Consensus 168 iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (373)
+||.|++++|+||.++||+||+||+|++++||||+++|.+
T Consensus 158 ~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~---------------------------------------- 197 (456)
T 3m4p_A 158 LRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL---------------------------------------- 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEE----------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccc----------------------------------------
Confidence 9999999999999999999999999999999999998754
Q ss_pred hhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHHHhhcCceEEE
Q 017368 248 KLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTF 327 (373)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~vy~~ 327 (373)
+||++++||++|||||+|++++|++|||+|
T Consensus 198 --------------------------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyei 227 (456)
T 3m4p_A 198 --------------------------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCM 227 (456)
T ss_dssp --------------------------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEE
T ss_pred --------------------------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEE
Confidence 589999999999999999988899999999
Q ss_pred ecceecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 328 GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 328 ~p~fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
|||||||+++|+||++||||||+||+|+|++|+|+++..|++
T Consensus 228 g~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 228 LSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVC 269 (456)
T ss_dssp EEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994444443
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=9.2e-59 Score=471.69 Aligned_cols=238 Identities=28% Similarity=0.433 Sum_probs=206.8
Q ss_pred ehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhh-h-ccCCCCCcEEEEEEEe
Q 017368 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-L-GQLVPTGTCVYVEGML 108 (373)
Q Consensus 31 ~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~-~-~~~L~~esvV~V~G~v 108 (373)
.|+++- .+.|++|+|+|||+++|.+|+ +++|++|||++|. ||||++++..+ + ...|+.||+|.|+|+|
T Consensus 2 ~i~~~~-------~~~~~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v 71 (435)
T 2xgt_A 2 KIRDLV-------KHRNERVCIKGWIHRMRRQGK-SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAI 71 (435)
T ss_dssp CGGGGG-------GGTTSEEEEEEEEEEEEECTT-SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEE
T ss_pred chhhhh-------hcCCCEEEEEEEEEEecccCC-CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEE
Confidence 466664 467999999999999999975 6999999999996 99999854311 1 1258999999999999
Q ss_pred eCCCCC--CccceEEEEeEEEEeecCCC-CCCCCCCCCCChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 017368 109 KNPPEG--TKQKIELRVQKVVDVGMVDP-AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 185 (373)
Q Consensus 109 ~~~~~~--~~g~vEL~v~~i~VLs~a~~-~~~Pi~~k~~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~~gF 185 (373)
.+++.+ ++|++||++++++|++++.| ..+|++++..+.|+++++||||+|++.++++|++||.|++++|+||.++||
T Consensus 72 ~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gF 151 (435)
T 2xgt_A 72 KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGY 151 (435)
T ss_dssp EECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 997743 46899999999999998642 236777778899999999999999999999999999999999999999999
Q ss_pred EEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHH
Q 017368 186 LYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTE 265 (373)
Q Consensus 186 iEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (373)
+||+||+|+++++|||+++|.+
T Consensus 152 lEVeTPiL~~s~~eG~~~~F~~---------------------------------------------------------- 173 (435)
T 2xgt_A 152 VEVAPPTLVQTQVEGGSTLFNL---------------------------------------------------------- 173 (435)
T ss_dssp EECCCCSEESCCSSCTTSCCEE----------------------------------------------------------
T ss_pred EEEECCeEeeccCCCchhceee----------------------------------------------------------
Confidence 9999999999999999988865
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHHHhhcCceEEEecceecCCCCCCCCcCcc
Q 017368 266 LTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (373)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~vy~~~p~fRaE~~~t~rhl~EF 345 (373)
+||++++||++|||||+|++++|++|||+||||||||+++|+||++||
T Consensus 174 --------------------------------~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EF 221 (435)
T 2xgt_A 174 --------------------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEY 221 (435)
T ss_dssp --------------------------------EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEE
T ss_pred --------------------------------ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccce
Confidence 489999999999999999988899999999999999999999999999
Q ss_pred ccceeeecCCCHHHHHHHHHHHH
Q 017368 346 WMVEPEMAFSDLKVRWTYTAHCL 368 (373)
Q Consensus 346 ~~le~e~~~~~~~~~~~~~~~~~ 368 (373)
||||+||+|+|++|+|+++..|+
T Consensus 222 T~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 222 AHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHH
T ss_pred eEEEEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999444443
No 4
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-57 Score=470.43 Aligned_cols=236 Identities=27% Similarity=0.390 Sum_probs=191.8
Q ss_pred CCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch------hhhccCCCCCcEEEEEEEeeCCC
Q 017368 39 PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV------ADLGQLVPTGTCVYVEGMLKNPP 112 (373)
Q Consensus 39 ~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~------~~~~~~L~~esvV~V~G~v~~~~ 112 (373)
+++...++|++|+|+|||+++|.+| |++|++|||++|. ||||++.+. .++.+.|+.||+|.|+|+|.+++
T Consensus 54 ~~l~~~~~g~~V~v~Gwv~~~R~~g--kl~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 129 (548)
T 3i7f_A 54 EELVPAMAEKTVTIRARVQAVRGKG--NMVFLFLRKGIYT--CQALVMKSETISKEFVQFCQKISAESICDITGIVKAVE 129 (548)
T ss_dssp GGCSGGGTTCEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECS
T ss_pred hhcchhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCC
Confidence 3344578899999999999999999 8999999999985 999998631 23567799999999999999987
Q ss_pred CC----CccceEEEEeEEEEeecCCCCCCCCCCC----------------------------------------------
Q 017368 113 EG----TKQKIELRVQKVVDVGMVDPAKYPIPKT---------------------------------------------- 142 (373)
Q Consensus 113 ~~----~~g~vEL~v~~i~VLs~a~~~~~Pi~~k---------------------------------------------- 142 (373)
.+ .+|++||++++|+|+|+|. .++|++.+
T Consensus 130 ~~~~~~~~~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 208 (548)
T 3i7f_A 130 KPIEKATQQDVEIHVTSIAVVSLAE-YPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAK 208 (548)
T ss_dssp SCCTTSSSCSEEEEEEEEEEEECCC-BSCSSCSGGGSCCHHHHHHHHHHTTCC---------------------------
T ss_pred cccccCCCCcEEEEEeEEEEEecCC-CCCCCCchhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 42 3689999999999999996 67887631
Q ss_pred ------------CCChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeec
Q 017368 143 ------------KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210 (373)
Q Consensus 143 ------------~~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~ 210 (373)
..+.++++++||||+|++.++++|++||.|++++|+||.++||+||+||+|++++||||+++|.|
T Consensus 209 ~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--- 285 (548)
T 3i7f_A 209 LLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--- 285 (548)
T ss_dssp ----CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------
T ss_pred cccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE---
Confidence 24568888999999999999999999999999999999999999999999999999999998865
Q ss_pred cccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 017368 211 ISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKD 290 (373)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (373)
T Consensus 286 -------------------------------------------------------------------------------- 285 (548)
T 3i7f_A 286 -------------------------------------------------------------------------------- 285 (548)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecceecCCCCCCCCcCccccceeeecCC-CHHHHHHHHHHHH
Q 017368 291 GKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKVRWTYTAHCL 368 (373)
Q Consensus 291 ~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~-~~~~~~~~~~~~~ 368 (373)
+||++++||++|||||+|++ ++|++|||+||||||||+++|+|||+||||||+||+|. +++++|+++..|+
T Consensus 286 -------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 286 -------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp -------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred -------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 47889999999999999875 67899999999999999999999999999999999998 6999999444444
Q ss_pred H
Q 017368 369 V 369 (373)
Q Consensus 369 ~ 369 (373)
+
T Consensus 359 ~ 359 (548)
T 3i7f_A 359 T 359 (548)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=5.3e-57 Score=473.32 Aligned_cols=236 Identities=23% Similarity=0.319 Sum_probs=204.4
Q ss_pred CCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh---hhccCCCCCcEEEEEEEeeCCCCC--
Q 017368 40 DGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEG-- 114 (373)
Q Consensus 40 ~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~---~~~~~L~~esvV~V~G~v~~~~~~-- 114 (373)
++...++|++|+|+|||+++|.+| +++|++|||++|. ||||++.+.. +..+.|+.||+|.|+|+|.+++.+
T Consensus 8 ~l~~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 83 (585)
T 1c0a_A 8 QLRLSHVGQQVTLCGWVNRRRDLG--SLIFIDMRDREGI--VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNI 83 (585)
T ss_dssp GCCGGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTC
T ss_pred HHHHHhCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccc
Confidence 344577899999999999999999 8999999999986 9999976532 245679999999999999998753
Q ss_pred ----CccceEEEEeEEEEeecCCCCCCCCCCCCCChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEec
Q 017368 115 ----TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHT 190 (373)
Q Consensus 115 ----~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~~gFiEV~T 190 (373)
.+|++||++++|+|||+|.+.|+|+.. ..+.+.++++||||+|++.++++|++||.|++++|+||.++||+||+|
T Consensus 84 n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeT 162 (585)
T 1c0a_A 84 NRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162 (585)
T ss_dssp CTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCC
T ss_pred cccCCCccEEEEEeEEEEEeccCCCCCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 479999999999999999755666655 567788889999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHH
Q 017368 191 PIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAK 270 (373)
Q Consensus 191 PiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (373)
|+|++++||||++ |.|+++.
T Consensus 163 PiL~~s~~eGAr~-F~v~~~~----------------------------------------------------------- 182 (585)
T 1c0a_A 163 PMLTKATPEGARD-YLVPSRV----------------------------------------------------------- 182 (585)
T ss_dssp CSSBCCCSSSSCC-CEEECSS-----------------------------------------------------------
T ss_pred CEEecCCCCCCcc-ceecccc-----------------------------------------------------------
Confidence 9999999999988 9886320
Q ss_pred HHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecceecCCCCCCCCcCccccce
Q 017368 271 ENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVE 349 (373)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~fRaE~~~t~rhl~EF~~le 349 (373)
+..+|| ||+||||||+|++ ++|++|||+||||||||+++|+||+ ||||||
T Consensus 183 ------------------------~~~~~y----~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~p-EFT~lE 233 (585)
T 1c0a_A 183 ------------------------HKGKFY----ALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQP-EFTQID 233 (585)
T ss_dssp ------------------------STTCEE----ECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCS-EEEEEE
T ss_pred ------------------------cCCceE----eCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCc-ccceee
Confidence 001233 6999999999985 6789999999999999999999999 999999
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q 017368 350 PEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 350 ~e~~~~~~~~~~~~~~~~~~ 369 (373)
+||+|+|++|+|+++..|++
T Consensus 234 ~e~af~d~~dvm~~~E~li~ 253 (585)
T 1c0a_A 234 VETSFMTAPQVREVMEALVR 253 (585)
T ss_dssp EEEESCCHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHH
Confidence 99999999999994444443
No 6
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=2.1e-56 Score=468.22 Aligned_cols=243 Identities=21% Similarity=0.339 Sum_probs=207.1
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch--hhhccCCCCCcEEEEE
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADLGQLVPTGTCVYVE 105 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~--~~~~~~L~~esvV~V~ 105 (373)
+++++.++ ...+.|++|+|+|||+++|.+| +++|++|||++|. ||||++.+. .+..+.|+.||+|.|+
T Consensus 3 rt~~~~~l------~~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSL------RETHVGEEVVLEGWVNRRRDLG--GLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGC------CGGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEE
T ss_pred cEEEHHHh------HHHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChhHHHHHhcCCCCcEEEEE
Confidence 34555555 4477899999999999999999 8999999999986 999997653 2345679999999999
Q ss_pred EEeeCCCCC----CccceEEEEeEEEEeecCCCCCCCCCC------C-CCChhhhhhccceecCCHHHHHHHHHHHHHHH
Q 017368 106 GMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPK------T-KLTLEFLRDRIPFRPRTNTIAAVARIRNALAY 174 (373)
Q Consensus 106 G~v~~~~~~----~~g~vEL~v~~i~VLs~a~~~~~Pi~~------k-~~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~ 174 (373)
|+|.+++.. .+|++||++++|+|||+|.+.|||+++ + ..+.+.++++||||+|++.++++|++||.|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 999998521 468999999999999999766788865 3 45667777999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccc
Q 017368 175 ATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKA 254 (373)
Q Consensus 175 ~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (373)
++|+||.++||+||+||+|+++++|||++ |.|+++.
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~------------------------------------------- 188 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRH------------------------------------------- 188 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTT-------------------------------------------
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccc-------------------------------------------
Confidence 99999999999999999999999999987 9886310
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecceec
Q 017368 255 GREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRA 333 (373)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~fRa 333 (373)
+..+|| ||+||||||+|++ ++|++|||+|||||||
T Consensus 189 ----------------------------------------~~~~~y----~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 224 (580)
T 1l0w_A 189 ----------------------------------------EPGLFY----ALPQSPQLFKQMLMVAGLDRYFQIARCFRD 224 (580)
T ss_dssp ----------------------------------------STTEEE----ECCSCSHHHHHHHHHTTCSEEEEEEEEECC
T ss_pred ----------------------------------------cCCcee----ECccCHHHHHHHHHHhccCCeEEEeceeeC
Confidence 011232 5999999999985 6789999999999999
Q ss_pred CCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 334 EHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 334 E~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
|+++++||+ ||||||+||+|+|++|+|+++..|++
T Consensus 225 E~~~~~r~p-EFT~lE~e~af~d~~dvm~~~E~li~ 259 (580)
T 1l0w_A 225 EDLRADRQP-DFTQLDLEMSFVEVEDVLELNERLMA 259 (580)
T ss_dssp CCCCSSCCS-EEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCC-CccceeeeecCCCHHHHHHHHHHHHH
Confidence 999999999 99999999999999999994444443
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.4e-56 Score=449.30 Aligned_cols=239 Identities=29% Similarity=0.422 Sum_probs=214.7
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch--hhhccCCCCCcEEEEE
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADLGQLVPTGTCVYVE 105 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~--~~~~~~L~~esvV~V~ 105 (373)
++++|+++. ..+.|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.|+.||+|.|+
T Consensus 3 ~~~~~~~l~------~~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVT------PEYDGKEVIWAGWVHLLRDLG--GKKFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEE
T ss_pred eEEEHHHhh------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChHHHHHHHhCCCCCEEEEE
Confidence 345555554 367899999999999999999 8999999999986 999997653 2344679999999999
Q ss_pred EEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC---CChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 017368 106 GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQK 182 (373)
Q Consensus 106 G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~---~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~ 182 (373)
|+|.+++. .+|++||++++++|||+|. .++|++.+. ++.|+++++||||+|++.+++++++||.|++++|+||.+
T Consensus 73 G~v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~ 150 (429)
T 1wyd_A 73 GIVKADKR-APRGIELHAEEITLLSKAK-APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK 150 (429)
T ss_dssp EEEEECSS-SGGGEEEEEEEEEEEECCC-SSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCC-CCccEEEEEeEEEEeccCC-CCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999973 4689999999999999995 679987765 789999999999999999999999999999999999999
Q ss_pred CCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhh
Q 017368 183 QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISAS 262 (373)
Q Consensus 183 ~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
+||+||+||+|+++++||++++|.+
T Consensus 151 ~gF~eV~TP~l~~~~~e~~~~~f~~------------------------------------------------------- 175 (429)
T 1wyd_A 151 EGFIEIFTPKIIASATEGGAQLFPV------------------------------------------------------- 175 (429)
T ss_dssp TTCEECCCCSEESSCSSTTCCCCEE-------------------------------------------------------
T ss_pred CCCEEEECCEEEeeCCCCCceeEEE-------------------------------------------------------
Confidence 9999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHHHhhcCceEEEecceecCCCCCCCCc
Q 017368 263 VTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHL 342 (373)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~vy~~~p~fRaE~~~t~rhl 342 (373)
+||++++||++|||||+|+++++++|||+||||||+|++++.||+
T Consensus 176 -----------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~ 220 (429)
T 1wyd_A 176 -----------------------------------IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHL 220 (429)
T ss_dssp -----------------------------------EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCC
T ss_pred -----------------------------------ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCcccccc
Confidence 378899999999999999988899999999999999999999999
Q ss_pred CccccceeeecCCCHHHHHHHHHHHH
Q 017368 343 AEFWMVEPEMAFSDLKVRWTYTAHCL 368 (373)
Q Consensus 343 ~EF~~le~e~~~~~~~~~~~~~~~~~ 368 (373)
+||||+|+||+|.++.++|+++..++
T Consensus 221 pEFtqle~e~~~~~~~dlm~~~e~ll 246 (429)
T 1wyd_A 221 AEFISMDVEMAFADYNDVMQLLEKIL 246 (429)
T ss_dssp SEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ceeeEeeeeecCCCHHHHHHHHHHHH
Confidence 99999999999999999999444433
No 8
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6.9e-56 Score=459.36 Aligned_cols=250 Identities=18% Similarity=0.245 Sum_probs=212.6
Q ss_pred cccCcceehhhhhcCCC-C--CCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh----hh---c
Q 017368 24 HQFSDRVLIKSILTRPD-G--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DL---G 93 (373)
Q Consensus 24 ~~~~~r~~Ikdi~~~~~-l--~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~----~~---~ 93 (373)
..|..++++.++....+ + +....|++|+|+|||+++|.+|+ |++|++|||++|. ||||++++.. .+ .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gk-k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 105 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGG-KLIFYDLRGEGVK--LQVMANSRNYKSEEEFIHIN 105 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSS-SEEEEEEEETTEE--EEEEEEGGGSSCHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCC-CcEEEEEEECCEE--EEEEEECCccCCHHHHHHHH
Confidence 56888899999854111 1 23445889999999999999997 6999999999985 9999976431 22 3
Q ss_pred cCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCC-CCChhhhhhccceecC-CHHHHHHHHHHHH
Q 017368 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAAVARIRNA 171 (373)
Q Consensus 94 ~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k-~~s~E~lr~~r~LrlR-t~~~~~il~iRS~ 171 (373)
+.|+.||+|.|+|+|.+++ +|++||++++|++|++|. .++|+... ..+.|+++++||||+| ++..+++|++||.
T Consensus 106 ~~l~~gd~V~V~G~v~~t~---~ge~ei~~~~i~~l~~~~-~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~ 181 (521)
T 3bju_A 106 NKLRRGDIIGVQGNPGKTK---KGELSIIPYEITLLSPCL-HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 181 (521)
T ss_dssp HHCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCC-SCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEEEEEecC---CCCEEEEEeEEEEeecCC-CCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHH
Confidence 5689999999999999987 689999999999999997 67886543 3578999999999998 8999999999999
Q ss_pred HHHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhc
Q 017368 172 LAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS 251 (373)
Q Consensus 172 i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
|++++|+||.++||+||+||+|+++.+|+++++|.++
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~------------------------------------------- 218 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITY------------------------------------------- 218 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEE-------------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEeCceeeccCCCccccceeee-------------------------------------------
Confidence 9999999999999999999999976544456889763
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecc
Q 017368 252 DKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPT 330 (373)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~ 330 (373)
.+||++++||++|||||+|++ ++|++|||+||||
T Consensus 219 ---------------------------------------------~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~ 253 (521)
T 3bju_A 219 ---------------------------------------------HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQ 253 (521)
T ss_dssp ---------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEE
T ss_pred ---------------------------------------------cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcc
Confidence 147899999999999999975 6679999999999
Q ss_pred eecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 331 fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
||||+++| ||++||||||+||+|+|++|+|+++..|++
T Consensus 254 FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~ 291 (521)
T 3bju_A 254 FRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVS 291 (521)
T ss_dssp ECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred eeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHH
Confidence 99999998 899999999999999999999994444443
No 9
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=3e-55 Score=444.43 Aligned_cols=232 Identities=26% Similarity=0.408 Sum_probs=162.4
Q ss_pred ceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCC-CCcEEEEEEE
Q 017368 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP-TGTCVYVEGM 107 (373)
Q Consensus 29 r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~-~esvV~V~G~ 107 (373)
+++|+++. ++.|++|+|+|||+++|.+| |++|++|||++|. ||||+++ +.|+ .||+|.|+|+
T Consensus 2 ~~~~~~l~-------~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~------~~l~~~~~~v~v~G~ 64 (422)
T 1n9w_A 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLG--RIQFLLLRDRSGV--VQVVTGG------LKLPLPESALRVRGL 64 (422)
T ss_dssp BCCGGGGG-------GCTTSEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEES------CCCCCTTCEEEEEEE
T ss_pred eEEHHHHH-------hcCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEEc------cccCCCCCEEEEEEE
Confidence 45667664 46799999999999999999 8999999999986 9999976 4589 9999999999
Q ss_pred eeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC----CChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 017368 108 LKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK----LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (373)
Q Consensus 108 v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~----~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~~ 183 (373)
|.+++. .+|++||++++++|||+|. .++|++.+. ++.|+++++||||+|++.+++++++||.|++++|+||.++
T Consensus 65 v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 65 VVENAK-APGGLEVQAKEVEVLSPAL-EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEECTT-STTSEEEEEEEEEEEECCC-SCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCC-CCccEEEEEeEEEEeccCC-cCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999973 4689999999999999996 679987765 7889999999999999999999999999999999999999
Q ss_pred CcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhH
Q 017368 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (373)
Q Consensus 184 gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (373)
||+||+||+|+.+++||++++|.+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~-------------------------------------------------------- 166 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV-------------------------------------------------------- 166 (422)
T ss_dssp TCEECCCC------------------------------------------------------------------------
T ss_pred CCEEEECCEEEEeCCCCCceeEEE--------------------------------------------------------
Confidence 999999999999999999998865
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHHHhhcCceEEEecceecCCCCCCCCcC
Q 017368 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (373)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~vy~~~p~fRaE~~~t~rhl~ 343 (373)
+||++++||++|||||+|+++++++|||+||||||+|++++.||++
T Consensus 167 ----------------------------------~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~p 212 (422)
T 1n9w_A 167 ----------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLN 212 (422)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHSEEEEEEEC-------------
T ss_pred ----------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccc
Confidence 3678899999999999999888899999999999999999999999
Q ss_pred ccccceeeecCC-CHHHHHHHHHHHHH
Q 017368 344 EFWMVEPEMAFS-DLKVRWTYTAHCLV 369 (373)
Q Consensus 344 EF~~le~e~~~~-~~~~~~~~~~~~~~ 369 (373)
||||+|+|++|+ |+.++|+++..|++
T Consensus 213 EFtqle~e~~~~~d~~dlm~l~e~ll~ 239 (422)
T 1n9w_A 213 EYLSLDVEMGFIADEEDLMRLEEALLA 239 (422)
T ss_dssp CCEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred eeEEeeeeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999 99999994444443
No 10
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=8.2e-55 Score=448.18 Aligned_cols=242 Identities=27% Similarity=0.397 Sum_probs=211.0
Q ss_pred CcceehhhhhcCCCCCCC-CCCcEEEEEEEEEeeecCCCcee-EEEEEEcCCCCceEEEEEeCc----h----hhhccCC
Q 017368 27 SDRVLIKSILTRPDGGAG-LAGRQVRVGGWVKTGREQGKGSF-AFLEVNDGSCPANLQVIVDKD----V----ADLGQLV 96 (373)
Q Consensus 27 ~~r~~Ikdi~~~~~l~~~-~igk~V~V~GWV~siR~~Gk~kl-~FIdLRDgsg~~~IQvVv~~~----~----~~~~~~L 96 (373)
..+++|+++. .. ++|++|+|+|||+++|.+| |+ +|++|||++|. ||||++++ . .++.+.|
T Consensus 21 ~~~~~~~~l~------~~~~~g~~V~v~GwV~~~R~~g--~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~~~~l 90 (487)
T 1eov_A 21 QKRVKFVDLD------EAKDSDKEVLFRARVHNTRQQG--ATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGSL 90 (487)
T ss_dssp CCCCCGGGCC------TTTTTTCEEEEEEEEEEEEECS--SSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTTC
T ss_pred cceeEHHHhc------ccccCCCEEEEEEEEEEeeccC--CccEEEEEEECCcc--EEEEEeccccccccHHHHHHHhcC
Confidence 3455666664 24 6899999999999999999 66 99999999985 99999754 1 1245679
Q ss_pred CCCcEEEEEEEeeCCCCC----CccceEEEEeEEEEeecCCCCCCCCCCC---------------CCChhhhhhccceec
Q 017368 97 PTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT---------------KLTLEFLRDRIPFRP 157 (373)
Q Consensus 97 ~~esvV~V~G~v~~~~~~----~~g~vEL~v~~i~VLs~a~~~~~Pi~~k---------------~~s~E~lr~~r~Lrl 157 (373)
+.||+|.|+|+|.+++.+ ++|++||++++|+|||+|. .++|++.+ ..+.|+++++||||+
T Consensus 91 ~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~-~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdL 169 (487)
T 1eov_A 91 NLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP-EALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDL 169 (487)
T ss_dssp CTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCC-SSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHT
T ss_pred CCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeeccc-ccCCcchhhcccccccccccccccCChhhhhhcceeec
Confidence 999999999999999742 3589999999999999997 57888542 257899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHH
Q 017368 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKL 237 (373)
Q Consensus 158 Rt~~~~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (373)
|++.+++++++||.|++++|+||.++||+||+||+|+++.+||++++|.++
T Consensus 170 r~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~----------------------------- 220 (487)
T 1eov_A 170 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT----------------------------- 220 (487)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE-----------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceec-----------------------------
Confidence 999999999999999999999999999999999999999999999998773
Q ss_pred HHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH
Q 017368 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317 (373)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~ 317 (373)
||++++||+||||||+|++
T Consensus 221 -------------------------------------------------------------~~~~~~~L~~Spql~~k~l 239 (487)
T 1eov_A 221 -------------------------------------------------------------YFKGKAYLAQSPQFNKQQL 239 (487)
T ss_dssp -------------------------------------------------------------ETTEEEEECSCTHHHHHHH
T ss_pred -------------------------------------------------------------cCCccEEcccChHHHHHHH
Confidence 6788999999999999986
Q ss_pred -HhhcCceEEEecceecCCCCCCCCcCccccceeeecCC-CHHHHHHHHHHHHH
Q 017368 318 -ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKVRWTYTAHCLV 369 (373)
Q Consensus 318 -~~~~~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~-~~~~~~~~~~~~~~ 369 (373)
+.+++|||+||||||+|+++|.||++||||||+||+|. +++++|+++..|++
T Consensus 240 ~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~ 293 (487)
T 1eov_A 240 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293 (487)
T ss_dssp HHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred HhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999997 59999994444443
No 11
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=7.9e-55 Score=449.75 Aligned_cols=249 Identities=17% Similarity=0.204 Sum_probs=205.5
Q ss_pred cccCcceehhhhhcCCC-CCC---CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-----hh-hc
Q 017368 24 HQFSDRVLIKSILTRPD-GGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----AD-LG 93 (373)
Q Consensus 24 ~~~~~r~~Ikdi~~~~~-l~~---~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-----~~-~~ 93 (373)
..|.+++++.++..... +.. ...|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+ ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~ 112 (504)
T 1e1o_A 37 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARDSLPEGVYNDQF 112 (504)
T ss_dssp CCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSSTTHHHHTG
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEECCcCCHHHHHHHH
Confidence 45778888888875211 110 00188999999999999999 8999999999985 999998653 12 34
Q ss_pred cCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC-CChhhhhhccceecC-CHHHHHHHHHHHH
Q 017368 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK-LTLEFLRDRIPFRPR-TNTIAAVARIRNA 171 (373)
Q Consensus 94 ~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~-~s~E~lr~~r~LrlR-t~~~~~il~iRS~ 171 (373)
+.|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|..... .+.|.++++||||+| ++.++++|++||.
T Consensus 113 ~~l~~g~~V~V~G~v~~~~---~ge~ei~~~~i~vl~~a~-~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~ 188 (504)
T 1e1o_A 113 KKWDLGDIIGARGTLFKTQ---TGELSIHCTELRLLTKAL-RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 188 (504)
T ss_dssp GGCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS-SCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEEEEEecC---CceEEEEEEEEEEecccC-CCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHH
Confidence 6799999999999999987 689999999999999996 556632211 246888999999995 9999999999999
Q ss_pred HHHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhc
Q 017368 172 LAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS 251 (373)
Q Consensus 172 i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
|++++|+||.++||+||+||+|+++.+|+++++|.++
T Consensus 189 i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~------------------------------------------- 225 (504)
T 1e1o_A 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH------------------------------------------- 225 (504)
T ss_dssp HHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-------------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-------------------------------------------
Confidence 9999999999999999999999965433345789774
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecc
Q 017368 252 DKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPT 330 (373)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~ 330 (373)
.++|++++||++|||||+|++ ++|++|||+||||
T Consensus 226 ---------------------------------------------~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~ 260 (504)
T 1e1o_A 226 ---------------------------------------------HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRN 260 (504)
T ss_dssp ---------------------------------------------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEE
T ss_pred ---------------------------------------------cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEccc
Confidence 147899999999999999986 5689999999999
Q ss_pred eecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 331 fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
||||++++ ||++||||||+||+|+|++|+|+++..|++
T Consensus 261 FR~E~~~~-rH~pEFt~lE~e~af~d~~dlm~l~E~li~ 298 (504)
T 1e1o_A 261 FRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFR 298 (504)
T ss_dssp ECCCCCCC--CCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccCCCCCc-cccCceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 99999986 999999999999999999999994444443
No 12
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=8e-55 Score=442.67 Aligned_cols=239 Identities=30% Similarity=0.510 Sum_probs=214.8
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-----hhhccCCCCCcEE
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQLVPTGTCV 102 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-----~~~~~~L~~esvV 102 (373)
++++|+++.. .+.|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.|+.||+|
T Consensus 3 ~~~~~~~l~~------~~~~~~V~v~G~v~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVG--KKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSV 72 (434)
T ss_dssp CCCCGGGCCG------GGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHTCCTTCEE
T ss_pred eEEEHHHhhH------HhCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 4667777753 57899999999999999999 8999999999986 999997532 1234679999999
Q ss_pred EEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCC--CCCCCChhhhhhccceecCCHHHHHHHHHHHHHHHHHHHHH
Q 017368 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI--PKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (373)
Q Consensus 103 ~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi--~~k~~s~E~lr~~r~LrlRt~~~~~il~iRS~i~~~iR~fL 180 (373)
.|+|+|.+++. .+|++||++++++|||+| .++|+ +.+.++.|+++++||||+|++.+++++++||.|++++|+||
T Consensus 73 ~v~G~v~~~~~-~~~~~el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f 149 (434)
T 1x54_A 73 IVEGIVKADER-APGGAEVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWL 149 (434)
T ss_dssp EEEEEEEECTT-SGGGEEEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CCccEEEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999973 468999999999999999 56888 66678999999999999999999999999999999999999
Q ss_pred HhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhh
Q 017368 181 QKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAIS 260 (373)
Q Consensus 181 ~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (373)
.++||+||+||+|+.+++||++++|.+
T Consensus 150 ~~~gF~eVeTP~l~~~~~e~~~~~f~~----------------------------------------------------- 176 (434)
T 1x54_A 150 LKDGWHEVFPPILVTGAVEGGATLFKL----------------------------------------------------- 176 (434)
T ss_dssp HHTTCEECCCCSEESCCSSCGGGCCEE-----------------------------------------------------
T ss_pred HHCCCEEEeCcEEEeecCCCCceeEEE-----------------------------------------------------
Confidence 999999999999999999999998866
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHHHhhcCceEEEecceecCCCCCCC
Q 017368 261 ASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSR 340 (373)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~vy~~~p~fRaE~~~t~r 340 (373)
+||++++||++|||||+|+++++++|||+||||||+|++++.|
T Consensus 177 -------------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~R 219 (434)
T 1x54_A 177 -------------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRR 219 (434)
T ss_dssp -------------------------------------EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSS
T ss_pred -------------------------------------eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcc
Confidence 4788999999999999999888999999999999999999999
Q ss_pred CcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 341 HLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 341 hl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
|++||||+|+||+|.++.++|+++..+++
T Consensus 220 H~pEFtqle~e~~~~~~~dlm~~~e~ll~ 248 (434)
T 1x54_A 220 HLTEFWHLELEAAWMDLWDIMKVEEELVS 248 (434)
T ss_dssp CCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred cccEEEEeeEEEcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999994444433
No 13
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.3e-55 Score=451.52 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=206.1
Q ss_pred cccCcceehhhhhcCCC-CCCC---CCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-----hhhcc
Q 017368 24 HQFSDRVLIKSILTRPD-GGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQ 94 (373)
Q Consensus 24 ~~~~~r~~Ikdi~~~~~-l~~~---~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-----~~~~~ 94 (373)
..|.+++++.++....+ +... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G--k~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~~ 134 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG--KASFATVQDGSGQ--IQFFVTPADVGAETYDAFK 134 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEECSSCE--EEEEECHHHHCHHHHHHHH
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC--CeEEEEEEeCCee--EEEEEECCcCCHHHHHHHh
Confidence 46778888888875222 1110 1278999999999999999 8999999999985 999998753 12346
Q ss_pred CCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC-CChhhhhhccceecC-CHHHHHHHHHHHHH
Q 017368 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK-LTLEFLRDRIPFRPR-TNTIAAVARIRNAL 172 (373)
Q Consensus 95 ~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~-~s~E~lr~~r~LrlR-t~~~~~il~iRS~i 172 (373)
.|+.||+|.|+|.|.+++ +|++||++++|+|||+|. .|+|..... .+.|+++++||||+| ++.++++|++||.|
T Consensus 135 ~l~~gd~V~V~G~v~~t~---~gelel~~~~i~vLs~a~-~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i 210 (529)
T 4ex5_A 135 KWDLGDIVAARGVLFRTN---KGELSVKCTQLRLLAKAL-RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210 (529)
T ss_dssp TCCTTCEEEEEEEEEECT---TSCEEEEEEEEEEEECCS-SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEEcC---CCcEEEEEEEEEEEecCC-CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 799999999999999987 689999999999999996 455543222 256889999999997 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEecCeeecCCCCCC-CcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhc
Q 017368 173 AYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS 251 (373)
Q Consensus 173 ~~~iR~fL~~~gFiEV~TPiLt~~~~EGa-~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
++++|+||.++||+||+||+|+++ ++|| +++|.+.
T Consensus 211 ~~~iR~ff~~~gFlEVeTPiL~~~-~gGA~a~pF~t~------------------------------------------- 246 (529)
T 4ex5_A 211 IASIRKFMGDADFMEVETPMLHPI-PGGAAAKPFVTH------------------------------------------- 246 (529)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEEE-------------------------------------------
T ss_pred HHHHHHHHHHCCCEEEeCCeeecc-CCCCcccccccc-------------------------------------------
Confidence 999999999999999999999965 4454 4778652
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecc
Q 017368 252 DKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPT 330 (373)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~ 330 (373)
.++|+.++||++|||||+|++ ++|++|||+||||
T Consensus 247 ---------------------------------------------~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~ 281 (529)
T 4ex5_A 247 ---------------------------------------------HNALDMEMFLRIAPELYLKRLIVGGFERVFEINRN 281 (529)
T ss_dssp ---------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEE
T ss_pred ---------------------------------------------cccCCcceecccCHHHHHHHHHhcCCCcEEEeehh
Confidence 247899999999999999975 6899999999999
Q ss_pred eecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 331 fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
||||+++ .||++||||||+||+|+|++|+|+++..|++
T Consensus 282 FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~ 319 (529)
T 4ex5_A 282 FRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIR 319 (529)
T ss_dssp ECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred eecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 9999998 5999999999999999999999995444444
No 14
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=4.7e-54 Score=443.03 Aligned_cols=249 Identities=18% Similarity=0.234 Sum_probs=207.9
Q ss_pred cccCcceehhhhhcCCC-CCC---CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-----hhhcc
Q 017368 24 HQFSDRVLIKSILTRPD-GGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQ 94 (373)
Q Consensus 24 ~~~~~r~~Ikdi~~~~~-l~~---~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-----~~~~~ 94 (373)
..|.+++++.++..... +.. ...|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~ 104 (493)
T 3a74_A 29 KRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG--KAGFAHIQDVTGQ--IQIYVRQDDVGEQQYELFK 104 (493)
T ss_dssp CCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEEHHHHHHHHHHHHH
T ss_pred CCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC--CcEEEEEEECCEe--EEEEEECCcCCHHHHHHHh
Confidence 46788888988875211 110 00288999999999999999 8999999999985 999997652 12346
Q ss_pred CCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecCCCCCCCCCCCC-CChhhhhhccceecC-CHHHHHHHHHHHHH
Q 017368 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK-LTLEFLRDRIPFRPR-TNTIAAVARIRNAL 172 (373)
Q Consensus 95 ~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~-~s~E~lr~~r~LrlR-t~~~~~il~iRS~i 172 (373)
.|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|..... .+.|.++++||||+| ++.++++|++||.|
T Consensus 105 ~l~~g~~v~V~G~v~~~~---~ge~ei~~~~i~vl~~~~-~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i 180 (493)
T 3a74_A 105 ISDLGDIVGVRGTMFKTK---VGELSIKVSSYEFLTKAL-RPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLI 180 (493)
T ss_dssp HCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS-SCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEeCC---CCcEEEEEEEEEEccccc-CCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHH
Confidence 699999999999999987 589999999999999996 556632211 347889999999995 99999999999999
Q ss_pred HHHHHHHHHhCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcc
Q 017368 173 AYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSD 252 (373)
Q Consensus 173 ~~~iR~fL~~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (373)
++++|+||.++||+||+||+|+++.+|+++++|.++
T Consensus 181 ~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-------------------------------------------- 216 (493)
T 3a74_A 181 IQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-------------------------------------------- 216 (493)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE--------------------------------------------
T ss_pred HHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec--------------------------------------------
Confidence 999999999999999999999976544456889773
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHHH-HhhcCceEEEecce
Q 017368 253 KAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTF 331 (373)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~vy~~~p~f 331 (373)
.++|++++||++|||||+|++ ++|++|||+|||||
T Consensus 217 --------------------------------------------~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~F 252 (493)
T 3a74_A 217 --------------------------------------------HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVF 252 (493)
T ss_dssp --------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred --------------------------------------------ccCCCceeEEecCHHHHHHHHhhcccCceEEECccc
Confidence 147899999999999999985 67899999999999
Q ss_pred ecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHH
Q 017368 332 RAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLV 369 (373)
Q Consensus 332 RaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~ 369 (373)
|||++++ ||++||||||+||+|+|++|+|+++..|++
T Consensus 253 R~E~~~~-rH~pEFT~lE~e~af~d~~dlm~l~E~ll~ 289 (493)
T 3a74_A 253 RNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIA 289 (493)
T ss_dssp CCCCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred cCCCCCc-ccCCceeEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999987 999999999999999999999994444443
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=432.90 Aligned_cols=242 Identities=21% Similarity=0.283 Sum_probs=204.6
Q ss_pred ccCcceehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh-----hhccCCCCC
Q 017368 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTG 99 (373)
Q Consensus 25 ~~~~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~-----~~~~~L~~e 99 (373)
++.+++++.++ ...+.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. ++.+.|+.|
T Consensus 8 ~~~rt~~~~~l------~~~~~g~~V~l~GwV~~~R~~-----~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~l~~e 74 (617)
T 4ah6_A 8 FVVRTNTCGEL------RSSHLGQEVTLCGWIQYRRQN-----TFLVLRDFDGL--VQVIIPQDESAASVKKILCEAPVE 74 (617)
T ss_dssp SSSCSSCGGGC------CGGGTTCEEEEEEEECCCCTT-----TEEEEECSSCE--EEEECCCSSSSHHHHHHHHHCCSS
T ss_pred cccCceEHHHh------HHHhCCCEEEEEEEeeeecCe-----EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhcCCCC
Confidence 44555555554 457889999999999999963 39999999986 9999987532 245679999
Q ss_pred cEEEEEEEeeCCCCC------CccceEEEEeEEEEeecCCCCCCCCCCCCC---ChhhhhhccceecCCHHHHHHHHHHH
Q 017368 100 TCVYVEGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPRTNTIAAVARIRN 170 (373)
Q Consensus 100 svV~V~G~v~~~~~~------~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~~---s~E~lr~~r~LrlRt~~~~~il~iRS 170 (373)
|+|.|+|+|.+++.+ .+|++||++++|+|||+|. ++|++.+++ +.+.++++||||+|++.++++|++||
T Consensus 75 ~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs 152 (617)
T 4ah6_A 75 SVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRS 152 (617)
T ss_dssp CEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred CEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHHH
Confidence 999999999987643 3589999999999999996 678765443 45677799999999999999999999
Q ss_pred HHHHHHHHHHH-hCCcEEEecCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhh
Q 017368 171 ALAYATHTFLQ-KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (373)
Q Consensus 171 ~i~~~iR~fL~-~~gFiEV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (373)
.|++++|+||. ++||+||+||+|++++||||++ |.|+++
T Consensus 153 ~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~~--------------------------------------- 192 (617)
T 4ah6_A 153 QMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPSR--------------------------------------- 192 (617)
T ss_dssp HHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEECS---------------------------------------
T ss_pred HHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceeccc---------------------------------------
Confidence 99999999996 7999999999999999999876 988521
Q ss_pred hcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccceeeccHHHHHHH-HHhhcCceEEEe
Q 017368 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFG 328 (373)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~vy~~~ 328 (373)
.+++.+||+||||||+|+ +++|++|||+||
T Consensus 193 -------------------------------------------------~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~ 223 (617)
T 4ah6_A 193 -------------------------------------------------EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVA 223 (617)
T ss_dssp -------------------------------------------------STTCEEECCSSTTHHHHHHHHTSCSEEEEEE
T ss_pred -------------------------------------------------cCCcccccccCHHHHHHHHHhcccCcEEEEE
Confidence 235567999999999998 468899999999
Q ss_pred cceecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHHhc
Q 017368 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLVFE 371 (373)
Q Consensus 329 p~fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~~~ 371 (373)
||||||+++|+| ++||||||+||+|+|++|+|+++..|++++
T Consensus 224 ~~FR~E~~~t~r-~pEFt~lE~e~af~d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 224 RCYRDEGSRPDR-QPEFTQIDIEMSFVDQTGIQSLIEGLLQYS 265 (617)
T ss_dssp EEECCCSSCSSS-CSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred hheecccCCCCc-CcceecceeeecCCCHHHHHHHHHHHHHHH
Confidence 999999999865 899999999999999999999777766653
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.5e-33 Score=277.36 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCCCCCC-CcceeeeeccccchhhhhhhhCCCCCChhhHHHHH
Q 017368 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEAAK 236 (373)
Q Consensus 158 Rt~~~~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~~EGa-~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (373)
|++ .+++|++||.|++++|+||.++||+||+||+|++++++|+ +++|.+
T Consensus 29 ~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~----------------------------- 78 (345)
T 3a5y_A 29 PSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET----------------------------- 78 (345)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE-----------------------------
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE-----------------------------
Confidence 555 7899999999999999999999999999999999988754 677766
Q ss_pred HHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccC------ccceeeccH
Q 017368 237 LVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFA------RQAFLTVSG 310 (373)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~------~~~~L~~S~ 310 (373)
+||+ .++||+|||
T Consensus 79 -------------------------------------------------------------~~~~~~~~~~~~~yL~~Sp 97 (345)
T 3a5y_A 79 -------------------------------------------------------------RFVGPGHSQGMNLWLMTSP 97 (345)
T ss_dssp -------------------------------------------------------------EECCSTTSCCEEEEECSCS
T ss_pred -------------------------------------------------------------EecCcccccCCCEeecCCH
Confidence 3443 789999999
Q ss_pred HHHHHH-HHhhcCceEEEecceecCCCCCCCCcCccccceeeecCCCHHHHHHHHHHHHHhc
Q 017368 311 QLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLVFE 371 (373)
Q Consensus 311 ql~~e~-~~~~~~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~~~ 371 (373)
|||+|+ +++|++|||+||||||||++ +.||++||||||+||+|+|++++|+++..|++++
T Consensus 98 ql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 98 EYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHH
Confidence 999995 68899999999999999999 8999999999999999999999999666666553
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.96 E-value=2.9e-30 Score=250.05 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=113.5
Q ss_pred hccceecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC--------CCCCCCcceeeeeccccchhhhhhhh
Q 017368 151 DRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS--------DCEGAGEMFQVTTLISDADKLEKELI 222 (373)
Q Consensus 151 ~~r~LrlRt~~~~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~--------~~EGa~e~F~v~~~~~~~~~~~~~~~ 222 (373)
+||+|++|++ .++++++|+.|++.+|+||.++||+||+||+|... .+|| +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4789999999 99999999999999999999999999999999998 6666 555543
Q ss_pred CCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCc
Q 017368 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFAR 302 (373)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 302 (373)
+||++
T Consensus 64 ---------------------------------------------------------------------------~~~~~ 68 (294)
T 1nnh_A 64 ---------------------------------------------------------------------------EIYGV 68 (294)
T ss_dssp ---------------------------------------------------------------------------EETTE
T ss_pred ---------------------------------------------------------------------------EcCCC
Confidence 47888
Q ss_pred cceeeccHHHHHHHHHh-hcCceEEEecceecCC--CCCCCCcCccccceeeecCCCHHHHHHHHHHHHHh
Q 017368 303 QAFLTVSGQLQVETYAC-AVSNVYTFGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLVF 370 (373)
Q Consensus 303 ~~~L~~S~ql~~e~~~~-~~~~vy~~~p~fRaE~--~~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~~ 370 (373)
.+||++|||+|+|+++. +++|||+||||||+|+ ++|.||++||||+|+|++|.++.++|+++..+++.
T Consensus 69 ~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~ 139 (294)
T 1nnh_A 69 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYG 139 (294)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred CEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999754 5999999999999999 99899999999999999999999999955544443
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.82 E-value=2.1e-21 Score=186.93 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=127.2
Q ss_pred CccceEEEEeEEEEeecCCCCCCCCCCCCCChhhhhhccceecCCHHHHHHHHH-----HHHHHHHHHHHHHhCCcEEEe
Q 017368 115 TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARI-----RNALAYATHTFLQKQGFLYIH 189 (373)
Q Consensus 115 ~~g~vEL~v~~i~VLs~a~~~~~Pi~~k~~s~E~lr~~r~LrlRt~~~~~il~i-----RS~i~~~iR~fL~~~gFiEV~ 189 (373)
++|++||++++|+||++|. .++|++.++. ..++++||||+|++.+++++++ ++.+...+|++|...||.||.
T Consensus 23 ~~~~~ei~~~~~~vl~~a~-~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~ 99 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPK-DEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIK 99 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTT-CC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCceEEEEhhhhhhhccCC-CCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999999997 5688876554 3377899999999999999999 999999999999999999999
Q ss_pred cCeeecCCCCCCCcceeeeeccccchhhhhhhhCCCCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHH
Q 017368 190 TPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKA 269 (373)
Q Consensus 190 TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (373)
||+|++.++. +.|.++ .
T Consensus 100 Tp~l~~~~~~---~~~~~~-----------------~------------------------------------------- 116 (290)
T 3qtc_A 100 SPILIPLEYI---ERMGID-----------------N------------------------------------------- 116 (290)
T ss_dssp CCSEEETHHH---HHTTCC-----------------T-------------------------------------------
T ss_pred CCceeeHHHH---HhcCCC-----------------c-------------------------------------------
Confidence 9999876421 101000 0
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCccccccccCccceee--ccHHHHHHHHH-----hhcCceEEEecceecCCCCCCCCc
Q 017368 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLT--VSGQLQVETYA-----CAVSNVYTFGPTFRAEHSHTSRHL 342 (373)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~--~S~ql~~e~~~-----~~~~~vy~~~p~fRaE~~~t~rhl 342 (373)
+-|. .-...+|+...+|+ +||||+..+.. ....|+|+||+|||+|.. +.+|+
T Consensus 117 ---------------~~p~-----~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~ 175 (290)
T 3qtc_A 117 ---------------DTEL-----SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHL 175 (290)
T ss_dssp ---------------TSSG-----GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCC
T ss_pred ---------------CCch-----hhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCc
Confidence 0000 00123667889999 99999966532 235899999999999965 46899
Q ss_pred CccccceeeecCCC--HHHHHHHHHHHHHhc
Q 017368 343 AEFWMVEPEMAFSD--LKVRWTYTAHCLVFE 371 (373)
Q Consensus 343 ~EF~~le~e~~~~~--~~~~~~~~~~~~~~~ 371 (373)
.||||+|+|+++.+ +.++..++..+++.+
T Consensus 176 ~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 176 EEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp SEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred chheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 99999999999864 666666666666554
No 19
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.41 E-value=5.4e-07 Score=86.84 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=50.7
Q ss_pred ccceeeccHHHH-HHHHHhh----cCceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHhc
Q 017368 302 RQAFLTVSGQLQ-VETYACA----VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVFE 371 (373)
Q Consensus 302 ~~~~L~~S~ql~-~e~~~~~----~~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~~ 371 (373)
...+|..|.--. +++++.. -.++|++|.|||++..+ ..|+.||+|||+.++. +++.+++..+..++..+
T Consensus 108 e~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d-~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 108 DEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDD-ATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp SSEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CcceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCC-CCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345665554333 5666655 67999999999987644 4599999999999998 67888877766666543
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.13 E-value=4.1e-06 Score=80.63 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=36.2
Q ss_pred ceEEEecceecCCCCCCCCcCccccceeeecCCC----HHHHHHHHHHHHHhc
Q 017368 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD----LKVRWTYTAHCLVFE 371 (373)
Q Consensus 323 ~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~~----~~~~~~~~~~~~~~~ 371 (373)
|+|++|+|||.|..+. .|+.||+|+|+++.-.+ +.+++.++..+++.+
T Consensus 151 rlfeiG~vFR~E~~~~-~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGA-QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEEEECSCCSSS-CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCCCC-CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 7999999999998864 47789999999886542 444555666666544
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.08 E-value=1.2e-05 Score=79.48 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=47.5
Q ss_pred eeeccHHHHHHHHHhhc--CceEEEecceecCCCCCCCCcCccccceeeecCC--CHHHHHHHHHHHHHhc
Q 017368 305 FLTVSGQLQVETYACAV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKVRWTYTAHCLVFE 371 (373)
Q Consensus 305 ~L~~S~ql~~e~~~~~~--~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~--~~~~~~~~~~~~~~~~ 371 (373)
..+.||.+. +++..+- -++|++|.|||+|..+ .+|++||+|||..++.. ++.+++..+..++..+
T Consensus 176 Rt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~d-~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 176 RTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp CSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eccchHHHH-HHHHhcCCCeeEEEeeeEEECCCCC-CCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 345666554 5555432 4799999999998755 45999999999999875 6777777666666543
No 22
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.91 E-value=2.7e-05 Score=77.34 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 47 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD 47 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHH
Confidence 4467899999999999999999999999998753
No 23
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.76 E-value=6.3e-05 Score=76.34 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
-.-.+++..|...+|+.|.+.||.||.||+|.+.
T Consensus 64 P~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~ 97 (458)
T 2i4l_A 64 PLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLA 97 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH
Confidence 4567899999999999999999999999999875
No 24
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.70 E-value=0.00012 Score=74.12 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
..-.+++.+|.+.+++++.+.||.||.||+|....
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 203 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPE 203 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 34568899999999999999999999999998654
No 25
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.67 E-value=0.00027 Score=70.74 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 50 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYL 50 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccH
Confidence 446789999999999999999999999999875
No 26
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.65 E-value=0.00039 Score=68.21 Aligned_cols=33 Identities=3% Similarity=0.080 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~ 66 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT 66 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH
Confidence 345788899999999999999999999999764
No 27
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.61 E-value=0.00018 Score=74.57 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 44 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 78 (572)
T 2j3l_A 44 PLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAE 78 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 45578999999999999999999999999998653
No 28
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.59 E-value=9.2e-05 Score=73.51 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 61 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 61 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 34568899999999999999999999999998653
No 29
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.59 E-value=0.00014 Score=76.92 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 268 P~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~ 302 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVD 302 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 45678999999999999999999999999998753
No 30
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.59 E-value=0.00027 Score=70.30 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+-|.+.||.||.||+|....
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 48 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQ 48 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHH
Confidence 3457889999999999999999999999998753
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.58 E-value=0.00019 Score=71.46 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 49 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP 49 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHH
Confidence 3457889999999999999999999999998753
No 32
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=97.56 E-value=0.00021 Score=69.67 Aligned_cols=70 Identities=11% Similarity=-0.032 Sum_probs=58.1
Q ss_pred CccceeeccHHHHHHHHHh--hc---CceEEEecceecCCC-CCCCCcCccccceeeecCCCHHHHHHHHHHHHHh
Q 017368 301 ARQAFLTVSGQLQVETYAC--AV---SNVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMAFSDLKVRWTYTAHCLVF 370 (373)
Q Consensus 301 ~~~~~L~~S~ql~~e~~~~--~~---~~vy~~~p~fRaE~~-~t~rhl~EF~~le~e~~~~~~~~~~~~~~~~~~~ 370 (373)
+..+-++.|--.|+++... +| +..||..++-|.+.. -+++|.-+|.|.|||.+...-+..|+|+|..++.
T Consensus 64 ~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~ 139 (330)
T 12as_A 64 DAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEA 139 (330)
T ss_dssp TCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHH
T ss_pred CceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHH
Confidence 5677899999999997543 57 999999999998654 6789999999999999998877777777776554
No 33
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.55 E-value=0.00037 Score=71.33 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|.+..
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~e 75 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMS 75 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEST
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 34568899999999999999999999999999765
No 34
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.50 E-value=0.00032 Score=71.46 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~e 77 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTP 77 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 4467899999999999999999999999997643
No 35
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.47 E-value=0.00037 Score=70.89 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|.+..
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 69 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPED 69 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHH
Confidence 34568899999999999999999999999998643
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.46 E-value=0.00064 Score=68.04 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|...||.||.||+|-...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~e 55 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYE 55 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 4457888999999999999999999999996553
No 37
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.41 E-value=0.00039 Score=71.55 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+ ||.||.||+|.+..
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~ 101 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPED 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHH
Confidence 34568888999999999999 99999999998754
No 38
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.40 E-value=0.0006 Score=69.33 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC-----CCCCCc-ceeee
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD-----CEGAGE-MFQVT 208 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~-----~EGa~e-~F~v~ 208 (373)
.-...|..|...+|+.|...||.||.||+|-... .+...+ +|.+.
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~ 74 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE 74 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEe
Confidence 4457888999999999999999999999983221 233345 77764
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.39 E-value=0.0014 Score=55.57 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=66.0
Q ss_pred cceehhhhhcCCCCCC-----CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCC-CceEEEEEeCchhh---hccCCCC
Q 017368 28 DRVLIKSILTRPDGGA-----GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQLVPT 98 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~-----~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg-~~~IQvVv~~~~~~---~~~~L~~ 98 (373)
.-++|++|+++..... ...=..|++.|+|.+++... .-+-+.|.|+|| . |.+....+..+ -...+..
T Consensus 7 ~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~~--I~~~~W~~~~~~~~~~~~~~~ 82 (132)
T 3kdf_D 7 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTVVPP 82 (132)
T ss_dssp EECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEEC---------CCCCT
T ss_pred eeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcC--CeEEEEEECCCCCE--EEEEEEccCCCcccccccccC
Confidence 4467777776431111 11123799999999999888 455568999999 5 99988765421 1356889
Q ss_pred CcEEEEEEEeeCCCCCCccceEEEEeEEEEeec
Q 017368 99 GTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (373)
Q Consensus 99 esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~ 131 (373)
|++|.|.|.+..- .|...|.+..++.+..
T Consensus 83 g~yVrV~G~l~~f----~g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 83 ETYVKVAGHLRSF----QNKKSLVAFKIMPLED 111 (132)
T ss_dssp TCEEEEEEEEEEE----TTEEEEEEEEEEECSS
T ss_pred CCEEEEEEEEEeE----CCEEEEEEEEEEEcCC
Confidence 9999999999864 3667788888876654
No 40
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.36 E-value=0.00042 Score=70.68 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFL-QKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL-~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.+ .+.||.||.||+|....
T Consensus 61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~ 96 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 96 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHH
Confidence 355789999999999999 99999999999997643
No 41
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.0006 Score=70.68 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.+.+.||.||.||+|.+..
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 92 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQS 92 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 35568899999999999999999999999997654
No 42
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.32 E-value=0.00043 Score=70.60 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++.+|.+.+++.+.+.||.||.||+|....
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~ 224 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRF 224 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHH
Confidence 35678899999999999999999999999998764
No 43
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.32 E-value=0.00063 Score=67.50 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 166 l~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
.+++..|...+|+.|.+.||.||.||+|...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 67 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYV 67 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeH
Confidence 4678889999999999999999999999754
No 44
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.31 E-value=0.0028 Score=54.05 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=66.5
Q ss_pred ceehhhhhcCCCCC----C---CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhh----hccCCC
Q 017368 29 RVLIKSILTRPDGG----A---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVP 97 (373)
Q Consensus 29 r~~Ikdi~~~~~l~----~---~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~----~~~~L~ 97 (373)
-++|++|+++.... - ...=..|++.|+|.+++... .-+-+.|.|+||. |.+....+..+ -...+.
T Consensus 11 PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~~~ 86 (136)
T 4gop_B 11 PVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNA--TNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASEIR 86 (136)
T ss_dssp ECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECS--SEEEEEEECSSCE--EEEEEECC--------CCSCC
T ss_pred eEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecC--CeEEEEEECCCCC--EEEEEecccCCcccccccccC
Confidence 36777777643211 0 11224799999999999887 4555689999995 99988764322 245689
Q ss_pred CCcEEEEEEEeeCCCCCCccceEEEEeEEEEeec
Q 017368 98 TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (373)
Q Consensus 98 ~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~ 131 (373)
.|++|.|.|.+..- .|...|.+..++.+..
T Consensus 87 ~g~yVrV~G~v~~f----~g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 87 NNVYVRVLGTLKSF----QNRRSISSGHMRPVID 116 (136)
T ss_dssp TTCEEEEEEEEEEE----TTEEEEEESEEEECSS
T ss_pred CCCEEEEEEEEEEe----CCEEEEEEEEEEECCC
Confidence 99999999999764 3667888888876654
No 45
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.30 E-value=0.00038 Score=71.59 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-...+++.++++.+++.+.+.||.||.||.|....
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~ 216 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKE 216 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 35678999999999999999999999999998764
No 46
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.25 E-value=0.0012 Score=66.63 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++.+|.+.+++.+.+.||.||.||+|....
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~ 197 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREK 197 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHH
Confidence 4568899999999999999999999999998653
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.23 E-value=0.001 Score=69.18 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
....+++.++++.+++.+.++||.||.||.|.+..
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~ 306 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREK 306 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 45679999999999999999999999999998654
No 48
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.21 E-value=0.00053 Score=72.61 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.+.+.||.||.||+|....
T Consensus 268 P~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~ 302 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 302 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHH
Confidence 45678999999999999999999999999998654
No 49
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.20 E-value=0.00049 Score=70.80 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
....+++.++++.+++.+.++||.||.||.|....
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~ 239 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRD 239 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 45679999999999999999999999999998754
No 50
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.19 E-value=0.0016 Score=65.24 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
-.-.+++..|...+|+.|...||.||.||+|...
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~ 58 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 58 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 4456788999999999999999999999999643
No 51
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.16 E-value=0.00061 Score=69.34 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 165 il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 80 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTE 80 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehH
Confidence 467899999999999999999999999998764
No 52
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.12 E-value=0.0026 Score=64.69 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|...||.||.||+|-...
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e 74 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEE 74 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGG
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehh
Confidence 3457889999999999999999999999998754
No 53
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.11 E-value=0.0024 Score=52.50 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=61.8
Q ss_pred CCcEEEEEEEEEee---e----cCCC-ceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCcc
Q 017368 46 AGRQVRVGGWVKTG---R----EQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (373)
Q Consensus 46 igk~V~V~GWV~si---R----~~Gk-~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g 117 (373)
.|+.+.+.|.|.++ | +.|. +++.++.|.|+||. |.+.+..+.......+..|++|.|.|.+.... -.|
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~--I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~--f~g 90 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGE--LRAVFWTENIKLLKKFREGDVIRIKDVNIRGG--FGG 90 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEE--EEEEEETTGGGGGGTCCTTSEEEEEEEEECCC--SSS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCe--EEEEEeCchhhhhhcCCCCCEEEEEeeEEccc--cCC
Confidence 47899999999988 2 2331 27999999999984 99998876543345689999999999986542 146
Q ss_pred ceEEEEeEEEEeecC
Q 017368 118 KIELRVQKVVDVGMV 132 (373)
Q Consensus 118 ~vEL~v~~i~VLs~a 132 (373)
.++|.+.+...+.++
T Consensus 91 ~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 91 RKEAHLMPRSTVEVL 105 (115)
T ss_dssp SCEEEECTTCCEEEE
T ss_pred eEEEEECCCceEEEC
Confidence 788888765555444
No 54
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.04 E-value=0.0017 Score=67.32 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|.+.||.||.||+|.+..
T Consensus 52 P~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~e 86 (518)
T 3ial_A 52 PYGFFMENAIMRLCEEEYAKVGISQILFPTVIPES 86 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHH
Confidence 45678999999999999999999999999998654
No 55
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.94 E-value=0.012 Score=48.41 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=68.1
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeee-------cCCC-ceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCC
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-------EQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR-------~~Gk-~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~e 99 (373)
....|.+|.. +..|.|.|+|.++- +.|+ +++.=+.|.|.||. |.+++..+..+. .+..|
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~--IrvtlW~~~a~~--~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGS--IRVTLWDNLTDI--DVGRG 70 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEE--EEEEEEGGGGGS--CCCTT
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECccccc--ccCCC
Confidence 3456676652 47899999997763 1221 24556899999984 999988765322 68999
Q ss_pred cEEEEEEEeeCCCCCCccceEEEEeEEEEeecCC
Q 017368 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (373)
Q Consensus 100 svV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~ 133 (373)
++|.|.|.+.... .|++||.+.+..++.+|+
T Consensus 71 dvv~i~g~vk~~~---~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 71 DYVRVRGYIREGY---YGGLECTANYVEILKKGE 101 (105)
T ss_dssp CEEEEEEEEEECT---TSSEEEEEEEEEEEECCC
T ss_pred CEEEEEEEEEEcc---CCCEEEEeCCceEEEecc
Confidence 9999999998764 469999999999999886
No 56
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.92 E-value=0.0087 Score=52.90 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=62.9
Q ss_pred cEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-h---hhccCCCCCcEEEEEEEeeCCCCCCccceEEEE
Q 017368 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-A---DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (373)
Q Consensus 48 k~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-~---~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v 123 (373)
+.|.|.|.|.+++... +.+++.|.|+||. .|.|++..+. . .....+..|++|.|.|.+..- .+..+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~--~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f----r~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE--GKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF----RSEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET--TEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS----SSSCEEEE
T ss_pred EEEEEEEEEEEEEEeC--CEEEEEEecCCCC-eEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee----CCEEEEEE
Confidence 5799999999999888 6788899999994 6999987654 1 123347899999999999764 46789999
Q ss_pred eEEEEeec
Q 017368 124 QKVVDVGM 131 (373)
Q Consensus 124 ~~i~VLs~ 131 (373)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99998874
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=96.91 E-value=0.0088 Score=61.73 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
....+++.+|++.+++.+.+.||.||.||.|....
T Consensus 216 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~ 250 (501)
T 1wle_A 216 GAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGV 250 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 45678999999999999999999999999998754
No 58
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.90 E-value=0.015 Score=46.80 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=62.9
Q ss_pred eehhhhhcCCCCCCCCCCcEEEEEEEEEeee---c----CCC-ceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcE
Q 017368 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGR---E----QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (373)
Q Consensus 30 ~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR---~----~Gk-~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esv 101 (373)
..|.+|. .|..|.|.|+|.++- . .|. +++.=+.|.|.||. |.+++..+..+. .++.|++
T Consensus 3 ~kI~dl~---------~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~--I~~tlW~~~~~~--~i~~Gdv 69 (97)
T 3e0e_A 3 YKISELM---------PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGS--IRGTLWNELADF--EVKKGDI 69 (97)
T ss_dssp ECGGGCC---------TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEE--EEEEEEGGGGGC--CCCTTCE
T ss_pred eEHHHCC---------CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECCcccc--ccCCCCE
Confidence 4567665 257999999997763 2 221 24666899999985 999987764322 5899999
Q ss_pred EEEEEEeeCCCCCCccceEEEEeEEEEeecC
Q 017368 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 102 V~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a 132 (373)
|.|.|.+... .+.+||.+.+.-.+.++
T Consensus 70 v~i~g~v~~~----~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 70 AEVSGYVKQG----YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEEc----CCeEEEEECCCcEEEEC
Confidence 9999998765 36899999988877765
No 59
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.83 E-value=0.0043 Score=63.58 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
-.-.++|..|...+|+.|...||.||.||+|-..
T Consensus 78 P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~ 111 (517)
T 4g85_A 78 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 111 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 4556889999999999999999999999999643
No 60
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.79 E-value=0.0026 Score=62.30 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=40.7
Q ss_pred cceeec--cHHHHHHHHHhhcC--ceEEEecceecCCCCCCCCcCccccceeeec-----CCCHHHHHH-HHHHH
Q 017368 303 QAFLTV--SGQLQVETYACAVS--NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA-----FSDLKVRWT-YTAHC 367 (373)
Q Consensus 303 ~~~L~~--S~ql~~e~~~~~~~--~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~-----~~~~~~~~~-~~~~~ 367 (373)
...|.. ||.+ ++++...-. ++|++|.|||.+ . ...|+++|.|+|.-.. |.+++.+++ +++.+
T Consensus 163 ~~vLRThtsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 163 TRLLRTQTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SCEECSCTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CceecccCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 344443 4443 566654433 899999999998 3 4579999999987665 444555555 55555
No 61
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=96.79 E-value=0.003 Score=65.51 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
...+++.++++.+++.+.+.||.||.||.|....
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~e 232 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKE 232 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchH
Confidence 5678999999999999999999999999997653
No 62
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.65 E-value=0.023 Score=58.71 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=36.1
Q ss_pred ceEEEecceecCCCCCCCCcCccccceeeec--CCCHHHHHHHHHHHHHh
Q 017368 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA--FSDLKVRWTYTAHCLVF 370 (373)
Q Consensus 323 ~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~--~~~~~~~~~~~~~~~~~ 370 (373)
++|++|+|||.|..+ ..|+++|+|+|..++ -+++.++.-++..++..
T Consensus 349 riFeiGrVFR~d~~D-atHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 349 KYFSIDRVFRNETLD-ATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTK 397 (508)
T ss_dssp EEEEEEEEECCSCCC-SSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eEEEEccEEecCCCC-CCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 799999999999865 469999999998765 24566666666666554
No 63
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.55 E-value=0.0037 Score=64.39 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHH--hCCcEEEecCeeecCC
Q 017368 164 AVARIRNALAYATHTFLQ--KQGFLYIHTPIITTSD 197 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~--~~gFiEV~TPiLt~~~ 197 (373)
.-.+++..|...+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 456889999999999998 8999999999999875
No 64
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=96.18 E-value=0.035 Score=52.50 Aligned_cols=101 Identities=21% Similarity=0.236 Sum_probs=69.6
Q ss_pred cccCcceehhhhhcCCC--CCCCCCC---cEEEEEEEEEeeecCCCceeEEEEEEcCCC-CceEEEEEeCchhh---hcc
Q 017368 24 HQFSDRVLIKSILTRPD--GGAGLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQ 94 (373)
Q Consensus 24 ~~~~~r~~Ikdi~~~~~--l~~~~ig---k~V~V~GWV~siR~~Gk~kl~FIdLRDgsg-~~~IQvVv~~~~~~---~~~ 94 (373)
.+--.-++|++|+++.. ..-...| ..|++.|+|.++...+ ..+-+.|.|+|| . |.+.+..+... -..
T Consensus 43 ~~~l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~--~~~~~~L~D~TG~~--I~~k~W~~~~~~~~~~~ 118 (270)
T 2pi2_A 43 AQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENT 118 (270)
T ss_dssp CCCCEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEECC-------CC
T ss_pred CCceEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEecc--ceEEEEEECCCCCE--EEEEEEcCcCcccchhh
Confidence 34446688999986411 0001112 3699999999998877 455667999998 5 88888754321 134
Q ss_pred CCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecC
Q 017368 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 95 ~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a 132 (373)
.+..|++|.|.|.+..- .+...|.+..|+.+...
T Consensus 119 ~~~~G~yVrV~G~v~~f----~g~~qi~i~~ir~v~d~ 152 (270)
T 2pi2_A 119 VVPPETYVKVAGHLRSF----QNKKSLVAFKIMPLEDM 152 (270)
T ss_dssp CCCTTCEEEEEEEEEEE----TTEEEEEEEEEEECSCT
T ss_pred cCCCCCEEEEEEEEEec----CCeeEEEEEEEEecCCH
Confidence 58899999999999864 35677888888776653
No 65
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=96.04 E-value=0.0046 Score=64.12 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHhCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHT-FLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~-fL~~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++.+|.+.+++ ++.+.||.||.||+|.+..
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~e 263 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWE 263 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHH
Confidence 3456788999999996 6889999999999998753
No 66
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=95.90 E-value=0.024 Score=53.56 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=32.3
Q ss_pred CceEEEecceecCCCCCCCCcCccccceeeecCCC-H---HHHHHHHHHHHHh
Q 017368 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD-L---KVRWTYTAHCLVF 370 (373)
Q Consensus 322 ~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~~~-~---~~~~~~~~~~~~~ 370 (373)
-|.|++||+||.|.+.. -||||+++|.--.+ . -++|.++..+++.
T Consensus 71 ~R~~y~g~vfR~e~~~~----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp EEEECCEEEEEEETTEE----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeceEEecCCCCC----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 48899999999999765 69999999996554 1 2234444444443
No 67
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.78 E-value=0.049 Score=45.31 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=60.3
Q ss_pred eehhhhhcCCCCCCCCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhc-cCCCCCcEEEEEEEe
Q 017368 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVEGML 108 (373)
Q Consensus 30 ~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~-~~L~~esvV~V~G~v 108 (373)
+++.++.. ...+..|+|.|.|.+.-..- + ..+||++|. |+|-++.+. |. ..++.++-|.|.|.|
T Consensus 26 ~TV~~a~~------~~Dd~~V~L~G~Iv~~~~~d--~---Y~F~D~TG~--I~VeId~~~--w~g~~v~p~~~Vri~Gev 90 (109)
T 1nnx_A 26 TTVESAKS------LRDDTWVTLRGNIVERISDD--L---YVFKDASGT--INVDIDHKR--WNGVTVTPKDTVEIQGEV 90 (109)
T ss_dssp CCHHHHTT------SCSSEEEEEEEEEEEEEETT--E---EEEEETTEE--EEEECCGGG--STTCCCCTTSCEEEEEEE
T ss_pred EeHHHHhh------CcCCCeEEEEEEEEEEeCCC--e---EEEECCCcc--EEEEEChhh--cCCcccCCCCEEEEEEEE
Confidence 56666653 35688999999996543322 3 458999985 999887664 33 458899999999999
Q ss_pred eCCCCCCccceEEEEeEEEEee
Q 017368 109 KNPPEGTKQKIELRVQKVVDVG 130 (373)
Q Consensus 109 ~~~~~~~~g~vEL~v~~i~VLs 130 (373)
-+.- ...||.|..|+++.
T Consensus 91 Dkd~----~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 91 DKDW----NSVEIDVKQIRKVN 108 (109)
T ss_dssp EEET----TEEEEEEEEEEEC-
T ss_pred CCCC----CceEEEEEEEEEcc
Confidence 8642 45799999998875
No 68
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=95.39 E-value=0.015 Score=57.40 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCeeecCCC
Q 017368 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSDC 198 (373)
Q Consensus 164 ~il~iRS~i~~~iR~fL~~~gFiEV~TPiLt~~~~ 198 (373)
..-+++.+|...+++ ..++||.||-||.|.....
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~ 95 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQ 95 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHH
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHH
Confidence 445788889999999 8889999999999987654
No 69
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.39 E-value=0.081 Score=43.81 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred cEEEEEEEEEee---e----cCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEE-EEeeCCCCCCccce
Q 017368 48 RQVRVGGWVKTG---R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKI 119 (373)
Q Consensus 48 k~V~V~GWV~si---R----~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~-G~v~~~~~~~~g~v 119 (373)
..|.+.|.|.++ | +.|++.+.=+.|.|.||. |.+.+..+.. ..+..|++|.|. |.+..- .|.+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~---~~~~~G~vv~i~~g~v~~~----~g~~ 83 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA---GSIKEGQVVKIENAWTTAF----KGQV 83 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT---TCCCTTCEEEEEEEEEEEE----TTEE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh---hcCCCCCEEEEEeEEEEEe----CCEE
Confidence 468899999876 4 233225777899999985 9998887642 357899999999 888654 4789
Q ss_pred EEEEeEEEEeecCCCCCCC
Q 017368 120 ELRVQKVVDVGMVDPAKYP 138 (373)
Q Consensus 120 EL~v~~i~VLs~a~~~~~P 138 (373)
+|.+.+...+.++....+|
T Consensus 84 qL~i~~~~~i~~~~~~~~~ 102 (119)
T 1o7i_A 84 QLNAGSKTKIAEASEDGFP 102 (119)
T ss_dssp EEEECTTCEEEECCCTTCC
T ss_pred EEEECCCEEEEEcCCcCCC
Confidence 9999875555554323455
No 70
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=95.23 E-value=0.058 Score=55.07 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=38.6
Q ss_pred ceeec-cHHHHHHHHHhhc--C------ceEEEecceecCCC-CCCCC----cCccccceeeecCCCHHHHHHHHHHH
Q 017368 304 AFLTV-SGQLQVETYACAV--S------NVYTFGPTFRAEHS-HTSRH----LAEFWMVEPEMAFSDLKVRWTYTAHC 367 (373)
Q Consensus 304 ~~L~~-S~ql~~e~~~~~~--~------~vy~~~p~fRaE~~-~t~rh----l~EF~~le~e~~~~~~~~~~~~~~~~ 367 (373)
.||.. +-|-+...|...+ . ++.+||+|||+|.. .+.+| .-||+|+|.+. |++-++..+.+.++
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~ 223 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFW 223 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHH
Confidence 67777 6666666664432 2 37899999999952 12223 36999999994 88876665533333
No 71
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=94.85 E-value=0.044 Score=55.70 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=38.3
Q ss_pred cCccceeec-cHHHHHHHHHhh-------c-CceEEEeccee---cCCCCCCCC----cCccccceeeecCCCHHHHHHH
Q 017368 300 FARQAFLTV-SGQLQVETYACA-------V-SNVYTFGPTFR---AEHSHTSRH----LAEFWMVEPEMAFSDLKVRWTY 363 (373)
Q Consensus 300 f~~~~~L~~-S~ql~~e~~~~~-------~-~~vy~~~p~fR---aE~~~t~rh----l~EF~~le~e~~~~~~~~~~~~ 363 (373)
++.+.||.. .-|-+..++... | =++++||+||| +|-+. || +-||+|.|.+. |++.++..+.
T Consensus 133 ~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~--~~Gl~R~REF~q~E~~~-F~~pe~~~e~ 209 (454)
T 1g5h_A 133 LKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT--PSSVTRVGEKTEASLVW-FTPTRTSSQW 209 (454)
T ss_dssp HHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHH
T ss_pred cCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC--CCCccccCceehhheEE-EeCHhhHHHH
Confidence 455678887 444444443322 2 36899999999 69753 43 46999999995 8887776653
Q ss_pred HHH
Q 017368 364 TAH 366 (373)
Q Consensus 364 ~~~ 366 (373)
+..
T Consensus 210 ~~~ 212 (454)
T 1g5h_A 210 LDF 212 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 72
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=94.74 E-value=0.45 Score=38.85 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=59.1
Q ss_pred CcEEEEEEEEEeeecCCC-ceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEE-EEeeCCCCCCccceEEEEe
Q 017368 47 GRQVRVGGWVKTGREQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKIELRVQ 124 (373)
Q Consensus 47 gk~V~V~GWV~siR~~Gk-~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~-G~v~~~~~~~~g~vEL~v~ 124 (373)
++.|.+.|.|.++-.... .....+.|.|.||. |-+++..+. ....+..|++|.|. |.+..- .|.++|.+.
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~--~~~~~~~G~~V~i~n~~v~~~----~G~~~L~v~ 86 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA--ELPLLEQGESYLLRSVVVGEY----NDRFQVQVN 86 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG--CCCCCCTTCEEEEEEEEEEEE----TTEEEEEEC
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc--cccccCCCCEEEEEEEEEEEE----CCEEEEEEC
Confidence 678999999988743321 14556899999996 999988643 23568999999999 677664 478999998
Q ss_pred EEEEeecCC
Q 017368 125 KVVDVGMVD 133 (373)
Q Consensus 125 ~i~VLs~a~ 133 (373)
+...+.+.+
T Consensus 87 ~~~~I~~~~ 95 (109)
T 2kbn_A 87 KNSSIEKLS 95 (109)
T ss_dssp SSSEEEECS
T ss_pred CceEEEECC
Confidence 776666554
No 73
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=94.70 E-value=0.019 Score=61.41 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCcEEEecCeeecCC
Q 017368 163 AAVARIRNALAYATHTFLQ-KQGFLYIHTPIITTSD 197 (373)
Q Consensus 163 ~~il~iRS~i~~~iR~fL~-~~gFiEV~TPiLt~~~ 197 (373)
-.-.+++..|...+|+.|. ..||.||.||+|.+..
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~ 133 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEP 133 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHH
Confidence 3457899999999999998 5699999999998753
No 74
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.04 Score=45.48 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=60.3
Q ss_pred cEEEEEEEEEee---ec----CCCceeEEEEEEcCCCCceEEEEEeCchh-hhccCCCCCcEEEEEE-EeeCCCCC---C
Q 017368 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEG-MLKNPPEG---T 115 (373)
Q Consensus 48 k~V~V~GWV~si---R~----~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~-~~~~~L~~esvV~V~G-~v~~~~~~---~ 115 (373)
..++|+|||.++ |. .|.+++.=++|.|.+| .|++++..+.. .+...|..|+++.|.| .|...... .
T Consensus 15 ~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~ 92 (114)
T 1ynx_A 15 NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNL 92 (114)
T ss_dssp CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSS
T ss_pred CceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccC
Confidence 358899999854 11 2233788899999998 49999987653 3667799999999985 44443211 3
Q ss_pred ccceEEEEeEEEEeecCC
Q 017368 116 KQKIELRVQKVVDVGMVD 133 (373)
Q Consensus 116 ~g~vEL~v~~i~VLs~a~ 133 (373)
.+++||....-..+.+|.
T Consensus 93 ~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 93 THPYELNLDRDTVIEECF 110 (114)
T ss_dssp SSCEEEEECSSCEEEESC
T ss_pred CCCEEEEECCCCEEEECC
Confidence 578999998777777764
No 75
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.44 E-value=0.36 Score=44.75 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=58.5
Q ss_pred cEEEEEEEEEeeecCCCc------eeEEEEEEcCCCC-ceEEEEEeCchhh-h---ccCCCCCcEEEEEEEeeCCCCC--
Q 017368 48 RQVRVGGWVKTGREQGKG------SFAFLEVNDGSCP-ANLQVIVDKDVAD-L---GQLVPTGTCVYVEGMLKNPPEG-- 114 (373)
Q Consensus 48 k~V~V~GWV~siR~~Gk~------kl~FIdLRDgsg~-~~IQvVv~~~~~~-~---~~~L~~esvV~V~G~v~~~~~~-- 114 (373)
+.|.|.|.|-.++-.-.. ...|+.|-|.||. ..|.|.++..... . ......|.+|.|+|.+..-...
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 579999999888644411 4699999999996 2466666543211 0 1124579999999999875310
Q ss_pred --CccceEEEEeEEEEeecC
Q 017368 115 --TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 115 --~~g~vEL~v~~i~VLs~a 132 (373)
..-.-||.++++.+++..
T Consensus 166 ~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTSCCCEEEEEEEEEEEESS
T ss_pred cccccceEEEEEEEEEeccC
Confidence 111469999999999865
No 76
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=93.06 E-value=0.68 Score=46.49 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCCcEEEEEEEEEee-ecCCCceeEEEEEEcCCCCceEEEEEeCch---hhhccCCCCCcEEEEEEEeeCCCCCCccceE
Q 017368 45 LAGRQVRVGGWVKTG-REQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (373)
Q Consensus 45 ~igk~V~V~GWV~si-R~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~---~~~~~~L~~esvV~V~G~v~~~~~~~~g~vE 120 (373)
.....+.|.|.|.+. +.... +=+|+.|.|+++ .|.|++-..- -+....|..||.|.|.|-+.. | .
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~------g--t 350 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK------D--T 350 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTE--EEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET------T--E
T ss_pred ccCceEEEEEEEecCcEeccC-ceEEEEEEcCCC--EEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC------C--E
Confidence 346799999999988 44432 688999999865 4999885522 235667899999999999865 2 7
Q ss_pred EEEeEEEEeecC
Q 017368 121 LRVQKVVDVGMV 132 (373)
Q Consensus 121 L~v~~i~VLs~a 132 (373)
|.++++++++-+
T Consensus 351 LnvEk~~v~~l~ 362 (402)
T 3au7_A 351 INLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEEEcccC
Confidence 999999999875
No 77
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.05 E-value=0.58 Score=38.03 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred CcEEEEEEEEEee-----ecCCC-ceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEE-EEeeCCCCCCccce
Q 017368 47 GRQVRVGGWVKTG-----REQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKI 119 (373)
Q Consensus 47 gk~V~V~GWV~si-----R~~Gk-~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~-G~v~~~~~~~~g~v 119 (373)
...|.+.|.|.++ ++.|+ +.+.=+.|.|.||. |.+.+..+. +..|++|.|. |.+..- .|.+
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~~------l~~Gdvv~i~ng~v~~~----~g~~ 80 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGKQ------LQDSDVVRIDNARVAQF----NGYL 80 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESSC------CCTTEEEEEEEEEEEEE----TTEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcCc------cCCCCEEEEEeeEEeEE----CCEE
Confidence 3457888887654 23441 02677889999985 988887653 8999999999 777654 4789
Q ss_pred EEEEeEEEEeecCC
Q 017368 120 ELRVQKVVDVGMVD 133 (373)
Q Consensus 120 EL~v~~i~VLs~a~ 133 (373)
+|.+.+...|.+..
T Consensus 81 ~L~v~~~~~I~~~~ 94 (106)
T 2k75_A 81 SLSVGDSSRIESVN 94 (106)
T ss_dssp EEEECTTSEEEECC
T ss_pred EEEECCcEEEEECC
Confidence 99998766666554
No 78
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=91.94 E-value=0.82 Score=38.39 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEE
Q 017368 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (373)
Q Consensus 44 ~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v 123 (373)
.++|++|+|-|+|.+++..| +.+ .|..+.| +.++|.+..... ..+ +.+|+|.|+|... ..|.+
T Consensus 19 ~fvgk~VrivGkV~~~~~~g--~~~--~l~s~Dg-~~Vtv~l~~p~~---~~l--~~~vEViG~V~~~-------~tI~~ 81 (121)
T 3kdf_A 19 QFIDKPVCFVGRLEKIHPTG--KMF--ILSDGEG-KNGTIELMEPLD---EEI--SGIVEVVGRVTAK-------ATILC 81 (121)
T ss_dssp GGTTCEEEEEEEEEEECTTS--SEE--EEECTTS-CEEEEECSSCCS---SCC--CSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCeEEEEEEEEEEcCCC--CEE--EEEeCCC-CEEEEEeCCCCC---ccc--CcEEEEEEEECCC-------CeEEE
Confidence 68899999999999999888 433 4555444 358888766321 123 4599999999743 34777
Q ss_pred eEEEEeecC
Q 017368 124 QKVVDVGMV 132 (373)
Q Consensus 124 ~~i~VLs~a 132 (373)
..+..++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 776666643
No 79
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=91.80 E-value=0.26 Score=45.08 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=64.3
Q ss_pred ceehhhhhcCCCCCCCCCCcEEEEEEEEEee---ec----CCCceeEEEEEEcCCCCceEEEEEeCchh-hhccCCCCCc
Q 017368 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGT 100 (373)
Q Consensus 29 r~~Ikdi~~~~~l~~~~igk~V~V~GWV~si---R~----~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~-~~~~~L~~es 100 (373)
-+.|.+|.. -...++|+|||.++ |. .|.+++.-++|.|.+| .|++++..+.. .|...|..|+
T Consensus 8 ~~~I~~L~p--------~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~~~~l~~G~ 77 (246)
T 1jmc_A 8 VVPIASLTP--------YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFFPLIEVNK 77 (246)
T ss_dssp BCCGGGCCT--------TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHGGGCCTTC
T ss_pred eEEHHHCCC--------CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHhhhhcccCC
Confidence 355676642 23478899999865 31 2223677789999999 49999987653 3567799999
Q ss_pred EEEEEEEeeCCCCC----CccceEEEEeEEEEeecCC
Q 017368 101 CVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVD 133 (373)
Q Consensus 101 vV~V~G~v~~~~~~----~~g~vEL~v~~i~VLs~a~ 133 (373)
++.|.+--++...+ ..+.+||....-..+.++.
T Consensus 78 vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 78 VYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp EEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred EEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 99998643332111 3578999997655555553
No 80
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=91.48 E-value=0.27 Score=49.42 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=34.8
Q ss_pred cCccceeeccH-HHHHHHHHhhcCceEEEecceecCCCCCCCCcCccccceee
Q 017368 300 FARQAFLTVSG-QLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPE 351 (373)
Q Consensus 300 f~~~~~L~~S~-ql~~e~~~~~~~~vy~~~p~fRaE~~~t~rhl~EF~~le~e 351 (373)
.+...-|..+- -..++++..+..++|.+|.|||.+..++ -|.++|.++|--
T Consensus 110 i~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~da-~h~n~fhQ~egv 161 (415)
T 3cmq_A 110 LNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDS-QHYPIFHQLEAV 161 (415)
T ss_dssp SSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCBT-TBCSEEEEEEEE
T ss_pred ecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchhh-hhhHHhcCCCcE
Confidence 35555664432 1223455556679999999999997664 588899998843
No 81
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=91.38 E-value=0.62 Score=38.85 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=41.8
Q ss_pred EEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecCC
Q 017368 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (373)
Q Consensus 81 IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a~ 133 (373)
|+||+..+..+..+-|+.|+-|.|+|.+..+.. ....++|++++|+.|+...
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~-~G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESST-TCSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECCC-CCCEEEEEEEEEEEcCCCC
Confidence 889998876544567999999999999997542 2367999999999998764
No 82
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=89.99 E-value=0.34 Score=54.83 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=48.0
Q ss_pred CCCcEEEEEEEEEeeecCC-Cc--eeEEEEEEcCCCCceEEEEEeCchh-hhccCCCCCcEEEEEEEeeCCCCCCccceE
Q 017368 45 LAGRQVRVGGWVKTGREQG-KG--SFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (373)
Q Consensus 45 ~igk~V~V~GWV~siR~~G-k~--kl~FIdLRDgsg~~~IQvVv~~~~~-~~~~~L~~esvV~V~G~v~~~~~~~~g~vE 120 (373)
..|+.|+|.|.|.++|..+ ++ .++|+.|-|.+|. +.+|+-++.. .+...|..+.+|.|+|+|.... .+.
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-----~~~ 1112 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-----ELR 1112 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC-------------CTTCEEEEEEEEC----------C
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-----CcE
Confidence 3578999999998886443 11 4999999999986 9999877653 3556688999999999997541 467
Q ss_pred EEEeEEEEeecC
Q 017368 121 LRVQKVVDVGMV 132 (373)
Q Consensus 121 L~v~~i~VLs~a 132 (373)
|.+.++.-++.+
T Consensus 1113 l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1113 VLAQAVWTLEEV 1124 (1220)
T ss_dssp EEEEEEEEHHHH
T ss_pred EEEeeeecHHHH
Confidence 888888766644
No 83
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=88.74 E-value=0.97 Score=37.48 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=41.0
Q ss_pred CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCC
Q 017368 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNP 111 (373)
Q Consensus 44 ~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~ 111 (373)
.+.|++|+|-|+|.+++. + . +.|....+ +.|+|.++.+. .+..+.+|+|.|+|...
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~--~~l~s~d~-~~Vtv~l~~~~-----~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T--LLMQTSDL-GNVEIAMTPDS-----DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E--EEEECTTS-CEEEEECCSSC-----CGGGCSEEEEEEEECTT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E--EEEEeCCC-CEEEEEeCCCC-----CcccCcEEEEEEEEcCC
Confidence 578999999999999985 3 1 45665444 25887776542 23468999999999754
No 84
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=88.13 E-value=4 Score=35.18 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=46.9
Q ss_pred CCCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEE
Q 017368 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (373)
Q Consensus 44 ~~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v 123 (373)
.++|++|+|-|+|.++-..| +. +.|....+ ..|+|.++.... -..+-+|+|.|+|... ..|.+
T Consensus 40 ~fvGk~VriVGkV~~~~~~G--~~--~~l~s~Dg-~~VtV~l~~pL~-----~~~~~~VEViG~V~~~-------~tI~~ 102 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTG--KM--FILSDGEG-KNGTIELMEPLD-----EEISGIVEVVGRVTAK-------ATILC 102 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTS--SE--EEEECTTS-CEEEEECSSCCS-----SCCCSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCEEEEEEEEeEEcCCC--CE--EEEEeCCC-cEEEEEeCCCCC-----ccCCCEEEEEEEECCC-------CcEEE
Confidence 68899999999999885455 22 35666555 357777654311 1347799999999542 23666
Q ss_pred eEEEEeec
Q 017368 124 QKVVDVGM 131 (373)
Q Consensus 124 ~~i~VLs~ 131 (373)
..+.-++.
T Consensus 103 ~~~~~fGd 110 (142)
T 2pi2_E 103 TSYVQFKE 110 (142)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 66555554
No 85
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=86.87 E-value=0.75 Score=47.79 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=47.8
Q ss_pred CccceeeccHHHH-HHHHHh----hc--CceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHhc
Q 017368 301 ARQAFLTVSGQLQ-VETYAC----AV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVFE 371 (373)
Q Consensus 301 ~~~~~L~~S~ql~-~e~~~~----~~--~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~~ 371 (373)
.+...|..|---. ++.+.. +- -++|++|+|||.|..-...|+.||+|++..++. +++.++...+..++..+
T Consensus 178 ~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 178 SSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred ccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4456777765331 233321 11 379999999998654124588999999999987 46777777777777654
No 86
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=86.25 E-value=1.5 Score=35.62 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=38.0
Q ss_pred EEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEe
Q 017368 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129 (373)
Q Consensus 81 IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VL 129 (373)
++||+..+..+ ...|+.|+-|.|+|.+..+.- ....+.|++++|+.+
T Consensus 55 i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~rs~-~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAE-EWQYRQGDCATVEGFLAQKSR-RSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHH-HSTTCTTCEEEEEEEEEESSS-SCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHhh-hhccCCCCEEEEEEEEEECcc-CCccEEEEEEEEEEc
Confidence 78888776655 555999999999999998764 334899999999876
No 87
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=85.67 E-value=1.6 Score=37.98 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=38.1
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC----CC-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+. .+ ....+||.+.+|.+|...
T Consensus 58 i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 78888876543 345689999999999998643 22 234699999999998754
No 88
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=85.64 E-value=2.7 Score=34.22 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=37.5
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC----CC-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~~i~VLs~a 132 (373)
++|++..+..+ ..+.|+.|+.|.|+|.+..+. +| ....+||.+++|..|+..
T Consensus 52 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 88888766533 345689999999999998643 22 234689999999999764
No 89
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=84.86 E-value=2.3 Score=34.25 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=34.9
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC--CCCccceEEEEeEEEEeec
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP--EGTKQKIELRVQKVVDVGM 131 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~--~~~~g~vEL~v~~i~VLs~ 131 (373)
++|++..+..+ ..+.|+.|+-|.|+|.+..+. .|.+. .||++++++.++.
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCEE-EEEEEEEEEECcC
Confidence 88888776543 346699999999999999862 12223 9999999998864
No 90
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.74 E-value=0.74 Score=46.11 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=57.6
Q ss_pred cEEEEEEEEEee---ec----CCCceeEEEEEEcCCCCceEEEEEeCchh-hhccCCCCCcEEEEEEEeeCCCCC----C
Q 017368 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEG----T 115 (373)
Q Consensus 48 k~V~V~GWV~si---R~----~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~-~~~~~L~~esvV~V~G~v~~~~~~----~ 115 (373)
..++|.|||.++ |. .|.+++.-++|.|.+| .|++++..+.. .|...|..|+++.|.+--++...+ .
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~ 91 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNL 91 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCSC
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCccccC
Confidence 478999999753 42 1223788899999998 49999988753 366789999999998643332211 3
Q ss_pred ccceEEEEeEEEEeecC
Q 017368 116 KQKIELRVQKVVDVGMV 132 (373)
Q Consensus 116 ~g~vEL~v~~i~VLs~a 132 (373)
.+.+||....-..+.++
T Consensus 92 ~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 92 QNEYEITFENSTEIEEC 108 (444)
T ss_dssp CCSEEEEECTTCEEEEC
T ss_pred CCCEEEEEcCCcEEEEc
Confidence 47899999754444443
No 91
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=82.61 E-value=21 Score=30.53 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCCcEEEEEEEEE--eeecC-CCceeEEEEEEc-CCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccce
Q 017368 44 GLAGRQVRVGGWVK--TGREQ-GKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (373)
Q Consensus 44 ~~igk~V~V~GWV~--siR~~-Gk~kl~FIdLRD-gsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~v 119 (373)
...|+.++|.|.|. ++.+. ....+.|. |.| +.. .|.|++..-.. ...+.|.-|.|+|.+....
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~--~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g------- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLGG--EILVTYDDLLP---DLFREGQGIVAQGVLGEDG------- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTCC--CEEEEECSCCT---TSCCSSSEEEEEEEECSTT-------
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCCC--EEEEEECCCCC---ccccCCCeEEEEEEECCCC-------
Confidence 46789999999996 45443 21258875 788 654 59999887543 3467899999999996432
Q ss_pred EEEEeEEEEeecCCCCCCC
Q 017368 120 ELRVQKVVDVGMVDPAKYP 138 (373)
Q Consensus 120 EL~v~~i~VLs~a~~~~~P 138 (373)
-++++ +||.+|+ ..|-
T Consensus 96 ~F~A~--eVLaKhd-ekY~ 111 (136)
T 1j6q_A 96 KLAAT--EVLAKHD-ENYM 111 (136)
T ss_dssp SEEEE--EEECCC------
T ss_pred eEEEE--EEEecCC-CCCC
Confidence 15666 4799997 4453
No 92
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=78.94 E-value=11 Score=39.12 Aligned_cols=47 Identities=0% Similarity=0.017 Sum_probs=31.0
Q ss_pred ceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHh
Q 017368 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVF 370 (373)
Q Consensus 323 ~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~ 370 (373)
++|++|.+||.+... ..|..|+.++..-++- .++.++.-.+..++..
T Consensus 473 rlFEiG~Vf~~d~~~-~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 473 KLFEISDIVIKDSNT-DVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEECTTS-TTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeeeEEecCCcc-ccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 689999999986543 3577788888776543 2455554455555443
No 93
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=78.51 E-value=2.3 Score=44.35 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=35.6
Q ss_pred ceEEEecceecCCC-CCCCCcCccccceeeecCC--CHHHHHHHHHHHHHh
Q 017368 323 NVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMAFS--DLKVRWTYTAHCLVF 370 (373)
Q Consensus 323 ~vy~~~p~fRaE~~-~t~rhl~EF~~le~e~~~~--~~~~~~~~~~~~~~~ 370 (373)
++|++|.|||.+.. + ..|..||.|++.-++.- ++.++.-.+..++..
T Consensus 219 rlFEiGrVFr~D~~~d-~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~ 268 (549)
T 2du7_A 219 KLFSIDRCFRREQRED-RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQ 268 (549)
T ss_dssp EEEEEEEECCCCSSCS-SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGG
T ss_pred EEEEEeeEEecCCccc-CcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999998664 3 24889999999988764 566666666666654
No 94
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=77.67 E-value=10 Score=42.38 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=61.6
Q ss_pred eehhhhhcCCCCCCCCCCcEEEEEEEEEee--ec--CCCceeEEEEEEcCCCCceEEEEE-eCchh--hhccCCCCCcEE
Q 017368 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG--RE--QGKGSFAFLEVNDGSCPANLQVIV-DKDVA--DLGQLVPTGTCV 102 (373)
Q Consensus 30 ~~Ikdi~~~~~l~~~~igk~V~V~GWV~si--R~--~Gk~kl~FIdLRDgsg~~~IQvVv-~~~~~--~~~~~L~~esvV 102 (373)
+.|.+|.. ....|+|.|.|-.+ |. .|+ .+.-+.|.|.++. |.|.. ..+.. +....|+.|++|
T Consensus 8 ~~~~~~~~--------~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~td~~~~--~~~k~f~~~~~~~~~~~~~~~g~~~ 76 (1041)
T 3f2b_A 8 RRLETIVE--------EERRVVVQGYVFDAEVSELKSGR-TLLTMKITDYTNS--ILVKMFSRDKEDAELMSGVKKGMWV 76 (1041)
T ss_dssp BCGGGCCS--------CEEEEEEEEEEEEEEEEECTTSC-EEEEEEEECSSCE--EEEEEECSSHHHHHHHHTCCTTCEE
T ss_pred ccHHHhhc--------ccceEEEEEEEEEEEEEEccCCC-EEEEEEEEeCCCC--EEEEEeecccchHHHHhcCCCCCEE
Confidence 45667652 45689999999754 42 343 5777799999874 77643 33322 244679999999
Q ss_pred EEEEEeeCCCCCCccceEEEEeEEEEeec
Q 017368 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (373)
Q Consensus 103 ~V~G~v~~~~~~~~g~vEL~v~~i~VLs~ 131 (373)
.|.|.+....- .+++.+.+.+|..+.+
T Consensus 77 ~~~g~~~~d~~--~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 77 KVRGSVQNDTF--VRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEEEECC
T ss_pred EEEEEEEeccC--CcceEEEeeeeEEecc
Confidence 99999986542 4577788888876654
No 95
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=77.44 E-value=11 Score=32.67 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=50.1
Q ss_pred CcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEE
Q 017368 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (373)
Q Consensus 47 gk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i 126 (373)
=..|.++|-|-.. ..| . +.|+|+||. +-+---.+...-...++.|.+|.|.|.+.... .+-.|.+-++
T Consensus 58 ~s~VWmQG~VV~~-~~g--~---~~LdDgTG~--~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~s----~eP~i~AvKm 125 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRG--E---ARLRDPSGD--FSVRGLERVPRGRPCLVPGKYVMVMGVVQACS----PEPCLQAVKM 125 (150)
T ss_dssp CSEEEEEEEEEEE-ETT--E---EEEEETTEE--EEEECGGGSCCCSCCCSTTCEEEEEEEEEECS----SSCEEEEEEE
T ss_pred eEEEEEEeEEEEe-CCC--e---EEEECCCce--EEEeeccccCCCCcccCCCCEEEEEEEEEecC----CCceEEEEEe
Confidence 4579999999986 444 3 579999985 33321111111122478999999999988753 4677888888
Q ss_pred EEeecC
Q 017368 127 VDVGMV 132 (373)
Q Consensus 127 ~VLs~a 132 (373)
.-||..
T Consensus 126 ~DLS~~ 131 (150)
T 3mxn_B 126 TDLSDN 131 (150)
T ss_dssp EECCSC
T ss_pred eeCCCC
Confidence 777763
No 96
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=76.67 E-value=9.2 Score=36.57 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=53.2
Q ss_pred cEEEEEEEEEe---eecC--CCceeEEEEE------EcCCCC-----ceEEEEEeCchhh-hccCCCCCcEEEEEEEeeC
Q 017368 48 RQVRVGGWVKT---GREQ--GKGSFAFLEV------NDGSCP-----ANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKN 110 (373)
Q Consensus 48 k~V~V~GWV~s---iR~~--Gk~kl~FIdL------RDgsg~-----~~IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~ 110 (373)
..|.|.|+|.. +|.. |. .++-+.| +|..|. .-+.|++..+..+ ..+ |+.|+.|.|+|.+..
T Consensus 130 N~V~L~GrL~~dPelr~t~~G~-~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~ 207 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRYTPAGD-AVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVN 207 (301)
T ss_dssp EEEEEEEEECSCCEEEECTTCC-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECcCCEEEECCCCC-EEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEee
Confidence 35889999976 4543 32 3333333 122121 1388888876544 346 999999999999987
Q ss_pred CCC----C-CccceEEEEeEEEEeecC
Q 017368 111 PPE----G-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 111 ~~~----~-~~g~vEL~v~~i~VLs~a 132 (373)
+.- + ....+||++++|+.|...
T Consensus 208 ~~y~dkdG~~r~~~ev~a~~i~~l~~k 234 (301)
T 1se8_A 208 EGWTDKDGNKRNSTRVEATRVEALARG 234 (301)
T ss_dssp EECC------CEEEEEEEEEEEECCC-
T ss_pred eeEECCCCcEEEEEEEEEEEEEEeccC
Confidence 531 2 234699999999998753
No 97
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=75.96 E-value=6.8 Score=28.36 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHH
Q 017368 233 EAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE 277 (373)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (373)
.+....+++.|..|..||+++..-+.|+.++..|-..|...+.++
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~t 47 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKT 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999998888888873
No 98
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=75.78 E-value=11 Score=33.16 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred CcEEEEEEEEEe---eecCCCc-eeEEEEE------EcC-CC-----CceEEEEEeCc-hhh-hccCCCCCcEEEEEEEe
Q 017368 47 GRQVRVGGWVKT---GREQGKG-SFAFLEV------NDG-SC-----PANLQVIVDKD-VAD-LGQLVPTGTCVYVEGML 108 (373)
Q Consensus 47 gk~V~V~GWV~s---iR~~Gk~-kl~FIdL------RDg-sg-----~~~IQvVv~~~-~~~-~~~~L~~esvV~V~G~v 108 (373)
-..|.|.|+|.. +|....+ .++-+.| +|. +| ..-+.|++..+ ..+ ..+.|+.|+.|.|+|.+
T Consensus 23 mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL 102 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKL 102 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 357899999965 4543221 2332222 111 11 11388888876 433 34569999999999999
Q ss_pred eCCCC----C-CccceEEEE----eEEEEeecC
Q 017368 109 KNPPE----G-TKQKIELRV----QKVVDVGMV 132 (373)
Q Consensus 109 ~~~~~----~-~~g~vEL~v----~~i~VLs~a 132 (373)
..+.- | ....+||.+ .+|..|+..
T Consensus 103 ~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 103 QTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 87532 2 345688887 578888754
No 99
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=75.58 E-value=12 Score=32.20 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=58.7
Q ss_pred cceehhhhhcCCCCCCCCCCcEEEEEEEEEeee----------cCC-------CceeEEEEEEcCCCCceEEEEEeCchh
Q 017368 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR----------EQG-------KGSFAFLEVNDGSCPANLQVIVDKDVA 90 (373)
Q Consensus 28 ~r~~Ikdi~~~~~l~~~~igk~V~V~GWV~siR----------~~G-------k~kl~FIdLRDgsg~~~IQvVv~~~~~ 90 (373)
.-+.|+||.. ..+.|.|.|+|-++- ..| ...++=+.|-|.||. |-+++..+.
T Consensus 15 ~~~kI~dL~p--------g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~- 83 (145)
T 1wjj_A 15 VFVKVEQLKP--------GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ- 83 (145)
T ss_dssp SSCCSTTCCT--------TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH-
T ss_pred cceEHHHcCC--------CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC-
Confidence 3456777752 234577888875542 112 225777889999986 888887753
Q ss_pred hhccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecC
Q 017368 91 DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 91 ~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a 132 (373)
...++.|++|.+.+-...-- .|.++|.+.+.--|.+.
T Consensus 84 --~~~l~~Gd~v~i~na~v~~~---~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 --VDLMKPGATVILRNSRIDMF---KGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp --HHHTCTTCEEEEEEEEEEEE---TTEEEEEECTTCCBCCC
T ss_pred --cCcCCCCCEEEEeccEEEeE---CCEEEEEECCCEEEEEC
Confidence 34478999999987544332 57899999765444444
No 100
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=75.51 E-value=7.4 Score=36.20 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=53.2
Q ss_pred cEEEEEEEEEe---eecC--CCceeEEEEE-Ec---------CCCCceEEEEEeCchhh-hccCCCCCcEEEEEEEeeCC
Q 017368 48 RQVRVGGWVKT---GREQ--GKGSFAFLEV-ND---------GSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNP 111 (373)
Q Consensus 48 k~V~V~GWV~s---iR~~--Gk~kl~FIdL-RD---------gsg~~~IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~ 111 (373)
..|.|.|+|.. +|.. |+ .++-+.| .+ .+.+ +.|++..+... .. .|+.|+.|.|+|.+..+
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~-~v~~f~lAv~~~~~g~~~~~t~~--~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGT-AVVRLGLAVNERRRGQEEERTHF--LEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCC-EEEEEEEEEECCC-------EEE--EEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCC-EEEEEEEEEcCCcCCCCccccEE--EEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 57899999976 4543 32 3343333 11 2223 88888766543 34 89999999999999774
Q ss_pred C----CC-CccceEEEEeEEEEeecC
Q 017368 112 P----EG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 112 ~----~~-~~g~vEL~v~~i~VLs~a 132 (373)
. .| ....+||.+++|..|...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EEECCCCCEEEEEEEEEEEEEECccc
Confidence 3 22 234589999999888753
No 101
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=74.00 E-value=3.6 Score=43.58 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHh
Q 017368 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVF 370 (373)
Q Consensus 322 ~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~ 370 (373)
-++|++|.|||.+..-...|+.||.|++.-++. +++.|+.-.+..++..
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999997653123588999999988876 3566666666666553
No 102
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=73.60 E-value=3.7 Score=43.57 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHh
Q 017368 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVF 370 (373)
Q Consensus 322 ~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~ 370 (373)
-++|++|.|||.+..-...|+.||.|++.-++. +++.|+.-.+..++..
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999998653123588999999988876 3566666666666553
No 103
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=73.26 E-value=3.8 Score=43.60 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHh
Q 017368 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVF 370 (373)
Q Consensus 322 ~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~ 370 (373)
-++|++|.|||.+..-...|+.||.|++.-++. +++.|+.-.+..++..
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999998653123588999999988876 3566666666666553
No 104
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=72.49 E-value=4.1 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEecceecCCCCCCCCcCccccceeeecC--CCHHHHHHHHHHHHHh
Q 017368 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKVRWTYTAHCLVF 370 (373)
Q Consensus 322 ~~vy~~~p~fRaE~~~t~rhl~EF~~le~e~~~--~~~~~~~~~~~~~~~~ 370 (373)
-++|++|.|||.+..-...|+.||.|++.-++. +++.|+.-.+..++..
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999997653123588999999988876 3566666666666553
No 105
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=71.83 E-value=26 Score=37.90 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEecCeeecCC
Q 017368 169 RNALAYATHTFLQKQGFLYIHTPIITTSD 197 (373)
Q Consensus 169 RS~i~~~iR~fL~~~gFiEV~TPiLt~~~ 197 (373)
...+...+|++|...||.|+-|..++...
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~ 523 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKD 523 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHH
Confidence 44567789999999999999999888653
No 106
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=71.27 E-value=26 Score=29.97 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=54.6
Q ss_pred CCCCcEEEEEEEEE--eeecC-CCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceE
Q 017368 44 GLAGRQVRVGGWVK--TGREQ-GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (373)
Q Consensus 44 ~~igk~V~V~GWV~--siR~~-Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vE 120 (373)
...|+.++|.|.|. ++... ....+.|. |.|+.. .|.|++..-.. .+.+.|.-|.|+|.+.... -
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~--~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g-------~ 91 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAEG--SVDVSYEGILP---DLFREGQGVVVQGELEKGN-------H 91 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSSC--EEEEEEESCCC---TTCCTTSEEEEEEEECSSS-------E
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCCc--EEEEEECCCCC---ccccCCCeEEEEEEECCCC-------e
Confidence 46789999999998 45432 22257875 789754 59999887543 3457899999999996421 2
Q ss_pred EEEeEEEEeecCCCCCC
Q 017368 121 LRVQKVVDVGMVDPAKY 137 (373)
Q Consensus 121 L~v~~i~VLs~a~~~~~ 137 (373)
+.+++ ||.+|+ ..|
T Consensus 92 F~A~e--VLAKhd-ekY 105 (136)
T 1sr3_A 92 ILAKE--VLAKHD-ENY 105 (136)
T ss_dssp EEESS--CBCCSC-CCC
T ss_pred EEEEE--EEecCC-CCC
Confidence 56654 788997 444
No 107
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=69.23 E-value=4.2 Score=34.24 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=38.4
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC----CC-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+. .+ ....+||.+++|..|...
T Consensus 51 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 88888765533 345589999999999998743 12 224589999999998754
No 108
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=67.61 E-value=12 Score=30.17 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=32.3
Q ss_pred EEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEE
Q 017368 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (373)
Q Consensus 81 IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~ 127 (373)
|+||+..+..+....+..|+-|.|+|.+..+.. ....+=++++.++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs~-~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKHR-SSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC-----CEEEEEEEEE
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCcC-CCCeeEEEEeccc
Confidence 899998876554445789999999999997642 2345667777664
No 109
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=66.16 E-value=7.5 Score=33.57 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCCC----C-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~~----~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+.- | ....+||.+++|..|...
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 88888765533 3456899999999999987541 2 345689999999999754
No 110
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=64.89 E-value=19 Score=30.56 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=38.7
Q ss_pred EEEEEeCchhhh-ccCCCCCcEEEEEEEeeCCCCC-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVADL-GQLVPTGTCVYVEGMLKNPPEG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~~-~~~L~~esvV~V~G~v~~~~~~-~~g~vEL~v~~i~VLs~a 132 (373)
++||+..+..+. .+-|+.|+-|.|+|.+..+... ....+.+++++|+.|+..
T Consensus 67 i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 889988776443 4568999999999999876421 123577899999998754
No 111
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.81 E-value=15 Score=28.46 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=46.4
Q ss_pred CCCChhhHHHHHHHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHh
Q 017368 225 PPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEE 278 (373)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (373)
|.+...+.++....+.+.|+.|..||.++..-+.|+..+..|-.-|......+.
T Consensus 8 ~~~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg 61 (79)
T 2djv_A 8 TTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEG 61 (79)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcC
Confidence 334456778899999999999999999999999999999999988888777754
No 112
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=63.26 E-value=60 Score=26.41 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=45.9
Q ss_pred CcEEEEEEEEEee---e--cCCCceeEEEEE---E--cCCCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeC-C----
Q 017368 47 GRQVRVGGWVKTG---R--EQGKGSFAFLEV---N--DGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN-P---- 111 (373)
Q Consensus 47 gk~V~V~GWV~si---R--~~Gk~kl~FIdL---R--Dgsg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~-~---- 111 (373)
+..|.|.|+|.+= | ..|. .++=+.| | +.+. -|-|++.....+.. .+..|+-|.|+|.+.. +
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~-~v~~f~lAV~R~~~~~D--fi~ivvw~klAe~~-~~~kG~~v~v~G~lrsy~~~~~ 86 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGE-KFFNFILEVPRLSETKD--YLPITISNRLFEGM-NLEVGTRVKIEGQLRSYNRKSP 86 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTE-EEEEEEEEEECTTSCEE--EEEEEEEGGGSTTC-CCCTTCEEEEEEEEEEEECC--
T ss_pred CCEEEEEEEECCCceEEEecCCc-EEEEEEEEeCCCCCCCc--EEEEEEEhHHhhHH-hhcCCCEEEEEEEEEecceEEC
Confidence 5678899998432 1 1332 1211111 1 2222 27777766543322 2568999999999963 2
Q ss_pred CCC-CccceEEEEeEEEEee
Q 017368 112 PEG-TKQKIELRVQKVVDVG 130 (373)
Q Consensus 112 ~~~-~~g~vEL~v~~i~VLs 130 (373)
++| ...-+||.+.+++.|.
T Consensus 87 ~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 87 EEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp ------EEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEEEEEEEcc
Confidence 122 3456999999998875
No 113
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=62.41 E-value=11 Score=30.81 Aligned_cols=78 Identities=23% Similarity=0.178 Sum_probs=48.2
Q ss_pred cEEEEEEEEEe---eecCCCc--eeEEEEE-----E--cCCCCceEEEEEeCchhhh-ccCCCCCcEEEEEEEeeCCCC-
Q 017368 48 RQVRVGGWVKT---GREQGKG--SFAFLEV-----N--DGSCPANLQVIVDKDVADL-GQLVPTGTCVYVEGMLKNPPE- 113 (373)
Q Consensus 48 k~V~V~GWV~s---iR~~Gk~--kl~FIdL-----R--Dgsg~~~IQvVv~~~~~~~-~~~L~~esvV~V~G~v~~~~~- 113 (373)
..|.|.|+|.. +|-..++ .++=+.| + |.+.+ +.|++..+..+. .+-|+.||-|.|+|.+..+.-
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~f--i~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPAR--LKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEE--EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEE--EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 46888888854 4543321 2332222 1 12333 889988776443 456899999999999986542
Q ss_pred ---C-CccceEEEEeEEE
Q 017368 114 ---G-TKQKIELRVQKVV 127 (373)
Q Consensus 114 ---~-~~g~vEL~v~~i~ 127 (373)
| .....||.+++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 2 3456889888764
No 114
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=60.62 E-value=9.5 Score=31.79 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred EEEEEeCc-hhh-hccCCCCCcEEEEEEEeeCCCC----C-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKD-VAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~-~~~-~~~~L~~esvV~V~G~v~~~~~----~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++-.+ ..+ ..+.|+.|+.|.|+|.+..+.- | ....+||.+++|..|+..
T Consensus 69 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77777773 433 3456999999999999987531 2 235699999999998764
No 115
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=59.96 E-value=33 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 170 S~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
..+...+|+.|...||.||-|-.+++.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~ 33 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAG 33 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEG
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCH
Confidence 356778999999999999999999864
No 116
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=59.68 E-value=13 Score=33.56 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=35.9
Q ss_pred EEEEEeCc-hhhh-ccCCCCCcEEEEEEEeeCCC----CC-CccceEEEEe----EEEEeecC
Q 017368 81 LQVIVDKD-VADL-GQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQ----KVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~-~~~~-~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~----~i~VLs~a 132 (373)
+.|++..+ ..+. .+.|+.|+.|.|+|.+..+. ++ ....+||.++ +|..|...
T Consensus 76 i~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 76 HNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 88888774 4333 35689999999999998643 12 2356888888 57777653
No 117
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=56.54 E-value=41 Score=29.91 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 170 S~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
..+...+|+.|...||.||-|-.+++.
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~ 33 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRA 33 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECG
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCH
Confidence 356778999999999999999999864
No 118
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=53.45 E-value=35 Score=27.68 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEEEEEeeecCC--CceeEEE-EEEcCCCCce--EEEEEeCchhhhccCCCCCcEEEEEEEeeCCC
Q 017368 43 AGLAGRQVRVGGWVKTGREQG--KGSFAFL-EVNDGSCPAN--LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (373)
Q Consensus 43 ~~~igk~V~V~GWV~siR~~G--k~kl~FI-dLRDgsg~~~--IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~ 112 (373)
.++.|+-|+++|-|-.+|+.. .+...|| .+||...... +-.-+........+.|..|++-.|.|.|...+
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvealsngsvativgqvhqvq 119 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTTCCTTSEEEEEEECCCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHhhcCCceeeEeeeeeeee
Confidence 467899999999999997653 1234454 5677643211 22222221112346789999999999998765
No 119
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=52.29 E-value=19 Score=33.30 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=37.8
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCCC---C-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~~---~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+.- | ....+||.+++|..|...
T Consensus 54 ~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 78888776543 3456899999999999986531 2 234589999999998754
No 120
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=51.86 E-value=16 Score=30.02 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=36.8
Q ss_pred EEEEEeC-chhh-hccCCCCCcEEEEEEEeeCCC------CC-CccceEEEEe----EEEEeecC
Q 017368 81 LQVIVDK-DVAD-LGQLVPTGTCVYVEGMLKNPP------EG-TKQKIELRVQ----KVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~-~~~~-~~~~L~~esvV~V~G~v~~~~------~~-~~g~vEL~v~----~i~VLs~a 132 (373)
+.|++-. ...+ ..+.|+.|+.|.|+|.+..+. .| ....+||.++ +++.|+..
T Consensus 56 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k 120 (124)
T 3ulp_A 56 HRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDK 120 (124)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC--
T ss_pred EEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCc
Confidence 8888887 5443 345689999999999998532 23 2356899997 88888753
No 121
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=51.44 E-value=74 Score=25.30 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=51.9
Q ss_pred CCCCcEEEEEEEEE--eeecC--CCceeEEEEEEcC--CCCceEEEEEeCchhhhccCCCCCcEEEEEEEeeCCCCCCcc
Q 017368 44 GLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVNDG--SCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (373)
Q Consensus 44 ~~igk~V~V~GWV~--siR~~--Gk~kl~FIdLRDg--sg~~~IQvVv~~~~~~~~~~L~~esvV~V~G~v~~~~~~~~g 117 (373)
...++.++|.|-|. ++.+. +. .+.|. |.|+ .+ ..|.|++..-.. ...+-|.-|.++|.+..-. |
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~-~v~F~-vtD~~~~~-~~v~V~Y~GilP---DlFrEGqgVV~~G~l~~~~----g 74 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAP-GVRFR-LEDKDNTS-KTVWVLYKGAVP---DTFKPGVEVIIEGGLAPGE----D 74 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSS-EEEEE-EECSSCTT-CEEEEEEESCCC---TTCCTTCEEEEEEEECTTC----S
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCC-EEEEE-EEcCCCCC-cEEEEEECCCCC---ccccCCCeEEEEEEEeCCC----C
Confidence 34689999999996 34333 32 68875 7886 12 369999887543 3467899999999996411 1
Q ss_pred ceEEEEeEEEEeecCC
Q 017368 118 KIELRVQKVVDVGMVD 133 (373)
Q Consensus 118 ~vEL~v~~i~VLs~a~ 133 (373)
.+.++ +||.+|+
T Consensus 75 --~F~A~--evLaKh~ 86 (94)
T 2kct_A 75 --TFKAR--TLMTKCP 86 (94)
T ss_dssp --EEEEE--EEEESSC
T ss_pred --EEEEe--EEEEeCC
Confidence 25666 4788886
No 122
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=49.49 E-value=24 Score=31.94 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=34.8
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCCC----C-CccceEEEEeEEEE
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVD 128 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~~----~-~~g~vEL~v~~i~V 128 (373)
+.|++-.+..+ ..+.|+.|+.|.|+|.|..+.- + +...+||.|++|.+
T Consensus 55 i~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 88888776543 3456999999999999987542 1 34578999988753
No 123
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=48.92 E-value=6.7 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=37.8
Q ss_pred eEEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC----CC-CccceEE---EEeEEEEeecC
Q 017368 80 NLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIEL---RVQKVVDVGMV 132 (373)
Q Consensus 80 ~IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL---~v~~i~VLs~a 132 (373)
-+.|++..+..+ ..+.|+.|+.|.|+|.+..+. ++ ....+|| ++.+|..|...
T Consensus 54 ~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 54 WHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 388988876543 345689999999999998743 12 2245788 77888887654
No 124
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=46.07 E-value=1.1e+02 Score=33.00 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEecCeeecC
Q 017368 168 IRNALAYATHTFLQKQGFLYIHTPIITTS 196 (373)
Q Consensus 168 iRS~i~~~iR~fL~~~gFiEV~TPiLt~~ 196 (373)
-...+...+|++|...||.|+-|-.++..
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~ 518 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDP 518 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECT
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCH
Confidence 35567888999999999999998888755
No 125
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=44.73 E-value=16 Score=34.97 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=38.5
Q ss_pred EEEEEeCchhh-hccC-CCCCcEEEEEEEeeCCC----CC-CccceEEEEeEEEEeecC
Q 017368 81 LQVIVDKDVAD-LGQL-VPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~-L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~~i~VLs~a 132 (373)
+.|++..+..+ ..+. |+.|+.|.|+|.+..+. ++ ....+||++++|..|...
T Consensus 54 i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 54 HRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 88888876543 3466 89999999999998642 12 234589999999998754
No 126
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=44.26 E-value=66 Score=23.91 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.3
Q ss_pred EEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhh--hccCCCCCcEEEEE
Q 017368 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (373)
Q Consensus 52 V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~--~~~~L~~esvV~V~ 105 (373)
+.|.|.++...| +|++|.++ +...+...... +.+.++.||.|.|.
T Consensus 9 v~G~V~~v~~~G----~fV~l~~~-----~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 9 YKGVVTRIEKYG----AFINLNEQ-----VRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp EEEEEEEEETTE----EEEEEETT-----EEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred EEEEEEEEeCCE----EEEEECCC-----CEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 789999999877 79999763 66666544321 12458899998875
No 127
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=43.51 E-value=16 Score=26.81 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=33.9
Q ss_pred HHHHhhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 017368 237 LVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (373)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (373)
..+++.|+.|..||+++..-+.|+.+++.|-..|.....+
T Consensus 4 ~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~~ 43 (59)
T 1d2d_A 4 DKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEK 43 (59)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999998777655544
No 128
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=38.99 E-value=86 Score=25.77 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=34.3
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh--h----hccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~--~----~~~~L~~esvV~V~ 105 (373)
+|+ .+.|.|.++...| +||+|.++ ++.++..... . ....++.||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G----~FV~l~~~-----~~Glihisel~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG----AFVALDEE-----TQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEEETT-----EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe----EEEEECCC-----cEEEEEHHHCCcccccCccccCCCCCEEEEE
Confidence 455 3689999998877 89999653 7777764331 1 12458899998875
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=38.82 E-value=18 Score=38.95 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.8
Q ss_pred CCCcEEEEEEEEEeeec--CCCceeEEEEEEcCCCCceEEEEEeCchhhhccCCCC--CcEEEEEEEeeCCCCCCccceE
Q 017368 45 LAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPT--GTCVYVEGMLKNPPEGTKQKIE 120 (373)
Q Consensus 45 ~igk~V~V~GWV~siR~--~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L~~--esvV~V~G~v~~~~~~~~g~vE 120 (373)
..|+.|+|.|.|.+... .|+.+..=+.+.|++|. +++++-.... ..+.++. |..+.|.|++...+ ..+.++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~~~-~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~ 237 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQDY-LQTYLKQLTGKEVFVTGTVKSNA--YTGQYE 237 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCCT-THHHHHTTCSSCEEEEEEECSCC--TTSSCC
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECcHH-HHhhCccCCCCEEEEEEEEEEcc--CCCcEE
Confidence 45889999999987632 23224555778999985 9998755321 1244677 99999999997631 013456
Q ss_pred EEEeEEEEe
Q 017368 121 LRVQKVVDV 129 (373)
Q Consensus 121 L~v~~i~VL 129 (373)
+.--++.+.
T Consensus 238 ~~~p~~~~~ 246 (780)
T 1gm5_A 238 IHNAEVTPK 246 (780)
T ss_dssp EEEEEEECS
T ss_pred EEcCEEeec
Confidence 666666544
No 130
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=38.77 E-value=1.5e+02 Score=27.57 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCcEEEEEEEEEeeec----CCCceeEEEEEEcCCCCceEEEEEeCchhhhccCC-CCCcEEEEEEEeeCC
Q 017368 46 AGRQVRVGGWVKTGRE----QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV-PTGTCVYVEGMLKNP 111 (373)
Q Consensus 46 igk~V~V~GWV~siR~----~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~~~~~L-~~esvV~V~G~v~~~ 111 (373)
.|+.|-|.|.|...+. .|++-++-+.|.|.+.. .|+|.+-.+..+....+ ..||+|.+...-...
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~-gl~v~iF~~~~~~LP~v~~~GDII~l~~vki~~ 83 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV-KLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQV 83 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC-EEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEE
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC-CEEEEEECCChHHCCCCCCCCCEEEEEEEEEEE
Confidence 4788999999976643 56567888999998754 58887654433333334 899999998766554
No 131
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=36.86 E-value=25 Score=30.61 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=32.3
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC----CC-CccceEEEEeEE
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKV 126 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~----~~-~~g~vEL~v~~i 126 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+. ++ ....+||.++.|
T Consensus 55 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 55 LRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 88888766533 346699999999999998753 12 234577777654
No 132
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=35.70 E-value=2.4e+02 Score=25.13 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=54.3
Q ss_pred ceehhhhhcCCCCCCCCCCcEEEEEEEEEee----ec-CCC-ceeEEEEEEcCCC---CceEEEEEeCchhhhccCC-CC
Q 017368 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG----RE-QGK-GSFAFLEVNDGSC---PANLQVIVDKDVADLGQLV-PT 98 (373)
Q Consensus 29 r~~Ikdi~~~~~l~~~~igk~V~V~GWV~si----R~-~Gk-~kl~FIdLRDgsg---~~~IQvVv~~~~~~~~~~L-~~ 98 (373)
-++|+++++ ....|+.|-|.|=|... |. .|. +-++-+.|-|.+. ...|.|.+-.+..+..-.+ ..
T Consensus 29 ~~~~r~~l~-----~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~ 103 (187)
T 1qzg_A 29 FQSIRSSQE-----LQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQV 103 (187)
T ss_dssp EECHHHHTS-----CCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCST
T ss_pred EEEHHHHHh-----hccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCC
Confidence 467788873 23458899999998543 33 453 4678889999871 1237776543322222233 78
Q ss_pred CcEEEEEEEeeCCCCCCccceEEEE
Q 017368 99 GTCVYVEGMLKNPPEGTKQKIELRV 123 (373)
Q Consensus 99 esvV~V~G~v~~~~~~~~g~vEL~v 123 (373)
||+|.+.....+.- .|.+.+..
T Consensus 104 GDIIlL~rvkiq~~---~g~~~~v~ 125 (187)
T 1qzg_A 104 GQPLLLHQITLRSY---RDRTQGLS 125 (187)
T ss_dssp TCEEEEEEEEEEEE---TTEEEEEE
T ss_pred CCEEEEEEEEEEEE---CCeEEEEE
Confidence 99999998766654 34444444
No 133
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=35.04 E-value=1.2e+02 Score=25.07 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCCceEEE-EEeCchhhh--ccCCCCCcEEEEEEEeeCCCCCCccceEEEEeEEEEeecC
Q 017368 67 FAFLEVNDGSCPANLQV-IVDKDVADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (373)
Q Consensus 67 l~FIdLRDgsg~~~IQv-Vv~~~~~~~--~~~L~~esvV~V~G~v~~~~~~~~g~vEL~v~~i~VLs~a 132 (373)
-.=+.|.||.. .+|. ++....... ...|..+++|.|.=.....- ..+.--|.+.+++|+.++
T Consensus 44 RyRl~lSDG~~--~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v--~~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 44 RYRLLMSDGLN--TLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTL--KDGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEEEECSSE--EEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEEC--SSSCEEEEEEEEEEEECS
T ss_pred eEEEEEECcch--heeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEe--cCCcEEEEEEeeEEeecc
Confidence 44477999875 4998 887665333 24589999999976544332 114567888999999874
No 134
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=30.30 E-value=9.1 Score=33.87 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=24.4
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCC
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP 112 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~ 112 (373)
+.|++..+..+ ..+.|+.|+.|.|+|.+..+.
T Consensus 56 i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r~ 88 (178)
T 1eqq_A 56 HRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRK 88 (178)
T ss_dssp EEEEECHHHHHHHHHHCCTTCEEEECCEEEEEE
T ss_pred EEEEEccHHHHHHHHhcCCCCEEEEEEEEEeee
Confidence 78888765533 345689999999999998753
No 135
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=29.24 E-value=90 Score=24.93 Aligned_cols=50 Identities=26% Similarity=0.433 Sum_probs=34.0
Q ss_pred CCCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchhh-------hccCCCCCcEEEEE
Q 017368 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-------LGQLVPTGTCVYVE 105 (373)
Q Consensus 45 ~igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~~-------~~~~L~~esvV~V~ 105 (373)
.+|+. +.|.|.++...| +|++|.++ +..++...... ....++.||.|.|.
T Consensus 29 ~~G~~--~~G~V~~v~~~G----~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGTK--LTGRVTNLTDYG----CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp CSSCE--EEEEEEEEETTE----EEEECSTT-----CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCE----EEEEECCC-----CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 34554 789999999987 79999542 66666543321 12357889988775
No 136
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=26.97 E-value=1.1e+02 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh--hh----ccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DL----GQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~--~~----~~~L~~esvV~V~ 105 (373)
+|+. +.|.|.++...| +|++|.+..+ +..++.-... .+ .+.++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG----aFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG----AYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE----EEEEETTTTT---EEEEEEGGGC------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE----EEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEE
Confidence 4444 689999999988 8999964433 6777654331 11 2346677777664
No 137
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.95 E-value=1.4e+02 Score=23.38 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh-h------hccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D------LGQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~-~------~~~~L~~esvV~V~ 105 (373)
+|+. +.|.|.++...| +|++|.+... .+...+.-... . ..+.++.||.|.|.
T Consensus 12 vG~i--~~G~V~~v~~fG----~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 12 IGDI--YNGKVTSIMQFG----CFVQLEGLRK--RWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp TTCE--EEEEEEEECSSC----EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE----EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 4554 679999999988 8999976211 15666654322 1 11347889988775
No 138
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=24.64 E-value=39 Score=28.09 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=32.4
Q ss_pred EEEEEeCchhh-hccCCCCCcEEEEEEEeeCCCC---C-CccceEEEEeEEE
Q 017368 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVV 127 (373)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~esvV~V~G~v~~~~~---~-~~g~vEL~v~~i~ 127 (373)
+.|++-.+..+ ..+.|+.|+-|.|+|.+..+.- + ....+||.++.|-
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg 116 (128)
T 4dam_A 65 FTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIG 116 (128)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEE
Confidence 77777765433 3456999999999999876532 2 2345777777653
No 139
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=24.07 E-value=57 Score=28.50 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=31.7
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh--h----hccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~--~----~~~~L~~esvV~V~ 105 (373)
+|+. +.|.|.++...| +|++|.+..+ +..++.-... . ..+.++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG----aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG----AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce----EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 4544 679999999988 8999943333 5565544321 1 12346778777665
No 140
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.53 E-value=1e+02 Score=24.72 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCch-hhh------ccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-ADL------GQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~-~~~------~~~L~~esvV~V~ 105 (373)
+|+. +.|.|.++...| +|++|..+ + +..+...+. .+| .+.++.||.|.|.
T Consensus 21 ~G~i--~~G~V~~v~~fG----~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 21 PGML--LTGTVSSLEDHG----YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp TTCE--EEEEEEEECSSE----EEEECCCS-S---CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCce----EEEEECCC-C---eEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 3444 679999999988 89999622 2 444444332 112 2458999999876
No 141
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=23 Score=28.94 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh------hhccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~------~~~~~L~~esvV~V~ 105 (373)
+|+. +.|.|.++...| +|++| ++.+ +...+..... +..+.++.|+.|.|.
T Consensus 22 vG~i--v~G~V~~I~~fG----aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~~~~Gd~V~Vk 77 (119)
T 2cqo_A 22 LYTI--FQGEVAMVTDYG----AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK 77 (119)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHHCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCce----EEEEE-CCCc---EEEEEEHHHCCcccccChhhcCCCCCEEEEE
Confidence 4544 679999999987 89999 4422 3444432221 112348899998875
No 142
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=22.30 E-value=3.6e+02 Score=24.94 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCce--------------------------EEEEEeCchhhhccCCCCC
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPAN--------------------------LQVIVDKDVADLGQLVPTG 99 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~--------------------------IQvVv~~~~~~~~~~L~~e 99 (373)
.++.+-|.+.|-.+-.... +...+-+-|+|+.+. +||.+-.+...+++.|+.|
T Consensus 153 ~~~f~DLv~qVv~v~~~~~-~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~~~~lk~G 231 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKAEVDG-ASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVG 231 (294)
T ss_dssp SSCEEEEEEEEEEEEECSS-SEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHHHHHCCTT
T ss_pred cCCeeeEEEEEEEEEecCC-CeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHHHhcCCCC
Confidence 4688889999986643322 356677999887643 5776655544445679999
Q ss_pred cEEEEEEEeeC
Q 017368 100 TCVYVEGMLKN 110 (373)
Q Consensus 100 svV~V~G~v~~ 110 (373)
|+|.+...-.+
T Consensus 232 d~V~l~Nv~~k 242 (294)
T 1xjv_A 232 SFLRIYSLHTK 242 (294)
T ss_dssp CEEEEEEEEEE
T ss_pred cEEEEeeeEEE
Confidence 99999876544
No 143
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.62 E-value=70 Score=25.25 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCcEEEEEEEEEeeecCCCceeEEEEEEcCCCCceEEEEEeCchh------hhccCCCCCcEEEEE
Q 017368 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (373)
Q Consensus 46 igk~V~V~GWV~siR~~Gk~kl~FIdLRDgsg~~~IQvVv~~~~~------~~~~~L~~esvV~V~ 105 (373)
.|+. +.|.|.++...| +|++|.++ +..++..... +..+.++.|+.|.|.
T Consensus 31 ~G~i--v~G~V~~v~~~G----~fV~l~~~-----~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 31 KGAI--VTGKVTAVDAKG----ATVELADG-----VEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp SSSE--EEEEEEEECSSC----EEEECSTT-----CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEECCe----EEEEECCC-----CEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 4554 779999998877 89999653 3333332221 112357889988765
No 144
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.38 E-value=2.1e+02 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.5
Q ss_pred ccCCCCCcEEEEEEEeeCCC
Q 017368 93 GQLVPTGTCVYVEGMLKNPP 112 (373)
Q Consensus 93 ~~~L~~esvV~V~G~v~~~~ 112 (373)
...+++||-|.|+|++...+
T Consensus 222 vd~~~PGDrV~vtGI~~~~~ 241 (268)
T 2vl6_A 222 VDSARPGDRVKVTGILDIKQ 241 (268)
T ss_dssp TTSSCTTCEEEEEEEEEEEC
T ss_pred cCcccCCCEEEEEEEEEEee
Confidence 45678999999999997755
Done!