Query 017370
Match_columns 372
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 13:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9j_A RNA-binding protein 16; 43.5 17 0.00059 29.6 3.2 43 243-306 83-125 (145)
2 2km4_A Regulator of TY1 transp 35.4 9.8 0.00033 30.7 0.5 44 243-306 78-121 (142)
3 3b09_A Peptidyl-prolyl CIS-tra 33.5 11 0.00037 29.1 0.5 30 103-143 32-61 (88)
4 4fjo_A DNA repair protein REV1 33.4 28 0.00094 27.1 2.8 87 275-369 2-92 (97)
5 4dnd_A Syntaxin-10, SYN10; str 32.8 5.6 0.00019 32.8 -1.3 42 257-300 15-56 (130)
6 3m3g_A EPL1 protein; fungal, p 29.0 32 0.0011 28.6 2.6 35 96-141 59-94 (120)
7 3ezq_A Tumor necrosis factor r 27.5 57 0.002 26.7 3.8 36 281-316 46-81 (115)
8 2kqa_A Cerato-platanin; elicit 25.4 38 0.0013 28.7 2.5 35 96-140 65-100 (129)
9 3oq9_A Tumor necrosis factor r 24.0 47 0.0016 25.7 2.6 36 280-315 37-72 (86)
10 4flb_A Regulation of nuclear P 23.6 72 0.0025 24.6 3.6 41 243-306 78-118 (132)
11 3vu7_H DNA repair protein REV1 23.2 51 0.0017 27.1 2.8 88 275-370 29-120 (124)
No 1
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=43.55 E-value=17 Score=29.56 Aligned_cols=43 Identities=19% Similarity=0.561 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhcceeeeeeCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017370 243 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 306 (372)
Q Consensus 243 PFAq~fAavltaaLTGslYyva~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkKIYSP 306 (372)
||+..|+.+|..++. .+| ..| ...|+.|+|++.-|.|| ++|+|
T Consensus 83 ~f~~~F~~~L~~~f~-~~~---~~~-------------~~~r~kl~rLl~iW~~r----~vF~~ 125 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQ-NLY---RCP-------------GDDKSKIVRVLNLWQKN----NVFKS 125 (145)
T ss_dssp SHHHHHHHHHHHHHH-HHT---SSC-------------GGGHHHHHHHHHHHHHT----TSSCH
T ss_pred cHHHHHHHHHHHHHH-HHH---hCC-------------HHHHHHHHHHHHHhcCC----CCCCH
Confidence 578889999998885 444 111 35589999999999986 46654
No 2
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=35.36 E-value=9.8 Score=30.67 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHhcceeeeeeCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017370 243 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 306 (372)
Q Consensus 243 PFAq~fAavltaaLTGslYyva~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkKIYSP 306 (372)
+|.++|+.+|..++.-. |- .. | ...++.+.+++..|.|| +||++
T Consensus 78 ~f~~~F~~~L~~~~~~~-~~-~~---~-----------~~~~~kv~rvl~iWeer----~vf~~ 121 (142)
T 2km4_A 78 QFQDSFGKVAAEVLGRI-NQ-EF---P-----------RDLKKKLSRVVNILKER----NIFSK 121 (142)
T ss_dssp HHHHHHHHTHHHHHHHH-HH-HS---C-----------HHHHHHHHHHHHHHHHH----TCSCH
T ss_pred HHHHHHHHHHHHHHHHH-HH-cC---C-----------HHHHHHHHHHHHHhhcc----CCcCH
Confidence 58888888888877543 21 11 2 23478899999999998 45654
No 3
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=33.49 E-value=11 Score=29.13 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=21.6
Q ss_pred EeehhhhHHHHhhhccceeeeeecccCCCCCCCHHHHHhcc
Q 017370 103 LSYGIGIYGAMALAGRFICSITGVDSMGGFHPSLDAIVEGL 143 (372)
Q Consensus 103 lsygigiYg~mA~aG~fIC~~tGiD~~GGF~~Sl~ai~~Gl 143 (372)
+||+||+--|--+... |++ ++.+|++++|+
T Consensus 32 ~SYaIG~~mG~~L~~~------g~~-----~lD~dav~~Gl 61 (88)
T 3b09_A 32 ASYGVGRQMGEQLAAN------SFE-----GIDIPAVQAGL 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS------CCT-----TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------Ccc-----ccCHHHHHHHH
Confidence 8999998766655443 222 27999999996
No 4
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=33.42 E-value=28 Score=27.08 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=49.0
Q ss_pred eecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHH--HHHHHhcceeeeeCcch-hhHHHhhhhhhhh-cccccchhch
Q 017370 275 APVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEG--LLALYLGFEWIQTNNIL-APIITHGIYSAVI-LGHGLWKIHD 350 (372)
Q Consensus 275 aPv~~s~~~r~dlkklf~aWyErRqmkKIYSPLlEg--lLalYLGfEWiqT~NIL-APiiTHgiYS~Vv-lGhGLwkihd 350 (372)
+|-+++.+...|+|.+.++|++... .|--+- +|+-||.= =++..|+= +..+-.-+|-.|= -||--| |.
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~-----~P~~~DV~~l~~yL~~-lv~~~~lek~~~vlk~l~rlv~~~~~~~W--~~ 73 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTIS-----DPMEEDILQVVRYCTD-LIEEKDLEKLDLVIKYMKRLMQQSVESVW--NM 73 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCS-----SCCHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHCSCHHH--HH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHH-HhhccCHHHHHHHHHHHHHHHhcccccHH--HH
Confidence 5889999999999999999998643 365443 34455532 23444420 1111111111110 144444 45
Q ss_pred hhHHHHHHHHHHhhccCCC
Q 017370 351 HRRRLHQRIQRLELEGNDS 369 (372)
Q Consensus 351 hr~rlRqRi~~i~~~~~ns 369 (372)
--+++...||....+.-++
T Consensus 74 A~~~I~~~VQ~~v~~~yG~ 92 (97)
T 4fjo_A 74 AFDFILDNVQVVLQQTYGS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5567777888776655443
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.82 E-value=5.6 Score=32.77 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=20.6
Q ss_pred hcceeeeeeCCCCCceEEeecccCccchHHHHHHHHHHHHHHhh
Q 017370 257 TGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQM 300 (372)
Q Consensus 257 TGslYyva~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqm 300 (372)
|--||+...+-+||-|+|.==++. .-+.++.+|..|.+-++.
T Consensus 15 ~~~~~~~~ms~~DPF~~Vk~EVq~--sl~~l~~l~~~w~~l~~~ 56 (130)
T 4dnd_A 15 TENLYFQSMSLEDPFFVVRGEVQK--AVNTARGLYQRWCELLQE 56 (130)
T ss_dssp ------------CCHHHHHHHHHH--HHHHHHHHHHHHHHC---
T ss_pred ccceeeecCCCCCCcHHHHHHHHH--HHHHHHHHHHHHHHhhcc
Confidence 456899999999999998644443 367788999999865544
No 6
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}
Probab=28.98 E-value=32 Score=28.63 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=27.0
Q ss_pred hccceEEEeehhhhHHHHhhhccceeeeeecccC-CCCCCCHHHHHh
Q 017370 96 KIGAIVRLSYGIGIYGAMALAGRFICSITGVDSM-GGFHPSLDAIVE 141 (372)
Q Consensus 96 kiGavvRlsygigiYg~mA~aG~fIC~~tGiD~~-GGF~~Sl~ai~~ 141 (372)
.-|.-++|+|. ||-| .++.||.. +||++|++|+-+
T Consensus 59 ~CGtC~~lty~----------g~si-~vlaID~a~~Gfnis~~A~n~ 94 (120)
T 3m3g_A 59 SCGTCWKLQYS----------GHTI-YVLAVDHAASGFNIALDAMNA 94 (120)
T ss_dssp TTTCEEEEEET----------TEEE-EEEEEEECSSSEEECHHHHHH
T ss_pred CCCceEEEEEC----------CeEE-EEEEEecCCCceeecHHHHHH
Confidence 35778999996 4664 68899954 589999999743
No 7
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=27.45 E-value=57 Score=26.70 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHh
Q 017370 281 RSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALYL 316 (372)
Q Consensus 281 ~~~r~dlkklf~aWyErRqmkKIYSPLlEglLalYL 316 (372)
+..+|...+++.+||++.-.+--|.-|+++|-..-|
T Consensus 46 ~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~l 81 (115)
T 3ezq_A 46 QDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANL 81 (115)
T ss_dssp SCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCcccHHHHHHHHHHHccc
Confidence 556788999999999999999999999999987654
No 8
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}
Probab=25.37 E-value=38 Score=28.69 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=28.6
Q ss_pred hccceEEEeehhhhHHHHhhhccceeeeeecccCC-CCCCCHHHHH
Q 017370 96 KIGAIVRLSYGIGIYGAMALAGRFICSITGVDSMG-GFHPSLDAIV 140 (372)
Q Consensus 96 kiGavvRlsygigiYg~mA~aG~fIC~~tGiD~~G-GF~~Sl~ai~ 140 (372)
.-|.-++|+|- .||-| .++.||..+ ||+++++|+-
T Consensus 65 ~CGtC~~lty~---------ng~sI-~vlaID~A~~gFnIs~~Amn 100 (129)
T 2kqa_A 65 SCGTCWKVTIP---------NGNSI-FIRGVDSGRGGFNVNPTAFT 100 (129)
T ss_dssp TCSCEEEEEET---------TTEEE-EEEEEEECSSSEEECHHHHH
T ss_pred CCCceEEEEEc---------CCCEE-EEEEEccCCCceeehHHHHH
Confidence 46788899995 27777 689999987 9999999864
No 9
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=24.03 E-value=47 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=30.0
Q ss_pred CccchHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHH
Q 017370 280 SRSGREDLKKLFAAWYERRQMKKIYSPLLEGLLALY 315 (372)
Q Consensus 280 s~~~r~dlkklf~aWyErRqmkKIYSPLlEglLalY 315 (372)
.++.+|...+++.+||++--.+--|.=|+++|-..-
T Consensus 37 ~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~ 72 (86)
T 3oq9_A 37 IQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKAE 72 (86)
T ss_dssp TTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHcc
Confidence 355678999999999999888888999999887643
No 10
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=23.60 E-value=72 Score=24.63 Aligned_cols=41 Identities=32% Similarity=0.643 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhcceeeeeeCCCCCceEEeecccCccchHHHHHHHHHHHHHHhhhHhhhH
Q 017370 243 PFAQAFAAVITAALTGSLYYVATSPKDPTYVVAPVLRSRSGREDLKKLFAAWYERRQMKKIYSP 306 (372)
Q Consensus 243 PFAq~fAavltaaLTGslYyva~spkDPtYvvaPv~~s~~~r~dlkklf~aWyErRqmkKIYSP 306 (372)
.|.+.|..++..++.-. +|| ..++.+.|++..|.|| +||+|
T Consensus 78 ~f~~~f~~~l~~~~~~~--------~~~-----------~~~~kl~~ll~iW~~r----~vf~~ 118 (132)
T 4flb_A 78 IFRESFADVLPEAAALV--------KDP-----------SVSKSVERIFKIWEDR----NVYPE 118 (132)
T ss_dssp HHHHHHHTTHHHHHHTT--------CST-----------TTHHHHHHHHHHHHHH----TSSCH
T ss_pred HHHHHHHHHHHHHHHHh--------CCH-----------HHHHHHHHHHHHhccC----CCcCH
Confidence 46666776666665321 122 4588999999999986 46765
No 11
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=23.16 E-value=51 Score=27.11 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred eecccCccchHHHHHHHHHHHHHHhhhHhhhHHHHH--HHHHHhcceeeeeCcch-hhHHHhhhhhhh-hcccccchhch
Q 017370 275 APVLRSRSGREDLKKLFAAWYERRQMKKIYSPLLEG--LLALYLGFEWIQTNNIL-APIITHGIYSAV-ILGHGLWKIHD 350 (372)
Q Consensus 275 aPv~~s~~~r~dlkklf~aWyErRqmkKIYSPLlEg--lLalYLGfEWiqT~NIL-APiiTHgiYS~V-vlGhGLwkihd 350 (372)
.|-+.+.+...|+|.++++|++... -|--+- +|+-||.= -++..|+= +..+-.-+|-.| =.|+.-| |.
T Consensus 29 ~P~f~g~t~l~evK~lL~~Wv~s~~-----~P~~~DV~~l~~yL~~-lVeek~Lek~~~vlk~l~rlv~~~~~~~W--~~ 100 (124)
T 3vu7_H 29 APNLAGAVEFNDVKTLLREWITTIS-----DPMEEDILQVVKYCTD-LIEEKDLEKLDLVIKYMKRLMQQSVESVW--NM 100 (124)
T ss_dssp -CCCSSSCSHHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHSCSTTHH--HH
T ss_pred CCccCCCcCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHHHHHhcccccHH--HH
Confidence 4668899999999999999998653 365443 34445432 23344420 111111111111 0255655 45
Q ss_pred hhHHHHHHHHHHhhccCCCC
Q 017370 351 HRRRLHQRIQRLELEGNDSD 370 (372)
Q Consensus 351 hr~rlRqRi~~i~~~~~ns~ 370 (372)
--+++...||....+.-+++
T Consensus 101 Ay~~I~~~VQ~~m~~~yG~~ 120 (124)
T 3vu7_H 101 AFDFILDNVQVVLQQTYGST 120 (124)
T ss_dssp HHHHHHHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 55677888888877766554
Done!