Query 017370
Match_columns 372
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 46136
Date Fri Mar 29 07:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02517 Abi: CAAX protease se 98.0 7.6E-06 1.6E-10 60.4 4.6 88 188-339 4-91 (91)
2 TIGR03008 pepcterm_CAAX CAAX p 95.4 0.018 3.8E-07 52.6 3.9 38 310-347 179-220 (222)
3 COG1266 Predicted metal-depend 95.0 0.05 1.1E-06 44.3 5.1 27 311-337 185-211 (226)
4 PF04604 L_biotic_typeA: Type- 67.6 3.1 6.7E-05 31.9 1.3 26 169-194 10-49 (51)
5 PF03116 NQR2_RnfD_RnfE: NQR2, 61.9 17 0.00036 34.9 5.3 86 161-256 2-104 (313)
6 PF13556 HTH_30: PucR C-termin 45.7 17 0.00037 26.3 2.1 19 347-365 21-39 (59)
7 PRK00816 rnfD electron transpo 43.6 43 0.00092 33.2 5.0 83 162-256 4-106 (350)
8 PF07219 HemY_N: HemY protein 38.2 49 0.0011 26.5 3.8 30 288-317 44-73 (108)
9 PF04995 CcmD: Heme exporter p 37.8 22 0.00048 25.4 1.6 29 338-366 15-43 (46)
10 PRK14713 multifunctional hydro 33.8 67 0.0015 32.2 4.7 41 119-159 31-72 (530)
11 TIGR00035 asp_race aspartate r 33.7 98 0.0021 27.4 5.3 51 310-365 136-186 (229)
12 smart00582 RPR domain present 33.6 33 0.00071 27.0 2.1 22 281-306 92-113 (121)
13 PF08172 CASP_C: CASP C termin 33.2 40 0.00086 31.7 2.9 28 322-366 75-102 (248)
14 KOG0835 Cyclin L [General func 33.0 11 0.00025 38.0 -0.7 16 314-329 23-38 (367)
15 PF12666 PrgI: PrgI family pro 28.6 26 0.00055 27.1 0.7 28 172-201 4-32 (93)
16 PF08285 DPM3: Dolichol-phosph 28.4 54 0.0012 26.9 2.6 36 330-365 45-83 (91)
17 PRK12757 cell division protein 27.9 62 0.0013 31.1 3.3 29 247-279 3-31 (256)
18 PLN03160 uncharacterized prote 25.8 85 0.0018 28.5 3.6 28 254-281 51-78 (219)
19 PRK09804 putative cryptic C4-d 25.6 38 0.00083 34.8 1.5 74 169-259 293-370 (455)
20 cd08316 Death_FAS_TNFRSF6 Deat 25.1 92 0.002 25.7 3.4 34 281-314 46-79 (97)
21 PF00076 RRM_1: RNA recognitio 23.6 61 0.0013 21.7 1.8 18 172-189 8-25 (70)
22 PF12725 DUF3810: Protein of u 22.5 1.5E+02 0.0033 28.4 4.8 77 229-359 12-88 (318)
23 PF12076 Wax2_C: WAX2 C-termin 22.3 42 0.00091 30.8 1.0 37 265-302 89-125 (164)
24 PF02525 Flavodoxin_2: Flavodo 21.7 1.5E+02 0.0032 25.0 4.1 47 297-361 149-197 (199)
25 PRK10927 essential cell divisi 20.9 1.3E+02 0.0028 30.2 4.0 30 240-269 31-60 (319)
26 PF00536 SAM_1: SAM domain (St 20.8 80 0.0017 22.3 2.0 14 350-363 51-64 (64)
27 COG0798 ACR3 Arsenite efflux p 20.8 29 0.00063 34.7 -0.4 42 272-316 184-226 (342)
28 COG3140 Uncharacterized protei 20.7 84 0.0018 25.1 2.2 23 348-370 9-31 (60)
29 PF01117 Aerolysin: Aerolysin 20.6 69 0.0015 32.0 2.2 21 302-324 16-36 (360)
30 PF11160 DUF2945: Protein of u 20.5 59 0.0013 25.3 1.3 15 261-275 30-44 (62)
No 1
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=98.03 E-value=7.6e-06 Score=60.38 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=65.1
Q ss_pred chhhhHHhhhccchhHHHHHHHHhhhhHHHHhhCCCcccccccchhhcccCCCcchHHHHHHHHHHHHHhcceeeeeeCC
Q 017370 188 PWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSP 267 (372)
Q Consensus 188 pwQFiliVaAssvgEElFyR~AvQGaladiflrgt~l~~d~~GmasLtgv~PpFvPFAq~fAavltaaLTGslYyva~sp 267 (372)
.+.++..+....+.||++||..+|..+.+. .+. ..+.++++.+=|.+.+..
T Consensus 4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~--~~~------------------------~~a~~is~~~f~~~H~~~--- 54 (91)
T PF02517_consen 4 LIFFLVMILIAPIAEELFFRGFLFNRLRRR--FNP------------------------WFAILISSLLFALWHLPN--- 54 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cch------------------------HHHHHHHHHHHHHHHHhh---
Confidence 466777888899999999999998877654 110 456666666666554432
Q ss_pred CCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHhcceeeeeCcchhhHHHhhhhhhh
Q 017370 268 KDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAV 339 (372)
Q Consensus 268 kDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkKIYSPLlEglLalYLGfEWiqT~NILAPiiTHgiYS~V 339 (372)
-.. -+.-.++|+.+|.-+..|+|+++|++.|+++..+
T Consensus 55 ----------------------------------~~~-~~~~~~~g~~~~~~~~~t~sl~~~i~~H~~~n~~ 91 (91)
T PF02517_consen 55 ----------------------------------GPQ-FIYAFLFGLLFGYLYLRTGSLWAAIIAHALWNLV 91 (91)
T ss_pred ----------------------------------hHH-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence 001 2666788999999999999999999999998653
No 2
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=95.37 E-value=0.018 Score=52.57 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=30.4
Q ss_pred HHHHHHhcceeeeeCcchhhHHHhhhhh----hhhcccccch
Q 017370 310 GLLALYLGFEWIQTNNILAPIITHGIYS----AVILGHGLWK 347 (372)
Q Consensus 310 glLalYLGfEWiqT~NILAPiiTHgiYS----~VvlGhGLwk 347 (372)
.+.|+.+|.-+..|+|+..||+.|.+.. ..|+.-|-|.
T Consensus 179 ~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ll~~~vl~~~~w~ 220 (222)
T TIGR03008 179 LIAGLAYNLLLLRTGSIMACILAHAVTNGLLGLWVLLTGAWS 220 (222)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 4558889999999999999999998754 4566677664
No 3
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=95.00 E-value=0.05 Score=44.30 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=21.3
Q ss_pred HHHHHhcceeeeeCcchhhHHHhhhhh
Q 017370 311 LLALYLGFEWIQTNNILAPIITHGIYS 337 (372)
Q Consensus 311 lLalYLGfEWiqT~NILAPiiTHgiYS 337 (372)
..++-+|+-+.-|+|+..||+.|..+.
T Consensus 185 ~~gli~~~~~~~t~~l~~~i~~H~~~N 211 (226)
T COG1266 185 IAGLILGLLYLRTGSLWVPILLHALIN 211 (226)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 344455555579999999999999998
No 4
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=67.63 E-value=3.1 Score=31.86 Aligned_cols=26 Identities=38% Similarity=0.864 Sum_probs=21.9
Q ss_pred ccccccchHHHHHHhhc--------------CCchhhhHH
Q 017370 169 RAIRDVEDEELRSFFYG--------------MSPWQFVLI 194 (372)
Q Consensus 169 RAIRDVEDeEL~~fF~G--------------MspwQFili 194 (372)
-++..|+||||...--| |..|||++-
T Consensus 10 ~~lqevs~eELd~ilGg~g~Gv~~Tis~eC~~ns~q~~ft 49 (51)
T PF04604_consen 10 NSLQEVSDEELDQILGGAGNGVIKTISHECRMNSWQFIFT 49 (51)
T ss_pred HHHHhcCHHHHHHHhCCCCCCceeecccccccccHHHHhc
Confidence 46778999999999988 777999873
No 5
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=61.92 E-value=17 Score=34.94 Aligned_cols=86 Identities=27% Similarity=0.412 Sum_probs=54.7
Q ss_pred hhccCcccccccccchHH------------HHHHhhcCCchhhhHHhhhccchhHHHHHHHHhhhhHHHHhhCCCc--cc
Q 017370 161 VVKLSPHARAIRDVEDEE------------LRSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDF--LT 226 (372)
Q Consensus 161 VVk~sp~ARAIRDVEDeE------------L~~fF~GMspwQFiliVaAssvgEElFyR~AvQGaladiflrgt~l--~~ 226 (372)
+++.+||.|.=+|+..-- .--|++|+.+.-.+++-.++++.=|..+.. +++++. .+
T Consensus 2 ~~~~sPhi~~~~~~~~~M~~VilaLlP~~~~~~~~fG~~~l~~~~~av~~a~l~E~l~~~----------l~~~~~~~~~ 71 (313)
T PF03116_consen 2 VVSSSPHIRDGRSTQKIMWDVILALLPALLASIYFFGFRALLVILVAVLTAVLAEALFAK----------LRKRPIPTLK 71 (313)
T ss_pred ccCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCCCCC
Confidence 688999999888776532 124788998877777666666666655542 344443 44
Q ss_pred ccccchh---hcccCCCcchHHHHHHHHHHHHH
Q 017370 227 DAQGMAS---LTGVLPPFVPFAQAFAAVITAAL 256 (372)
Q Consensus 227 d~~Gmas---Ltgv~PpFvPFAq~fAavltaaL 256 (372)
|-..+.. +.-.+||.+|+-+.+.++.-|.+
T Consensus 72 d~sa~vTglLlal~LP~~~P~w~v~ig~~~aI~ 104 (313)
T PF03116_consen 72 DLSAVVTGLLLALLLPPSVPLWVVAIGSFFAIV 104 (313)
T ss_pred CccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 4332221 23358999999877666555544
No 6
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=45.72 E-value=17 Score=26.35 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.8
Q ss_pred hhchhhHHHHHHHHHHhhc
Q 017370 347 KIHDHRRRLHQRIQRLELE 365 (372)
Q Consensus 347 kihdhr~rlRqRi~~i~~~ 365 (372)
++|=||.-++.|+++|+.-
T Consensus 21 ~L~iHrNTl~yRl~ki~~l 39 (59)
T PF13556_consen 21 ALHIHRNTLRYRLKKIEEL 39 (59)
T ss_dssp HHTS-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5789999999999999864
No 7
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=43.61 E-value=43 Score=33.21 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=50.2
Q ss_pred hccCcccccccccchHHH------------HHHhhcCCchhhhHHhhhccchhHHHHHHHHhhhhHHHHhhCCCc---cc
Q 017370 162 VKLSPHARAIRDVEDEEL------------RSFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADIFLRGTDF---LT 226 (372)
Q Consensus 162 Vk~sp~ARAIRDVEDeEL------------~~fF~GMspwQFiliVaAssvgEElFyR~AvQGaladiflrgt~l---~~ 226 (372)
|..|||.|.=+++..-=+ --||+|+.+..-+++-.++++.-|..+.. +|+++. .+
T Consensus 4 v~~sPh~~~~~s~~~iM~~VllALlP~~~~~i~~fG~~al~~~~~~v~~av~~E~l~~k----------~~~k~~~~~l~ 73 (350)
T PRK00816 4 IASSPHTHNQRQTSRIMLWVILAALPGIAAQTYFFGWGTLIQILLAIVTALLAEAAVLK----------LRKRPVAATLK 73 (350)
T ss_pred CCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HhCCCCccccC
Confidence 578999986555543211 12899998876666666666666654442 234332 23
Q ss_pred ccccchhhcc-----cCCCcchHHHHHHHHHHHHH
Q 017370 227 DAQGMASLTG-----VLPPFVPFAQAFAAVITAAL 256 (372)
Q Consensus 227 d~~GmasLtg-----v~PpFvPFAq~fAavltaaL 256 (372)
| |=+-+|| .+||.+|+-+...++.-|.+
T Consensus 74 D--~Sa~vTglLlal~lPp~~P~W~~~iG~~fAI~ 106 (350)
T PRK00816 74 D--NSALLTALLLAVSIPPLAPWWMIVIGTVFAII 106 (350)
T ss_pred c--ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 3 3445555 47999998776555544433
No 8
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=38.17 E-value=49 Score=26.50 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhHhhhHHHHHHHHHHhc
Q 017370 288 KKLFAAWYERRQMKKIYSPLLEGLLALYLG 317 (372)
Q Consensus 288 kklf~aWyErRqmkKIYSPLlEglLalYLG 317 (372)
-..+..|.++|..+|=+.=|.+|++++--|
T Consensus 44 p~~~~~~~~~rr~~ka~~al~~Gl~al~~G 73 (108)
T PF07219_consen 44 PSRVRRWRRRRRRRKAQRALSRGLIALAEG 73 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 356889999999999999999999997654
No 9
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=37.80 E-value=22 Score=25.38 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=17.7
Q ss_pred hhhcccccchhchhhHHHHHHHHHHhhcc
Q 017370 338 AVILGHGLWKIHDHRRRLHQRIQRLELEG 366 (372)
Q Consensus 338 ~VvlGhGLwkihdhr~rlRqRi~~i~~~~ 366 (372)
.++++==++-..-.|+++++++++++..+
T Consensus 15 ~~~l~~l~~~~~~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 15 ALVLAGLIVWSLRRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444334445556677888888877655
No 10
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=33.75 E-value=67 Score=32.17 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=28.7
Q ss_pred ceeeeeecccCCCCCCCHH-HHHhccCCChhhHHHHhhhccc
Q 017370 119 FICSITGVDSMGGFHPSLD-AIVEGLGYAAPPIMALLFILDD 159 (372)
Q Consensus 119 fIC~~tGiD~~GGF~~Sl~-ai~~GlGYA~pPimaLLFIldD 159 (372)
.|+.|.|.|+.||--+.-| .+++.+|.-.-++.--+...+.
T Consensus 31 ~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t 72 (530)
T PRK14713 31 RVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNT 72 (530)
T ss_pred eEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecC
Confidence 5789999999999877766 3677888554454444444544
No 11
>TIGR00035 asp_race aspartate racemase.
Probab=33.73 E-value=98 Score=27.36 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHhcceeeeeCcchhhHHHhhhhhhhhcccccchhchhhHHHHHHHHHHhhc
Q 017370 310 GLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELE 365 (372)
Q Consensus 310 glLalYLGfEWiqT~NILAPiiTHgiYS~VvlGhGLwkihdhr~rlRqRi~~i~~~ 365 (372)
..|.-+ |++.++-..-+.+.|.++||..+--| +..+-++.+++-++++...
T Consensus 136 ~~l~~~-g~~v~~p~~~~~~~i~~~i~~~~~~g----~~~~~~~~l~~~~~~l~~~ 186 (229)
T TIGR00035 136 REMKKH-GIEIVTPDKEEQEAIMSGIYDEVKAG----NIELGRELLLKIAKELEER 186 (229)
T ss_pred HHHHHC-CCEEECCCHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHhC
Confidence 334333 78888877788999999999876666 3367778899888888644
No 12
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=33.61 E-value=33 Score=26.97 Aligned_cols=22 Identities=27% Similarity=0.789 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHHHhhhHhhhH
Q 017370 281 RSGREDLKKLFAAWYERRQMKKIYSP 306 (372)
Q Consensus 281 ~~~r~dlkklf~aWyErRqmkKIYSP 306 (372)
...++.++|++.-|.+| .||+|
T Consensus 92 ~~~~~ki~kll~iW~~~----~iF~~ 113 (121)
T smart00582 92 DETKKKIRRLLNIWEER----GIFPP 113 (121)
T ss_pred HHHHHHHHHHHHHHhcC----CCCCH
Confidence 35589999999999997 57766
No 13
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.24 E-value=40 Score=31.68 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=22.4
Q ss_pred eeCcchhhHHHhhhhhhhhcccccchhchhhHHHHHHHHHHhhcc
Q 017370 322 QTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRIQRLELEG 366 (372)
Q Consensus 322 qT~NILAPiiTHgiYS~VvlGhGLwkihdhr~rlRqRi~~i~~~~ 366 (372)
..++=|-|||| .+|.|.|+|.++|+.|-
T Consensus 75 ~~~~siLpIVt-----------------sQRDRFR~Rn~ELE~el 102 (248)
T PF08172_consen 75 GGDSSILPIVT-----------------SQRDRFRQRNAELEEEL 102 (248)
T ss_pred CCcccHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 55666777777 48999999999998764
No 14
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=33.04 E-value=11 Score=37.98 Aligned_cols=16 Identities=44% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHhcceeeeeCcchhh
Q 017370 314 LYLGFEWIQTNNILAP 329 (372)
Q Consensus 314 lYLGfEWiqT~NILAP 329 (372)
.|||.||||+.-||--
T Consensus 23 ~~LG~e~Iqea~ILL~ 38 (367)
T KOG0835|consen 23 RILGCELIQEAGILLN 38 (367)
T ss_pred HHHhHHHHHhhhHhhc
Confidence 5999999999999853
No 15
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=28.56 E-value=26 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.673 Sum_probs=21.5
Q ss_pred cccch-HHHHHHhhcCCchhhhHHhhhccch
Q 017370 172 RDVED-EELRSFFYGMSPWQFVLIVAASSVG 201 (372)
Q Consensus 172 RDVED-eEL~~fF~GMspwQFiliVaAssvg 201 (372)
+|+++ || ..|.|+|--|++.++++..++
T Consensus 4 kdi~~~e~--ki~~GlT~RQl~~l~~~~~~~ 32 (93)
T PF12666_consen 4 KDISKYEE--KIFFGLTLRQLICLAIGALVG 32 (93)
T ss_pred cchhhccc--hhccCCCHHHHHHHHHHHHHH
Confidence 35555 43 678899999999998887766
No 16
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.43 E-value=54 Score=26.88 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=28.4
Q ss_pred HHHhhhhhhhhcccccchhchhh---HHHHHHHHHHhhc
Q 017370 330 IITHGIYSAVILGHGLWKIHDHR---RRLHQRIQRLELE 365 (372)
Q Consensus 330 iiTHgiYS~VvlGhGLwkihdhr---~rlRqRi~~i~~~ 365 (372)
++.-|.||...+|-|++..||.- +.|.+-|++-|.+
T Consensus 45 Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~d 83 (91)
T PF08285_consen 45 LVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKAD 83 (91)
T ss_pred HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999864 4566667666554
No 17
>PRK12757 cell division protein FtsN; Provisional
Probab=27.93 E-value=62 Score=31.14 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcceeeeeeCCCCCceEEeeccc
Q 017370 247 AFAAVITAALTGSLYYVATSPKDPTYVVAPVLR 279 (372)
Q Consensus 247 ~fAavltaaLTGslYyva~spkDPtYvvaPv~~ 279 (372)
++|+++...+.|.|||++...||. +|++.
T Consensus 3 alava~lv~f~gGLyfi~h~k~~~----~~~~~ 31 (256)
T PRK12757 3 ALAVAVLVTFIGGLYFITHNKKEE----APLLP 31 (256)
T ss_pred HHHHHHHHHHhhheEEEecCCCCC----CCccc
Confidence 578899999999999999987764 45554
No 18
>PLN03160 uncharacterized protein; Provisional
Probab=25.80 E-value=85 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHhcceeeeeeCCCCCceEEeecccCc
Q 017370 254 AALTGSLYYVATSPKDPTYVVAPVLRSR 281 (372)
Q Consensus 254 aaLTGslYyva~spkDPtYvvaPv~~s~ 281 (372)
+++.+.++|..--||||+|-|..+-=++
T Consensus 51 ~~v~~~l~~~vfrPk~P~~~v~~v~l~~ 78 (219)
T PLN03160 51 ATTILVLVFTVFRVKDPVIKMNGVTVTK 78 (219)
T ss_pred HHHHHheeeEEEEccCCeEEEEEEEEee
Confidence 7777888999999999999998875443
No 19
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=25.59 E-value=38 Score=34.83 Aligned_cols=74 Identities=31% Similarity=0.504 Sum_probs=39.4
Q ss_pred ccccccchHHHHHHhhcCCchhhh----HHhhhccchhHHHHHHHHhhhhHHHHhhCCCcccccccchhhcccCCCcchH
Q 017370 169 RAIRDVEDEELRSFFYGMSPWQFV----LIVAASSVGEELFYRAAVQGALADIFLRGTDFLTDAQGMASLTGVLPPFVPF 244 (372)
Q Consensus 169 RAIRDVEDeEL~~fF~GMspwQFi----liVaAssvgEElFyR~AvQGaladiflrgt~l~~d~~GmasLtgv~PpFvPF 244 (372)
|..+.+ -|++..||.||+ -+|. |||||+ .|=----.=++-|.++..- ++. | +.| .+.+.
T Consensus 293 r~~k~~-~~~~~~ff~GMG-~~f~~VV~LIVAA~-----vFa~GL~aiG~Id~Li~~~---~~~-g---~g~---~~~~l 355 (455)
T PRK09804 293 HNLRET-MDDVQAFFDGMG-TQFANVVTLVVAGE-----IFAKGLTTIGTVDAVIRGA---EHS-G---LGG---IGVMI 355 (455)
T ss_pred ccchhH-HHHHHHHHHHHH-HHHHHHHHHHHhHH-----HHHhHHHHhhHHHHHHHHH---HhC-C---Cch---HHHHH
Confidence 333444 357999999999 7776 566664 3322222234556655331 111 1 111 13334
Q ss_pred HHHHHHHHHHHHhcc
Q 017370 245 AQAFAAVITAALTGS 259 (372)
Q Consensus 245 Aq~fAavltaaLTGs 259 (372)
.=.....+.+.+|||
T Consensus 356 v~~~i~~l~a~l~GS 370 (455)
T PRK09804 356 IMALVIAICAIVMGS 370 (455)
T ss_pred HHHHHHHHHHhhhcC
Confidence 445556667777776
No 20
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=25.09 E-value=92 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHH
Q 017370 281 RSGREDLKKLFAAWYERRQMKKIYSPLLEGLLAL 314 (372)
Q Consensus 281 ~~~r~dlkklf~aWyErRqmkKIYSPLlEglLal 314 (372)
++.+|.--+++.+||++--++--|.-|++.|-..
T Consensus 46 ~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~ 79 (97)
T cd08316 46 QDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKA 79 (97)
T ss_pred CChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHc
Confidence 4557888999999999999999999999888663
No 21
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=23.56 E-value=61 Score=21.69 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=15.0
Q ss_pred cccchHHHHHHhhcCCch
Q 017370 172 RDVEDEELRSFFYGMSPW 189 (372)
Q Consensus 172 RDVEDeEL~~fF~GMspw 189 (372)
.|++++||+++|.-.++-
T Consensus 8 ~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 8 PDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp TTSSHHHHHHHHHTTSTE
T ss_pred CcCCHHHHHHHHHHhhhc
Confidence 378999999999887764
No 22
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.49 E-value=1.5e+02 Score=28.39 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=45.8
Q ss_pred ccchhhcccCCCcchHHHHHHHHHHHHHhcceeeeeeCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhHHH
Q 017370 229 QGMASLTGVLPPFVPFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSPLL 308 (372)
Q Consensus 229 ~GmasLtgv~PpFvPFAq~fAavltaaLTGslYyva~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkKIYSPLl 308 (372)
+.+..++|.+| +++++.+-+++...+-..++ .-+|+++..|..++ ..=++
T Consensus 12 ~~l~~~~g~~P--FSvgdi~~~~~il~ll~~~~-----------------------~~~~~~~k~~~~~~-----l~~~~ 61 (318)
T PF12725_consen 12 KLLRRLFGWFP--FSVGDILYYLLILFLLYYLI-----------------------RLIRKIFKKKKRFK-----LLNIL 61 (318)
T ss_pred HHHHHhccCcC--hhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHhhhhHHH-----HHHHH
Confidence 45667888887 46778877766655544433 23455555555444 33344
Q ss_pred HHHHHHHhcceeeeeCcchhhHHHhhhhhhhhcccccchhchhhHHHHHHH
Q 017370 309 EGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKIHDHRRRLHQRI 359 (372)
Q Consensus 309 EglLalYLGfEWiqT~NILAPiiTHgiYS~VvlGhGLwkihdhr~rlRqRi 359 (372)
..++-+|+-| |.+|-+++||.-|-+|.
T Consensus 62 ~~~~~~y~~F------------------------~~~WGlNY~R~pl~~~l 88 (318)
T PF12725_consen 62 FFLSVLYFLF------------------------YLLWGLNYYRPPLSERL 88 (318)
T ss_pred HHHHHHHHHH------------------------HHHhhhhcCCcCHHHHc
Confidence 4555555554 45677777776666554
No 23
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=22.32 E-value=42 Score=30.82 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=32.1
Q ss_pred eCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhH
Q 017370 265 TSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKK 302 (372)
Q Consensus 265 ~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkK 302 (372)
-..||=||--+|.|+-...-+|+..+ |.|.+||-|--
T Consensus 89 ~~RkDC~Y~~tPAM~~P~~~~nl~sC-EnwlpRrVmsA 125 (164)
T PF12076_consen 89 KVRKDCTYHSTPAMKVPKSMENLHSC-ENWLPRRVMSA 125 (164)
T ss_pred HHhCCCcccCcccccCChhhhhhhhh-hccchhhHHHH
Confidence 45799999999999999888888765 88999998853
No 24
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=21.74 E-value=1.5e+02 Score=25.03 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHhhhHhhhHHHHHHHHHHhcceeeeeCcchhhHHHhhhhhhhhcccccchh--chhhHHHHHHHHH
Q 017370 297 RRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVILGHGLWKI--HDHRRRLHQRIQR 361 (372)
Q Consensus 297 rRqmkKIYSPLlEglLalYLGfEWiqT~NILAPiiTHgiYS~VvlGhGLwki--hdhr~rlRqRi~~ 361 (372)
.+.|+.+..| +++++ -|+|++|+++ +.-+|+... .+.+++..+|+++
T Consensus 149 ~~~~~~~~~~-~~~~~-~~~G~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
T PF02525_consen 149 GRSMDHLLPY-LRGIL-KFCGIKDVES----------------FSFEGVDNPDREEALEKALERAAE 197 (199)
T ss_dssp TSHHHHHHHH-HHHHH-HHTTEEEEEE----------------EEEESTTTCCHHHHHHHHHHHHHH
T ss_pred CCChhhhHHH-HHHHH-HhCCCceeeE----------------EEEeCCCCCChHHHHHHHHHHHHh
Confidence 4577777777 67777 8999999975 233555421 4556666666654
No 25
>PRK10927 essential cell division protein FtsN; Provisional
Probab=20.91 E-value=1.3e+02 Score=30.19 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHHHHhcceeeeeeCCCC
Q 017370 240 PFVPFAQAFAAVITAALTGSLYYVATSPKD 269 (372)
Q Consensus 240 pFvPFAq~fAavltaaLTGslYyva~spkD 269 (372)
-+-|-.=++|+++..++.|.|||+....|+
T Consensus 31 ~~~~~m~alAvavlv~fiGGLyFith~k~~ 60 (319)
T PRK10927 31 AVSPAMVAIAAAVLVTFIGGLYFITHHKKE 60 (319)
T ss_pred CcchHHHHHHHHHHHHHhhheEEEecCCCC
Confidence 334455688999999999999999987765
No 26
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=20.82 E-value=80 Score=22.26 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHh
Q 017370 350 DHRRRLHQRIQRLE 363 (372)
Q Consensus 350 dhr~rlRqRi~~i~ 363 (372)
.||+||.+.|+++|
T Consensus 51 ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 51 GHRKKILRAIQKLK 64 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 48999999998876
No 27
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=20.75 E-value=29 Score=34.74 Aligned_cols=42 Identities=38% Similarity=0.595 Sum_probs=30.9
Q ss_pred eEEeecccCccchHHHHHHH-HHHHHHHhhhHhhhHHHHHHHHHHh
Q 017370 272 YVVAPVLRSRSGREDLKKLF-AAWYERRQMKKIYSPLLEGLLALYL 316 (372)
Q Consensus 272 YvvaPv~~s~~~r~dlkklf-~aWyErRqmkKIYSPLlEglLalYL 316 (372)
|+..|..-+.--|.-+.|-. ..|||+|-+.|| ||+ .++|+|+
T Consensus 184 yl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~i-spi--~ligLl~ 226 (342)
T COG0798 184 YLGIPLIAGVLTRYILIKKKGREWYESRFLPKI-SPI--ALIGLLL 226 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhc-ChH--HHHHHHH
Confidence 77889888777777665554 469999998886 665 3566665
No 28
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=84 Score=25.08 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.1
Q ss_pred hchhhHHHHHHHHHHhhccCCCC
Q 017370 348 IHDHRRRLHQRIQRLELEGNDSD 370 (372)
Q Consensus 348 ihdhr~rlRqRi~~i~~~~~ns~ 370 (372)
-|.+.++--.|||+++.++.+|-
T Consensus 9 tHeqQQ~AVE~Iq~lMaeGmSsG 31 (60)
T COG3140 9 THEQQQKAVERIQELMAEGMSSG 31 (60)
T ss_pred cHHHHHHHHHHHHHHHHccccch
Confidence 38899999999999999998763
No 29
>PF01117 Aerolysin: Aerolysin toxin; InterPro: IPR005830 This family represents the pore forming lobe of aerolysin, and the related toxins haemolysin and the leukocidin S subunit. Aerolysin [] is a cytolytic toxin exported by Aeromonas hydrophila, a Gram-negative bacterium associated with diarrhoeal diseases and deep wound infections []. The mature toxin binds to eukaryotic cells and aggregates to form holes (approximately 3 nm in diameter) leading to the destruction of the membrane permeability barrier and osmotic lysis. The structure of proaerolysin has been determined to 2.8A resolution and shows the protoxin to adopt a novel fold []. Images of an aerolysin oligomer derived from electron microscopy have helped to construct a model of the protein and to outline a mechanism by which it might insert into lipid bilayers to form ion channels [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 3G4N_B 3C0N_B 3C0O_B 1PRE_A 1Z52_B 3C0M_A 3G4O_A.
Probab=20.64 E-value=69 Score=32.01 Aligned_cols=21 Identities=43% Similarity=0.947 Sum_probs=15.2
Q ss_pred HhhhHHHHHHHHHHhcceeeeeC
Q 017370 302 KIYSPLLEGLLALYLGFEWIQTN 324 (372)
Q Consensus 302 KIYSPLlEglLalYLGfEWiqT~ 324 (372)
.++.|| ..||-||||.|+--+
T Consensus 16 ~firp~--a~LAh~LGy~W~gg~ 36 (360)
T PF01117_consen 16 DFIRPL--AYLAHYLGYAWVGGN 36 (360)
T ss_dssp TTHHHH--HHHHHHTTBS--S-T
T ss_pred hhhhhH--HHHHhhhCceEECCC
Confidence 678898 578999999998655
No 30
>PF11160 DUF2945: Protein of unknown function (DUF2945); InterPro: IPR021331 This family of proteins has no known function.
Probab=20.51 E-value=59 Score=25.27 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.4
Q ss_pred eeeeeCCCCCceEEe
Q 017370 261 YYVATSPKDPTYVVA 275 (372)
Q Consensus 261 Yyva~spkDPtYvva 275 (372)
.=+.+||.||.|+|-
T Consensus 30 ~~v~AS~ddP~Y~I~ 44 (62)
T PF11160_consen 30 RTVNASKDDPRYEIE 44 (62)
T ss_pred EEecCCCCCCEEEEE
Confidence 347899999999984
Done!