Query 017369
Match_columns 372
No_of_seqs 383 out of 3605
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1975 mRNA cap methyltransfe 100.0 7.8E-58 1.7E-62 405.5 23.8 333 1-342 37-370 (389)
2 PF03291 Pox_MCEL: mRNA cappin 100.0 8.6E-53 1.9E-57 392.3 19.8 299 37-341 7-331 (331)
3 COG2226 UbiE Methylase involve 99.9 4.5E-24 9.8E-29 188.9 17.0 144 34-205 11-155 (238)
4 PF01209 Ubie_methyltran: ubiE 99.9 4.3E-24 9.2E-29 191.0 10.5 207 35-287 8-219 (233)
5 PLN02233 ubiquinone biosynthes 99.9 1.1E-20 2.3E-25 172.7 19.3 149 34-207 33-183 (261)
6 PLN02244 tocopherol O-methyltr 99.8 2E-19 4.4E-24 170.5 23.0 180 72-295 101-285 (340)
7 PLN02396 hexaprenyldihydroxybe 99.8 3.7E-19 8E-24 166.0 21.7 158 84-289 131-290 (322)
8 KOG1540 Ubiquinone biosynthesi 99.8 8.2E-20 1.8E-24 158.7 15.5 203 37-285 63-278 (296)
9 PRK11036 putative S-adenosyl-L 99.8 7.5E-20 1.6E-24 167.0 15.1 243 38-341 4-255 (255)
10 TIGR02752 MenG_heptapren 2-hep 99.8 5.1E-19 1.1E-23 159.2 18.4 145 34-206 5-151 (231)
11 PRK10258 biotin biosynthesis p 99.8 1.3E-18 2.8E-23 158.6 19.1 218 32-330 5-226 (251)
12 PTZ00098 phosphoethanolamine N 99.8 3.6E-18 7.8E-23 156.2 20.8 167 73-296 41-210 (263)
13 PRK05785 hypothetical protein; 99.8 1.5E-17 3.3E-22 148.7 15.5 131 34-200 9-141 (226)
14 PF13489 Methyltransf_23: Meth 99.8 6.6E-18 1.4E-22 142.9 11.9 141 82-286 20-161 (161)
15 PF12847 Methyltransf_18: Meth 99.8 8.4E-18 1.8E-22 133.6 11.8 109 84-207 1-112 (112)
16 COG2227 UbiG 2-polyprenyl-3-me 99.8 5E-18 1.1E-22 147.8 10.8 108 83-210 58-165 (243)
17 PF08241 Methyltransf_11: Meth 99.8 8.1E-18 1.7E-22 129.2 10.7 95 89-204 1-95 (95)
18 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.8E-17 8.3E-22 153.0 14.8 147 83-292 112-260 (340)
19 smart00828 PKS_MT Methyltransf 99.7 9.5E-17 2.1E-21 143.7 16.1 165 86-310 1-166 (224)
20 PRK00216 ubiE ubiquinone/menaq 99.7 3E-16 6.6E-21 141.6 18.2 146 33-205 10-157 (239)
21 PF02353 CMAS: Mycolic acid cy 99.7 3.9E-16 8.4E-21 142.8 19.0 172 72-296 50-225 (273)
22 PLN02336 phosphoethanolamine N 99.7 2.8E-16 6.1E-21 156.2 18.8 164 76-295 258-421 (475)
23 PRK14103 trans-aconitate 2-met 99.7 1.2E-16 2.5E-21 146.0 14.5 109 74-208 19-128 (255)
24 COG2230 Cfa Cyclopropane fatty 99.7 9E-17 2E-21 144.9 13.4 170 71-294 59-229 (283)
25 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2.5E-16 5.4E-21 140.6 15.8 139 38-206 3-143 (223)
26 PRK15068 tRNA mo(5)U34 methylt 99.7 1.5E-16 3.3E-21 149.4 14.4 109 80-206 118-226 (322)
27 PRK15451 tRNA cmo(5)U34 methyl 99.7 2E-16 4.3E-21 143.7 14.3 109 81-206 53-164 (247)
28 PF07021 MetW: Methionine bios 99.7 4.7E-16 1E-20 131.8 15.0 159 81-290 10-169 (193)
29 PF13847 Methyltransf_31: Meth 99.7 2.3E-16 5E-21 132.5 12.9 109 83-208 2-112 (152)
30 TIGR00452 methyltransferase, p 99.7 2.4E-16 5.3E-21 146.5 14.0 111 79-207 116-226 (314)
31 TIGR00740 methyltransferase, p 99.7 8.5E-16 1.9E-20 138.9 15.6 110 81-207 50-162 (239)
32 PRK11207 tellurite resistance 99.7 1.1E-15 2.4E-20 133.9 13.7 105 82-204 28-132 (197)
33 PRK01683 trans-aconitate 2-met 99.7 8.1E-16 1.8E-20 140.7 12.2 112 73-208 20-132 (258)
34 PF13649 Methyltransf_25: Meth 99.7 3.9E-16 8.5E-21 121.8 8.3 96 88-200 1-101 (101)
35 PRK11705 cyclopropane fatty ac 99.6 2.5E-15 5.5E-20 144.2 15.3 166 73-297 156-321 (383)
36 TIGR00477 tehB tellurite resis 99.6 4.1E-15 8.8E-20 130.1 13.4 105 82-205 28-132 (195)
37 TIGR02021 BchM-ChlM magnesium 99.6 2.5E-14 5.5E-19 127.6 18.6 166 72-291 41-209 (219)
38 PRK06202 hypothetical protein; 99.6 1.4E-14 3E-19 130.4 16.3 102 83-204 59-165 (232)
39 TIGR02072 BioC biotin biosynth 99.6 4.1E-15 8.9E-20 134.2 12.6 106 83-210 33-139 (240)
40 KOG1270 Methyltransferases [Co 99.6 1E-15 2.2E-20 134.3 8.0 110 85-210 90-199 (282)
41 PRK11873 arsM arsenite S-adeno 99.6 2.6E-14 5.6E-19 131.8 16.1 108 81-206 74-183 (272)
42 PLN02585 magnesium protoporphy 99.6 4.6E-14 9.9E-19 131.5 17.6 155 84-287 144-298 (315)
43 TIGR03438 probable methyltrans 99.6 1.1E-13 2.3E-18 129.2 20.2 154 28-206 19-177 (301)
44 PRK05134 bifunctional 3-demeth 99.6 4.1E-14 8.9E-19 127.4 16.8 146 36-209 8-154 (233)
45 TIGR03587 Pse_Me-ase pseudamin 99.6 2.5E-14 5.4E-19 125.8 13.6 101 82-206 41-142 (204)
46 PRK06922 hypothetical protein; 99.6 1.8E-14 3.8E-19 143.1 13.7 109 83-206 417-537 (677)
47 PRK08317 hypothetical protein; 99.6 4.8E-14 1E-18 127.1 14.0 116 74-208 9-126 (241)
48 PRK12335 tellurite resistance 99.6 4E-14 8.6E-19 131.4 13.8 104 84-206 120-223 (287)
49 PF08242 Methyltransf_12: Meth 99.6 8.2E-16 1.8E-20 119.4 2.0 98 89-202 1-99 (99)
50 PF03848 TehB: Tellurite resis 99.6 3.9E-14 8.5E-19 121.8 11.7 106 82-206 28-133 (192)
51 PF05401 NodS: Nodulation prot 99.6 6.3E-14 1.4E-18 119.1 12.5 109 80-207 39-147 (201)
52 COG4106 Tam Trans-aconitate me 99.5 1.4E-14 3.1E-19 123.3 8.4 110 76-209 22-132 (257)
53 TIGR03840 TMPT_Se_Te thiopurin 99.5 1.2E-13 2.6E-18 122.0 14.7 130 70-206 20-152 (213)
54 KOG4300 Predicted methyltransf 99.5 2.1E-14 4.6E-19 121.3 8.8 104 85-206 77-182 (252)
55 smart00138 MeTrc Methyltransfe 99.5 3.4E-14 7.3E-19 129.9 11.0 117 83-206 98-242 (264)
56 PRK07580 Mg-protoporphyrin IX 99.5 5.1E-13 1.1E-17 120.0 18.3 157 82-291 61-217 (230)
57 PRK00107 gidB 16S rRNA methylt 99.5 1.9E-13 4E-18 118.2 14.7 120 76-218 37-158 (187)
58 COG4976 Predicted methyltransf 99.5 8.8E-15 1.9E-19 125.5 6.2 187 22-287 78-264 (287)
59 PRK11088 rrmA 23S rRNA methylt 99.5 9.1E-14 2E-18 128.1 13.1 102 82-213 83-188 (272)
60 PRK13255 thiopurine S-methyltr 99.5 2.6E-13 5.6E-18 120.4 15.4 130 68-204 21-153 (218)
61 TIGR02081 metW methionine bios 99.5 2E-13 4.4E-18 119.4 14.4 156 83-290 12-169 (194)
62 PRK00121 trmB tRNA (guanine-N( 99.5 9.3E-14 2E-18 122.2 12.3 118 83-214 39-164 (202)
63 TIGR01983 UbiG ubiquinone bios 99.5 4.4E-13 9.5E-18 119.9 16.6 121 71-209 31-152 (224)
64 TIGR02469 CbiT precorrin-6Y C5 99.5 3.7E-13 7.9E-18 108.6 14.1 110 76-206 11-122 (124)
65 PRK04266 fibrillarin; Provisio 99.5 2.9E-13 6.4E-18 120.5 14.8 111 79-208 67-178 (226)
66 TIGR00138 gidB 16S rRNA methyl 99.5 8E-13 1.7E-17 114.0 17.0 100 84-206 42-142 (181)
67 PF08003 Methyltransf_9: Prote 99.5 4.6E-13 1E-17 121.1 15.2 155 82-290 113-269 (315)
68 TIGR02716 C20_methyl_CrtF C-20 99.5 2.6E-13 5.6E-18 127.3 13.6 113 76-206 141-254 (306)
69 PLN03075 nicotianamine synthas 99.5 3.7E-13 8.1E-18 123.0 13.5 112 83-209 122-236 (296)
70 PRK13944 protein-L-isoaspartat 99.5 5.3E-13 1.1E-17 117.7 13.9 112 73-207 61-174 (205)
71 KOG1271 Methyltransferases [Ge 99.5 4.3E-13 9.3E-18 111.2 11.5 130 67-209 49-184 (227)
72 PLN02336 phosphoethanolamine N 99.5 6E-13 1.3E-17 132.4 15.0 106 81-205 34-141 (475)
73 KOG2361 Predicted methyltransf 99.5 1.3E-12 2.7E-17 113.4 14.8 177 69-286 53-235 (264)
74 TIGR00537 hemK_rel_arch HemK-r 99.5 1.8E-12 4E-17 111.9 15.3 106 83-206 18-140 (179)
75 PF13659 Methyltransf_26: Meth 99.5 2.9E-13 6.4E-18 108.2 9.3 113 85-208 1-117 (117)
76 PRK08287 cobalt-precorrin-6Y C 99.5 2.4E-12 5.3E-17 111.9 15.4 106 78-206 25-131 (187)
77 PF05175 MTS: Methyltransferas 99.4 1.3E-12 2.8E-17 111.8 13.0 109 84-207 31-141 (170)
78 TIGR00091 tRNA (guanine-N(7)-) 99.4 8.8E-13 1.9E-17 115.3 12.0 119 83-212 15-138 (194)
79 PRK14121 tRNA (guanine-N(7)-)- 99.4 4E-12 8.6E-17 120.5 15.4 165 36-215 74-244 (390)
80 PRK13942 protein-L-isoaspartat 99.4 2.8E-12 6E-17 113.7 13.4 110 73-206 65-176 (212)
81 PRK00377 cbiT cobalt-precorrin 99.4 6.4E-12 1.4E-16 110.3 15.4 116 78-212 34-151 (198)
82 PTZ00146 fibrillarin; Provisio 99.4 1.7E-12 3.6E-17 118.3 11.9 108 79-206 127-237 (293)
83 TIGR00080 pimt protein-L-isoas 99.4 3.3E-12 7.2E-17 113.6 13.1 111 73-207 66-178 (215)
84 TIGR00406 prmA ribosomal prote 99.4 4.6E-12 9.9E-17 117.6 14.3 106 82-209 157-262 (288)
85 PRK00517 prmA ribosomal protei 99.4 8.2E-12 1.8E-16 113.6 15.5 97 82-206 117-213 (250)
86 KOG1541 Predicted protein carb 99.4 4.9E-12 1.1E-16 108.1 12.9 124 73-216 37-171 (270)
87 KOG2940 Predicted methyltransf 99.4 5.2E-13 1.1E-17 114.6 6.8 232 84-371 72-323 (325)
88 PRK15001 SAM-dependent 23S rib 99.4 1E-11 2.2E-16 118.3 16.1 118 78-207 222-341 (378)
89 PF05891 Methyltransf_PK: AdoM 99.4 1.8E-11 3.9E-16 106.0 15.9 146 84-287 55-200 (218)
90 PRK14967 putative methyltransf 99.4 1.1E-11 2.4E-16 110.9 14.9 126 76-217 28-173 (223)
91 PRK14968 putative methyltransf 99.4 2.1E-11 4.5E-16 105.9 16.1 110 83-207 22-149 (188)
92 PRK13256 thiopurine S-methyltr 99.4 1.1E-11 2.4E-16 109.6 14.1 135 67-206 26-163 (226)
93 PRK11188 rrmJ 23S rRNA methylt 99.4 1E-11 2.3E-16 109.6 13.9 109 82-211 49-170 (209)
94 TIGR01177 conserved hypothetic 99.4 6.3E-12 1.4E-16 118.9 13.3 129 71-214 168-302 (329)
95 TIGR03533 L3_gln_methyl protei 99.4 2.9E-11 6.3E-16 111.8 16.3 114 83-210 120-255 (284)
96 PRK09489 rsmC 16S ribosomal RN 99.3 1.9E-11 4.2E-16 115.6 15.0 109 83-208 195-305 (342)
97 PLN02232 ubiquinone biosynthes 99.3 2.2E-12 4.8E-17 109.2 7.6 81 111-206 1-81 (160)
98 KOG3010 Methyltransferase [Gen 99.3 2.3E-12 5E-17 111.9 7.2 129 39-203 4-134 (261)
99 TIGR03534 RF_mod_PrmC protein- 99.3 4.8E-11 1E-15 108.6 16.3 109 83-206 86-217 (251)
100 COG2264 PrmA Ribosomal protein 99.3 1.4E-11 2.9E-16 112.4 11.2 104 82-206 160-263 (300)
101 PRK00312 pcm protein-L-isoaspa 99.3 4.3E-11 9.3E-16 106.2 13.7 107 76-207 70-176 (212)
102 PF05724 TPMT: Thiopurine S-me 99.3 4.1E-11 8.9E-16 106.1 13.2 131 66-203 19-152 (218)
103 PRK11805 N5-glutamine S-adenos 99.3 8.7E-11 1.9E-15 109.7 16.0 111 86-210 135-267 (307)
104 cd02440 AdoMet_MTases S-adenos 99.3 5.4E-11 1.2E-15 91.6 11.6 103 87-205 1-103 (107)
105 PRK07402 precorrin-6B methylas 99.3 1.2E-10 2.6E-15 102.0 15.0 114 78-212 34-148 (196)
106 PF06325 PrmA: Ribosomal prote 99.3 2.1E-11 4.5E-16 112.3 10.6 102 81-206 158-259 (295)
107 TIGR00536 hemK_fam HemK family 99.3 8.4E-11 1.8E-15 109.0 14.7 110 86-209 116-247 (284)
108 PF06080 DUF938: Protein of un 99.3 1.2E-10 2.7E-15 100.3 14.1 122 76-207 17-142 (204)
109 PRK14966 unknown domain/N5-glu 99.3 1.8E-10 3.8E-15 110.0 16.0 112 83-208 250-383 (423)
110 PRK04457 spermidine synthase; 99.2 1.6E-10 3.5E-15 105.5 14.1 116 82-209 64-180 (262)
111 COG2242 CobL Precorrin-6B meth 99.2 4.3E-10 9.2E-15 95.1 15.0 120 76-217 26-146 (187)
112 PHA03411 putative methyltransf 99.2 1.4E-10 3E-15 104.7 12.1 99 83-203 63-180 (279)
113 TIGR00438 rrmJ cell division p 99.2 1.3E-10 2.9E-15 101.0 11.4 116 81-217 29-160 (188)
114 PF01135 PCMT: Protein-L-isoas 99.2 8.4E-11 1.8E-15 103.3 10.0 111 73-207 61-173 (209)
115 PRK09328 N5-glutamine S-adenos 99.2 3.5E-10 7.6E-15 104.4 14.7 112 81-207 105-239 (275)
116 smart00650 rADc Ribosomal RNA 99.2 1.6E-10 3.5E-15 98.8 11.4 114 75-210 4-117 (169)
117 PRK13943 protein-L-isoaspartat 99.2 2.6E-10 5.6E-15 106.7 13.3 107 76-206 72-180 (322)
118 PRK00811 spermidine synthase; 99.2 1.9E-10 4.2E-15 106.3 12.3 117 83-207 75-192 (283)
119 COG4123 Predicted O-methyltran 99.2 1.5E-10 3.2E-15 103.0 9.7 126 82-218 42-184 (248)
120 COG2518 Pcm Protein-L-isoaspar 99.2 3.1E-10 6.7E-15 98.0 11.1 110 73-207 61-170 (209)
121 PF05148 Methyltransf_8: Hypot 99.1 2.5E-10 5.4E-15 98.0 9.5 88 83-206 71-158 (219)
122 PRK10901 16S rRNA methyltransf 99.1 5.8E-10 1.3E-14 109.2 13.5 114 80-207 240-373 (427)
123 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.7E-10 1E-14 102.8 10.7 114 80-207 67-200 (264)
124 PRK14901 16S rRNA methyltransf 99.1 7.4E-10 1.6E-14 108.7 12.8 117 80-206 248-384 (434)
125 PRK14904 16S rRNA methyltransf 99.1 7.4E-10 1.6E-14 109.1 12.8 112 81-208 247-379 (445)
126 COG2519 GCD14 tRNA(1-methylade 99.1 1.5E-09 3.2E-14 95.9 12.7 120 75-217 85-206 (256)
127 PRK14903 16S rRNA methyltransf 99.1 1E-09 2.2E-14 107.3 12.8 116 80-208 233-368 (431)
128 PRK01544 bifunctional N5-gluta 99.1 7.7E-10 1.7E-14 110.2 12.1 110 84-207 138-270 (506)
129 TIGR00563 rsmB ribosomal RNA s 99.1 1.2E-09 2.7E-14 106.9 12.6 117 80-207 234-369 (426)
130 TIGR03704 PrmC_rel_meth putati 99.1 2.3E-09 5.1E-14 97.4 13.5 109 85-208 87-218 (251)
131 PRK15128 23S rRNA m(5)C1962 me 99.1 9.3E-10 2E-14 106.0 11.3 115 83-206 219-339 (396)
132 PRK11783 rlmL 23S rRNA m(2)G24 99.1 9.5E-10 2E-14 113.9 12.1 111 84-206 538-656 (702)
133 PF01739 CheR: CheR methyltran 99.1 5.1E-10 1.1E-14 97.3 8.6 116 84-206 31-175 (196)
134 COG2813 RsmC 16S RNA G1207 met 99.1 2.6E-09 5.6E-14 97.1 13.0 130 63-208 137-268 (300)
135 COG2890 HemK Methylase of poly 99.1 2.8E-09 6E-14 98.2 13.2 105 87-207 113-239 (280)
136 TIGR00417 speE spermidine synt 99.0 2.2E-09 4.9E-14 98.7 12.3 115 83-208 71-188 (270)
137 PLN02781 Probable caffeoyl-CoA 99.0 2E-09 4.2E-14 96.8 11.6 108 83-206 67-178 (234)
138 KOG2904 Predicted methyltransf 99.0 5.6E-09 1.2E-13 92.4 13.6 130 70-207 131-286 (328)
139 PRK01581 speE spermidine synth 99.0 2.8E-09 6.2E-14 99.8 12.6 119 83-209 149-271 (374)
140 PRK14902 16S rRNA methyltransf 99.0 2.1E-09 4.5E-14 105.9 12.3 114 81-207 247-380 (444)
141 PF08704 GCD14: tRNA methyltra 99.0 9E-09 1.9E-13 92.4 14.1 127 73-218 29-158 (247)
142 KOG2899 Predicted methyltransf 99.0 2.3E-09 4.9E-14 93.3 9.7 115 84-206 58-209 (288)
143 KOG3045 Predicted RNA methylas 99.0 2.8E-09 6.1E-14 93.5 10.2 86 83-206 179-264 (325)
144 COG1041 Predicted DNA modifica 99.0 3.1E-09 6.8E-14 98.3 11.1 131 62-207 174-311 (347)
145 PF12147 Methyltransf_20: Puta 99.0 6E-08 1.3E-12 87.3 18.3 112 84-206 135-249 (311)
146 PHA03412 putative methyltransf 99.0 4.1E-09 8.8E-14 93.1 10.4 98 84-201 49-158 (241)
147 PLN02366 spermidine synthase 99.0 7.9E-09 1.7E-13 96.2 12.8 116 83-206 90-206 (308)
148 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.1E-08 2.4E-13 89.3 12.4 108 83-208 52-161 (199)
149 PF00891 Methyltransf_2: O-met 99.0 7.4E-09 1.6E-13 93.7 11.8 99 81-205 97-198 (241)
150 PF02390 Methyltransf_4: Putat 98.9 6.6E-09 1.4E-13 90.6 10.7 121 83-216 16-143 (195)
151 KOG1499 Protein arginine N-met 98.9 4.5E-09 9.8E-14 96.7 9.6 116 73-203 49-164 (346)
152 PRK10611 chemotaxis methyltran 98.9 3.6E-09 7.9E-14 97.1 9.0 116 85-206 116-262 (287)
153 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.3E-08 2.7E-13 100.3 13.4 122 73-214 286-407 (443)
154 PRK03612 spermidine synthase; 98.9 6.8E-09 1.5E-13 104.0 10.9 116 83-207 296-416 (521)
155 PF01170 UPF0020: Putative RNA 98.9 3.6E-08 7.7E-13 84.9 12.3 126 69-208 12-152 (179)
156 COG2263 Predicted RNA methylas 98.8 1.1E-08 2.4E-13 86.2 8.3 73 83-173 44-116 (198)
157 PRK03522 rumB 23S rRNA methylu 98.8 2.2E-08 4.7E-13 94.2 11.1 102 84-206 173-274 (315)
158 PF05219 DREV: DREV methyltran 98.8 2.1E-08 4.6E-13 89.1 10.2 95 84-206 94-188 (265)
159 TIGR03439 methyl_EasF probable 98.8 1E-06 2.2E-11 82.3 21.2 235 28-287 32-308 (319)
160 PRK14896 ksgA 16S ribosomal RN 98.8 3E-08 6.6E-13 90.6 10.4 87 71-176 16-102 (258)
161 COG0220 Predicted S-adenosylme 98.8 4.3E-08 9.4E-13 87.0 10.8 116 86-214 50-172 (227)
162 PLN02672 methionine S-methyltr 98.8 4.5E-08 9.8E-13 103.8 12.5 120 85-208 119-280 (1082)
163 PRK11727 23S rRNA mA1618 methy 98.8 2.3E-07 4.9E-12 86.6 15.7 110 58-176 83-200 (321)
164 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 5.5E-08 1.2E-12 87.6 11.2 162 84-287 56-238 (256)
165 PRK00274 ksgA 16S ribosomal RN 98.8 2.6E-08 5.6E-13 91.7 9.3 85 72-174 30-114 (272)
166 COG1352 CheR Methylase of chem 98.8 6.1E-08 1.3E-12 88.0 11.5 114 85-205 97-240 (268)
167 PLN02476 O-methyltransferase 98.8 7.8E-08 1.7E-12 87.8 12.0 108 82-205 116-227 (278)
168 PF05185 PRMT5: PRMT5 arginine 98.8 4.3E-08 9.4E-13 95.8 10.7 119 69-203 166-294 (448)
169 PF07942 N2227: N2227-like pro 98.8 8.7E-07 1.9E-11 80.4 18.4 126 71-203 38-199 (270)
170 TIGR00478 tly hemolysin TlyA f 98.7 1E-07 2.2E-12 84.8 11.3 97 83-206 74-171 (228)
171 PF01596 Methyltransf_3: O-met 98.7 6.1E-08 1.3E-12 85.0 9.7 107 84-206 45-155 (205)
172 PTZ00338 dimethyladenosine tra 98.7 4.8E-08 1E-12 90.5 9.5 90 71-176 23-112 (294)
173 COG4122 Predicted O-methyltran 98.7 1.2E-07 2.6E-12 83.2 11.2 106 82-205 57-165 (219)
174 KOG1331 Predicted methyltransf 98.7 1.9E-08 4.2E-13 90.0 6.3 133 33-206 11-143 (293)
175 PF10672 Methyltrans_SAM: S-ad 98.7 1.2E-07 2.5E-12 87.1 11.5 126 83-218 122-254 (286)
176 TIGR00095 RNA methyltransferas 98.7 1.6E-07 3.6E-12 81.5 11.4 111 84-208 49-161 (189)
177 PF10294 Methyltransf_16: Puta 98.7 9.8E-08 2.1E-12 81.8 9.9 115 81-207 42-157 (173)
178 COG1092 Predicted SAM-dependen 98.7 8.2E-08 1.8E-12 91.6 10.2 115 84-207 217-337 (393)
179 COG3963 Phospholipid N-methylt 98.7 1.8E-07 3.9E-12 77.0 10.3 116 75-206 39-156 (194)
180 COG2521 Predicted archaeal met 98.7 9E-08 1.9E-12 83.0 8.9 117 82-209 132-248 (287)
181 TIGR00755 ksgA dimethyladenosi 98.7 2.5E-07 5.5E-12 84.3 12.4 87 71-176 16-105 (253)
182 TIGR00479 rumA 23S rRNA (uraci 98.7 2.6E-07 5.7E-12 90.8 13.3 115 80-213 288-402 (431)
183 TIGR02085 meth_trns_rumB 23S r 98.7 2.7E-07 6E-12 88.8 12.4 113 83-217 232-344 (374)
184 PF11968 DUF3321: Putative met 98.6 3.7E-07 8.1E-12 79.1 11.4 143 66-287 32-180 (219)
185 KOG1500 Protein arginine N-met 98.6 2.6E-07 5.7E-12 84.0 10.3 115 75-206 168-282 (517)
186 PF03602 Cons_hypoth95: Conser 98.6 1.5E-07 3.3E-12 81.1 8.0 113 84-209 42-156 (183)
187 PF02475 Met_10: Met-10+ like- 98.6 4E-07 8.6E-12 79.3 9.8 99 82-202 99-198 (200)
188 PLN02589 caffeoyl-CoA O-methyl 98.5 6.7E-07 1.5E-11 80.6 11.0 107 83-205 78-189 (247)
189 KOG1661 Protein-L-isoaspartate 98.5 5.9E-07 1.3E-11 76.8 9.1 110 82-206 80-193 (237)
190 PF02384 N6_Mtase: N-6 DNA Met 98.5 7.3E-07 1.6E-11 83.8 10.2 119 81-209 43-186 (311)
191 KOG0820 Ribosomal RNA adenine 98.5 1.4E-06 3.1E-11 77.4 11.1 85 73-173 47-131 (315)
192 COG0421 SpeE Spermidine syntha 98.5 1.4E-06 3E-11 79.9 11.4 131 68-208 61-192 (282)
193 PLN02823 spermine synthase 98.5 1.4E-06 2.9E-11 82.2 11.3 114 84-206 103-220 (336)
194 PF08123 DOT1: Histone methyla 98.5 5.9E-07 1.3E-11 78.7 8.1 128 71-205 29-157 (205)
195 PRK11933 yebU rRNA (cytosine-C 98.5 1.3E-06 2.7E-11 86.0 11.2 114 81-207 110-243 (470)
196 PF01728 FtsJ: FtsJ-like methy 98.5 3.8E-07 8.3E-12 78.7 6.7 115 84-218 23-154 (181)
197 PRK00050 16S rRNA m(4)C1402 me 98.5 5.9E-07 1.3E-11 82.8 8.2 90 73-175 8-100 (296)
198 KOG3420 Predicted RNA methylas 98.4 1.8E-07 4E-12 75.1 4.1 77 83-174 47-123 (185)
199 PRK04148 hypothetical protein; 98.4 6.4E-06 1.4E-10 66.6 11.6 96 84-209 16-112 (134)
200 KOG1269 SAM-dependent methyltr 98.4 5.2E-07 1.1E-11 85.5 6.2 108 81-205 107-214 (364)
201 PRK01544 bifunctional N5-gluta 98.4 2.7E-06 5.9E-11 84.9 11.5 120 84-215 347-471 (506)
202 PRK11783 rlmL 23S rRNA m(2)G24 98.4 5.6E-06 1.2E-10 86.1 14.0 117 83-210 189-351 (702)
203 KOG3178 Hydroxyindole-O-methyl 98.4 1.7E-06 3.6E-11 80.1 8.9 98 85-206 178-275 (342)
204 PF03141 Methyltransf_29: Puta 98.3 4.4E-07 9.5E-12 87.6 4.4 102 86-209 119-222 (506)
205 COG0116 Predicted N6-adenine-s 98.3 1.5E-05 3.2E-10 75.2 13.7 127 79-218 186-356 (381)
206 PRK00536 speE spermidine synth 98.3 7E-06 1.5E-10 74.5 10.9 102 83-207 71-172 (262)
207 PRK04338 N(2),N(2)-dimethylgua 98.3 8.4E-06 1.8E-10 78.4 12.0 106 85-212 58-164 (382)
208 COG0030 KsgA Dimethyladenosine 98.3 5.9E-06 1.3E-10 74.4 9.7 88 71-174 17-104 (259)
209 PF01564 Spermine_synth: Sperm 98.2 2.2E-06 4.7E-11 77.6 6.8 116 82-206 74-191 (246)
210 COG0500 SmtA SAM-dependent met 98.2 1.6E-05 3.5E-10 65.6 11.7 101 88-209 52-158 (257)
211 COG0742 N6-adenine-specific me 98.2 1.6E-05 3.4E-10 67.9 11.1 114 83-209 42-157 (187)
212 PRK05031 tRNA (uracil-5-)-meth 98.2 1.2E-05 2.7E-10 77.0 11.4 111 85-216 207-329 (362)
213 KOG2352 Predicted spermine/spe 98.2 1.7E-05 3.7E-10 76.4 11.6 111 81-206 44-162 (482)
214 PF09445 Methyltransf_15: RNA 98.2 2.9E-06 6.2E-11 71.2 5.6 76 86-172 1-76 (163)
215 COG2520 Predicted methyltransf 98.2 1.7E-05 3.8E-10 74.2 11.3 104 82-206 186-289 (341)
216 KOG3191 Predicted N6-DNA-methy 98.2 8.5E-05 1.8E-09 62.4 13.7 118 84-217 43-182 (209)
217 COG0293 FtsJ 23S rRNA methylas 98.2 2.7E-05 5.9E-10 67.4 11.1 117 82-219 43-175 (205)
218 TIGR02143 trmA_only tRNA (urac 98.1 1.8E-05 3.9E-10 75.6 11.0 112 86-217 199-321 (353)
219 TIGR00308 TRM1 tRNA(guanine-26 98.1 1.2E-05 2.6E-10 77.0 9.6 105 85-210 45-151 (374)
220 PF01269 Fibrillarin: Fibrilla 98.1 3.2E-05 6.9E-10 67.5 11.2 109 79-206 68-178 (229)
221 KOG2915 tRNA(1-methyladenosine 98.1 6.1E-05 1.3E-09 67.2 12.4 122 73-214 94-218 (314)
222 TIGR02987 met_A_Alw26 type II 98.1 3.6E-05 7.8E-10 77.6 12.4 81 84-173 31-120 (524)
223 PF04816 DUF633: Family of unk 98.1 6.3E-05 1.4E-09 66.0 12.1 108 88-214 1-109 (205)
224 PF13679 Methyltransf_32: Meth 98.0 0.0001 2.3E-09 60.8 11.2 108 82-210 23-135 (141)
225 COG1889 NOP1 Fibrillarin-like 98.0 0.00014 2.9E-09 62.3 11.7 109 79-206 71-180 (231)
226 PF02527 GidB: rRNA small subu 98.0 8.6E-05 1.9E-09 64.0 10.7 105 82-209 45-152 (184)
227 KOG1663 O-methyltransferase [S 98.0 7.1E-05 1.5E-09 65.4 10.1 106 84-205 73-182 (237)
228 PF00398 RrnaAD: Ribosomal RNA 97.9 0.00043 9.3E-09 63.4 15.7 107 71-198 17-123 (262)
229 PF09243 Rsm22: Mitochondrial 97.9 0.00018 4E-09 66.2 12.7 117 84-218 33-154 (274)
230 PF05958 tRNA_U5-meth_tr: tRNA 97.9 8.2E-05 1.8E-09 71.0 9.7 118 80-218 193-321 (352)
231 COG2265 TrmA SAM-dependent met 97.9 6.2E-05 1.4E-09 73.4 9.0 118 78-215 287-404 (432)
232 PF03059 NAS: Nicotianamine sy 97.8 0.00031 6.8E-09 64.1 12.5 109 86-209 122-233 (276)
233 COG0144 Sun tRNA and rRNA cyto 97.8 0.00017 3.6E-09 68.9 11.1 117 80-207 152-289 (355)
234 PRK11760 putative 23S rRNA C24 97.8 0.00019 4.1E-09 66.9 10.8 95 82-206 209-305 (357)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00029 6.3E-09 65.2 9.7 116 80-207 81-220 (283)
236 KOG2730 Methylase [General fun 97.6 0.00017 3.8E-09 62.4 7.0 102 84-199 94-195 (263)
237 COG4076 Predicted RNA methylas 97.6 0.00012 2.7E-09 61.7 5.9 100 85-203 33-132 (252)
238 PF05971 Methyltransf_10: Prot 97.6 0.00042 9.1E-09 63.9 9.9 137 34-177 49-189 (299)
239 COG1189 Predicted rRNA methyla 97.6 0.00062 1.3E-08 60.0 10.3 111 76-210 70-183 (245)
240 KOG2798 Putative trehalase [Ca 97.6 0.0015 3.3E-08 59.6 12.7 155 85-287 151-336 (369)
241 COG0357 GidB Predicted S-adeno 97.6 0.0013 2.7E-08 57.9 12.0 96 85-203 68-165 (215)
242 KOG4589 Cell division protein 97.6 0.00063 1.4E-08 57.5 9.5 108 81-209 66-187 (232)
243 PF04672 Methyltransf_19: S-ad 97.6 0.0009 2E-08 60.5 11.1 127 70-207 53-191 (267)
244 KOG3201 Uncharacterized conser 97.5 0.00026 5.7E-09 58.3 6.4 144 84-296 29-174 (201)
245 COG3897 Predicted methyltransf 97.5 0.0004 8.6E-09 59.2 7.7 104 84-210 79-183 (218)
246 PF13578 Methyltransf_24: Meth 97.5 8.3E-05 1.8E-09 58.0 3.4 100 89-205 1-104 (106)
247 TIGR00006 S-adenosyl-methyltra 97.5 0.00042 9.2E-09 64.2 8.5 93 73-175 9-102 (305)
248 COG4262 Predicted spermidine s 97.5 0.0013 2.8E-08 61.2 10.7 118 83-208 288-409 (508)
249 KOG3987 Uncharacterized conser 97.4 3.3E-05 7.2E-10 66.0 0.2 95 84-206 112-207 (288)
250 KOG1709 Guanidinoacetate methy 97.4 0.0019 4.1E-08 55.9 10.6 106 82-204 99-204 (271)
251 KOG2187 tRNA uracil-5-methyltr 97.4 0.00027 6E-09 68.5 5.7 64 80-153 379-442 (534)
252 COG4627 Uncharacterized protei 97.3 9.9E-05 2.1E-09 60.3 1.5 54 162-217 44-97 (185)
253 PF03492 Methyltransf_7: SAM d 97.3 0.0038 8.3E-08 59.1 12.2 119 82-207 14-184 (334)
254 PF06962 rRNA_methylase: Putat 97.2 0.0026 5.6E-08 51.9 8.8 85 109-206 1-92 (140)
255 KOG1122 tRNA and rRNA cytosine 97.2 0.0025 5.3E-08 60.6 9.8 114 80-206 237-371 (460)
256 TIGR01444 fkbM_fam methyltrans 97.1 0.0013 2.7E-08 54.2 6.3 58 87-153 1-59 (143)
257 PF11599 AviRa: RRNA methyltra 97.1 0.0045 9.8E-08 53.6 9.1 123 83-205 50-213 (246)
258 PF07091 FmrO: Ribosomal RNA m 97.0 0.0024 5.2E-08 57.0 7.2 81 82-178 103-184 (251)
259 PRK10742 putative methyltransf 97.0 0.004 8.7E-08 55.8 8.5 93 79-177 81-176 (250)
260 COG2384 Predicted SAM-dependen 97.0 0.013 2.9E-07 51.1 11.3 104 83-205 15-119 (226)
261 COG0286 HsdM Type I restrictio 96.9 0.006 1.3E-07 60.9 10.3 157 37-209 147-329 (489)
262 PLN02668 indole-3-acetate carb 96.9 0.054 1.2E-06 52.0 16.1 47 162-208 159-239 (386)
263 TIGR00027 mthyl_TIGR00027 meth 96.9 0.054 1.2E-06 49.5 15.6 114 85-209 82-200 (260)
264 KOG1596 Fibrillarin and relate 96.9 0.0055 1.2E-07 54.0 8.3 106 78-206 150-261 (317)
265 KOG2198 tRNA cytosine-5-methyl 96.7 0.019 4.1E-07 54.0 10.6 121 79-208 150-298 (375)
266 PF01795 Methyltransf_5: MraW 96.6 0.0077 1.7E-07 55.9 7.5 91 73-173 9-101 (310)
267 PF04989 CmcI: Cephalosporin h 96.6 0.0045 9.8E-08 53.9 5.6 108 84-206 32-147 (206)
268 KOG3115 Methyltransferase-like 96.5 0.0065 1.4E-07 52.2 6.1 118 85-206 61-183 (249)
269 KOG4058 Uncharacterized conser 96.4 0.011 2.4E-07 48.1 6.7 117 72-210 60-177 (199)
270 PRK11524 putative methyltransf 96.3 0.011 2.3E-07 54.9 7.0 56 72-128 196-251 (284)
271 PF02005 TRM: N2,N2-dimethylgu 96.3 0.013 2.9E-07 56.3 7.8 109 84-212 49-160 (377)
272 COG0275 Predicted S-adenosylme 96.3 0.023 4.9E-07 52.1 8.7 92 72-173 11-104 (314)
273 KOG2671 Putative RNA methylase 96.2 0.0046 1E-07 57.2 3.8 115 81-207 205-355 (421)
274 PF01555 N6_N4_Mtase: DNA meth 96.2 0.013 2.8E-07 51.9 6.7 53 72-125 179-231 (231)
275 KOG1562 Spermidine synthase [A 96.2 0.029 6.3E-07 51.1 8.6 127 83-217 120-247 (337)
276 COG4798 Predicted methyltransf 96.2 0.015 3.2E-07 49.7 6.1 115 79-206 43-166 (238)
277 COG1064 AdhP Zn-dependent alco 96.1 0.044 9.5E-07 51.6 9.7 96 80-205 162-258 (339)
278 KOG1501 Arginine N-methyltrans 96.0 0.012 2.5E-07 56.3 5.3 62 86-155 68-129 (636)
279 PRK13699 putative methylase; P 95.9 0.025 5.4E-07 50.6 7.0 54 75-129 154-207 (227)
280 COG4301 Uncharacterized conser 95.8 0.42 9.1E-06 42.6 13.9 152 26-206 33-193 (321)
281 COG3129 Predicted SAM-dependen 95.8 0.049 1.1E-06 47.9 8.1 135 36-177 26-165 (292)
282 KOG2793 Putative N2,N2-dimethy 95.8 0.054 1.2E-06 48.7 8.5 115 84-207 86-200 (248)
283 PF01861 DUF43: Protein of unk 95.8 0.39 8.4E-06 42.9 13.6 109 81-208 41-151 (243)
284 PHA01634 hypothetical protein 95.7 0.061 1.3E-06 42.8 7.5 45 84-128 28-72 (156)
285 cd00315 Cyt_C5_DNA_methylase C 95.6 0.027 5.8E-07 51.9 6.2 69 87-173 2-70 (275)
286 PF03269 DUF268: Caenorhabditi 95.5 0.028 6.1E-07 46.6 5.2 104 85-209 2-114 (177)
287 COG5459 Predicted rRNA methyla 95.5 0.052 1.1E-06 50.6 7.4 112 85-208 114-227 (484)
288 PF06859 Bin3: Bicoid-interact 95.3 0.0092 2E-07 46.2 1.5 43 165-207 1-45 (110)
289 KOG1227 Putative methyltransfe 94.7 0.02 4.3E-07 52.2 2.2 96 84-201 194-290 (351)
290 COG1867 TRM1 N2,N2-dimethylgua 94.7 0.14 3E-06 48.4 7.7 104 85-209 53-157 (380)
291 cd08283 FDH_like_1 Glutathione 94.6 0.2 4.2E-06 48.6 9.1 109 81-205 181-305 (386)
292 KOG1099 SAM-dependent methyltr 94.6 0.11 2.4E-06 45.6 6.4 102 85-207 42-164 (294)
293 PF03141 Methyltransf_29: Puta 94.4 0.08 1.7E-06 51.9 5.9 97 86-205 367-466 (506)
294 COG3315 O-Methyltransferase in 94.2 1.9 4.1E-05 40.2 14.3 113 85-207 93-210 (297)
295 KOG1253 tRNA methyltransferase 94.0 0.03 6.5E-07 54.5 1.9 112 84-212 109-222 (525)
296 PF07757 AdoMet_MTase: Predict 93.9 0.091 2E-06 40.5 4.1 32 84-116 58-89 (112)
297 KOG0822 Protein kinase inhibit 93.9 0.24 5.2E-06 48.7 7.9 102 86-203 369-475 (649)
298 PRK09880 L-idonate 5-dehydroge 93.9 0.5 1.1E-05 44.8 10.2 98 81-205 166-265 (343)
299 PF04445 SAM_MT: Putative SAM- 93.8 0.21 4.6E-06 44.5 6.9 90 80-177 69-163 (234)
300 PRK09424 pntA NAD(P) transhydr 93.8 0.35 7.6E-06 48.4 9.2 102 83-204 163-283 (509)
301 KOG3924 Putative protein methy 93.6 0.29 6.2E-06 46.6 7.6 130 69-206 177-308 (419)
302 COG1063 Tdh Threonine dehydrog 93.4 0.79 1.7E-05 43.8 10.6 97 83-204 167-267 (350)
303 KOG1098 Putative SAM-dependent 93.1 0.06 1.3E-06 53.7 2.5 105 81-206 41-158 (780)
304 PF10354 DUF2431: Domain of un 92.6 1.5 3.3E-05 37.1 10.1 62 147-209 58-128 (166)
305 COG1565 Uncharacterized conser 92.2 0.66 1.4E-05 43.8 7.9 61 69-129 62-131 (370)
306 cd08254 hydroxyacyl_CoA_DH 6-h 91.9 1.6 3.5E-05 40.8 10.6 98 81-205 162-262 (338)
307 PF11312 DUF3115: Protein of u 91.8 0.89 1.9E-05 42.2 8.1 120 86-205 88-241 (315)
308 COG3510 CmcI Cephalosporin hyd 91.6 2 4.3E-05 37.0 9.3 105 84-206 69-180 (237)
309 KOG2539 Mitochondrial/chloropl 91.4 1.2 2.6E-05 43.5 8.8 112 85-207 201-316 (491)
310 TIGR00497 hsdM type I restrict 91.3 1 2.2E-05 45.3 8.9 44 84-127 217-265 (501)
311 KOG0024 Sorbitol dehydrogenase 91.3 1.5 3.4E-05 40.8 9.1 101 81-206 166-273 (354)
312 PF03514 GRAS: GRAS domain fam 91.3 1.5 3.2E-05 42.4 9.5 126 76-205 102-243 (374)
313 PF00145 DNA_methylase: C-5 cy 91.2 0.42 9.2E-06 44.8 5.8 68 87-173 2-69 (335)
314 PF02636 Methyltransf_28: Puta 91.0 0.41 9E-06 43.4 5.2 59 71-129 4-72 (252)
315 TIGR00675 dcm DNA-methyltransf 90.9 0.39 8.3E-06 45.2 5.1 67 88-173 1-67 (315)
316 PRK01747 mnmC bifunctional tRN 90.2 3 6.5E-05 43.5 11.4 117 83-205 56-205 (662)
317 PRK11524 putative methyltransf 90.1 1 2.2E-05 41.7 7.0 62 143-207 8-81 (284)
318 TIGR02822 adh_fam_2 zinc-bindi 90.0 3.8 8.2E-05 38.6 11.1 92 80-205 161-253 (329)
319 TIGR00561 pntA NAD(P) transhyd 89.8 0.93 2E-05 45.4 6.8 100 84-203 163-281 (511)
320 PF02254 TrkA_N: TrkA-N domain 89.6 3.2 7E-05 32.3 8.8 95 93-211 4-101 (116)
321 PF04072 LCM: Leucine carboxyl 88.9 1.3 2.9E-05 38.0 6.5 100 84-192 77-182 (183)
322 PRK13699 putative methylase; P 88.7 1.7 3.7E-05 38.8 7.2 57 145-206 3-72 (227)
323 cd08237 ribitol-5-phosphate_DH 88.0 2.7 5.8E-05 39.9 8.5 91 82-204 161-254 (341)
324 KOG2920 Predicted methyltransf 87.9 0.49 1.1E-05 43.2 3.1 39 82-120 114-152 (282)
325 KOG2918 Carboxymethyl transfer 87.5 25 0.00053 32.8 16.7 37 265-301 254-290 (335)
326 cd08232 idonate-5-DH L-idonate 87.4 3.3 7.2E-05 38.9 8.8 95 84-205 165-261 (339)
327 PF05711 TylF: Macrocin-O-meth 87.4 7.9 0.00017 35.0 10.6 109 85-209 75-215 (248)
328 PF00107 ADH_zinc_N: Zinc-bind 87.3 1.3 2.9E-05 35.2 5.2 86 95-206 2-89 (130)
329 cd05188 MDR Medium chain reduc 87.2 5.2 0.00011 35.8 9.6 96 83-205 133-231 (271)
330 cd08230 glucose_DH Glucose deh 87.0 4.5 9.8E-05 38.4 9.5 94 82-204 170-267 (355)
331 PTZ00357 methyltransferase; Pr 86.9 2.7 5.8E-05 43.2 7.9 113 86-201 702-830 (1072)
332 KOG2078 tRNA modification enzy 86.9 0.55 1.2E-05 45.1 3.0 64 81-153 246-310 (495)
333 TIGR03366 HpnZ_proposed putati 86.7 3.7 8E-05 37.6 8.5 98 81-204 117-216 (280)
334 PRK10458 DNA cytosine methylas 86.6 2.6 5.7E-05 41.8 7.7 43 85-127 88-130 (467)
335 KOG2912 Predicted DNA methylas 86.3 1.7 3.8E-05 40.2 5.7 101 67-175 83-188 (419)
336 COG0270 Dcm Site-specific DNA 86.3 2.1 4.5E-05 40.5 6.6 73 85-173 3-75 (328)
337 PF11899 DUF3419: Protein of u 85.8 1.6 3.4E-05 42.2 5.6 60 142-206 275-334 (380)
338 KOG2651 rRNA adenine N-6-methy 85.5 2.5 5.3E-05 40.3 6.4 42 84-125 153-194 (476)
339 PF11899 DUF3419: Protein of u 85.2 2.6 5.5E-05 40.7 6.7 49 78-127 29-77 (380)
340 COG0686 Ald Alanine dehydrogen 85.0 3.2 6.9E-05 38.6 6.8 98 84-203 167-265 (371)
341 cd08281 liver_ADH_like1 Zinc-d 85.0 5.1 0.00011 38.4 8.8 97 81-204 188-288 (371)
342 cd08239 THR_DH_like L-threonin 84.9 5.6 0.00012 37.4 9.0 101 79-205 158-261 (339)
343 COG0863 DNA modification methy 83.9 3.2 7E-05 38.3 6.7 54 74-129 213-266 (302)
344 cd00401 AdoHcyase S-adenosyl-L 83.3 4.5 9.9E-05 39.5 7.6 87 83-205 200-288 (413)
345 TIGR03451 mycoS_dep_FDH mycoth 82.6 7.5 0.00016 37.0 8.8 98 81-205 173-275 (358)
346 cd08245 CAD Cinnamyl alcohol d 82.3 16 0.00034 34.1 10.8 97 80-205 158-255 (330)
347 cd08234 threonine_DH_like L-th 81.0 8.7 0.00019 35.8 8.6 100 80-205 155-256 (334)
348 PRK07066 3-hydroxybutyryl-CoA 80.9 45 0.00097 31.5 13.1 181 86-300 8-197 (321)
349 COG2933 Predicted SAM-dependen 80.8 9.5 0.00021 34.6 7.9 88 82-199 209-296 (358)
350 KOG0821 Predicted ribosomal RN 80.7 5 0.00011 35.3 6.0 65 82-156 48-112 (326)
351 cd08255 2-desacetyl-2-hydroxye 80.5 13 0.00027 33.7 9.3 95 80-205 93-189 (277)
352 PLN03154 putative allyl alcoho 80.5 12 0.00027 35.5 9.4 97 81-205 155-257 (348)
353 PF02737 3HCDH_N: 3-hydroxyacy 80.5 11 0.00023 32.3 8.2 105 87-207 1-115 (180)
354 PRK10309 galactitol-1-phosphat 79.8 11 0.00023 35.6 8.8 45 81-125 157-203 (347)
355 COG1255 Uncharacterized protei 79.6 14 0.00031 29.0 7.5 84 85-199 14-97 (129)
356 COG1568 Predicted methyltransf 79.2 15 0.00032 33.7 8.7 105 84-206 152-260 (354)
357 PF02826 2-Hacid_dh_C: D-isome 78.8 7.1 0.00015 33.2 6.5 100 84-218 35-143 (178)
358 cd08261 Zn_ADH7 Alcohol dehydr 78.2 15 0.00032 34.4 9.2 100 80-205 155-257 (337)
359 TIGR02825 B4_12hDH leukotriene 78.0 21 0.00045 33.3 10.1 98 80-204 134-235 (325)
360 PF02153 PDH: Prephenate dehyd 77.7 55 0.0012 29.7 13.9 87 101-218 4-91 (258)
361 TIGR01202 bchC 2-desacetyl-2-h 77.5 9.2 0.0002 35.6 7.4 86 83-205 143-230 (308)
362 PLN02586 probable cinnamyl alc 77.3 13 0.00028 35.5 8.6 95 82-205 181-277 (360)
363 PLN02740 Alcohol dehydrogenase 77.0 21 0.00045 34.3 10.0 46 80-125 194-241 (381)
364 TIGR03201 dearomat_had 6-hydro 76.2 17 0.00038 34.3 9.1 46 80-125 162-208 (349)
365 PF05206 TRM13: Methyltransfer 75.9 21 0.00047 32.5 9.0 111 82-206 16-140 (259)
366 KOG2352 Predicted spermine/spe 74.9 5.1 0.00011 39.4 4.9 114 84-206 295-416 (482)
367 cd05278 FDH_like Formaldehyde 74.3 27 0.00058 32.7 9.8 99 81-205 164-266 (347)
368 cd08294 leukotriene_B4_DH_like 74.0 27 0.00058 32.4 9.7 97 80-204 139-239 (329)
369 cd05285 sorbitol_DH Sorbitol d 73.5 28 0.0006 32.7 9.7 101 79-205 157-264 (343)
370 PRK03562 glutathione-regulated 72.2 33 0.00071 35.6 10.4 103 85-211 400-503 (621)
371 cd08242 MDR_like Medium chain 72.2 42 0.00091 31.0 10.5 92 80-204 151-243 (319)
372 PRK05786 fabG 3-ketoacyl-(acyl 71.8 48 0.001 29.0 10.4 112 84-206 4-135 (238)
373 PRK03659 glutathione-regulated 71.6 34 0.00074 35.3 10.4 102 86-211 401-503 (601)
374 PRK12480 D-lactate dehydrogena 71.1 29 0.00064 32.8 9.1 101 84-218 145-250 (330)
375 PRK10669 putative cation:proto 71.0 32 0.00069 35.1 10.0 101 86-210 418-519 (558)
376 cd08300 alcohol_DH_class_III c 71.0 48 0.001 31.6 10.8 46 80-125 182-229 (368)
377 PRK09496 trkA potassium transp 70.0 43 0.00093 32.9 10.5 95 87-206 2-99 (453)
378 PRK07417 arogenate dehydrogena 69.8 42 0.00091 30.8 9.7 84 87-202 2-87 (279)
379 PF03686 UPF0146: Uncharacteri 69.5 9.8 0.00021 30.5 4.6 94 84-210 13-106 (127)
380 PRK11730 fadB multifunctional 69.5 1.6E+02 0.0034 31.2 16.0 176 86-297 314-502 (715)
381 COG0569 TrkA K+ transport syst 69.5 15 0.00034 32.6 6.5 101 87-209 2-103 (225)
382 PLN02827 Alcohol dehydrogenase 69.4 30 0.00066 33.2 9.1 45 81-125 190-236 (378)
383 cd08293 PTGR2 Prostaglandin re 69.4 36 0.00077 31.9 9.4 96 82-204 150-252 (345)
384 TIGR00936 ahcY adenosylhomocys 69.3 21 0.00046 34.8 7.8 87 83-205 193-281 (406)
385 TIGR02818 adh_III_F_hyde S-(hy 69.2 53 0.0011 31.4 10.6 47 80-126 181-229 (368)
386 cd08296 CAD_like Cinnamyl alco 69.1 38 0.00082 31.7 9.5 99 80-205 159-258 (333)
387 PRK09496 trkA potassium transp 68.8 56 0.0012 32.1 11.0 74 84-172 230-304 (453)
388 cd08236 sugar_DH NAD(P)-depend 68.7 32 0.00069 32.2 8.9 100 80-205 155-257 (343)
389 PLN02494 adenosylhomocysteinas 68.4 17 0.00037 36.1 7.0 89 83-206 252-341 (477)
390 PLN02514 cinnamyl-alcohol dehy 67.9 36 0.00078 32.3 9.2 94 83-204 179-273 (357)
391 COG0604 Qor NADPH:quinone redu 66.8 15 0.00033 34.6 6.2 100 81-205 139-240 (326)
392 TIGR00518 alaDH alanine dehydr 66.5 11 0.00023 36.4 5.2 44 84-127 166-210 (370)
393 cd08295 double_bond_reductase_ 66.1 42 0.00091 31.4 9.2 96 81-204 148-249 (338)
394 PF06016 Reovirus_L2: Reovirus 65.7 20 0.00043 39.6 7.3 104 84-207 822-928 (1289)
395 PRK15469 ghrA bifunctional gly 65.6 51 0.0011 30.9 9.4 104 84-219 135-243 (312)
396 PRK05476 S-adenosyl-L-homocyst 65.4 23 0.00049 34.9 7.2 86 84-205 211-298 (425)
397 PF07279 DUF1442: Protein of u 65.1 83 0.0018 27.8 9.8 79 84-174 41-124 (218)
398 PRK08324 short chain dehydroge 64.2 35 0.00075 35.8 8.8 81 84-175 421-508 (681)
399 PLN02545 3-hydroxybutyryl-CoA 63.2 1.2E+02 0.0027 27.8 12.2 177 86-297 5-193 (295)
400 cd08285 NADP_ADH NADP(H)-depen 62.6 48 0.001 31.2 8.9 98 81-204 163-264 (351)
401 cd08278 benzyl_alcohol_DH Benz 62.3 56 0.0012 31.1 9.3 98 81-205 183-284 (365)
402 cd08233 butanediol_DH_like (2R 62.2 76 0.0017 29.8 10.2 98 80-204 168-270 (351)
403 PF07109 Mg-por_mtran_C: Magne 61.8 69 0.0015 24.4 8.6 74 181-288 9-82 (97)
404 PF02086 MethyltransfD12: D12 61.4 12 0.00027 33.6 4.4 44 84-128 20-63 (260)
405 cd08231 MDR_TM0436_like Hypoth 61.2 69 0.0015 30.2 9.7 42 83-124 176-219 (361)
406 PRK08267 short chain dehydroge 60.7 83 0.0018 28.0 9.8 77 86-175 2-87 (260)
407 PTZ00075 Adenosylhomocysteinas 60.6 32 0.0007 34.2 7.3 99 84-218 253-354 (476)
408 COG1062 AdhC Zn-dependent alco 59.9 80 0.0017 30.0 9.3 52 77-128 178-231 (366)
409 PRK12939 short chain dehydroge 58.6 60 0.0013 28.5 8.4 81 84-175 6-94 (250)
410 cd05281 TDH Threonine dehydrog 58.4 61 0.0013 30.3 8.8 98 82-205 161-261 (341)
411 PLN02178 cinnamyl-alcohol dehy 58.4 54 0.0012 31.5 8.5 37 83-119 177-214 (375)
412 PRK10083 putative oxidoreducta 58.2 79 0.0017 29.4 9.5 47 80-126 156-205 (339)
413 PRK07576 short chain dehydroge 58.2 80 0.0017 28.3 9.2 79 84-173 8-94 (264)
414 cd05213 NAD_bind_Glutamyl_tRNA 57.8 78 0.0017 29.6 9.2 40 84-123 177-218 (311)
415 PRK08293 3-hydroxybutyryl-CoA 57.7 1.5E+02 0.0034 27.1 15.7 103 86-203 4-117 (287)
416 PRK07502 cyclohexadienyl dehyd 57.5 88 0.0019 29.0 9.5 88 86-203 7-97 (307)
417 cd08298 CAD2 Cinnamyl alcohol 57.5 1.2E+02 0.0027 27.9 10.7 92 79-204 162-254 (329)
418 PRK08265 short chain dehydroge 57.4 89 0.0019 27.9 9.4 77 84-174 5-89 (261)
419 PRK06035 3-hydroxyacyl-CoA deh 57.3 68 0.0015 29.5 8.7 102 86-203 4-118 (291)
420 PRK07574 formate dehydrogenase 57.0 49 0.0011 32.1 7.8 104 84-218 191-300 (385)
421 COG1250 FadB 3-hydroxyacyl-CoA 56.8 1.3E+02 0.0028 28.3 10.2 183 86-297 4-192 (307)
422 cd08277 liver_alcohol_DH_like 56.8 61 0.0013 30.8 8.5 46 80-125 180-227 (365)
423 KOG0023 Alcohol dehydrogenase, 56.7 38 0.00082 31.9 6.5 51 78-128 175-226 (360)
424 PF05050 Methyltransf_21: Meth 56.4 18 0.0004 29.6 4.3 37 90-126 1-42 (167)
425 COG0287 TyrA Prephenate dehydr 56.3 91 0.002 28.8 9.1 104 86-219 4-111 (279)
426 PRK13243 glyoxylate reductase; 56.2 40 0.00086 32.0 7.0 103 84-218 149-256 (333)
427 PRK08306 dipicolinate synthase 55.6 52 0.0011 30.6 7.6 41 84-124 151-192 (296)
428 PRK11154 fadJ multifunctional 54.6 66 0.0014 34.0 8.9 177 86-297 310-499 (708)
429 cd08238 sorbose_phosphate_red 54.5 1.1E+02 0.0024 29.7 10.0 46 81-126 172-222 (410)
430 PRK05396 tdh L-threonine 3-deh 54.2 81 0.0018 29.5 8.8 97 83-206 162-263 (341)
431 PF10237 N6-adenineMlase: Prob 54.1 1.3E+02 0.0029 25.2 10.9 102 83-209 24-126 (162)
432 TIGR02819 fdhA_non_GSH formald 54.1 56 0.0012 31.6 7.8 107 81-204 182-297 (393)
433 COG5379 BtaA S-adenosylmethion 54.0 31 0.00067 31.9 5.4 76 112-206 291-366 (414)
434 cd08241 QOR1 Quinone oxidoredu 53.4 1.1E+02 0.0023 27.8 9.4 45 81-125 136-182 (323)
435 KOG1197 Predicted quinone oxid 53.1 74 0.0016 29.0 7.5 98 81-203 143-242 (336)
436 KOG0022 Alcohol dehydrogenase, 52.7 32 0.00069 32.2 5.4 48 81-128 189-238 (375)
437 cd05298 GH4_GlvA_pagL_like Gly 52.6 1.3E+02 0.0029 29.7 10.1 38 87-125 2-47 (437)
438 PRK06487 glycerate dehydrogena 52.5 45 0.00098 31.3 6.6 98 84-218 147-249 (317)
439 COG5379 BtaA S-adenosylmethion 52.4 42 0.00091 31.1 6.0 46 81-127 60-105 (414)
440 PRK06701 short chain dehydroge 52.3 1.1E+02 0.0024 28.0 9.2 111 84-205 45-180 (290)
441 cd05283 CAD1 Cinnamyl alcohol 52.0 1.3E+02 0.0028 28.1 9.8 96 81-205 166-262 (337)
442 PRK07904 short chain dehydroge 52.0 68 0.0015 28.7 7.6 82 83-175 6-97 (253)
443 PRK09260 3-hydroxybutyryl-CoA 51.7 54 0.0012 30.2 7.0 176 87-297 3-191 (288)
444 TIGR00692 tdh L-threonine 3-de 51.2 1.3E+02 0.0028 28.0 9.8 97 82-205 159-260 (340)
445 PRK07806 short chain dehydroge 50.9 1.4E+02 0.003 26.2 9.4 111 84-205 5-133 (248)
446 PLN03139 formate dehydrogenase 50.3 58 0.0013 31.6 7.1 105 84-218 198-307 (386)
447 cd00650 LDH_MDH_like NAD-depen 49.7 1.1E+02 0.0023 27.8 8.5 95 108-218 27-131 (263)
448 TIGR02437 FadB fatty oxidation 49.3 1.4E+02 0.0029 31.7 10.2 176 86-297 314-502 (714)
449 KOG1201 Hydroxysteroid 17-beta 49.3 69 0.0015 29.8 7.0 80 84-175 37-124 (300)
450 PRK07819 3-hydroxybutyryl-CoA 49.2 64 0.0014 29.8 7.0 105 86-206 6-121 (286)
451 cd08263 Zn_ADH10 Alcohol dehyd 48.9 1.3E+02 0.0027 28.6 9.3 98 82-205 185-286 (367)
452 PRK08410 2-hydroxyacid dehydro 48.9 47 0.001 31.1 6.1 100 84-218 144-248 (311)
453 PF06460 NSP13: Coronavirus NS 48.7 1.1E+02 0.0023 28.0 7.8 98 82-207 59-170 (299)
454 cd01065 NAD_bind_Shikimate_DH 48.6 95 0.002 25.1 7.4 45 83-127 17-63 (155)
455 PF06557 DUF1122: Protein of u 48.0 50 0.0011 27.7 5.3 34 184-217 64-97 (170)
456 cd08265 Zn_ADH3 Alcohol dehydr 47.8 91 0.002 29.9 8.2 100 81-205 200-306 (384)
457 PRK08655 prephenate dehydrogen 47.7 1.8E+02 0.004 28.7 10.3 100 87-218 2-104 (437)
458 PRK06932 glycerate dehydrogena 47.6 51 0.0011 30.9 6.2 99 84-218 146-249 (314)
459 cd05197 GH4_glycoside_hydrolas 46.8 2E+02 0.0044 28.3 10.4 35 87-122 2-44 (425)
460 cd08279 Zn_ADH_class_III Class 46.6 1.9E+02 0.0042 27.3 10.2 99 81-205 179-281 (363)
461 cd08240 6_hydroxyhexanoate_dh_ 46.6 1.1E+02 0.0024 28.7 8.5 93 83-204 174-272 (350)
462 PLN02928 oxidoreductase family 45.9 67 0.0014 30.6 6.8 116 84-218 158-278 (347)
463 cd08266 Zn_ADH_like1 Alcohol d 45.8 1.7E+02 0.0036 26.9 9.5 45 81-125 163-209 (342)
464 PF02719 Polysacc_synt_2: Poly 45.8 13 0.00028 34.5 1.8 82 93-178 5-90 (293)
465 PF01555 N6_N4_Mtase: DNA meth 45.6 19 0.0004 31.4 2.8 48 183-230 33-84 (231)
466 TIGR02441 fa_ox_alpha_mit fatt 45.3 4.1E+02 0.0088 28.3 14.0 176 86-297 336-524 (737)
467 TIGR02356 adenyl_thiF thiazole 45.0 53 0.0011 28.6 5.5 33 84-116 20-54 (202)
468 cd08270 MDR4 Medium chain dehy 44.7 1.9E+02 0.0041 26.2 9.6 88 83-204 131-220 (305)
469 PF08484 Methyltransf_14: C-me 44.7 92 0.002 26.0 6.7 93 83-207 66-160 (160)
470 cd08286 FDH_like_ADH2 formalde 44.6 1.2E+02 0.0026 28.3 8.3 100 81-204 163-264 (345)
471 cd08274 MDR9 Medium chain dehy 44.1 1.6E+02 0.0034 27.5 9.1 97 80-204 173-271 (350)
472 TIGR01035 hemA glutamyl-tRNA r 43.8 1.7E+02 0.0036 28.7 9.4 39 83-121 178-218 (417)
473 COG0275 Predicted S-adenosylme 43.7 43 0.00093 31.2 4.8 34 183-216 221-256 (314)
474 cd05279 Zn_ADH1 Liver alcohol 43.5 2.3E+02 0.005 26.8 10.2 45 81-125 180-226 (365)
475 TIGR00006 S-adenosyl-methyltra 43.3 43 0.00093 31.3 4.8 33 183-215 217-251 (305)
476 PRK07533 enoyl-(acyl carrier p 43.3 2.4E+02 0.0052 25.1 10.0 81 84-175 9-98 (258)
477 COG1052 LdhA Lactate dehydroge 43.2 1E+02 0.0023 29.1 7.5 104 84-219 145-253 (324)
478 cd08235 iditol_2_DH_like L-idi 42.7 2.3E+02 0.005 26.3 10.0 99 81-205 162-264 (343)
479 PF01210 NAD_Gly3P_dh_N: NAD-d 42.3 95 0.0021 25.6 6.5 101 87-205 1-102 (157)
480 PF05430 Methyltransf_30: S-ad 42.0 40 0.00086 26.9 3.9 52 143-203 32-87 (124)
481 PLN02702 L-idonate 5-dehydroge 41.8 2.1E+02 0.0046 27.0 9.7 46 80-125 177-224 (364)
482 PRK05808 3-hydroxybutyryl-CoA 40.9 2.8E+02 0.0061 25.2 15.0 175 87-297 5-192 (282)
483 PRK13581 D-3-phosphoglycerate 40.5 79 0.0017 32.1 6.7 102 84-218 139-246 (526)
484 PRK06130 3-hydroxybutyryl-CoA 40.4 2E+02 0.0044 26.6 9.1 40 86-126 5-46 (311)
485 PRK15409 bifunctional glyoxyla 40.4 92 0.002 29.4 6.7 103 84-218 144-252 (323)
486 PRK07530 3-hydroxybutyryl-CoA 40.3 2E+02 0.0043 26.4 8.9 105 86-206 5-119 (292)
487 PRK07889 enoyl-(acyl carrier p 39.7 2.7E+02 0.0059 24.7 9.6 79 84-175 6-95 (256)
488 PRK12742 oxidoreductase; Provi 39.7 2.5E+02 0.0054 24.3 9.8 106 84-205 5-130 (237)
489 PLN02256 arogenate dehydrogena 39.6 2E+02 0.0044 26.8 8.8 103 82-218 33-139 (304)
490 COG1748 LYS9 Saccharopine dehy 39.6 96 0.0021 30.1 6.7 72 86-173 2-76 (389)
491 cd08260 Zn_ADH6 Alcohol dehydr 39.6 2E+02 0.0044 26.7 9.1 97 81-204 162-262 (345)
492 PRK00050 16S rRNA m(4)C1402 me 39.2 54 0.0012 30.5 4.8 33 183-215 213-247 (296)
493 PRK08269 3-hydroxybutyryl-CoA 39.1 1.6E+02 0.0034 27.7 8.0 36 164-204 78-113 (314)
494 PRK06223 malate dehydrogenase; 39.0 2.2E+02 0.0049 26.3 9.1 36 86-121 3-40 (307)
495 TIGR02279 PaaC-3OHAcCoADH 3-hy 38.9 4.1E+02 0.0088 26.8 11.4 105 86-206 6-120 (503)
496 PF14740 DUF4471: Domain of un 38.6 28 0.0006 32.3 2.8 36 163-207 220-255 (289)
497 PF01795 Methyltransf_5: MraW 38.2 41 0.0009 31.5 3.9 34 183-216 218-253 (310)
498 TIGR00853 pts-lac PTS system, 38.2 1.7E+02 0.0037 22.0 6.7 49 143-206 33-81 (95)
499 KOG1209 1-Acyl dihydroxyaceton 38.1 2E+02 0.0043 25.6 7.7 34 84-117 6-42 (289)
500 PRK06522 2-dehydropantoate 2-r 38.0 2.9E+02 0.0063 25.2 9.7 96 87-204 2-98 (304)
No 1
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=7.8e-58 Score=405.51 Aligned_cols=333 Identities=51% Similarity=0.831 Sum_probs=290.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH
Q 017369 1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL 80 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~ 80 (372)
|+|..-+.|..|..+ .+.+... ++.++.+.+.+.+.-+.||+|||.+...+...|..|+|+.+|++|||+|++||+.
T Consensus 37 ~~re~~D~p~~~~~~-~~~~~~~--~d~~e~e~~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~ 113 (389)
T KOG1975|consen 37 MKRERYDQPRRSSSP-AQGFRNE--GDRPEIEMEANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINL 113 (389)
T ss_pred cchhhhcCccccCcc-ccccccc--ccchhhHhhhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHH
Confidence 445555555543333 4444433 6777777777888899999999999999999999999999999999999999999
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+++..++|+|||.|+++++|..++.+.++|+||++..|++|++|+..+. ++..+..+.+.|+++|+....+.+.+
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~---~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMK---NRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHH---hhhhcccceeEEEEeccchhHHHHhc
Confidence 999999999999999999999999999999999999999999999998543 22345667899999999876655444
Q ss_pred CCCC-CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhh
Q 017369 161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~ 239 (372)
..+. +||+|.|+|++||.|++.+.++.+|+++++.|+|||+||+|+|+.+.|+.+++......|||.+|+|+|. ....
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~-~~~~ 269 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYE-IEFQ 269 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeee-eecc
Confidence 3333 4999999999999999999999999999999999999999999999999999999888999999999998 4445
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCCC
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQDQ 319 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 319 (372)
+.+. .++||.+|+|+|+++|+||||+++++.++.|++++|+++|.+++|.+|+.+++..+.+..|+++|+.++... +.
T Consensus 270 k~~~-~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~-~~ 347 (389)
T KOG1975|consen 270 KEFD-VPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYP-NE 347 (389)
T ss_pred cccC-CCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCC-cc
Confidence 5555 578999999999999999999999999999999999999999999999999999999999999999887544 33
Q ss_pred CCCCHhHHHHHHhhcEEEEEecC
Q 017369 320 STLSADEWEVAYLYLAFVLRKRG 342 (372)
Q Consensus 320 ~~ls~~e~e~~~ly~~~vf~K~~ 342 (372)
...+.+|||++++|..|++.|.+
T Consensus 348 ~~~~~de~e~a~~~l~~~~~~~~ 370 (389)
T KOG1975|consen 348 EGESGDEYEAASFYLTFFPEKDR 370 (389)
T ss_pred ccccchHHHHHHHHHhhhhhccc
Confidence 46899999999999998888865
No 2
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=8.6e-53 Score=392.26 Aligned_cols=299 Identities=51% Similarity=0.865 Sum_probs=225.2
Q ss_pred hHHHHHHHHhhccccccc--hhhhhcCccccchhhhHHHHHHHHHHhCC------CCCEEEEecCCccccHHHHHHcCCC
Q 017369 37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG 108 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~--~~~r~~s~~~~~~~~~~~~k~~l~~~~~~------~~~~VLDlGcG~G~~~~~l~~~~~~ 108 (372)
....+.+++||++++... ...|..|+|.++|.++||+|++|+..+.. ++.+|||||||.|+++.+|...+..
T Consensus 7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~ 86 (331)
T PF03291_consen 7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK 86 (331)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence 345667999999988776 78899999999999999999999999988 8999999999999999999999999
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCccc-ccccCCCcCeEEEECcCcccccccccCCC-CCeeEEEecccccccCCCHHHHH
Q 017369 109 YYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARAR 186 (372)
Q Consensus 109 ~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~ 186 (372)
.++|+|||...|++|++|+....... .+.....+...|+.+|+....+.+.+.+. ..||+|.|++++||+|++++.++
T Consensus 87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar 166 (331)
T PF03291_consen 87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR 166 (331)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence 99999999999999999993211110 01122346788999999876655544333 59999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh----hcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccc-c
Q 017369 187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE----VEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV-D 261 (372)
Q Consensus 187 ~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~----~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~-~ 261 (372)
.+|++++..|+|||+||+|+|+++.++..+++ ..+..+||.+|.|+|+.+ ...++||.+|.|+|.+.+ +
T Consensus 167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~------~~~~~fG~~Y~F~L~~~v~~ 240 (331)
T PF03291_consen 167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD------DFFPPFGAKYDFYLEDAVDD 240 (331)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC------SS--CTTEEEEEEETTCSSC
T ss_pred HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc------CCCCCCCcEEEEEecCcCCC
Confidence 99999999999999999999999999888887 567789999999999987 224579999999999999 8
Q ss_pred CceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCCC----------CCCCCHhHHHHHH
Q 017369 262 CPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQD----------QSTLSADEWEVAY 331 (372)
Q Consensus 262 ~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~ls~~e~e~~~ 331 (372)
+||||++++.|++||+++||++|+..+|++|+.++...+....++++|..+...... .+.||.+|||+++
T Consensus 241 ~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~ 320 (331)
T PF03291_consen 241 CPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAAS 320 (331)
T ss_dssp EEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHC
T ss_pred CceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999888877778888888887543221 2469999999999
Q ss_pred -hhcEEEEEec
Q 017369 332 -LYLAFVLRKR 341 (372)
Q Consensus 332 -ly~~~vf~K~ 341 (372)
||.+|||+|+
T Consensus 321 ~lY~~F~F~K~ 331 (331)
T PF03291_consen 321 SLYLVFAFKKK 331 (331)
T ss_dssp TTEEEEEEEE-
T ss_pred hheEEEEEEeC
Confidence 9999999995
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=4.5e-24 Score=188.90 Aligned_cols=144 Identities=26% Similarity=0.477 Sum_probs=124.8
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG 112 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~g 112 (372)
+...+.|+++|..||. .+. +.+++....|.+.++......+|.+|||+|||||.++..+++. +.++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~-~n~---------~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~ 80 (238)
T COG2226 11 EKVQKVFDKVAKKYDL-MND---------LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG 80 (238)
T ss_pred HHHHHHHHhhHHHHHh-hcc---------cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence 4456799999999984 332 3568888999999998888889999999999999999999874 4568999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
+|+|+.|++.|+++..+. +.. +++|+++|++++|+ ++++||+|.+.++|+++ .+..++|+++
T Consensus 81 ~D~s~~ML~~a~~k~~~~--------~~~-~i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~ 142 (238)
T COG2226 81 LDISESMLEVAREKLKKK--------GVQ-NVEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM 142 (238)
T ss_pred EECCHHHHHHHHHHhhcc--------Ccc-ceEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence 999999999999998742 223 39999999999999 89999999999999998 6899999999
Q ss_pred HHhcCCCcEEEEE
Q 017369 193 SALLRPGGTFIGT 205 (372)
Q Consensus 193 ~~~LkpgG~li~~ 205 (372)
+|+|||||++++.
T Consensus 143 ~RVlKpgG~~~vl 155 (238)
T COG2226 143 YRVLKPGGRLLVL 155 (238)
T ss_pred HHhhcCCeEEEEE
Confidence 9999999987653
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=4.3e-24 Score=191.01 Aligned_cols=207 Identities=24% Similarity=0.410 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEE
Q 017369 35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG 112 (372)
Q Consensus 35 ~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~g 112 (372)
...++|++++..||. .+.. .+++....|.+.++......++.+|||+|||||..+..+++. ..+.|+|
T Consensus 8 ~v~~~Fd~ia~~YD~-~n~~---------ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~ 77 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDR-MNDL---------LSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVG 77 (233)
T ss_dssp ---------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEE
T ss_pred HHHHHHHHHHHHhCC-Cccc---------cCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEE
Confidence 345699999999984 4332 346777788888877777888999999999999988888764 3468999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
+|+|++|++.|+++.... + ..+++++++|+.++|+ ++++||+|+|.++++++ .+..++++++
T Consensus 78 vD~s~~ML~~a~~k~~~~--------~-~~~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E~ 139 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKRE--------G-LQNIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALREM 139 (233)
T ss_dssp EES-HHHHHHHHHHHHHT--------T---SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHhh--------C-CCCeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHHH
Confidence 999999999999998732 1 2279999999999998 78999999999999987 5678899999
Q ss_pred HHhcCCCcEEEE---EeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeeh
Q 017369 193 SALLRPGGTFIG---TMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPF 269 (372)
Q Consensus 193 ~~~LkpgG~li~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~ 269 (372)
+|+|||||.+++ +.|... ++..+-..+-..+ +..+ ... +.. -...|.+ |.+++. .+.+.
T Consensus 140 ~RVLkPGG~l~ile~~~p~~~-~~~~~~~~y~~~i---lP~~---g~l----~~~---~~~~Y~y-L~~Si~---~f~~~ 201 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRNP-LLRALYKFYFKYI---LPLI---GRL----LSG---DREAYRY-LPESIR---RFPSP 201 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SSH-HHHHHHHH--------------------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCCc-hhhceeeeeeccc---cccc---ccc----ccc---ccccccc-cccccc---ccccc
Confidence 999999999764 335432 3333222111000 0000 000 000 0012332 333332 36778
Q ss_pred HHHHHHHHHcCcEEEEec
Q 017369 270 HIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 270 ~~l~~l~~~~Gf~~v~~~ 287 (372)
+++.++++++||+.|+..
T Consensus 202 ~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 202 EELKELLEEAGFKNVEYR 219 (233)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 899999999999887654
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.87 E-value=1.1e-20 Score=172.71 Aligned_cols=149 Identities=21% Similarity=0.313 Sum_probs=113.8
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C-CCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~ 111 (372)
+...++|+.+|..||..... .++.....|.+.++......++.+|||+|||+|..+..++.. + .++|+
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~----------~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDL----------LSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhh----------hcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 34567999999999853211 112233456655555556678899999999999988877664 2 35899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|++|++.|+++..... .....++.++++|+.++++ ++++||+|++.+++|++ .++..++++
T Consensus 103 gvD~S~~ml~~A~~r~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e 167 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELKA------KSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE 167 (261)
T ss_pred EEECCHHHHHHHHHHhhhhh------hccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence 99999999999988753100 1123468999999999887 67899999999999987 567899999
Q ss_pred HHHhcCCCcEEEEEeC
Q 017369 192 VSALLRPGGTFIGTMP 207 (372)
Q Consensus 192 i~~~LkpgG~li~~~~ 207 (372)
+.++|||||.+++...
T Consensus 168 i~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 168 MYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHcCcCcEEEEEEC
Confidence 9999999999887653
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.85 E-value=2e-19 Score=170.47 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=125.7
Q ss_pred HHHHHHHHHhC-----CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 72 WIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 72 ~~k~~l~~~~~-----~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.+..++....+ .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... .++..++.+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~--------~g~~~~v~~ 172 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAA--------QGLSDKVSF 172 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEE
Confidence 34445544444 57789999999999999888876556899999999999999988763 234457999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGN 226 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~ 226 (372)
+++|+.++++ ++++||+|++..+++|+ .+...+++++.++|||||.|++.......... +.
T Consensus 173 ~~~D~~~~~~-----~~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~----------~~ 233 (340)
T PLN02244 173 QVADALNQPF-----EDGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWCHRDLEP----------GE 233 (340)
T ss_pred EEcCcccCCC-----CCCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEeccccccc----------cc
Confidence 9999998887 67899999999999997 45779999999999999999887643211000 00
Q ss_pred eEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 227 SVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 227 ~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
. .+...... . +.. +......| .+.+.+.+.++++++||+.|+..++.+.+..
T Consensus 234 ~----~l~~~~~~-~------~~~-----i~~~~~~p-~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~ 285 (340)
T PLN02244 234 T----SLKPDEQK-L------LDK-----ICAAYYLP-AWCSTSDYVKLAESLGLQDIKTEDWSEHVAP 285 (340)
T ss_pred c----cCCHHHHH-H------HHH-----HHhhccCC-CCCCHHHHHHHHHHCCCCeeEeeeCcHHHHH
Confidence 0 00000000 0 000 00000011 1456789999999999999999888776443
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.84 E-value=3.7e-19 Score=166.02 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=115.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||||||+|.++..++.. ..+|+|+|+|+.|++.|+.+... .....++.++++|+.++++ .+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~--------~~~~~~i~~~~~dae~l~~-----~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADM--------DPVTSTIEYLCTTAEKLAD-----EG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHh--------cCcccceeEEecCHHHhhh-----cc
Confidence 5679999999999998887754 45899999999999999987642 1123468999999988775 56
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH--HHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI--IKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~--~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
++||+|+|..+++|+ .++..+++++.++|||||.+++++++.... ...+.. .++...-
T Consensus 197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~----------------~eyi~~~ 256 (322)
T PLN02396 197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG----------------AEYILRW 256 (322)
T ss_pred CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh----------------HHHHHhc
Confidence 799999999999998 567899999999999999999999876421 111000 0000000
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecCh
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNS 289 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~ 289 (372)
.+ .|.. ....+++.+++.++++++||++++...+
T Consensus 257 lp----~gth----------~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 257 LP----KGTH----------QWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred CC----CCCc----------CccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 01 0100 0012678899999999999999988643
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.84 E-value=8.2e-20 Score=158.71 Aligned_cols=203 Identities=21% Similarity=0.295 Sum_probs=143.8
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-C------CCE
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY 109 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~------~~~ 109 (372)
...|+.+|..||. .++.. +++..+-|-...+..+.+.++.+|||+|||||..+..+++. . .++
T Consensus 63 ~~vF~~vA~~YD~-mND~m---------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~ 132 (296)
T KOG1540|consen 63 HHVFESVAKKYDI-MNDAM---------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK 132 (296)
T ss_pred HHHHHHHHHHHHH-HHHHh---------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence 3579999999983 44432 36777788444555667788999999999999999888874 2 257
Q ss_pred EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHH
Q 017369 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189 (372)
Q Consensus 110 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l 189 (372)
|+++|++++||+.+++|..+... .-...+.|+++|++++|+ ++.+||...+.+.+.+. .++.+.|
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~~l------~~~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k~l 197 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKRPL------KASSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQKAL 197 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhcCC------CcCCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHHHH
Confidence 99999999999999999864211 112348999999999999 88999999999999987 7899999
Q ss_pred HHHHHhcCCCcEEEE-EeCChH-HHHHHHhhhcCCc----cCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCc
Q 017369 190 ANVSALLRPGGTFIG-TMPDAN-VIIKKLREVEGLA----IGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCP 263 (372)
Q Consensus 190 ~~i~~~LkpgG~li~-~~~~~~-~~~~~l~~~~~~~----~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~ 263 (372)
++++|+|||||+|.+ .++..+ ..+..+...+... .| .++. . .-..|.+ |-++|.
T Consensus 198 ~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG-~~ia----g------------d~~sYqY-LveSI~-- 257 (296)
T KOG1540|consen 198 REAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLG-EIIA----G------------DRKSYQY-LVESIR-- 257 (296)
T ss_pred HHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhh-Hhhh----h------------hHhhhhh-HHhhhh--
Confidence 999999999999764 444443 3444443322110 01 0000 0 0011222 222332
Q ss_pred eeeeehHHHHHHHHHcCcEEEE
Q 017369 264 EWIVPFHIFKSLAEEYDLELVF 285 (372)
Q Consensus 264 e~l~~~~~l~~l~~~~Gf~~v~ 285 (372)
.+.+.++|..+.+++||..+.
T Consensus 258 -rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 258 -RFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred -cCCCHHHHHHHHHHcCCcccc
Confidence 467888999999999998775
No 9
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=7.5e-20 Score=167.02 Aligned_cols=243 Identities=17% Similarity=0.243 Sum_probs=152.1
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHH--HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeC
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNW--IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI 115 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~--~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~ 115 (372)
..||.+|.+|.+....+...+ ++....| +..++..+. .++.+|||+|||+|..+..++..+ .+|+|+|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~-------~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~ 74 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQ-------IRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDL 74 (255)
T ss_pred CChhhHHHHHHHhccCCCccH-------HHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEEC
Confidence 468889999986443332222 1211111 223333332 456899999999999999888764 58999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
|+.|++.|+++... .++..++.++++|+.+++ + .+++||+|+|..+++|+ .++..+++++.+
T Consensus 75 s~~~l~~a~~~~~~--------~g~~~~v~~~~~d~~~l~~~-----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~ 137 (255)
T PRK11036 75 SAEMIQRAKQAAEA--------KGVSDNMQFIHCAAQDIAQH-----LETPVDLILFHAVLEWV----ADPKSVLQTLWS 137 (255)
T ss_pred CHHHHHHHHHHHHh--------cCCccceEEEEcCHHHHhhh-----cCCCCCEEEehhHHHhh----CCHHHHHHHHHH
Confidence 99999999998764 334457899999997753 2 45789999999999997 456789999999
Q ss_pred hcCCCcEEEEEeCChHHHH-HHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHH
Q 017369 195 LLRPGGTFIGTMPDANVII-KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFK 273 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~ 273 (372)
+|||||.+++..++..... ..+.. ++ ++. ....++.. .. +. ..|.+.++.+.+.
T Consensus 138 ~LkpgG~l~i~~~n~~~~~~~~~~~------~~------~~~--~~~~~~~~----~~--~~-----~~p~~~~~~~~l~ 192 (255)
T PRK11036 138 VLRPGGALSLMFYNANGLLMHNMVA------GN------FDY--VQAGMPKR----KK--RT-----LSPDYPLDPEQVY 192 (255)
T ss_pred HcCCCeEEEEEEECccHHHHHHHHc------cC------hHH--HHhcCccc----cc--cC-----CCCCCCCCHHHHH
Confidence 9999999998887765432 11110 00 000 00000000 00 00 0122356778999
Q ss_pred HHHHHcCcEEEEecC---hhHHHHHHh-CChhhHHHHHHhccCCCCCCCCCCCCH-hHHHHHHhhcEEEEEec
Q 017369 274 SLAEEYDLELVFVKN---SHEFVHEYL-KKPEYIELMRRLGALGDGNQDQSTLSA-DEWEVAYLYLAFVLRKR 341 (372)
Q Consensus 274 ~l~~~~Gf~~v~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ls~-~e~e~~~ly~~~vf~K~ 341 (372)
++++++||+++.... |.++..... ....+..+++--.. .+. +.+.-++.|.-++++|.
T Consensus 193 ~~l~~aGf~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~e~~----------~~~~~~~~~~~~~~h~~~~~~ 255 (255)
T PRK11036 193 QWLEEAGWQIMGKTGVRVFHDYLRNKHQQRDCFEALLELEQR----------YCRQEPYISLGRYIHVTARKP 255 (255)
T ss_pred HHHHHCCCeEeeeeeEEEEeeccCccccccchHHHHHHHHHH----------HhcCCchhhhhhHheEEEeCC
Confidence 999999999987665 455543221 12234444431111 111 22334567888888873
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.82 E-value=5.1e-19 Score=159.23 Aligned_cols=145 Identities=21% Similarity=0.416 Sum_probs=117.0
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~ 111 (372)
+....+|++++.+|+..... .++.....|...++..+.+.++.+|||+|||+|.++..++.. ..++|+
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~----------~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~ 74 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSV----------ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVI 74 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHH----------hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence 34567999999999864221 234566778888887777788999999999999999888764 345899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|+.+++.|+++... .+ ..++.++++|+.+.++ ++++||+|++.++++++ .+..+++++
T Consensus 75 gvD~s~~~~~~a~~~~~~--------~~-~~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~ 136 (231)
T TIGR02752 75 GLDFSENMLSVGRQKVKD--------AG-LHNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLRE 136 (231)
T ss_pred EEECCHHHHHHHHHHHHh--------cC-CCceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence 999999999999998753 12 2368999999988776 56899999999999887 456789999
Q ss_pred HHHhcCCCcEEEEEe
Q 017369 192 VSALLRPGGTFIGTM 206 (372)
Q Consensus 192 i~~~LkpgG~li~~~ 206 (372)
+.++|+|||++++..
T Consensus 137 ~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 137 MYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHcCcCeEEEEEE
Confidence 999999999988754
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.81 E-value=1.3e-18 Score=158.60 Aligned_cols=218 Identities=18% Similarity=0.259 Sum_probs=142.8
Q ss_pred cchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEE
Q 017369 32 EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111 (372)
Q Consensus 32 ~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~ 111 (372)
.++.....|++.+..|++.... .......++..+...++.+|||+|||+|..+..+... ..+|+
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~---------------q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~ 68 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAEL---------------QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVT 68 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHH---------------HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEE
Confidence 3445667899999999853211 1112233333333345789999999999988887654 45899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|+.|++.|+++.. ...++++|+..+++ ++++||+|+++.+++|+ .++..++.+
T Consensus 69 ~~D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~ 125 (251)
T PRK10258 69 ALDLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRE 125 (251)
T ss_pred EEECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHH
Confidence 99999999999988754 24678999988776 67799999999999987 568899999
Q ss_pred HHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHH
Q 017369 192 VSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHI 271 (372)
Q Consensus 192 i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~ 271 (372)
+.++|+|||.++++++....+.+ +..... .+ +.. + . ...+.+.++
T Consensus 126 ~~~~Lk~gG~l~~~~~~~~~~~e-l~~~~~--------~~--~~~------~---------------~---~~~~~~~~~ 170 (251)
T PRK10258 126 LYRVVRPGGVVAFTTLVQGSLPE-LHQAWQ--------AV--DER------P---------------H---ANRFLPPDA 170 (251)
T ss_pred HHHHcCCCeEEEEEeCCCCchHH-HHHHHH--------Hh--ccC------C---------------c---cccCCCHHH
Confidence 99999999999998865432221 111100 00 000 0 0 001556788
Q ss_pred HHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhccCCCCCC----CCCCCCHhHHHHH
Q 017369 272 FKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLGALGDGNQ----DQSTLSADEWEVA 330 (372)
Q Consensus 272 l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ls~~e~e~~ 330 (372)
+..+++..|++..... +.. .-+...++++.++.+|.+.. ..+.++..+++.+
T Consensus 171 l~~~l~~~~~~~~~~~-~~~------~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~ 226 (251)
T PRK10258 171 IEQALNGWRYQHHIQP-ITL------WFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRL 226 (251)
T ss_pred HHHHHHhCCceeeeeE-EEE------ECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Confidence 8899988888653321 111 11334555555555544332 2466888887754
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.81 E-value=3.6e-18 Score=156.25 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=126.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+.++|+.
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCcc
Confidence 455666677789999999999999988888665455899999999999999998652 246899999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH---HHHHHhhhcCCccCCeEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~---~~~~l~~~~~~~~~~~~~ 229 (372)
+.++ ++++||+|++..+++|+ +..+...++++++++|||||+|+++.+.... ....+..
T Consensus 110 ~~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~----------- 171 (263)
T PTZ00098 110 KKDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA----------- 171 (263)
T ss_pred cCCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH-----------
Confidence 7776 67899999999888886 4457889999999999999999987542210 0000000
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
+. .. ....+.+.+.+.++++++||+.+...+..+++...
T Consensus 172 -------~~------------------~~---~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 172 -------YI------------------KK---RKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred -------HH------------------Hh---cCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 00 00 00025678899999999999999988877776544
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.76 E-value=1.5e-17 Score=148.67 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHh--CCCCCEEEEecCCccccHHHHHHcCCCEEE
Q 017369 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~ 111 (372)
+...++|+++|..||.. +.. .++.....|.+.++..+. ..++.+|||+|||+|..+..+......+|+
T Consensus 9 ~~v~~~f~~iA~~YD~~-n~~---------~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~ 78 (226)
T PRK05785 9 EELQEAYNKIPKAYDRA-NRF---------ISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVV 78 (226)
T ss_pred HHHHHHHHhhhHHHHHh-hhh---------ccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence 44567999999999853 221 123444567666655442 245789999999999988888765345899
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
|+|+|++|++.|+++. .++++|+.++|+ ++++||+|++.+++||+ .++.+++++
T Consensus 79 gvD~S~~Ml~~a~~~~-----------------~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e 132 (226)
T PRK05785 79 ALDYAENMLKMNLVAD-----------------DKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAE 132 (226)
T ss_pred EECCCHHHHHHHHhcc-----------------ceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHH
Confidence 9999999999997642 246889988888 78999999999999987 568899999
Q ss_pred HHHhcCCCc
Q 017369 192 VSALLRPGG 200 (372)
Q Consensus 192 i~~~LkpgG 200 (372)
+.++|||.+
T Consensus 133 ~~RvLkp~~ 141 (226)
T PRK05785 133 FTRVSRKQV 141 (226)
T ss_pred HHHHhcCce
Confidence 999999953
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.76 E-value=6.6e-18 Score=142.87 Aligned_cols=141 Identities=25% Similarity=0.376 Sum_probs=102.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..+...+. +++|+|+|+.+++. . .+.....+....+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~--------------~~~~~~~~~~~~~~----- 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R--------------NVVFDNFDAQDPPF----- 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T--------------TSEEEEEECHTHHC-----
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h--------------hhhhhhhhhhhhhc-----
Confidence 46789999999999999988866655 99999999999988 1 12223332323333
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH-HHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV-IIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~-~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|+|..+++|+ .++..+|+++.++|||||++++++++... ........ .+...
T Consensus 75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~------------~~~~~---- 134 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW------------RYDRP---- 134 (161)
T ss_dssp HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC------------CGTCH----
T ss_pred cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc------------CCcCc----
Confidence 56899999999999998 57999999999999999999999987531 11111110 00000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEe
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFV 286 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~ 286 (372)
.+ ... ++++.+.+.++++++||+++++
T Consensus 135 -------~~--------~~~----~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 135 -------YG--------GHV----HFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp -------HT--------TTT----EEBBHHHHHHHHHHTTEEEEE-
T ss_pred -------cC--------cee----ccCCHHHHHHHHHHCCCEEEEC
Confidence 00 011 4778999999999999999874
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=8.4e-18 Score=133.62 Aligned_cols=109 Identities=29% Similarity=0.475 Sum_probs=89.3
Q ss_pred CCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~ 161 (372)
|+.+|||+|||+|..+..+++ ....+|+|+|+|+.|++.|+++... .+...++.++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~i~~~~~d~~~~~~------ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--------EGLSDRITFVQGDAEFDPD------ 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--------TTTTTTEEEEESCCHGGTT------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECccccCcc------
Confidence 578999999999999999988 3666899999999999999999842 33467899999999 3332
Q ss_pred CCCCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||+|++.. ++++++.. ++...+++.+.+.|+|||+++++.+
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cCCCCCEEEECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 346799999999 66644332 6788999999999999999998763
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=5e-18 Score=147.82 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=92.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-++.+|||+|||-|.++..+++.+ ..|+|+|+|+.+|+.|+.+.... ...+.+.+..++++.. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----A 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----c
Confidence 488999999999998888888776 59999999999999999988742 2236677777776654 4
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.++||+|+|..+++|+ +++..+++++.+++||||.+++++++..
T Consensus 122 ~~~FDvV~cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 122 GGQFDVVTCMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred CCCccEEEEhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 4899999999999998 6788999999999999999999999864
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.75 E-value=8.1e-18 Score=129.16 Aligned_cols=95 Identities=27% Similarity=0.437 Sum_probs=82.6
Q ss_pred EEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeE
Q 017369 89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~ 168 (372)
||+|||+|..+..+...+..+|+|+|+|+.+++.++++... ..+.+.++|+.++++ ++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~------------~~~~~~~~d~~~l~~-----~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN------------EGVSFRQGDAEDLPF-----PDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT------------STEEEEESBTTSSSS------TT-EEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc------------cCchheeehHHhCcc-----ccccccc
Confidence 89999999999999887667899999999999999998863 346699999999998 7899999
Q ss_pred EEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 169 V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
|++..+++|+ ++...+++++.|+|||||++++
T Consensus 64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999997 7899999999999999999875
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.74 E-value=3.8e-17 Score=152.99 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|++|++.|+++.. ..++.++.+|+.++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence 46789999999999988887664 34589999999999999998754 2257889999988877
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC-hHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|++..+++|+ .+...+|+++.++|||||.+++..+. ........
T Consensus 175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~------------------------ 226 (340)
T PLN02490 175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF------------------------ 226 (340)
T ss_pred CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH------------------------
Confidence 57899999999999986 44568999999999999998775432 11111000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHH
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEF 292 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~ 292 (372)
+...|. .+.+.+++.++++++||+.++...+...
T Consensus 227 -------~~~~~~-----------~~~t~eEl~~lL~~aGF~~V~i~~i~~~ 260 (340)
T PLN02490 227 -------FADVWM-----------LFPKEEEYIEWFTKAGFKDVKLKRIGPK 260 (340)
T ss_pred -------hhhhhc-----------cCCCHHHHHHHHHHCCCeEEEEEEcChh
Confidence 000000 1335688999999999999988765543
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.73 E-value=9.5e-17 Score=143.75 Aligned_cols=165 Identities=20% Similarity=0.252 Sum_probs=122.2
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++... .++..++.++.+|+...++ .+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~--------~gl~~~i~~~~~d~~~~~~------~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA--------LGLQGRIRIFYRDSAKDPF------PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--------cCCCcceEEEecccccCCC------CC
Confidence 379999999999998887653 45899999999999999998864 3445678999999866554 35
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCC
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKS 244 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~ 244 (372)
+||+|++..+++|+ .+...+++++.++|+|||++++..+..... ..
T Consensus 67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------------------~~--------- 112 (224)
T smart00828 67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL---------------------SA--------- 112 (224)
T ss_pred CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC---------------------cc---------
Confidence 89999999999987 457899999999999999998876422100 00
Q ss_pred CCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHHHHhc
Q 017369 245 SRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELMRRLG 310 (372)
Q Consensus 245 ~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (372)
.+. .....|+.+...+.++++++||++++..++..-+..+..++.|.+-..++.
T Consensus 113 ---~~~---------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 166 (224)
T smart00828 113 ---IEH---------EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLY 166 (224)
T ss_pred ---ccc---------cccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhHHHHHHHhc
Confidence 000 000114667888999999999999998887776655554555555444443
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.72 E-value=3e-16 Score=141.59 Aligned_cols=146 Identities=27% Similarity=0.419 Sum_probs=113.0
Q ss_pred chhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEE
Q 017369 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYY 110 (372)
Q Consensus 33 ~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v 110 (372)
.+...++|+.++.+|+...... . ......|...++......++.+|||+|||+|..+..++... ..++
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v 79 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLL-S---------FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEV 79 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-h---------cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeE
Confidence 4556789999999997421111 0 12234566666666666678999999999999998887765 3689
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (372)
+|+|+++.+++.|+++... .+...++.++.+|+.+.++ +.++||+|++.+++++. .+...+++
T Consensus 80 ~~~D~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~ 142 (239)
T PRK00216 80 VGLDFSEGMLAVGREKLRD--------LGLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALR 142 (239)
T ss_pred EEEeCCHHHHHHHHHhhcc--------cccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHH
Confidence 9999999999999998753 2234468899999987665 56789999999999887 45778999
Q ss_pred HHHHhcCCCcEEEEE
Q 017369 191 NVSALLRPGGTFIGT 205 (372)
Q Consensus 191 ~i~~~LkpgG~li~~ 205 (372)
++.++|+|||.+++.
T Consensus 143 ~~~~~L~~gG~li~~ 157 (239)
T PRK00216 143 EMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHhccCCcEEEEE
Confidence 999999999998764
No 21
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.72 E-value=3.9e-16 Score=142.83 Aligned_cols=172 Identities=20% Similarity=0.213 Sum_probs=117.0
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+.+++|.+|||||||.|..+..++.....+|+|+.+|++..+.|++++.. .++...+.+.+.|.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~--------~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIRE--------AGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHC--------STSSSTEEEEES-G
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEeec
Confidence 3455566677889999999999999999999887455899999999999999999875 55667899999998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHhhhcCCccCCeE
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREVEGLAIGNSV 228 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~~~~~~~~~~~~ 228 (372)
.+++ .+||.|++..+++|+ ...+...+++++.++|||||.+++.+. +...... .. .
T Consensus 122 ~~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~---~~----~---- 180 (273)
T PF02353_consen 122 RDLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE---RR----S---- 180 (273)
T ss_dssp GG-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC---TT----C----
T ss_pred cccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh---cC----C----
Confidence 7643 489999999999998 556788999999999999999986542 2211100 00 0
Q ss_pred EEEEeCchhhh-cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 229 YWIRLDEEFAD-KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 229 ~~i~f~~~~~~-~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
...... ..||.. ++++.+.+...+++.||+++...++..-|...
T Consensus 181 -----~~~~i~kyiFPgg-------------------~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~T 225 (273)
T PF02353_consen 181 -----SSDFIRKYIFPGG-------------------YLPSLSEILRAAEDAGLEVEDVENLGRHYART 225 (273)
T ss_dssp -----CCHHHHHHTSTTS----------------------BHHHHHHHHHHTT-EEEEEEE-HHHHHHH
T ss_pred -----CceEEEEeeCCCC-------------------CCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHH
Confidence 000111 122321 37788889899999999999999888776544
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.72 E-value=2.8e-16 Score=156.19 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=119.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++....+.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++... ...++.|+++|+.+.+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~----------~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG----------RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc----------CCCceEEEEcCcccCC
Confidence 334444567889999999999988888765555899999999999999887642 2346899999998877
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCc
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~ 235 (372)
+ ++++||+|+|..+++|+ .++..++++++++|||||.++++.+...... ..
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------------------~~ 378 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPGT--------------------PS 378 (475)
T ss_pred C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCC--------------------Cc
Confidence 6 56789999999999998 5677999999999999999998764321000 00
Q ss_pred hhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHH
Q 017369 236 EFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHE 295 (372)
Q Consensus 236 ~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~ 295 (372)
..... + +... ...+.+...+.++++++||+++...++.+-+..
T Consensus 379 ~~~~~-------~-------~~~~---g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 379 PEFAE-------Y-------IKQR---GYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred HHHHH-------H-------HHhc---CCCCCCHHHHHHHHHHCCCeeeeeecchHHHHH
Confidence 00000 0 0000 002557788999999999999988776665433
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=1.2e-16 Score=146.02 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
..++..+...++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++ ++.++++|+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVR 82 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChh
Confidence 345555556678999999999999998887653 45899999999999999653 3678899987
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+++ ++++||+|+|+.++||+ .+...++++++++|||||.+++.++.
T Consensus 83 ~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 83 DWK------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 653 35789999999999997 45788999999999999999988764
No 24
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=9e-17 Score=144.91 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+-++.++..+.+.||.+|||||||.|..+..++.....+|+|+++|+++.+.+++++.. .++..+++++..|
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~--------~gl~~~v~v~l~d 130 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA--------RGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH--------cCCCcccEEEecc
Confidence 34556667778999999999999999999999887667999999999999999998875 4556689999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CChHHHHHHHhhhcCCccCCeEE
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDANVIIKKLREVEGLAIGNSVY 229 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~~~~~~l~~~~~~~~~~~~~ 229 (372)
..++. +.||-|++..+++|+ ..+....+|+.+.++|+|||.+++.+ .....-.
T Consensus 131 ~rd~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~---------------- 184 (283)
T COG2230 131 YRDFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEF---------------- 184 (283)
T ss_pred ccccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCccc----------------
Confidence 87654 459999999999998 66789999999999999999977543 2221000
Q ss_pred EEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHH
Q 017369 230 WIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVH 294 (372)
Q Consensus 230 ~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~ 294 (372)
. . ...|-.+|-|.-. ++++.+.+.+.+.++||.+....++..-|.
T Consensus 185 ~-~------------~~~~i~~yiFPgG-------~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa 229 (283)
T COG2230 185 R-R------------FPDFIDKYIFPGG-------ELPSISEILELASEAGFVVLDVESLRPHYA 229 (283)
T ss_pred c-c------------chHHHHHhCCCCC-------cCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence 0 0 0112222222111 477888999999999999999888776553
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.71 E-value=2.5e-16 Score=140.62 Aligned_cols=139 Identities=21% Similarity=0.378 Sum_probs=110.4
Q ss_pred HHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeC
Q 017369 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDI 115 (372)
Q Consensus 38 ~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~ 115 (372)
++|+.++.+||...... .......|...++......++.+|||+|||+|..+..++.... .+++|+|+
T Consensus 3 ~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~ 72 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLL----------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDF 72 (223)
T ss_pred hHHHHHHhhhhHHHHHH----------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEEC
Confidence 58999999999653221 1123456666676666666889999999999999998887655 48999999
Q ss_pred ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHh
Q 017369 116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195 (372)
Q Consensus 116 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~ 195 (372)
++.+++.++++... ..++.+..+|+.+.++ +.++||+|++.+++++. .++..+++++.+.
T Consensus 73 ~~~~~~~~~~~~~~-----------~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~~ 132 (223)
T TIGR01934 73 SSEMLEVAKKKSEL-----------PLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYRV 132 (223)
T ss_pred CHHHHHHHHHHhcc-----------CCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHHH
Confidence 99999999887641 3368899999988765 45789999999999886 5678999999999
Q ss_pred cCCCcEEEEEe
Q 017369 196 LRPGGTFIGTM 206 (372)
Q Consensus 196 LkpgG~li~~~ 206 (372)
|+|||++++..
T Consensus 133 L~~gG~l~~~~ 143 (223)
T TIGR01934 133 LKPGGRLVILE 143 (223)
T ss_pred cCCCcEEEEEE
Confidence 99999988643
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=1.5e-16 Score=149.38 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=88.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...++.+|||||||+|.++..++..+...|+|+|+|+.|+..++..... .+...++.++.+|+.++++
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--------~~~~~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--------LGNDQRAHLLPLGIEQLPA--- 186 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--------cCCCCCeEEEeCCHHHCCC---
Confidence 33356789999999999999999887777899999999999765443221 0113368999999987764
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++.||+|+|..+++|. .++..+|++++++|+|||.+++++
T Consensus 187 ---~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 ---LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ---cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 4689999999999987 567889999999999999999875
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=2e-16 Score=143.69 Aligned_cols=109 Identities=21% Similarity=0.404 Sum_probs=90.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
...++.+|||+|||+|..+..++. .+..+++|+|+|+.|++.|++++.. .+...++.++++|+.+.++
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~--------~~~~~~v~~~~~d~~~~~~- 123 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRDIAI- 123 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEeCChhhCCC-
Confidence 356789999999999998887765 2446899999999999999999863 2234479999999987664
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+|+|++.+++||+ +..+...++++++++|||||.|+++.
T Consensus 124 ------~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 124 ------ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ------CCCCEEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 358999999999987 45667899999999999999998864
No 28
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.70 E-value=4.7e-16 Score=131.77 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=120.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.|+++|||+|||.|.++..+........+|+|++++.+..|.++. +.++++|+.+- +. .
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~g-L~--~ 70 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEG-LA--D 70 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHh-Hh--h
Confidence 45799999999999999998888777778999999999999887753 66799998652 11 1
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhh-cCCccCCeEEEEEeCchhhh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREV-EGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~f~~~~~~ 239 (372)
.++++||.|+++.+++++ ..+..+|+++.|+ |...++++||...+..++.-. .|.
T Consensus 71 f~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~Gr----------------- 126 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGR----------------- 126 (193)
T ss_pred CCCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCC-----------------
Confidence 178999999999999987 7788898888665 668899999998776665543 111
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
.|-. -...|.|+-...+ ++.+..+|+++|++.|+++++...+.
T Consensus 127 --mPvt--~~lPy~WYdTPNi----h~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 127 --MPVT--KALPYEWYDTPNI----HLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred --CCCC--CCCCCcccCCCCc----ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 1111 1122444444444 48899999999999999999887443
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=2.3e-16 Score=132.54 Aligned_cols=109 Identities=30% Similarity=0.476 Sum_probs=91.0
Q ss_pred CCCCEEEEecCCccccHHHHHH-c-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK-A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+.+|||+|||+|.++..++. . ...+++|+|+|+.|++.|+++++. .++. +++|+++|+.+++- .+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--------~~~~-ni~~~~~d~~~l~~--~~ 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--------LGLD-NIEFIQGDIEDLPQ--EL 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--------TTST-TEEEEESBTTCGCG--CS
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--------cccc-ccceEEeehhcccc--cc
Confidence 4578999999999999999984 2 456899999999999999998763 2333 79999999998651 01
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+ +.||+|++..+++|+ .+...+++++.+.|++||.+++..+.
T Consensus 71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3 789999999999887 67789999999999999999988877
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=2.4e-16 Score=146.47 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=87.1
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+...++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++..... .....++.+..+++.+++.
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--------~~~~~~v~~~~~~ie~lp~-- 185 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--------LDNDKRAILEPLGIEQLHE-- 185 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--------hccCCCeEEEECCHHHCCC--
Confidence 334567899999999999998888877766899999999999865432110 0012357788888877664
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...||+|+|..+++|. .++..+|++++++|||||.|++++.
T Consensus 186 ----~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 ----LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ----CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 3589999999999997 5678899999999999999998753
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.68 E-value=8.5e-16 Score=138.95 Aligned_cols=110 Identities=18% Similarity=0.374 Sum_probs=91.0
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc---CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
...++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|++++.. .+...++.++++|+.+.++
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~- 120 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVEI- 120 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECChhhCCC-
Confidence 3467889999999999998888763 356899999999999999998763 1223468999999987765
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+|+|++.+++||+ ...+...+++++.++|+|||.++++.+
T Consensus 121 ------~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 ------KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ------CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 358999999999987 456788999999999999999998753
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=1.1e-15 Score=133.93 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=86.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++.... .++ .++.+.++|+.+.++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~----- 92 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAA--------ENL-DNLHTAVVDLNNLTF----- 92 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CcceEEecChhhCCc-----
Confidence 4467899999999999998888764 4899999999999999987763 122 257888899876654
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+++||+|+|..++||+ +..+...+++++.++|+|||++++
T Consensus 93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3579999999999876 556789999999999999999654
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=8.1e-16 Score=140.73 Aligned_cols=112 Identities=20% Similarity=0.355 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+.++..+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++.. ++.++.+|+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADI 85 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECch
Confidence 444555556677899999999999999888765 34689999999999999998764 478899998
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.... +.++||+|+++.++||+ .+...+++++.++|||||.+++++|+
T Consensus 86 ~~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQ------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccC------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 7543 34689999999999987 45778999999999999999998765
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=3.9e-16 Score=121.76 Aligned_cols=96 Identities=27% Similarity=0.521 Sum_probs=79.0
Q ss_pred EEEecCCccccHHHHHHcC----CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
|||+|||+|..+..+.... ..+++|+|+|++|++.|+++.... ..+++++++|+.+++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----------~~~~~~~~~D~~~l~~-----~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----------GPKVRFVQADARDLPF-----SD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----------TTTSEEEESCTTCHHH-----HS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----------CCceEEEECCHhHCcc-----cC
Confidence 7999999999999988753 268999999999999999988631 2378999999998776 56
Q ss_pred CCeeEEEecc-cccccCCCHHHHHHHHHHHHHhcCCCc
Q 017369 164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG 200 (372)
Q Consensus 164 ~~fD~V~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpgG 200 (372)
++||+|+|.+ +++|+ +.++...+++++.++|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence 7999999955 48886 67889999999999999998
No 35
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=2.5e-15 Score=144.22 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=120.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++.+|||+|||+|..+..++.....+|+|+|+|+++++.|+++... ..+++..+|..
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~------------l~v~~~~~D~~ 223 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG------------LPVEIRLQDYR 223 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------------CeEEEEECchh
Confidence 334455566788999999999999999888776555899999999999999998752 24777888875
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 232 (372)
++ +++||+|++..+++|+ ...+...+++++.++|||||++++.+...... .
T Consensus 224 ~l--------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-----------~-------- 274 (383)
T PRK11705 224 DL--------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-----------D-------- 274 (383)
T ss_pred hc--------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-----------C--------
Confidence 42 3689999999999887 44667899999999999999998876432110 0
Q ss_pred eCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 233 LDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 233 f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
.....|-.+|.|.-. ++.+.+.+.+.++ .||++.+..++...|...+
T Consensus 275 ----------~~~~~~i~~yifp~g-------~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL 321 (383)
T PRK11705 275 ----------TNVDPWINKYIFPNG-------CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTL 321 (383)
T ss_pred ----------CCCCCCceeeecCCC-------cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHH
Confidence 001113233333111 3667777777655 6999999888888775443
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=4.1e-15 Score=130.15 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+ ..|+|+|+|+.|++.++++... .++ ++.+.++|+...++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~--------~~~--~v~~~~~d~~~~~~----- 91 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAR--------ENL--PLRTDAYDINAAAL----- 91 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHH--------hCC--CceeEeccchhccc-----
Confidence 3456799999999999999888754 4899999999999999887653 222 36777778765443
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+++||+|++..++|++ +..+...+++++.++|+|||++++.
T Consensus 92 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3579999999999886 4567889999999999999986543
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.63 E-value=2.5e-14 Score=127.59 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=113.5
Q ss_pred HHHHHHHHHh--CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 72 ~~k~~l~~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
++..++..+. ..++.+|||+|||+|.++..++... ..|+|+|+|++|++.|++++.. .....++.+.++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~--------~~~~~~i~~~~~ 111 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQG--------RDVAGNVEFEVN 111 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEC
Confidence 3333443333 3568899999999999999887654 4899999999999999998763 222346899999
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH-HHHHHHhhhcCCccCCeE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN-VIIKKLREVEGLAIGNSV 228 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~-~~~~~l~~~~~~~~~~~~ 228 (372)
|+.+.+ ++||+|++..+++|+ +..+...+++++.+++++++++.+...... .....+...
T Consensus 112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------- 172 (219)
T TIGR02021 112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGEL--------- 172 (219)
T ss_pred ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhh---------
Confidence 987532 689999999998876 456788899999999987765554322211 111111110
Q ss_pred EEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 229 YWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 229 ~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
++.. ....+.+.++.+++.++++++||+++....+..
T Consensus 173 -------------~~~~-------------~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 173 -------------FPGS-------------SRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred -------------CcCc-------------ccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 0000 000112467888999999999999998864443
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-14 Score=130.44 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc----C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.++.+|||+|||+|..+..++.. + ..+|+|+|+|+.|++.|+++... .++.+.+.++..++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~~~~~~~~l~~- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------------PGVTFRQAVSDELVA- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------------CCCeEEEEecccccc-
Confidence 46789999999999987776542 2 24799999999999999887542 235666666665554
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++++||+|+|++++||+ +.++...+++++.++++ |+.++.
T Consensus 126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC-eeEEEe
Confidence 46799999999999998 33456789999999998 444443
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=4.1e-15 Score=134.15 Aligned_cols=106 Identities=25% Similarity=0.459 Sum_probs=89.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++.. .++.++.+|+.+.++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~----- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------------ENVQFICGDAEKLPL----- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------------CCCeEEecchhhCCC-----
Confidence 345799999999999998887754 3469999999999999988764 157889999988776
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++++||+|++..++||+ .+...++.++.++|+|||.+++.++...
T Consensus 95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 56889999999999987 5678999999999999999999887554
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.62 E-value=1e-15 Score=134.33 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
|.+|||+|||+|.++..+++.+ +.|+|+|+++.|++.|++... +.+- ....+..++++.+.|++... +
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~-~dP~--~~~~~~y~l~~~~~~~E~~~--------~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKK-MDPV--LEGAIAYRLEYEDTDVEGLT--------G 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhh-cCch--hccccceeeehhhcchhhcc--------c
Confidence 4789999999999999998766 499999999999999999843 2110 01122335677777776543 5
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.||.|+|+.+++|+ .++..++..+.+.|||||.+++++.+..
T Consensus 158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 69999999999998 8899999999999999999999987764
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=2.6e-14 Score=131.83 Aligned_cols=108 Identities=20% Similarity=0.350 Sum_probs=87.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||+|..+..++.. + .++|+|+|+|+.|++.|+++.... ++ .++.+.++|+.++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------g~-~~v~~~~~d~~~l~~-- 142 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------GY-TNVEFRLGEIEALPV-- 142 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------CC-CCEEEEEcchhhCCC--
Confidence 3568899999999999877665543 2 347999999999999999987531 22 368899999988776
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|+++.++++. .+...+++++.++|||||++++..
T Consensus 143 ---~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 143 ---ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ---CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 56799999999999876 456789999999999999998754
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.60 E-value=4.6e-14 Score=131.51 Aligned_cols=155 Identities=14% Similarity=0.182 Sum_probs=101.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|+++....... .....++.|.++|+.++ +
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence 57899999999999999888754 48999999999999999987531000 00023578888887532 4
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~ 243 (372)
++||+|+|..+++|+ ..+....+++.+.+ +.+||.++...|... ....+... + ..|+
T Consensus 211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~~~-~~~~l~~~-----g--------------~~~~ 267 (315)
T PLN02585 211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPKTL-YYDILKRI-----G--------------ELFP 267 (315)
T ss_pred CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCcch-HHHHHHHH-----H--------------hhcC
Confidence 689999999999886 33445667777775 456666554444431 11111110 0 0011
Q ss_pred CCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 244 SSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 244 ~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+. .....|+.+.++++++++++||+++...
T Consensus 268 g~~-------------~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 268 GPS-------------KATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CCC-------------cCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 000 0001146688999999999999988665
No 43
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.60 E-value=1.1e-13 Score=129.24 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=101.6
Q ss_pred CccccchhhhHHHHHHHH--hhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc
Q 017369 28 SHFLEDESTKVFARKVAD--HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA 105 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~va~--~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~ 105 (372)
..+.-++.-...|++|.. .|- +. |.+ ...+..+...+.... .++.+|||+|||+|..+..++..
T Consensus 19 ~~~~yd~~G~~lf~~i~~~peYy--~t-----r~E-----~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 19 PKYFYDARGSELFEQICELPEYY--PT-----RTE-----AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred chhcccchHHHHHHHHHCCCccc--cH-----HHH-----HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHh
Confidence 344445566678888854 221 11 111 123344444443332 46789999999999999988876
Q ss_pred C--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-cccccccCCCCCeeEEEecccccccCCCH
Q 017369 106 K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTE 182 (372)
Q Consensus 106 ~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~ 182 (372)
. ..+|+|+|+|++|++.|++++... ....++.++++|+.+ .++.... ......++++..+++++ +.
T Consensus 85 l~~~~~~~~iDiS~~mL~~a~~~l~~~--------~p~~~v~~i~gD~~~~~~~~~~~-~~~~~~~~~~gs~~~~~--~~ 153 (301)
T TIGR03438 85 LRQPARYVPIDISADALKESAAALAAD--------YPQLEVHGICADFTQPLALPPEP-AAGRRLGFFPGSTIGNF--TP 153 (301)
T ss_pred hccCCeEEEEECCHHHHHHHHHHHHhh--------CCCceEEEEEEcccchhhhhccc-ccCCeEEEEecccccCC--CH
Confidence 4 457999999999999999887521 112357788999976 3331110 01133445545567765 56
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 183 ARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...+|++++++|+|||.|++.+
T Consensus 154 ~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 154 EEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 788999999999999999998765
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.60 E-value=4.1e-14 Score=127.44 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=103.0
Q ss_pred hhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEe
Q 017369 36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID 114 (372)
Q Consensus 36 ~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD 114 (372)
..+.++.+|+.|......... +..+++..-..+... ...++.+|||+|||+|..+..+...+ ..++|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD 77 (233)
T PRK05134 8 EIAKFSALAARWWDPNGEFKP---------LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGID 77 (233)
T ss_pred HHHHHHHHHHHHhccCCCcHH---------HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEc
Confidence 456778888866532221111 223333322333322 34578899999999999888887654 4799999
Q ss_pred CChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 115 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+++.+++.|+++.... ...+.+...|+.+.+.. ..++||+|++..+++|. .+...+++++.+
T Consensus 78 ~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~ 139 (233)
T PRK05134 78 ASEENIEVARLHALES----------GLKIDYRQTTAEELAAE----HPGQFDVVTCMEMLEHV----PDPASFVRACAK 139 (233)
T ss_pred CCHHHHHHHHHHHHHc----------CCceEEEecCHHHhhhh----cCCCccEEEEhhHhhcc----CCHHHHHHHHHH
Confidence 9999999999886521 22467777777655421 34789999999999887 457789999999
Q ss_pred hcCCCcEEEEEeCCh
Q 017369 195 LLRPGGTFIGTMPDA 209 (372)
Q Consensus 195 ~LkpgG~li~~~~~~ 209 (372)
.|+|||.++++.++.
T Consensus 140 ~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 140 LVKPGGLVFFSTLNR 154 (233)
T ss_pred HcCCCcEEEEEecCC
Confidence 999999999887654
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.58 E-value=2.5e-14 Score=125.78 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+|||+|..+..+... +...++|+|+|+.|++.|+++.. ++.+.++|+.+ ++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~---- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF---- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC----
Confidence 356789999999999999888765 45689999999999999988654 36778889877 55
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|++..+++|+ +.++..++++++.+++ ++++++..
T Consensus 102 -~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 102 -KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 67899999999999997 5678899999999998 45665544
No 46
>PRK06922 hypothetical protein; Provisional
Probab=99.58 E-value=1.8e-14 Score=143.07 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~ 159 (372)
.++.+|||+|||+|..+..++.. +...|+|+|+|+.|++.|+++.... ..++.++++|+.+++ +
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----------g~~ie~I~gDa~dLp~~f--- 483 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----------GRSWNVIKGDAINLSSSF--- 483 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----------CCCeEEEEcchHhCcccc---
Confidence 46889999999999988877664 4568999999999999999876421 235788999988765 4
Q ss_pred cCCCCCeeEEEecccccccCC---------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~---------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++||+|+++.++|+++. +..+...+|+++.++|||||.+++..
T Consensus 484 --edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 484 --EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5689999999999987632 24578899999999999999998864
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.56 E-value=4.8e-14 Score=127.11 Aligned_cols=116 Identities=28% Similarity=0.450 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
..++....+.++.+|||+|||+|.++..++... .++++|+|+|+.+++.|+++... ...++.+..+|+
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----------~~~~~~~~~~d~ 78 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----------LGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----------CCCceEEEeccc
Confidence 334555567788999999999999998887653 45899999999999999887321 134688999999
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...++ ++++||+|++..+++|+ .++..+++++.++|+|||.+++..++
T Consensus 79 ~~~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 79 DGLPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 87776 56799999999999987 56788999999999999999987764
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=4e-14 Score=131.42 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=85.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++... .++ ++.+.+.|+....+ +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~--------~~l--~v~~~~~D~~~~~~------~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK--------ENL--NIRTGLYDINSASI------Q 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH--------cCC--ceEEEEechhcccc------c
Confidence 44599999999999999887754 4899999999999999988763 222 57888888866443 4
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++||+|++..++||+ +.++...+++++.++|+|||++++..
T Consensus 183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999999987 55688899999999999999976543
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=8.2e-16 Score=119.45 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=61.4
Q ss_pred EEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCee
Q 017369 89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD 167 (372)
||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++..... .........+..+.... . ..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~--~-~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---------NDNFERLRFDVLDLFDY--D-PPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C--C-C----S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------CcceeEEEeecCChhhc--c-cccccc
Confidence 79999999999998876 45579999999999988888776321 11233333333322110 0 225999
Q ss_pred EEEecccccccCCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 168 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
+|++..++||+ +++..++++++++|||||+|
T Consensus 69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 99999999998 67889999999999999986
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=3.9e-14 Score=121.76 Aligned_cols=106 Identities=16% Similarity=0.281 Sum_probs=84.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.++||+|||.|+.+..++..+. .|+++|+|+.+++.+.+..... ...++..+.|+.+..+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~----------~l~i~~~~~Dl~~~~~----- 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE----------GLDIRTRVADLNDFDF----- 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT----------T-TEEEEE-BGCCBS------
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc----------CceeEEEEecchhccc-----
Confidence 34568999999999999999988776 7999999999999988776532 3358889999987665
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++.||+|++..+++|+ ..+....+++++...++|||++++.+
T Consensus 92 -~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 92 -PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3689999999899987 55677889999999999999977643
No 51
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.55 E-value=6.3e-14 Score=119.10 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=85.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+....-.++||+|||.|.++..++.. ...++++|+|+.+++.|++|... ..++.|+++|+.+..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~---- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW---- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT------
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC----
Confidence 44445689999999999999998765 56899999999999999999874 347999999996643
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+.||+|+++.+++|+ .+.+++..++.++...|+|||.+|+...
T Consensus 103 --P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 103 --PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ---SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 67899999999999886 4457899999999999999999887654
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=123.27 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=94.3
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......+..+|.|+|||+|..+..+..+ +...++|+|.|++||+.|+++.. +++|..+|+.+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW 87 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence 455556667889999999999888777765 55679999999999999998876 589999999764
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. +..++|+++++.++||+ ++--.+|..+...|.|||.+.+.+|+.
T Consensus 88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 4 67899999999999999 556689999999999999999999864
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.55 E-value=1.2e-13 Score=122.03 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc-c--cccCCCcCeEE
Q 017369 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-Q--RRKKFSFPARL 146 (372)
Q Consensus 70 ~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~--~~~~~~~~~~~ 146 (372)
+..+...+..+...++.+|||+|||.|.++..++..+. .|+|+|+|+.+++.+........... . ....-..++++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 34444444443345778999999999999999987655 79999999999998644321100000 0 00001346899
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++|+.+++.. ..+.||.|+...+++|+ +.+....+++.+.++|||||++++.+
T Consensus 99 ~~~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 99 FCGDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred EEccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99999876531 13579999998888887 66778899999999999999865443
No 54
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=121.27 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=87.2
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE-EEECcCcccc-cccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVH-LDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~-~~~~~~~ 162 (372)
...|||+|||||.....+-..+...|+++|+++.|-+.|.+++.+ +...++. |++++.++++ + +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E---------~k~~~~~~fvva~ge~l~~l-----~ 142 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE---------KKPLQVERFVVADGENLPQL-----A 142 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh---------ccCcceEEEEeechhcCccc-----c
Confidence 346799999999887766555677899999999999999998874 2244565 9999999887 4 6
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++|.|+|.+++.-. +++.+.|+++.++|||||++++-.
T Consensus 143 d~s~DtVV~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 143 DGSYDTVVCTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCCeeeEEEEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999999999998744 889999999999999999987643
No 55
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=3.4e-14 Score=129.95 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCcccc----HHHHHHcC------CCEEEEEeCChHHHHHHHHHhcCCCc-c-----------------c
Q 017369 83 RRGDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDAD-H-----------------H 134 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~----~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~-~-----------------~ 134 (372)
.++.+|||+|||+|.- +..+.... ..+|+|+|+|+.||+.|++..-.... + .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999973 33333321 24799999999999999975321000 0 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-...+..++.|.++|+.+.+. +.++||+|+|.++++|+ +.++...++++++++|+|||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0000122468999999988665 56899999999999997 56778899999999999999998753
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.54 E-value=5.1e-13 Score=119.98 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++... .+...++.+.++|+. .
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~--------~~~~~~i~~~~~d~~---~----- 123 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPE--------AGLAGNITFEVGDLE---S----- 123 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHh--------cCCccCcEEEEcCch---h-----
Confidence 35678999999999999988877654 699999999999999998763 222246888988843 2
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
.+++||+|++..+++|+ +.++...+++++.+.+++++ ++...+.. .....+..... .
T Consensus 124 ~~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~-~i~~~~~~-~~~~~~~~l~~-------------------~ 180 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSL-IFTFAPYT-PLLALLHWIGG-------------------L 180 (230)
T ss_pred ccCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeE-EEEECCcc-HHHHHHHHhcc-------------------c
Confidence 34789999999999875 44678889999998775444 33333322 11111111000 0
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhH
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHE 291 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~ 291 (372)
++.. .. ..+.+.++...+.++++++||++++...+..
T Consensus 181 ~~~~-----------~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 181 FPGP-----------SR--TTRIYPHREKGIRRALAAAGFKVVRTERISS 217 (230)
T ss_pred cCCc-----------cC--CCCccccCHHHHHHHHHHCCCceEeeeeccc
Confidence 0000 00 0011356778899999999999999875553
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.54 E-value=1.9e-13 Score=118.23 Aligned_cols=120 Identities=21% Similarity=0.227 Sum_probs=89.7
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
+.....++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++... .++. +++++++|+.+.
T Consensus 37 l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--------~~l~-~i~~~~~d~~~~ 107 (187)
T PRK00107 37 LAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--------LGLK-NVTVVHGRAEEF 107 (187)
T ss_pred HHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------cCCC-CEEEEeccHhhC
Confidence 333334556899999999999988887753 456899999999999999998874 2333 499999999775
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC-hHHHHHHHhh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLRE 218 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~l~~ 218 (372)
+. .++||+|++... .++..+++.++++|||||.+++..+. ....+..+..
T Consensus 108 ~~------~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 108 GQ------EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred CC------CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 42 468999998642 24568999999999999998876543 3333443333
No 58
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.54 E-value=8.8e-15 Score=125.47 Aligned_cols=187 Identities=17% Similarity=0.221 Sum_probs=128.1
Q ss_pred CCCCCCCccccchhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHH
Q 017369 22 QNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101 (372)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~ 101 (372)
.+......|++. .||..|+.++........ -..-..+..++......+-.++||+|||||.....
T Consensus 78 ~p~~pP~aYVe~-----LFD~~Ae~Fd~~LVdkL~----------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~ 142 (287)
T COG4976 78 TPEKPPSAYVET-----LFDQYAERFDHILVDKLG----------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEA 142 (287)
T ss_pred CCCCCchHHHHH-----HHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHhccCCccceeeecccCcCcccHh
Confidence 334444566666 999999999865443322 01223455566665555668999999999987776
Q ss_pred HHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCC
Q 017369 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST 181 (372)
Q Consensus 102 l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~ 181 (372)
+.. ...+++|+|||++|++.|.++--- -.+.++|+..+. ... .+.+||+|++.-++.|+
T Consensus 143 lR~-~a~~ltGvDiS~nMl~kA~eKg~Y--------------D~L~~Aea~~Fl--~~~-~~er~DLi~AaDVl~Yl--- 201 (287)
T COG4976 143 LRD-MADRLTGVDISENMLAKAHEKGLY--------------DTLYVAEAVLFL--EDL-TQERFDLIVAADVLPYL--- 201 (287)
T ss_pred HHH-HHhhccCCchhHHHHHHHHhccch--------------HHHHHHHHHHHh--hhc-cCCcccchhhhhHHHhh---
Confidence 643 455899999999999999876421 123445543211 111 45789999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEeccccc
Q 017369 182 EARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVD 261 (372)
Q Consensus 182 ~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~ 261 (372)
..+..++--+...|+|||.|.+++-+... +| .|.+..+.
T Consensus 202 -G~Le~~~~~aa~~L~~gGlfaFSvE~l~~------------------------------------~~---~f~l~ps~- 240 (287)
T COG4976 202 -GALEGLFAGAAGLLAPGGLFAFSVETLPD------------------------------------DG---GFVLGPSQ- 240 (287)
T ss_pred -cchhhHHHHHHHhcCCCceEEEEecccCC------------------------------------CC---Ceecchhh-
Confidence 77899999999999999999988743311 00 01111111
Q ss_pred CceeeeehHHHHHHHHHcCcEEEEec
Q 017369 262 CPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 262 ~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.|-.+.+.++.+++..||++|...
T Consensus 241 --RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 241 --RYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred --hhccchHHHHHHHHhcCceEEEee
Confidence 156677788999999999999875
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.53 E-value=9.1e-14 Score=128.06 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=82.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC----CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+..+|||+|||+|.++..++... ...++|+|+|+.|++.|+++.. ++.+.++|+.++++
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~~d~~~lp~- 147 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCVASSHRLPF- 147 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEEeecccCCC-
Confidence 3456789999999999888876542 2369999999999999987654 47889999998887
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
++++||+|++.++- ..++++.++|||||+|++.+|....+.
T Consensus 148 ----~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~ 188 (272)
T PRK11088 148 ----ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLF 188 (272)
T ss_pred ----cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchH
Confidence 67899999986542 235789999999999999998876543
No 60
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=2.6e-13 Score=120.36 Aligned_cols=130 Identities=19% Similarity=0.211 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc---ccccCCCcCe
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---QRRKKFSFPA 144 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~~~~ 144 (372)
..+..+...+..+...++.+|||+|||.|.++..++..+. .|+|+|+|+.+++.+........... ....-...++
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 3445555555544556778999999999999999987655 89999999999998754221000000 0000013468
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
++.++|+.+++.. ..+.||.|+-..+++++ +.+....++..+.++|+|||.+++
T Consensus 100 ~~~~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 100 TIYCGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999887531 12589999999888887 677889999999999999997443
No 61
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.53 E-value=2e-13 Score=119.42 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c-cccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V-HLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~-~~~~~~ 160 (372)
+++.+|||+|||+|.++..+.......++|+|+|+++++.|+++ ++.++++|+.+ + ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~---- 71 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF---- 71 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence 57789999999999998887665555789999999999988642 25678888764 2 23
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
++++||+|+++.++||+ .++..+++++.+.+ |.+++++|+.........-..+ ..... ..
T Consensus 72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~~~~----~~~~~---~~----- 131 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSILTK----GRMPV---TG----- 131 (194)
T ss_pred -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHHHhC----Ccccc---CC-----
Confidence 46789999999999998 56778888887765 4567788876443221111000 00000 00
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
.++ |.+.... +..+.+.+++.++++++||++++...+.
T Consensus 132 ~~~--------~~~~~~~----~~~~~s~~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 132 ELP--------YDWYNTP----NIHFCTIADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred CCC--------ccccCCC----CcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence 000 1110000 1136788999999999999999887443
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.53 E-value=9.3e-14 Score=122.20 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccc--ccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~--~~~ 158 (372)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++... .++ .++.++++|+ ..++ +
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~l~~~~-- 107 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--------EGL-TNLRLLCGDAVEVLLDMF-- 107 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEecCHHHHHHHHc--
Confidence 46789999999999999988765 345799999999999999988763 222 4689999998 5544 3
Q ss_pred ccCCCCCeeEEEecccccccCC----CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 159 VLADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
++++||+|++.+...+... .......+++++.++|||||.|++.+++......
T Consensus 108 ---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~ 164 (202)
T PRK00121 108 ---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY 164 (202)
T ss_pred ---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 5678999999876543210 0011467899999999999999999887765433
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.52 E-value=4.4e-13 Score=119.95 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=92.2
Q ss_pred HHHHHHHHHHh-CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.|+...+.... ...+.+|||+|||+|..+..++... ..++|+|+++.+++.++++.... + ..++.+.++
T Consensus 31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~ 100 (224)
T TIGR01983 31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKD--------P-LLKIEYRCT 100 (224)
T ss_pred HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHc--------C-CCceEEEeC
Confidence 45554443321 2347899999999999888877654 46999999999999999887531 1 115788888
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
|+.+.+.. ..++||+|++..+++|. .++..+++++.++|+|||.+++++++.
T Consensus 101 d~~~~~~~----~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 101 SVEDLAEK----GAKSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred CHHHhhcC----CCCCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 88765531 23789999999999987 567789999999999999999887654
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.52 E-value=3.7e-13 Score=108.59 Aligned_cols=110 Identities=20% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++..+...++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++.... + ..++.++.+|+...
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~-~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF--------G-VSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh--------C-CCceEEEecccccc
Confidence 4444556678899999999999999998753 468999999999999999887632 1 12578888887642
Q ss_pred -ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 -~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. ..++||+|++..... ....+++.+.+.|+|||.+++++
T Consensus 82 ~~~-----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 82 LED-----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Chh-----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 236899999876543 34589999999999999999876
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=2.9e-13 Score=120.54 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=82.1
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.+.++.+|||+|||+|.++..++..- .+.|+|+|+++.|++.+.++... ..++.++.+|+.+....
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY 135 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence 3566789999999999999998887653 45899999999999988776542 23688899998652100
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.. ..++||+|++.... ......+++++.++|||||.++++++.
T Consensus 136 ~~--l~~~~D~i~~d~~~------p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 136 AH--VVEKVDVIYQDVAQ------PNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred hh--ccccCCEEEECCCC------hhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 01 13569999864321 223456789999999999999998653
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.52 E-value=8e-13 Score=113.99 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|..+..++... .++|+|+|+|+.|++.++++.+. .++ .+++++++|+.+.. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--------~~~-~~i~~i~~d~~~~~------~ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--------LGL-NNVEIVNGRAEDFQ------H 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------hCC-CCeEEEecchhhcc------c
Confidence 47899999999999888876543 45799999999999999888763 222 25899999998753 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.. +++ ...+++.+.++|+|||.+++..
T Consensus 107 ~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 EEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEc
Confidence 57899999865 432 4567888999999999988764
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=4.6e-13 Score=121.07 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=105.3
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHH--HHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR--TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.-.|.+|||||||+|.++..++..+...|+|+|.++...-+.+ +++.+ ....+.++..-+++++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg----------~~~~~~~lplgvE~Lp---- 178 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG----------QDPPVFELPLGVEDLP---- 178 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC----------CCccEEEcCcchhhcc----
Confidence 3478999999999999999999999989999999997766532 23321 0112333323444444
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~ 239 (372)
..+.||+|+|..+|.|. .++...|.+++..|+|||.+++.+.-.+ |..-..+ +
T Consensus 179 --~~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~--------------g~~~~~L-~------ 231 (315)
T PF08003_consen 179 --NLGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVID--------------GDENTVL-V------ 231 (315)
T ss_pred --ccCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeec--------------CCCceEE-c------
Confidence 24789999999999997 7788999999999999999998762110 0000000 0
Q ss_pred cccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChh
Q 017369 240 KKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSH 290 (372)
Q Consensus 240 ~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~ 290 (372)
|. ..+. .+. --.++.+...+...++++||+-|+..+..
T Consensus 232 ---P~-~rYa-----~m~----nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 232 ---PE-DRYA-----KMR----NVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred ---cC-Cccc-----CCC----ceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 11 0010 000 11257888999999999999888876544
No 68
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.50 E-value=2.6e-13 Score=127.26 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=90.2
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
++......++.+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++... .++..+++++.+|+.+.
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------KGVADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh--------CCccceEEEEecCccCC
Confidence 3334445677899999999999999988764 457999997 7899999988764 34456799999999865
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++ + .+|+|++..++|+. +.+....+|++++++|+|||++++..
T Consensus 212 ~~-----~--~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 212 SY-----P--EADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC-----C--CCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 2 36999999988875 44567889999999999999987653
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.49 E-value=3.7e-13 Score=123.01 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.++.+|+|||||.|..+..++. ...++++|+|+++++++.|++.+.. ..++..+++|.++|+.+...
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~--- 191 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE--- 191 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc---
Confidence 3778999999998866555443 2456899999999999999998852 13456689999999987532
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+.||+|++. +++|+ +.++..++++++.+.|+|||++++....+
T Consensus 192 --~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 192 --SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred --ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecccc
Confidence 24689999999 88886 45678999999999999999999876433
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=5.3e-13 Score=117.74 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.+.++.+|||+|||+|..+..++... .++|+|+|+++++++.|++++.. .++..+++++.+|
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~--------~~~~~~v~~~~~d 132 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--------LGYWGVVEVYHGD 132 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCcEEEEECC
Confidence 3444455556788999999999999887776542 46899999999999999988763 2333468999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+... ...+||+|++..+++++ ..++.++|+|||++++.+.
T Consensus 133 ~~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 133 GKRGLE-----KHAPFDAIIVTAAASTI----------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cccCCc-----cCCCccEEEEccCcchh----------hHHHHHhcCcCcEEEEEEc
Confidence 876432 34689999999887754 1467899999999988653
No 71
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.48 E-value=4.3e-13 Score=111.21 Aligned_cols=130 Identities=24% Similarity=0.304 Sum_probs=93.5
Q ss_pred hhhhHHHHHHHHHHhCCCCC-EEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 67 KKLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..+..|++.......+.+.+ +|||+|||+|.++..++..+.. .++|+|.|+.+++.|+..++. .++...+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--------~~~~n~I 120 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--------DGFSNEI 120 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--------cCCCcce
Confidence 34456665554433344444 9999999999999999886554 499999999999999887763 4556679
Q ss_pred EEEECcCcccccccccCCCCCeeEEEeccccccc---C-CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W-STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~-~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.|.+.|+.+..+ ..+.||+|+--.++--+ . .....+...+..+.+.|+|||+|+++.-|.
T Consensus 121 ~f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 121 RFQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eEEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 999999988655 45677777665433221 0 011233567888999999999999987654
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=6e-13 Score=132.35 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=86.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--ccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~ 158 (372)
...++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.+++... ...++.++++|+.. +++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~~~-- 99 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDLNI-- 99 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEecccccccCC--
Confidence 3446789999999999999998765 4589999999999998765432 13468899999864 344
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++++||+|+|.++++|+ +.++...+++++.++|||||++++.
T Consensus 100 ---~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 100 ---SDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ---CCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56799999999999998 4456789999999999999999875
No 73
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=113.45 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCC-C--CEEEEecCCccccHHHHHHcCCC---EEEEEeCChHHHHHHHHHhcCCCcccccccCCCc
Q 017369 69 LNNWIKSVLVQLYARR-G--DVVLDLACGKGGDLIKWDKAKIG---YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~-~--~~VLDlGcG~G~~~~~l~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 142 (372)
-++|+..-...+.... . .+|||+|||.|.....+++.... .++++|.|+.+++..+++.... ..
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----------e~ 122 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----------ES 122 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----------hh
Confidence 4567666555554332 2 27999999999999998875333 6999999999999988865421 23
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCC
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGL 222 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~ 222 (372)
++...+.|+....+.... ..+++|+|++.|+|.-+ .++....++.+++++|||||.+++.-.....+. .
T Consensus 123 ~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-q------- 191 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-Q------- 191 (264)
T ss_pred hhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-H-------
Confidence 456666677654433222 56899999999999876 668899999999999999999988754332211 1
Q ss_pred ccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEe
Q 017369 223 AIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFV 286 (372)
Q Consensus 223 ~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~ 286 (372)
++|..+ --....|+.+.. +.+-|+++.+++.+++.++||..++.
T Consensus 192 --------lRF~~~-----------~~i~~nfYVRgD-GT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 192 --------LRFKKG-----------QCISENFYVRGD-GTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred --------HhccCC-----------ceeecceEEccC-CceeeeccHHHHHHHHHhcccchhcc
Confidence 111110 001122333322 23447899999999999999977654
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=1.8e-12 Score=111.86 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++.... ..++.++++|+.+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc-------
Confidence 4567999999999999998887655 8999999999999999987631 225788899986532
Q ss_pred CCCeeEEEecccccccCCC-----------------HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~-----------------~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|+++..+++.-.. ..-...+++++.++|+|||.+++..
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 3589999998776544111 1125678999999999999987765
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.46 E-value=2.9e-13 Score=108.24 Aligned_cols=113 Identities=26% Similarity=0.369 Sum_probs=86.4
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
|.+|||+|||+|.++..+++....+++|+|+++..++.|+.++.. .++..+++++++|+.+.. ... +++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~--------~~~~~~~~~~~~D~~~~~--~~~-~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR--------NGLDDRVEVIVGDARDLP--EPL-PDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH--------CTTTTTEEEEESHHHHHH--HTC-TTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH--------ccCCceEEEEECchhhch--hhc-cCc
Confidence 468999999999999998887756899999999999999998874 334567999999998765 011 568
Q ss_pred CeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 165 PFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+||+|+++--........ .....+++.+.++|+|||.+++.+|+
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999987554321111 13578899999999999999988763
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=2.4e-12 Score=111.91 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=82.2
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... .++ .+++++++|+.. .+
T Consensus 25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--------~~~-~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--------FGC-GNIDIIPGEAPI-EL 94 (187)
T ss_pred HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CCeEEEecCchh-hc
Confidence 34455688999999999999998887753 45899999999999999988753 122 358888888742 22
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.....+ ...+++.+.+.|+|||++++..
T Consensus 95 ------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 95 ------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEE
Confidence 357999998765543 3568899999999999998764
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=1.3e-12 Score=111.77 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=84.0
Q ss_pred CCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|..+..++..... +|+++|+++.+++.|++++.. .++.. ++++..|+.+.. +
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--------n~~~~-v~~~~~d~~~~~------~ 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--------NGLEN-VEVVQSDLFEAL------P 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--------TTCTT-EEEEESSTTTTC------C
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--------cCccc-cccccccccccc------c
Confidence 7789999999999999988876554 699999999999999998874 23333 899999987532 4
Q ss_pred CCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+++||+|+++--++.... ...-...+++.+.+.|+|||.+++...
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 589999999977654311 113468899999999999999876553
No 78
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=8.8e-13 Score=115.30 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+|||||||+|.++..++... ...|+|+|+++.+++.|+++... .++ .++.++++|+.+++. ...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--------~~l-~ni~~i~~d~~~~~~--~~~ 83 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--------LGL-KNLHVLCGDANELLD--KFF 83 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------hCC-CCEEEEccCHHHHHH--hhC
Confidence 456799999999999999888754 45799999999999999988763 223 279999999976431 111
Q ss_pred CCCCeeEEEecccccccCCC----HHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+++.+|.|++++...|.-.. .-....++++++++|||||.|++.+.+....
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~ 138 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF 138 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 45689999988765542000 0001478999999999999999988776543
No 79
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.42 E-value=4e-12 Score=120.50 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=108.5
Q ss_pred hhHHHHHHHHhhccccccch-hhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEE
Q 017369 36 TKVFARKVADHYSRRTNQTL-EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGI 113 (372)
Q Consensus 36 ~~~~~~~va~~Y~~~~~~~~-~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gv 113 (372)
....|+..+++|........ .......... ..+..-...++.......+..+||||||+|.++..++... ...++|+
T Consensus 74 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI 152 (390)
T PRK14121 74 LKKALKIFSELFCADIISHNLAENSKKLSLK-KPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI 152 (390)
T ss_pred HHHHHHHHHHHhhcccccccccccccccccc-ccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE
Confidence 34688899999963222211 1111111100 0010111223344445567799999999999999998764 3479999
Q ss_pred eCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH----HHHHH
Q 017369 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRAL 189 (372)
Q Consensus 114 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l 189 (372)
|+++.+++.|.+++.. .++ .++.++++|+..+. ..+ +++++|.|++.+...|. ...+ ...++
T Consensus 153 EI~~~~i~~a~~ka~~--------~gL-~NV~~i~~DA~~ll--~~~-~~~s~D~I~lnFPdPW~--KkrHRRlv~~~fL 218 (390)
T PRK14121 153 EIHTPSIEQVLKQIEL--------LNL-KNLLIINYDARLLL--ELL-PSNSVEKIFVHFPVPWD--KKPHRRVISEDFL 218 (390)
T ss_pred ECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHhh--hhC-CCCceeEEEEeCCCCcc--ccchhhccHHHHH
Confidence 9999999999988764 222 36999999986542 111 67899999988766542 1111 25799
Q ss_pred HHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 190 ANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 190 ~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
+.++++|+|||.+.+.+-+.+.....
T Consensus 219 ~e~~RvLkpGG~l~l~TD~~~y~~~~ 244 (390)
T PRK14121 219 NEALRVLKPGGTLELRTDSELYFEFS 244 (390)
T ss_pred HHHHHHcCCCcEEEEEEECHHHHHHH
Confidence 99999999999999988776654433
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=2.8e-12 Score=113.67 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.+.++.+|||+|||+|..+..++.. ..++|+++|+++++++.|++++... + ..++.++++|
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--------g-~~~v~~~~gd 135 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--------G-YDNVEVIVGD 135 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------C-CCCeEEEECC
Confidence 334555556788999999999999988777664 2358999999999999999988642 1 2368999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..... +.++||+|++..+...+ ...+.+.|||||.+++..
T Consensus 136 ~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 136 GTLGYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccCCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEE
Confidence 876443 45789999998776543 245677899999998865
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.42 E-value=6.4e-12 Score=110.26 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=88.8
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..+.+.++.+|||+|||+|.++..++.. ..++|+++|+++.+++.|+++... .++..++.++++|+.+..
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~--------~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK--------FGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCCeEEEEechhhhH
Confidence 4456678999999999999998887653 345899999999999999988763 232346888999886532
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
.. ..+.||+|++.... .....+++.+.++|+|||++++..+..+.+
T Consensus 106 ~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 106 FT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred hh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 10 23689999985432 346689999999999999999877766443
No 82
>PTZ00146 fibrillarin; Provisional
Probab=99.42 E-value=1.7e-12 Score=118.30 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=79.4
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~- 155 (372)
.+.+.++.+|||+|||+|.++..++..- .+.|+++|+|+.|++........ ..++.++.+|+....
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK 195 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence 3457899999999999999999988752 46899999999766554444321 136888999986421
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+. . ..+.||+|++..+. .++...++.++.+.|||||.|++.+
T Consensus 196 y~-~--~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 196 YR-M--LVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred hh-c--ccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEE
Confidence 11 0 23579999988752 2456677789999999999999864
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.41 E-value=3.3e-12 Score=113.56 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++... ++ .+++++++|
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------g~-~~v~~~~~d 136 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------GL-DNVIVIVGD 136 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--------CC-CCeEEEECC
Confidence 3445555567889999999999999998877653 346999999999999999998742 22 368999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.+... ...+||+|++..+..++ ...+.+.|+|||++++.+.
T Consensus 137 ~~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 137 GTQGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEc
Confidence 876432 34689999988766543 3457889999999988653
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.40 E-value=4.6e-12 Score=117.57 Aligned_cols=106 Identities=21% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... +++...+.+..++.. ..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~--------n~~~~~~~~~~~~~~--~~----- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--------NQVSDRLQVKLIYLE--QP----- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecccc--cc-----
Confidence 457899999999999988888776667899999999999999998763 333445666666532 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|+++... .....++.++.++|||||+++++....
T Consensus 222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 34689999997643 345678999999999999999876543
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=8.2e-12 Score=113.59 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|..+..+...+...|+|+|+|+.+++.|+++... .++...+.+..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~--------~~~~~~~~~~~------------- 175 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL--------NGVELNVYLPQ------------- 175 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCceEEEcc-------------
Confidence 457899999999999888877766666799999999999999998763 12211122111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.+||+|+++... .....++.++.++|||||+++++.
T Consensus 176 ~~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 176 GDLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CCCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12279999987543 335678999999999999999874
No 86
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.40 E-value=4.9e-12 Score=108.14 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCC--CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
..+.+..+.++. ..-|||||||+|.....+...+ ...+|+|||+.|++.|.++-- .-.++.+|
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~--------------egdlil~D 101 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL--------------EGDLILCD 101 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh--------------hcCeeeee
Confidence 444555555555 6789999999997766665444 468999999999999997432 13467778
Q ss_pred Ccc-cccccccCCCCCeeEEEecccccccCC-------CHHHHHHHHHHHHHhcCCCcEEEEEe-CChHHHHHHH
Q 017369 151 CYE-VHLDKVLADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTM-PDANVIIKKL 216 (372)
Q Consensus 151 ~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~~~~~~l 216 (372)
+.+ +|+ .+++||-|++..+++|++. +...+..|+..++.+|++|+..++.. |..+.-++.+
T Consensus 102 MG~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 102 MGEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred cCCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 753 666 7899999999998888743 33456778999999999999999887 4444444443
No 87
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=5.2e-13 Score=114.55 Aligned_cols=232 Identities=16% Similarity=0.256 Sum_probs=154.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....++|||||-|.....+...+..+++-+|.|-.|++.++..-.. ...+...++|-+.+++ .+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp-----------~i~~~~~v~DEE~Ldf-----~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP-----------SIETSYFVGDEEFLDF-----KE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC-----------ceEEEEEecchhcccc-----cc
Confidence 4568999999999999999888888999999999999998764321 2346678889888888 78
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH---hhhcCCccCCeEEEEEeCchhhhc
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL---REVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l---~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
+++|+|+++.++||. .++...+..+...|||+|.|+.++...+.+.+.- +-+.-...|...
T Consensus 136 ns~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiS------------ 199 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGIS------------ 199 (325)
T ss_pred cchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCC------------
Confidence 999999999999998 7788999999999999999998887766543321 111000111000
Q ss_pred ccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChhhHHHH---HHhccCCCCCC
Q 017369 241 KFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPEYIELM---RRLGALGDGNQ 317 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 317 (372)
|.-.| +.....+-.|+..+||..+... -.++.-. .|...+|+ +-||..++.+.
T Consensus 200 --phiSP------------------f~qvrDiG~LL~rAGF~m~tvD-tDEi~v~---Yp~mfeLm~dLq~MgEsn~~~~ 255 (325)
T KOG2940|consen 200 --PHISP------------------FTQVRDIGNLLTRAGFSMLTVD-TDEIVVG---YPRMFELMEDLQGMGESNAALN 255 (325)
T ss_pred --CCcCh------------------hhhhhhhhhHHhhcCcccceec-ccceeec---CchHHHHHHHHHhhcccchhhc
Confidence 10001 3334556788999999877654 2333222 24444554 44555444444
Q ss_pred CCCCCCHhHHH-HHHhhcEEE----------EE---ecCCCCCCccCCCCCCCceeecccceeecccC
Q 017369 318 DQSTLSADEWE-VAYLYLAFV----------LR---KRGQPDGTRVSGKRDKGKMYISKEDIMYVHSD 371 (372)
Q Consensus 318 ~~~~ls~~e~e-~~~ly~~~v----------f~---K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (372)
....|+.+-.- +.++|.-.. || -.+-...++.+...-+|+..+|..|+=+|.++
T Consensus 256 Rn~~l~Ret~vAaaAiY~smya~e~~~iPATfqiiy~iGWk~~~s~pq~~~RGs~tVS~~dlgki~~~ 323 (325)
T KOG2940|consen 256 RNAILNRETMVAAAAIYQSMYATEDGTIPATFQIIYMIGWKPHPSQPQAAERGSATVSFKDLGKIFEG 323 (325)
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCCCcceeEEEEEEEccCcCCCCCChhhcCCceEeHHHHHHhhcC
Confidence 44556655433 333332211 11 12333457888889999999999999887664
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.39 E-value=1e-11 Score=118.25 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+....+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++...+. ....+++++..|+....
T Consensus 222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~------~~~~~v~~~~~D~l~~~- 294 (378)
T PRK15001 222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP------EALDRCEFMINNALSGV- 294 (378)
T ss_pred HhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc------ccCceEEEEEccccccC-
Confidence 33333345699999999999999887754 45899999999999999998763210 00136888888885421
Q ss_pred ccccCCCCCeeEEEecccccccC-CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+..+||+|+|+-.+|... .+.....++++.+.++|+|||.+++...
T Consensus 295 -----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 -----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 346899999987766431 1334567899999999999999888753
No 89
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.39 E-value=1.8e-11 Score=106.03 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=100.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
...+.||.|+|-|+.+..++.....+|..+|+.+..++.|++.... .......+++..+.+... +.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---------~~~~v~~~~~~gLQ~f~P-----~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---------DNPRVGEFYCVGLQDFTP-----EE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---------GGCCEEEEEES-GGG---------T
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---------cCCCcceEEecCHhhccC-----CC
Confidence 3578999999999999988777777899999999999999987652 112235677777765442 35
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~ 243 (372)
++||+|++++++.|+ +.+++..+|+++...|+|+|.+++-..... .+ . ..|+.+
T Consensus 121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~-------------~~--~--~~~D~~------- 174 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSS-------------SG--F--DEFDEE------- 174 (218)
T ss_dssp T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEES-------------SS--E--EEEETT-------
T ss_pred CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCC-------------CC--C--cccCCc-------
Confidence 799999999999999 889999999999999999999887531110 00 0 011111
Q ss_pred CCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 244 SSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 244 ~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
..++ -.+.+.++++++++|+++|...
T Consensus 175 -------------DsSv-----TRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 175 -------------DSSV-----TRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp -------------TTEE-----EEEHHHHHHHHHHCT-EEEEEE
T ss_pred -------------cCee-----ecCHHHHHHHHHHcCCEEEEec
Confidence 0122 5567889999999999999865
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=1.1e-11 Score=110.86 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=89.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
.+......++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++.... ..++.++++|+.+.
T Consensus 28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~~~- 96 (223)
T PRK14967 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWARA- 96 (223)
T ss_pred HHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchhhh-
Confidence 3444445678899999999999988887765558999999999999999887531 22578888888652
Q ss_pred cccccCCCCCeeEEEecccccccC-----------------CCHHHHHHHHHHHHHhcCCCcEEEEEeCC---hHHHHHH
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMPD---ANVIIKK 215 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~-----------------~~~~~~~~~l~~i~~~LkpgG~li~~~~~---~~~~~~~ 215 (372)
+ ++++||+|+++....... +.......+++++.++|||||.+++.... ...++..
T Consensus 97 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~ 171 (223)
T PRK14967 97 V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR 171 (223)
T ss_pred c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence 2 457899999974322110 01123567889999999999998875443 3444444
Q ss_pred Hh
Q 017369 216 LR 217 (372)
Q Consensus 216 l~ 217 (372)
++
T Consensus 172 l~ 173 (223)
T PRK14967 172 LS 173 (223)
T ss_pred HH
Confidence 43
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=2.1e-11 Score=105.88 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.++++.... ++.. .+.++++|+.+. +
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~~-~----- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEVIRSDLFEP-F----- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEEEecccccc-c-----
Confidence 57789999999999999988876 568999999999999998887531 1121 278888887653 2
Q ss_pred CCCCeeEEEecccccc-----------------cCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHY-----------------SWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....||+|+++..+.. ..........+++++.++|||||.+++.++
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3458999998654321 011123457789999999999999887654
No 92
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=1.1e-11 Score=109.61 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=98.1
Q ss_pred hhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccc---cccCCCcC
Q 017369 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ---RRKKFSFP 143 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~---~~~~~~~~ 143 (372)
...+.++...+......++.+||+.|||.|.++..++..+. .|+|+|+|+.+++.+.+.....-.... ....-...
T Consensus 26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 44455565555555556778999999999999999987766 699999999999998764321000000 00001346
Q ss_pred eEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++.++|+.+++.... ..+.||+|+-..+++.+ +.+...+..+.+.++|+|||.+++.+
T Consensus 105 i~~~~gD~f~l~~~~~--~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 105 IEIYVADIFNLPKIAN--NLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eEEEEccCcCCCcccc--ccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 8999999998753100 23689999999999988 66788999999999999999977554
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.37 E-value=1e-11 Score=109.61 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
++++.+|||+|||+|.++..+++.. .+.|+|+|+++ | .. ..++.++++|+.+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-----------~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-----------IVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-----------CCCcEEEecCCCChHHHHH
Confidence 5788999999999999998887753 35899999988 2 10 12488999999875310
Q ss_pred --cccCCCCCeeEEEecccccccCCCHHH-------HHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 158 --KVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
... ..++||+|++..+.++.-....+ ...+|+++.++|||||.|++.+...+.
T Consensus 109 i~~~~-~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 109 LLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHHHh-CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 001 45789999998877653111011 256899999999999999997765443
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.37 E-value=6.3e-12 Score=118.93 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=94.2
Q ss_pred HHHHHHHHH-HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~-~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.-+...+.. ...+++.+|||+|||+|.++...+.. ...++|+|+++.|++.|+.++... ++. ++.+.++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~--------g~~-~i~~~~~ 237 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHY--------GIE-DFFVKRG 237 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHh--------CCC-CCeEEec
Confidence 333333333 35678899999999999998887654 458999999999999999987642 223 3788999
Q ss_pred cCcccccccccCCCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
|+.++++ .+++||+|+++.-..- ......-...+++++.++|+|||++++.+|+...+..
T Consensus 238 D~~~l~~-----~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~ 302 (329)
T TIGR01177 238 DATKLPL-----SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES 302 (329)
T ss_pred chhcCCc-----ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH
Confidence 9998876 5679999999632110 0001133578999999999999999988887644443
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.35 E-value=2.9e-11 Score=111.81 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++... .++..++.++++|+.+. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~--------~~~~~~i~~~~~D~~~~-~----- 185 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIQSDLFAA-L----- 185 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhhc-c-----
Confidence 345799999999999999988753 45899999999999999998864 33345789999998642 2
Q ss_pred CCCCeeEEEeccc------cccc-----CC----------CHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 162 DDAPFDICSCQFA------MHYS-----WS----------TEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 162 ~~~~fD~V~~~~~------l~~~-----~~----------~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+.++||+|+++-- +.++ .+ .......++..+.+.|+|||++++.+....
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 3458999999621 1100 00 112347789999999999999999887543
No 96
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1.9e-11 Score=115.55 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||+|||+|.++..++... ..+|+++|+|+.|++.|++++.. +++ ...++.+|+...
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~--------n~l--~~~~~~~D~~~~------- 257 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA--------NGL--EGEVFASNVFSD------- 257 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCC--CCEEEEcccccc-------
Confidence 345689999999999998888764 35799999999999999998764 222 346677777541
Q ss_pred CCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|+|+..+|+... +......+++++.+.|||||.+++....
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2468999999998886432 2456789999999999999999876643
No 97
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.34 E-value=2.2e-12 Score=109.17 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=66.8
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHH
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~ 190 (372)
+|+|+|++|++.|+++..... .+...+++++++|+.++++ ++++||+|++.+++|++ .+...+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA------RSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc------ccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence 489999999999987764210 1112468999999999887 67899999999999987 56889999
Q ss_pred HHHHhcCCCcEEEEEe
Q 017369 191 NVSALLRPGGTFIGTM 206 (372)
Q Consensus 191 ~i~~~LkpgG~li~~~ 206 (372)
+++++|||||.+++..
T Consensus 66 ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 66 EMYRVLKPGSRVSILD 81 (160)
T ss_pred HHHHHcCcCeEEEEEE
Confidence 9999999999987654
No 98
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.34 E-value=2.3e-12 Score=111.91 Aligned_cols=129 Identities=15% Similarity=0.260 Sum_probs=85.9
Q ss_pred HHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCC-EEEEecCCccccHHHHHHcCCCEEEEEeCCh
Q 017369 39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (372)
Q Consensus 39 ~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~ 117 (372)
.++.-+++|........ ..|.+.+... .++. .++|+|||+|..+.-++. ...+|+|+|+|+
T Consensus 4 ~~~~~a~~Y~~ARP~YP--------------tdw~~~ia~~---~~~h~~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~ 65 (261)
T KOG3010|consen 4 LFDKQAADYLNARPSYP--------------TDWFKKIASR---TEGHRLAWDVGTGNGQAARGIAE-HYKEVIATDVSE 65 (261)
T ss_pred cccccHHHHhhcCCCCc--------------HHHHHHHHhh---CCCcceEEEeccCCCcchHHHHH-hhhhheeecCCH
Confidence 45667788875433321 3565555432 2232 899999999966665554 466899999999
Q ss_pred HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC
Q 017369 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR 197 (372)
Q Consensus 118 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk 197 (372)
.||+.|++..... -......+...++.++. ..+++.|+|+|..++||+ +...+++++.++||
T Consensus 66 ~mL~~a~k~~~~~--------y~~t~~~ms~~~~v~L~-----g~e~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLR 127 (261)
T KOG3010|consen 66 AMLKVAKKHPPVT--------YCHTPSTMSSDEMVDLL-----GGEESVDLITAAQAVHWF-----DLERFYKEAYRVLR 127 (261)
T ss_pred HHHHHhhcCCCcc--------cccCCcccccccccccc-----CCCcceeeehhhhhHHhh-----chHHHHHHHHHHcC
Confidence 9999998765420 00111222222332222 147899999999999997 68899999999998
Q ss_pred CCc-EEE
Q 017369 198 PGG-TFI 203 (372)
Q Consensus 198 pgG-~li 203 (372)
+.| .+.
T Consensus 128 k~Gg~ia 134 (261)
T KOG3010|consen 128 KDGGLIA 134 (261)
T ss_pred CCCCEEE
Confidence 876 544
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=4.8e-11 Score=108.59 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=81.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+|||+|..+..++.. +...++|+|+++.+++.|+++... .++ .++.++++|+.+ ++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~~~-~~~~~~~~d~~~-~~----- 150 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--------LGL-DNVTFLQSDWFE-PL----- 150 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-CeEEEEECchhc-cC-----
Confidence 34569999999999999988875 345899999999999999998763 222 258999999875 33
Q ss_pred CCCCeeEEEeccccc------ccCC----------------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMH------YSWS----------------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~------~~~~----------------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++||+|+++.... .+.. .......+++++.++|+|||.+++..
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 457899999964322 1100 01123578899999999999998765
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.4e-11 Score=112.43 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=79.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+|||+|||+|.+++..++.+...++|+|++|.+++.|+.+... +++...+.....+....+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~--------N~v~~~~~~~~~~~~~~~------ 225 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL--------NGVELLVQAKGFLLLEVP------ 225 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH--------cCCchhhhcccccchhhc------
Confidence 458899999999999999999888998999999999999999998874 233321222233332222
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|+++-.. +-...+...+.+.|||||+++++-
T Consensus 226 ~~~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 226 ENGPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccCcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 34699999998632 336688899999999999999886
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.30 E-value=4.3e-11 Score=106.19 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
++..+...++.+|||+|||+|..+..++... .+++++|+++.+++.|++++... ++ .++.+.++|+.+..
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~--------~~-~~v~~~~~d~~~~~ 139 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL--------GL-HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC--------CC-CceEEEECCcccCC
Confidence 3344556788999999999999887665543 58999999999999999988642 22 25889999985432
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..++||+|++..+++++ ...+.+.|+|||.+++.+.
T Consensus 140 ~-----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence 1 34789999998776543 3457889999999998775
No 102
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.30 E-value=4.1e-11 Score=106.12 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=94.2
Q ss_pred chhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC-CCcccc--cccCCCc
Q 017369 66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG-DADHHQ--RRKKFSF 142 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~--~~~~~~~ 142 (372)
....+.++...+..+...++.+||..|||.|.++..++..+. +|+|+|+|+.+++.|.+.... ...... ....-..
T Consensus 19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 445566677777776777888999999999999999887654 899999999999998654321 000000 0001123
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++++.++|+.+++.. ..++||+|+-..+++-+ +++...+..+.+.++|+|||.++
T Consensus 98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEE
T ss_pred ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEE
Confidence 689999999987642 22589999998888776 55778899999999999999944
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=8.7e-11 Score=109.68 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=83.4
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++.. .++..++.++++|+.+. + +.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~--------~~l~~~i~~~~~D~~~~-l-----~~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIESDLFAA-L-----PGR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCCcEEEEECchhhh-C-----CCC
Confidence 689999999999999887753 45899999999999999999864 23345699999998642 2 346
Q ss_pred CeeEEEeccc------c-------ccc-----C---CCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFA------M-------HYS-----W---STEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~------l-------~~~-----~---~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
+||+|+++-- + +|- + +.......+++++.+.|+|||.+++.+....
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 8999999621 1 110 0 0113357889999999999999999886543
No 104
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.28 E-value=5.4e-11 Score=91.62 Aligned_cols=103 Identities=26% Similarity=0.377 Sum_probs=82.4
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+|||.|..+..++.....+++++|+++.+++.+++.... ....++.++..|+.+... ...++|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~ 67 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---------LLADNVEVLKGDAEELPP----EADESF 67 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc---------ccccceEEEEcChhhhcc----ccCCce
Confidence 4899999999998888765566899999999999998853321 123468889999876542 034789
Q ss_pred eEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
|+|++...+++. ......+++.+.+.|+|||.++++
T Consensus 68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999998873 367889999999999999999876
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=1.2e-10 Score=102.05 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=83.6
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+...++.+|||+|||+|.++..++.. +.++|+|+|+|+.+++.|++++... +. .+++++.+|+.+. +
T Consensus 34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~--------~~-~~v~~~~~d~~~~-~ 103 (196)
T PRK07402 34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF--------GV-KNVEVIEGSAPEC-L 103 (196)
T ss_pred HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CC-CCeEEEECchHHH-H
Confidence 3345567899999999999998888754 3468999999999999999987631 22 3688999998542 1
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
.. ....+|.+++... .....+++++.++|+|||++++..++.+.+
T Consensus 104 ~~---~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 104 AQ---LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred hh---CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 10 1234566654221 235689999999999999999998877544
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.28 E-value=2.1e-11 Score=112.28 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=77.7
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
...++.+|||+|||+|.+++..++.+..+|+|+|+++.+++.|+++... +++..++.+. ... ..
T Consensus 158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~--------N~~~~~~~v~--~~~--~~---- 221 (295)
T PF06325_consen 158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL--------NGVEDRIEVS--LSE--DL---- 221 (295)
T ss_dssp HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH--------TT-TTCEEES--CTS--CT----
T ss_pred hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH--------cCCCeeEEEE--Eec--cc----
Confidence 4567899999999999999988888888999999999999999999874 4445555442 111 11
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|+++-.. .-+..++..+.++|+|||+++++-
T Consensus 222 -~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 222 -VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp -CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred -ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 34899999987554 345678888999999999999875
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.28 E-value=8.4e-11 Score=108.99 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=83.4
Q ss_pred CEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++... .++..++.++++|+.+ ++ +..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~--------~~~~~~v~~~~~d~~~-~~-----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK--------NQLEHRVEFIQSNLFE-PL-----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhc-cC-----cCC
Confidence 699999999999999888754 35899999999999999998763 2333458999999865 22 334
Q ss_pred CeeEEEecc-------------ccccc--------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 165 ~fD~V~~~~-------------~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+||+|+++- +..|- .+.......++..+.+.|+|||++++.+...
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 899999962 11111 0012356789999999999999999988754
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.27 E-value=1.2e-10 Score=100.35 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=82.5
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
+|.......+.+|||||||||.++..++...+. ...-.|+++..+...+......+. .++. .-+..|+...
T Consensus 17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~-----~Nv~---~P~~lDv~~~ 88 (204)
T PF06080_consen 17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL-----PNVR---PPLALDVSAP 88 (204)
T ss_pred HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC-----cccC---CCeEeecCCC
Confidence 444443334446999999999999999886442 466889988876555554432111 1112 2234555544
Q ss_pred ccccc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLDKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.... ....++||.|+|.+++|.+ +......+++.+.++|++||.|++--|
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22111 0024689999999999976 888999999999999999999987654
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=1.8e-10 Score=110.05 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++.... ..++.++++|+.+..+.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----------g~rV~fi~gDl~e~~l~---- 315 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----------GARVEFAHGSWFDTDMP---- 315 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCcEEEEEcchhccccc----
Confidence 45679999999999999888764 4568999999999999999988631 23689999998654321
Q ss_pred CCCCeeEEEeccccc-----cc----------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMH-----YS----------------WSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~-----~~----------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|+|+--.. .. -+...-.+.+++.+.+.|+|||.+++.+..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 235799999965210 00 011122457788888999999998877643
No 110
>PRK04457 spermidine synthase; Provisional
Probab=99.24 E-value=1.6e-10 Score=105.55 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=83.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||||||+|..+..+... +..+++++|+++++++.|++.+.. .....+++++++|+.+.--.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~--- 132 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV--- 132 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh---
Confidence 345679999999999988887765 445799999999999999998752 22245799999998653211
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..++||+|++...-.......-....+++++.++|+|||++++...+.
T Consensus 133 -~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 133 -HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred -CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 236899999863111100000113689999999999999999876433
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=4.3e-10 Score=95.08 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=95.4
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+..+.+.++.+++|+|||+|..+.+|+.. +.++|+++|-++++++..+++..+. + ..++.++.+|+-+.
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--------g-~~n~~vv~g~Ap~~ 96 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--------G-VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------C-CCcEEEEeccchHh
Confidence 445667889999999999999999999854 4568999999999999999988753 2 45899999998653
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
-- ...++|.|+...+- ....+|+.+...|||||++++.....+.....+.
T Consensus 97 L~-----~~~~~daiFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 97 LP-----DLPSPDAIFIGGGG--------NIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred hc-----CCCCCCEEEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 21 22379999988873 2568999999999999999998876665544443
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.21 E-value=1.4e-10 Score=104.70 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+|||+|||+|.++..++... ..+|+|+|+++.|++.|+++.. ++.++++|+.+..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~------ 122 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFE------ 122 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhc------
Confidence 345799999999999888776643 4589999999999999988653 4788999998654
Q ss_pred CCCCeeEEEecccccccCCCHHH------------------HHHHHHHHHHhcCCCcEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEAR------------------ARRALANVSALLRPGGTFI 203 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~------------------~~~~l~~i~~~LkpgG~li 203 (372)
...+||+|+++-.+++. ...+ ...++..+...|+|+|.++
T Consensus 123 ~~~kFDlIIsNPPF~~l--~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 123 SNEKFDVVISNPPFGKI--NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ccCCCcEEEEcCCcccc--CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 24689999998877764 1121 2355566667777777544
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=1.3e-10 Score=101.04 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=78.5
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD- 157 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~- 157 (372)
.+.++.+|||+|||+|.++..++.. ..++|+|+|+|+.+ . ..++.++++|+.+....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~------------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P------------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c------------CCCceEEEeeCCChhHHH
Confidence 4578899999999999998887764 34579999999854 1 12477888888654310
Q ss_pred ---cccCCCCCeeEEEeccccc----ccC---CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh---HHHHHHHh
Q 017369 158 ---KVLADDAPFDICSCQFAMH----YSW---STEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLR 217 (372)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l~----~~~---~~~~~~~~~l~~i~~~LkpgG~li~~~~~~---~~~~~~l~ 217 (372)
... +.++||+|++..+.+ +.. ........++.++.++|+|||++++.+... ..++..++
T Consensus 89 ~l~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 89 KIRERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred HHHHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 011 456899999865422 110 011235789999999999999999866543 34444443
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=8.4e-11 Score=103.31 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
...++..+.++++.+|||||||+|..+.-++.. ..+.|+++|+.+..++.|++++...+ ..++.++++|
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---------~~nv~~~~gd 131 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---------IDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---------THSEEEEES-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---------cCceeEEEcc
Confidence 455666777899999999999999988777663 34579999999999999999987421 2379999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.....- ...+||.|++..+...+ -..+.+.|++||++++-+.
T Consensus 132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence 865332 45789999999887543 2457788999999998764
No 115
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=3.5e-10 Score=104.39 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=83.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+|||+|||+|..+..++... ...++|+|+|+.+++.|+++.. .....++.++++|+.+. +
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---------~~~~~~i~~~~~d~~~~-~--- 171 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---------HGLGARVEFLQGDWFEP-L--- 171 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---------hCCCCcEEEEEccccCc-C---
Confidence 34567899999999999999887754 4689999999999999999875 11234689999998542 2
Q ss_pred cCCCCCeeEEEeccccc------cc----------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMH------YS----------------WSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~------~~----------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+.++||+|+++.... .+ .........+++++.++|+|||++++.+.
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 247899999863211 00 01123457889999999999999998763
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=1.6e-10 Score=98.76 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.++......++.+|||+|||+|.++..++.. ..+++|+|+++.+++.+++++.. ..+++++++|+.+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcC
Confidence 3445555677889999999999999999876 56899999999999999988752 23689999999887
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
++ ++..||.|+++.-.+. +.+....+++.. .+.++|.+++..-..+
T Consensus 72 ~~-----~~~~~d~vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~ 117 (169)
T smart00650 72 DL-----PKLQPYKVVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVAR 117 (169)
T ss_pred Cc-----cccCCCEEEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhH
Confidence 76 4457999998765542 223333333321 2457888877653333
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=106.66 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=80.9
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
++..+.++++.+|||+|||+|..+..+++.. .+.|+|+|+++++++.|++++... +. .++.++++|+..
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------g~-~nV~~i~gD~~~ 142 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------GI-ENVIFVCGDGYY 142 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------CC-CcEEEEeCChhh
Confidence 4444456788999999999999988887643 247999999999999999987642 22 368899999865
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ...+||+|++..++... ...+.+.|+|||.+++..
T Consensus 143 ~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence 443 34679999988666432 234678999999988765
No 118
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=1.9e-10 Score=106.31 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+...+||+||||+|..+..+++. +..+|+++|+++.+++.|++.+...... ..-..+++++.+|+...-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~----~~~d~rv~v~~~Da~~~l~~---- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG----AYDDPRVELVIGDGIKFVAE---- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc----cccCCceEEEECchHHHHhh----
Confidence 45679999999999999998876 4568999999999999999987531100 00145799999998763211
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++...-.+.....--...+++.+.+.|+|||.+++...
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 3578999999764443211111136789999999999999988654
No 119
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=102.97 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.....+|||+|||+|..++.++.+ ...+++|||+.+.|.+.|++..+. +++..+++++++|+.+.....
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--------n~l~~ri~v~~~Di~~~~~~~-- 111 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--------NPLEERIQVIEADIKEFLKAL-- 111 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--------CcchhceeEehhhHHHhhhcc--
Confidence 345789999999999998888776 447899999999999999999874 567789999999998755321
Q ss_pred CCCCCeeEEEeccccccc--------------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh--HHHHHHHhh
Q 017369 161 ADDAPFDICSCQFAMHYS--------------WSTEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLRE 218 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~--~~~~~~l~~ 218 (372)
...+||+|+|+--.+-. ++...+.+.+++.+.++|||||.+.+..+.. ..+++.++.
T Consensus 112 -~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~ 184 (248)
T COG4123 112 -VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS 184 (248)
T ss_pred -cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHh
Confidence 23579999997422110 0112346889999999999999998877643 344555544
No 120
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.1e-10 Score=98.01 Aligned_cols=110 Identities=22% Similarity=0.288 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+.+.++.+|||||||+|..+.-+++. .++|+.+|..+...+.|++++...+ + .++.+.++|..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg--------~-~nV~v~~gDG~ 130 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLG--------Y-ENVTVRHGDGS 130 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcC--------C-CceEEEECCcc
Confidence 455667778899999999999999888777654 3499999999999999999987532 2 25999999986
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.-.- +..+||.|++..+...+ -+.+.+.||+||++++-+.
T Consensus 131 ~G~~-----~~aPyD~I~Vtaaa~~v----------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 131 KGWP-----EEAPYDRIIVTAAAPEV----------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCC-----CCCCcCEEEEeeccCCC----------CHHHHHhcccCCEEEEEEc
Confidence 5322 55899999998877644 2456788999999987764
No 121
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.14 E-value=2.5e-10 Score=97.96 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++...|-|+|||.+.++..+. ..-.|..+|+-.. +-.++.+|+..+|+ +
T Consensus 71 ~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~------------------------n~~Vtacdia~vPL-----~ 119 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP------------------------NPRVTACDIANVPL-----E 119 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------------------STTEEES-TTS-S-------
T ss_pred CCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC------------------------CCCEEEecCccCcC-----C
Confidence 446799999999998775542 2235999998541 12357899999998 7
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++|++++..+|.. .++..++.++.|+|||||.|.+..
T Consensus 120 ~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 120 DESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEE
Confidence 899999999998875 578899999999999999997764
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=5.8e-10 Score=109.19 Aligned_cols=114 Identities=24% Similarity=0.322 Sum_probs=83.8
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+.+.++.+|||+|||+|..+..++.... +.|+|+|+++.+++.+++++... +.++.++++|+.+.+.
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----------g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----------GLKATVIVGDARDPAQ-- 307 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCeEEEEcCcccchh--
Confidence 3456889999999999999988887543 58999999999999999998642 2246889999976431
Q ss_pred ccCCCCCeeEEEeccc------c------cccCCCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFA------M------HYSWSTEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~------l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+...++||.|++... + .|. .+.. ...++|..+.+.|||||+++.++.
T Consensus 308 -~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 308 -WWDGQPFDRILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred -hcccCCCCEEEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 013468999995331 1 111 1122 235789999999999999997763
No 123
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.11 E-value=4.7e-10 Score=102.82 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|..+..++.. ..+.|+++|+++.+++.++++++.. ++ .++.++++|+..++.
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------g~-~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------GV-LNVAVTNFDGRVFGA- 136 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------CC-CcEEEecCCHHHhhh-
Confidence 35578899999999999999887664 2458999999999999999998742 22 358889999876543
Q ss_pred cccCCCCCeeEEEecc------cccccC-----CCHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSW-----STEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~-----~~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+.||.|++.- ++..-. -+.+ ....+|+++.+.|||||+++.++-
T Consensus 137 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 137 ----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred ----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 345699999742 111100 0111 235699999999999999988763
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=7.4e-10 Score=108.69 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=85.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|+.+..++.. +.+.|+++|+++.+++.+++++... ++. ++.++++|+.+.+..
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------g~~-~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------GLK-SIKILAADSRNLLEL 318 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------CCC-eEEEEeCChhhcccc
Confidence 34567899999999999999888764 3468999999999999999988742 222 589999998765410
Q ss_pred cccCCCCCeeEEEec------ccccccCC-----CHHH-------HHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQ------FAMHYSWS-----TEAR-------ARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~------~~l~~~~~-----~~~~-------~~~~l~~i~~~LkpgG~li~~~ 206 (372)
... ..++||.|++. .++++..+ +..+ ..++|.++.+.|||||+++.++
T Consensus 319 ~~~-~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 319 KPQ-WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccc-ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 000 24689999974 23332211 1112 4688999999999999998765
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=7.4e-10 Score=109.05 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=82.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+|||+|||+|..+..++.. ..+.|+|+|+|+.+++.+++++.. .++ .++.++++|+....
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--------~g~-~~v~~~~~Da~~~~--- 314 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA--------LGI-TIIETIEGDARSFS--- 314 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------hCC-CeEEEEeCcccccc---
Confidence 4567899999999999988777653 345899999999999999999874 222 25899999987653
Q ss_pred ccCCCCCeeEEEec----c--cc------cccCCCHH-------HHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 159 VLADDAPFDICSCQ----F--AM------HYSWSTEA-------RARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 159 ~~~~~~~fD~V~~~----~--~l------~~~~~~~~-------~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++++||+|++. . ++ .|.+ +.+ ....+|.++.+.|||||+++.++..
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 34689999963 1 11 1111 112 2357899999999999999987743
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.5e-09 Score=95.88 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=98.2
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.++....+.|+++|||.|.|+|.++..++.. +.++|+.+|+.++..+.|+++++. .++..++.+..+|+.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~--------~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE--------FGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH--------hccccceEEEecccc
Confidence 3555668899999999999999999988853 557999999999999999999984 355666888999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
+.-. ...||.|+.. ..++-.+++.++++|+|||.+++-+|+.+.+.+.+.
T Consensus 157 ~~~~------~~~vDav~LD---------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 157 EGID------EEDVDAVFLD---------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred cccc------ccccCEEEEc---------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 7654 3489999753 245668999999999999999999999877655433
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1e-09 Score=107.34 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=85.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++.+|||+|||+|+.+..++.. +.++|+++|+|+.+++.+++++... ++. ++.++++|+..++..
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------g~~-~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------KLS-SIEIKIADAERLTEY 303 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------CCC-eEEEEECchhhhhhh
Confidence 35678899999999999988887764 3568999999999999999998742 222 588999998765410
Q ss_pred cccCCCCCeeEEEecc---cccccC--------CCH-------HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 158 KVLADDAPFDICSCQF---AMHYSW--------STE-------ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~---~l~~~~--------~~~-------~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||.|++.. ++..+- .+. ....++|.++.+.|||||.++.+|..
T Consensus 304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 246899999742 111110 011 12467799999999999999887743
No 128
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=7.7e-10 Score=110.17 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++... .++..++.++++|+.+. + +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~--------~~l~~~v~~~~~D~~~~-~-----~ 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK--------YEVTDRIQIIHSNWFEN-I-----E 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH--------cCCccceeeeecchhhh-C-----c
Confidence 3468999999999999888764 456899999999999999998763 23345688999997542 2 3
Q ss_pred CCCeeEEEeccc--------------ccc-----cCC---CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFA--------------MHY-----SWS---TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~--------------l~~-----~~~---~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|+++-- ..| ++. .......+++.+.+.|+|||.+++.+.
T Consensus 204 ~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 204 KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 468999999531 111 111 112356688899999999999998774
No 129
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.07 E-value=1.2e-09 Score=106.92 Aligned_cols=117 Identities=18% Similarity=0.182 Sum_probs=82.8
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+.+.++.+|||+|||+|+.+..++.. +.++|+|+|+++.+++.++++++.. ++...+.+..+|....+.
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--------g~~~~v~~~~~d~~~~~~-- 303 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--------GLTIKAETKDGDGRGPSQ-- 303 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--------CCCeEEEEeccccccccc--
Confidence 45668899999999999999888764 3468999999999999999998742 223234446677654331
Q ss_pred ccCCCCCeeEEEec------ccccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQ------FAMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~------~~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
+...++||.|++. .+++...+ +.. ....+|.++.++|||||.++.++.
T Consensus 304 -~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 304 -WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred -cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 0134689999863 23332211 111 246899999999999999998764
No 130
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=2.3e-09 Score=97.36 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=77.8
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++... .++++++|+.+.. ... ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------------~~~~~~~D~~~~l-~~~--~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------------GGTVHEGDLYDAL-PTA--LR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------------CCEEEEeechhhc-chh--cC
Confidence 458999999999999988764 3347999999999999999988631 2478888886521 111 12
Q ss_pred CCeeEEEecccc------ccc------C----------CCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAM------HYS------W----------STEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l------~~~------~----------~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
++||+|+++--. ..+ + +..+-...++..+.+.|+|||.+++.+..
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 579999987421 110 0 01122468888899999999999987753
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.07 E-value=9.3e-10 Score=106.03 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=82.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++.. +++. .+++++++|+.+..- ....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~--------Ngl~~~~v~~i~~D~~~~l~-~~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLR-TYRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCcEEEEEccHHHHHH-HHHh
Confidence 46789999999999998876666666899999999999999998864 3443 368999999976421 1000
Q ss_pred CCCCeeEEEecccccc-----cCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..++||+|++.--..- ++........++..+.++|+|||.++...
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2458999998743210 00011245566677889999999988644
No 132
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.07 E-value=9.5e-10 Score=113.87 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=85.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++.. +++. .++.++++|+.+..- . .
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~--------ng~~~~~v~~i~~D~~~~l~-~---~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL--------NGLSGRQHRLIQADCLAWLK-E---A 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCccceEEEEccHHHHHH-H---c
Confidence 5789999999999999999887666899999999999999999874 3333 478999999875321 0 1
Q ss_pred CCCeeEEEecccc-------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAM-------HYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l-------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++||+|++.--. ...+....+...++..+.++|+|||.+++++
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4689999996321 1122234567788999999999999988765
No 133
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.07 E-value=5.1e-10 Score=97.28 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCCEEEEecCCcccc----HHHHHH---cCC---CEEEEEeCChHHHHHHHHHhcC-CCcc------------------c
Q 017369 84 RGDVVLDLACGKGGD----LIKWDK---AKI---GYYVGIDIAEGSIEDCRTRYNG-DADH------------------H 134 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~----~~~l~~---~~~---~~v~gvD~s~~~l~~a~~~~~~-~~~~------------------~ 134 (372)
+..+|+..||++|.- ++.+.. ... -+++|+|+|+.+|+.|++-.-. ...+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999973 222222 112 3799999999999999873210 0000 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-...+...+.|.+.|+.+.+. +.+.||+|+|.+++.|+ +.+....+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0001123468999999987222 46899999999999998 77888999999999999999998753
No 134
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.6e-09 Score=97.08 Aligned_cols=130 Identities=21% Similarity=0.289 Sum_probs=92.1
Q ss_pred cccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC
Q 017369 63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (372)
Q Consensus 63 ~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 141 (372)
+++...+..=-+-++..+....+.+|||+|||.|-++..+++.. ..+++.+|++..+++.|++++... +..
T Consensus 137 VFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N--------~~~ 208 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--------GVE 208 (300)
T ss_pred CCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc--------CCC
Confidence 44444443333445555555566799999999999999998865 457999999999999999998742 112
Q ss_pred cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE-ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 142 ~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+..++..|..+.. .++||+|+|+--+|--.... .-..++++...+.|++||.|.+..-.
T Consensus 209 -~~~v~~s~~~~~v-------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 209 -NTEVWASNLYEPV-------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred -ccEEEEecccccc-------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 2256677766432 24899999998877431111 12348999999999999998877643
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.8e-09 Score=98.20 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=78.7
Q ss_pred EEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
+|||+|||+|..+..++.... ..|+|+|+|+.+++.|++++.. .++ .++.++++|+.+.- .++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--------~~l-~~~~~~~~dlf~~~-------~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--------NGL-VRVLVVQSDLFEPL-------RGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--------cCC-ccEEEEeeeccccc-------CCc
Confidence 799999999999999987655 4899999999999999999874 333 45666776765422 248
Q ss_pred eeEEEeccc-----cc--------c-----cC---CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 166 FDICSCQFA-----MH--------Y-----SW---STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 166 fD~V~~~~~-----l~--------~-----~~---~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
||+|+++-- .. | ++ +..+-...++.++.+.|+|||.+++.+.
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 999999731 00 0 00 1123467888999999999999988775
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=2.2e-09 Score=98.69 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.+.+||++|||+|..+..+++.. ..+++++|+++.+++.|++.+...+. .--..+++++.+|+.+.--.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~---- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD---- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence 344599999999999888887764 56799999999999999987643110 00124678888887652211
Q ss_pred CCCCeeEEEecccccccCCCHHH--HHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..++||+|++....... .... ...+++.+.+.|+|||.+++...+
T Consensus 142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 24689999987653221 1112 468899999999999999987544
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.04 E-value=2e-09 Score=96.82 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+..+|||+|||+|..+..++.. ..++++++|+++++++.|++++.. .++..+++++.+|+.+.- ....
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~--------~gl~~~i~~~~gda~~~L-~~l~ 137 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK--------AGVDHKINFIQSDALSAL-DQLL 137 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEccHHHHH-HHHH
Confidence 46789999999999877766653 356899999999999999999874 455667999999997631 1100
Q ss_pred --CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.++||+|++... ......++..+.+.|+|||.+++.-
T Consensus 138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 02468999987532 2455678999999999999988653
No 138
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=92.44 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeE
Q 017369 70 NNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (372)
Q Consensus 70 ~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 145 (372)
..|+..++.... ...+..|||+|||+|..+..++.. +.+.++++|.|+.++..|.+++.. .++...+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr--------~~l~g~i~ 202 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR--------LKLSGRIE 202 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH--------HhhcCceE
Confidence 456665555432 335568999999999999998874 556799999999999999999874 44556777
Q ss_pred EEECcCcccccccccCCCCCeeEEEecc----------------------cccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 146 LICGDCYEVHLDKVLADDAPFDICSCQF----------------------AMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 146 ~~~~D~~~~~~~~~~~~~~~fD~V~~~~----------------------~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.++.++....+.+.-...++.|+++++- ++---.+.-+....++.-+.|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 7766665444433322568999999973 111112223445677788899999999999
Q ss_pred EEeC
Q 017369 204 GTMP 207 (372)
Q Consensus 204 ~~~~ 207 (372)
+.+.
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 8774
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=99.03 E-value=2.8e-09 Score=99.85 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=82.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHH--hcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
....+||++|||+|..+..+++.. ..+|++||+++++++.|++. +.... +..--..+++++.+|+.+.-..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~----~~~~~DpRV~vvi~Da~~fL~~-- 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN----KSAFFDNRVNVHVCDAKEFLSS-- 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc----cccCCCCceEEEECcHHHHHHh--
Confidence 445799999999999888888754 46899999999999999962 11000 0011146899999999863211
Q ss_pred cCCCCCeeEEEeccccccc-CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 160 LADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+.||+|++...-... .....--..+++.+.+.|+|||.+++...++
T Consensus 223 --~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 223 --PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred --cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 34689999997521100 0011123678999999999999998765433
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=2.1e-09 Score=105.94 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=83.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.+++++.. .++. ++.++++|+.+...
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--------~g~~-~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--------LGLT-NIETKALDARKVHE-- 315 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-eEEEEeCCcccccc--
Confidence 4567889999999999999988774 356899999999999999998874 2332 48999999876531
Q ss_pred ccCCCCCeeEEEeccc------cccc-----CCCHHH-------HHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFA------MHYS-----WSTEAR-------ARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~------l~~~-----~~~~~~-------~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..++||+|++..- +.+. ..+..+ ...+|.++.++|||||.++.++.
T Consensus 316 ~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 316 K--FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred h--hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 0 1268999997531 1110 001122 25689999999999999987653
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.00 E-value=9e-09 Score=92.43 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.||.+|||.|.|+|.++..+++. +.++|+.+|+.++..+.|+++++. .++..++.+.+.|
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~--------~gl~~~v~~~~~D 100 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER--------HGLDDNVTVHHRD 100 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------TTCCTTEEEEES-
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH--------cCCCCCceeEecc
Confidence 455667778899999999999999999998863 567999999999999999999875 5566789999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc-CCCcEEEEEeCChHHHHHHHhh
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~li~~~~~~~~~~~~l~~ 218 (372)
+.+..+... .+..+|.|+...- ++-.++..+.++| ||||++++-.|+.+.+...+..
T Consensus 101 v~~~g~~~~--~~~~~DavfLDlp---------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~ 158 (247)
T PF08704_consen 101 VCEEGFDEE--LESDFDAVFLDLP---------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA 158 (247)
T ss_dssp GGCG--STT---TTSEEEEEEESS---------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred eeccccccc--ccCcccEEEEeCC---------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence 976444211 1368999986543 3446889999999 8999999999998776654443
No 142
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=2.3e-09 Score=93.30 Aligned_cols=115 Identities=23% Similarity=0.373 Sum_probs=77.4
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCccccccc------------------------
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK------------------------ 138 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~------------------------ 138 (372)
.+..+|||||-.|.++..+++. +...++|+||++..|+.|++.........-.-.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999998875 444699999999999999998763221100000
Q ss_pred --CCCcCeEEE-------ECcCcccccccccCCCCCeeEEEeccccccc---CCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 139 --KFSFPARLI-------CGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 139 --~~~~~~~~~-------~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+..++.|. ..|+. .+ ....||+|+|.....|+ |. .+.+..+|+.++++|.|||+|++.-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~-----~~~~fDiIlcLSiTkWIHLNwg-D~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DM-----IQPEFDIILCLSITKWIHLNWG-DDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hh-----ccccccEEEEEEeeeeEecccc-cHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 000111111 11111 11 34789999997644333 33 3678999999999999999998764
No 143
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.00 E-value=2.8e-09 Score=93.50 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+....|.|+|||.+.++. .....|+.+|+-+ .+-.++.+|+.++|+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~ 225 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E 225 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence 456789999999997664 3344699999843 134568899999998 8
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++.|++++..+|.- .++..++.++.|+|++||.+.+..
T Consensus 226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence 999999999888764 678999999999999999997664
No 144
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.1e-09 Score=98.31 Aligned_cols=131 Identities=23% Similarity=0.331 Sum_probs=96.0
Q ss_pred ccccchhhhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC
Q 017369 62 PIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF 140 (372)
Q Consensus 62 ~~~~~~~~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 140 (372)
|.+....+..-+.+++.++ ...+|..|||.-||||+++.+....+. +++|.|++..|++-|+.+++.++.
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-------- 244 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-------- 244 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc--------
Confidence 3444455555566666555 577899999999999999999865444 899999999999999999875321
Q ss_pred CcCeEEEEC-cCcccccccccCCCCCeeEEEeccccc----ccCCC-HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 141 SFPARLICG-DCYEVHLDKVLADDAPFDICSCQFAMH----YSWST-EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 141 ~~~~~~~~~-D~~~~~~~~~~~~~~~fD~V~~~~~l~----~~~~~-~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....+... |+..+++ ++.++|.|++.--.- .--.. .+-...+|+.++++|++||++++..|
T Consensus 245 -~~~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 245 -EDYPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CceeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 13444444 9999998 566899999953110 00001 23468899999999999999999988
No 145
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.98 E-value=6e-08 Score=87.26 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=88.6
Q ss_pred CCCEEEEecCCccccHHHHHHcC---CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..-+||||+||.|+.....+... ...|.-.|+|+..++..++..+. .++..-++|.++|+.+..--..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------~gL~~i~~f~~~dAfd~~~l~~- 205 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------RGLEDIARFEQGDAFDRDSLAA- 205 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------cCCccceEEEecCCCCHhHhhc-
Confidence 56799999999999988877643 35799999999999999998875 4566667999999987432111
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-....++++++..+.++ .+-+-+...|..+.+++.|||++|.|.
T Consensus 206 -l~p~P~l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 -LDPAPTLAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred -cCCCCCEEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 23457999998888775 444457778999999999999999887
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.97 E-value=4.1e-09 Score=93.10 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCEEEEecCCccccHHHHHHc----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.+.+|||+|||+|.++..+++. ....|+|+|+++.+++.|+++.. ++.++++|+...++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------------~~~~~~~D~~~~~~--- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------------EATWINADALTTEF--- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------------CCEEEEcchhcccc---
Confidence 4679999999999998887753 24579999999999999997754 37889999876443
Q ss_pred cCCCCCeeEEEeccccccc--------CCCHHHHHHHHHHHHHhcCCCcE
Q 017369 160 LADDAPFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGT 201 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~ 201 (372)
+++||+|+++--..-. .....-...++..+.+++++|+.
T Consensus 112 ---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 ---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 4689999998533211 01113356688888887777775
No 147
>PLN02366 spermidine synthase
Probab=98.97 E-value=7.9e-09 Score=96.22 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++..+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+..... .--..+++++.+|+...--. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-----~~~dpRv~vi~~Da~~~l~~--~- 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-----GFDDPRVNLHIGDGVEFLKN--A- 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-----ccCCCceEEEEChHHHHHhh--c-
Confidence 457899999999999999988764 45799999999999999998753110 01145799999998653210 0
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.++||+|++...-.+.....---..+++.+.++|+|||.++...
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 246899999875443321111123578999999999999997643
No 148
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.95 E-value=1.1e-08 Score=89.30 Aligned_cols=108 Identities=8% Similarity=-0.020 Sum_probs=79.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++.....+|+++|+++.+++.|+++++.. ++ .++.++++|+.+... . .
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~--------~~-~~v~~~~~D~~~~l~-~---~ 118 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL--------KA-GNARVVNTNALSFLA-Q---P 118 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh--------CC-CcEEEEEchHHHHHh-h---c
Confidence 457899999999999998766666678999999999999999987642 22 268999999865321 0 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHH--hcCCCcEEEEEeCC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD 208 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~--~LkpgG~li~~~~~ 208 (372)
..+||+|++.--... .-...++..+.. .|+|+|.+++..+.
T Consensus 119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 357999999866322 123345555554 48999999988754
No 149
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.95 E-value=7.4e-09 Score=93.72 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=79.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...+..+|||||+|.|.++..++.. +..+++.+|+ |..++.+++ .. +++++.+|+. .++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~--------------rv~~~~gd~f-~~~--- 156 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-AD--------------RVEFVPGDFF-DPL--- 156 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TT--------------TEEEEES-TT-TCC---
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-cc--------------ccccccccHH-hhh---
Confidence 4456679999999999999999875 4447999998 888888877 22 6999999998 454
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC--cEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~li~~ 205 (372)
|. +|++++..++|+. +.++...+|+++++.|+|| |++++.
T Consensus 157 --P~--~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --PV--ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --SS--ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --cc--ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 33 9999999999987 6789999999999999999 998764
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.94 E-value=6.6e-09 Score=90.60 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.....+||||||.|.++..++... ...++|+|++...+..|..+.... -..|+.++++|+...- .. +.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---------~l~Nv~~~~~da~~~l-~~-~~ 84 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---------GLKNVRFLRGDARELL-RR-LF 84 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---------TTSSEEEEES-CTTHH-HH-HS
T ss_pred CCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---------cccceEEEEccHHHHH-hh-cc
Confidence 445599999999999999998864 446999999999999998887631 1458999999997621 11 22
Q ss_pred CCCCeeEEEecccccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEA------RARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l 216 (372)
+++++|.|..++-=-|. ... --..++..++++|+|||.+.+.|-+.+.....+
T Consensus 85 ~~~~v~~i~i~FPDPWp--K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~ 143 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWP--KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML 143 (195)
T ss_dssp TTTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred cCCchheEEEeCCCCCc--ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 56899999887643321 000 125799999999999999999997776554433
No 151
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.93 E-value=4.5e-09 Score=96.75 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++.+..+-.+.+|||+|||+|.++...++++..+|+|||-|.-+ +.|++.... +++...++++.+.+.
T Consensus 49 r~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~--------N~~~~ii~vi~gkvE 119 (346)
T KOG1499|consen 49 RNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD--------NGLEDVITVIKGKVE 119 (346)
T ss_pred HHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh--------cCccceEEEeecceE
Confidence 33345555556889999999999999998888888889999988744 888888765 455667999999999
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++.+ |.+++|+|++-+.=++++- +.-+..+|-.=-+.|+|||.++
T Consensus 120 di~L-----P~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 120 DIEL-----PVEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEec-----CccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEc
Confidence 8866 5689999999764444321 1224445555568999999986
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.93 E-value=3.6e-09 Score=97.14 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=82.1
Q ss_pred CCEEEEecCCcccc----HHHHHHc----C-CCEEEEEeCChHHHHHHHHHhcCCC------c---------------c-
Q 017369 85 GDVVLDLACGKGGD----LIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDA------D---------------H- 133 (372)
Q Consensus 85 ~~~VLDlGcG~G~~----~~~l~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~------~---------------~- 133 (372)
..+|+..||++|.= +..+.+. . .-+|+|+|+|+.+|+.|++-.-... . .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999972 2222221 1 2369999999999999987521100 0 0
Q ss_pred cccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+-...+...+.|.+.|+.+.+++ +.+.||+|+|.+++.|+ +.+...++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 000112335688889998764431 35789999999999997 67889999999999999999987653
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.93 E-value=1.3e-08 Score=100.34 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+..++..+...++.+|||+|||+|.++..++... ..|+|+|+|+.|++.|+++... .++ .++.++++|+.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~--------~~~-~~v~~~~~d~~ 355 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR--------NGL-DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEeChH
Confidence 3444444455678899999999999999887654 5899999999999999998763 222 36899999986
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
+......+ .+++||+|++.---.- ....+..+.+ ++|++.++++. ++..+..
T Consensus 356 ~~l~~~~~-~~~~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaR 407 (443)
T PRK13168 356 EDFTDQPW-ALGGFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLAR 407 (443)
T ss_pred Hhhhhhhh-hcCCCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhc
Confidence 53210001 3467999987543221 2244555544 68999888887 4444443
No 154
>PRK03612 spermidine synthase; Provisional
Probab=98.91 E-value=6.8e-09 Score=103.95 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHH--hcCCCcccccccCC-CcCeEEEECcCccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKF-SFPARLICGDCYEVHLDK 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~ 158 (372)
++..+|||+|||+|..+..+++.+. .+++++|+++++++.|+++ +.... ...+ .++++++.+|+.+.--.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~-----~~~~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALN-----GGALDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhh-----ccccCCCceEEEEChHHHHHHh-
Confidence 4567999999999999998887654 6899999999999999983 22100 0011 35789999998763211
Q ss_pred ccCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..++||+|++......... ..---..+++.+.+.|+|||.+++...
T Consensus 370 ---~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 370 ---LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred ---CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 2468999999864432100 001124689999999999999998653
No 155
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=3.6e-08 Score=84.92 Aligned_cols=126 Identities=25% Similarity=0.284 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHH-hCCCCCEEEEecCCccccHHHHHHc--CCC--------EEEEEeCChHHHHHHHHHhcCCCcccccc
Q 017369 69 LNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA--KIG--------YYVGIDIAEGSIEDCRTRYNGDADHHQRR 137 (372)
Q Consensus 69 ~~~~~k~~l~~~-~~~~~~~VLDlGcG~G~~~~~l~~~--~~~--------~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 137 (372)
++..+...+..+ ...++..|||..||+|.++.+.+.. ... .++|.|+++.+++.|++++..
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-------- 83 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-------- 83 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh--------
Confidence 344455555544 4668899999999999999887552 222 388999999999999999874
Q ss_pred cCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 138 KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 138 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.++...+.+.+.|+.++++ .++.+|+|+++.-.---.... .-...+++++.++|++ ..++++..+
T Consensus 84 ag~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp TT-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred cccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 4455678999999999885 578999999975322111111 2235678888999999 444444433
No 156
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.1e-08 Score=86.21 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.+.+|+|+|||||.++.-.+..+...|+|+|+++++++.|+++..+ +..++.|+++|+.+..
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----------l~g~v~f~~~dv~~~~------- 106 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----------LLGDVEFVVADVSDFR------- 106 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------hCCceEEEEcchhhcC-------
Confidence 36789999999999999888878888999999999999999999873 3557999999998643
Q ss_pred CCCeeEEEecc
Q 017369 163 DAPFDICSCQF 173 (372)
Q Consensus 163 ~~~fD~V~~~~ 173 (372)
..+|.|+++-
T Consensus 107 -~~~dtvimNP 116 (198)
T COG2263 107 -GKFDTVIMNP 116 (198)
T ss_pred -CccceEEECC
Confidence 6788888764
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.84 E-value=2.2e-08 Score=94.25 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=72.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++... .++ .+++|+++|+.+.... ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~--------~~l-~~v~~~~~D~~~~~~~----~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE--------LGL-TNVQFQALDSTQFATA----QG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEcCHHHHHHh----cC
Confidence 56899999999999999988754 5899999999999999998864 233 3699999999765321 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+.||+|++.---. .....+..+...++|++.++++.
T Consensus 239 ~~~D~Vv~dPPr~-------G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 239 EVPDLVLVNPPRR-------GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCCeEEEECCCCC-------CccHHHHHHHHHcCCCeEEEEEC
Confidence 5799999874311 11112222334467877776665
No 158
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.84 E-value=2.1e-08 Score=89.08 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
...++||||+|.|..+..++. ...+|+++|+|+.|....+++. .+ +.|..+..- .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg----------------~~--vl~~~~w~~-----~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKG----------------FT--VLDIDDWQQ-----TD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCC----------------Ce--EEehhhhhc-----cC
Confidence 356899999999999999865 4558999999999987766532 12 223322211 34
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+||+|.|.+++-.. .++..+|+.+++.|+|+|++++.+
T Consensus 150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 689999999999765 678899999999999999998776
No 159
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.82 E-value=1e-06 Score=82.27 Aligned_cols=235 Identities=13% Similarity=0.118 Sum_probs=130.9
Q ss_pred CccccchhhhHHHHHHHHh--hccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc
Q 017369 28 SHFLEDESTKVFARKVADH--YSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA 105 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~va~~--Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~ 105 (372)
..+.-++.-...|++|... |- +.+ .+ ...+......+... +.++..|+|+|||+|.-+..++..
T Consensus 32 ~k~~YD~~Gs~LFe~It~lpEYY--ptr-----~E-----~~iL~~~~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~a 97 (319)
T TIGR03439 32 TLLLYDDEGLKLFEEITYSPEYY--LTN-----DE-----IEILKKHSSDIAAS--IPSGSMLVELGSGNLRKVGILLEA 97 (319)
T ss_pred hHhhhcchHHHHHHHHHcCCccC--ChH-----HH-----HHHHHHHHHHHHHh--cCCCCEEEEECCCchHHHHHHHHH
Confidence 4455556667788887542 21 111 11 12333333334332 356779999999999866555442
Q ss_pred -----CCCEEEEEeCChHHHHHHHHHhc-CCCcccccccCCCcCeEEEECcCcccc--cccccCCCCCeeEEEecc-ccc
Q 017369 106 -----KIGYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQF-AMH 176 (372)
Q Consensus 106 -----~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~fD~V~~~~-~l~ 176 (372)
....|+++|+|.++++.+..++. ..- -...+.-+++|..+.- +.... ......+++... ++.
T Consensus 98 L~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~--------p~l~v~~l~gdy~~~l~~l~~~~-~~~~~r~~~flGSsiG 168 (319)
T TIGR03439 98 LERQKKSVDYYALDVSRSELQRTLAELPLGNF--------SHVRCAGLLGTYDDGLAWLKRPE-NRSRPTTILWLGSSIG 168 (319)
T ss_pred HHhcCCCceEEEEECCHHHHHHHHHhhhhccC--------CCeEEEEEEecHHHHHhhccccc-ccCCccEEEEeCcccc
Confidence 23469999999999999999886 210 0123444788876531 11000 123356666654 777
Q ss_pred ccCCCHHHHHHHHHHHHH-hcCCCcEEEEEeC---ChHHHHHHHhhhc--------------CCccCCeE-------EEE
Q 017369 177 YSWSTEARARRALANVSA-LLRPGGTFIGTMP---DANVIIKKLREVE--------------GLAIGNSV-------YWI 231 (372)
Q Consensus 177 ~~~~~~~~~~~~l~~i~~-~LkpgG~li~~~~---~~~~~~~~l~~~~--------------~~~~~~~~-------~~i 231 (372)
++ +......+|+++++ .|+|||.|++.+- +.+.+........ +...|... +..
T Consensus 169 Nf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a 246 (319)
T TIGR03439 169 NF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLG 246 (319)
T ss_pred CC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCccccCHHHcEEEE
Confidence 76 56788999999999 9999999887652 2333332222110 11112111 111
Q ss_pred EeCchhhhccc--CC--C-CCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEec
Q 017369 232 RLDEEFADKKF--KS--S-RPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 232 ~f~~~~~~~~f--~~--~-~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.++.......+ .. . ..-+..+.|.-.+.+... -|=++.+.+..+++.+||+++..+
T Consensus 247 ~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W 308 (319)
T TIGR03439 247 EWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVW 308 (319)
T ss_pred EEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEE
Confidence 22222111100 00 0 001223444444444422 377889999999999999998775
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=3e-08 Score=90.57 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.+++++.. ..++.++++|
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D 83 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence 45555666666678899999999999999999876 45899999999999999988752 2369999999
Q ss_pred CcccccccccCCCCCeeEEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.+.++ ..||.|+++...+
T Consensus 84 ~~~~~~-------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 84 ALKVDL-------PEFNKVVSNLPYQ 102 (258)
T ss_pred cccCCc-------hhceEEEEcCCcc
Confidence 987765 3489999876643
No 161
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=4.3e-08 Score=87.00 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=89.6
Q ss_pred CEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
..+||||||.|.++..++...+. .++|||+....+..|.+++... ++. |+.+++.|+..+- +.+.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~--------~l~-Nlri~~~DA~~~l--~~~~~~~ 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL--------GLK-NLRLLCGDAVEVL--DYLIPDG 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc--------CCC-cEEEEcCCHHHHH--HhcCCCC
Confidence 58999999999999999987554 5999999999999999888742 222 8999999997642 2232566
Q ss_pred CeeEEEecccccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 165 PFDICSCQFAMHYSWSTEA------RARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~------~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
+.|-|..+|.=-|. -.. -...+++.+.+.|+|||.+.+.|-+.+....
T Consensus 119 sl~~I~i~FPDPWp--KkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 119 SLDKIYINFPDPWP--KKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CeeEEEEECCCCCC--CccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 99999988754442 001 1257999999999999999999987766555
No 162
>PLN02672 methionine S-methyltransferase
Probab=98.79 E-value=4.5e-08 Score=103.79 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=82.9
Q ss_pred CCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcc-------cccccCCCcCeEEEECcCccccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-------HQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
+.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++....+.. .+..+....++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999987753 468999999999999999988642110 00011223469999999875321
Q ss_pred ccccCCCCCeeEEEeccc--------------cc-------c-----c--------CCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 157 DKVLADDAPFDICSCQFA--------------MH-------Y-----S--------WSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~--------------l~-------~-----~--------~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
. ...+||+|+++-- .. | . -+...-.+.++.++.+.|+|||.+
T Consensus 199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 0 1236999999731 10 1 0 011123477888899999999999
Q ss_pred EEEeCC
Q 017369 203 IGTMPD 208 (372)
Q Consensus 203 i~~~~~ 208 (372)
++.+..
T Consensus 275 ~lEiG~ 280 (1082)
T PLN02672 275 IFNMGG 280 (1082)
T ss_pred EEEECc
Confidence 998854
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.79 E-value=2.3e-07 Score=86.65 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred hhcCccccchhhhHHHHHHHHHHh---C--CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCC
Q 017369 58 REASPIIHLKKLNNWIKSVLVQLY---A--RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDA 131 (372)
Q Consensus 58 r~~s~~~~~~~~~~~~k~~l~~~~---~--~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~ 131 (372)
+--.++-.--.|-.|+..+|.... + .++.+|||||||+|.+...++.. ...+++|+|+++.+++.|++++..
T Consensus 83 ~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~-- 160 (321)
T PRK11727 83 YLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA-- 160 (321)
T ss_pred CcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--
Confidence 333444333455566666654321 1 24689999999999777666543 345799999999999999999874
Q ss_pred ccccccc-CCCcCeEEEE-CcCcccccccccCCCCCeeEEEeccccc
Q 017369 132 DHHQRRK-KFSFPARLIC-GDCYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 132 ~~~~~~~-~~~~~~~~~~-~D~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+ ++..++.+.+ .|..... .....+.+.||+|+|+--++
T Consensus 161 ------Np~l~~~I~~~~~~~~~~i~-~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 161 ------NPGLNGAIRLRLQKDSKAIF-KGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred ------ccCCcCcEEEEEccchhhhh-hcccccCCceEEEEeCCCCc
Confidence 3 3555677754 3333221 11111356899999997665
No 164
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.79 E-value=5.5e-08 Score=87.57 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=97.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc----------c---------cccCCCcCe
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH----------Q---------RRKKFSFPA 144 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------~---------~~~~~~~~~ 144 (372)
.+.++||||||+-..-..-+......++..|.++..++..++-+++.+.-. . ....+...+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998543222222345579999999999998877665431100 0 000111123
Q ss_pred -EEEECcCcccc-cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCC
Q 017369 145 -RLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGL 222 (372)
Q Consensus 145 -~~~~~D~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~ 222 (372)
.++..|+.+.+ +......+.+||+|++.+++..+..+.+....+++++.++|||||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~--------------- 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV--------------- 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE---------------
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE---------------
Confidence 36677886643 2110001235999999999999988999999999999999999999887542
Q ss_pred ccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 223 AIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 223 ~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+...|.+. .. .++..-++.+.+++.++++||.++...
T Consensus 201 -l~~t~Y~vG-----------------~~---------~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 -LGSTYYMVG-----------------GH---------KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -SS-SEEEET-----------------TE---------EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred -cCceeEEEC-----------------CE---------ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 111223220 00 011135567789999999999998775
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.78 E-value=2.6e-08 Score=91.73 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..++..+...++.+|||+|||+|.++..++.... +|+|+|+++.|++.++++.. ..+++++++|+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~ 96 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDA 96 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChh
Confidence 345555555667889999999999999999887754 89999999999999988764 23699999999
Q ss_pred cccccccccCCCCCeeEEEeccc
Q 017369 152 YEVHLDKVLADDAPFDICSCQFA 174 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~ 174 (372)
.+.++ ++-.+|.|+++.-
T Consensus 97 ~~~~~-----~~~~~~~vv~NlP 114 (272)
T PRK00274 97 LKVDL-----SELQPLKVVANLP 114 (272)
T ss_pred hcCCH-----HHcCcceEEEeCC
Confidence 88765 2212588887654
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.78 E-value=6.1e-08 Score=87.97 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=81.3
Q ss_pred CCEEEEecCCcccc----HHHHHHcC------CCEEEEEeCChHHHHHHHHHhcC-CCc------c-------------c
Q 017369 85 GDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNG-DAD------H-------------H 134 (372)
Q Consensus 85 ~~~VLDlGcG~G~~----~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~-~~~------~-------------~ 134 (372)
.-+|+-.||++|.= +..+.+.. .-+|+|+|||..+|+.|+.-.-. ... . .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 67999999999982 22222222 23699999999999999763211 000 0 0
Q ss_pred ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+-...+...|.|...|+...+. ..+.||+|+|-++|.|+ +.+...+++..++..|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0011223357778888876552 24789999999999998 7788999999999999999998764
No 167
>PLN02476 O-methyltransferase
Probab=98.78 E-value=7.8e-08 Score=87.75 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
..+..+|||+|||+|..+..++.. ..+.++.+|.+++..+.|++.++. .++..+++++.+|+.+.- ...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~--------aGl~~~I~li~GdA~e~L-~~l 186 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL--------AGVSHKVNVKHGLAAESL-KSM 186 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEEcCHHHHH-HHH
Confidence 346789999999999988888764 245799999999999999999975 556678999999987631 110
Q ss_pred c--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 L--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ...++||+|+.... ......+++.+.++|+|||.+++.
T Consensus 187 ~~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HhcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 0 01368999987543 356778899999999999998875
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.77 E-value=4.3e-08 Score=95.79 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHhCC-----CCCEEEEecCCccccHHHHHHcC-----CCEEEEEeCChHHHHHHHHHhcCCCccccccc
Q 017369 69 LNNWIKSVLVQLYAR-----RGDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK 138 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 138 (372)
+...+...+...... .+..|||+|||+|.++...+.+. ..+|++||-++.++...+++... .
T Consensus 166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--------n 237 (448)
T PF05185_consen 166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--------N 237 (448)
T ss_dssp HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--------c
Confidence 333444444444333 25789999999998877666543 45899999999988887776442 4
Q ss_pred CCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 139 ~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
++..+|+++++|+++... +.++|+|++-..=.. ... +-....|....+.|||||.++
T Consensus 238 ~w~~~V~vi~~d~r~v~l------pekvDIIVSElLGsf-g~n-El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 238 GWGDKVTVIHGDMREVEL------PEKVDIIVSELLGSF-GDN-ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTTTEEEEES-TTTSCH------SS-EEEEEE---BTT-BTT-TSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCCeEEEEeCcccCCCC------CCceeEEEEeccCCc-ccc-ccCHHHHHHHHhhcCCCCEEe
Confidence 567789999999999876 359999998542211 122 234457888899999999987
No 169
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.77 E-value=8.7e-07 Score=80.35 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhC-----CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCccc-----------
Q 017369 71 NWIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH----------- 134 (372)
Q Consensus 71 ~~~k~~l~~~~~-----~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----------- 134 (372)
.++...|..... ....+||-.|||-|+++.+++..+. .+.|.|.|--|+-...-.+.......
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 344444454443 2457999999999999999998766 79999999999766554433210000
Q ss_pred --------c-cc-----------cCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHH
Q 017369 135 --------Q-RR-----------KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (372)
Q Consensus 135 --------~-~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~ 194 (372)
+ +. .....+.....||+.+....+. ..+.||+|++.|.+ ++..++...|+.|.+
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFI----DTAENIIEYIETIEH 190 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEe----echHHHHHHHHHHHH
Confidence 0 00 0112245555666655432100 13799999887544 567899999999999
Q ss_pred hcCCCcEEE
Q 017369 195 LLRPGGTFI 203 (372)
Q Consensus 195 ~LkpgG~li 203 (372)
+|||||+.|
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999665
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.74 E-value=1e-07 Score=84.80 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe-EEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|||+|||+|.++..++..+..+|+|+|+++.|+........ ++ .+...|+......+...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~--------------~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE--------------RVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC--------------CeeEeecCCcccCCHhHcCC
Confidence 3678999999999999999988877789999999988876222111 12 23333444322211110
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-..+|+++++.. ..+..+.+.|+| |.+++-+
T Consensus 140 d~~~~DvsfiS~~------------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLI------------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehH------------hHHHHHHHHhCc-CeEEEEc
Confidence 1135676655433 357889999999 7765443
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.74 E-value=6.1e-08 Score=84.98 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=81.4
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~ 159 (372)
...+||||||++|.-+..++.. ..++|+.+|++++..+.|++.+.. .++..+++++.+|+.+.- +...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~--------ag~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK--------AGLDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH--------TTGGGGEEEEES-HHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh--------cCCCCcEEEEEeccHhhHHHHHhc
Confidence 5579999999999988888864 356999999999999999998874 455668999999997531 1100
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. +.++||+|+....- .+...++..+.++|+|||.+++.-
T Consensus 117 ~-~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 117 G-EEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp T-TTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred c-CCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEcc
Confidence 0 23689999986543 345578888889999999998763
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.74 E-value=4.8e-08 Score=90.50 Aligned_cols=90 Identities=17% Similarity=0.313 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||||||+|.++..++.. ..+|+|+|+++.|++.+++++.. .+...+++++++|
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~--------~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN--------SPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh--------cCCCCcEEEEECC
Confidence 45566666666778899999999999999888765 45799999999999999998763 1223479999999
Q ss_pred CcccccccccCCCCCeeEEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~ 176 (372)
+.+.++ ..||+|+++.-.+
T Consensus 94 al~~~~-------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 94 ALKTEF-------PYFDVCVANVPYQ 112 (294)
T ss_pred Hhhhcc-------cccCEEEecCCcc
Confidence 987654 4689998865443
No 173
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.73 E-value=1.2e-07 Score=83.22 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=83.9
Q ss_pred CCCCCEEEEecCCccccHHHHHHc-C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE-CcCccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~ 158 (372)
..+..+|||||.+.|.-+..++.. + .++++.+|+++++.+.|++++.+ .++..++..+. +|+.+.-..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~--------ag~~~~i~~~~~gdal~~l~~- 127 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE--------AGVDDRIELLLGGDALDVLSR- 127 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH--------cCCcceEEEEecCcHHHHHHh-
Confidence 357789999999999887777764 2 46899999999999999999985 56677788888 587653321
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ..++||+|+.... ..+...++..+.++|+|||.+++.
T Consensus 128 -~-~~~~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -L-LDGSFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -c-cCCCccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 1 3589999986543 355678999999999999999875
No 174
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.9e-08 Score=89.96 Aligned_cols=133 Identities=24% Similarity=0.383 Sum_probs=95.5
Q ss_pred chhhhHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEE
Q 017369 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG 112 (372)
Q Consensus 33 ~~~~~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~g 112 (372)
++..-++++++|.|+++.....+ ..++.++... ..+..++|+|||.|..+.. .+...++|
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~W---------------p~v~qfl~~~--~~gsv~~d~gCGngky~~~---~p~~~~ig 70 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPW---------------PMVRQFLDSQ--PTGSVGLDVGCGNGKYLGV---NPLCLIIG 70 (293)
T ss_pred HHHhHHHHHHhhhhccccccCcc---------------HHHHHHHhcc--CCcceeeecccCCcccCcC---CCcceeee
Confidence 33344577777777553222211 1133333332 4589999999999965432 24457999
Q ss_pred EeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 113 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
.|++...+.-|+.... .....+|+..+|+ .+.+||.+++..++||+ .+......+++++
T Consensus 71 ~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~~~s~d~~lsiavihhl-sT~~RR~~~l~e~ 129 (293)
T KOG1331|consen 71 CDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----REESFDAALSIAVIHHL-STRERRERALEEL 129 (293)
T ss_pred cchhhhhccccccCCC---------------ceeehhhhhcCCC-----CCCccccchhhhhhhhh-hhHHHHHHHHHHH
Confidence 9999988887765321 2567889999988 78899999999999996 5667788999999
Q ss_pred HHhcCCCcEEEEEe
Q 017369 193 SALLRPGGTFIGTM 206 (372)
Q Consensus 193 ~~~LkpgG~li~~~ 206 (372)
.+.|+|||..++.+
T Consensus 130 ~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 130 LRVLRPGGNALVYV 143 (293)
T ss_pred HHHhcCCCceEEEE
Confidence 99999999977765
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.72 E-value=1.2e-07 Score=87.08 Aligned_cols=126 Identities=19% Similarity=0.295 Sum_probs=86.0
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-cCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|||+.|=||+++...+..+..+|+.||.|..+++.|++++.- +++. .++.|+++|+.+.- .. ..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l--------Ng~~~~~~~~~~~Dvf~~l-~~-~~ 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL--------NGLDLDRHRFIQGDVFKFL-KR-LK 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH--------TT-CCTCEEEEES-HHHHH-HH-HH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHH-HH-Hh
Confidence 46889999999999999998887777899999999999999999863 3333 47899999997632 11 11
Q ss_pred CCCCeeEEEeccc-c-cccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC----hHHHHHHHhh
Q 017369 162 DDAPFDICSCQFA-M-HYSWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKLRE 218 (372)
Q Consensus 162 ~~~~fD~V~~~~~-l-~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~----~~~~~~~l~~ 218 (372)
..++||+|++.-- + .--+.-..+...++..+.++|+|||.+++.+-. .+.+.+.+.+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 2468999999521 0 001122357788999999999999998766533 3444554443
No 176
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=1.6e-07 Score=81.49 Aligned_cols=111 Identities=8% Similarity=-0.085 Sum_probs=77.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||++||+|.++.+++..+...|+++|.++.+++.+++++.. .++..++.++++|+.+.- .......
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~--------~~~~~~~~~~~~D~~~~l-~~~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL--------LKSGEQAEVVRNSALRAL-KFLAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCcccEEEEehhHHHHH-HHhhccC
Confidence 5789999999999999999988877899999999999999998764 233346889999985431 1000012
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD 208 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~ 208 (372)
..||+|+..--... .....++..+. ..|+++|.+++..+.
T Consensus 120 ~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 120 TFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 24788887543322 11233344443 478999999887654
No 177
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.71 E-value=9.8e-08 Score=81.76 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=73.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+|||||||+|..++.++.. +...|+..|..+ .++.++.+....+ .....++.+...|-.+....+.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~------~~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG------SLLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc------ccccccccCcEEEecCcccccc
Confidence 3457889999999999888877776 567899999999 8998888876421 0124467777766544211111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ...+||+|++.-+++.- .....+++.+.++|+|+|.+++..+
T Consensus 115 ~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 115 L-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp H-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred c-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 1 34689999999998753 6788999999999999998777654
No 178
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.71 E-value=8.2e-08 Score=91.57 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.|.+|||+.|=||+++...+..+..+|++||+|...|+.|++++.- +++ ..++.|+++|+.+.- ......
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L--------Ng~~~~~~~~i~~Dvf~~l-~~~~~~ 287 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL--------NGLDGDRHRFIVGDVFKWL-RKAERR 287 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh--------cCCCccceeeehhhHHHHH-HHHHhc
Confidence 3899999999999999999888888999999999999999999874 333 245899999997632 111113
Q ss_pred CCCeeEEEecc-----cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQF-----AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..+||+|++.- .=...|.-..+...++..+.++|+|||.+++.+-
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 45999999853 1111134456788999999999999999987763
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.69 E-value=1.8e-07 Score=77.05 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=91.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
.+........+.-|||+|.|||-++..+++.+. ..++.+|.|++.+....+.+. .++++.+|+.
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------------~~~ii~gda~ 104 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------------GVNIINGDAF 104 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------Cccccccchh
Confidence 344445667788999999999999999998644 469999999999999998886 3668999998
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...-....+..||.|+|..-+-.+ +.....++|+.+...|.+||.++--+
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 76621112256789999998876665 45667889999999999999987544
No 180
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.69 E-value=9e-08 Score=83.03 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+.+|||.|.|-|..++..++.+..+|+-++.++..++.|.-+-=.. .-....++++.+|+.+.-- .+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr-------~l~~~~i~iilGD~~e~V~--~~- 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR-------ELFEIAIKIILGDAYEVVK--DF- 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc-------cccccccEEecccHHHHHh--cC-
Confidence 4569999999999999999999888889999999999999886542110 1122368999999976421 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++.+||+|+-.--=.- ...+--...+.++++++|||||.++--+.++
T Consensus 202 ~D~sfDaIiHDPPRfS-~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 202 DDESFDAIIHDPPRFS-LAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CccccceEeeCCCccc-hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 6789999986421000 0022345689999999999999997555433
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=2.5e-07 Score=84.29 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+++..++......++.+|||+|||+|.++..++.... .|+++|+++.+++.++.+... ..++.++++|
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D 83 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGD 83 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECc
Confidence 4556666666667889999999999999999887654 799999999999999887642 3468999999
Q ss_pred CcccccccccCCCCCee---EEEeccccc
Q 017369 151 CYEVHLDKVLADDAPFD---ICSCQFAMH 176 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD---~V~~~~~l~ 176 (372)
+.+.++. .+| +|+++...+
T Consensus 84 ~~~~~~~-------~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 84 ALKVDLP-------DFPKQLKVVSNLPYN 105 (253)
T ss_pred hhcCChh-------HcCCcceEEEcCChh
Confidence 9887652 355 777665543
No 182
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.68 E-value=2.6e-07 Score=90.84 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=78.2
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...++.+|||+|||+|.++..++.. ..+|+|+|+++.|++.|++++.. .++ .+++++++|+.+.. ...
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~--------~~~-~nv~~~~~d~~~~l-~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAEL--------NGI-ANVEFLAGTLETVL-PKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHH--------hCC-CceEEEeCCHHHHH-HHH
Confidence 34456789999999999999998764 45899999999999999998763 222 37999999986531 110
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
...+.+||+|++.-.-.-+ ...+++.+. .++|++.++++. ++..+.
T Consensus 357 ~~~~~~~D~vi~dPPr~G~------~~~~l~~l~-~l~~~~ivyvsc-~p~tla 402 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC------AAEVLRTII-ELKPERIVYVSC-NPATLA 402 (431)
T ss_pred HhcCCCCCEEEECcCCCCC------CHHHHHHHH-hcCCCEEEEEcC-CHHHHH
Confidence 0024579999875432111 234555544 388988777765 344443
No 183
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.66 E-value=2.7e-07 Score=88.77 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.++.+|||+|||+|.++..++... ..|+|+|+++.+++.|+++... .++ .++.|+++|+.+.... .
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~--------~~~-~~~~~~~~d~~~~~~~----~ 297 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM--------LGL-DNLSFAALDSAKFATA----Q 297 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHHHHh----c
Confidence 356799999999999999888644 5899999999999999998864 222 2799999999654311 1
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
...||+|++.---..+ ...+++.+. .++|++.++++. ++..+...+.
T Consensus 298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~ 344 (374)
T TIGR02085 298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDIA 344 (374)
T ss_pred CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHH
Confidence 2469999886542221 224444444 478988887776 4444444443
No 184
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.64 E-value=3.7e-07 Score=79.07 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=101.3
Q ss_pred chhhhHHHHHHHHHHhC-CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 66 LKKLNNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 66 ~~~~~~~~k~~l~~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
-+....|++........ ....++|||||=+......- .+.-.|+.||+.+. .-
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~------------------------~~ 85 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ------------------------HP 85 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC------------------------CC
Confidence 35566776666543321 12479999999755433321 22225999999761 12
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcE-----EEEEeCChHHHHHHHhhh
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPDANVIIKKLREV 219 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~-----li~~~~~~~~~~~~l~~~ 219 (372)
.+.+.|+.+.|++.. +.+.||+|+++.+|.|+. +....-.+++.+++.|+|+|. +++.+|.+- +.+
T Consensus 86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-v~N----- 156 (219)
T PF11968_consen 86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-VTN----- 156 (219)
T ss_pred CceeeccccCCCCCC--cccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-hhc-----
Confidence 347788888776422 457999999999999974 457788999999999999999 999988873 110
Q ss_pred cCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 220 EGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 220 ~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
+ .+.+.+.|..+++..||..+..+
T Consensus 157 ---------------------------------------S-----Ry~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 157 ---------------------------------------S-----RYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred ---------------------------------------c-----cccCHHHHHHHHHhCCcEEEEEE
Confidence 0 15566789999999999998775
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.62 E-value=2.6e-07 Score=84.05 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=85.1
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.++.+..--.+..|||+|||+|.++...+.++..+|++++.| +|.+.|++.... +.+..++.++.+-+++.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~--------N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVAS--------NNLADRITVIPGKIEDI 238 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhc--------CCccceEEEccCccccc
Confidence 344433333678999999999988888777888899999976 499999998875 45567899999999888
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+ +++.|+|++-- +-|++-++.-++..+ .+++.|+|.|.++-|+
T Consensus 239 eL------PEk~DviISEP-MG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 239 EL------PEKVDVIISEP-MGYMLVNERMLESYL-HARKWLKPNGKMFPTV 282 (517)
T ss_pred cC------chhccEEEecc-chhhhhhHHHHHHHH-HHHhhcCCCCcccCcc
Confidence 76 47899998743 334433443333333 4569999999988655
No 186
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.60 E-value=1.5e-07 Score=81.14 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
++.+|||+.||+|.++.+.+.++..+|+.||.++..+...+++++.. +...++..+..|+...-... ....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l--------~~~~~~~v~~~d~~~~l~~~-~~~~ 112 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL--------GLEDKIRVIKGDAFKFLLKL-AKKG 112 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH--------T-GGGEEEEESSHHHHHHHH-HHCT
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh--------CCCcceeeeccCHHHHHHhh-cccC
Confidence 68999999999999999999999999999999999999999998742 22346888999865422111 0035
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHH--HhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~--~~LkpgG~li~~~~~~ 209 (372)
.+||+|++.--...- .....++..+. ..|+++|.+++.....
T Consensus 113 ~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp S-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 789999987554321 11366777776 7899999999887544
No 187
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.57 E-value=4e-07 Score=79.34 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=71.1
Q ss_pred CCCCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..++.+|||+.||-|.+++.++. .....|+++|++|.+++.++++... +++...+..+++|+.++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l--------Nkv~~~i~~~~~D~~~~~----- 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL--------NKVENRIEVINGDAREFL----- 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH--------TT-TTTEEEEES-GGG-------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH--------cCCCCeEEEEcCCHHHhc-----
Confidence 57899999999999999999987 3555799999999999999998874 566778999999998765
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
+.+.||.|++..--. ...+|..+.+++++||.+
T Consensus 166 -~~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 166 -PEGKFDRVIMNLPES--------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEE
T ss_pred -CccccCEEEECChHH--------HHHHHHHHHHHhcCCcEE
Confidence 357899998865322 225778889999999876
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.55 E-value=6.7e-07 Score=80.59 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+..+|||||+++|.-+..++.. ..++++.+|++++..+.|++.+.. .++..+++++.+|+.+.- ....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~--------ag~~~~I~~~~G~a~e~L-~~l~ 148 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK--------AGVAHKIDFREGPALPVL-DQMI 148 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH--------CCCCCceEEEeccHHHHH-HHHH
Confidence 35679999999999888877654 346899999999999999999875 566778999999987631 1110
Q ss_pred C---CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 A---DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ..++||+|+.... .......++.+.++|+|||.+++.
T Consensus 149 ~~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 0 1368999987643 345667888889999999998864
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.9e-07 Score=76.84 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=79.5
Q ss_pred CCCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC-CcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~ 157 (372)
+.|+.+.||+|.|+|.++..+.. .....++|||.-++.++.+++++...-.+......+ ..++.++++|.....-
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~- 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA- 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-
Confidence 68999999999999998877664 223345999999999999999886421100000111 2367888999987554
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..+||.|.|..+.. +..+++...|+|||.+++-.
T Consensus 159 ----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 ----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEee
Confidence 568999999875432 45677888999999988654
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.49 E-value=7.3e-07 Score=83.83 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=75.0
Q ss_pred hCCCCCEEEEecCCccccHHHHHH--------cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++.+|||.+||+|.++..+.. .....++|+|+++.++..|+-++.-.+.. .....+..+|..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-------~~~~~i~~~d~l 115 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-------NSNINIIQGDSL 115 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-------CBGCEEEES-TT
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-------cccccccccccc
Confidence 556777999999999999888765 24557999999999999998765321110 112457888876
Q ss_pred ccccccccCCCCCeeEEEeccccccc-C----------------CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..+... ....||+|+++--+-.. + .....--.++..+.+.|++||++.+.+|+.
T Consensus 116 ~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 116 ENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp TSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 544310 14689999997422111 0 001122358899999999999988888754
No 191
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.49 E-value=1.4e-06 Score=77.37 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
+.+++....+++.+.|||+|.|||.++..+++.+. .|+++++++.|+.+..++..+. ......+++++|..
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gt--------p~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGT--------PKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCC--------CccceeeEEecccc
Confidence 34455566778999999999999999999987654 8999999999999999998752 22467899999998
Q ss_pred ccccccccCCCCCeeEEEecc
Q 017369 153 EVHLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~ 173 (372)
..++ ..||.++++.
T Consensus 118 K~d~-------P~fd~cVsNl 131 (315)
T KOG0820|consen 118 KTDL-------PRFDGCVSNL 131 (315)
T ss_pred cCCC-------cccceeeccC
Confidence 7665 5799999854
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.4e-06 Score=79.91 Aligned_cols=131 Identities=16% Similarity=0.121 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEE
Q 017369 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (372)
Q Consensus 68 ~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 146 (372)
.++.|+.......+..+ .+||-||.|.|+.+.++++.. ..+++.|||++..++.|++.+..... .....++++
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~-----~~~dpRv~i 134 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG-----GADDPRVEI 134 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc-----ccCCCceEE
Confidence 34455544444444445 699999999999999999875 56799999999999999999874321 111478999
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
+..|..+.--. ...+||+|++...=.--....---..+++.+.+.|+++|.++...-+
T Consensus 135 ~i~Dg~~~v~~----~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 135 IIDDGVEFLRD----CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EeccHHHHHHh----CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 99998764321 23489999986532200000001258999999999999999987543
No 193
>PLN02823 spermine synthase
Probab=98.47 E-value=1.4e-06 Score=82.21 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
...+||.||+|.|..+..+++. ...+++.||+++.+++.|++.+..... .--..+++++.+|+...--. .
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~-----~~~dprv~v~~~Da~~~L~~----~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE-----AFCDKRLELIINDARAELEK----R 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc-----cccCCceEEEEChhHHHHhh----C
Confidence 4578999999999999888875 356799999999999999998753110 01146899999999764211 3
Q ss_pred CCCeeEEEecccccccCCCH--HHHHHHHH-HHHHhcCCCcEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~--~~~~~~l~-~i~~~LkpgG~li~~~ 206 (372)
.++||+|++...-...-... ---..+++ .+.+.|+|||++++..
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 46899999874211000000 01246787 8999999999988754
No 194
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.46 E-value=5.9e-07 Score=78.71 Aligned_cols=128 Identities=21% Similarity=0.213 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
..+..++....+.++...+|||||.|......+. .+....+|||+.+...+.|...................++.+..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 4456677777788999999999999998766554 466679999999998887765433111000000011346788899
Q ss_pred cCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
|+.+.++...+ -...|+|+++.... + ++....|.++...||+|-++|.+
T Consensus 109 dfl~~~~~~~~--~s~AdvVf~Nn~~F---~--~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDI--WSDADVVFVNNTCF---D--PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHH--GHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhh--hcCCCEEEEecccc---C--HHHHHHHHHHHhcCCCCCEEEEC
Confidence 98765432111 14589999987653 2 56777788888999998877643
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=1.3e-06 Score=85.96 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=82.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
.+.++.+|||+|||.|+=+..++.. +.+.++++|+++.-++.++++++..+ + .++.+.+.|...+.-
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G--------~-~nv~v~~~D~~~~~~-- 178 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG--------V-SNVALTHFDGRVFGA-- 178 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC--------C-CeEEEEeCchhhhhh--
Confidence 4578999999999999988888764 34689999999999999999887532 2 357788888765431
Q ss_pred ccCCCCCeeEEEe----cc--cccccCC-----CHH-------HHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 159 VLADDAPFDICSC----QF--AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 159 ~~~~~~~fD~V~~----~~--~l~~~~~-----~~~-------~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ..+.||.|++ +. ++..-.+ +.+ -..++|.++.+.|||||+++.+|-
T Consensus 179 ~--~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 179 A--LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred h--chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 1 2357999994 32 2211000 111 237889999999999999988774
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.45 E-value=3.8e-07 Score=78.72 Aligned_cols=115 Identities=25% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc----
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---- 157 (372)
++.+|||+||++|+++..++... ...|+|+|+.+. .. ...+.++++|+.+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-----------~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-----------LQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS------------TTEEBTTGGGEEEEHSHHGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-----------ccceeeeecccchhhHHHhhh
Confidence 35899999999999999998876 567999999874 00 12466667776543211
Q ss_pred cccC-CCCCeeEEEeccccccc----CC---CHHHHHHHHHHHHHhcCCCcEEEEEeCCh---HHHHHHHhh
Q 017369 158 KVLA-DDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLRE 218 (372)
Q Consensus 158 ~~~~-~~~~fD~V~~~~~l~~~----~~---~~~~~~~~l~~i~~~LkpgG~li~~~~~~---~~~~~~l~~ 218 (372)
.... ....||+|+|..+.... .+ ...-....+.-+...|+|||.+++.+-.. ..++..+..
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 1110 12689999998732211 00 11234455556667899999988876332 345554443
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.45 E-value=5.9e-07 Score=82.84 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
++.++..+.+.++..+||.+||.|+++..++... .+.|+|+|.++.|++.|++++.. ..++.++++|
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----------~~ri~~i~~~ 76 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----------FGRFTLVHGN 76 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------CCcEEEEeCC
Confidence 4556666667788999999999999999999864 46899999999999999988752 3469999999
Q ss_pred CcccccccccCC-CCCeeEEEecccc
Q 017369 151 CYEVHLDKVLAD-DAPFDICSCQFAM 175 (372)
Q Consensus 151 ~~~~~~~~~~~~-~~~fD~V~~~~~l 175 (372)
+.++... ... -.++|.|++....
T Consensus 77 f~~l~~~--l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 77 FSNLKEV--LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHH--HHcCCCccCEEEECCCc
Confidence 9875421 101 1279999987644
No 198
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.8e-07 Score=75.09 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.|.+++|+|||.|.++......+...|+|+||++++++.+.++.+.. ..++.+.++|+.++.+ .
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf----------EvqidlLqcdildle~-----~ 111 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF----------EVQIDLLQCDILDLEL-----K 111 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh----------hhhhheeeeeccchhc-----c
Confidence 368899999999998776665556667999999999999999887642 3357889999987766 5
Q ss_pred CCCeeEEEeccc
Q 017369 163 DAPFDICSCQFA 174 (372)
Q Consensus 163 ~~~fD~V~~~~~ 174 (372)
.+.||.++.+--
T Consensus 112 ~g~fDtaviNpp 123 (185)
T KOG3420|consen 112 GGIFDTAVINPP 123 (185)
T ss_pred CCeEeeEEecCC
Confidence 689999998753
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.38 E-value=6.4e-06 Score=66.60 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=68.0
Q ss_pred CCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
++.+|||+|||.|. ++..+.+. ...|+++|+++..++.|++.. +.++++|+.+..+. .
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~----~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE----I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----H
Confidence 46789999999996 66666554 448999999999999887653 57899999876542 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
-..+|+|.+.. ...++...+.++++.+. .-+++..-..
T Consensus 75 y~~a~liysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 75 YKNAKLIYSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred HhcCCEEEEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 36799997543 33566667777777654 3455554333
No 200
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.38 E-value=5.2e-07 Score=85.51 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=89.9
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+.++..++|+|||-|.............++|+|.++..+..+...... ..+.....+..+|+...++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~--------~~l~~k~~~~~~~~~~~~f---- 174 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK--------AYLDNKCNFVVADFGKMPF---- 174 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH--------HHhhhhcceehhhhhcCCC----
Confidence 4567889999999999999888777777899999999888877665543 2233455668889888888
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+++.||.+.+.-+..|. .+...+++++.++++|||+++..
T Consensus 175 -edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 -EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence 78999999999999998 77889999999999999998764
No 201
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.38 E-value=2.7e-06 Score=84.93 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=87.2
Q ss_pred CCCEEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..+||||||.|.++..++...+. .++|+|++...+..|.++... .+ ..|+.+++.|+..+. ..+ +
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~--------~~-l~N~~~~~~~~~~~~--~~~-~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE--------QN-ITNFLLFPNNLDLIL--NDL-P 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------cC-CCeEEEEcCCHHHHH--Hhc-C
Confidence 4678999999999999999887554 599999999988888777653 22 236788888764322 112 6
Q ss_pred CCCeeEEEecccccccC----CCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 163 DAPFDICSCQFAMHYSW----STEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~----~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
++++|.|+.+|.=-|-- ...---..+++.+++.|+|||.+.+.|-+.+.....
T Consensus 415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~ 471 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEA 471 (506)
T ss_pred cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 78899999887544320 000012578999999999999999998877665443
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.37 E-value=5.6e-06 Score=86.07 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=84.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-------------------------------------------CCCEEEEEeCChHH
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS 119 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~~ 119 (372)
.++..++|.+||+|.++++.+.. ....++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999887541 01258999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcC--
Q 017369 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR-- 197 (372)
Q Consensus 120 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-- 197 (372)
++.|+.++.. .++...+.+.++|+.+++... ..+.||+|+++--..--.....+...+...+.+.|+
T Consensus 269 v~~A~~N~~~--------~g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNARR--------AGVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHH--------cCCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 9999999874 455567899999998865410 235799999985432222334455555555555554
Q ss_pred -CCcEEEEEeCChH
Q 017369 198 -PGGTFIGTMPDAN 210 (372)
Q Consensus 198 -pgG~li~~~~~~~ 210 (372)
+|+.+++.+++..
T Consensus 338 ~~g~~~~llt~~~~ 351 (702)
T PRK11783 338 FGGWNAALFSSSPE 351 (702)
T ss_pred CCCCeEEEEeCCHH
Confidence 8988888887764
No 203
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.36 E-value=1.7e-06 Score=80.12 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
-...+|+|.|.|..+..++. ...++-|+++....+..++..+. +.++.+-+|+... . .
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------------~gV~~v~gdmfq~-~-------P 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------------PGVEHVAGDMFQD-T-------P 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------------CCcceeccccccc-C-------C
Confidence 37899999999999999988 55579999999988887776652 1377788888754 3 3
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+-|+|++.+++||. +.++..++|+++...|+|||.+++.-
T Consensus 236 ~~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 236 KGDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred CcCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 45699999999997 66899999999999999999987643
No 204
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.33 E-value=4.4e-07 Score=87.55 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=71.3
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEE--EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYV--GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.++||+|||.|.++..++..+...+. --|..+..++.|.+|.- . .-+-..-...+|+ ++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv------------p--a~~~~~~s~rLPf-----p~ 179 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV------------P--AMIGVLGSQRLPF-----PS 179 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc------------c--hhhhhhccccccC-----Cc
Confidence 46899999999999999887653322 23555667777766632 1 1111222345788 88
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.||+|-|+.++... .. +-..+|-++-|+|+|||+|+.+.|-.
T Consensus 180 ~~fDmvHcsrc~i~W-~~--~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPW-HP--NDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cchhhhhcccccccc-hh--cccceeehhhhhhccCceEEecCCcc
Confidence 999999999877542 22 22458899999999999999988743
No 205
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.5e-05 Score=75.20 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHcCC---------------------------------C-------EEEEEeCChH
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G-------YYVGIDIAEG 118 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------~-------~v~gvD~s~~ 118 (372)
...-.++..++|.-||+|.++++.+.... . .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 33456678999999999999988765321 1 3779999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH----HHHHHHHHHH
Q 017369 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSA 194 (372)
Q Consensus 119 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l~~i~~ 194 (372)
+++.|+.++.. .++...+.|.++|+..+.- +.+.+|+|+|+-----=+.+... ...+.+.+.+
T Consensus 266 ~i~~Ak~NA~~--------AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 266 HIEGAKANARA--------AGVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred HHHHHHHHHHh--------cCCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 99999999875 6778889999999988764 23789999998521110122222 2345556667
Q ss_pred hcCCCcEEEEEeCChHHHHHHHhh
Q 017369 195 LLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 195 ~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
.++-.+.+++++...-.....++.
T Consensus 333 ~~~~ws~~v~tt~e~~~~~~~~ra 356 (381)
T COG0116 333 LLAGWSRYVFTTSEDLLFCLGLRA 356 (381)
T ss_pred HhcCCceEEEEccHHHHHHHhhhh
Confidence 777778888887665444444444
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=98.29 E-value=7e-06 Score=74.47 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=75.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+...+||=+|.|.|+.+.++++... +|+.|||++.+++.|++.+..... .--.++++++.. +.+ . .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-----~~~DpRv~l~~~-~~~--~-----~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-----VKNNKNFTHAKQ-LLD--L-----D 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-----hhcCCCEEEeeh-hhh--c-----c
Confidence 4568999999999999999998764 999999999999999996653211 112446666641 111 0 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++||+|++.... ...+.+.+.++|+|||.++....
T Consensus 137 ~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 137 IKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECCC
Confidence 3689999987431 24678999999999999998553
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.28 E-value=8.4e-06 Score=78.40 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+|||++||+|..+..++.. +...|+++|+++.+++.++++++. +++ .++.+.++|+..+.. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~--------N~~-~~~~v~~~Da~~~l~-----~~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL--------NGL-ENEKVFNKDANALLH-----EE 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CceEEEhhhHHHHHh-----hc
Confidence 468999999999999998764 445899999999999999998863 222 246688999865421 13
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
+.||+|++.-- - + ...++..+.+.+++||++.+|.-|...+
T Consensus 124 ~~fD~V~lDP~--G---s---~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 124 RKFDVVDIDPF--G---S---PAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred CCCCEEEECCC--C---C---cHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 57999987531 1 1 3467788778889999999997665544
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.9e-06 Score=74.39 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.+..++....+.++..|||||+|.|.++..+++... .|+++|+++.+++..+++... ..+++++.+|
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~-----------~~n~~vi~~D 84 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP-----------YDNLTVINGD 84 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc-----------ccceEEEeCc
Confidence 4466677777778899999999999999999987655 799999999999999988742 4579999999
Q ss_pred CcccccccccCCCCCeeEEEeccc
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFA 174 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~ 174 (372)
+...++... ..++.|+++.-
T Consensus 85 aLk~d~~~l----~~~~~vVaNlP 104 (259)
T COG0030 85 ALKFDFPSL----AQPYKVVANLP 104 (259)
T ss_pred hhcCcchhh----cCCCEEEEcCC
Confidence 998887311 16788887644
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.25 E-value=2.2e-06 Score=77.62 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=79.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+...+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+..... ..-..+++++.+|+...--.
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~-----~~~d~r~~i~~~Dg~~~l~~--- 145 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE-----GLDDPRVRIIIGDGRKFLKE--- 145 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-----TGGSTTEEEEESTHHHHHHT---
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-----ccCCCceEEEEhhhHHHHHh---
Confidence 3467899999999999999988765 56899999999999999987652110 01245899999998753321
Q ss_pred CCCC-CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ +||+|+....-.......---..+++.+.+.|+|||.++...
T Consensus 146 -~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 234 899999854321100000012579999999999999999765
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.25 E-value=1.6e-05 Score=65.62 Aligned_cols=101 Identities=24% Similarity=0.423 Sum_probs=70.1
Q ss_pred EEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcc--cccccccCC
Q 017369 88 VLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD 162 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~--~~~~~~~~~ 162 (372)
++|+|||+|... .+..... ..++|+|+++.++..++..... .... +.+..+|... .++ .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-----~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----------AGLGLVDFVVADALGGVLPF-----E 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----------cCCCceEEEEeccccCCCCC-----C
Confidence 999999999865 2222222 3789999999999985554421 0111 5778888765 454 3
Q ss_pred C-CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
. ..||++ +.....+... ....+.++.+.|+|+|.+++.....
T Consensus 116 ~~~~~d~~-~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 116 DSASFDLV-ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCCceeEE-eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 3 489999 5554444322 6789999999999999998877554
No 211
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.23 E-value=1.6e-05 Score=67.91 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
-.+.++||+-+|+|.+..+.+.++...++.||.+...+...+++.+.. ++..++.++..|+... +.. ...
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l--------~~~~~~~~~~~da~~~-L~~-~~~ 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL--------GLEGEARVLRNDALRA-LKQ-LGT 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------CCccceEEEeecHHHH-HHh-cCC
Confidence 368999999999999999999999999999999999999999998642 3345788888888732 111 102
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHH--HHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~--i~~~LkpgG~li~~~~~~ 209 (372)
.++||+|+..--.+.- .-+....+.. -...|+|+|.+++.....
T Consensus 112 ~~~FDlVflDPPy~~~---l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 112 REPFDLVFLDPPYAKG---LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCcccEEEeCCCCccc---hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2359999987655421 1112233333 456799999999887544
No 212
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.21 E-value=1.2e-05 Score=77.02 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=71.6
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--- 161 (372)
+.+|||++||+|.++..++.. ..+|+|+|+++.+++.|+++... .++ .++.++++|+.+.- .....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~--------~~~-~~v~~~~~d~~~~l-~~~~~~~~ 275 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAA--------NGI-DNVQIIRMSAEEFT-QAMNGVRE 275 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHH--------hCC-CcEEEEECCHHHHH-HHHhhccc
Confidence 357999999999999977654 55899999999999999998763 222 27999999986631 11000
Q ss_pred ---------CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHH
Q 017369 162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (372)
Q Consensus 162 ---------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l 216 (372)
....||+|+..---.-+ ...+++.+.+ |++.++++.. +..+...+
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC~-p~tlarDl 329 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISCN-PETLCENL 329 (362)
T ss_pred ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEeC-HHHHHHHH
Confidence 01258999875431111 1234444433 6777777663 34444433
No 213
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=1.7e-05 Score=76.43 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=91.2
Q ss_pred hCCCCC-EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+..+.. ++|-+|||.-.++..+.+.+...|+.+|+|+..++....+... -..-..+...|+..+.+
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~----------~~~~~~~~~~d~~~l~f--- 110 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK----------ERPEMQMVEMDMDQLVF--- 110 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc----------CCcceEEEEecchhccC---
Confidence 445555 9999999999999888888887899999999999888776531 14458889999999988
Q ss_pred cCCCCCeeEEEecccccccCCCHHHH------HHHHHHHHHhcCCCcEEE-EEe
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFI-GTM 206 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~------~~~l~~i~~~LkpgG~li-~~~ 206 (372)
++++||+|+.-..++++++++... ...+.+++++|++||+++ ++.
T Consensus 111 --edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 111 --EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred --CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 789999999999999887765543 467899999999999865 444
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.18 E-value=2.9e-06 Score=71.19 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=53.5
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
..|+|+.||.|+.+..+++. ..+|+++|+++..++.|+.+++-+ ++..++.++++|+.+..-. ......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vY--------Gv~~~I~~i~gD~~~~~~~--~~~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVY--------GVADNIDFICGDFFELLKR--LKSNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHT--------T-GGGEEEEES-HHHHGGG--B-----
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEeCCHHHHHhh--cccccc
Confidence 36999999999999999876 458999999999999999998753 4456899999999875321 101122
Q ss_pred eeEEEec
Q 017369 166 FDICSCQ 172 (372)
Q Consensus 166 fD~V~~~ 172 (372)
+|+|+++
T Consensus 70 ~D~vFlS 76 (163)
T PF09445_consen 70 FDVVFLS 76 (163)
T ss_dssp -SEEEE-
T ss_pred ccEEEEC
Confidence 8999985
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=1.7e-05 Score=74.21 Aligned_cols=104 Identities=24% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+|.+|||+-||-|.+++.++..+...|+++|++|.+++.+++++.- +++...+..+++|+.+...
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~----- 252 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP----- 252 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----
Confidence 356999999999999999999887766699999999999999999874 4556669999999998764
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-+.+|-|++...- ....++..+.+.+++||.+-.-.
T Consensus 253 ~~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 253 ELGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEe
Confidence 23789999876542 23467888888999999876544
No 216
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=8.5e-05 Score=62.41 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+||||||+|..+..+... +...+.++|+++.+++..++-+..+ ..++..++.|+..--
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----------~~~~~~V~tdl~~~l------ 106 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----------RVHIDVVRTDLLSGL------ 106 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----------CCccceeehhHHhhh------
Confidence 3678999999999988887764 3445889999999999877766521 224677888876422
Q ss_pred CCCCeeEEEeccc---------------cccc--CCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHh
Q 017369 162 DDAPFDICSCQFA---------------MHYS--WSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~---------------l~~~--~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~ 217 (372)
..++.|+++.+-- +-|. -+..+-..+++..+-.+|.|.|.|++.+. .+..++..++
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 2378888877531 1111 11222356778888899999999887654 3455555443
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2.7e-05 Score=67.45 Aligned_cols=117 Identities=26% Similarity=0.304 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.++.+|+|||+-.|+++..+.+.. .+.|+|+|+-| -....++.++++|+...+..+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p--------------------~~~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP--------------------MKPIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc--------------------cccCCCceEEeeeccCccHHHH
Confidence 5688999999999999999887742 23499999976 1123459999999987553211
Q ss_pred c---CCCCCeeEEEecccc--------cccCCCHHHHHHHHHHHHHhcCCCcEEEEEe---CChHHHHHHHhhh
Q 017369 160 L---ADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREV 219 (372)
Q Consensus 160 ~---~~~~~fD~V~~~~~l--------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~---~~~~~~~~~l~~~ 219 (372)
+ ....++|+|++..+- .|. ....-...++.-+..+|+|||.|++.+ .+.+.++..++..
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 1 134568999986532 222 122234566677778999999998765 4556677766653
No 218
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.14 E-value=1.8e-05 Score=75.59 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=70.9
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc----c-
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV----L- 160 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~- 160 (372)
.+|||+|||+|.++..+... ...|+|+|++++|++.|++++.. .++ .++.++++|+.+..-... +
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~--------~~~-~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAA--------NNI-DNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEEcCHHHHHHHHhhccccc
Confidence 47999999999999977654 45899999999999999998863 222 268999999876321000 0
Q ss_pred -CC-----CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 161 -AD-----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 161 -~~-----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
.. ...||+|+..--=.-+ ...+++.+. +|++.++++. ++..+...+.
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR~G~------~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~ 321 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPRAGL------DPDTCKLVQ---AYERILYISC-NPETLKANLE 321 (353)
T ss_pred cccccccccCCCCEEEECCCCCCC------cHHHHHHHH---cCCcEEEEEc-CHHHHHHHHH
Confidence 00 1237998875431110 123444443 3777777766 3344444333
No 219
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.14 E-value=1.2e-05 Score=76.99 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=80.5
Q ss_pred CCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+.+|||+.||+|..++.++.. +..+|+++|+++.+++.++++++.. +. .++.++++|+...... .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N--------~~-~~~~v~~~Da~~~l~~----~ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN--------SV-ENIEVPNEDAANVLRY----R 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh--------CC-CcEEEEchhHHHHHHH----h
Confidence 368999999999999999876 5578999999999999999988632 11 2578899998765321 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
...||+|...- . . .+..++..+.+.+++||.+.+|.-|..
T Consensus 112 ~~~fDvIdlDP-f-G------s~~~fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 112 NRKFHVIDIDP-F-G------TPAPFVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred CCCCCEEEeCC-C-C------CcHHHHHHHHHhcccCCEEEEEecccH
Confidence 35799998754 2 1 234788999999999999999854443
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.13 E-value=3.2e-05 Score=67.49 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=74.3
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
...+.++.+||-+|..+|.....+..- ..+.|++|+.|+......-.-.++ ..|+--+..|+.....
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----------R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----------RPNIIPILEDARHPEK 136 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----------STTEEEEES-TTSGGG
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----------CCceeeeeccCCChHH
Confidence 356779999999999999988887763 467899999999654443332221 2368889999986432
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-..+ -+.+|+|++.-+-. ++.+-++.|+...||+||.+++.+
T Consensus 137 Y~~l--v~~VDvI~~DVaQp------~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 137 YRML--VEMVDVIFQDVAQP------DQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GTTT--S--EEEEEEE-SST------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc--cccccEEEecCCCh------HHHHHHHHHHHhhccCCcEEEEEE
Confidence 2222 35899999876632 567888999999999999999876
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.1e-05 Score=67.17 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+..++..+.+.||.+|||-|.|+|.++..+++. +.++++-+|+.+.-.+.|++.++. .+++.++.+.+-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~--------hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE--------HGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH--------hCCCcceEEEEee
Confidence 344566678899999999999999999888774 567999999999888899988875 6678899999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCChHHHHH
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDANVIIK 214 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~~~~~~~ 214 (372)
+....+.. ....+|.|+...--- -.++-.++.+||.+| +|+.-.|+.+.+-.
T Consensus 166 Vc~~GF~~---ks~~aDaVFLDlPaP---------w~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 166 VCGSGFLI---KSLKADAVFLDLPAP---------WEAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred cccCCccc---cccccceEEEcCCCh---------hhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 98766531 256899997654333 345666677888876 56666677665543
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.08 E-value=3.6e-05 Score=77.64 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCEEEEecCCccccHHHHHHcC---------CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
...+|||.|||+|.++..++... ...++|+|+++.++..|+.++...+ ...+.+.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---------~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---------LLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---------CCCceeeecccccc
Confidence 34699999999999998876531 1358999999999999998876321 11234455554322
Q ss_pred ccccccCCCCCeeEEEecc
Q 017369 155 HLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~ 173 (372)
.+.......+.||+|+++-
T Consensus 102 ~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 102 VLLNIESYLDLFDIVITNP 120 (524)
T ss_pred cccccccccCcccEEEeCC
Confidence 1110000135799999974
No 223
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.08 E-value=6.3e-05 Score=65.98 Aligned_cols=108 Identities=17% Similarity=0.081 Sum_probs=73.1
Q ss_pred EEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 88 VLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
|.|+||-.|.+...++..+.. +++++|+++.-++.|++.... .++..++.+..+|..+. +. +.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~--------~~l~~~i~~rlgdGL~~-l~----~~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK--------YGLEDRIEVRLGDGLEV-LK----PGEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH--------TT-TTTEEEEE-SGGGG-------GGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCcccEEEEECCcccc-cC----CCCCC
Confidence 689999999999999987665 499999999999999999875 45567899999997642 21 23347
Q ss_pred eEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHH
Q 017369 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (372)
Q Consensus 167 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 214 (372)
|.|+...+=- .-...+|.+....++....|++.-.+....+.
T Consensus 68 d~ivIAGMGG------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR 109 (205)
T PF04816_consen 68 DTIVIAGMGG------ELIIEILEAGPEKLSSAKRLILQPNTHAYELR 109 (205)
T ss_dssp -EEEEEEE-H------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHH
T ss_pred CEEEEecCCH------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHH
Confidence 8887665422 44678888888888776677776554443333
No 224
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.98 E-value=0.0001 Score=60.80 Aligned_cols=108 Identities=24% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCCCCEEEEecCCccccHHHHHH-----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
..+...|+|+|||.|.++..++. ....+|+|+|.++..++.|..+..... ..+..+..+..++..+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~- 95 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG------SDLEKRLSFIQGDIADES- 95 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc------chhhccchhhccchhhhc-
Confidence 35678999999999999888877 555689999999999999988876421 112234556665554332
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.....++++ ++|-. .+ --..+|+.+.+ |+-.+++.+|...
T Consensus 96 -----~~~~~~~~v---gLHaC-G~--Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 96 -----SSDPPDILV---GLHAC-GD--LSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred -----ccCCCeEEE---Eeecc-cc--hHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 235667776 44422 21 12345555544 6767777777763
No 225
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00014 Score=62.27 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.++++.+||=||..+|........- +.+.++||+.|+.+....-..+.+ ..|+--+.+|+....--
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKY 139 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHh
Confidence 346789999999999999988888774 456799999999877655544432 33577788898753211
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+ -+..|+|++.-+- +.+.+-+..|+..-||+||++++.+
T Consensus 140 ~~~--Ve~VDviy~DVAQ------p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 140 RHL--VEKVDVIYQDVAQ------PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred hhh--cccccEEEEecCC------chHHHHHHHHHHHhcccCCeEEEEE
Confidence 111 2569999876543 3567778899999999999887765
No 226
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.96 E-value=8.6e-05 Score=63.96 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCCCC-EEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGD-VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+.... +|+|+|+|.|--...++-. +..+++.+|....-+...+...... + -.+++++++.+++ ..
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--------~-L~nv~v~~~R~E~-~~--- 111 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--------G-LSNVEVINGRAEE-PE--- 111 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--------T--SSEEEEES-HHH-TT---
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--------C-CCCEEEEEeeecc-cc---
Confidence 33334 8999999999887777654 4457999999987665555444321 1 2369999999987 22
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CCh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDA 209 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~ 209 (372)
....||+|++-.+.. +..++.-+...|++||.+++-- ++.
T Consensus 112 --~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 112 --YRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp --TTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred --cCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 468999999876542 5578888999999999876543 443
No 227
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=7.1e-05 Score=65.38 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...++||||.=||.-++.++.. ..++|+++|+++...+.+.+..+. ++...+++++++++.+. +.+.+.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~--------agv~~KI~~i~g~a~es-Ld~l~~ 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL--------AGVDHKITFIEGPALES-LDELLA 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh--------ccccceeeeeecchhhh-HHHHHh
Confidence 5679999999999877777664 456899999999999999776653 56677899999988652 122211
Q ss_pred --CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 --DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.++||+++... ........+.++.+++|+||.+++.
T Consensus 144 ~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred cCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 358999997542 2244558889999999999999865
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.95 E-value=0.00043 Score=63.42 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECc
Q 017369 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (372)
Q Consensus 71 ~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D 150 (372)
+.++.++....+.++..|||+|+|.|.++..++... .+++++|+++.+++..++++.. ..+++++.+|
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D 84 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecc
Confidence 445566666667789999999999999999998876 6999999999999999988752 4579999999
Q ss_pred CcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC
Q 017369 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 198 (372)
+......... ......|+++.-. ++ -..++..+...-+.
T Consensus 85 ~l~~~~~~~~--~~~~~~vv~NlPy-~i------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 85 FLKWDLYDLL--KNQPLLVVGNLPY-NI------SSPILRKLLELYRF 123 (262)
T ss_dssp TTTSCGGGHC--SSSEEEEEEEETG-TG------HHHHHHHHHHHGGG
T ss_pred hhccccHHhh--cCCceEEEEEecc-cc------hHHHHHHHhhcccc
Confidence 9987763211 2355666665443 32 23455555554444
No 229
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.92 E-value=0.00018 Score=66.23 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...+|||+|||+|..+..+... ....++++|.|+.|++.++........ .....+ ..+......
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~----- 98 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL----- 98 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc-----
Confidence 4569999999999765544432 345699999999999999887663210 000101 111110000
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC---ChHHHHHHHhh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLRE 218 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~---~~~~~~~~l~~ 218 (372)
+....|+|++.++|.-+.+ .....+++++.+.+.+ .+|+..| .+...+..+++
T Consensus 99 ~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~ 154 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARD 154 (274)
T ss_pred cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHH
Confidence 1234499999999998744 6678888888888776 6666554 34444555444
No 230
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.86 E-value=8.2e-05 Score=71.04 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=67.0
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
+...++ .|||+.||.|.++..++. ...+|+|||+++++++.|++++... + ..+++|+++++.++...
T Consensus 193 l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N--------~-i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 193 LDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLN--------G-IDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp CTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHT--------T---SEEEEE--SHHCCCHHC
T ss_pred hhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHc--------C-CCcceEEEeeccchhHHHH
Confidence 333444 899999999999999865 4568999999999999999998742 2 34799998887653210
Q ss_pred c--------c-cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh
Q 017369 158 K--------V-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 158 ~--------~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
. . ......+|+|+..--=.-+ . ..+++.+.+ + ..++...-|+..+...+..
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~--~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~ 321 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVILDPPRAGL--D----EKVIELIKK---L-KRIVYVSCNPATLARDLKI 321 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---TT-S--C----HHHHHHHHH---S-SEEEEEES-HHHHHHHHHH
T ss_pred hhHHHHhhhhhhhhhcCCCEEEEcCCCCCc--h----HHHHHHHhc---C-CeEEEEECCHHHHHHHHHH
Confidence 0 0 0012368999764311111 0 123333332 2 2555555566666665543
No 231
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=6.2e-05 Score=73.35 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=79.7
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..+...++.+|||+-||.|.+++.++. ...+|+|+|+++++++.|+++++. +++. |+.|+.+++.+....
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~--------n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAA--------NGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHH--------cCCC-cEEEEeCCHHHHhhh
Confidence 333445778999999999999999874 566899999999999999999874 2333 599999999876542
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHH
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 215 (372)
.. ....+|.|+..--=--+ -..+++.+.+ ++|-..+++++ |+..+...
T Consensus 357 ~~--~~~~~d~VvvDPPR~G~------~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRD 404 (432)
T COG2265 357 WW--EGYKPDVVVVDPPRAGA------DREVLKQLAK-LKPKRIVYVSC-NPATLARD 404 (432)
T ss_pred cc--ccCCCCEEEECCCCCCC------CHHHHHHHHh-cCCCcEEEEeC-CHHHHHHH
Confidence 11 23578999875322111 1134444443 56666666665 44444443
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.83 E-value=0.00031 Score=64.05 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=66.7
Q ss_pred CEEEEecCCccccHHHHHHc--C-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 86 DVVLDLACGKGGDLIKWDKA--K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~--~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+|+=||||.=-++.-++.. + ...++++|+++++++.|++-.... .++..++.|+++|..+.+. .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~-----d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY-----D 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----G
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----c
Confidence 59999999987666655542 2 346899999999999999876521 2446679999999987654 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
-..||+|+......- +.+...++|.++.+.++||..+++-..++
T Consensus 190 l~~~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp ----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred cccCCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 368999987654431 34567899999999999999998775443
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00017 Score=68.94 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=81.1
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcC---CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
+.+.++.+|||++++.|+=+..++... ...|+++|+++.-++..++++++.+. . ++..++.|....+-
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--------~-nv~~~~~d~~~~~~ 222 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--------R-NVIVVNKDARRLAE 222 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--------C-ceEEEecccccccc
Confidence 456789999999999999887777642 23479999999999999998875332 2 46777777764432
Q ss_pred ccccCCCCCeeEEEecc------ccc------ccCCCH------HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQF------AMH------YSWSTE------ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~------~l~------~~~~~~------~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
. ....++||.|++.- +++ |-+... .-..++|..+.+.|||||.++.+|-
T Consensus 223 ~--~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 223 L--LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred c--ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 1 10223699998842 221 111111 1247889999999999999998774
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.81 E-value=0.00019 Score=66.93 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.++|||||++|+++..+++.+. .|++||..+ |-. .... ..++..+.+|.....-
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~---~L~~------------~~~V~h~~~d~fr~~p----- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ---SLMD------------TGQVEHLRADGFKFRP----- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH---hhhC------------CCCEEEEeccCcccCC-----
Confidence 36899999999999999999998766 999999654 211 1111 3468888888765431
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC--cEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg--G~li~~~ 206 (372)
+.+.+|+++|..+.. +..+.+-+.+.|..| ..+|+++
T Consensus 267 ~~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 267 PRKNVDWLVCDMVEK--------PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CCCCCCEEEEecccC--------HHHHHHHHHHHHhcCcccEEEEEE
Confidence 257899999987743 456667777777665 3455554
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.66 E-value=0.00029 Score=65.19 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=81.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.+.++..|||+++|.|+=+..++.. ..+.+++.|+++.-+...+.+..+.+ ..++.....|.......
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---------~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---------VFNVIVINADARKLDPK 151 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----------SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---------CceEEEEeecccccccc
Confidence 45678999999999999988777664 35789999999999999988887432 23577777887665211
Q ss_pred cccCCCCCeeEEEecc------cccccCC------C------HHHHHHHHHHHHHhc----CCCcEEEEEeC
Q 017369 158 KVLADDAPFDICSCQF------AMHYSWS------T------EARARRALANVSALL----RPGGTFIGTMP 207 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l~~~~~------~------~~~~~~~l~~i~~~L----kpgG~li~~~~ 207 (372)
. ....||.|++.- ++..-.+ . ..-..++|+++.+.+ ||||+++.+|-
T Consensus 152 -~--~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 -K--PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp -H--HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred -c--cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 0 234699999842 1211100 0 012467899999999 99999998773
No 236
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.63 E-value=0.00017 Score=62.37 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=68.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....|+|..||-|+.+..++..+. .|+++|+++.-|.-|+++++- .|+..++.|++||..++--.... ..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaei--------YGI~~rItFI~GD~ld~~~~lq~-~K 163 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEV--------YGVPDRITFICGDFLDLASKLKA-DK 163 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhcccee--------ecCCceeEEEechHHHHHHHHhh-hh
Confidence 456899999999999998876555 899999999999999999875 45677999999999764311000 22
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 199 (372)
..+|+|+.+..- +.+.....-+-.+...+.|.
T Consensus 164 ~~~~~vf~sppw----ggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 164 IKYDCVFLSPPW----GGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred heeeeeecCCCC----CCcchhhhhhhhhhhhcchh
Confidence 345666554322 12233333344444555554
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.62 E-value=0.00012 Score=61.66 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
...+.|+|+|+|.++.-.++ ...+|++++.+|.-...|.+++.- .-..++.++.+|+.+..+ .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E 95 (252)
T ss_pred hhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence 37899999999977665544 466899999999999999888642 114579999999988776 5
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
..|+|+|-+.=.-+.+ +....+++.+...||.+|.++
T Consensus 96 ~ADvvicEmlDTaLi~--E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTALIE--EKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHhhc--ccccHHHHHHHHHhhcCCccc
Confidence 7899999763222221 445678888888999998876
No 238
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.62 E-value=0.00042 Score=63.87 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHhhccccc-cchhhhhcCccccchhhhHHHHHHHHHHhC--CCCCEEEEecCCccccHHHHHHc-CCCE
Q 017369 34 ESTKVFARKVADHYSRRTN-QTLEEREASPIIHLKKLNNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDKA-KIGY 109 (372)
Q Consensus 34 ~~~~~~~~~va~~Y~~~~~-~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~--~~~~~VLDlGcG~G~~~~~l~~~-~~~~ 109 (372)
++.......+-.+|-.... .-...+--.++..--.|-.|+..+|..... +..-++||||||...+..-+... ..=+
T Consensus 49 ~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~ 128 (299)
T PF05971_consen 49 EAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWS 128 (299)
T ss_dssp HHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--E
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCe
Confidence 4455555554333322333 233333334443334677888887765422 12568999999998765444332 2236
Q ss_pred EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccc
Q 017369 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 110 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
++|+|+++..++.|++..... ..+..+|+++...-...-+.....+.+.||+++|+--++-
T Consensus 129 fvaTdID~~sl~~A~~nv~~N-------~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 129 FVATDIDPKSLESARENVERN-------PNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEEEES-HHHHHHHHHHHHHT--------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEecCCHHHHHHHHHHHHhc-------cccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 999999999999999998741 2567788887654322222223334578999999987764
No 239
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00062 Score=59.99 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=77.1
Q ss_pred HHHHHh-CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe-EEEECcCcc
Q 017369 76 VLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYE 153 (372)
Q Consensus 76 ~l~~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~ 153 (372)
.+.... ..++..+||+|+.||+++..++..+..+|+|+|..-..+..--+. .+++ .+...|+..
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~ 135 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRY 135 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhh
Confidence 344433 347889999999999999999999998999999987665443221 2233 334455554
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe-CChH
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDAN 210 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~-~~~~ 210 (372)
+.-.. + .+..|+++|.-++. ....+|..+..+++|+|.++.-+ |.-+
T Consensus 136 l~~~~-~--~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 136 LTPED-F--TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred CCHHH-c--ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEecchhh
Confidence 43211 1 24789999987764 36789999999999999876544 4443
No 240
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0015 Score=59.64 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc---CCC-cc---------------cc-cccCCC---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN---GDA-DH---------------HQ-RRKKFS--- 141 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~---~~~-~~---------------~~-~~~~~~--- 141 (372)
..+||-.|||.|+++..++..+. .+-|-++|--|+-...=.+. ..+ .. .| +.-..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 57899999999999999987655 56677887777643322221 000 00 00 000000
Q ss_pred --------cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHH
Q 017369 142 --------FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (372)
Q Consensus 142 --------~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 213 (372)
.......||+.+.--. ....+.||+|+..+. .++..+.-..|..|..+|||||+.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfF----IDTa~NileYi~tI~~iLk~GGvWi---------- 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFF----IDTAHNILEYIDTIYKILKPGGVWI---------- 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEE----eechHHHHHHHHHHHHhccCCcEEE----------
Confidence 0011112333221100 002357999987644 4566889999999999999999876
Q ss_pred HHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEec
Q 017369 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVK 287 (372)
Q Consensus 214 ~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~ 287 (372)
.+|.-+|+. .++. |. .-...+ =.+.+++..+++..||+++.+.
T Consensus 294 ---------NlGPLlYHF--~d~~-----------g~----~~~~si-----Els~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 294 ---------NLGPLLYHF--EDTH-----------GV----ENEMSI-----ELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ---------eccceeeec--cCCC-----------CC----cccccc-----cccHHHHHHHHHhcCcEEEEee
Confidence 233323332 1110 00 000111 3467889999999999999886
No 241
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0013 Score=57.88 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=69.0
Q ss_pred CCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+|+|||+|.|.-+..++- .+..+|+-+|....-+.-.+......+ -.|++++++.+++..- .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---------L~nv~i~~~RaE~~~~------~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---------LENVEIVHGRAEEFGQ------E 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---------CCCeEEehhhHhhccc------c
Confidence 58999999999998887663 344469999998876555544443211 2369999999887652 2
Q ss_pred CC-eeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 164 ~~-fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.. ||+|++-.+. ....++.-+...+|+||.++
T Consensus 133 ~~~~D~vtsRAva--------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 133 KKQYDVVTSRAVA--------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cccCcEEEeehcc--------chHHHHHHHHHhcccCCcch
Confidence 33 9999876543 35567788889999988865
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00063 Score=57.47 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=69.3
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cCccccc-
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL- 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~- 156 (372)
.++|+.+|||+||..|.++.-.... +.+.|.|||+-. .. ....+.++++ |+.+...
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~-----------p~~Ga~~i~~~dvtdp~~~ 125 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE-----------PPEGATIIQGNDVTDPETY 125 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc-----------CCCCcccccccccCCHHHH
Confidence 3578999999999999999877663 566799999843 11 0223556666 6655321
Q ss_pred ---ccccCCCCCeeEEEecccccccC-------CCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 157 ---DKVLADDAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 157 ---~~~~~~~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.+.+ ++...|+|++.++-.-.= ...+-...++.-....++|+|.|++.+.++
T Consensus 126 ~ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 126 RKIFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHHHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1223 678999999876321100 011122344555566789999999988654
No 243
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.57 E-value=0.0009 Score=60.49 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhCC-CCCEEEEecCCc--cccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 70 NNWIKSVLVQLYAR-RGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 70 ~~~~k~~l~~~~~~-~~~~VLDlGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..|+.+.+..+.-. .-...||||||- -...-+.+. .+..+|+-+|.++-.+..++..+... -....
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~g~t 123 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PRGRT 123 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TTSEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CCccE
Confidence 34455555544444 336899999994 234444443 35678999999999999999987641 01238
Q ss_pred EEEECcCccccc-------ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 145 RLICGDCYEVHL-------DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 145 ~~~~~D~~~~~~-------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.++++|+.+..- ...+..+.+ =.+++..++||+ .+.+++..+++.+...|.||.+|+++..
T Consensus 124 ~~v~aD~r~p~~iL~~p~~~~~lD~~rP-Vavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 124 AYVQADLRDPEAILAHPEVRGLLDFDRP-VAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp EEEE--TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred EEEeCCCCCHHHHhcCHHHHhcCCCCCC-eeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 899999987431 011111222 245556677776 4556899999999999999999998764
No 244
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00026 Score=58.29 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=92.2
Q ss_pred CCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+.+|||+|.|--.++-.+.. .....|.-.|-++..++..++...... ......+.....+...-.. ..
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~------~s~~tsc~vlrw~~~~aqs---q~ 99 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM------ASSLTSCCVLRWLIWGAQS---QQ 99 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc------ccccceehhhHHHHhhhHH---HH
Confidence 467899999985444433333 355579999999999988877654210 0001112222111111000 01
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcc
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~ 241 (372)
...+||+|+|.-++..- +....+.+.|...|+|.|..++..|..-
T Consensus 100 eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRRg------------------------------- 144 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRRG------------------------------- 144 (201)
T ss_pred hhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCccc-------------------------------
Confidence 34689999999988653 6678889999999999998765554321
Q ss_pred cCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHH
Q 017369 242 FKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEY 296 (372)
Q Consensus 242 f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~ 296 (372)
-+.+.|...+...||.+....++.+-+++.
T Consensus 145 -------------------------~sL~kF~de~~~~gf~v~l~enyde~iwqr 174 (201)
T KOG3201|consen 145 -------------------------QSLQKFLDEVGTVGFTVCLEENYDEAIWQR 174 (201)
T ss_pred -------------------------chHHHHHHHHHhceeEEEecccHhHHHHHH
Confidence 134556777888999999888888876654
No 245
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.0004 Score=59.19 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=75.5
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.+|||+|+|+|..+...+..+...|+..|+.+..+...+-+.+.+ ...+.+...|+.. .+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an----------gv~i~~~~~d~~g--------~~ 140 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN----------GVSILFTHADLIG--------SP 140 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc----------cceeEEeeccccC--------CC
Confidence 58999999999999888888788878999999988877777666532 3457778877754 34
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCChH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDAN 210 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~~~ 210 (372)
..||+++..-.+..- ....+++. +...|+..| .+++..|...
T Consensus 141 ~~~Dl~LagDlfy~~----~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNH----TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCc----hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 789999998776532 45566777 555555555 4555555543
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.51 E-value=8.3e-05 Score=58.03 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=44.9
Q ss_pred EEecCCccccHHHHHHc--CC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 89 LDLACGKGGDLIKWDKA--KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 89 LDlGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
||+|+..|..+..++.. .. .+++++|..+. .+.+.+.+++ .++..+++++.++..+.- . .+ +.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~--------~~~~~~~~~~~g~s~~~l-~-~~-~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK--------AGLSDRVEFIQGDSPDFL-P-SL-PDG 68 (106)
T ss_dssp --------------------------EEEESS---------------------GGG-BTEEEEES-THHHH-H-HH-HH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh--------cCCCCeEEEEEcCcHHHH-H-Hc-CCC
Confidence 68999999877766652 12 37999999995 2222222221 233557999999986531 1 11 247
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
++|+|+.-..- +.+.....++.+.+.|+|||.+++.
T Consensus 69 ~~dli~iDg~H-----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 69 PIDLIFIDGDH-----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 89999987532 2266788899999999999998864
No 247
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.51 E-value=0.00042 Score=64.20 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
++.++..+.+.++..++|.-||.|+++..++.. +.+.|+|+|.++.+++.|++++... ..++.+++++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----------~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----------EGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----------CCcEEEEeCCH
Confidence 455666666778899999999999999999875 3478999999999999999987531 34689999988
Q ss_pred cccccccccCCCCCeeEEEecccc
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l 175 (372)
.++.-.-......++|.|++...+
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEeccC
Confidence 765321000023579999887644
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.45 E-value=0.0013 Score=61.24 Aligned_cols=118 Identities=15% Similarity=0.064 Sum_probs=80.6
Q ss_pred CCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHH--hcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
+...+||-+|.|.|-.+.++++.+ ..+++-+|++|.|++.+++. ....+. .+-.+++++++..|+.+.-- .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~----~sf~dpRv~Vv~dDAf~wlr-~- 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQ----GSFSDPRVTVVNDDAFQWLR-T- 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhcc----CCccCCeeEEEeccHHHHHH-h-
Confidence 345789999999999999998875 67899999999999999843 221111 12235688999999875321 1
Q ss_pred cCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
..+.||.|+...-=-.-+. ..---..+..-+++.|+++|.+++...+
T Consensus 362 --a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 362 --AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred --hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 3468999998541110000 0011246788899999999999976533
No 249
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.44 E-value=3.3e-05 Score=66.03 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+.++||+|+|.|..+..+.. ...+|++.++|..|+...++..- ++--. .+-.+ .+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk~y--------------nVl~~-~ew~~--------t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKKNY--------------NVLTE-IEWLQ--------TD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhcCC--------------ceeee-hhhhh--------cC
Confidence 457999999999998877643 34469999999999988765421 22111 11111 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-gG~li~~~ 206 (372)
-++|+|.|...+.-. .++-++|+.++.+|+| +|.+|+..
T Consensus 168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEEE
Confidence 479999999888655 4577899999999999 89887765
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0019 Score=55.91 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..++.+||++|-|-|.....+.+.++..-+-++..++.++..+...-.. ..++....+--.+.- + .+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e----------k~nViil~g~WeDvl-~-~L- 165 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE----------KENVIILEGRWEDVL-N-TL- 165 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc----------ccceEEEecchHhhh-c-cc-
Confidence 3688999999999998888887778878889999999998887754321 235655555433311 1 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+++.||-|+-.---.+. ++...+.+.+.++|||+|+|-.
T Consensus 166 ~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEE
Confidence 57889999865443443 7889999999999999998753
No 251
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00027 Score=68.55 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=52.7
Q ss_pred HhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
..++.+..+||++||||.+...++ ++..+|+||++++++++.|+.++...+ ..|++|+++-+++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng---------isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING---------ISNATFIVGQAED 442 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC---------ccceeeeecchhh
Confidence 356778999999999999998876 467789999999999999999887432 3479999995554
No 252
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=9.9e-05 Score=60.27 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=48.5
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
.+++.|+|.+..++.|+ +.+.-..+++++++.|||||++-+.+|+..++.....
T Consensus 44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence 67999999999999998 6678889999999999999999999999988776544
No 253
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.28 E-value=0.0038 Score=59.12 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCCCCEEEEecCCccccHHHHHHc----------CC-------CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCe
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA----------KI-------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~----------~~-------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 144 (372)
.+..-+|+|+||..|..+..+... .. -+|+--|+=.+-....-+.+...... -...-..-+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~--~~~~~~~f~ 91 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS--LKKFRNYFV 91 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH--HHHTTSEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc--cCCCceEEE
Confidence 345579999999999987766531 11 15777776544322222111100000 000001112
Q ss_pred EEEECcCcccccccccCCCCCeeEEEecccccccCC------C-----------------------------HHHHHHHH
Q 017369 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRAL 189 (372)
Q Consensus 145 ~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l 189 (372)
.-+-+...+--+ |.++.|++++..++||+=. + ..|+..+|
T Consensus 92 ~gvpgSFy~rLf-----P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 92 SGVPGSFYGRLF-----PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EEEES-TTS--S------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccC-----CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 223344444333 7899999999999999811 1 13556677
Q ss_pred HHHHHhcCCCcEEEEEeC
Q 017369 190 ANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 190 ~~i~~~LkpgG~li~~~~ 207 (372)
+.=++-|+|||+++++++
T Consensus 167 ~~Ra~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFL 184 (334)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHhhheeccCcEEEEEEe
Confidence 777778999999998874
No 254
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.22 E-value=0.0026 Score=51.87 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=58.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCC-------C
Q 017369 109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-------T 181 (372)
Q Consensus 109 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~ 181 (372)
+|+|+||-+++++.+++++.+ .++..++.+++.+-..+.. .+ +.+++|+|+.+.. |+.. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~--------~~~~~~v~li~~sHe~l~~--~i-~~~~v~~~iFNLG--YLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE--------AGLEDRVTLILDSHENLDE--YI-PEGPVDAAIFNLG--YLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH--------TT-GSGEEEEES-GGGGGG--T---S--EEEEEEEES--B-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHh--------cCCCCcEEEEECCHHHHHh--hC-ccCCcCEEEEECC--cCCCCCCCCCcC
Confidence 589999999999999999985 3344579999877665442 22 2358999987653 4432 3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 182 EARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 182 ~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.-..+++.+.++|+|||.+++.+
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEE
Confidence 3455788899999999999988776
No 255
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.21 E-value=0.0025 Score=60.57 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred HhCCCCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
+.++++.+|||+++..|+=+..++. ...+.|++.|.+..-+...+.++..++ -.+......|..+++-.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---------v~ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---------VTNTIVSNYDGREFPEK 307 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---------CCceEEEccCccccccc
Confidence 3567899999999999997766655 356689999999999988888876533 22456667777655421
Q ss_pred cccCCCCCeeEEEecc------cc------cccCCCH-------HHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 158 KVLADDAPFDICSCQF------AM------HYSWSTE-------ARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~------~l------~~~~~~~-------~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. + ++||-|+... ++ .. ..+. .-.+++|..+..++++||+++.+|
T Consensus 308 -~~-~-~~fDRVLLDAPCSGtgvi~K~~~vkt-~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 308 -EF-P-GSFDRVLLDAPCSGTGVISKDQSVKT-NKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred -cc-C-cccceeeecCCCCCCccccccccccc-chhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 11 3 3899988532 10 00 0011 124778888999999999999766
No 256
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.12 E-value=0.0013 Score=54.16 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=44.6
Q ss_pred EEEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 87 VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
+|||+|||.|..+..++..... +++++|+++.+.+.+++++.. .++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~--------n~~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL--------NNL-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH--------cCC-CcEEEEEeeeeC
Confidence 4899999999998888776543 799999999999999998763 122 247777766543
No 257
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.05 E-value=0.0045 Score=53.65 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcc--------------------------
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADH-------------------------- 133 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------------- 133 (372)
..+-++.|.+||.|.++.-+.- .....|+|-|+++++++.|++++.-.-.-
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4557999999999987665533 23457999999999999998876311000
Q ss_pred ---c----ccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccccccc--CC---CHHHHHHHHHHHHHhcCCCcE
Q 017369 134 ---H----QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEARARRALANVSALLRPGGT 201 (372)
Q Consensus 134 ---~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~---~~~~~~~~l~~i~~~LkpgG~ 201 (372)
. ....+-.......++|+++.............|+|+...-.-.+ |+ +..-...+|..++.+|-++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 0 11122234567788888763211111133457999986422111 32 344578899999999954555
Q ss_pred EEEE
Q 017369 202 FIGT 205 (372)
Q Consensus 202 li~~ 205 (372)
+.++
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.99 E-value=0.0024 Score=56.99 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
+.+..+|+|||||-=-++..|.... ...|+|+||+..+++......... ..+..+...|+...+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----------~~~~~~~v~Dl~~~~----- 167 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----------GVPHDARVRDLLSDP----- 167 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----------T-CEEEEEE-TTTSH-----
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----------CCCcceeEeeeeccC-----
Confidence 3457899999999988888887654 347999999999999888776532 345677777876544
Q ss_pred CCCCCeeEEEeccccccc
Q 017369 161 ADDAPFDICSCQFAMHYS 178 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~ 178 (372)
+....|+.+..=+++-+
T Consensus 168 -~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCL 184 (251)
T ss_dssp -TTSEESEEEEET-HHHH
T ss_pred -CCCCcchhhHHHHHHHH
Confidence 45789999988777655
No 259
>PRK10742 putative methyltransferase; Provisional
Probab=96.98 E-value=0.004 Score=55.76 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=63.0
Q ss_pred HHhCCCCC--EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEEEECcCcccc
Q 017369 79 QLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVH 155 (372)
Q Consensus 79 ~~~~~~~~--~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~ 155 (372)
...++++. +|||+-+|.|.++..++..+. .|+++|-++.+....+..+...... ..... +..+++++++|..+.-
T Consensus 81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYAD-AEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred HhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhc-cccchhhhceEEEEeCcHHHHH
Confidence 34556766 999999999999999998866 5999999999887776665531000 00000 1246888899886542
Q ss_pred cccccCCCCCeeEEEecccccc
Q 017369 156 LDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
- . ....||+|++.-.+.+
T Consensus 159 ~-~---~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 159 T-D---ITPRPQVVYLDPMFPH 176 (250)
T ss_pred h-h---CCCCCcEEEECCCCCC
Confidence 1 1 1247999998766554
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.96 E-value=0.013 Score=51.13 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=76.1
Q ss_pred CCCCEEEEecCCccccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.+..+.|+||-.|.+...+...+. ..+++.|+++..++.|.+.+.. .++..++...++|... ++.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~--------~~l~~~i~vr~~dgl~-~l~---- 81 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK--------NNLSERIDVRLGDGLA-VLE---- 81 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh--------cCCcceEEEeccCCcc-ccC----
Confidence 4566699999999999999888654 4599999999999999998875 5556778888888743 221
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+..+|+|+...+=- .....+|++-...|+.==++++.
T Consensus 82 ~~d~~d~ivIAGMGG------~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 82 LEDEIDVIVIAGMGG------TLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ccCCcCEEEEeCCcH------HHHHHHHHHhhhhhcCcceEEEC
Confidence 455799887665432 34677888877777643344443
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.93 E-value=0.006 Score=60.90 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc---C--CCEEE
Q 017369 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYV 111 (372)
Q Consensus 37 ~~~~~~va~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~ 111 (372)
...++-.-..|+...... ....+..+.....+.. .+.+.+..+|+|.+||+|+++...... . ...++
T Consensus 147 G~~yE~ll~~fa~~~~k~-----~GEfyTP~~v~~liv~---~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~y 218 (489)
T COG0286 147 GDAYEYLLRKFAEAEGKE-----AGEFYTPREVSELIVE---LLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIY 218 (489)
T ss_pred hHHHHHHHHHHHHhcCCC-----CCccCChHHHHHHHHH---HcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEE
Confidence 344444555554322221 1333445555333333 333457779999999999987776542 1 24689
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEeccccc---cc----------
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH---YS---------- 178 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~---~~---------- 178 (372)
|.|+++.....|+-++-- ++....+....+|....|....-...+.||.|+++--+. |.
T Consensus 219 GqE~~~~t~~l~~mN~~l--------hgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~ 290 (489)
T COG0286 219 GQEINDTTYRLAKMNLIL--------HGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDE 290 (489)
T ss_pred EEeCCHHHHHHHHHHHHH--------hCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccc
Confidence 999999999999988652 222223455556554443211000236799888864221 11
Q ss_pred -------CCCHHHH-HHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 179 -------WSTEARA-RRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 179 -------~~~~~~~-~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+.+.... ..+++.+...|+|||+.-+.+|++
T Consensus 291 ~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 291 RFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 1111222 788999999999999766666543
No 262
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.91 E-value=0.054 Score=52.01 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCCCeeEEEecccccccCCC----------------------------------HHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWST----------------------------------EARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
|.++.+++.+..++||+-.- ..|+..+|+.=++-|.|||.+++++.
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 78999999999999998210 01355666666778899999998874
Q ss_pred C
Q 017369 208 D 208 (372)
Q Consensus 208 ~ 208 (372)
.
T Consensus 239 G 239 (386)
T PLN02668 239 G 239 (386)
T ss_pred c
Confidence 3
No 263
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.91 E-value=0.054 Score=49.47 Aligned_cols=114 Identities=13% Similarity=-0.010 Sum_probs=71.9
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCCh-HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc---
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL--- 160 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--- 160 (372)
...|+.||||-= +..+.-.....+.-+|++- ++++.-++.+.+.+ .....+..++..|+. ..+...+
T Consensus 82 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 82 IRQVVILGAGLD--TRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELG------AEPPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred CcEEEEeCCccc--cHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcC------CCCCCceEEeccCch-hhHHHHHHhC
Confidence 457999999874 4443222222345555554 35555555554211 112346788888886 2222111
Q ss_pred -CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 161 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.....--++++-.++.|+ +.+....+|+.+.+...||+.+++...+.
T Consensus 153 gfd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 122345688888899998 77889999999999999999999887543
No 264
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.89 E-value=0.0055 Score=53.95 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChH----HHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEG----SIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+++++|+.+||-||+++|.......+. +.+-|++++.|+- .+..|++| .|+--+.-|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------------tNiiPIiEDA 214 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------------TNIIPIIEDA 214 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------------CCceeeeccC
Confidence 3567889999999999999877776553 4456999999974 34445443 2466677787
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....--.. .-+-.|+|++..+- ++..+.+.-++...||+||.|++++
T Consensus 215 rhP~KYRm--lVgmVDvIFaDvaq------pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 215 RHPAKYRM--LVGMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCchheee--eeeeEEEEeccCCC------chhhhhhhhhhhhhhccCCeEEEEE
Confidence 64321111 12467888765432 2455666778899999999999876
No 265
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.019 Score=53.98 Aligned_cols=121 Identities=21% Similarity=0.184 Sum_probs=74.2
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc---C--CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
.+.++|+.+|||+|+..|.=+..++.. . .+.|++-|.+..-+....+..... ...++.+...|+..
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---------~~~~~~v~~~~~~~ 220 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---------PSPNLLVTNHDASL 220 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---------CCcceeeeccccee
Confidence 445679999999999999988777653 2 338999999987666655554321 02234444444433
Q ss_pred ccccc--ccC--CCCCeeEEEecc------ccccc---CCC-H---------HHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 154 VHLDK--VLA--DDAPFDICSCQF------AMHYS---WST-E---------ARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 154 ~~~~~--~~~--~~~~fD~V~~~~------~l~~~---~~~-~---------~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
.+-.. .+. ....||-|+|.- ++... |.. + .-...+|.+-.++||+||.++.+|-.
T Consensus 221 ~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 221 FPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred ccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 33210 000 235799998842 11110 100 0 12356889999999999999988743
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.58 E-value=0.0077 Score=55.91 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 73 ~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
++.++..+.+.++..++|.-.|.|+++..++.. +.+.++|+|-++.+++.|++++.. ...++.+++++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----------~~~r~~~~~~~F 78 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----------FDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----------CCTTEEEEES-G
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----------ccceEEEEeccH
Confidence 455666677788999999999999999999975 447899999999999999988763 245788898887
Q ss_pred cccccccccC-CCCCeeEEEecc
Q 017369 152 YEVHLDKVLA-DDAPFDICSCQF 173 (372)
Q Consensus 152 ~~~~~~~~~~-~~~~fD~V~~~~ 173 (372)
.++.-.-... ....+|.|+...
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHHHHccCCCccCEEEEcc
Confidence 7654211010 235788887754
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.57 E-value=0.0045 Score=53.88 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCCEEEEecCCccccHHHHHH-----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
+...|+|+|.-.|+-+..++. ...++|+|+|+.-...... ..+ ...+..++++++||..+...-.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e--------~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIE--------SHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGG--------G----TTEEEEES-SSSTHHHH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHh--------hccccCceEEEECCCCCHHHHH
Confidence 457999999999997776654 1456899999954322211 111 1233568999999987654321
Q ss_pred c---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
. ........+|+.- + +|. ..+..+.|+....++++|+++|+.-
T Consensus 102 ~v~~~~~~~~~vlVilD-s-~H~---~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 102 QVRELASPPHPVLVILD-S-SHT---HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp TSGSS----SSEEEEES-S--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHhhccCCceEEEEC-C-Ccc---HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 1 1112233344432 2 222 2456788888999999999998754
No 268
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.53 E-value=0.0065 Score=52.17 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCEEEEecCCccccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.-.+.|||||-|+++.++....+.. +.|.+|-...-+..+.|+...... ...+...++.+...++...- +... ..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~--~a~~~~~ni~vlr~namk~l-pn~f-~k 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT--SAEGQYPNISVLRTNAMKFL-PNFF-EK 136 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc--ccccccccceeeeccchhhc-cchh-hh
Confidence 3568999999999999998766555 889999988888777776532110 01122334555555544321 0000 11
Q ss_pred CCeeEEEecccccccCCCHH----HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEA----RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~----~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+..+-.+..+---|+..... --..++.+..-+|++||.++..+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 21221111111111100000 01357788888999999876544
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.011 Score=48.09 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 151 (372)
.+..+|..+..++..+.+|+|+|.|+.....++.+....+|+++++-.+..++-+.-. .++.....|..-|+
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R--------~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWR--------AGCAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHH--------Hhcccchhhhhhhh
Confidence 3444555555567789999999999998887776655689999999999888876542 55666788888888
Q ss_pred cccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE-EEeCChH
Q 017369 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTMPDAN 210 (372)
Q Consensus 152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li-~~~~~~~ 210 (372)
...++ ..|..|+...+-.- ...+-..+..-|..|..++ +.+|-+.
T Consensus 132 wK~dl-------~dy~~vviFgaes~-------m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 132 WKVDL-------RDYRNVVIFGAESV-------MPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhccc-------cccceEEEeehHHH-------HhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 87766 33444443322211 2223344555666666654 4455543
No 270
>PRK11524 putative methyltransferase; Provisional
Probab=96.34 E-value=0.011 Score=54.90 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
-+-..++.....+|+.|||.-||+|..+...... ..+++|+|++++.++.|++|+.
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHH
Confidence 3344456667789999999999999877766544 4479999999999999999975
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.32 E-value=0.013 Score=56.27 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCc-CeEEEECcCccccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~ 160 (372)
.+.+|||.=+|+|.=++.++.. +...|+.-|+|+++++..+++.+- +++.. .+++.+.|+..+-..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~--- 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS--- 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence 3568999999999888887765 456799999999999999998763 34454 688889998765421
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
....||+|=.. +-..+..+|..+.+.++.||++.+|.-|...+
T Consensus 118 -~~~~fD~IDlD--------PfGSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 118 -RQERFDVIDLD--------PFGSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp -STT-EEEEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred -ccccCCEEEeC--------CCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 35789999532 11346789999999999999999987665544
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.023 Score=52.07 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCC--CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (372)
.+..++..+.+.++...+|.--|.|+++..++.... ++++|+|-++.+++.|+++.... ..++.++++
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----------~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----------DGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----------CCcEEEEeC
Confidence 456677777888999999999999999999998643 67999999999999999998632 457888888
Q ss_pred cCcccccccccCCCCCeeEEEecc
Q 017369 150 DCYEVHLDKVLADDAPFDICSCQF 173 (372)
Q Consensus 150 D~~~~~~~~~~~~~~~fD~V~~~~ 173 (372)
++.++...-.....+.+|-|+...
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEec
Confidence 776544210000234677776643
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.22 E-value=0.0046 Score=57.20 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=76.1
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHH-------HHHhcCCCcccccccCCCcCeEEEECcCcc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 153 (372)
..+||..|+|.-.|||.++...+.- .+.|+|.||+-.|+... +.++++++ ....-+.++.+|..+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg-------~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG-------SSSQFLDVLTADFSN 276 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhC-------CcchhhheeeecccC
Confidence 4579999999999999998877654 44899999998888732 22333221 123346677888887
Q ss_pred cccccccCCCCCeeEEEecc------------------------cccccCCC-----HHHHHHHHHHHHHhcCCCcEEEE
Q 017369 154 VHLDKVLADDAPFDICSCQF------------------------AMHYSWST-----EARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~------------------------~l~~~~~~-----~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.++. ....||.|+|.- ...|.... ..-....|.-.++.|.-||++++
T Consensus 277 ~~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 277 PPLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred cchh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 6664 456899999951 00111000 01234566677788888888887
Q ss_pred EeC
Q 017369 205 TMP 207 (372)
Q Consensus 205 ~~~ 207 (372)
-.|
T Consensus 353 w~p 355 (421)
T KOG2671|consen 353 WLP 355 (421)
T ss_pred ecC
Confidence 666
No 274
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.22 E-value=0.013 Score=51.95 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 72 ~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
-+-..++.....++..|||.-||+|..+...... ..+.+|+|+++..++.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 3444455667789999999999999877776554 4479999999999998864
No 275
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.029 Score=51.10 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
....+||-+|.|.|+.+.....+ ....+.-+|+....++..++-....... --+.++.++.||...+-- ..
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g-----y~~~~v~l~iGDG~~fl~--~~- 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG-----YEGKKVKLLIGDGFLFLE--DL- 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc-----cCCCceEEEeccHHHHHH--Hh-
Confidence 45689999999999999887765 3456999999999999888876643211 113578888888754321 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
..++||+|+.--.=--......-.+.+++.+.+.||+||+++..--+.....+-++
T Consensus 192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIK 247 (337)
T ss_pred ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHH
Confidence 36899999875321111001112467788899999999998876655444433333
No 276
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.15 E-value=0.015 Score=49.75 Aligned_cols=115 Identities=22% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHhCCCCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHH----HHHHHHhcCCCcccccccCCCcCeEEEECcCc
Q 017369 79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSI----EDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 152 (372)
...++++.+|+|+-.|.|.++.-+... ..+.|+++=..+... ...+.+... +.....|++.+-.+..
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~-------~e~~~aN~e~~~~~~~ 115 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA-------REPVYANVEVIGKPLV 115 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh-------hhhhhhhhhhhCCccc
Confidence 345689999999999999988877653 334677765544311 101111000 0011123333433333
Q ss_pred ccccccccCCCCCeeEEEecc---cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 153 EVHLDKVLADDAPFDICSCQF---AMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~---~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+. +.+..|++.... .+|.-.-......++...+++.|||||.+++.-
T Consensus 116 A~~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 116 ALG------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccC------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 322 233445544421 111111123567889999999999999987653
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.09 E-value=0.044 Score=51.58 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=65.4
Q ss_pred HhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....|+.+|+=+|+| -|..+.++++....+|+++|.|++-++.|++... -.++... ..... +
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~-~~~~~-~ 224 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSS-DSDAL-E 224 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcC-Cchhh-H
Confidence 456799999999998 3446777777555799999999999999988754 2233322 11111 1
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. -.+.||+|+..-. . ..+....+.|++||.+++.
T Consensus 225 ~--~~~~~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 225 A--VKEIADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred H--hHhhCcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence 1 1134999986544 3 4567778899999997754
No 278
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.97 E-value=0.012 Score=56.27 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=51.1
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
..|||+|.|||.++.-.+..+...|++++.=..|.+.|++...+ +++..+++++.--..++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k--------ng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK--------NGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc--------CCCccceeeeccccceee
Confidence 46899999999888887778888899999999999999998875 667788888865544443
No 279
>PRK13699 putative methylase; Provisional
Probab=95.92 E-value=0.025 Score=50.56 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 75 ~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
..++.....++..|||.-||+|..+...... ..+++|+|++++..+.|.+|+..
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHH
Confidence 3345556678999999999999877776554 34799999999999999999863
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.42 Score=42.64 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCCccccchhhhHHHHHHHH---hhccccccchhhhhcCccccchhhhHHHHHHHHHHhCCCCCEEEEecCCccccHHHH
Q 017369 26 GDSHFLEDESTKVFARKVAD---HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW 102 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~va~---~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l 102 (372)
-..+|.-++.-...|+.|.. +|-.+... ..+....+.+.. ...+...+|+|+|+..-+..+
T Consensus 33 lpP~~FYD~~GS~LFe~I~~LPEYYpTRtEa-------------aIl~~~a~Eia~---~~g~~~lveLGsGns~Ktr~L 96 (321)
T COG4301 33 LPPKYFYDDRGSELFEQITRLPEYYPTRTEA-------------AILQARAAEIAS---ITGACTLVELGSGNSTKTRIL 96 (321)
T ss_pred CCCceeecccHHHHHHHHhccccccCchhHH-------------HHHHHHHHHHHH---hhCcceEEEecCCccHHHHHH
Confidence 34566666667778887754 33322111 112222222221 234789999999998766666
Q ss_pred HHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC-eeEEEeccccc
Q 017369 103 DKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP-FDICSCQFAMH 176 (372)
Q Consensus 103 ~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-fD~V~~~~~l~ 176 (372)
++. ...+++.+|+|...+....+.+.. .-....+.-+++|... ++... +..+ ==.++...++-
T Consensus 97 lda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~--------~y~~l~v~~l~~~~~~-~La~~--~~~~~Rl~~flGStlG 165 (321)
T COG4301 97 LDALAHRGSLLRYVPIDVSASILRATATAILR--------EYPGLEVNALCGDYEL-ALAEL--PRGGRRLFVFLGSTLG 165 (321)
T ss_pred HHHhhhcCCcceeeeecccHHHHHHHHHHHHH--------hCCCCeEeehhhhHHH-HHhcc--cCCCeEEEEEeccccc
Confidence 553 234799999999988765544431 1113346667777642 22111 2222 22333344666
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 177 YSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 177 ~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++ ++.+...+|..+...|+||-+|++.+
T Consensus 166 N~--tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 166 NL--TPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CC--ChHHHHHHHHHHHhcCCCcceEEEec
Confidence 66 67889999999999999999988765
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.84 E-value=0.049 Score=47.85 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=77.7
Q ss_pred hhHHHHHH-HHhhccccccchhhhhcCccccchhhhHHHHHHHHHHh---CCCCCEEEEecCCccccHHHHHHcCCC-EE
Q 017369 36 TKVFARKV-ADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIG-YY 110 (372)
Q Consensus 36 ~~~~~~~v-a~~Y~~~~~~~~~~r~~s~~~~~~~~~~~~k~~l~~~~---~~~~~~VLDlGcG~G~~~~~l~~~~~~-~v 110 (372)
.+.+...+ +.+|.-+.-.-.+.+.-.++-.-..+..++..+|.... ..++.++||||.|.-..--.+-.+..+ +.
T Consensus 26 Vk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrf 105 (292)
T COG3129 26 VKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRF 105 (292)
T ss_pred HHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeeccee
Confidence 33344333 45565332333333444455444455556666655432 225678999999876543333222233 48
Q ss_pred EEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccc
Q 017369 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 111 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
+|.|+++..++.|+...... .++...++.....-.+--|...+...+.||+++|+--+|-
T Consensus 106 vGseid~~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 106 VGSEIDSQSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ecCccCHHHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 99999999999999887632 2334445544332222223333334689999999998874
No 282
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.78 E-value=0.054 Score=48.69 Aligned_cols=115 Identities=15% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
....||++|.|+|.....++......|+-.|+..........+-.. + .+...++..+.....+-.+....... .+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~---~~l~~~g~~v~v~~L~Wg~~~~~~~~-~~ 160 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-N---IALNQLGGSVIVAILVWGNALDVSFR-LP 160 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-h---hhhhhcCCceeEEEEecCCcccHhhc-cC
Confidence 3457999999999877777665666899999876443332221110 0 11122232343333332221111111 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
..||+|++.-++..- .....++..++..|..+|.+++.++
T Consensus 161 ~~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 161 NPFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred CcccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 229999999888643 4566778888888888887666665
No 283
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.77 E-value=0.39 Score=42.88 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=61.7
Q ss_pred hCCCCCEEEEecCCccccHHHHH-HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
.--.|.+||-+|=+.-. ++.++ ...+.+|+.+|+++.+++.-++..++. +.+++.++.|+.+ ++++.
T Consensus 41 gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----------gl~i~~~~~DlR~-~LP~~ 108 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEE----------GLPIEAVHYDLRD-PLPEE 108 (243)
T ss_dssp T-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----------T--EEEE---TTS----TT
T ss_pred CcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----------CCceEEEEecccc-cCCHH
Confidence 33468899999855432 22222 245668999999999999888776532 3348899999976 34322
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCc-EEEEEeCC
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPD 208 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG-~li~~~~~ 208 (372)
+ .++||++++.-.- +.+.+.-++......||..| ..++..-+
T Consensus 109 ~--~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 109 L--RGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp T--SS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred H--hcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 2 3899999986532 45788899999999998766 55555433
No 284
>PHA01634 hypothetical protein
Probab=95.74 E-value=0.061 Score=42.76 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=40.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+.+|+|+|.+-|.-++.++..+...|+++++++...+..++..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 578999999999999999888888889999999999999988765
No 285
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.62 E-value=0.027 Score=51.94 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=53.0
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+.||.|+...-+...+...+.++|+++.+++..+.++.. ..+++|+.++...+. ...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------------~~~~~Di~~~~~~~~---~~~~ 63 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------------KLIEGDITKIDEKDF---IPDI 63 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------------CCccCccccCchhhc---CCCC
Confidence 6999999999998888777776689999999999988877642 146778776653211 3569
Q ss_pred eEEEecc
Q 017369 167 DICSCQF 173 (372)
Q Consensus 167 D~V~~~~ 173 (372)
|+++...
T Consensus 64 D~l~~gp 70 (275)
T cd00315 64 DLLTGGF 70 (275)
T ss_pred CEEEeCC
Confidence 9999875
No 286
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.53 E-value=0.028 Score=46.61 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHH-HHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIED-CRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+.+++-+|...=+.=...+..+..++.-||.++--++. .+.+.. .+...|.... +. .-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s----------------si~p~df~~~-~~---~y~ 61 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS----------------SILPVDFAKN-WQ---KYA 61 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc----------------cccHHHHHHH-HH---Hhh
Confidence 45677777765433333344566678888876522111 111111 1111121110 00 024
Q ss_pred CCeeEEEeccccccc--------CCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
++||.+.|..+++|. .++ ..-...+.++.++|||||.+++.+|-+
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp-~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDP-IGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccchhhheechhccccccccCCCCCc-cccHHHHHHHHHhhccCCeEEEEeecC
Confidence 789999999999876 111 223567788999999999999999765
No 287
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.052 Score=50.59 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
..+|||+|.|.|.-+..+... ....++.++.|+..-+........... .....+..-++.|-..++ .
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp------~ 182 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLP------A 182 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCC------c
Confidence 467999999999766554332 223577888888655544333221000 011111222223322222 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~ 208 (372)
...|++|+...-+-+. ..+......++.+..++.|||.+++..+.
T Consensus 183 ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 183 ADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 4567766655443332 23334455889999999999999987654
No 288
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.27 E-value=0.0092 Score=46.24 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=31.3
Q ss_pred CeeEEEecccccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 165 PFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.||+|+|..+..|+. ...+.+..+++.+++.|+|||.||+.--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999987654431 1235678999999999999999998753
No 289
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.67 E-value=0.02 Score=52.22 Aligned_cols=96 Identities=20% Similarity=0.136 Sum_probs=68.4
Q ss_pred CCCEEEEecCCccccHH-HHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+..|.|+-+|-|.++. .+...+...|+++|.+|..++..++.++. ++...+...+.+|..... +
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence 45889999999999998 66677888899999999999999988774 333445566677776544 4
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~ 201 (372)
....|-|... .+.+++..+ -.+.++|||.|-
T Consensus 260 ~~~AdrVnLG----LlPSse~~W----~~A~k~Lk~egg 290 (351)
T KOG1227|consen 260 RLRADRVNLG----LLPSSEQGW----PTAIKALKPEGG 290 (351)
T ss_pred cccchheeec----cccccccch----HHHHHHhhhcCC
Confidence 5778888542 334444444 445567777544
No 290
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.14 Score=48.36 Aligned_cols=104 Identities=19% Similarity=0.141 Sum_probs=75.1
Q ss_pred CCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|||.=||+|.=.+.++.. +...++.-|+||.+++..+++.... ...+...+..|+..+-.. ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---------~~~~~~v~n~DAN~lm~~----~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---------SGEDAEVINKDANALLHE----LH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---------CcccceeecchHHHHHHh----cC
Confidence 679999999999888777664 3337999999999999999998731 123455566777654431 23
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
..||+|=.. +-..+..++..+.+.++.||++.+|.-|.
T Consensus 120 ~~fd~IDiD--------PFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 120 RAFDVIDID--------PFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCccEEecC--------CCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 678888432 11235678888889999999998876543
No 291
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.58 E-value=0.2 Score=48.55 Aligned_cols=109 Identities=24% Similarity=0.227 Sum_probs=66.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-c--c
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V--H 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~--~ 155 (372)
...++.+||.+|||. |..+..+++... ..++++|.+++.++.+++... +.++...-.+ . .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------------~~vi~~~~~~~~~~~ 245 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------------AETINFEEVDDVVEA 245 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------cEEEcCCcchHHHHH
Confidence 456789999999988 777777776544 369999999999998887532 1122111110 0 0
Q ss_pred cccccCCCCCeeEEEecccc-----------cccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAM-----------HYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l-----------~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.. ......+|+|+....- .|.+....+....+..+.+.|+++|.++..
T Consensus 246 l~~-~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 246 LRE-LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHH-HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 000 1123468988774321 111111123355788899999999998754
No 292
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.57 E-value=0.11 Score=45.65 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred CCEEEEecCCccccHHHHHHc------CC----CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 85 GDVVLDLACGKGGDLIKWDKA------KI----GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~------~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
-.+|+|++...|.++..+.+. .. ..+++||+-+ | .. ...+.-+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M------------------aP-I~GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M------------------AP-IEGVIQLQGDITSA 101 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C------------------Cc-cCceEEeecccCCH
Confidence 468999999999998877652 11 1399999854 1 11 22467788998765
Q ss_pred ccc----cccCCCCCeeEEEecc-----cccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLD----KVLADDAPFDICSCQF-----AMHYSW--STEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~----~~~~~~~~fD~V~~~~-----~l~~~~--~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
... +++ ..++.|+|+|.. .+|-+- --.+-+..+|.-...+|||||.|+..+.
T Consensus 102 stae~Ii~hf-ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 102 STAEAIIEHF-GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hHHHHHHHHh-CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 421 112 346899999976 454330 0112245566777789999999997664
No 293
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.45 E-value=0.08 Score=51.91 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=61.5
Q ss_pred CEEEEecCCccccHHHHHHcCCCEEEEEeC--ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccccccccCC
Q 017369 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDI--AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~ 162 (372)
..|+|+..|.|+++..+...+. .|.-|=+ .+..+..--.|.- +-..+ |. +.++. -
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydRGL---------------IG~yh-DWCE~fsT-----Y 424 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDRGL---------------IGVYH-DWCEAFST-----Y 424 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhccc---------------chhcc-chhhccCC-----C
Confidence 4799999999999999876543 3332222 2223333222211 11111 22 22333 3
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+||+|-+...+... ...-+...+|-++-|+|+|||.+++.
T Consensus 425 PRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred Ccchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence 5899999988776553 34456889999999999999998874
No 294
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.21 E-value=1.9 Score=40.17 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCC-hHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC--
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA-EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA-- 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-- 161 (372)
...|+-||||- ++..+--.....+.-.|++ |+.++.=++.+.+.+. ..+....++..|+.+..+...+.
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~------~~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGA------TPPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCC------CCCceEEEEeccccccchHHHHHhc
Confidence 47899999975 4444422222234444444 5555555555553211 12236888999998655443332
Q ss_pred --CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 162 --DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
....--++++-..+.|+ +++...++|..|...+.||-.++...+
T Consensus 165 G~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 24556688889999998 778899999999999999988887765
No 295
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.03 Score=54.48 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCEEEEecCCccccHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+|||.=|++|..++.++.. +..+|++.|.++..++..+++.+- ++....++..+.|+..+-....-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~--------N~v~~ive~~~~DA~~lM~~~~~- 179 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL--------NGVEDIVEPHHSDANVLMYEHPM- 179 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh--------cCchhhcccccchHHHHHHhccc-
Confidence 4678999999999999998874 556799999999999988887763 33445566677787655442111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHH
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~ 212 (372)
....||+|=.. +-.....+|..+.+.++.||.+.+|.-|...+
T Consensus 180 ~~~~FDvIDLD--------PyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 180 VAKFFDVIDLD--------PYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred cccccceEecC--------CCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 24789998421 22335678999999999999999987665443
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.93 E-value=0.091 Score=40.54 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s 116 (372)
+.....|||||+|-+..-+...+. .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456799999999954444433333 57888863
No 297
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.92 E-value=0.24 Score=48.74 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred CEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.+|+-+|.|.|-+....++. ..-++++++-+|.++-....+.- ..+..+++++..|++....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~---------~~W~~~Vtii~~DMR~w~a---- 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF---------ECWDNRVTIISSDMRKWNA---- 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch---------hhhcCeeEEEeccccccCC----
Confidence 46788899999876655442 22368999999999887766422 3456689999999987663
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+....|++++-..=. |.+-+--...|.-+.+.|||+|..|
T Consensus 436 -p~eq~DI~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 436 -PREQADIIVSELLGS--FGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred -chhhccchHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEc
Confidence 457899998742111 1222223468889999999999876
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.89 E-value=0.5 Score=44.81 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=57.7
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=.|||. |..+..+++. +...|+++|.+++-++.|++.... .++ |..+..+.+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~---------------~vi--~~~~~~~~~ 228 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD---------------KLV--NPQNDDLDH 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc---------------EEe--cCCcccHHH
Confidence 345788999998863 4445555554 344699999999998888763220 111 111111111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.....+.+|+|+-...- ...+....+.|++||.++..
T Consensus 229 ~~~~~g~~D~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 YKAEKGYFDVSFEVSGH----------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HhccCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 11012458988754321 13566778899999998754
No 299
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.82 E-value=0.21 Score=44.49 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=47.8
Q ss_pred HhCCCC--CEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHH---HHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 80 LYARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIED---CRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 80 ~~~~~~--~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
..++++ .+|||.-||-|.++.-++..+. +|+++|-|+-+-.. +-+++....... .....+++++++|..+.
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~---~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELL---AEAMRRIQLIHGDALEY 144 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTH---HHHHHHEEEEES-CCCH
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhH---HHHHhCCEEEcCCHHHH
Confidence 344554 4999999999999998876654 89999999976444 333433210000 00123799999998763
Q ss_pred ccccccCCCCCeeEEEecccccc
Q 017369 155 HLDKVLADDAPFDICSCQFAMHY 177 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~ 177 (372)
-- .++.+||+|.+.-.+.+
T Consensus 145 L~----~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 145 LR----QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CC----CHSS--SEEEE--S---
T ss_pred Hh----hcCCCCCEEEECCCCCC
Confidence 21 15689999998766543
No 300
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.81 E-value=0.35 Score=48.40 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCCCEEEEecCCccc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc--------
Q 017369 83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-------- 153 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-------- 153 (372)
.++.+|+=+|||.=+ .+...++.....|+++|.+++-++.+++.- .++...|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG----------------A~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG----------------AEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----------------CeEEEeccccccccccch
Confidence 368999999999744 455555554458999999999999887632 2222111111
Q ss_pred ---cccc------cccCC-CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 154 ---VHLD------KVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 154 ---~~~~------~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..-. ..+.. -..+|+|+..-....- ..+..+.+++.+.+||||.++.
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~----~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGK----PAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcc----cCcchHHHHHHHhcCCCCEEEE
Confidence 0000 00000 1469999876554211 1233345999999999998764
No 301
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.60 E-value=0.29 Score=46.57 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CCcCeEE
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARL 146 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~ 146 (372)
.-+.+.++...+.+.+++...|+|.|-|......+.. +...-+|+++....-+.|.......... ...-+ -...+..
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~-~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKL-MKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHH-HHHhCCCcCceee
Confidence 3456777888889999999999999999987776653 4445788888765444333222110000 00001 1345778
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++++.........+ ....++|+++.+.. + ++...-+.++..-|++|-+++-+-
T Consensus 256 i~gsf~~~~~v~eI--~~eatvi~vNN~~F---d--p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEI--QTEATVIFVNNVAF---D--PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred cccccCCHHHHHHH--hhcceEEEEecccC---C--HHHHHhhHHHHhhCCCcceEeccc
Confidence 88887654432222 35688898887763 2 344445569999999999988554
No 302
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.40 E-value=0.79 Score=43.80 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCEEEEecCCccc-cHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCc-ccccc-c
Q 017369 83 RRGDVVLDLACGKGG-DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLD-K 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~-~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~-~ 158 (372)
.++.+|+=+|||+=+ .+..+++. +...|+.+|.++.-++.|++.... ..+..... ..... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------------~~~~~~~~~~~~~~~~ 231 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------------DVVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------------eEeecCccccHHHHHH
Confidence 345599999999844 44555543 567899999999999999986541 11111111 00000 0
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.......+|+|+-.-.. ..++..+.++++|||.+++
T Consensus 232 ~~t~g~g~D~vie~~G~----------~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 232 ELTGGRGADVVIEAVGS----------PPALDQALEALRPGGTVVV 267 (350)
T ss_pred HHhCCCCCCEEEECCCC----------HHHHHHHHHHhcCCCEEEE
Confidence 00012369999865541 2478899999999999764
No 303
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.14 E-value=0.06 Score=53.70 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=61.4
Q ss_pred hCCCCCEEEEecCCccccHHHHHHc-CCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc----c
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKA-KIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE----V 154 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~ 154 (372)
++.++..||||||.+|+++.-.... +.+ -|+|+|+-|- ...+++..++.|+.. .
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi--------------------kp~~~c~t~v~dIttd~cr~ 100 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI--------------------KPIPNCDTLVEDITTDECRS 100 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec--------------------ccCCccchhhhhhhHHHHHH
Confidence 4568899999999999998877654 333 4899999761 112344445555432 2
Q ss_pred ccccccCCCCCeeEEEecccc----ccc---CCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 155 HLDKVLADDAPFDICSCQFAM----HYS---WSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l----~~~---~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
++...+ ..-+.|+|+..++- .|. +....-....|+-+...|+.||.|+-.+
T Consensus 101 ~l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 101 KLRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred HHHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 222111 22355888765421 121 1111122345666778899999977543
No 304
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.64 E-value=1.5 Score=37.09 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=39.4
Q ss_pred EECcCcccccccccCCCCCeeEEEecccccc---------cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHY---------SWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 147 ~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
...|+.++.-.... ....||.|+.+|---- +-....-+..++..+..+|+++|.+.+|..+.
T Consensus 58 ~~VDat~l~~~~~~-~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 58 HGVDATKLHKHFRL-KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred cCCCCCcccccccc-cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34566655432111 3578999998773221 00012345788999999999999999887444
No 305
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=0.66 Score=43.84 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCccccHHHHHHc---------CCCEEEEEeCChHHHHHHHHHhcC
Q 017369 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 69 ~~~~~k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
+..|+..++.....+....++|+|.|+|.++..+++. ...+|.-|++|++..+.-++.++.
T Consensus 62 la~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 62 LAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4456666666666666788999999999988777652 255799999999999888888764
No 306
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.92 E-value=1.6 Score=40.84 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=60.8
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc-
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~- 158 (372)
.+.++.+||..|||. |..+..++.....+|++++.++...+.+++... ..+..+-. .....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~----------------~~~~~~~~-~~~~~~ 224 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA----------------DEVLNSLD-DSPKDK 224 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC----------------CEEEcCCC-cCHHHH
Confidence 356788999988763 667777777655679999999998888754221 11111111 00000
Q ss_pred -ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 -VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 -~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+..... ...+..+.+.|+++|.++..
T Consensus 225 ~~~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 00134679988753221 14677888999999998754
No 307
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.79 E-value=0.89 Score=42.19 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=75.4
Q ss_pred CEEEEecCCccccHHHHHHcC------------C---------CEEEEEeCCh--HHHHHHHHHhcCCCccc--------
Q 017369 86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADHH-------- 134 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~~------------~---------~~v~gvD~s~--~~l~~a~~~~~~~~~~~-------- 134 (372)
.+||.||.|.|.-+..++..- . -.++.|||.+ ..+......+.......
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987544443211 1 2789999986 34554444443210000
Q ss_pred ccccCCCcCeEEEECcCcccccccc--cCCCCCeeEEEecccccccCC-CHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 135 QRRKKFSFPARLICGDCYEVHLDKV--LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 135 ~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.....-..++.|.+.|+..+...+. +......++|...|+++=+|. +...-.++|.++...++||..|++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0001224578999999987664321 111236889988888865533 3456688999999999999987653
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.57 E-value=2 Score=36.96 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=71.8
Q ss_pred CCCEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....|+|+|.-.|+-++.++.. ....|+++||+-..++.+..+.. .+.|+.++..+.....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p--------------~i~f~egss~dpai~e 134 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP--------------DILFIEGSSTDPAIAE 134 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC--------------CeEEEeCCCCCHHHHH
Confidence 4578999999999977776652 23479999998766555443332 5999999887654311
Q ss_pred cc--CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 VL--ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 ~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.. ...+.--+.+|.-+-|++ +...+-|+....+|..|-++++.-
T Consensus 135 qi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 135 QIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred HHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEec
Confidence 10 012333455666677765 777888888999999999987653
No 309
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.38 E-value=1.2 Score=43.46 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCEEEEecCCccccHHHH--HHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 85 GDVVLDLACGKGGDLIKW--DKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l--~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
...++|+|.|.|...... +-. ....++.||.|..|...+...... +..+ ....-.++.+...- +|..
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~--g~~~v~~~~~~r~~---~pi~---- 270 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI--GEPIVRKLVFHRQR---LPID---- 270 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc--Cchhccccchhccc---CCCC----
Confidence 457888988876543322 222 244699999999999998887653 0000 00000011111110 1211
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHH-HHHhcCCCcEEEEEeC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGTMP 207 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-i~~~LkpgG~li~~~~ 207 (372)
....||+|+|.+.++++-... ......++ +.+..++||++++.-+
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred cccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEEec
Confidence 345699999999999875544 34444444 5567788998876544
No 310
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.30 E-value=1 Score=45.28 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCEEEEecCCccccHHHHHHc-----CCCEEEEEeCChHHHHHHHHHh
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
|+..|.|+.||+|+++...... ....++|.+....+...|+...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 5679999999999988765431 1235899999999999998874
No 311
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.29 E-value=1.5 Score=40.76 Aligned_cols=101 Identities=18% Similarity=0.068 Sum_probs=62.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc---
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--- 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--- 155 (372)
..+++.+||-+|+|+ |..+..+++. +..+|+.+|+++.-++.|++... .+...........
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga--------------~~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA--------------TVTDPSSHKSSPQELA 231 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC--------------eEEeeccccccHHHHH
Confidence 456899999999997 4444444443 66789999999999999998322 1111111111000
Q ss_pred --cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....+ ....+|+++-...++ ..++.....+++||.+++..
T Consensus 232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence 00111 224588887554443 45566678899999976654
No 312
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.25 E-value=1.5 Score=42.36 Aligned_cols=126 Identities=14% Similarity=0.134 Sum_probs=69.9
Q ss_pred HHHHHhCCCCCEEEEecCCccccHHHHHH----cC---C-CEEEEEeC----ChHHHHHHHHHhcCCCcccccccCCCcC
Q 017369 76 VLVQLYARRGDVVLDLACGKGGDLIKWDK----AK---I-GYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (372)
Q Consensus 76 ~l~~~~~~~~~~VLDlGcG~G~~~~~l~~----~~---~-~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 143 (372)
++....-...-+|+|+|.|.|.--..++. .. + -++|||+. +...++.+.+++.+.+.. -++++.
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~----lgv~fe 177 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARS----LGVPFE 177 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHH----cCccEE
Confidence 44444444667899999999974333332 21 2 25999999 888888888877643211 233333
Q ss_pred eEEE-ECcCcccccccccCCCCCeeEEEecccccccCCCH---HHHHHHHHHHHHhcCCCcEEEEE
Q 017369 144 ARLI-CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 144 ~~~~-~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.+ ..+..++.....-..++.+=+|-|.+.+|++.+.. .++...+-...+.|+|.-++++.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 3332 22333332111111235566666788889885221 12333444555678998655543
No 313
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.22 E-value=0.42 Score=44.80 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred EEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCe
Q 017369 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~f 166 (372)
+|+|+.||-|++..-+...+...+.++|+++.+.+.-+.++. ....+|+.++... .+ +. .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~-~l-~~-~~ 62 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPS-DL-PK-DV 62 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHH-HH-HH-T-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccc-cc-cc-cc
Confidence 799999999999999888887668999999998887777652 5688898877642 11 22 59
Q ss_pred eEEEecc
Q 017369 167 DICSCQF 173 (372)
Q Consensus 167 D~V~~~~ 173 (372)
|+++...
T Consensus 63 D~l~ggp 69 (335)
T PF00145_consen 63 DLLIGGP 69 (335)
T ss_dssp SEEEEE-
T ss_pred eEEEecc
Confidence 9998864
No 314
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.99 E-value=0.41 Score=43.44 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCC-CCCEEEEecCCccccHHHHHHc---------CCCEEEEEeCChHHHHHHHHHhcC
Q 017369 71 NWIKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 71 ~~~k~~l~~~~~~-~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
+|+.........+ ...+|+|+|+|+|.++..++.. ...+|+-||+|+.+.+..++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4555555555322 3479999999999988877662 124799999999999998888764
No 315
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.88 E-value=0.39 Score=45.23 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=48.8
Q ss_pred EEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCee
Q 017369 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (372)
Q Consensus 88 VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD 167 (372)
|+|+.||-|++..-+...+..-+.++|+++.+++.-+.++.. .++.+|+.++...+ -..+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~---------------~~~~~Di~~~~~~~----~~~~d 61 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN---------------KVPFGDITKISPSD----IPDFD 61 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC---------------CCCccChhhhhhhh----CCCcC
Confidence 689999999999888777765577999999988887776641 33567777655321 13578
Q ss_pred EEEecc
Q 017369 168 ICSCQF 173 (372)
Q Consensus 168 ~V~~~~ 173 (372)
+++...
T Consensus 62 vl~gg~ 67 (315)
T TIGR00675 62 ILLGGF 67 (315)
T ss_pred EEEecC
Confidence 887754
No 316
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.17 E-value=3 Score=43.54 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=61.0
Q ss_pred CCCCEEEEecCCccccHHHHHH-c-------C-----CCEEEEEeCCh---HHHHHHHHHhcCCCccc---c-c----cc
Q 017369 83 RRGDVVLDLACGKGGDLIKWDK-A-------K-----IGYYVGIDIAE---GSIEDCRTRYNGDADHH---Q-R----RK 138 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~-~-------~-----~~~v~gvD~s~---~~l~~a~~~~~~~~~~~---~-~----~~ 138 (372)
.+.-+|||+|-|+|........ . . .-+++++|..+ +.+..+.+.+....... . . ..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457999999999984433321 1 1 12688999644 33333322211100000 0 0 00
Q ss_pred CC--------CcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHH-HHHHHHHHHHhcCCCcEEEEE
Q 017369 139 KF--------SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 139 ~~--------~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~i~~~LkpgG~li~~ 205 (372)
++ ...+++..+|+.+.-- . ....||+++....--.- +++- -..+|+.++++++|||.+.--
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~-~---~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLP-Q---LDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHH-h---ccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 10 1245566788764211 0 12569999875321100 0010 157999999999999988633
No 317
>PRK11524 putative methyltransferase; Provisional
Probab=90.07 E-value=1 Score=41.70 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=39.4
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEeccc--c--ccc-----CCCH---HHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFA--M--HYS-----WSTE---ARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~--l--~~~-----~~~~---~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...++++|+.+.. ..+ ++++||+|++.-- + .+. +... .-....+.++.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l--~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTEL--KKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHH--Hhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3567899987742 111 5689999999532 1 100 0000 1235788999999999999887543
No 318
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.04 E-value=3.8 Score=38.63 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=56.7
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...+++.+||=.|+|. |..+..+++.....+++++.+++-++.|++.... .++ |..+.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~---------------~vi--~~~~~---- 219 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA---------------SAG--GAYDT---- 219 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc---------------eec--ccccc----
Confidence 4567889999999864 3344555555445799999999888887764321 111 11111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+++..-.. ...+....+.|++||.+++.
T Consensus 220 ---~~~~~d~~i~~~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 220 ---PPEPLDAAILFAPA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ---CcccceEEEECCCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 12357866532211 13577788999999998653
No 319
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.79 E-value=0.93 Score=45.38 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCCEEEEecCCcc-ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc---------
Q 017369 84 RGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------- 153 (372)
Q Consensus 84 ~~~~VLDlGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--------- 153 (372)
++.+||=+|||.= ..+..++......|+++|.++..++.++. +. ..++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence 5689999999974 44445555444579999999998877765 22 1222222110
Q ss_pred --c--ccc----ccc-CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 154 --V--HLD----KVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 154 --~--~~~----~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+ ++. ..+ ..-..+|+|++.-.+.-- ..+.-+.+++.+.+|||+.++
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~----~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK----PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC----CCCeeehHHHHhhCCCCCEEE
Confidence 0 000 000 012569999876543321 223346778899999998865
No 320
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.65 E-value=3.2 Score=32.27 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEE
Q 017369 93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169 (372)
Q Consensus 93 cG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V 169 (372)
||.|..+..+++ .....|+.+|.+++.++.++... +.++.+|..+....... .-..+|.|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v 66 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV 66 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence 444555555543 33347999999999988876542 56889999875432221 23578877
Q ss_pred EecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
++... .+.....+....+.+.|...++..+.+.+.
T Consensus 67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 76432 134445556666778888899888877653
No 321
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.90 E-value=1.3 Score=37.97 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCC-EEEEecCCccccHHHHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc-
Q 017369 84 RGD-VVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL- 160 (372)
Q Consensus 84 ~~~-~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~- 160 (372)
++. .|+.||||-=.....+.... ...++-+|. |++++.-++.+..... ....+.+++..|+.+..+.+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~------~~~~~~~~v~~Dl~~~~~~~~L~ 149 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA------RPPANYRYVPADLRDDSWIDALP 149 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH------HHHEESSEEES-TTSHHHHHHHH
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc------cCCcceeEEeccccchhhHHHHH
Confidence 444 89999998755444444332 335666665 4456555555543211 0011345688998864432222
Q ss_pred ---CCCCCeeEEEecccccccCCCHHHHHHHHHHH
Q 017369 161 ---ADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (372)
Q Consensus 161 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i 192 (372)
......-++++-.++.|+ +.+....+|+.+
T Consensus 150 ~~g~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i 182 (183)
T PF04072_consen 150 KAGFDPDRPTLFIAEGVLMYL--SPEQVDALLRAI 182 (183)
T ss_dssp HCTT-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred HhCCCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence 134667788899999998 777788887765
No 322
>PRK13699 putative methylase; Provisional
Probab=88.69 E-value=1.7 Score=38.78 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred EEEECcCccc--ccccccCCCCCeeEEEecccc----cccCC-------CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 145 RLICGDCYEV--HLDKVLADDAPFDICSCQFAM----HYSWS-------TEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 145 ~~~~~D~~~~--~~~~~~~~~~~fD~V~~~~~l----~~~~~-------~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
+++++|+.+. .+ +++++|+|+..--. .+... ..+-....+.+++++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5678888654 33 67889998886211 10000 01224678899999999999887543
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.95 E-value=2.7 Score=39.86 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=55.4
Q ss_pred CCCCCEEEEecCCccc-cHHHHHHc--CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 82 ARRGDVVLDLACGKGG-DLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~-~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++.+||=+|||.=+ .+..+++. +..+|+++|.+++-++.|+. +. ... ..+ +..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~-~~~--~~~--- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETY-LID--DIP--- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------cee-ehh--hhh---
Confidence 4678999999987533 34455543 34579999999988877764 21 000 001 111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
....+|+|+-.-.-. .....+....+.|++||.+++
T Consensus 219 ---~~~g~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 219 ---EDLAVDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred ---hccCCcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEE
Confidence 122488887533210 012467788889999999764
No 324
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=87.86 E-value=0.49 Score=43.15 Aligned_cols=39 Identities=21% Similarity=0.051 Sum_probs=31.7
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHH
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l 120 (372)
...+.+|||+|||.|.........+...+...|++.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 346899999999999887777666656788999988776
No 325
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.49 E-value=25 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=29.4
Q ss_pred eeeehHHHHHHHHHcCcEEEEecChhHHHHHHhCChh
Q 017369 265 WIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYLKKPE 301 (372)
Q Consensus 265 ~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~~~~~ 301 (372)
...+.+..++-+.++|++-|...++.++|+.+++..+
T Consensus 254 ~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~E 290 (335)
T KOG2918|consen 254 TYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAE 290 (335)
T ss_pred hcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHH
Confidence 3556777778888999999999999999986665433
No 326
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.43 E-value=3.3 Score=38.90 Aligned_cols=95 Identities=23% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++... -.++. .....+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~---------------~~vi~--~~~~~~~~~~~ 227 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA---------------DETVN--LARDPLAAYAA 227 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC---------------CEEEc--CCchhhhhhhc
Confidence 788999998875 5566666665443 78999999888876654211 01111 11100101010
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+|+..... ...++.+.+.|+++|.++..
T Consensus 228 ~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 228 DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 12458999854331 13467788999999998743
No 327
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.41 E-value=7.9 Score=35.03 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCEEEEecCCccccHHHHH---Hc---CCCEEEEEeCChH--------------------------HHHHHHHHhcCCCc
Q 017369 85 GDVVLDLACGKGGDLIKWD---KA---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGDAD 132 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~---~~---~~~~v~gvD~s~~--------------------------~l~~a~~~~~~~~~ 132 (372)
..-|+|+||-.|+.+..+. .. ...+++++|.=+. .++..++++...
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~-- 152 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY-- 152 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT--
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc--
Confidence 4579999999998654432 21 2335888885332 223333333221
Q ss_pred ccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.-...++.++.|.+.+. ++.. +...+-++.+-.-+. +.....|..++..|.|||++++.-.+.
T Consensus 153 -----gl~~~~v~~vkG~F~dT-Lp~~--p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 153 -----GLLDDNVRFVKGWFPDT-LPDA--PIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -----TTSSTTEEEEES-HHHH-CCC---TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred -----CCCcccEEEECCcchhh-hccC--CCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 11245799999988552 2111 233444443333332 567889999999999999999876554
No 328
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.28 E-value=1.3 Score=35.18 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=54.2
Q ss_pred ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--ccccccCCCCCeeEEEec
Q 017369 95 KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKVLADDAPFDICSCQ 172 (372)
Q Consensus 95 ~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~~fD~V~~~ 172 (372)
.|..+..+++....+|+++|.++.-++.+++... ..++..+-.+. .+.+ ......+|+|+-.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~-~~~~~~~d~vid~ 65 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIRE-LTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHH-HTTTSSEEEEEES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------ccccccccccccccccc-ccccccceEEEEe
Confidence 4666777777655899999999999999876442 12222221110 0001 1133589999754
Q ss_pred ccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-.. ...++....+|+|+|.+++.-
T Consensus 66 ~g~----------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 66 VGS----------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SSS----------HHHHHHHHHHEEEEEEEEEES
T ss_pred cCc----------HHHHHHHHHHhccCCEEEEEE
Confidence 331 257788889999999987543
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.18 E-value=5.2 Score=35.76 Aligned_cols=96 Identities=26% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc--
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-- 159 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-- 159 (372)
.++.+||..|+|. |..+..++.....++++++.++...+.++.... ..++ +.........
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---------------~~~~--~~~~~~~~~~~~ 195 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---------------DHVI--DYKEEDLEEELR 195 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---------------ceec--cCCcCCHHHHHH
Confidence 6789999999986 666666666555689999999887777754321 0111 1111110000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+.+|+|+....-. ..+..+.+.|+++|.++..
T Consensus 196 ~~~~~~~d~vi~~~~~~----------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 196 LTGGGGADVVIDAVGGP----------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HhcCCCCCEEEECCCCH----------HHHHHHHHhcccCCEEEEE
Confidence 01245799998543210 3456677889999998754
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.98 E-value=4.5 Score=38.44 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=54.9
Q ss_pred CCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeC---ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
..++.+||=+|||. |..+..+++....+|++++. ++.-++.+++.. +..+ +..+....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~G----------------a~~v--~~~~~~~~ 231 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELG----------------ATYV--NSSKTPVA 231 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC----------------CEEe--cCCccchh
Confidence 35788999999875 44555565554447999987 666666665421 1111 11111100
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+ ....+.+|+|+-...- ...+....+.|++||.+++
T Consensus 232 ~-~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 232 E-VKLVGEFDLIIEATGV----------PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred h-hhhcCCCCEEEECcCC----------HHHHHHHHHHccCCcEEEE
Confidence 0 0012468988754331 1356778899999998764
No 331
>PTZ00357 methyltransferase; Provisional
Probab=86.95 E-value=2.7 Score=43.16 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=62.4
Q ss_pred CEEEEecCCccccHHHHHHc----CC-CEEEEEeCChHHHHHHHHHhc-CCCcccccccCCCcCeEEEECcCccccccc-
Q 017369 86 DVVLDLACGKGGDLIKWDKA----KI-GYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~- 158 (372)
..|+-+|+|.|-+....++. +. -+|++||-++..+.....+.. ...+.. ...-.+..++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n-~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ-LAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc-ccccCCCeEEEEeCcccccccccc
Confidence 46899999999876665542 22 269999999765544444432 111100 00011346999999999865321
Q ss_pred --cc---CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCC----CcE
Q 017369 159 --VL---ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP----GGT 201 (372)
Q Consensus 159 --~~---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp----gG~ 201 (372)
.. ...+++|+||+-..=. |.+-+---+.|..+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 00 0114799998732110 11112223456666666665 665
No 332
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.93 E-value=0.55 Score=45.12 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=51.1
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE 153 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~ 153 (372)
..++|..|.|+.||-|-+...++..+ +.|++.|+++++++..+.+..- +++... ++.+..|+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~l--------Nkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKL--------NKVDPSAIEIFNMDAKD 310 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccc--------cccchhheeeecccHHH
Confidence 34789999999999999999887665 6999999999999999988763 333333 7777777654
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.69 E-value=3.7 Score=37.63 Aligned_cols=98 Identities=16% Similarity=0.029 Sum_probs=55.3
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=+|+|. |..+..+++. +...|+++|.++.-++.|++.... .++..+-.......
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------------~~i~~~~~~~~~~~ 181 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT---------------ALAEPEVLAERQGG 181 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc---------------EecCchhhHHHHHH
Confidence 345788999998864 3344455554 443589999999888777653210 11110000000000
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. ....+|+|+-...- ...+..+.+.|+++|.++.
T Consensus 182 ~~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 182 LQ-NGRGVDVALEFSGA----------TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred Hh-CCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEE
Confidence 00 23468988753221 1356777889999999874
No 334
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.62 E-value=2.6 Score=41.82 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
..+++|+.||-|++..-+...+...|.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4699999999999999887777756889999998887776665
No 335
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=86.30 E-value=1.7 Score=40.22 Aligned_cols=101 Identities=14% Similarity=0.287 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHhCCCCCE--EEEecCCccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC
Q 017369 67 KKLNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (372)
Q Consensus 67 ~~~~~~~k~~l~~~~~~~~~~--VLDlGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 143 (372)
-++-.|+..+|..-....+.. =+|||.|...+-..+...... ..+++|+....+..|+.+..+ .++...
T Consensus 83 ~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~q--------n~lss~ 154 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQ--------NNLSSL 154 (419)
T ss_pred hhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccc--------cccccc
Confidence 356678877776543333333 378887775433333222233 478999999999999998875 344555
Q ss_pred eEEEECcCcccccccccC--CCCCeeEEEecccc
Q 017369 144 ARLICGDCYEVHLDKVLA--DDAPFDICSCQFAM 175 (372)
Q Consensus 144 ~~~~~~D~~~~~~~~~~~--~~~~fD~V~~~~~l 175 (372)
+.+++....+..+.+.+. ++..||.+.|+--+
T Consensus 155 ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 155 IKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred eeeEEecchhhcchhhhccCccceeeEEecCCch
Confidence 666655433222211110 23468888887543
No 336
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.27 E-value=2.1 Score=40.54 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
..+++|+.||-|++..-+...+..-+.++|+++.+++.-+.+... ..++..|+........ ...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~--~~~ 66 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEAL--RKS 66 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhc--ccc
Confidence 358999999999999888777775688999999999888877651 3456666665443111 111
Q ss_pred CeeEEEecc
Q 017369 165 PFDICSCQF 173 (372)
Q Consensus 165 ~fD~V~~~~ 173 (372)
.+|+++...
T Consensus 67 ~~DvligGp 75 (328)
T COG0270 67 DVDVLIGGP 75 (328)
T ss_pred CCCEEEeCC
Confidence 789998765
No 337
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.80 E-value=1.6 Score=42.17 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=49.7
Q ss_pred cCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 142 ~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.++.++.+++.+.-- . . +++++|.++.+-.+.|+ +.+...+.++++.+.++|||+++.-.
T Consensus 275 drv~i~t~si~~~L~-~-~-~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR-R-L-PPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHH-h-C-CCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 578999988876421 1 1 57899999999999998 77899999999999999999998654
No 338
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.51 E-value=2.5 Score=40.27 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=32.6
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
+-..|+|+|.|.|.++..+.-...-.|++||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 557899999999987776655545479999999877766654
No 339
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.24 E-value=2.6 Score=40.73 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
..+.+.++++||-|++|-. ..+.++..++.+|++||+++..+...+-+.
T Consensus 29 ~aL~i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 3456789999999966554 555556677789999999998877655443
No 340
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.04 E-value=3.2 Score=38.56 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=69.4
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
+..+|.-||.|. |..+.+++....+.|+-+|+|..-+.+...-+. .++...-.+..++.. .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----A 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----H
Confidence 346788888885 666777776667789999999888777766553 245555555444332 2
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
-...|+|+..--+-- ...+.-..+++.+.||||++++
T Consensus 229 v~~aDlvIgaVLIpg----akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 229 VKKADLVIGAVLIPG----AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred hhhccEEEEEEEecC----CCCceehhHHHHHhcCCCcEEE
Confidence 367899987654432 3567788899999999999876
No 341
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.00 E-value=5.1 Score=38.39 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=56.1
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
.+.++.+||=.|+|. |..+..+++.... .|+++|.++.-++.+++... ..++..+-.+. .+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~i 252 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA---------------TATVNAGDPNAVEQV 252 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC---------------ceEeCCCchhHHHHH
Confidence 456788999999864 4445555554443 69999999998888865321 11111110000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. . ..+.+|+|+-.-.- ...+....+.|++||.++.
T Consensus 253 ~~-~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 253 RE-L-TGGGVDYAFEMAGS----------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred HH-H-hCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEE
Confidence 00 0 12368988753221 1355667788999999764
No 342
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.92 E-value=5.6 Score=37.37 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-c
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H 155 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~ 155 (372)
.....++.+||=+|+|. |..+..+++....+ |+++|.+++.++.+++... ..++...-.+. .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga---------------~~~i~~~~~~~~~ 222 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA---------------DFVINSGQDDVQE 222 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEEcCCcchHHH
Confidence 34556789999998763 33444555543445 9999999988887755321 01111110000 0
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
+.+.. ....+|+|+-...- ...+....+.|+++|.+++.
T Consensus 223 ~~~~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 223 IRELT-SGAGADVAIECSGN----------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HHHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 00001 23469999753221 13456667889999998743
No 343
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=83.86 E-value=3.2 Score=38.35 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcC
Q 017369 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129 (372)
Q Consensus 74 k~~l~~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 129 (372)
...+.. ...++..|||.-+|+|..+...... ....+|+|+++..++.+.+|+..
T Consensus 213 ~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 213 ERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHh-cCCCCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHh
Confidence 334333 6789999999999999877766544 44799999999999999999874
No 344
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.30 E-value=4.5 Score=39.48 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=53.9
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+|+=+|||. |......++....+|+.+|.++.-++.|+... .... +..+ .
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e-~------ 254 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEE-A------ 254 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHH-H------
Confidence 4789999999997 44444455444458999999988777765421 1111 1111 1
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHH-HHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-i~~~LkpgG~li~~ 205 (372)
-..+|+|+..-.. ..++.. ..+.+|+||.++..
T Consensus 255 -v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 255 -VKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -HcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence 1357999864321 134444 47899999998643
No 345
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.61 E-value=7.5 Score=36.99 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=56.5
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=.|||. |..+..+++.... .|+++|.++.-++.+++... -.++. ..+.....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga---------------~~~i~--~~~~~~~~ 235 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA---------------THTVN--SSGTDPVE 235 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEEc--CCCcCHHH
Confidence 456889999998864 4445555554443 59999999988888854321 11111 11111000
Q ss_pred ---ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 ---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+-.-.- ...+....+.|++||.+++.
T Consensus 236 ~i~~~~~~~g~d~vid~~g~----------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 236 AIRALTGGFGADVVIDAVGR----------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHHHHhCCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 00022468988753221 13456677899999998753
No 346
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.27 E-value=16 Score=34.08 Aligned_cols=97 Identities=18% Similarity=0.078 Sum_probs=58.5
Q ss_pred HhCCCCCEEEEecCC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....++.+||-.||| .|..+..+++.....+++++.+++.++.+++... ..++...-.... ..
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~-~~ 221 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDE-QA 221 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchH-Hh
Confidence 345678899999987 5666666666555589999999988887744221 011111100000 00
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+++....- ...+..+.+.|+++|.++..
T Consensus 222 ---~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 ---AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ---ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence 12468988753221 13567778899999988754
No 347
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.05 E-value=8.7 Score=35.84 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=58.0
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||-.|+|. |..+..+++..... +++++.+++..+.+++... ..++..+-.+....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~ 219 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA---------------TETVDPSREDPEAQ 219 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------eEEecCCCCCHHHH
Confidence 3456788999998753 55556666554444 8899999988877754321 11221111110000
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.......+|+|+....- ...+..+.+.|+++|.++..
T Consensus 220 -~~~~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 220 -KEDNPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred -HHhcCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 00023569999854221 14567778889999998743
No 348
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.91 E-value=45 Score=31.46 Aligned_cols=181 Identities=11% Similarity=0.023 Sum_probs=90.2
Q ss_pred CEEEEecCCcc--ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC-----cCeEEEECcCccccccc
Q 017369 86 DVVLDLACGKG--GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-----FPARLICGDCYEVHLDK 158 (372)
Q Consensus 86 ~~VLDlGcG~G--~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~ 158 (372)
.+|-=||+|+= +++..++..+ -.|+.+|.+++.++.++.++........ ..+.. .++.+. .|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~-~~l~~----- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALE-RQGLAPGASPARLRFV-ATIEA----- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCChhhHHhhceec-CCHHH-----
Confidence 57888999852 2444444444 3899999999988877665431100000 00000 111211 11110
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhh
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFA 238 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~ 238 (372)
.-...|+|+- .+.++.+-...++.++.+.++|+..+..++.. -....+.+.. .....+.-.+|-+.
T Consensus 80 ---av~~aDlViE-----avpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~--l~~s~la~~~--~~p~R~~g~HffnP-- 145 (321)
T PRK07066 80 ---CVADADFIQE-----SAPEREALKLELHERISRAAKPDAIIASSTSG--LLPTDFYARA--THPERCVVGHPFNP-- 145 (321)
T ss_pred ---HhcCCCEEEE-----CCcCCHHHHHHHHHHHHHhCCCCeEEEECCCc--cCHHHHHHhc--CCcccEEEEecCCc--
Confidence 1145677764 33455566778899999999998744433331 1222333211 11122223332211
Q ss_pred hcccCCCCCceeeEEEEecccccCce-eeeehHHHHHHHHHcCcEEEEe-cChhHHHHHHhCCh
Q 017369 239 DKKFKSSRPFGIQYKFHLEDAVDCPE-WIVPFHIFKSLAEEYDLELVFV-KNSHEFVHEYLKKP 300 (372)
Q Consensus 239 ~~~f~~~~~~g~~y~~~l~~~~~~~e-~l~~~~~l~~l~~~~Gf~~v~~-~~~~~~~~~~~~~~ 300 (372)
+.-. .+-+.+.-+. ---..+...++++..|.+.|.. ++.+-|+...+..+
T Consensus 146 --------~~~~----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a 197 (321)
T PRK07066 146 --------VYLL----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEA 197 (321)
T ss_pred --------cccC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHH
Confidence 1100 1111111000 0112345678888999999887 67888876655333
No 349
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.78 E-value=9.5 Score=34.60 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
+.++..-.|+|...|+++..+.+.+- .|++||-.+ |.+. ... ...++-...|-....-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma~s---L~d------------tg~v~h~r~DGfk~~P----- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MAQS---LMD------------TGQVTHLREDGFKFRP----- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccch-hhhh---hhc------------ccceeeeeccCccccc-----
Confidence 36899999999999999999987655 899999754 2221 111 2246666667655431
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 199 (372)
.....|-.+|..+ +.+..+-.-+...|..|
T Consensus 267 ~r~~idWmVCDmV--------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 267 TRSNIDWMVCDMV--------EKPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCCceEEeehh--------cCcHHHHHHHHHHHHcc
Confidence 2467888888765 33445555555555544
No 350
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=80.70 E-value=5 Score=35.33 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 156 (372)
.-....|.+||.|.|+.+..++.++..++..++++...+.-.+...+. .+.+..++++|+.....
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA----------a~~~~~IHh~D~LR~~I 112 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA----------APGKLRIHHGDVLRFKI 112 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc----------CCcceEEeccccceehH
Confidence 335689999999999999999988888888888887665544333221 02356667777765544
No 351
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.54 E-value=13 Score=33.69 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=56.8
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||-.|||. |..+..++...... |++++.+++..+.+++.... -.+... .....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~--------------~~~~~~--~~~~~- 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA--------------DPVAAD--TADEI- 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC--------------cccccc--chhhh-
Confidence 3456788999998875 55556665554445 99999999888776653200 000100 00001
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+|+|+..... ...+....+.|+++|.++..
T Consensus 156 ----~~~~~d~vl~~~~~----------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 156 ----GGRGADVVIEASGS----------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ----cCCCCCEEEEccCC----------hHHHHHHHHHhcCCcEEEEE
Confidence 23568988753221 13567778889999998743
No 352
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.50 E-value=12 Score=35.49 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=59.4
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC----cCccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG----DCYEV 154 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----D~~~~ 154 (372)
.+.++.+||=.|+ |.|..+..+++....+|++++.+++..+.+++.+.. -.++.. +..+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------------~~vi~~~~~~~~~~- 219 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------------DEAFNYKEEPDLDA- 219 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------------CEEEECCCcccHHH-
Confidence 4678899999998 356677777776556899999998877777643320 111211 1110
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... . ..+.+|+|+-... ...+....+.|++||.++..
T Consensus 220 ~i~~-~-~~~gvD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 220 ALKR-Y-FPEGIDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHH-H-CCCCcEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence 0000 1 1246898874322 13567788899999998743
No 353
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.49 E-value=11 Score=32.27 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=58.5
Q ss_pred EEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCccccc
Q 017369 87 VVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (372)
Q Consensus 87 ~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~ 156 (372)
+|.=+|+|+=+ ++..++.. ...|+.+|.+++.++.+++++........+...+ ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 46668888633 33333333 4489999999999999888765311100011111 11333 23343321
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
...|+|+- -+.++.+-...+++++.+.+.|+-.|.-.+.
T Consensus 77 -------~~adlViE-----ai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 -------VDADLVIE-----AIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -------CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred -------hhhheehh-----hccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 25777753 3345667789999999999999987765553
No 354
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.77 E-value=11 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=30.9
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHH
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 125 (372)
...++.+||=.|||. |..+..+++.... .|++++.+++-++.+++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 456788999998865 3344455554333 48899999988887754
No 355
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.61 E-value=14 Score=29.01 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 85 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
..+|.|+|-|-=....+.++.....++++|+.+. .| ...+.+...|+.+.... --.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a-----------------~~g~~~v~DDitnP~~~----iY~ 69 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TA-----------------PEGLRFVVDDITNPNIS----IYE 69 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cC-----------------cccceEEEccCCCccHH----Hhh
Confidence 3499999998765555555444457999999874 11 12478899998875431 124
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg 199 (372)
..|+|.+. .+..++...+-.+++.++-.
T Consensus 70 ~A~lIYSi-------RpppEl~~~ildva~aVga~ 97 (129)
T COG1255 70 GADLIYSI-------RPPPELQSAILDVAKAVGAP 97 (129)
T ss_pred Cccceeec-------CCCHHHHHHHHHHHHhhCCC
Confidence 57777642 34466777777777766544
No 356
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.23 E-value=15 Score=33.66 Aligned_cols=105 Identities=17% Similarity=0.015 Sum_probs=66.7
Q ss_pred CCCEEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.|..|+-+|- .-..++.++. ..+.+|..+||++..++.-.+..++.+ ..+++.+..|+.+ |+++.+
T Consensus 152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---------~~~ie~~~~Dlr~-plpe~~-- 218 (354)
T COG1568 152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---------YNNIEAFVFDLRN-PLPEDL-- 218 (354)
T ss_pred CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---------ccchhheeehhcc-cChHHH--
Confidence 4667888883 2222333332 345579999999999988777766432 2248888889876 443222
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCC---cEEEEEe
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGTM 206 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkpg---G~li~~~ 206 (372)
...||+.+..-. ++...++.++..=...||.- |+|-+|.
T Consensus 219 ~~kFDvfiTDPp-----eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 219 KRKFDVFITDPP-----ETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred HhhCCeeecCch-----hhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 378999986432 12355677777766777665 6666655
No 357
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=78.83 E-value=7.1 Score=33.25 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |......++....+|+++|.+......+... .+ ...++.++-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~----------------~~--~~~~l~ell------- 89 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF----------------GV--EYVSLDELL------- 89 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------TE--EESSHHHHH-------
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc----------------cc--eeeehhhhc-------
Confidence 588999999986 5555555555556899999998765522211 11 222332211
Q ss_pred CCCeeEEEecccc----cccCCCHHHHHHHHHHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAM----HYSWSTEARARRALANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l----~~~~~~~~~~~~~l~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
...|+|++...+ ++++. .+....||+|.+||= .+.+.+.+++.++.
T Consensus 90 -~~aDiv~~~~plt~~T~~li~---------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 90 -AQADIVSLHLPLTPETRGLIN---------AEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -HH-SEEEE-SSSSTTTTTSBS---------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred -chhhhhhhhhccccccceeee---------eeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 458888876543 23322 456778999887773 34567778877765
No 358
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=78.23 E-value=15 Score=34.43 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=59.3
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
..+.++.+||-.|+|. |..+..+++....+++++..+++..+.+++... ..++...-... .+
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~---------------~~v~~~~~~~~~~~l 219 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA---------------DDTINVGDEDVAARL 219 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC---------------CEEecCcccCHHHHH
Confidence 3556888999998764 566666766655678999888888777754321 11111110000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... +...+|+++....- ...+..+.+.|+++|.++..
T Consensus 220 ~~~~-~~~~vd~vld~~g~----------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 220 RELT-DGEGADVVIDATGN----------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HHHh-CCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 0111 33568999764221 13467778899999998743
No 359
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=77.99 E-value=21 Score=33.29 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=58.4
Q ss_pred HhCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccc-
Q 017369 80 LYARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH- 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~- 155 (372)
....++.+||=.|. |.|..+..+++....++++++.+++..+.+++... -.++..+- ....
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa---------------~~vi~~~~~~~~~~ 198 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF---------------DVAFNYKTVKSLEE 198 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeccccccHHH
Confidence 35678899998884 45667777777655589999999888777754211 11111110 0000
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..... ..+.+|+|+-...- ..+....++|++||.++.
T Consensus 199 ~~~~~-~~~gvdvv~d~~G~-----------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 199 TLKKA-SPDGYDCYFDNVGG-----------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHHHh-CCCCeEEEEECCCH-----------HHHHHHHHHhCcCcEEEE
Confidence 00001 22468988743221 234777889999999874
No 360
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.73 E-value=55 Score=29.67 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHHcC-CCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccC
Q 017369 101 KWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW 179 (372)
Q Consensus 101 ~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~ 179 (372)
.+.+.+ ..+|+|+|.++..++.|.+..- +.-...+. + . -..+|+|+..--+
T Consensus 4 aL~~~g~~~~v~g~d~~~~~~~~a~~~g~---------------~~~~~~~~-~-~-------~~~~DlvvlavP~---- 55 (258)
T PF02153_consen 4 ALRKAGPDVEVYGYDRDPETLEAALELGI---------------IDEASTDI-E-A-------VEDADLVVLAVPV---- 55 (258)
T ss_dssp HHHHTTTTSEEEEE-SSHHHHHHHHHTTS---------------SSEEESHH-H-H-------GGCCSEEEE-S-H----
T ss_pred HHHhCCCCeEEEEEeCCHHHHHHHHHCCC---------------eeeccCCH-h-H-------hcCCCEEEEcCCH----
Confidence 344444 3589999999999988865432 11111111 1 1 1457999865433
Q ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh
Q 017369 180 STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 180 ~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
.....+++++...+++|+.++=...-...++..+.+
T Consensus 56 ---~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 56 ---SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp ---HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred ---HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 567889999999999987665433333455555554
No 361
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.49 E-value=9.2 Score=35.57 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=51.9
Q ss_pred CCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++.+||=+|||. |..+..+++. +...|+++|.++..++.|.... ++ |..+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------------~i--~~~~~------ 196 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------------VL--DPEKD------ 196 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------------cc--Chhhc------
Confidence 3567899889874 4455666654 4444778898887666554210 01 11110
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
....+|+|+-.-.- ...+..+.+.|++||.+++.
T Consensus 197 -~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 197 -PRRDYRAIYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -cCCCCCEEEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 12468988754332 13567778899999998743
No 362
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=77.26 E-value=13 Score=35.48 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=51.9
Q ss_pred CCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE-CcCcccccccc
Q 017369 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~ 159 (372)
..++.+||-.|||. |..+..+++.....+++++.++.....+.+.+. . ..++. .+.. .+..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~G-------------a-~~vi~~~~~~--~~~~- 243 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLG-------------A-DSFLVSTDPE--KMKA- 243 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCC-------------C-cEEEcCCCHH--HHHh-
Confidence 35788998898864 445555555555578888887754433322221 0 11111 1100 1111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+|+-...- ...+....+.|++||.++..
T Consensus 244 --~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 244 --AIGTMDYIIDTVSA----------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred --hcCCCCEEEECCCC----------HHHHHHHHHHhcCCcEEEEe
Confidence 11258888743221 13567778899999997743
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=77.02 E-value=21 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=33.1
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 125 (372)
..+.++.+||=+|||. |..+..+++.... .|+++|.+++-++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3467889999999864 3344555554444 69999999988888865
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.18 E-value=17 Score=34.32 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=34.7
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
....++.+||=.|||. |..+..+++.....++++|.+++.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3456789999999965 555566666544579999999998888865
No 365
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.91 E-value=21 Score=32.47 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=60.5
Q ss_pred CCCCCEEEEecCCccccHHHHHHc------CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc
Q 017369 82 ARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 155 (372)
+.++..++|+|||.|.++..+... ....++.||-...-. .+..+... ......+.=+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~--------~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRK--------DESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhc--------cCCCCceEEEEEEeeccc
Confidence 467789999999999887776653 234689999865222 22222221 110124555677877777
Q ss_pred cccccCCC-CCeeEEEecccccccCCCHHHHHHHHHHHHHhcC-------CCcEEEEEe
Q 017369 156 LDKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALLR-------PGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-------pgG~li~~~ 206 (372)
+....... ..-.+|. .--|+.....| -.|+-+.+..+ ..|.++...
T Consensus 87 l~~~~~~~~~~~~vv~---isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~C 140 (259)
T PF05206_consen 87 LSKLPELQNDEKPVVA---ISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAPC 140 (259)
T ss_pred hhhcccccCCCCcEEE---EEccccccchh--HHHHhhccCccccccCCccCeEEEEeC
Confidence 64443211 1222333 22345454444 45666665554 567666554
No 366
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=74.88 E-value=5.1 Score=39.43 Aligned_cols=114 Identities=19% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCEEEEecCCccccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--ccccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVL 160 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~ 160 (372)
.+.++|-+|-|.|.+...+... +...++++++.++|++.|.+.+.-.. ..+..+...|..+.- ..+.-
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---------~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---------SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---------hhhhhhhHhhchHHHHHHhhcc
Confidence 3567888888888877766443 44579999999999999998765211 001222223322111 01111
Q ss_pred CCCCCeeEEEecc---ccccc--CCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 161 ADDAPFDICSCQF---AMHYS--WSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 161 ~~~~~fD~V~~~~---~l~~~--~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+..||++...- -.|-+ ....--...+|..+...|.|.|.|++..
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 1346788887642 11111 1111224678999999999999998755
No 367
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=74.25 E-value=27 Score=32.71 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=56.2
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
...++.+||-.|+|. |..+..+++... ..+++++.++...+.+++... ..++...-.+. .+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~---------------~~vi~~~~~~~~~~i 228 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA---------------TDIINPKNGDIVEQI 228 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC---------------cEEEcCCcchHHHHH
Confidence 356788999987753 556666665544 478899888877776654321 11111110000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... ..+.+|+|+....- ...+....+.|+++|.++..
T Consensus 229 ~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 229 LELT-GGRGVDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHHc-CCCCCcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 0001 33579988753221 13667778899999997743
No 368
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.05 E-value=27 Score=32.37 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=58.4
Q ss_pred HhCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--
Q 017369 80 LYARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-- 155 (372)
Q Consensus 80 ~~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-- 155 (372)
....++.+||=.|. |.|..+..+++.....+++++.+++..+.+++... -.++...-.+..
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga---------------~~vi~~~~~~~~~~ 203 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF---------------DAVFNYKTVSLEEA 203 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCccHHHH
Confidence 34568889998874 45667777777655589999999888877765211 111211111100
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+.. . ....+|+|+-... ...+....+.|+++|.++.
T Consensus 204 v~~-~-~~~gvd~vld~~g-----------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 204 LKE-A-APDGIDCYFDNVG-----------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHH-H-CCCCcEEEEECCC-----------HHHHHHHHHhhccCCEEEE
Confidence 000 1 1246898874322 1346778889999999864
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.53 E-value=28 Score=32.71 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=58.3
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-- 154 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-- 154 (372)
.....++.+||-.|+|. |..+..+++..... +++++-+++..+.+++... -.++..+-...
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~vi~~~~~~~~~ 221 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA---------------THTVNVRTEDTPE 221 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC---------------cEEeccccccchh
Confidence 34567888998888765 55566666654445 8899888887777654211 01111111000
Q ss_pred ---ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 155 ---HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 155 ---~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.... ....+|+|+-.... ...+....+.|+++|.++..
T Consensus 222 ~~~~~~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 222 SAEKIAELL-GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHHHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 000111 33569999854221 12567778899999998743
No 370
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.21 E-value=33 Score=35.61 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=64.7
Q ss_pred CCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 85 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
..+|+=+|||. |......+....-.++.+|.+++.++.+++. ....+.+|+.+...-+.. .-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----------------g~~v~~GDat~~~~L~~a-gi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----------------GMKVFYGDATRMDLLESA-GA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----------------CCeEEEEeCCCHHHHHhc-CC
Confidence 36788888886 4444444444444799999999999888652 256789999875432111 22
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
+..|++++... + ++....+-...+.+.|.-.++....+...
T Consensus 463 ~~A~~vvv~~~------d-~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 463 AKAEVLINAID------D-PQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred CcCCEEEEEeC------C-HHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 47888776322 2 23334444555666788777777766643
No 371
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.17 E-value=42 Score=31.00 Aligned_cols=92 Identities=18% Similarity=0.072 Sum_probs=56.0
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....++.+||=.|+|. |..+..+++.....+++++.+++..+.+++ +. +.. ..+.... .
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g---------------~~~-~~~~~~~-~-- 210 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG---------------VET-VLPDEAE-S-- 210 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC---------------CcE-EeCcccc-c--
Confidence 3456788999887643 334444454444469999999988888876 32 110 0111111 1
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
....+|+|+....- ...+..+.+.|+++|.++.
T Consensus 211 ---~~~~~d~vid~~g~----------~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 ---EGGGFDVVVEATGS----------PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ---cCCCCCEEEECCCC----------hHHHHHHHHHhhcCCEEEE
Confidence 34569998754211 1355677788999999875
No 372
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.82 E-value=48 Score=28.99 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=58.8
Q ss_pred CCCEEEEecCCcc--ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc--
Q 017369 84 RGDVVLDLACGKG--GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-- 159 (372)
Q Consensus 84 ~~~~VLDlGcG~G--~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-- 159 (372)
.+.+||-.|++.| ..+...+......|++++-+++.++.+.+.... ..++.++.+|+.+..-...
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~ 72 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-----------YGNIHYVVGDVSSTESARNVI 72 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------cCCeEEEECCCCCHHHHHHHH
Confidence 3568999988643 233333323344899999988766655444331 1247778888875331000
Q ss_pred ---cCCCCCeeEEEeccccccc--CCCHH-----------HHHHHHHHHHHhcCCCcEEEEEe
Q 017369 160 ---LADDAPFDICSCQFAMHYS--WSTEA-----------RARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 160 ---~~~~~~fD~V~~~~~l~~~--~~~~~-----------~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
....+..|.++........ +...+ ....+++.+...++++|.+++..
T Consensus 73 ~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 73 EKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0011456877766543210 00001 11233555566677788766544
No 373
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.57 E-value=34 Score=35.33 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=62.9
Q ss_pred CEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|+=+|+|. |....+.+......++.+|.+++.++.+++. ....+.+|+.+...-+.. .-.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----------------g~~v~~GDat~~~~L~~a-gi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----------------GYKVYYGDATQLELLRAA-GAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----------------CCeEEEeeCCCHHHHHhc-CCc
Confidence 4677777765 3333333334444799999999999888652 256789999875432111 225
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHH
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~ 211 (372)
..|++++... + +.....+-...+.+.|...++...-+...
T Consensus 464 ~A~~vv~~~~------d-~~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 464 KAEAIVITCN------E-PEDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred cCCEEEEEeC------C-HHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 6887775322 2 22333344455667899888888877643
No 374
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=71.06 E-value=29 Score=32.81 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=60.4
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-....+.....+|+++|.++..... . +. ...++.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~----------------~~-~~~~l~el-------- 195 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----F----------------LT-YKDSVKEA-------- 195 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----h----------------hh-ccCCHHHH--------
Confidence 567899999997 433344444444589999998743210 0 01 11122111
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+ +.+....+...+...+|+|.+|+- .+.+.+.+++.+..
T Consensus 196 l~~aDiVil~lP~-----t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 196 IKDADIISLHVPA-----NKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HhcCCEEEEeCCC-----cHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 1467888764433 233344556788889999887773 34677778887765
No 375
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.03 E-value=32 Score=35.14 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=58.9
Q ss_pred CEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
.+|+=+|||. |..+.+.+......++.+|.+++.++.+++. ....+.+|+.+...-+.. .-+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----------------g~~~i~GD~~~~~~L~~a-~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----------------GIRAVLGNAANEEIMQLA-HLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----------------CCeEEEcCCCCHHHHHhc-Ccc
Confidence 5677778875 3333333333344799999999988888642 267799999874321111 225
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
.+|.+++... +..+...... ..+.+.|...++....+.+
T Consensus 481 ~a~~viv~~~------~~~~~~~iv~-~~~~~~~~~~iiar~~~~~ 519 (558)
T PRK10669 481 CARWLLLTIP------NGYEAGEIVA-SAREKRPDIEIIARAHYDD 519 (558)
T ss_pred ccCEEEEEcC------ChHHHHHHHH-HHHHHCCCCeEEEEECCHH
Confidence 7886654321 1122222333 3455678878877765553
No 376
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.99 E-value=48 Score=31.60 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=32.5
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 125 (372)
...+++.+||=+|+|. |..+..+++.... .|+++|.+++-++.+++
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3457889999998753 3344455554344 69999999998887754
No 377
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.00 E-value=43 Score=32.94 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=53.9
Q ss_pred EEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+|+=+||| ..+..++. .....|+.+|.+++.++.+++.. .+.++.+|+.+...-... .-
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~---------------~~~~~~gd~~~~~~l~~~-~~ 63 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL---------------DVRTVVGNGSSPDVLREA-GA 63 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc---------------CEEEEEeCCCCHHHHHHc-CC
Confidence 57777775 44444433 33447999999998877765422 267788888653321111 12
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
..+|.|++...- ......+....+.+.|.-.+++.+
T Consensus 64 ~~a~~vi~~~~~-------~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 64 EDADLLIAVTDS-------DETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred CcCCEEEEecCC-------hHHHHHHHHHHHHhcCCCeEEEEE
Confidence 568877764321 233444555555565555555544
No 378
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.79 E-value=42 Score=30.76 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=49.2
Q ss_pred EEEEecCCc-c-ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 87 VVLDLACGK-G-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 87 ~VLDlGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
+|.=+|+|. | .++..+...+ .+|+++|.+++.++.+..... +.....+. . .-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g~---------------~~~~~~~~---~------~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGL---------------VDEASTDL---S------LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC---------------cccccCCH---h------Hhc
Confidence 466788885 2 2344443333 479999999988877765321 11011111 0 124
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEE
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~l 202 (372)
..|+|+...-. .....+++++...++++..+
T Consensus 57 ~aDlVilavp~-------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 57 DCDLVILALPI-------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCCEEEEcCCH-------HHHHHHHHHHHHhCCCCcEE
Confidence 57888765432 44566788888888877544
No 379
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=69.53 E-value=9.8 Score=30.46 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
+..+|+|+|-|.=......+....-.|+++|+.+. .|. ..+.++.-|+.+..+. . -
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-----------------~g~~~v~DDif~P~l~-i---Y 68 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-----------------EGVNFVVDDIFNPNLE-I---Y 68 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------------------STTEE---SSS--HH-H---H
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-----------------cCcceeeecccCCCHH-H---h
Confidence 44599999999866555544433358999999985 111 2467788898874431 1 1
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChH
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~ 210 (372)
...|+|.+... ..++...+.++++.+ |.-++++.-..+
T Consensus 69 ~~a~lIYSiRP-------P~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 69 EGADLIYSIRP-------PPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp TTEEEEEEES---------TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred cCCcEEEEeCC-------ChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 47888876442 234555666666654 445666654443
No 380
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.51 E-value=1.6e+02 Score=31.25 Aligned_cols=176 Identities=12% Similarity=0.039 Sum_probs=94.2
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 155 (372)
.+|.=||+|+=+ ++..++..+ -.|+.+|.+++.++.+..+..........+..+ ..++++. .|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYA--- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH---
Confidence 578999999833 333344343 379999999999998877654211110000000 0122221 1221
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC--hHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+ +-++++.+-..+++.++.+.++|+..|.-.+.. ...+...+. ....+.-.+|
T Consensus 389 ------~~~~aDlVi-----Eav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~------~p~r~~g~Hf 451 (715)
T PRK11730 389 ------GFERVDVVV-----EAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALK------RPENFCGMHF 451 (715)
T ss_pred ------HhcCCCEEE-----ecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC------CCccEEEEec
Confidence 124567665 344566677889999999999999766544432 233332221 1222333333
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... ... .+-+.+.-+ .---..+.+.++++..|...|...+-+-|+...+
T Consensus 452 f~P~----------~~~----~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi 502 (715)
T PRK11730 452 FNPV----------HRM----PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRV 502 (715)
T ss_pred CCcc----------ccc----ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHHHH
Confidence 2211 111 111111100 0112345667888999999999888888865544
No 381
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.46 E-value=15 Score=32.58 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=56.9
Q ss_pred EEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 87 ~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
+++=+|||. |..+.+.+......|+.+|.+++.++.....- .....+++|..+...-... .-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--------------~~~~~v~gd~t~~~~L~~a-gi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE--------------LDTHVVIGDATDEDVLEEA-GIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--------------cceEEEEecCCCHHHHHhc-CCCc
Confidence 577789986 43444444344457999999998887743321 1367788998764432111 2367
Q ss_pred eeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
+|++++.-.- +....++..+...+-.-=.++..+.+.
T Consensus 67 aD~vva~t~~-------d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 67 ADAVVAATGN-------DEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred CCEEEEeeCC-------CHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 9988864321 234445555554422222345555444
No 382
>PLN02827 Alcohol dehydrogenase-like
Probab=69.41 E-value=30 Score=33.21 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=31.3
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHH
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~ 125 (372)
...++.+||-.|+|. |..+..+++. +...|+++|.+++..+.|++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 456789999998764 3344445544 44458899999988877754
No 383
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=69.39 E-value=36 Score=31.89 Aligned_cols=96 Identities=13% Similarity=-0.011 Sum_probs=56.5
Q ss_pred CCCC--CEEEEecC--CccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-
Q 017369 82 ARRG--DVVLDLAC--GKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (372)
Q Consensus 82 ~~~~--~~VLDlGc--G~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~- 155 (372)
..++ .+||=.|+ |.|..+..+++.... +|++++.+++..+.+++.+.. -.++..+-.++.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--------------~~vi~~~~~~~~~ 215 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--------------DAAINYKTDNVAE 215 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--------------cEEEECCCCCHHH
Confidence 4444 79988886 456677777766554 799999998877777654321 111211111100
Q ss_pred -cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+.. . ....+|+|+....- ..+....+.|+++|.++.
T Consensus 216 ~i~~-~-~~~gvd~vid~~g~-----------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 216 RLRE-L-CPEGVDVYFDNVGG-----------EISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHH-H-CCCCceEEEECCCc-----------HHHHHHHHHhccCCEEEE
Confidence 001 1 12569999753221 124677889999999874
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.33 E-value=21 Score=34.81 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
..+.+|+=+|||. |......++....+|+++|.++.-...|... + .. ..++.+ .+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~--------------G--~~--v~~lee-al----- 248 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD--------------G--FR--VMTMEE-AA----- 248 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc--------------C--CE--eCCHHH-HH-----
Confidence 4688999999997 4444444444455899999988544333321 1 11 112211 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHH-HHHHhcCCCcEEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpgG~li~~ 205 (372)
...|+|++.-.- ..++. .....+|+|++++..
T Consensus 249 --~~aDVVItaTG~----------~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 249 --KIGDIFITATGN----------KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred --hcCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEE
Confidence 356988763221 23444 477889999988754
No 385
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.21 E-value=53 Score=31.36 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=34.0
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~ 126 (372)
....++.+||=.|||. |..+..+++.... +|+++|.+++-++.|++.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 3457889999999864 4445555554444 799999999988888653
No 386
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=69.06 E-value=38 Score=31.68 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=55.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....++.+||=.|||. |..+..+++....+++.++.+++.++.+++ +.. ..++. ..+..+..
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------------~~~i~--~~~~~~~~ 221 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA--------------HHYID--TSKEDVAE 221 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC--------------cEEec--CCCccHHH
Confidence 3556788999998653 334444555444479999999888877744 210 11111 11111110
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.+.....+|+++.... ....+..+.+.|+++|.++..
T Consensus 222 ~~~~~~~~d~vi~~~g----------~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 222 ALQELGGAKLILATAP----------NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred HHHhcCCCCEEEECCC----------chHHHHHHHHHcccCCEEEEE
Confidence 0001135888875311 013567778899999998743
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.84 E-value=56 Score=32.10 Aligned_cols=74 Identities=14% Similarity=-0.068 Sum_probs=45.7
Q ss_pred CCCEEEEecCCcc-ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
...+|+=+|||.= ..+...+......|+.+|.+++.++.+++... .+.++.+|+.+...-... .
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~--------------~~~~i~gd~~~~~~L~~~-~ 294 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP--------------NTLVLHGDGTDQELLEEE-G 294 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC--------------CCeEEECCCCCHHHHHhc-C
Confidence 3577888888652 22222223334479999999998888776543 366788998754321111 2
Q ss_pred CCCeeEEEec
Q 017369 163 DAPFDICSCQ 172 (372)
Q Consensus 163 ~~~fD~V~~~ 172 (372)
-..+|.|++.
T Consensus 295 ~~~a~~vi~~ 304 (453)
T PRK09496 295 IDEADAFIAL 304 (453)
T ss_pred CccCCEEEEC
Confidence 3568887753
No 388
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=68.74 E-value=32 Score=32.22 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=57.0
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcc-ccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHL 156 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 156 (372)
....++.+||-.|+|. |..+..+++..... +++++-++...+.+++... ..++..+-.. ..+
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~~ 219 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA---------------DDTINPKEEDVEKV 219 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEecCccccHHHH
Confidence 3456788999998765 55666666654444 9999988877776643211 1111111000 000
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... ....+|+|+.... ....+..+.+.|+++|.++..
T Consensus 220 ~~~~-~~~~~d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 220 RELT-EGRGADLVIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHh-CCCCCCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 0011 2345999975321 123567778899999997743
No 389
>PLN02494 adenosylhomocysteinase
Probab=68.44 E-value=17 Score=36.06 Aligned_cols=89 Identities=10% Similarity=-0.044 Sum_probs=52.4
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
-.+.+|+=+|+|. |......++....+|+++|.++.-...|.... ..+ .++.+ .+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G----------------~~v--v~leE-al----- 307 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG----------------YQV--LTLED-VV----- 307 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC----------------Cee--ccHHH-HH-----
Confidence 3588999999996 33344444444458999999986544443211 111 12211 11
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
...|+|++.-.-.+ -+.......||+||+++-.-
T Consensus 308 --~~ADVVI~tTGt~~---------vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 308 --SEADIFVTTTGNKD---------IIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred --hhCCEEEECCCCcc---------chHHHHHhcCCCCCEEEEcC
Confidence 35799987433222 23367778999999987543
No 390
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=67.87 E-value=36 Score=32.34 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=51.5
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.++.+||-.|+|. |..+..+++.....+++++.+++....+.+.+.. . .++. +.....+..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-------------~-~~i~-~~~~~~~~~--- 240 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-------------D-DYLV-SSDAAEMQE--- 240 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-------------c-EEec-CCChHHHHH---
Confidence 5788898887754 4445555555445788888887766555443320 1 1111 100001111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
....+|+|+-...- ...+..+.+.|++||.++.
T Consensus 241 ~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 241 AADSLDYIIDTVPV----------FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred hcCCCcEEEECCCc----------hHHHHHHHHHhccCCEEEE
Confidence 11357888743221 1356667788999998764
No 391
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=66.78 E-value=15 Score=34.62 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=60.2
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..+++.+||=.|. |-|..+..+++.....++++--+++-.+.+++... ..-+.+...|+.+. ..+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA------------d~vi~y~~~~~~~~-v~~ 205 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA------------DHVINYREEDFVEQ-VRE 205 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC------------CEEEcCCcccHHHH-HHH
Confidence 4677999999985 45667788877654477777777766665555433 11122223332211 111
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ....+|+|+..-.- ..+......|+++|.++..
T Consensus 206 ~t-~g~gvDvv~D~vG~-----------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 206 LT-GGKGVDVVLDTVGG-----------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred Hc-CCCCceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence 11 23479999875543 3456678889999997653
No 392
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.53 E-value=11 Score=36.40 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
++.+|+=+|+|. |..+...+......|+.+|.+++.++.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 456799999984 44455555443447999999987766655443
No 393
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.15 E-value=42 Score=31.43 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=59.2
Q ss_pred hCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC----cCccc
Q 017369 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG----DCYEV 154 (372)
Q Consensus 81 ~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----D~~~~ 154 (372)
.+.++.+||=.|+ |-|..+..+++....++++++.+++..+.+++.+.. -.++.. +..+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa--------------~~vi~~~~~~~~~~- 212 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF--------------DDAFNYKEEPDLDA- 212 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC--------------ceeEEcCCcccHHH-
Confidence 4678899999886 456677777776555899999998888777663320 011211 1110
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.+... ..+.+|+|+-... . ..+....+.|+++|.++.
T Consensus 213 ~i~~~--~~~gvd~v~d~~g---------~--~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 213 ALKRY--FPNGIDIYFDNVG---------G--KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred HHHHh--CCCCcEEEEECCC---------H--HHHHHHHHHhccCcEEEE
Confidence 01111 1246898874322 1 356778899999999874
No 394
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=65.69 E-value=20 Score=39.60 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCC
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 163 (372)
.+..+||+|.|.-.=.+.++- ....|+.+|+-|-. +. ...+.....|+++|.....+. ..
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP-~~~pvtmvD~RP~a--------e~-------m~~w~t~T~y~~~DYl~~~~~----~~ 881 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIP-PDTPVTMVDTRPFA--------EP-------MNCWNTQTQYIQADYLSDAWW----NG 881 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS--TTSEEEEEESS--S--------SS-------CCCCSTTEEEEES-TTSCCGG----CC
T ss_pred CcceEEEccCCccceeeeccC-CCCceEEEecCCcc--------cc-------cchhhhcceeeeeccccceeE----ec
Confidence 367999999998654444432 23369999997621 11 123345678999998765543 45
Q ss_pred CCeeEEEeccccccc-CCCHHHHHHHHHHHHHhcCCCcE--EEEEeC
Q 017369 164 APFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGT--FIGTMP 207 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~-~~~~~~~~~~l~~i~~~LkpgG~--li~~~~ 207 (372)
.++|.+.|.++|--. ...--++.+.++++.+.+++.|. +++.+-
T Consensus 882 ~~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLN 928 (1289)
T PF06016_consen 882 TPFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLN 928 (1289)
T ss_dssp ---SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B
T ss_pred CCCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEec
Confidence 789999999876532 11223577889999999988875 666553
No 395
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=65.60 E-value=51 Score=30.94 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=59.8
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-..+.+.....+|+++|.+..... .+.... ...++ .+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~---------------------~~~~~~-~~~~l--~e~--- 187 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP---------------------GVQSFA-GREEL--SAF--- 187 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC---------------------Cceeec-ccccH--HHH---
Confidence 568999999986 55455544444447999997652110 011010 11111 111
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLREV 219 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~~ 219 (372)
-...|+|++...+ +.....-+-......||||.+|+ +.+.+.+.+++.+...
T Consensus 188 l~~aDvvv~~lPl-----t~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 188 LSQTRVLINLLPN-----TPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred HhcCCEEEECCCC-----CHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 1457999865443 33333333356888899998777 3456778888877763
No 396
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.43 E-value=23 Score=34.85 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=50.9
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|+=+|+|. |......++....+|+.+|.++.....|... + .. ..++.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--------------G--~~--v~~l~ea-------- 264 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--------------G--FR--VMTMEEA-------- 264 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--------------C--CE--ecCHHHH--------
Confidence 688999999986 3333344444445899999998654443221 1 11 1122111
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHH-HHHHhcCCCcEEEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~i~~~LkpgG~li~~ 205 (372)
-..+|+|+..-.- ..++. .....+|+|++++..
T Consensus 265 l~~aDVVI~aTG~----------~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 265 AELGDIFVTATGN----------KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HhCCCEEEECCCC----------HHHHHHHHHhcCCCCCEEEEc
Confidence 1368999764321 13444 677889999987643
No 397
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=65.07 E-value=83 Score=27.77 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCEEEEecCCccc--cHHHHH---HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 84 RGDVVLDLACGKGG--DLIKWD---KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~--~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
....+++.+|+-|. .++.|+ ++-.+++++|-..+..+...++.+.. .++...++|+.++..+.-+.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~--------~~~~~~vEfvvg~~~e~~~~- 111 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE--------AGLSDVVEFVVGEAPEEVMP- 111 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh--------ccccccceEEecCCHHHHHh-
Confidence 34678888666443 233332 23567899999998888888877754 23344578898885432221
Q ss_pred ccCCCCCeeEEEeccc
Q 017369 159 VLADDAPFDICSCQFA 174 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~ 174 (372)
.-...|+++...-
T Consensus 112 ---~~~~iDF~vVDc~ 124 (218)
T PF07279_consen 112 ---GLKGIDFVVVDCK 124 (218)
T ss_pred ---hccCCCEEEEeCC
Confidence 2256787775443
No 398
>PRK08324 short chain dehydrogenase; Validated
Probab=64.18 E-value=35 Score=35.84 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=47.6
Q ss_pred CCCEEEEecCCcc--ccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc-----
Q 017369 84 RGDVVLDLACGKG--GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL----- 156 (372)
Q Consensus 84 ~~~~VLDlGcG~G--~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----- 156 (372)
++.+||=.|++.| ..+...+.....+|+.+|.++..++.+...+.. ...+.++.+|+.+..-
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----------~~~v~~v~~Dvtd~~~v~~~~ 489 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----------PDRALGVACDVTDEAAVQAAF 489 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----------cCcEEEEEecCCCHHHHHHHH
Confidence 4578888886433 333333333344899999998877766554431 1257778888865331
Q ss_pred ccccCCCCCeeEEEecccc
Q 017369 157 DKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l 175 (372)
.......+.+|+|+.+.+.
T Consensus 490 ~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 490 EEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 0000012578999887653
No 399
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=63.23 E-value=1.2e+02 Score=27.81 Aligned_cols=177 Identities=11% Similarity=0.055 Sum_probs=85.5
Q ss_pred CEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC--------cCeEEEECcCcccc
Q 017369 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~ 155 (372)
.+|.=||+|. |. ++..++..+ ..|+++|.+++.++.++++..+..........+. ..+. ...+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE--- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH---
Confidence 4688889985 32 333333333 4799999999998877665431000000000000 0111 111211
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe--CChHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM--PDANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+.. +.++.+....++.++...++|+..++..+ .....+...+.. ...+..++|
T Consensus 80 ------~~~~aD~Viea-----v~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~------~~r~~g~h~ 142 (295)
T PLN02545 80 ------ELRDADFIIEA-----IVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQR------PQQVIGMHF 142 (295)
T ss_pred ------HhCCCCEEEEc-----CccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCC------CcceEEEec
Confidence 11456888753 23344566778888999999987665323 233333222111 112223333
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... ..+.-....-.... - --..+.+..+++..|..++....-+.|+...+
T Consensus 143 ~~pp---------~~~~lveiv~g~~t-~---~e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri 193 (295)
T PLN02545 143 MNPP---------PIMKLVEIIRGADT-S---DEVFDATKALAERFGKTVVCSQDYPGFIVNRI 193 (295)
T ss_pred cCCc---------ccCceEEEeCCCCC-C---HHHHHHHHHHHHHcCCeeEEecCcccHHHHHH
Confidence 2211 11111100000000 0 11345678889999999888776666654443
No 400
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.60 E-value=48 Score=31.19 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=55.9
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--c
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~ 156 (372)
...++.+||-.|+|. |..+..+++. +...++++|.+++..+.+++.-. ..++..+-.+.. .
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~v~~~~~~~~~~i 227 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA---------------TDIVDYKNGDVVEQI 227 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC---------------ceEecCCCCCHHHHH
Confidence 456788999998763 4444555554 44469999999888777765211 111111100000 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.... ....+|+|+....- ...+..+.+.|+++|.++.
T Consensus 228 ~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 228 LKLT-GGKGVDAVIIAGGG----------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHHh-CCCCCcEEEECCCC----------HHHHHHHHHHhhcCCEEEE
Confidence 0001 23468988753221 1456788889999998773
No 401
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=62.30 E-value=56 Score=31.07 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=55.7
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
.+.++.+||-.|+|. |..+..+++. +...++++|.++...+.+++... ..++..+-.+. .+
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~---------------~~~i~~~~~~~~~~v 247 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA---------------THVINPKEEDLVAAI 247 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC---------------cEEecCCCcCHHHHH
Confidence 456788999988754 4445555554 44469999999887776654211 11121111110 01
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. . ....+|+|+-...- ...+..+.+.|+++|.++..
T Consensus 248 ~~-~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 248 RE-I-TGGGVDYALDTTGV----------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HH-H-hCCCCcEEEECCCC----------cHHHHHHHHHhccCCEEEEe
Confidence 01 1 13468988753221 13467788889999997753
No 402
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=62.19 E-value=76 Score=29.80 Aligned_cols=98 Identities=22% Similarity=0.134 Sum_probs=55.4
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||=.|+|. |..+..+++.... .|++++.+++..+.+++... -.++ |..+..+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga---------------~~~i--~~~~~~~~ 230 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA---------------TIVL--DPTEVDVV 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEE--CCCccCHH
Confidence 3456788898888642 3344455554444 79999999988887754211 0111 11111110
Q ss_pred cc---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+. ......+|+|+-.... ...+..+.+.|+++|.++.
T Consensus 231 ~~l~~~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 231 AEVRKLTGGGGVDVSFDCAGV----------QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred HHHHHHhCCCCCCEEEECCCC----------HHHHHHHHHhccCCCEEEE
Confidence 00 0023458999753321 1356777888999998764
No 403
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=61.75 E-value=69 Score=24.38 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhhcCCccCCeEEEEEeCchhhhcccCCCCCceeeEEEEecccc
Q 017369 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEDAV 260 (372)
Q Consensus 181 ~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~~f~~~~~~g~~y~~~l~~~~ 260 (372)
+.++..++|..+.... .|.+++|.--...++..+...++. ||.... ...+
T Consensus 9 p~~d~~~~l~~La~~t--~~~~ifTfAP~T~~L~~m~~iG~l-------------------FP~~dR---------sp~i 58 (97)
T PF07109_consen 9 PAEDAAQMLAHLASRT--RGSLIFTFAPRTPLLALMHAIGKL-------------------FPRPDR---------SPRI 58 (97)
T ss_pred CHHHHHHHHHHHHHhc--cCcEEEEECCCCHHHHHHHHHhcc-------------------CCCCCC---------CCcE
Confidence 5788889999888865 467888886665666666554331 221110 0111
Q ss_pred cCceeeeehHHHHHHHHHcCcEEEEecC
Q 017369 261 DCPEWIVPFHIFKSLAEEYDLELVFVKN 288 (372)
Q Consensus 261 ~~~e~l~~~~~l~~l~~~~Gf~~v~~~~ 288 (372)
|.+..+.+.+.+++.|+++.....
T Consensus 59 ----~~~~e~~l~~~l~~~g~~~~r~~r 82 (97)
T PF07109_consen 59 ----YPHREEDLRRALAAAGWRIGRTER 82 (97)
T ss_pred ----EEeCHHHHHHHHHhCCCeeeeccc
Confidence 577788899999999999987653
No 404
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=61.43 E-value=12 Score=33.61 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
+..+++|+-||+|.++..+.. ....|+.-|+++..+...+..+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 678999999999988877654 45589999999988877764443
No 405
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=61.16 E-value=69 Score=30.25 Aligned_cols=42 Identities=24% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHH
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCR 124 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~ 124 (372)
.++.+||=.|+|. |..+..+++.... +|++++.+++..+.++
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3778888888753 3344445554444 8999998887776664
No 406
>PRK08267 short chain dehydrogenase; Provisional
Probab=60.72 E-value=83 Score=27.98 Aligned_cols=77 Identities=12% Similarity=-0.075 Sum_probs=45.4
Q ss_pred CEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc-c---
Q 017369 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K--- 158 (372)
Q Consensus 86 ~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~--- 158 (372)
.+||-.|++.| +...++. .....|+.++.+++.++....... ..++.++++|+.+..-- .
T Consensus 2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG------------AGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc------------CCceEEEEecCCCHHHHHHHHH
Confidence 35777877543 3333322 234479999998887776655432 22578888998764310 0
Q ss_pred -ccCC-CCCeeEEEecccc
Q 017369 159 -VLAD-DAPFDICSCQFAM 175 (372)
Q Consensus 159 -~~~~-~~~fD~V~~~~~l 175 (372)
.... .+++|+|+.+...
T Consensus 69 ~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 69 DFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHcCCCCCEEEECCCC
Confidence 0001 3578999887654
No 407
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=60.60 E-value=32 Score=34.22 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|+=+|+|. |.-....+.....+|+.+|.++.....|.. . .+.+ .++.+.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~--------------G~~~--~~leel-------- 306 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--E--------------GYQV--VTLEDV-------- 306 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--c--------------Ccee--ccHHHH--------
Confidence 688999999997 444444444444589999988764433322 1 1111 122211
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHH-HHHHHhcCCCcEEEEEe-CChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGTM-PDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~li~~~-~~~~~~~~~l~~ 218 (372)
-...|+|++.-.-. .++ .+....||||++++-+. .+.+..+..+..
T Consensus 307 l~~ADIVI~atGt~----------~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~ 354 (476)
T PTZ00075 307 VETADIFVTATGNK----------DIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEA 354 (476)
T ss_pred HhcCCEEEECCCcc----------cccCHHHHhccCCCcEEEEcCCCchHHhHHHHHh
Confidence 14689998753222 233 46778899999987544 344444455443
No 408
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=59.93 E-value=80 Score=30.02 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHHhCCCCCEEEEecCCccccHHHH-HH-cCCCEEEEEeCChHHHHHHHHHhc
Q 017369 77 LVQLYARRGDVVLDLACGKGGDLIKW-DK-AKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 77 l~~~~~~~~~~VLDlGcG~G~~~~~l-~~-~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
+.....+++.+|.-+|||.=+++.-. +. .+..+++++|+++.-++.|++.-.
T Consensus 178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA 231 (366)
T COG1062 178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA 231 (366)
T ss_pred hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC
Confidence 34445678999999999863333222 22 467789999999999999987654
No 409
>PRK12939 short chain dehydrogenase; Provisional
Probab=58.64 E-value=60 Score=28.51 Aligned_cols=81 Identities=11% Similarity=-0.063 Sum_probs=45.9
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc---
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--- 157 (372)
++.+||=.|++ |.+...++. ....++++++.+++.++...+..... ..++.++.+|+.+....
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA----------GGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----------CCcEEEEEccCCCHHHHHHH
Confidence 35778877753 334444332 33447889998887666655544311 23578888898764310
Q ss_pred --cccCCCCCeeEEEecccc
Q 017369 158 --KVLADDAPFDICSCQFAM 175 (372)
Q Consensus 158 --~~~~~~~~fD~V~~~~~l 175 (372)
......+..|+|+.....
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 000011568988876543
No 410
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.45 E-value=61 Score=30.31 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc-cccc
Q 017369 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDK 158 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~ 158 (372)
..++.+||-.|||. |..+..+++.... .|++++-+++-.+.+++.-. ..++..+..+. .+..
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~~ 225 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA---------------DVVINPREEDVVEVKS 225 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCc---------------ceeeCcccccHHHHHH
Confidence 35678888877754 4455556555444 68888777766665554211 01111110011 0100
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. ..+.+|+|+..-.- ...+..+.+.|+++|.++..
T Consensus 226 ~~-~~~~vd~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 226 VT-DGTGVDVVLEMSGN----------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred Hc-CCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 01 33578999853221 13456677889999998754
No 411
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=58.41 E-value=54 Score=31.50 Aligned_cols=37 Identities=19% Similarity=-0.033 Sum_probs=25.6
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHH
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGS 119 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~ 119 (372)
.++.+||=.|||. |..+..+++.....+++++.+++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4788999888864 445555555555578999887654
No 412
>PRK10083 putative oxidoreductase; Provisional
Probab=58.25 E-value=79 Score=29.42 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=31.8
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHH-c-CCCEEEEEeCChHHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDK-A-KIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~-~-~~~~v~gvD~s~~~l~~a~~~ 126 (372)
....++.+||=.|+|. |..+..+++ . +...++++|.+++..+.+++.
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~ 205 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES 205 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh
Confidence 3466788999999753 333444444 2 554688999999888777653
No 413
>PRK07576 short chain dehydrogenase; Provisional
Probab=58.23 E-value=80 Score=28.35 Aligned_cols=79 Identities=8% Similarity=0.026 Sum_probs=44.1
Q ss_pred CCCEEEEecCCccccHHHHH---HcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc----
Q 017369 84 RGDVVLDLACGKGGDLIKWD---KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL---- 156 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---- 156 (372)
++.+||-.|.+. ++...++ ......|++++.+++.++........ ...++.++..|+.+..-
T Consensus 8 ~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~i~~~ 76 (264)
T PRK07576 8 AGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ----------AGPEGLGVSADVRDYAAVEAA 76 (264)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----------hCCceEEEECCCCCHHHHHHH
Confidence 466888887633 3433332 23344799999988766655444331 02246777888865321
Q ss_pred -ccccCCCCCeeEEEecc
Q 017369 157 -DKVLADDAPFDICSCQF 173 (372)
Q Consensus 157 -~~~~~~~~~fD~V~~~~ 173 (372)
.......+..|+++++.
T Consensus 77 ~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 77 FAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 01111124689988754
No 414
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=57.85 E-value=78 Score=29.58 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=27.1
Q ss_pred CCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHH
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDC 123 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a 123 (372)
++.+|+-+|||. |......+.. +...|+.+|.+++-....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 688999999986 3333444333 556799999998655433
No 415
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.67 E-value=1.5e+02 Score=27.09 Aligned_cols=103 Identities=15% Similarity=0.012 Sum_probs=55.2
Q ss_pred CEEEEecCCcccc--HHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC---------CcCeEEEECcCccc
Q 017369 86 DVVLDLACGKGGD--LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF---------SFPARLICGDCYEV 154 (372)
Q Consensus 86 ~~VLDlGcG~G~~--~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~~~ 154 (372)
.+|.=+|+|.-+. +..++. ....|+.+|.+++.++.++++.............+ ..++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH-
Confidence 4688889986432 223332 33479999999999888876542110000000000 012221 222211
Q ss_pred ccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.-...|+|+.... +..+-...+++++...++++..+.
T Consensus 81 -------a~~~aDlVieavp-----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 81 -------AVKDADLVIEAVP-----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred -------HhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 1245788876432 233456778889988888776553
No 416
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=57.49 E-value=88 Score=29.04 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=50.6
Q ss_pred CEEEEecCCccc--cHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+|.=||+|.-+ ++..+...+. ..|+++|.+++.++.+++... ... ...+..+ .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~--------------~~~-~~~~~~~--------~ 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL--------------GDR-VTTSAAE--------A 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC--------------Cce-ecCCHHH--------H
Confidence 578889998733 3333333333 379999999987776653210 011 1111111 1
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
-...|+|+..-.. .....++..+...+++|+.++
T Consensus 64 ~~~aDvViiavp~-------~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 VKGADLVILCVPV-------GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred hcCCCEEEECCCH-------HHHHHHHHHHHhhCCCCCEEE
Confidence 1457988765433 234567777888889987654
No 417
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.49 E-value=1.2e+02 Score=27.91 Aligned_cols=92 Identities=9% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHhCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 79 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.....++.+||=.|||. |..+..+++....+++.++.+++..+.+++ +. . ..++. ....
T Consensus 162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g-------------~-~~~~~--~~~~--- 221 (329)
T cd08298 162 LAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG-------------A-DWAGD--SDDL--- 221 (329)
T ss_pred hhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC-------------C-cEEec--cCcc---
Confidence 33456788888887763 223344444445589999988877777643 21 0 01111 1111
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
....+|+++..-.. ...+..+.+.|+++|.++.
T Consensus 222 ----~~~~vD~vi~~~~~----------~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 222 ----PPEPLDAAIIFAPV----------GALVPAALRAVKKGGRVVL 254 (329)
T ss_pred ----CCCcccEEEEcCCc----------HHHHHHHHHHhhcCCEEEE
Confidence 12458877642111 1367888999999999874
No 418
>PRK08265 short chain dehydrogenase; Provisional
Probab=57.43 E-value=89 Score=27.93 Aligned_cols=77 Identities=17% Similarity=-0.000 Sum_probs=43.7
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc---
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--- 157 (372)
.+.++|-.|++.| +...++. ....+|+.+|.+++.++...+... .++.++.+|+.+..-.
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASLG-------------ERARFIATDITDDAAIERA 70 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CeeEEEEecCCCHHHHHHH
Confidence 3568888886544 3333322 233489999998765554443321 2477788888764310
Q ss_pred --cccCCCCCeeEEEeccc
Q 017369 158 --KVLADDAPFDICSCQFA 174 (372)
Q Consensus 158 --~~~~~~~~fD~V~~~~~ 174 (372)
......+..|+++.+..
T Consensus 71 ~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 71 VATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 00001256898887654
No 419
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.35 E-value=68 Score=29.51 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=54.6
Q ss_pred CEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCC--cc-cccccCC--------CcCeEEEECcCc
Q 017369 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA--DH-HQRRKKF--------SFPARLICGDCY 152 (372)
Q Consensus 86 ~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~-~~~~~~~--------~~~~~~~~~D~~ 152 (372)
.+|.=+|||. |. ++..++..+ ..|+.+|.+++.++.++++..... .. ....... ..++.+ ..|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence 4688889986 32 333343333 379999999999988766543200 00 0000000 001111 11110
Q ss_pred ccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.-...|+|+..- .+..+....+++++.+.++|+..++
T Consensus 82 ---------~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 ---------SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ---------HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 114578887643 2233446778888999998887654
No 420
>PRK07574 formate dehydrogenase; Provisional
Probab=57.03 E-value=49 Score=32.10 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-....+.....+|+++|.+....+..+. . .+.. ..++.++
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-~---------------g~~~-~~~l~el-------- 245 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-L---------------GLTY-HVSFDSL-------- 245 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh-c---------------Ccee-cCCHHHH--------
Confidence 467899999986 655555544445589999987632221110 0 1211 1222221
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHH-HHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+. +.-..++ ++....||+|.+||= .+.+.+.+.+.+..
T Consensus 246 l~~aDvV~l~lPlt------~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 246 VSVCDVVTIHCPLH------PETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred hhcCCEEEEcCCCC------HHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 14679998765543 2233444 467888999987773 34567777777765
No 421
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=56.85 E-value=1.3e+02 Score=28.26 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred CEEEEecCCcccc--HHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcC-eEEEECcCcccccccccCC
Q 017369 86 DVVLDLACGKGGD--LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~G~~--~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~ 162 (372)
.+|--+|.|+=+- +..++. ..-.|+..|+++++++.++............+..+... ..-..+-+ .....+..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i---~~~~~~~~ 79 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARI---TPTTDLAA 79 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhc---cccCchhH
Confidence 4677788887433 333333 32369999999999998877655321100000000000 00000000 00000000
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC--ChHHHHHHHhhhcCCccCCeEEEEEeCchhhhc
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~f~~~~~~~ 240 (372)
-...|+| ++-.+++.+-.+++++++-.+++|+..|--.|. ....+-..... ...+.-++|-+.
T Consensus 80 l~~~DlV-----IEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~r------per~iG~HFfNP---- 144 (307)
T COG1250 80 LKDADLV-----IEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKR------PERFIGLHFFNP---- 144 (307)
T ss_pred hccCCEE-----EEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCC------chhEEEEeccCC----
Confidence 1335555 445566778889999999999999987765443 23333333211 111222332111
Q ss_pred ccCCCCCceeeEEEEeccccc-CceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 241 KFKSSRPFGIQYKFHLEDAVD-CPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 241 ~f~~~~~~g~~y~~~l~~~~~-~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
+ +-..|-+.+. ....=-..+...++++..|-..+...+.+-|+....
T Consensus 145 ------~----~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NRi 192 (307)
T COG1250 145 ------V----PLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNRL 192 (307)
T ss_pred ------C----CcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHhH
Confidence 1 1111222221 000012345667788888966566677787765544
No 422
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=56.77 E-value=61 Score=30.82 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=31.9
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 125 (372)
..+.++.+||=.|+|. |..+..+++.... +|+++|.++..++.+++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3457889999998753 3344445554333 79999999988888754
No 423
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.71 E-value=38 Score=31.86 Aligned_cols=51 Identities=16% Similarity=0.014 Sum_probs=38.8
Q ss_pred HHHhCCCCCEEEEecC-CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhc
Q 017369 78 VQLYARRGDVVLDLAC-GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 78 ~~~~~~~~~~VLDlGc-G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
....+.|+.+|-=+|. |-|.++.+++++-..+|+++|-+..--+.|-+++.
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcC
Confidence 3445568888777664 46888899988877799999999877777776654
No 424
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=56.37 E-value=18 Score=29.62 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=23.7
Q ss_pred EecCCcc--ccHHHHHH---cCCCEEEEEeCChHHHHHHHHH
Q 017369 90 DLACGKG--GDLIKWDK---AKIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 90 DlGcG~G--~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~ 126 (372)
|+|+..| .....++. .....|+++|+++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 55554431 2455799999999999888887
No 425
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=56.29 E-value=91 Score=28.76 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=61.9
Q ss_pred CEEEEecCCc-cc-cHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEE-CcCcccccccccC
Q 017369 86 DVVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVLA 161 (372)
Q Consensus 86 ~~VLDlGcG~-G~-~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~ 161 (372)
.+|+=+|.|- |+ ++..+...+. ..++|.|.+...++.+...-- .... .+....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv----------------~d~~~~~~~~~------- 60 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV----------------IDELTVAGLAE------- 60 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc----------------ccccccchhhh-------
Confidence 5678888875 33 3333333333 247899999888777764321 1111 111001
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhhh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREV 219 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~~ 219 (372)
.....|+|+..--+ .....+++++...|++|..+.=.+.-...+++.+.+.
T Consensus 61 ~~~~aD~VivavPi-------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 61 AAAEADLVIVAVPI-------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKY 111 (279)
T ss_pred hcccCCEEEEeccH-------HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHh
Confidence 23568999876544 4467889999999999877664444445566665553
No 426
>PRK13243 glyoxylate reductase; Reviewed
Probab=56.15 E-value=40 Score=31.97 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-..+.+.....+|+++|.++.... +. .. .+. ..++.++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-~~---------------~~~--~~~l~el-------- 201 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EK-EL---------------GAE--YRPLEEL-------- 201 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HH-Hc---------------CCE--ecCHHHH--------
Confidence 578999999987 55455554444458999998764321 11 10 011 1122221
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+ +.+...-+-.+....+|||.+|+= .+.+.+.+.+.+..
T Consensus 202 l~~aDiV~l~lP~-----t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 202 LRESDFVSLHVPL-----TKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HhhCCEEEEeCCC-----ChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 1457988875443 222222233567888999988773 34577777777765
No 427
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=55.65 E-value=52 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.040 Sum_probs=28.1
Q ss_pred CCCEEEEecCCcc-ccHHHHHHcCCCEEEEEeCChHHHHHHH
Q 017369 84 RGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCR 124 (372)
Q Consensus 84 ~~~~VLDlGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~ 124 (372)
.+.+|+=+|+|.- ..+...+......|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5789999999863 3333444444458999999987655554
No 428
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=54.60 E-value=66 Score=33.98 Aligned_cols=177 Identities=13% Similarity=-0.000 Sum_probs=93.1
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC--------cCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~ 155 (372)
.+|.=||+|+=+ ++..++....-.|+.+|.+++.++.+..+.........++..+. .++.+. .|..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR--- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH---
Confidence 679999999833 33334423334799999999999988776543111000000000 122222 1211
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC--hHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+ +-++++.+-..+++.++.+.++|+..|.-.+.. ...+...+. ....+.-++|
T Consensus 386 ------~~~~aDlVi-----Eav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~------~p~r~ig~Hf 448 (708)
T PRK11154 386 ------GFKHADVVI-----EAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAA------RPEQVIGLHY 448 (708)
T ss_pred ------HhccCCEEe-----ecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcC------cccceEEEec
Confidence 114567665 334566677889999999999999877654432 233333221 1122333333
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... .-. .+-+.+.-+ .---....+.++++..|...|...+.+-|+...+
T Consensus 449 f~P~----------~~~----~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl 499 (708)
T PRK11154 449 FSPV----------EKM----PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRI 499 (708)
T ss_pred CCcc----------ccC----ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHHHHH
Confidence 2111 100 111111100 0122345667788889998888877776654443
No 429
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=54.46 E-value=1.1e+02 Score=29.71 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=33.6
Q ss_pred hCCCCCEEEEec-CC-ccccHHHHHHc---CCCEEEEEeCChHHHHHHHHH
Q 017369 81 YARRGDVVLDLA-CG-KGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 81 ~~~~~~~VLDlG-cG-~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~ 126 (372)
...++.+||=+| || -|..+..+++. +..+|+++|.+++-++.|++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 456788999887 44 45566666654 234799999999999988775
No 430
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=54.22 E-value=81 Score=29.46 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=54.4
Q ss_pred CCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc--
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-- 158 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-- 158 (372)
.++.+||-.|+|. |..+..+++.... .|++++.+++..+.+++... -.++ +..+..+..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~---------------~~~~--~~~~~~~~~~~ 224 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA---------------TRAV--NVAKEDLRDVM 224 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC---------------cEEe--cCccccHHHHH
Confidence 4677888887764 4455555554433 68888888877766654321 0111 111111100
Q ss_pred -ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 159 -VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 159 -~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+.....+|+|+....- ...+..+.+.|+++|.++...
T Consensus 225 ~~~~~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 225 AELGMTEGFDVGLEMSGA----------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred HHhcCCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 01134568988753221 135667788999999987543
No 431
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=54.14 E-value=1.3e+02 Score=25.23 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=63.3
Q ss_pred CCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-cccccC
Q 017369 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLA 161 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~ 161 (372)
.++.+|+-|||=+-.....-.......++-+|++. |+.. ++.+ .|..-|..... ++..+
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--------RF~~----------~~~~-~F~fyD~~~p~~~~~~l- 83 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--------RFEQ----------FGGD-EFVFYDYNEPEELPEEL- 83 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--------hHHh----------cCCc-ceEECCCCChhhhhhhc-
Confidence 35689999999774333322112344689999986 3321 1222 45666665421 11111
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCCh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~ 209 (372)
.++||+|++.--+ + +++-..+....+.-++|+++.+++.++..
T Consensus 84 -~~~~d~vv~DPPF--l--~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 84 -KGKFDVVVIDPPF--L--SEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred -CCCceEEEECCCC--C--CHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 4799999997665 2 45566677777888889999988877643
No 432
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=54.10 E-value=56 Score=31.63 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=57.4
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC---cCcccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYEVH 155 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---D~~~~~ 155 (372)
...++.+||=.|+|. |..+..+++. +...++.+|.+++-++.|++.-. . .+... +..+ .
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--------------~-~v~~~~~~~~~~-~ 245 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--------------E-TVDLSKDATLPE-Q 245 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--------------e-EEecCCcccHHH-H
Confidence 456788888888864 3344445554 44446778888888888776321 1 11111 1100 0
Q ss_pred cccccCCCCCeeEEEecccccc---cCC-CHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 156 LDKVLADDAPFDICSCQFAMHY---SWS-TEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~---~~~-~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+.... ....+|+|+-.-...- ..+ ...+....+....+++++||.+++
T Consensus 246 v~~~~-~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 246 IEQIL-GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HHHHc-CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 11111 2346898886443210 000 001123478888899999999764
No 433
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=54.04 E-value=31 Score=31.91 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred EEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHH
Q 017369 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (372)
Q Consensus 112 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~ 191 (372)
-+...+...+.++++.. ++.++++|+.++--.+ +.+.+|.++..-+-.|+ +...+..++.+
T Consensus 291 P~yl~~~~YEsir~n~~--------------RV~ihha~~iE~l~~k---~ag~Vdr~iLlDaqdwm--td~qln~lws~ 351 (414)
T COG5379 291 PAYLDEGVYESIRQNLR--------------RVAIHHADIIELLAGK---PAGNVDRYILLDAQDWM--TDGQLNSLWSE 351 (414)
T ss_pred ChhhchhhHHHHHhhhh--------------heeeecccHHHHhccC---CCCCcceEEEecchhhc--ccchHHHHHHH
Confidence 34455666666666654 4888899987654321 45789999988888877 55789999999
Q ss_pred HHHhcCCCcEEEEEe
Q 017369 192 VSALLRPGGTFIGTM 206 (372)
Q Consensus 192 i~~~LkpgG~li~~~ 206 (372)
+.+-+.+|..+|+-+
T Consensus 352 isrta~~gA~VifRt 366 (414)
T COG5379 352 ISRTAEAGARVIFRT 366 (414)
T ss_pred HhhccCCCcEEEEec
Confidence 999999999998765
No 434
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=53.41 E-value=1.1e+02 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred hCCCCCEEEEecCC--ccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 81 ~~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
...++.+||-.||. .|..+..++......+++++.++...+.++.
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 45678899999982 4445555555555579999999887777644
No 435
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=53.12 E-value=74 Score=29.03 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=63.4
Q ss_pred hCCCCCEEEEe--cCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDL--ACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDl--GcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
..++|.+||-- +.|-|..+..|++....+++++-.+.+-.+.|++... ...+....-|..+.- .+
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~------------~h~I~y~~eD~v~~V-~k 209 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGA------------EHPIDYSTEDYVDEV-KK 209 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCC------------cceeeccchhHHHHH-Hh
Confidence 46789888765 4567778888888777788998888888888877543 223444444443211 01
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
+......|++.-+... ..+..-..+|||+|.++
T Consensus 210 -iTngKGVd~vyDsvG~-----------dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 210 -ITNGKGVDAVYDSVGK-----------DTFAKSLAALKPMGKMV 242 (336)
T ss_pred -ccCCCCceeeeccccc-----------hhhHHHHHHhccCceEE
Confidence 1134568888654433 34455667899999986
No 436
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.74 E-value=32 Score=32.25 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=34.8
Q ss_pred hCCCCCEEEEecCCccccHHHHHH--cCCCEEEEEeCChHHHHHHHHHhc
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYN 128 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~ 128 (372)
.+.|+++|.-+|+|.=+++...-. .+.++++|||++++-.+.|++.-.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 456788888888876444433222 467789999999999999987643
No 437
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=52.56 E-value=1.3e+02 Score=29.65 Aligned_cols=38 Identities=16% Similarity=-0.029 Sum_probs=27.0
Q ss_pred EEEEecCCccccHHHHHH--------cCCCEEEEEeCChHHHHHHHH
Q 017369 87 VVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~a~~ 125 (372)
+|.=||.|+. ++..+.. .+.+.++-+|++++.++....
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 5777899986 6655543 134689999999987776433
No 438
>PRK06487 glycerate dehydrogenase; Provisional
Probab=52.45 E-value=45 Score=31.34 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-..+.++....+|+++|.+... . ... ..++. +.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~--------~--------------~~~--~~~l~-----el--- 194 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP--------A--------------RPD--RLPLD-----EL--- 194 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc--------c--------------ccc--ccCHH-----HH---
Confidence 467999999987 655555555555589999875310 0 000 11111 11
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~ 218 (372)
-...|+|++..-+ +.+...-+=.+....||||.+|| +.+.+.+.+++.++.
T Consensus 195 l~~sDiv~l~lPl-----t~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 195 LPQVDALTLHCPL-----TEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHhCCEEEECCCC-----ChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 1457888765443 22223333356778899998887 346788888888775
No 439
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=52.39 E-value=42 Score=31.08 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=34.2
Q ss_pred hCCCCCEEEEecCCccccHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
....+.+|.-+|+|....+..+ ...+.+|.+||+++.-|..-+-++
T Consensus 60 ~~g~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHH
Confidence 3457889999999876555555 455669999999998887655544
No 440
>PRK06701 short chain dehydrogenase; Provisional
Probab=52.26 E-value=1.1e+02 Score=27.99 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCCEEEEEeCChH-HHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEG-SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
++.+||-.|++.| +...++. ....+|+.++.++. .++........ ...++.++.+|+.+....
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK----------EGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh----------cCCeEEEEEccCCCHHHHHH
Confidence 4678898887554 3333322 23447888877643 23333333321 123577888888653311
Q ss_pred ---cccCCCCCeeEEEeccccccc---C--CCHH-----------HHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 ---KVLADDAPFDICSCQFAMHYS---W--STEA-----------RARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l~~~---~--~~~~-----------~~~~~l~~i~~~LkpgG~li~~ 205 (372)
......+.+|+|+.+...... + .+.+ ....+++.+.+.++++|.++..
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 000012468888865443211 0 1111 2234445555666777776654
No 441
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=51.99 E-value=1.3e+02 Score=28.10 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=53.7
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
...++.+||=.|||. |..+..+++.....+++++.+++..+.+++... ..++ +.........
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~vi--~~~~~~~~~~ 228 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA---------------DEFI--ATKDPEAMKK 228 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC---------------cEEe--cCcchhhhhh
Confidence 356778887788743 434444555444479999999888877754211 0111 1111110000
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.+|+|+....-. ..+..+.+.|+++|.++..
T Consensus 229 --~~~~~d~v~~~~g~~----------~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 229 --AAGSLDLIIDTVSAS----------HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred --ccCCceEEEECCCCc----------chHHHHHHHhcCCCEEEEE
Confidence 135688887432211 2356778889999987743
No 442
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.99 E-value=68 Score=28.67 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=47.6
Q ss_pred CCCCEEEEecCCccccHHHHH----HcCCCEEEEEeCChHH-HHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc-
Q 017369 83 RRGDVVLDLACGKGGDLIKWD----KAKIGYYVGIDIAEGS-IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL- 156 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~~~l~----~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~- 156 (372)
..+.+||-.||+.| +...++ +.+..+|+.++-+++. ++.+.+..... ...++.++.+|+.+..-
T Consensus 6 ~~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~---------~~~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 6 GNPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA---------GASSVEVIDFDALDTDSH 75 (253)
T ss_pred CCCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc---------CCCceEEEEecCCChHHH
Confidence 34568999998655 444443 3333578888887764 55554444311 02257888889876431
Q ss_pred ----ccccCCCCCeeEEEecccc
Q 017369 157 ----DKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 157 ----~~~~~~~~~fD~V~~~~~l 175 (372)
.... ..+..|+++.+.+.
T Consensus 76 ~~~~~~~~-~~g~id~li~~ag~ 97 (253)
T PRK07904 76 PKVIDAAF-AGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHH-hcCCCCEEEEeeec
Confidence 1111 12579988876544
No 443
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.69 E-value=54 Score=30.17 Aligned_cols=176 Identities=13% Similarity=0.039 Sum_probs=84.4
Q ss_pred EEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCccccc
Q 017369 87 VVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (372)
Q Consensus 87 ~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~ 156 (372)
+|.=||+|.=+ ++..++..+ ..|+.+|.+++.++.+.++.............+ ..++.+ ..|..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH---
Confidence 57788887522 333333333 379999999999998776432100000000000 001221 112211
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe--CChHHHHHHHhhhcCCccCCeEEEEEeC
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM--PDANVIIKKLREVEGLAIGNSVYWIRLD 234 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~f~ 234 (372)
.-...|+|+.... ++..-...++.++.+.++|+..++..+ .....+.+.+.. .....-.+|-
T Consensus 78 -----~~~~aD~Vi~avp-----e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~------~~r~~g~h~~ 141 (288)
T PRK09260 78 -----AVADADLVIEAVP-----EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKR------PERVIAMHFF 141 (288)
T ss_pred -----hhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC------cccEEEEecC
Confidence 1245788875432 233335577888889999987665433 344433332211 0111122221
Q ss_pred chhhhcccCCCCCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 235 EEFADKKFKSSRPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 235 ~~~~~~~f~~~~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
. +..+.. +-+.+.-+ .---..+.+..+++..|-+++...+-+-|+...+
T Consensus 142 ~----------Pv~~~~----Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl 191 (288)
T PRK09260 142 N----------PVHKMK----LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVTSRI 191 (288)
T ss_pred C----------CcccCc----eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHH
Confidence 1 111111 11111000 0011345677888899999988877677765443
No 444
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=51.19 E-value=1.3e+02 Score=28.03 Aligned_cols=97 Identities=22% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCCEEEEecCC-ccccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACG-KGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
..++.+||-.|+| .|..+..++...... |++++-++...+.+++... ..++ |.....+.+.
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~v--~~~~~~~~~~ 221 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA---------------TYVV--NPFKEDVVKE 221 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------cEEE--cccccCHHHH
Confidence 3567788777765 244455555544444 8888888776666654211 1111 1111111000
Q ss_pred ---cCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 160 ---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 160 ---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
......+|+|+-...- ...+..+.+.|+++|.++..
T Consensus 222 l~~~~~~~~~d~vld~~g~----------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 222 VADLTDGEGVDVFLEMSGA----------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred HHHhcCCCCCCEEEECCCC----------HHHHHHHHHhhcCCCEEEEE
Confidence 0123568999753211 13567788889999998654
No 445
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.85 E-value=1.4e+02 Score=26.20 Aligned_cols=111 Identities=10% Similarity=-0.051 Sum_probs=54.5
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCCEEEEEeCCh-HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc-
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK- 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~- 158 (372)
.+.+||-.|+..| +...+++ ....+|++++-+. ...+.....+.. ...++.++.+|+.+..-..
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~----------~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA----------AGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh----------cCCceEEEEcCCCCHHHHHH
Confidence 3568888886433 3333332 2334788877654 233333333321 1224677888887643110
Q ss_pred c----cCCCCCeeEEEecccccccC---------CCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 159 V----LADDAPFDICSCQFAMHYSW---------STEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~----~~~~~~fD~V~~~~~l~~~~---------~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
. ....+..|+|+.+.+..... .+......+++.+.+.++.+|.+++.
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0 00114678877654321100 01112345666677766666765543
No 446
>PLN03139 formate dehydrogenase; Provisional
Probab=50.27 E-value=58 Score=31.61 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=58.6
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-..+.+.....+|+++|.+....+.... . .+.+ ..++.++
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~-~---------------g~~~-~~~l~el-------- 252 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE-T---------------GAKF-EEDLDAM-------- 252 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-c---------------Ccee-cCCHHHH--------
Confidence 578999999876 433334444444579999987522111111 0 1111 1122221
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+ +.+...-+=.+....||||.+||= .+.+.+.+.+.+..
T Consensus 253 l~~sDvV~l~lPl-----t~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 253 LPKCDVVVINTPL-----TEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred HhhCCEEEEeCCC-----CHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 1457999875443 223222333568889999887773 34567777777765
No 447
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=49.72 E-value=1.1e+02 Score=27.82 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=47.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cCcccccccccCCCCCeeEEEecccc---------cc
Q 017369 108 GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDKVLADDAPFDICSCQFAM---------HY 177 (372)
Q Consensus 108 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~fD~V~~~~~l---------~~ 177 (372)
.+++-+|++++.++.....+.... ... ...++... |..+ .-...|+|++.... ..
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~------~~~-~~~~i~~~~d~~~--------~~~~aDiVv~t~~~~~~~g~~r~~~ 91 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAV------EPL-ADIKVSITDDPYE--------AFKDADVVIITAGVGRKPGMGRLDL 91 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhh------hhc-cCcEEEECCchHH--------HhCCCCEEEECCCCCCCcCCCHHHH
Confidence 479999999877666555443211 001 11233222 2111 12458988884322 11
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHhh
Q 017369 178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (372)
Q Consensus 178 ~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~~ 218 (372)
+..+.+-...+.+.+.+.. |.|+++..+...+.+...+.+
T Consensus 92 ~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~ 131 (263)
T cd00650 92 LKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWR 131 (263)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHH
Confidence 1122234555666666655 889877665333333333333
No 448
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=49.30 E-value=1.4e+02 Score=31.73 Aligned_cols=176 Identities=12% Similarity=0.028 Sum_probs=93.9
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 155 (372)
.+|-=||+|+=+ ++..++..+. .|+.+|.+++.++.++++.........++..+ ..++++. .|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA--- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH---
Confidence 478889999733 3333444443 79999999999998877654211100000000 0112211 1111
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC--hHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+ +-++++.+-..+++.++.++++|+..|.-.+.. ...+...+. ....+.-++|
T Consensus 389 ------~~~~aDlVi-----Eav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~------~p~r~ig~Hf 451 (714)
T TIGR02437 389 ------GFDNVDIVV-----EAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALK------RPENFCGMHF 451 (714)
T ss_pred ------HhcCCCEEE-----EcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC------CcccEEEEec
Confidence 114567765 344566678889999999999999876654432 233322221 1222333332
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... .-. .+-+.+.-+ .---......++++..|...|...+.+-|+-..+
T Consensus 452 f~P~----------~~~----~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl 502 (714)
T TIGR02437 452 FNPV----------HRM----PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRV 502 (714)
T ss_pred CCCc----------ccC----ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHHHH
Confidence 2110 000 111111100 0122345667888999999999988888865554
No 449
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.29 E-value=69 Score=29.75 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCEEEEecCCccc---cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc----
Q 017369 84 RGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL---- 156 (372)
Q Consensus 84 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---- 156 (372)
.+..||==|.|.|- .+.++++.+. .++..|++++..++..+...+. + .+.....|+.+..-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~----------g-~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKI----------G-EAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhc----------C-ceeEEEecCCCHHHHHHH
Confidence 57899999999884 4555555554 8999999998888777766531 1 57888888876431
Q ss_pred -ccccCCCCCeeEEEecccc
Q 017369 157 -DKVLADDAPFDICSCQFAM 175 (372)
Q Consensus 157 -~~~~~~~~~fD~V~~~~~l 175 (372)
......-+..|+++.+.++
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHhcCCceEEEecccc
Confidence 0111134789999988644
No 450
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.21 E-value=64 Score=29.77 Aligned_cols=105 Identities=16% Similarity=0.087 Sum_probs=59.4
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 155 (372)
.+|-=||+|+=+ ++..++..+ ..|+.+|.+++.++.+.+++.+......++..+ ..+++ ...|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~--- 80 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLG--- 80 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHH---
Confidence 478889998622 344444443 479999999999998777654211100000000 01111 122221
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhc-CCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L-kpgG~li~~~ 206 (372)
.-...|+|+-. ++++.+-...++..+.+.+ +|+..+.-.+
T Consensus 81 ------~~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 81 ------DFADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ------HhCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 11456777643 3455566778889999988 7776665444
No 451
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=48.94 E-value=1.3e+02 Score=28.59 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=53.7
Q ss_pred CCCCCEEEEecCC-ccccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc--cc
Q 017369 82 ARRGDVVLDLACG-KGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (372)
Q Consensus 82 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~ 157 (372)
..++.+||=.|+| .|..+..+++..... +++++.+++..+.+++... ..++..+-.+.. +.
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~---------------~~v~~~~~~~~~~~l~ 249 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGA---------------THTVNAAKEDAVAAIR 249 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCC---------------ceEecCCcccHHHHHH
Confidence 3577888877664 344445555543334 9999999887777643211 111111111100 00
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
... ....+|+|+....- . ..+..+.+.|+++|.++..
T Consensus 250 ~~~-~~~~~d~vld~vg~-------~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 250 EIT-GGRGVDVVVEALGK-------P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HHh-CCCCCCEEEEeCCC-------H---HHHHHHHHHHhcCCEEEEE
Confidence 001 24569998753221 1 2567778899999998754
No 452
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=48.93 E-value=47 Score=31.14 Aligned_cols=100 Identities=21% Similarity=0.162 Sum_probs=60.8
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|.|. |.-....+.....+|+++|.+.... . . .+. ..++.+ .+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-------~---------~----~~~--~~~l~e-----ll-- 194 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-------N---------E----EYE--RVSLEE-----LL-- 194 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-------c---------c----Cce--eecHHH-----Hh--
Confidence 578999999986 6655566555556899999864210 0 0 011 112222 11
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~ 218 (372)
...|+|++..-+ +.+...-+=++....||||.+|| +.+.+.+.+++.++.
T Consensus 195 -~~sDvv~lh~Pl-----t~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 195 -KTSDIISIHAPL-----NEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred -hcCCEEEEeCCC-----CchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 457888764432 22222233356778899999888 456788888888775
No 453
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=48.66 E-value=1.1e+02 Score=28.04 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCCCEEEEecCCccc-------cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc
Q 017369 82 ARRGDVVLDLACGKGG-------DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (372)
Q Consensus 82 ~~~~~~VLDlGcG~G~-------~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 154 (372)
.+.+++||-+|.|+-. .+..|+- ..+-++-.|+.+- . ...-..+.+|+...
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP-~~ailvDnDi~d~--------v-------------SDa~~~~~~Dc~t~ 116 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLP-EDAILVDNDIRDY--------V-------------SDADQSIVGDCRTY 116 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS--TT-EEEEEESS----------B--------------SSSEEEES-GGGE
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCC-CCcEEEecchhhh--------c-------------cccCCceecccccc
Confidence 4568999999998632 3444432 2335777787541 1 12234578898876
Q ss_pred ccccccCCCCCeeEEEeccc---ccccC---CCHHH-HHHHHHHHHHhcCCCcEEEEEeC
Q 017369 155 HLDKVLADDAPFDICSCQFA---MHYSW---STEAR-ARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 155 ~~~~~~~~~~~fD~V~~~~~---l~~~~---~~~~~-~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.. +.++|+|++..- .+.+- .+.+. ..-+..-+...|+-||.+.+.+-
T Consensus 117 ~~------~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 117 MP------PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EE------SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC------CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 64 689999998653 11110 01111 23344556788999999887653
No 454
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=48.63 E-value=95 Score=25.14 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHh
Q 017369 83 RRGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 127 (372)
..+.+|+-+|||. |. .+..+...+...++.+|.+++..+...+..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3467899999974 22 223333333457999999987766654443
No 455
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=47.97 E-value=50 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEeCChHHHHHHHh
Q 017369 184 RARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (372)
Q Consensus 184 ~~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~l~ 217 (372)
--..+++-+++.|.|||.++++-.....-...+.
T Consensus 64 ~E~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~ 97 (170)
T PF06557_consen 64 LEDELYKLFSRYLEPGGRLFVEYVEDRETRRQLQ 97 (170)
T ss_dssp HHHHHHHHHHTT----SEEEEE-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCeEEEEEecCHHHHHHHH
Confidence 3457889999999999999998765544444443
No 456
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=47.78 E-value=91 Score=29.89 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=54.2
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEEC-cC----cc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DC----YE 153 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-D~----~~ 153 (372)
...++.+||=.|||. |..+..+++.... .+++++.+++..+.+++... . .++.. +. ..
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~--------------~-~~v~~~~~~~~~~~ 264 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA--------------D-YVFNPTKMRDCLSG 264 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--------------C-EEEcccccccccHH
Confidence 456788888887754 2233444444344 79999998876666554211 0 11110 00 00
Q ss_pred cccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
..+.... ....+|+|+....- ....+..+.+.|+++|.++..
T Consensus 265 ~~v~~~~-~g~gvDvvld~~g~---------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 265 EKVMEVT-KGWGADIQVEAAGA---------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred HHHHHhc-CCCCCCEEEECCCC---------cHHHHHHHHHHHHcCCEEEEE
Confidence 0010111 33569998854221 124567778889999998743
No 457
>PRK08655 prephenate dehydrogenase; Provisional
Probab=47.74 E-value=1.8e+02 Score=28.67 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=51.7
Q ss_pred EEEEec-CC-ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCC
Q 017369 87 VVLDLA-CG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (372)
Q Consensus 87 ~VLDlG-cG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 164 (372)
+|.=+| +| -|..+...+......|+++|.+++.......... +. ...+..+ .-.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g---------------v~-~~~~~~e--------~~~ 57 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG---------------VE-YANDNID--------AAK 57 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC---------------Ce-eccCHHH--------Hhc
Confidence 566776 55 3443333333333479999998766433222111 11 1112111 124
Q ss_pred CeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC-hHHHHHHHhh
Q 017369 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLRE 218 (372)
Q Consensus 165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~l~~ 218 (372)
..|+|+..-.. .....++..+...+++|..++ .+-. .......+.+
T Consensus 58 ~aDvVIlavp~-------~~~~~vl~~l~~~l~~~~iVi-DvsSvK~~~~~~l~~ 104 (437)
T PRK08655 58 DADIVIISVPI-------NVTEDVIKEVAPHVKEGSLLM-DVTSVKERPVEAMEE 104 (437)
T ss_pred cCCEEEEecCH-------HHHHHHHHHHHhhCCCCCEEE-EcccccHHHHHHHHH
Confidence 57988765433 344677888888888877544 3332 2334444443
No 458
>PRK06932 glycerate dehydrogenase; Provisional
Probab=47.60 E-value=51 Score=30.92 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-....++....+|+++|.+... .. ... ..++ .+.+
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~---------------~~~--~~~l-----~ell-- 195 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VC---------------REG--YTPF-----EEVL-- 195 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------cc---------------ccc--cCCH-----HHHH--
Confidence 478999999987 655556655555589998864310 00 000 1111 1111
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~ 218 (372)
...|+|++..-+ +++...-+=.+....||||.+|+ +.+.+.+.+.+.++.
T Consensus 196 -~~sDiv~l~~Pl-----t~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 196 -KQADIVTLHCPL-----TETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred -HhCCEEEEcCCC-----ChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 457888765433 22333333356778899999887 356788888888775
No 459
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=46.75 E-value=2e+02 Score=28.26 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=25.8
Q ss_pred EEEEecCCccccHHHHHH--------cCCCEEEEEeCChHHHHH
Q 017369 87 VVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIED 122 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~ 122 (372)
+|.=||.|+. ++..+.. .....++-+|++++-++.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~ 44 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI 44 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH
Confidence 5777899986 6666544 134689999999977765
No 460
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=46.58 E-value=1.9e+02 Score=27.26 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=55.4
Q ss_pred hCCCCCEEEEecCC-ccccHHHHHHcCCC-EEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACG-KGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
...++.+||-.|+| .|..+..+++.... .|++++.++...+.++. +. . ..++..+-... .+
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g-------------~-~~vv~~~~~~~~~~l 243 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FG-------------A-THTVNASEDDAVEAV 243 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hC-------------C-eEEeCCCCccHHHHH
Confidence 45678899888875 34455555555444 49999988887776643 21 0 11111111000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.. +.+...+|+++....- ...+..+.+.|+++|.++..
T Consensus 244 ~~-~~~~~~vd~vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 244 RD-LTDGRGADYAFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HH-HcCCCCCCEEEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 00 1124568988743221 13567788889999998754
No 461
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=46.57 E-value=1.1e+02 Score=28.67 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc----
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL---- 156 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---- 156 (372)
.++.+||-.|+|. |..+..+++. +...|++++.++...+.+.+ +.- ..++.. .+..+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~--------------~~~~~~--~~~~~~~~~ 236 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGA--------------DVVVNG--SDPDAAKRI 236 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC--------------cEEecC--CCccHHHHH
Confidence 3678898887753 4444555554 34478999998887777744 210 111111 11111
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.... . +.+|+|+..... ...+..+.+.|+++|.++.
T Consensus 237 ~~~~-~-~~~d~vid~~g~----------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 237 IKAA-G-GGVDAVIDFVNN----------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred HHHh-C-CCCcEEEECCCC----------HHHHHHHHHHhhcCCeEEE
Confidence 0011 2 268888753221 1356778889999999874
No 462
>PLN02928 oxidoreductase family protein
Probab=45.92 E-value=67 Score=30.64 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=60.4
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|.|. |.-....+.....+|+++|.+...-......+.. .. ........+... .+.+.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~--~L~el--- 223 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPN--------GD-VDDLVDEKGGHE--DIYEF--- 223 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccc--------cc-ccccccccCccc--CHHHH---
Confidence 468999999987 6555555554455899999874211110000000 00 000000001111 11111
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+. .+...-+=.+....||||.+|| +.+.+.+.+++.+..
T Consensus 224 l~~aDiVvl~lPlt-----~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 224 AGEADIVVLCCTLT-----KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred HhhCCEEEECCCCC-----hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 14579998755432 2222223356778899998777 345677888887765
No 463
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=45.83 E-value=1.7e+02 Score=26.85 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=30.9
Q ss_pred hCCCCCEEEEecCC--ccccHHHHHHcCCCEEEEEeCChHHHHHHHH
Q 017369 81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 81 ~~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 125 (372)
...++.+||-.|++ .|..+..++......++.++.++...+.++.
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 209 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE 209 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45577889988875 4545555555555578999988877766643
No 464
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=45.82 E-value=13 Score=34.52 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=41.4
Q ss_pred CCccccHHHHHH----cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCCeeE
Q 017369 93 CGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (372)
Q Consensus 93 cG~G~~~~~l~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~ 168 (372)
.|+|.+..++.+ .++..++.+|.++..+-..++.+..... ..++...+..+.+|+.+...-.........|+
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~----~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP----DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc----ccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 355666666654 3667899999999998888877631000 01122223445888876543222224458999
Q ss_pred EEeccccccc
Q 017369 169 CSCQFAMHYS 178 (372)
Q Consensus 169 V~~~~~l~~~ 178 (372)
|+-..++-|+
T Consensus 81 VfHaAA~KhV 90 (293)
T PF02719_consen 81 VFHAAALKHV 90 (293)
T ss_dssp EEE------H
T ss_pred EEEChhcCCC
Confidence 9998888876
No 465
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=45.60 E-value=19 Score=31.37 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCChHH---HHHHHhhhcC-CccCCeEEE
Q 017369 183 ARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREVEG-LAIGNSVYW 230 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~~~~~~---~~~~l~~~~~-~~~~~~~~~ 230 (372)
.-....+.++.++|||||.+++.+.+... +...+.+..+ ..+.+.+.|
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW 84 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIW 84 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheecccee
Confidence 34678899999999999999887755421 3444444333 444444333
No 466
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=45.34 E-value=4.1e+02 Score=28.33 Aligned_cols=176 Identities=11% Similarity=0.008 Sum_probs=93.9
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC--------cCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~ 155 (372)
.+|-=||+|+=+ ++..++..+ -.|+.+|.+++.++.+.++..+.......+..+. .++.+. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG-LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS--- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC-CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH---
Confidence 578899998733 333344343 3799999999999988776643211100001110 122211 1211
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC--hHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+ +-++++.+-..+++.++.++++|+..|.-.+.. ...+...+.. ...+.-++|
T Consensus 411 ------~~~~aDlVi-----EAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~------p~r~ig~Hf 473 (737)
T TIGR02441 411 ------GFKNADMVI-----EAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSR------PEKVIGMHY 473 (737)
T ss_pred ------HhccCCeeh-----hhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC------ccceEEEec
Confidence 113466664 445667788899999999999999877654433 2333322211 122333333
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCc-eeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCP-EWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~-e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... .-. .+-+.+.-+ .---......++++..|...|...+-+-|+-..+
T Consensus 474 f~P~----------~~m----~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi 524 (737)
T TIGR02441 474 FSPV----------DKM----QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRC 524 (737)
T ss_pred cCCc----------ccC----ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHH
Confidence 2211 000 111111100 0112345567788899999998888777765443
No 467
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=45.05 E-value=53 Score=28.57 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCC
Q 017369 84 RGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIA 116 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s 116 (372)
.+.+||=+|||. |. .+..++..+.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467999999984 44 3444555688899999987
No 468
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.74 E-value=1.9e+02 Score=26.16 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCCCEEEEecCC--ccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
.++.+||=.|++ .|..+..+++.....+++++.+++..+.+++ +.. ...+.. ..+ +
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~-------------~~~~~~--~~~--~---- 188 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGA-------------AEVVVG--GSE--L---- 188 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC-------------cEEEec--ccc--c----
Confidence 358899988873 4555555665555589999988887777765 320 111111 111 1
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
..+.+|+++....- ..+....+.|+++|.++.
T Consensus 189 -~~~~~d~vl~~~g~-----------~~~~~~~~~l~~~G~~v~ 220 (305)
T cd08270 189 -SGAPVDLVVDSVGG-----------PQLARALELLAPGGTVVS 220 (305)
T ss_pred -cCCCceEEEECCCc-----------HHHHHHHHHhcCCCEEEE
Confidence 22468888753221 245778899999999774
No 469
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=44.66 E-value=92 Score=26.05 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCCCEEEEecCCccccH-HHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccccc
Q 017369 83 RRGDVVLDLACGKGGDL-IKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (372)
Q Consensus 83 ~~~~~VLDlGcG~G~~~-~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 160 (372)
..+.+|.=.|+|..+.+ +.++...... ...+|.++. +.+. --.+..+.++.-+. +
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~----------K~G~-----~~PGt~ipI~~p~~--l------ 122 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL----------KQGK-----YLPGTHIPIVSPEE--L------ 122 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG----------GTTE-----E-TTT--EEEEGGG---------
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh----------hcCc-----ccCCCCCeECCHHH--H------
Confidence 35788999999987654 3333322322 457898772 1000 00011233332221 1
Q ss_pred CCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.....|+|+.. +-+| ...+++.+...++.||.|++-+|
T Consensus 123 -~~~~pd~vivl-aw~y-------~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 123 -KERKPDYVIVL-AWNY-------KDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp --SS--SEEEES--GGG-------HHHHHHHTHHHHHTT-EEEE-SS
T ss_pred -hhCCCCEEEEc-Chhh-------HHHHHHHHHHHHhcCCEEEEeCC
Confidence 23457887653 3333 45778888888899999998765
No 470
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=44.56 E-value=1.2e+02 Score=28.34 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=52.9
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCC-CEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccccc
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 158 (372)
...++.+||=.|+|. |..+..+++... ..+++++.++.....+++... ..-+.....+... .+..
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~-~i~~ 229 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA------------THTVNSAKGDAIE-QVLE 229 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------------CceeccccccHHH-HHHH
Confidence 345778887777643 223344444433 578889998877666654211 0001111111100 0000
Q ss_pred ccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.. ....+|+|+.... . ...+..+.+.|+++|.++.
T Consensus 230 ~~-~~~~~d~vld~~g------~----~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 230 LT-DGRGVDVVIEAVG------I----PATFELCQELVAPGGHIAN 264 (345)
T ss_pred Hh-CCCCCCEEEECCC------C----HHHHHHHHHhccCCcEEEE
Confidence 11 3356998875321 1 1346777799999999874
No 471
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.11 E-value=1.6e+02 Score=27.46 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=52.5
Q ss_pred HhCCCCCEEEEecC--CccccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 80 LYARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 80 ~~~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
....++.+||=.|+ +-|..+..+++.....+++++.+. ..+.+++ +. .. .+...+-.... .
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~-~g-------------~~-~~~~~~~~~~~-~ 235 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LG-------------AD-TVILRDAPLLA-D 235 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh-cC-------------Ce-EEEeCCCccHH-H
Confidence 34568899999987 335455556665555788887554 5555532 11 01 11111100000 0
Q ss_pred cccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
........+|+|+....- ..+..+.+.|+++|.++.
T Consensus 236 ~~~~~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 236 AKALGGEPVDVVADVVGG-----------PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred HHhhCCCCCcEEEecCCH-----------HHHHHHHHHhccCCEEEE
Confidence 001123569988753221 245677889999999864
No 472
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=43.84 E-value=1.7e+02 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=26.6
Q ss_pred CCCCEEEEecCCc-cccHHHHHH-cCCCEEEEEeCChHHHH
Q 017369 83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIE 121 (372)
Q Consensus 83 ~~~~~VLDlGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~ 121 (372)
.++.+|+-+|||. |......+. .+...|+.++.+.+..+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 4678999999985 333333333 34468999999876544
No 473
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.67 E-value=43 Score=31.15 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeC-Ch-HHHHHHH
Q 017369 183 ARARRALANVSALLRPGGTFIGTMP-DA-NVIIKKL 216 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~~-~~-~~~~~~l 216 (372)
..++.+|..+.++|+|||++++.+- +. +.+++..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~f 256 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNF 256 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHH
Confidence 5688999999999999999765543 33 4555543
No 474
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=43.51 E-value=2.3e+02 Score=26.81 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=29.6
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHH
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~ 125 (372)
.+.++.+||=.|+|. |..+..+++. +...+++++.+++..+.+++
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456788998887753 2233444443 34358899988888877754
No 475
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=43.32 E-value=43 Score=31.33 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCh--HHHHHH
Q 017369 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKK 215 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~~~~--~~~~~~ 215 (372)
..+..+|..+..+|+|||++++.+-++ +.+++.
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~ 251 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKN 251 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 457889999999999999977655443 455554
No 476
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.28 E-value=2.4e+02 Score=25.09 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=41.9
Q ss_pred CCCEEEEecCCcc-ccHHHHHH---cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc--
Q 017369 84 RGDVVLDLACGKG-GDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-- 157 (372)
Q Consensus 84 ~~~~VLDlGcG~G-~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 157 (372)
.+.++|-.|+++| ++...++. .....|+.++.++...+.+.+.... .. .+.++..|+.+..--
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----------~~-~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE----------LD-APIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh----------hc-cceEEecCcCCHHHHHH
Confidence 4678899997652 44333332 2334788888876443322222211 01 234567787653210
Q ss_pred ---cccCCCCCeeEEEecccc
Q 017369 158 ---KVLADDAPFDICSCQFAM 175 (372)
Q Consensus 158 ---~~~~~~~~fD~V~~~~~l 175 (372)
......+..|+++.+..+
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCcc
Confidence 011122678998887654
No 477
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=43.23 E-value=1e+02 Score=29.06 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=64.3
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|-=+|-|. |.-..+.++....+|...|.++. ....+.. ...+.. +.++
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~---------------~~~y~~--l~el-------- 197 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL---------------GARYVD--LDEL-------- 197 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc---------------Cceecc--HHHH--------
Confidence 577888887765 33334444444557999999875 2222221 122222 2211
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLREV 219 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~~ 219 (372)
-...|+|++..-+ +++...-+=.+....||||++|+ +.+.|...+++.++..
T Consensus 198 l~~sDii~l~~Pl-----t~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 198 LAESDIISLHCPL-----TPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHhCCEEEEeCCC-----ChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 1567888775544 33444444567788999999998 4567888999988875
No 478
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=42.68 E-value=2.3e+02 Score=26.25 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=55.4
Q ss_pred hCCCCCEEEEecCC-ccccHHHHHHcCCCE-EEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccc--cc
Q 017369 81 YARRGDVVLDLACG-KGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HL 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~ 156 (372)
.+.++.+||=.|+| .|..+..+++..... +++++-+++..+.+.+ +.. ..++..+-.+. .+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~-~g~--------------~~~~~~~~~~~~~~i 226 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK-LGA--------------DYTIDAAEEDLVEKV 226 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCC--------------cEEecCCccCHHHHH
Confidence 45678899888875 344555555554445 8888888887777643 210 11111111000 00
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.... ....+|+|+....- ...+..+.+.|+++|.++..
T Consensus 227 ~~~~-~~~~vd~vld~~~~----------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 227 RELT-DGRGADVVIVATGS----------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHHh-CCcCCCEEEECCCC----------hHHHHHHHHHhhcCCEEEEE
Confidence 0001 33458998753221 13566777889999998753
No 479
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.34 E-value=95 Score=25.60 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=55.1
Q ss_pred EEEEecCCccccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 87 VVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 87 ~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
+|.=+|+|.++.+....- ....+|+-...+++.++..++.-..... .....+..++.+ ..|+.+ . -..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~--~~~~~l~~~i~~-t~dl~~-a-------~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKY--LPGIKLPENIKA-TTDLEE-A-------LED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTT--STTSBEETTEEE-ESSHHH-H-------HTT
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCC--CCCcccCccccc-ccCHHH-H-------hCc
Confidence 467789998776554333 3445799999999888776664331000 000111223332 333322 1 145
Q ss_pred eeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 017369 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (372)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~ 205 (372)
.|+|+..--.+ ..+.+++++...|+++-.++..
T Consensus 70 ad~IiiavPs~-------~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 70 ADIIIIAVPSQ-------AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -SEEEE-S-GG-------GHHHHHHHHTTTSHTT-EEEET
T ss_pred ccEEEecccHH-------HHHHHHHHHhhccCCCCEEEEe
Confidence 68887654333 2567889999999777666643
No 480
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=42.00 E-value=40 Score=26.95 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=28.4
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEeccccc----ccCCCHHHHHHHHHHHHHhcCCCcEEE
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----YSWSTEARARRALANVSALLRPGGTFI 203 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~----~~~~~~~~~~~~l~~i~~~LkpgG~li 203 (372)
.+.+..+|+.+.--. -...||+|+....-- -+|+ ..+++.++++++|||.+.
T Consensus 32 ~L~L~~gDa~~~l~~----l~~~~Da~ylDgFsP~~nPelWs-----~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQ----LDARFDAWYLDGFSPAKNPELWS-----EELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHH----B-T-EEEEEE-SS-TTTSGGGSS-----HHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHh----CcccCCEEEecCCCCcCCcccCC-----HHHHHHHHHHhCCCcEEE
Confidence 355666666442100 135778777643110 1121 469999999999999774
No 481
>PLN02702 L-idonate 5-dehydrogenase
Probab=41.75 E-value=2.1e+02 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=30.6
Q ss_pred HhCCCCCEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHHHHHH
Q 017369 80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125 (372)
Q Consensus 80 ~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~ 125 (372)
....++.+||=+|+|. |..+..+++. +...++++|.++...+.+++
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3456788898887652 3344455543 44458899998877777665
No 482
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.89 E-value=2.8e+02 Score=25.22 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=86.5
Q ss_pred EEEEecCCc--cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccC-CC--------cCeEEEECcCcccc
Q 017369 87 VVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FS--------FPARLICGDCYEVH 155 (372)
Q Consensus 87 ~VLDlGcG~--G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~--------~~~~~~~~D~~~~~ 155 (372)
+|.=+|+|. +.++..++..+. .|+++|++++.++.++.+.........+ .+ +. .++.+ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~l~~-~~~~~--- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVK-KGKMTEADKEAALARITG-TTDLD--- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEE-eCCHH---
Confidence 577789885 224444444433 7999999999997765443211000000 00 00 01221 22221
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeCC--hHHHHHHHhhhcCCccCCeEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREVEGLAIGNSVYWIRL 233 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~~--~~~~~~~l~~~~~~~~~~~~~~i~f 233 (372)
.-...|+|+..- .++..-...++.++.+.++|+..++..+.. ...+...+. ....+...+|
T Consensus 79 ------~~~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~------~~~r~ig~h~ 141 (282)
T PRK05808 79 ------DLKDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATK------RPDKVIGMHF 141 (282)
T ss_pred ------HhccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhC------CCcceEEeec
Confidence 124578887532 122234468999999999998776443332 222222221 1122333333
Q ss_pred CchhhhcccCCCCCceeeEEEEecccccCceeeeehHHHHHHHHHcCcEEEEecChhHHHHHHh
Q 017369 234 DEEFADKKFKSSRPFGIQYKFHLEDAVDCPEWIVPFHIFKSLAEEYDLELVFVKNSHEFVHEYL 297 (372)
Q Consensus 234 ~~~~~~~~f~~~~~~g~~y~~~l~~~~~~~e~l~~~~~l~~l~~~~Gf~~v~~~~~~~~~~~~~ 297 (372)
-... ....-.. +...... ---..+.+..+++..|..++....-+.|+...+
T Consensus 142 ~~P~---------~~~~~ve--v~~g~~t--~~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri 192 (282)
T PRK05808 142 FNPV---------PVMKLVE--IIRGLAT--SDATHEAVEALAKKIGKTPVEVKNAPGFVVNRI 192 (282)
T ss_pred cCCc---------ccCccEE--EeCCCCC--CHHHHHHHHHHHHHcCCeeEEecCccChHHHHH
Confidence 2211 0000001 1100000 122345677889999999998877777765544
No 483
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=40.53 E-value=79 Score=32.08 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=59.5
Q ss_pred CCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 162 (372)
.+.+|.=+|+|. |.-....+.....+|+++|.+... +.+. .. .+... ++.++
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-~~---------------g~~~~--~l~el-------- 191 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-QL---------------GVELV--SLDEL-------- 191 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-hc---------------CCEEE--cHHHH--------
Confidence 478999999986 444444444444589999986421 1111 00 12222 33221
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHH-HHHHHhcCCCcEEEE----EeCChHHHHHHHhh
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIG----TMPDANVIIKKLRE 218 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~i~~~LkpgG~li~----~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+. +.-..++ .+....||||.+|+= .+.+.+.+.+.+..
T Consensus 192 l~~aDiV~l~lP~t------~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 192 LARADFITLHTPLT------PETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HhhCCEEEEccCCC------hHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 14579887754432 2233344 567888999988773 45677888887765
No 484
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.44 E-value=2e+02 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=27.8
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHH
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 126 (372)
.+|.=||+|.-+ ++..++..+ ..|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH
Confidence 468888998633 333333333 3799999999998887764
No 485
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=40.35 E-value=92 Score=29.38 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=60.3
Q ss_pred CCCEEEEecCCc-cccHHHHHH-cCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccC
Q 017369 84 RGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (372)
Q Consensus 84 ~~~~VLDlGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 161 (372)
.+.+|.=+|.|. |.-..+.+. ....+|++.|.....- ..... .+.+ .++.++
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~--~~~~~---------------~~~~--~~l~el------- 197 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE--AEERF---------------NARY--CDLDTL------- 197 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh--hHHhc---------------CcEe--cCHHHH-------
Confidence 568899999987 655555554 4444788888764211 00110 1221 133221
Q ss_pred CCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEE----EEeCChHHHHHHHhh
Q 017369 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI----GTMPDANVIIKKLRE 218 (372)
Q Consensus 162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li----~~~~~~~~~~~~l~~ 218 (372)
-...|+|++...+ +.+...-+=.+....||||.+|| +.+.+.+.+++.+..
T Consensus 198 -l~~sDvv~lh~pl-----t~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 198 -LQESDFVCIILPL-----TDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred -HHhCCEEEEeCCC-----ChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 1467999775443 22222223355778899998888 356788888888775
No 486
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.29 E-value=2e+02 Score=26.43 Aligned_cols=105 Identities=18% Similarity=0.114 Sum_probs=55.9
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCC--------cCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~ 155 (372)
.+|.=||+|.-+ ++..++.. ...|+.+|.+++.++.+.++.............+. .++.+ ..|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE--- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH---
Confidence 468888998643 33333333 33799999999988876654321000000000000 11221 12221
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.-...|+|+..- .+...-...+++.+...++|+..++..+
T Consensus 80 ------~~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 80 ------DLADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ------HhcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 114578887642 2222345677889999999988766333
No 487
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.74 E-value=2.7e+02 Score=24.74 Aligned_cols=79 Identities=13% Similarity=0.000 Sum_probs=43.1
Q ss_pred CCCEEEEecCC-ccccHHHHHH---cCCCEEEEEeCCh--HHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccc
Q 017369 84 RGDVVLDLACG-KGGDLIKWDK---AKIGYYVGIDIAE--GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (372)
Q Consensus 84 ~~~~VLDlGcG-~G~~~~~l~~---~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 157 (372)
.+.++|-.|+| ++++...+++ ....+|+.++.+. +.++...+... ..+.++..|+.+..--
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~i 72 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-------------EPAPVLELDVTNEEHL 72 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-------------CCCcEEeCCCCCHHHH
Confidence 35688999984 3444444433 2344788887653 33444333221 1356778888754310
Q ss_pred -----cccCCCCCeeEEEecccc
Q 017369 158 -----KVLADDAPFDICSCQFAM 175 (372)
Q Consensus 158 -----~~~~~~~~fD~V~~~~~l 175 (372)
......+.+|+++.+..+
T Consensus 73 ~~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 73 ASLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHHHcCCCcEEEEcccc
Confidence 001123679998887654
No 488
>PRK12742 oxidoreductase; Provisional
Probab=39.68 E-value=2.5e+02 Score=24.27 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCCEEEEecCCccccHHHHHH---cCCCEEEEEeC-ChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccc-ccc
Q 017369 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDK 158 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~---~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~ 158 (372)
.+.+||=.|++.| +...++. ....+|+.+.. +++.++...... .+.++..|+.+.. ...
T Consensus 5 ~~k~vlItGasgg-IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~---------------~~~~~~~D~~~~~~~~~ 68 (237)
T PRK12742 5 TGKKVLVLGGSRG-IGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET---------------GATAVQTDSADRDAVID 68 (237)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh---------------CCeEEecCCCCHHHHHH
Confidence 3568888887544 3333332 23336776654 343333322221 2445667775432 111
Q ss_pred ccCCCCCeeEEEeccccccc----CCCHHHHHH-----------HHHHHHHhcCCCcEEEEE
Q 017369 159 VLADDAPFDICSCQFAMHYS----WSTEARARR-----------ALANVSALLRPGGTFIGT 205 (372)
Q Consensus 159 ~~~~~~~fD~V~~~~~l~~~----~~~~~~~~~-----------~l~~i~~~LkpgG~li~~ 205 (372)
.....+.+|+++.+...... -.+.+++.. ++..+.+.++++|.++..
T Consensus 69 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 69 VVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred HHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 11122568988877543221 012223322 224555666777776643
No 489
>PLN02256 arogenate dehydrogenase
Probab=39.63 E-value=2e+02 Score=26.77 Aligned_cols=103 Identities=9% Similarity=-0.038 Sum_probs=53.7
Q ss_pred CCCCCEEEEecCCc-cc-cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccc
Q 017369 82 ARRGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (372)
Q Consensus 82 ~~~~~~VLDlGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 159 (372)
-....+|.=+|+|. |. ++..+... ...|+++|.++. .+.+.. . .+.. ..|..+.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~~~~-~~~a~~-~---------------gv~~-~~~~~e~----- 88 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSRSDY-SDIAAE-L---------------GVSF-FRDPDDF----- 88 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECccH-HHHHHH-c---------------CCee-eCCHHHH-----
Confidence 34567899999985 33 33333333 347999999863 222221 1 1211 1222111
Q ss_pred cCCCCCeeEEEecccccccCCCHHHHHHHHHHH-HHhcCCCcEEEEEeCCh-HHHHHHHhh
Q 017369 160 LADDAPFDICSCQFAMHYSWSTEARARRALANV-SALLRPGGTFIGTMPDA-NVIIKKLRE 218 (372)
Q Consensus 160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i-~~~LkpgG~li~~~~~~-~~~~~~l~~ 218 (372)
.....|+|+..-- ......++.++ ...++||. +++++-.. ..+++.+.+
T Consensus 89 --~~~~aDvVilavp-------~~~~~~vl~~l~~~~l~~~~-iviDv~SvK~~~~~~~~~ 139 (304)
T PLN02256 89 --CEEHPDVVLLCTS-------ILSTEAVLRSLPLQRLKRST-LFVDVLSVKEFPKNLLLQ 139 (304)
T ss_pred --hhCCCCEEEEecC-------HHHHHHHHHhhhhhccCCCC-EEEecCCchHHHHHHHHH
Confidence 1134788876332 23456777777 56677775 55555543 334455444
No 490
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.58 E-value=96 Score=30.10 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=47.0
Q ss_pred CEEEEecCCc-cccH-HHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCccccc-ccccCC
Q 017369 86 DVVLDLACGK-GGDL-IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD 162 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~-~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~ 162 (372)
.+||=||||. |... ..++..+..+|+..|-|.+..+.+..... .+++..+.|+.+.+- ...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------------~~v~~~~vD~~d~~al~~li-- 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------------GKVEALQVDAADVDALVALI-- 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------------ccceeEEecccChHHHHHHH--
Confidence 4789999965 3322 23334454689999999888887766542 258888889887532 1222
Q ss_pred CCCeeEEEecc
Q 017369 163 DAPFDICSCQF 173 (372)
Q Consensus 163 ~~~fD~V~~~~ 173 (372)
..+|+|+...
T Consensus 67 -~~~d~VIn~~ 76 (389)
T COG1748 67 -KDFDLVINAA 76 (389)
T ss_pred -hcCCEEEEeC
Confidence 3458887653
No 491
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=39.57 E-value=2e+02 Score=26.73 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred hCCCCCEEEEecCCc-cccHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcC-cccc--c
Q 017369 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--L 156 (372)
Q Consensus 81 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~--~ 156 (372)
...++.+||=.|||. |..+..+++....++++++-+++..+.+++ +.- ..++...- .+.. +
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------------~~~i~~~~~~~~~~~~ 226 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-LGA--------------VATVNASEVEDVAAAV 226 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-hCC--------------CEEEccccchhHHHHH
Confidence 345678898888753 334455555555589999999888777754 210 11111110 0000 0
Q ss_pred ccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
.... .. .+|+|+....- ...+....+.|+++|.++.
T Consensus 227 ~~~~-~~-~~d~vi~~~g~----------~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 227 RDLT-GG-GAHVSVDALGI----------PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred HHHh-CC-CCCEEEEcCCC----------HHHHHHHHHHhhcCCEEEE
Confidence 0001 22 68988754221 1356677888999998774
No 492
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=39.19 E-value=54 Score=30.51 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCh--HHHHHH
Q 017369 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKK 215 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~~~~--~~~~~~ 215 (372)
..+..+|..+..+|+|||++++.+-++ +.+++.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~ 247 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDRIVKR 247 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 457889999999999999987655443 455554
No 493
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.13 E-value=1.6e+02 Score=27.68 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=26.7
Q ss_pred CCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
...|+|+-. +.++.+-...++.++.+.++|+..+.-
T Consensus 78 ~~aD~ViEa-----v~E~~~~K~~~f~~l~~~~~~~~ilaS 113 (314)
T PRK08269 78 ADADLVFEA-----VPEVLDAKREALRWLGRHVDADAIIAS 113 (314)
T ss_pred ccCCEEEEC-----CcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 456877643 345667778899999999999987743
No 494
>PRK06223 malate dehydrogenase; Reviewed
Probab=39.01 E-value=2.2e+02 Score=26.27 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=24.5
Q ss_pred CEEEEecCCc-cccHHHHHHc-CCCEEEEEeCChHHHH
Q 017369 86 DVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIE 121 (372)
Q Consensus 86 ~~VLDlGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~ 121 (372)
.+|-=+|+|. |......+.. +...++.+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhH
Confidence 4788899988 6554444433 3228999999887653
No 495
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=38.94 E-value=4.1e+02 Score=26.83 Aligned_cols=105 Identities=10% Similarity=-0.046 Sum_probs=57.4
Q ss_pred CEEEEecCCccc--cHHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCC--------CcCeEEEECcCcccc
Q 017369 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVH 155 (372)
Q Consensus 86 ~~VLDlGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 155 (372)
.+|-=||+|+=+ ++..++..+ -.|+.+|.+++.++.+..+..........+..+ ..++.. ..|...
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~-- 81 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHA-- 81 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHH--
Confidence 568889998632 344444443 379999999999988766543210000000000 011221 122211
Q ss_pred cccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
-...|+|+.. ++++.+-...++..+...++|+..+...+
T Consensus 82 -------l~~aDlVIEa-----v~E~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 82 -------LADAGLVIEA-----IVENLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred -------hCCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 1357877653 34444556777888888888876655333
No 496
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=38.56 E-value=28 Score=32.27 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEeC
Q 017369 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (372)
Q Consensus 163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~~ 207 (372)
.+.||+|+....+-|++. .++..+++|+|.|++.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~---------p~l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK---------PELFQALAPDAVLVVETA 255 (289)
T ss_pred cCCCCEEEEhhhhHhhcc---------hHHHHHhCCCCEEEEEcc
Confidence 478999998876655432 127778899999998863
No 497
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=38.24 E-value=41 Score=31.48 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCh--HHHHHHH
Q 017369 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKKL 216 (372)
Q Consensus 183 ~~~~~~l~~i~~~LkpgG~li~~~~~~--~~~~~~l 216 (372)
..+..+|..+..+|+|||++++.+-++ +.+++..
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~ 253 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQF 253 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHH
Confidence 467889999999999999987766554 4455543
No 498
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.24 E-value=1.7e+02 Score=21.99 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=26.7
Q ss_pred CeEEEECcCcccccccccCCCCCeeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 017369 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (372)
Q Consensus 143 ~~~~~~~D~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~~~ 206 (372)
.+++...+..+..- ....+|+|+..-- ....+.++...+.+-|.=+..+
T Consensus 33 ~~~v~a~~~~~~~~-----~~~~~Dvill~pq----------i~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 33 PVKIAAGSYGAAGE-----KLDDADVVLLAPQ----------VAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred cEEEEEecHHHHHh-----hcCCCCEEEECch----------HHHHHHHHHHHhhhcCCCEEEe
Confidence 46666666554432 2246899986433 3345566666665555444444
No 499
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.10 E-value=2e+02 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=24.1
Q ss_pred CCCEEEEecCCccccHHHHHHc---CCCEEEEEeCCh
Q 017369 84 RGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAE 117 (372)
Q Consensus 84 ~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~ 117 (372)
....||-.||..|++...++.. ....|+++--+-
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRL 42 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc
Confidence 4568999999999987777652 333677765553
No 500
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.99 E-value=2.9e+02 Score=25.18 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=49.1
Q ss_pred EEEEecCCcccc-HHHHHHcCCCEEEEEeCChHHHHHHHHHhcCCCcccccccCCCcCeEEEECcCcccccccccCCCCC
Q 017369 87 VVLDLACGKGGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (372)
Q Consensus 87 ~VLDlGcG~G~~-~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 165 (372)
+|+=+|||.-+. +...+......|+.++-+++.++..++.... -. ...... ...... +.. ....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~--------~~-~~~~~~---~~~~~~--~~~-~~~~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLR--------LE-DGEITV---PVLAAD--DPA-ELGP 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCc--------cc-CCceee---cccCCC--Chh-HcCC
Confidence 688899987443 2222222334799999877666655432110 00 000000 000000 000 1257
Q ss_pred eeEEEecccccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 017369 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (372)
Q Consensus 166 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~LkpgG~li~ 204 (372)
+|+|+..--- .+...+++.+...+.++..++.
T Consensus 67 ~d~vila~k~-------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 67 QDLVILAVKA-------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CCEEEEeccc-------ccHHHHHHHHhhhcCCCCEEEE
Confidence 8988764332 2356788888888877766554
Done!