Query 017371
Match_columns 372
No_of_seqs 242 out of 2054
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 4.1E-49 8.8E-54 353.9 29.9 310 62-372 48-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 2E-28 4.4E-33 219.4 27.5 229 81-361 2-245 (246)
3 COG3386 Gluconolactonase [Carb 100.0 8.4E-27 1.8E-31 211.9 30.1 247 67-365 20-279 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 2.1E-19 4.6E-24 154.1 24.6 233 78-370 61-303 (353)
5 PLN02919 haloacid dehalogenase 99.8 1.7E-18 3.6E-23 182.2 32.4 244 77-372 566-888 (1057)
6 PF03088 Str_synth: Strictosid 99.8 1.5E-20 3.2E-25 137.5 8.0 88 164-251 1-89 (89)
7 COG4257 Vgb Streptogramin lyas 99.8 3.4E-16 7.4E-21 134.6 24.0 238 69-370 94-345 (353)
8 PLN02919 haloacid dehalogenase 99.7 2.5E-15 5.5E-20 158.3 25.8 188 78-284 623-878 (1057)
9 TIGR02604 Piru_Ver_Nterm putat 99.7 8.3E-14 1.8E-18 131.8 28.3 173 70-246 4-210 (367)
10 KOG4499 Ca2+-binding protein R 99.7 6.3E-14 1.4E-18 118.1 22.5 225 89-361 26-274 (310)
11 PF08450 SGL: SMP-30/Gluconola 99.6 9.5E-14 2.1E-18 124.3 18.7 175 80-283 41-245 (246)
12 PRK11028 6-phosphogluconolacto 99.5 2E-11 4.3E-16 114.2 29.6 246 69-371 27-303 (330)
13 PF10282 Lactonase: Lactonase, 99.5 4.9E-11 1.1E-15 112.1 28.3 252 66-372 26-322 (345)
14 PF10282 Lactonase: Lactonase, 99.5 8E-11 1.7E-15 110.7 26.5 198 66-284 75-312 (345)
15 COG2706 3-carboxymuconate cycl 99.4 8E-10 1.7E-14 99.1 25.9 189 79-284 89-310 (346)
16 PF07995 GSDH: Glucose / Sorbo 99.4 3.6E-11 7.7E-16 112.1 18.3 156 78-238 1-200 (331)
17 PRK11028 6-phosphogluconolacto 99.4 9.3E-10 2E-14 102.9 27.7 228 91-371 3-257 (330)
18 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 8.1E-09 1.8E-13 94.3 30.4 232 79-372 31-279 (300)
19 TIGR02604 Piru_Ver_Nterm putat 99.3 4.8E-10 1E-14 106.2 22.3 205 69-284 63-340 (367)
20 PF03022 MRJP: Major royal jel 99.3 9.2E-10 2E-14 100.2 21.4 188 122-363 5-256 (287)
21 COG2706 3-carboxymuconate cycl 99.3 2E-08 4.4E-13 90.2 29.1 241 78-372 39-321 (346)
22 TIGR03606 non_repeat_PQQ dehyd 99.2 2.6E-08 5.7E-13 95.1 30.0 176 69-247 21-260 (454)
23 COG3391 Uncharacterized conser 99.2 1.8E-08 3.8E-13 96.0 28.3 237 80-371 32-282 (381)
24 COG2133 Glucose/sorbosone dehy 99.2 1.6E-08 3.5E-13 94.4 25.3 171 69-243 58-263 (399)
25 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.1E-07 2.3E-12 86.9 29.0 165 90-282 1-175 (300)
26 COG3386 Gluconolactonase [Carb 99.2 3.9E-09 8.3E-14 96.5 19.0 145 77-240 109-277 (307)
27 COG3391 Uncharacterized conser 99.1 5.5E-08 1.2E-12 92.6 25.2 183 79-284 74-273 (381)
28 KOG4659 Uncharacterized conser 99.1 1.2E-08 2.6E-13 103.9 20.4 238 77-369 363-688 (1899)
29 KOG4659 Uncharacterized conser 99.1 6.2E-08 1.3E-12 98.9 25.3 193 83-309 411-695 (1899)
30 COG3292 Predicted periplasmic 99.1 3.8E-09 8.2E-14 99.9 15.6 141 80-247 166-315 (671)
31 TIGR02658 TTQ_MADH_Hv methylam 99.0 6.4E-07 1.4E-11 83.2 26.6 246 90-371 13-329 (352)
32 PF02239 Cytochrom_D1: Cytochr 98.9 3.7E-07 8.1E-12 86.3 21.9 162 70-250 29-203 (369)
33 PF06977 SdiA-regulated: SdiA- 98.8 9E-07 1.9E-11 78.4 20.0 191 76-284 19-241 (248)
34 COG3292 Predicted periplasmic 98.8 4E-08 8.8E-13 93.1 11.3 96 161-284 165-266 (671)
35 KOG1214 Nidogen and related ba 98.8 6.9E-07 1.5E-11 87.9 18.7 217 91-371 992-1225(1289)
36 TIGR03300 assembly_YfgL outer 98.7 4E-05 8.6E-10 73.1 30.2 218 83-371 60-296 (377)
37 cd00200 WD40 WD40 domain, foun 98.7 2.1E-05 4.6E-10 70.0 26.6 222 82-369 55-288 (289)
38 KOG1520 Predicted alkaloid syn 98.7 1.8E-06 3.9E-11 79.1 17.9 168 70-284 45-238 (376)
39 TIGR03606 non_repeat_PQQ dehyd 98.7 8E-06 1.7E-10 78.3 22.2 167 109-286 22-251 (454)
40 PF05096 Glu_cyclase_2: Glutam 98.6 7.1E-06 1.5E-10 72.4 18.7 113 117-249 130-261 (264)
41 PF02239 Cytochrom_D1: Cytochr 98.6 7E-05 1.5E-09 70.9 26.7 168 91-283 7-190 (369)
42 cd00200 WD40 WD40 domain, foun 98.6 0.00016 3.4E-09 64.3 27.9 177 80-283 11-197 (289)
43 PF06977 SdiA-regulated: SdiA- 98.6 1.7E-05 3.6E-10 70.4 20.7 195 118-369 23-247 (248)
44 PRK04922 tolB translocation pr 98.5 8.1E-05 1.8E-09 72.4 25.5 201 83-340 208-423 (433)
45 PF03022 MRJP: Major royal jel 98.5 1.2E-05 2.6E-10 73.4 18.1 184 82-284 4-255 (287)
46 KOG1214 Nidogen and related ba 98.5 4.4E-06 9.6E-11 82.4 15.9 177 81-284 1027-1216(1289)
47 PRK04792 tolB translocation pr 98.5 0.00011 2.3E-09 71.7 25.9 200 83-340 222-437 (448)
48 TIGR03032 conserved hypothetic 98.5 5.8E-05 1.3E-09 67.8 21.1 191 77-286 47-263 (335)
49 PF01731 Arylesterase: Arylest 98.5 1.4E-06 2.9E-11 63.6 8.8 82 164-249 1-84 (86)
50 KOG0291 WD40-repeat-containing 98.5 0.00017 3.8E-09 70.9 25.5 185 76-285 348-542 (893)
51 PRK05137 tolB translocation pr 98.5 0.00026 5.5E-09 68.9 27.5 155 100-279 183-348 (435)
52 PRK11138 outer membrane biogen 98.4 8.6E-05 1.9E-09 71.2 23.3 216 89-371 120-352 (394)
53 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00017 3.6E-09 67.3 24.1 177 80-284 106-320 (352)
54 PRK11138 outer membrane biogen 98.4 0.00016 3.6E-09 69.3 25.1 213 89-370 160-392 (394)
55 PRK03629 tolB translocation pr 98.4 0.00017 3.7E-09 69.9 25.2 176 82-283 202-392 (429)
56 PRK02889 tolB translocation pr 98.4 0.00031 6.6E-09 68.2 26.6 202 83-341 200-416 (427)
57 PF13360 PQQ_2: PQQ-like domai 98.4 0.00026 5.7E-09 62.5 24.0 170 85-282 32-219 (238)
58 TIGR03300 assembly_YfgL outer 98.4 0.0002 4.3E-09 68.2 24.6 122 197-365 249-373 (377)
59 PRK00178 tolB translocation pr 98.4 0.00042 9.1E-09 67.3 26.0 202 82-340 202-418 (430)
60 PRK04792 tolB translocation pr 98.3 0.001 2.2E-08 64.9 27.1 134 122-279 222-364 (448)
61 PRK03629 tolB translocation pr 98.3 0.0012 2.6E-08 64.1 27.5 156 100-280 180-346 (429)
62 PF13360 PQQ_2: PQQ-like domai 98.3 0.00076 1.6E-08 59.5 24.2 183 124-372 32-230 (238)
63 PRK04043 tolB translocation pr 98.3 0.001 2.2E-08 64.2 26.4 198 84-341 193-413 (419)
64 PRK05137 tolB translocation pr 98.3 0.0007 1.5E-08 65.9 25.5 171 82-278 205-390 (435)
65 TIGR02800 propeller_TolB tol-p 98.3 0.0011 2.3E-08 64.0 26.1 173 84-282 195-383 (417)
66 PRK02889 tolB translocation pr 98.2 0.0015 3.3E-08 63.4 27.0 154 100-278 177-341 (427)
67 KOG4499 Ca2+-binding protein R 98.2 7.1E-05 1.5E-09 64.0 14.6 111 85-213 115-247 (310)
68 PRK01742 tolB translocation pr 98.2 0.00099 2.1E-08 64.7 24.9 173 81-284 206-391 (429)
69 KOG2106 Uncharacterized conser 98.2 0.0008 1.7E-08 63.5 22.5 175 81-284 249-427 (626)
70 COG3204 Uncharacterized protei 98.2 0.0011 2.3E-08 59.0 21.6 191 76-284 83-303 (316)
71 KOG0318 WD40 repeat stress pro 98.2 0.0019 4.1E-08 61.3 24.4 183 75-284 317-507 (603)
72 PF07995 GSDH: Glucose / Sorbo 98.2 5.4E-05 1.2E-09 70.7 14.6 157 117-285 2-202 (331)
73 PRK04922 tolB translocation pr 98.1 0.0018 4E-08 62.9 25.0 134 122-279 208-350 (433)
74 PF05096 Glu_cyclase_2: Glutam 98.1 0.0008 1.7E-08 59.6 20.1 155 160-371 44-202 (264)
75 PRK04043 tolB translocation pr 98.1 0.0038 8.3E-08 60.2 26.7 155 100-282 170-336 (419)
76 TIGR02800 propeller_TolB tol-p 98.1 0.0045 9.7E-08 59.7 26.8 159 100-283 171-340 (417)
77 PRK00178 tolB translocation pr 98.0 0.0085 1.8E-07 58.2 27.3 153 101-278 181-344 (430)
78 cd00216 PQQ_DH Dehydrogenases 98.0 0.0074 1.6E-07 59.6 26.8 253 89-370 110-422 (488)
79 KOG1446 Histone H3 (Lys4) meth 98.0 0.0035 7.6E-08 55.9 21.2 157 72-251 94-264 (311)
80 KOG0279 G protein beta subunit 98.0 0.01 2.2E-07 52.3 24.5 217 91-372 30-262 (315)
81 COG1520 FOG: WD40-like repeat 98.0 0.0029 6.3E-08 60.1 22.4 222 85-364 64-307 (370)
82 PF07433 DUF1513: Protein of u 98.0 0.0036 7.9E-08 56.7 21.2 154 84-250 56-248 (305)
83 cd00216 PQQ_DH Dehydrogenases 98.0 0.0053 1.1E-07 60.6 24.6 117 89-215 61-191 (488)
84 PRK02888 nitrous-oxide reducta 98.0 0.0015 3.2E-08 64.6 20.1 87 198-284 295-394 (635)
85 PRK01029 tolB translocation pr 97.9 0.015 3.2E-07 56.4 26.6 170 85-278 191-384 (428)
86 KOG1446 Histone H3 (Lys4) meth 97.9 0.015 3.2E-07 52.0 27.1 232 79-371 15-261 (311)
87 TIGR03118 PEPCTERM_chp_1 conse 97.9 0.0049 1.1E-07 55.2 20.7 126 222-371 141-278 (336)
88 KOG1274 WD40 repeat protein [G 97.9 0.0068 1.5E-07 61.2 23.6 148 80-251 15-170 (933)
89 KOG0289 mRNA splicing factor [ 97.9 0.0067 1.5E-07 56.4 21.7 190 119-369 305-502 (506)
90 KOG0266 WD40 repeat-containing 97.9 0.012 2.5E-07 57.7 25.3 179 81-284 162-354 (456)
91 KOG0294 WD40 repeat-containing 97.9 0.0096 2.1E-07 53.3 21.5 172 82-284 47-228 (362)
92 COG3204 Uncharacterized protei 97.9 0.0048 1E-07 55.0 19.6 183 122-363 90-304 (316)
93 TIGR03032 conserved hypothetic 97.8 0.0081 1.8E-07 54.3 20.9 204 91-360 19-259 (335)
94 KOG0266 WD40 repeat-containing 97.8 0.013 2.8E-07 57.4 24.3 151 76-250 201-365 (456)
95 KOG0286 G-protein beta subunit 97.8 0.023 5E-07 50.4 26.7 239 72-370 49-301 (343)
96 COG2133 Glucose/sorbosone dehy 97.8 0.0034 7.4E-08 59.2 18.5 66 219-284 314-386 (399)
97 KOG0315 G-protein beta subunit 97.8 0.0035 7.6E-08 54.3 16.9 206 97-334 18-232 (311)
98 KOG0291 WD40-repeat-containing 97.7 0.006 1.3E-07 60.5 20.0 181 80-284 394-602 (893)
99 PRK13684 Ycf48-like protein; P 97.7 0.041 8.9E-07 51.5 26.6 178 80-284 47-234 (334)
100 COG3823 Glutamine cyclotransfe 97.7 0.011 2.3E-07 50.1 18.4 49 198-246 195-256 (262)
101 KOG2139 WD40 repeat protein [G 97.7 0.022 4.7E-07 52.0 21.4 152 112-286 190-367 (445)
102 PRK01742 tolB translocation pr 97.7 0.029 6.2E-07 54.5 24.1 152 100-279 185-347 (429)
103 KOG0318 WD40 repeat stress pro 97.7 0.047 1E-06 52.2 24.0 182 81-284 193-426 (603)
104 KOG2055 WD40 repeat protein [G 97.7 0.011 2.5E-07 55.3 19.6 230 84-371 263-511 (514)
105 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.027 5.9E-07 56.1 23.3 112 89-215 69-197 (527)
106 KOG0282 mRNA splicing factor [ 97.6 0.0032 7E-08 59.1 15.0 181 80-284 260-452 (503)
107 KOG1273 WD40 repeat protein [G 97.6 0.041 8.9E-07 49.4 21.1 201 81-284 26-269 (405)
108 PF13449 Phytase-like: Esteras 97.6 0.024 5.2E-07 52.9 21.0 168 79-250 20-252 (326)
109 KOG0315 G-protein beta subunit 97.5 0.051 1.1E-06 47.3 21.9 176 83-284 45-235 (311)
110 KOG0286 G-protein beta subunit 97.5 0.031 6.7E-07 49.6 19.2 167 86-279 153-330 (343)
111 KOG1274 WD40 repeat protein [G 97.5 0.012 2.5E-07 59.7 18.4 167 91-282 68-250 (933)
112 PF03088 Str_synth: Strictosid 97.5 0.00075 1.6E-08 49.6 7.7 61 83-144 2-85 (89)
113 PF05787 DUF839: Bacterial pro 97.5 0.0026 5.6E-08 62.9 13.9 78 158-236 433-519 (524)
114 COG4946 Uncharacterized protei 97.5 0.0043 9.3E-08 58.4 14.4 136 84-238 367-508 (668)
115 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.051 1.1E-06 47.7 19.9 59 89-147 105-167 (354)
116 PTZ00421 coronin; Provisional 97.5 0.13 2.9E-06 50.6 27.4 147 80-249 77-245 (493)
117 PF14583 Pectate_lyase22: Olig 97.4 0.051 1.1E-06 50.9 21.1 162 87-251 44-226 (386)
118 PF01436 NHL: NHL repeat; Int 97.4 0.00026 5.7E-09 40.0 3.8 28 218-246 1-28 (28)
119 KOG2055 WD40 repeat protein [G 97.4 0.02 4.4E-07 53.7 17.7 182 81-284 216-406 (514)
120 PRK01029 tolB translocation pr 97.4 0.16 3.4E-06 49.4 28.0 156 100-278 166-340 (428)
121 PF14870 PSII_BNR: Photosynthe 97.4 0.11 2.4E-06 47.6 22.7 177 80-284 18-206 (302)
122 KOG2106 Uncharacterized conser 97.4 0.034 7.3E-07 52.9 18.9 145 79-249 330-477 (626)
123 PF05787 DUF839: Bacterial pro 97.3 0.014 3E-07 57.8 17.2 125 157-282 346-520 (524)
124 PF07433 DUF1513: Protein of u 97.3 0.12 2.6E-06 47.0 22.7 106 117-238 5-118 (305)
125 KOG0278 Serine/threonine kinas 97.3 0.03 6.5E-07 48.7 16.5 133 89-244 155-292 (334)
126 PRK13684 Ycf48-like protein; P 97.3 0.14 2.9E-06 48.0 22.8 175 83-284 94-279 (334)
127 COG3490 Uncharacterized protei 97.3 0.095 2E-06 46.7 19.5 251 86-366 43-343 (366)
128 COG4946 Uncharacterized protei 97.3 0.19 4.1E-06 47.8 23.1 79 200-283 383-461 (668)
129 PLN00181 protein SPA1-RELATED; 97.2 0.41 8.9E-06 50.4 29.5 176 82-284 536-728 (793)
130 PF08662 eIF2A: Eukaryotic tra 97.1 0.041 8.9E-07 47.2 16.2 139 88-251 30-181 (194)
131 PF01436 NHL: NHL repeat; Int 97.1 0.0007 1.5E-08 38.2 3.5 26 79-104 2-28 (28)
132 PF14269 Arylsulfotran_2: Aryl 97.1 0.21 4.5E-06 45.9 22.5 123 162-336 145-297 (299)
133 COG1520 FOG: WD40-like repeat 97.1 0.26 5.6E-06 46.8 24.1 108 89-214 111-224 (370)
134 KOG0272 U4/U6 small nuclear ri 97.1 0.059 1.3E-06 50.2 17.4 183 76-283 215-406 (459)
135 COG3211 PhoX Predicted phospha 97.1 0.048 1E-06 53.0 16.9 126 157-284 413-574 (616)
136 smart00135 LY Low-density lipo 97.0 0.0031 6.6E-08 39.3 6.2 38 214-251 4-41 (43)
137 KOG0772 Uncharacterized conser 97.0 0.12 2.7E-06 49.4 18.9 197 80-296 169-397 (641)
138 PLN00181 protein SPA1-RELATED; 97.0 0.61 1.3E-05 49.2 29.8 146 81-250 486-649 (793)
139 KOG0316 Conserved WD40 repeat- 97.0 0.17 3.6E-06 43.9 17.9 172 83-283 22-202 (307)
140 KOG0263 Transcription initiati 96.9 0.097 2.1E-06 52.3 18.3 192 119-371 454-648 (707)
141 PTZ00421 coronin; Provisional 96.9 0.51 1.1E-05 46.6 27.7 112 118-250 77-199 (493)
142 KOG0278 Serine/threonine kinas 96.9 0.037 8E-07 48.1 13.3 131 127-284 154-287 (334)
143 PF13449 Phytase-like: Esteras 96.9 0.069 1.5E-06 49.8 16.1 111 162-284 86-234 (326)
144 PTZ00420 coronin; Provisional 96.8 0.62 1.4E-05 46.7 26.6 147 79-249 75-248 (568)
145 PF02333 Phytase: Phytase; In 96.8 0.41 8.8E-06 45.2 20.8 147 84-250 59-238 (381)
146 PRK02888 nitrous-oxide reducta 96.7 0.5 1.1E-05 47.2 21.3 22 263-284 319-340 (635)
147 KOG0271 Notchless-like WD40 re 96.7 0.1 2.2E-06 48.2 15.2 188 70-284 239-471 (480)
148 KOG0279 G protein beta subunit 96.7 0.41 8.9E-06 42.5 22.9 179 80-284 65-252 (315)
149 PLN00033 photosystem II stabil 96.7 0.48 1E-05 45.3 20.5 137 122-284 243-390 (398)
150 PTZ00420 coronin; Provisional 96.7 0.39 8.4E-06 48.1 20.6 156 80-251 127-295 (568)
151 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.49 1.1E-05 42.8 21.6 58 76-134 20-93 (336)
152 PRK13616 lipoprotein LpqB; Pro 96.6 0.84 1.8E-05 46.1 22.8 220 91-363 322-560 (591)
153 KOG0285 Pleiotropic regulator 96.6 0.46 1E-05 43.6 18.6 185 72-284 145-339 (460)
154 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.9 2E-05 45.3 28.4 127 84-216 116-288 (527)
155 PF14517 Tachylectin: Tachylec 96.6 0.1 2.2E-06 45.4 13.9 161 66-249 22-206 (229)
156 PF06433 Me-amine-dh_H: Methyl 96.6 0.12 2.6E-06 47.6 15.0 98 172-284 3-115 (342)
157 KOG0293 WD40 repeat-containing 96.5 0.18 3.8E-06 47.1 15.7 147 114-284 222-375 (519)
158 PF08662 eIF2A: Eukaryotic tra 96.5 0.34 7.3E-06 41.5 17.0 129 127-284 30-163 (194)
159 KOG0640 mRNA cleavage stimulat 96.5 0.039 8.5E-07 49.4 10.8 100 162-284 174-281 (430)
160 PF14583 Pectate_lyase22: Olig 96.5 0.17 3.6E-06 47.6 15.4 156 197-368 58-230 (386)
161 KOG0268 Sof1-like rRNA process 96.5 0.06 1.3E-06 49.2 12.0 84 197-283 208-291 (433)
162 KOG0292 Vesicle coat complex C 96.4 1.1 2.3E-05 46.2 21.5 127 76-237 248-384 (1202)
163 PRK13616 lipoprotein LpqB; Pro 96.4 1 2.2E-05 45.6 21.8 181 79-284 350-559 (591)
164 KOG0282 mRNA splicing factor [ 96.4 0.047 1E-06 51.6 11.3 150 80-251 301-464 (503)
165 KOG0289 mRNA splicing factor [ 96.3 0.099 2.2E-06 48.9 13.0 142 81-246 350-502 (506)
166 KOG0296 Angio-associated migra 96.3 0.85 1.8E-05 42.0 21.3 145 83-250 69-221 (399)
167 KOG0268 Sof1-like rRNA process 96.3 0.2 4.3E-06 46.0 14.5 179 75-284 63-249 (433)
168 COG3211 PhoX Predicted phospha 96.3 0.046 1E-06 53.1 11.1 73 159-237 498-572 (616)
169 KOG0275 Conserved WD40 repeat- 96.3 0.22 4.8E-06 44.9 14.5 152 75-249 210-378 (508)
170 KOG2048 WD40 repeat protein [G 96.2 0.45 9.7E-06 47.1 17.4 151 83-251 387-550 (691)
171 KOG2096 WD40 repeat protein [G 96.2 0.89 1.9E-05 41.2 22.9 144 79-240 87-250 (420)
172 PLN00033 photosystem II stabil 96.2 1.2 2.6E-05 42.7 23.5 128 198-364 258-392 (398)
173 PF14517 Tachylectin: Tachylec 96.2 0.016 3.5E-07 50.3 7.0 123 64-208 66-207 (229)
174 KOG0263 Transcription initiati 96.2 0.46 9.9E-06 47.7 17.6 185 84-294 457-650 (707)
175 KOG1539 WD repeat protein [Gen 96.2 0.18 4E-06 50.9 14.8 180 80-284 450-637 (910)
176 KOG0283 WD40 repeat-containing 96.2 0.35 7.6E-06 48.7 16.8 146 122-291 374-530 (712)
177 PF05694 SBP56: 56kDa selenium 96.1 0.7 1.5E-05 44.1 17.3 192 89-284 87-332 (461)
178 KOG2139 WD40 repeat protein [G 96.1 0.7 1.5E-05 42.6 16.6 104 161-284 196-301 (445)
179 KOG0772 Uncharacterized conser 96.0 0.27 5.8E-06 47.2 14.3 142 122-282 172-335 (641)
180 KOG0646 WD40 repeat protein [G 96.0 0.72 1.5E-05 43.7 16.7 148 82-250 85-248 (476)
181 KOG0293 WD40 repeat-containing 96.0 0.56 1.2E-05 43.9 15.8 149 81-251 272-427 (519)
182 PF06433 Me-amine-dh_H: Methyl 95.9 0.89 1.9E-05 42.1 17.1 139 90-249 3-165 (342)
183 PF02333 Phytase: Phytase; In 95.9 1.4 3.1E-05 41.6 18.8 135 200-371 130-289 (381)
184 COG0823 TolB Periplasmic compo 95.8 1.1 2.4E-05 43.4 18.3 107 122-249 242-358 (425)
185 KOG0319 WD40-repeat-containing 95.8 1.6 3.5E-05 43.8 19.2 176 84-282 25-210 (775)
186 PHA02713 hypothetical protein; 95.8 1.8 4E-05 43.5 20.4 118 100-237 273-405 (557)
187 KOG0639 Transducin-like enhanc 95.7 0.54 1.2E-05 45.1 14.8 110 161-295 466-583 (705)
188 KOG0292 Vesicle coat complex C 95.7 3.1 6.7E-05 43.0 20.7 147 79-251 10-167 (1202)
189 KOG2048 WD40 repeat protein [G 95.6 2.7 5.8E-05 41.8 23.9 180 79-284 70-266 (691)
190 COG3823 Glutamine cyclotransfe 95.5 0.89 1.9E-05 38.9 14.1 149 161-371 46-203 (262)
191 KOG4649 PQQ (pyrrolo-quinoline 95.5 1.7 3.7E-05 38.5 20.6 144 81-250 15-166 (354)
192 KOG0973 Histone transcription 95.4 3.4 7.3E-05 43.2 20.6 138 80-240 71-241 (942)
193 KOG0646 WD40 repeat protein [G 95.4 1.3 2.8E-05 42.0 16.1 207 118-371 82-306 (476)
194 KOG0275 Conserved WD40 repeat- 95.3 0.37 7.9E-06 43.6 11.8 107 122-251 311-425 (508)
195 PF14870 PSII_BNR: Photosynthe 95.3 2.3 5E-05 39.1 22.2 171 84-284 67-252 (302)
196 KOG0283 WD40 repeat-containing 95.3 0.55 1.2E-05 47.4 14.3 150 81-250 412-577 (712)
197 KOG0272 U4/U6 small nuclear ri 95.2 0.53 1.1E-05 44.1 12.9 139 122-284 308-450 (459)
198 KOG0288 WD40 repeat protein Ti 95.2 1.1 2.4E-05 41.9 14.7 123 97-238 320-451 (459)
199 KOG0296 Angio-associated migra 95.1 2.7 5.8E-05 38.8 21.4 225 82-370 152-396 (399)
200 PF05935 Arylsulfotrans: Aryls 95.1 1.4 3E-05 43.5 16.5 153 91-250 115-302 (477)
201 KOG2110 Uncharacterized conser 95.1 1.2 2.6E-05 41.1 14.5 134 200-372 107-248 (391)
202 KOG0771 Prolactin regulatory e 95.1 0.63 1.4E-05 43.4 12.9 178 83-281 149-341 (398)
203 COG3490 Uncharacterized protei 95.0 2 4.3E-05 38.6 15.4 117 225-361 120-244 (366)
204 KOG1273 WD40 repeat protein [G 95.0 1.2 2.6E-05 40.4 13.9 70 163-250 26-96 (405)
205 KOG0265 U5 snRNP-specific prot 95.0 2.3 5E-05 38.3 15.5 144 82-248 51-203 (338)
206 PF00930 DPPIV_N: Dipeptidyl p 94.9 2.5 5.5E-05 39.8 17.3 83 197-284 258-347 (353)
207 KOG0306 WD40-repeat-containing 94.9 4.4 9.5E-05 41.1 18.8 181 78-287 373-573 (888)
208 KOG0284 Polyadenylation factor 94.7 0.82 1.8E-05 42.7 12.5 172 84-282 102-282 (464)
209 PHA02713 hypothetical protein; 94.7 2.2 4.7E-05 43.0 17.0 155 89-250 303-489 (557)
210 KOG2919 Guanine nucleotide-bin 94.6 3.2 7E-05 37.8 15.7 144 87-249 120-281 (406)
211 KOG0303 Actin-binding protein 94.6 1.4 3E-05 41.1 13.7 162 97-278 152-323 (472)
212 KOG1407 WD40 repeat protein [F 94.6 3.1 6.8E-05 36.8 19.8 217 76-334 18-248 (313)
213 KOG0639 Transducin-like enhanc 94.5 1.1 2.4E-05 43.0 13.4 132 122-284 514-653 (705)
214 KOG0273 Beta-transducin family 94.4 4.8 0.0001 38.5 23.0 97 233-371 424-522 (524)
215 KOG0319 WD40-repeat-containing 94.4 6.4 0.00014 39.7 19.0 92 84-177 111-209 (775)
216 KOG0640 mRNA cleavage stimulat 94.3 1.6 3.6E-05 39.4 13.1 118 216-370 170-289 (430)
217 KOG0650 WD40 repeat nucleolar 94.2 6.3 0.00014 38.9 17.8 203 69-294 391-638 (733)
218 PF00058 Ldl_recept_b: Low-den 94.1 0.22 4.8E-06 30.9 5.4 40 232-274 2-42 (42)
219 PF02897 Peptidase_S9_N: Proly 94.0 6 0.00013 38.0 20.8 84 197-282 148-244 (414)
220 PF08553 VID27: VID27 cytoplas 93.9 1.1 2.5E-05 46.3 13.1 152 76-247 478-645 (794)
221 KOG4328 WD40 protein [Function 93.9 6.2 0.00013 37.6 18.0 85 221-340 372-463 (498)
222 KOG1407 WD40 repeat protein [F 93.8 4.5 9.7E-05 35.9 17.2 138 162-333 66-205 (313)
223 PF02897 Peptidase_S9_N: Proly 93.8 6.7 0.00015 37.7 20.9 151 122-284 128-296 (414)
224 PF05694 SBP56: 56kDa selenium 93.8 2.6 5.5E-05 40.4 14.1 64 221-284 314-394 (461)
225 TIGR03074 PQQ_membr_DH membran 93.8 10 0.00022 39.7 27.8 117 89-216 194-353 (764)
226 PF07494 Reg_prop: Two compone 93.7 0.068 1.5E-06 28.8 2.3 17 267-283 7-23 (24)
227 PF10647 Gmad1: Lipoprotein Lp 93.7 5 0.00011 35.9 19.6 154 80-251 25-199 (253)
228 KOG1539 WD repeat protein [Gen 93.7 9.6 0.00021 39.2 20.2 141 117-281 449-593 (910)
229 PF05935 Arylsulfotrans: Aryls 93.7 2.4 5.3E-05 41.7 14.7 114 84-216 153-310 (477)
230 KOG0641 WD40 repeat protein [G 93.6 4.3 9.4E-05 35.1 22.1 184 79-284 33-251 (350)
231 COG0823 TolB Periplasmic compo 93.3 2.8 6E-05 40.6 14.1 75 199-277 218-294 (425)
232 KOG4441 Proteins containing BT 93.2 5.1 0.00011 40.5 16.3 145 89-251 332-501 (571)
233 KOG0271 Notchless-like WD40 re 93.2 7.4 0.00016 36.4 17.4 27 79-105 158-185 (480)
234 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.52 1.1E-05 28.8 6.0 31 197-227 12-42 (42)
235 KOG0310 Conserved WD40 repeat- 93.1 8.6 0.00019 36.9 19.7 219 81-363 71-301 (487)
236 PF10647 Gmad1: Lipoprotein Lp 93.0 6.4 0.00014 35.2 21.9 144 118-284 25-185 (253)
237 KOG2919 Guanine nucleotide-bin 92.8 2.7 5.9E-05 38.3 12.0 134 198-371 132-280 (406)
238 KOG1538 Uncharacterized conser 92.7 2.7 5.9E-05 42.0 12.9 53 122-179 17-72 (1081)
239 PF07494 Reg_prop: Two compone 92.7 0.17 3.6E-06 27.2 2.8 19 343-361 4-23 (24)
240 KOG4378 Nuclear protein COP1 [ 92.7 10 0.00022 36.7 16.3 83 197-284 185-270 (673)
241 KOG0299 U3 snoRNP-associated p 92.6 9.7 0.00021 36.3 18.5 141 82-248 206-355 (479)
242 PF00058 Ldl_recept_b: Low-den 92.6 0.66 1.4E-05 28.7 5.8 40 172-228 1-42 (42)
243 TIGR03074 PQQ_membr_DH membran 92.4 16 0.00035 38.2 18.9 123 90-216 261-431 (764)
244 KOG3881 Uncharacterized conser 91.9 7.2 0.00016 36.5 13.8 92 191-286 218-312 (412)
245 TIGR02276 beta_rpt_yvtn 40-res 91.4 0.76 1.6E-05 28.0 5.3 42 228-273 1-42 (42)
246 PF01731 Arylesterase: Arylest 91.4 0.66 1.4E-05 33.9 5.6 47 97-144 34-82 (86)
247 KOG0310 Conserved WD40 repeat- 91.3 14 0.0003 35.6 15.4 140 79-240 154-301 (487)
248 COG5276 Uncharacterized conser 91.0 12 0.00026 34.0 20.8 170 88-285 95-277 (370)
249 KOG0643 Translation initiation 90.9 11 0.00025 33.5 21.8 179 84-284 16-210 (327)
250 KOG1036 Mitotic spindle checkp 90.5 13 0.00029 33.7 21.8 143 82-250 17-164 (323)
251 KOG0973 Histone transcription 90.5 26 0.00056 37.0 17.7 102 162-284 131-239 (942)
252 PF14269 Arylsulfotran_2: Aryl 90.3 10 0.00022 34.9 13.6 121 122-250 148-290 (299)
253 KOG0285 Pleiotropic regulator 90.2 15 0.00034 34.1 17.8 148 76-249 191-348 (460)
254 PHA02790 Kelch-like protein; P 90.2 9.6 0.00021 37.6 14.4 120 89-237 318-453 (480)
255 KOG4441 Proteins containing BT 90.2 23 0.00049 35.9 17.8 134 101-251 303-454 (571)
256 KOG0650 WD40 repeat nucleolar 90.2 18 0.00038 36.0 15.3 69 213-284 516-587 (733)
257 KOG4547 WD40 repeat-containing 90.1 17 0.00037 35.7 15.2 111 92-227 73-193 (541)
258 KOG0273 Beta-transducin family 90.1 18 0.0004 34.7 23.5 140 80-244 237-384 (524)
259 COG5276 Uncharacterized conser 89.9 15 0.00032 33.4 18.5 100 128-252 96-202 (370)
260 KOG1538 Uncharacterized conser 89.9 24 0.00051 35.7 20.6 56 80-136 14-72 (1081)
261 COG4247 Phy 3-phytase (myo-ino 88.8 16 0.00036 32.4 12.9 51 92-144 171-232 (364)
262 KOG2321 WD40 repeat protein [G 88.7 22 0.00047 35.2 14.6 114 84-216 139-267 (703)
263 KOG0313 Microtubule binding pr 88.6 21 0.00046 33.4 14.5 153 76-251 191-378 (423)
264 KOG2315 Predicted translation 88.4 24 0.00052 34.6 14.8 116 100-239 252-375 (566)
265 KOG2321 WD40 repeat protein [G 88.2 3.8 8.3E-05 40.2 9.3 145 84-249 181-343 (703)
266 KOG4378 Nuclear protein COP1 [ 88.1 17 0.00037 35.3 13.4 72 163-252 211-283 (673)
267 KOG1408 WD40 repeat protein [F 88.0 19 0.00041 36.6 14.1 58 223-284 601-660 (1080)
268 KOG0316 Conserved WD40 repeat- 87.8 18 0.0004 31.7 17.2 127 197-369 79-210 (307)
269 KOG0281 Beta-TrCP (transducin 87.5 3.2 6.9E-05 38.2 7.9 52 197-250 338-389 (499)
270 PF08553 VID27: VID27 cytoplas 87.2 1.4 3E-05 45.7 6.2 64 81-144 580-645 (794)
271 KOG2110 Uncharacterized conser 87.1 11 0.00023 35.1 11.1 79 97-179 151-237 (391)
272 PHA03098 kelch-like protein; P 86.8 36 0.00077 34.0 18.6 145 89-251 294-466 (534)
273 KOG1963 WD40 repeat protein [G 86.7 30 0.00065 35.7 15.0 144 83-250 210-376 (792)
274 KOG1272 WD40-repeat-containing 86.6 17 0.00037 34.9 12.4 30 79-108 130-162 (545)
275 KOG0299 U3 snoRNP-associated p 86.5 31 0.00068 33.1 15.6 129 122-274 147-294 (479)
276 KOG0641 WD40 repeat protein [G 86.4 21 0.00046 31.0 14.0 22 223-245 94-115 (350)
277 PRK10115 protease 2; Provision 86.4 44 0.00096 34.7 18.3 53 197-251 151-209 (686)
278 PF06739 SBBP: Beta-propeller 86.3 0.61 1.3E-05 28.2 2.0 19 266-284 14-32 (38)
279 KOG1215 Low-density lipoprotei 86.1 35 0.00076 36.5 16.4 177 80-280 438-626 (877)
280 PHA02790 Kelch-like protein; P 86.0 37 0.00081 33.5 17.8 50 199-250 331-385 (480)
281 PHA03098 kelch-like protein; P 85.9 24 0.00051 35.3 14.3 145 89-250 342-512 (534)
282 KOG1445 Tumor-specific antigen 85.8 17 0.00036 36.5 12.2 130 84-238 633-784 (1012)
283 KOG1517 Guanine nucleotide bin 85.7 56 0.0012 35.1 19.6 199 118-370 1165-1379(1387)
284 PF09826 Beta_propel: Beta pro 85.5 35 0.00077 34.1 15.0 103 242-372 249-355 (521)
285 smart00135 LY Low-density lipo 85.4 2.6 5.6E-05 25.5 4.7 31 77-107 7-40 (43)
286 KOG0306 WD40-repeat-containing 85.3 48 0.001 34.1 18.4 175 81-282 68-262 (888)
287 KOG0308 Conserved WD40 repeat- 85.0 45 0.00098 33.6 15.2 167 88-284 35-233 (735)
288 KOG0771 Prolactin regulatory e 84.5 37 0.0008 32.1 14.1 55 122-179 149-205 (398)
289 PRK14131 N-acetylneuraminic ac 84.4 38 0.00082 32.1 15.9 38 199-237 189-228 (376)
290 PF14339 DUF4394: Domain of un 84.2 29 0.00062 30.6 12.1 111 118-247 28-161 (236)
291 KOG0307 Vesicle coat complex C 83.0 11 0.00023 40.1 10.2 133 90-242 81-230 (1049)
292 KOG0281 Beta-TrCP (transducin 82.8 5.7 0.00012 36.6 7.3 55 220-283 322-377 (499)
293 KOG1524 WD40 repeat-containing 82.5 53 0.0012 32.4 14.0 82 91-177 77-163 (737)
294 PF06739 SBBP: Beta-propeller 82.4 1.1 2.5E-05 27.0 2.0 18 161-178 13-30 (38)
295 KOG3914 WD repeat protein WDR4 81.7 12 0.00027 35.0 9.2 51 199-250 129-182 (390)
296 KOG0288 WD40 repeat protein Ti 80.9 52 0.0011 31.3 16.7 84 198-284 321-407 (459)
297 smart00564 PQQ beta-propeller 79.5 3.9 8.5E-05 23.2 3.6 22 88-109 5-28 (33)
298 KOG0301 Phospholipase A2-activ 79.1 31 0.00067 34.9 11.4 70 75-145 176-248 (745)
299 KOG1963 WD40 repeat protein [G 78.9 86 0.0019 32.6 20.9 174 81-278 163-359 (792)
300 KOG0295 WD40 repeat-containing 78.9 57 0.0012 30.5 15.3 49 232-284 305-354 (406)
301 PF13570 PQQ_3: PQQ-like domai 78.6 3.6 7.8E-05 24.9 3.4 22 83-105 16-37 (40)
302 KOG0284 Polyadenylation factor 78.0 47 0.001 31.5 11.6 147 80-249 182-337 (464)
303 KOG0308 Conserved WD40 repeat- 77.7 38 0.00082 34.1 11.5 66 76-142 169-238 (735)
304 KOG2394 WD40 protein DMR-N9 [G 77.7 7.5 0.00016 37.9 6.7 68 162-247 292-360 (636)
305 COG4247 Phy 3-phytase (myo-ino 77.4 53 0.0011 29.3 19.2 29 220-249 206-234 (364)
306 smart00284 OLF Olfactomedin-li 77.2 54 0.0012 29.3 17.8 147 78-248 74-251 (255)
307 KOG0295 WD40 repeat-containing 77.1 64 0.0014 30.2 17.4 142 86-248 116-264 (406)
308 KOG0264 Nucleosome remodeling 76.6 72 0.0016 30.5 13.1 142 88-249 189-347 (422)
309 KOG1188 WD40 repeat protein [G 76.2 66 0.0014 29.8 12.2 140 197-371 48-195 (376)
310 KOG1445 Tumor-specific antigen 75.8 26 0.00056 35.2 9.8 119 117-250 721-845 (1012)
311 KOG2096 WD40 repeat protein [G 75.2 69 0.0015 29.5 14.2 71 162-249 88-163 (420)
312 KOG0265 U5 snRNP-specific prot 73.1 74 0.0016 29.0 17.0 112 118-249 49-163 (338)
313 PF11763 DIPSY: Cell-wall adhe 73.0 38 0.00081 26.0 8.0 90 79-178 4-99 (123)
314 PF13570 PQQ_3: PQQ-like domai 72.2 17 0.00037 21.8 5.2 38 329-371 1-38 (40)
315 KOG1215 Low-density lipoprotei 72.1 1.5E+02 0.0032 31.9 21.0 186 122-367 441-634 (877)
316 KOG0645 WD40 repeat protein [G 71.4 78 0.0017 28.5 21.7 153 76-249 12-180 (312)
317 KOG4547 WD40 repeat-containing 71.3 1.1E+02 0.0024 30.3 13.9 86 196-284 77-164 (541)
318 PF11725 AvrE: Pathogenicity f 70.4 31 0.00067 38.7 9.8 31 216-249 486-516 (1774)
319 KOG0649 WD40 repeat protein [G 70.1 79 0.0017 28.0 21.1 43 158-218 112-155 (325)
320 KOG0649 WD40 repeat protein [G 70.1 79 0.0017 28.0 16.3 68 80-147 116-188 (325)
321 KOG4227 WD40 repeat protein [G 69.7 1E+02 0.0022 29.2 13.0 114 117-249 57-179 (609)
322 PF01011 PQQ: PQQ enzyme repea 69.4 16 0.00034 21.8 4.5 21 90-110 1-23 (38)
323 PF15416 DUF4623: Domain of un 69.1 58 0.0013 30.2 9.8 58 227-284 140-202 (442)
324 KOG3621 WD40 repeat-containing 68.6 1.4E+02 0.0031 30.5 19.0 59 122-180 81-145 (726)
325 KOG1009 Chromatin assembly com 68.5 67 0.0015 30.4 10.3 95 119-231 68-178 (434)
326 PF02191 OLF: Olfactomedin-lik 68.5 88 0.0019 27.9 17.3 147 78-248 69-246 (250)
327 KOG0294 WD40 repeat-containing 68.4 98 0.0021 28.5 15.2 143 81-251 130-283 (362)
328 KOG0643 Translation initiation 67.9 93 0.002 28.0 19.6 188 116-362 9-210 (327)
329 KOG0301 Phospholipase A2-activ 67.4 1.5E+02 0.0033 30.2 18.4 165 89-284 71-239 (745)
330 KOG0276 Vesicle coat complex C 67.3 1.5E+02 0.0032 30.1 20.1 27 219-245 352-378 (794)
331 KOG0645 WD40 repeat protein [G 65.3 1.1E+02 0.0023 27.7 23.5 113 118-249 16-135 (312)
332 KOG2395 Protein involved in va 65.1 15 0.00033 35.9 5.7 65 80-144 432-498 (644)
333 TIGR03548 mutarot_permut cycli 64.9 1.2E+02 0.0025 28.0 13.4 63 89-152 123-202 (323)
334 PF11768 DUF3312: Protein of u 64.8 36 0.00077 33.8 8.2 64 80-144 261-327 (545)
335 KOG2394 WD40 protein DMR-N9 [G 63.4 26 0.00056 34.4 6.9 87 80-170 292-384 (636)
336 KOG1036 Mitotic spindle checkp 63.4 1.2E+02 0.0026 27.7 17.4 104 122-250 18-125 (323)
337 KOG1009 Chromatin assembly com 63.3 83 0.0018 29.9 9.9 60 219-282 124-183 (434)
338 KOG0321 WD40 repeat-containing 62.7 1.8E+02 0.0039 29.5 14.7 61 224-284 223-292 (720)
339 KOG4532 WD40-like repeat conta 62.4 1.2E+02 0.0026 27.4 12.0 53 197-251 138-190 (344)
340 TIGR03547 muta_rot_YjhT mutatr 62.2 1.3E+02 0.0029 27.8 20.6 38 199-237 168-207 (346)
341 PLN02153 epithiospecifier prot 61.7 1.4E+02 0.003 27.8 22.2 110 100-215 51-175 (341)
342 PF04053 Coatomer_WDAD: Coatom 59.4 1.8E+02 0.0039 28.4 18.7 140 79-249 33-175 (443)
343 KOG1408 WD40 repeat protein [F 58.2 2.3E+02 0.0051 29.3 13.1 103 161-282 597-711 (1080)
344 TIGR03803 Gloeo_Verruco Gloeo_ 57.6 33 0.00072 20.1 4.2 31 171-214 1-31 (34)
345 KOG4328 WD40 protein [Function 57.6 1.9E+02 0.0041 28.1 11.4 30 220-249 324-353 (498)
346 KOG0303 Actin-binding protein 57.3 1.8E+02 0.0039 27.7 14.3 87 195-284 150-236 (472)
347 KOG0918 Selenium-binding prote 57.2 29 0.00064 32.8 5.9 29 223-251 316-344 (476)
348 PF13970 DUF4221: Domain of un 56.7 1.4E+02 0.003 27.7 10.7 100 227-361 52-164 (333)
349 KOG3567 Peptidylglycine alpha- 56.6 23 0.00049 34.2 5.2 20 265-284 467-486 (501)
350 PF00930 DPPIV_N: Dipeptidyl p 56.3 1.7E+02 0.0038 27.3 23.0 135 199-371 158-314 (353)
351 PLN02153 epithiospecifier prot 55.4 1.8E+02 0.0038 27.1 18.8 17 199-215 101-117 (341)
352 TIGR02608 delta_60_rpt delta-6 53.3 41 0.00089 22.2 4.6 43 268-337 4-46 (55)
353 KOG2114 Vacuolar assembly/sort 52.5 3.1E+02 0.0067 29.0 18.8 55 195-251 143-203 (933)
354 KOG2314 Translation initiation 52.2 1.1E+02 0.0024 30.4 9.0 84 198-284 471-557 (698)
355 TIGR03548 mutarot_permut cycli 51.6 2E+02 0.0043 26.5 18.8 53 198-251 138-196 (323)
356 KOG0270 WD40 repeat-containing 50.5 2.4E+02 0.0053 27.2 15.2 57 194-250 261-318 (463)
357 PF13964 Kelch_6: Kelch motif 49.6 31 0.00067 21.7 3.6 36 169-215 9-44 (50)
358 COG4246 Uncharacterized protei 48.3 2.1E+02 0.0045 25.8 10.7 22 122-144 139-161 (340)
359 KOG2315 Predicted translation 48.2 2.9E+02 0.0063 27.5 15.8 80 198-284 250-332 (566)
360 PTZ00459 mucin-associated surf 48.0 11 0.00025 34.4 1.8 21 23-43 1-21 (291)
361 KOG0274 Cdc4 and related F-box 47.9 3.1E+02 0.0067 27.6 21.0 179 128-371 218-399 (537)
362 COG4447 Uncharacterized protei 47.8 2.2E+02 0.0048 25.9 13.9 41 199-239 148-191 (339)
363 KOG0269 WD40 repeat-containing 46.9 2.5E+02 0.0054 29.2 10.8 107 196-305 107-219 (839)
364 COG1770 PtrB Protease II [Amin 46.8 3.4E+02 0.0074 27.9 17.6 77 159-251 127-210 (682)
365 PF03178 CPSF_A: CPSF A subuni 46.6 2.3E+02 0.0051 25.9 14.5 80 199-284 62-148 (321)
366 KOG2314 Translation initiation 46.5 3.2E+02 0.0068 27.4 11.1 100 122-238 450-557 (698)
367 PF14298 DUF4374: Domain of un 45.5 2.6E+02 0.0056 27.2 10.4 113 83-213 279-430 (435)
368 KOG2111 Uncharacterized conser 45.5 2.5E+02 0.0054 25.9 17.3 135 199-370 113-254 (346)
369 KOG1310 WD40 repeat protein [G 45.4 2.6E+02 0.0056 28.0 10.3 112 163-326 53-176 (758)
370 KOG3545 Olfactomedin and relat 44.1 2.3E+02 0.005 25.2 9.9 47 201-250 149-203 (249)
371 KOG0322 G-protein beta subunit 43.1 59 0.0013 29.1 5.3 68 162-247 253-321 (323)
372 KOG1517 Guanine nucleotide bin 40.5 5.3E+02 0.012 28.3 15.5 59 195-255 1275-1339(1387)
373 PLN02193 nitrile-specifier pro 40.3 3.7E+02 0.008 26.4 18.2 137 100-251 194-353 (470)
374 PF07202 Tcp10_C: T-complex pr 39.7 2.3E+02 0.005 23.9 19.3 12 321-332 164-175 (179)
375 KOG1034 Transcriptional repres 39.6 62 0.0013 29.9 5.0 73 170-247 304-381 (385)
376 KOG1524 WD40 repeat-containing 38.4 4.2E+02 0.0091 26.5 16.6 26 223-248 261-286 (737)
377 PRK13614 lipoprotein LpqB; Pro 38.0 4.5E+02 0.0098 26.7 14.5 93 86-178 390-503 (573)
378 KOG4497 Uncharacterized conser 37.3 3.2E+02 0.0069 25.5 9.1 54 222-279 95-148 (447)
379 PLN02193 nitrile-specifier pro 36.7 4.2E+02 0.0091 26.0 20.1 53 198-250 243-303 (470)
380 PF00400 WD40: WD domain, G-be 36.5 85 0.0019 18.0 5.4 27 219-246 12-38 (39)
381 KOG2395 Protein involved in va 36.3 4.5E+02 0.0098 26.3 13.5 129 89-236 344-489 (644)
382 TIGR02171 Fb_sc_TIGR02171 Fibr 35.9 3.2E+02 0.007 29.2 10.1 60 199-258 329-394 (912)
383 KOG3621 WD40 repeat-containing 35.8 1.2E+02 0.0027 30.9 6.8 64 80-145 126-197 (726)
384 KOG0274 Cdc4 and related F-box 35.3 4.8E+02 0.01 26.3 22.9 149 75-251 246-402 (537)
385 COG4590 ABC-type uncharacteriz 34.2 3.2E+02 0.007 26.7 8.9 29 220-250 359-387 (733)
386 KOG0277 Peroxisomal targeting 34.1 3.5E+02 0.0076 24.3 12.5 52 197-248 36-90 (311)
387 PF07676 PD40: WD40-like Beta 33.9 1E+02 0.0022 18.0 4.3 17 223-239 13-29 (39)
388 COG4590 ABC-type uncharacteriz 33.3 4.8E+02 0.01 25.6 10.5 139 222-372 224-386 (733)
389 PF04762 IKI3: IKI3 family; I 33.3 6.7E+02 0.014 27.3 20.8 56 89-145 87-149 (928)
390 COG4222 Uncharacterized protei 33.1 4.5E+02 0.0097 25.2 10.7 15 222-236 203-217 (391)
391 PF08309 LVIVD: LVIVD repeat; 33.0 1.2E+02 0.0026 18.7 4.2 26 346-372 4-29 (42)
392 KOG0276 Vesicle coat complex C 32.9 5.5E+02 0.012 26.2 21.8 141 88-247 66-212 (794)
393 PF01403 Sema: Sema domain; I 32.7 4E+02 0.0086 25.8 10.0 22 229-250 70-93 (433)
394 KOG3567 Peptidylglycine alpha- 32.6 65 0.0014 31.2 4.2 23 157-179 463-485 (501)
395 KOG0918 Selenium-binding prote 31.3 1.7E+02 0.0037 28.0 6.5 19 220-238 390-408 (476)
396 KOG0305 Anaphase promoting com 29.7 5.7E+02 0.012 25.4 19.7 178 79-284 218-407 (484)
397 PF15492 Nbas_N: Neuroblastoma 29.1 2.4E+02 0.0052 25.6 6.9 66 165-250 2-74 (282)
398 KOG1645 RING-finger-containing 28.4 2.4E+02 0.0053 27.0 7.0 73 161-250 194-267 (463)
399 PRK12641 flgF flagellar basal 28.4 4.3E+02 0.0093 23.6 10.2 13 165-177 132-144 (252)
400 KOG0269 WD40 repeat-containing 28.3 7.1E+02 0.015 26.1 12.2 53 91-144 148-205 (839)
401 PF14157 YmzC: YmzC-like prote 28.3 81 0.0018 21.4 2.9 16 199-214 41-56 (63)
402 PRK12690 flgF flagellar basal 27.1 3.3E+02 0.0072 24.0 7.6 12 165-176 137-148 (238)
403 KOG0313 Microtubule binding pr 26.7 5.6E+02 0.012 24.4 14.9 68 75-144 257-328 (423)
404 KOG1272 WD40-repeat-containing 26.3 3.1E+02 0.0068 26.8 7.4 17 162-178 295-311 (545)
405 COG4993 Gcd Glucose dehydrogen 26.0 7.4E+02 0.016 25.5 22.6 43 66-108 183-235 (773)
406 KOG0647 mRNA export protein (c 26.0 5.3E+02 0.011 23.8 20.4 225 67-349 16-254 (347)
407 PF02191 OLF: Olfactomedin-lik 25.9 4.8E+02 0.01 23.3 15.4 40 197-236 87-138 (250)
408 PF12894 Apc4_WD40: Anaphase-p 24.1 2E+02 0.0042 18.2 4.2 28 223-251 16-43 (47)
409 PF14251 DUF4346: Domain of un 23.8 2.4E+02 0.0053 21.8 5.1 21 222-242 43-63 (119)
410 PF11763 DIPSY: Cell-wall adhe 23.7 3.5E+02 0.0076 20.9 10.7 19 265-283 82-100 (123)
411 PRK13613 lipoprotein LpqB; Pro 23.6 8.1E+02 0.017 25.1 17.1 150 80-251 364-541 (599)
412 PRK13614 lipoprotein LpqB; Pro 22.7 8.2E+02 0.018 24.9 17.6 168 94-284 316-505 (573)
413 KOG1230 Protein containing rep 22.5 7.2E+02 0.016 24.1 10.9 133 134-280 94-247 (521)
414 KOG0267 Microtubule severing p 22.4 1.9E+02 0.0042 29.8 5.5 83 197-284 90-173 (825)
415 PF06079 Apyrase: Apyrase; In 22.2 3.3E+02 0.0072 24.9 6.6 45 319-364 73-121 (291)
416 PRK12640 flgF flagellar basal 21.5 4E+02 0.0087 23.7 7.1 12 165-176 135-146 (246)
417 smart00706 TECPR Beta propelle 20.8 1.5E+02 0.0033 16.9 3.0 25 80-104 9-33 (35)
418 PRK10115 protease 2; Provision 20.6 9.7E+02 0.021 24.9 22.3 72 165-248 176-254 (686)
419 KOG1063 RNA polymerase II elon 20.4 9.7E+02 0.021 24.8 9.9 99 81-180 270-381 (764)
420 KOG2114 Vacuolar assembly/sort 20.4 1.1E+03 0.023 25.3 15.1 61 83-144 130-199 (933)
421 PF05131 Pep3_Vps18: Pep3/Vps1 20.1 4.7E+02 0.01 21.1 7.7 61 80-144 35-101 (147)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=4.1e-49 Score=353.94 Aligned_cols=310 Identities=31% Similarity=0.540 Sum_probs=264.8
Q ss_pred cccccccCceEecCCCCCCCccEEEc-CCCcEEEEecCCeEEEEeC------Cc-----eEEEEecCCCcccCeEEcCCC
Q 017371 62 LSATQLQDFIKVGEGSVNHPEDASMD-KNGVIYTATRDGWIKRLQD------GT-----WVNWKFIDSQTLVGLTSTKEG 129 (372)
Q Consensus 62 ~~~~~l~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~g~i~~~~~------g~-----~~~~~~~~~~p~~gl~~d~dG 129 (372)
.+++.+...|.+..+....|+.+.+. .+--+|.+...|+|-+.+. .. .......||+|+ ||+++..|
T Consensus 48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g 126 (376)
T KOG1520|consen 48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG 126 (376)
T ss_pred ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence 44554555555544444444444443 2223677777888777651 11 122235689999 99999777
Q ss_pred -CEEEEeCCCcEEEEcCC-C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371 130 -HLIICDNANGLHKVSED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (372)
Q Consensus 130 -~l~v~~~~~gv~~~~~~-g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 206 (372)
+|||+|++.|++.++.+ | .+.+.....|.++.+.|+++++++|.|||||+|++|++.++...++++.++||+++||+
T Consensus 127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~ 206 (376)
T KOG1520|consen 127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP 206 (376)
T ss_pred CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence 99999999999999954 4 77777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 017371 207 SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 286 (372)
Q Consensus 207 ~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~ 286 (372)
.|++.+++.+++.+|||+++++|+++++++++...||.|||++|++.++.+.|++++||+||||+.+++|++||+....|
T Consensus 207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcchhHHHHHHhcCcccccccc----CCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCC
Q 017371 287 ARRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 362 (372)
Q Consensus 287 ~~~~~~~~~~~~~r~~~~~~p~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~ 362 (372)
+..++++.+||++|+++.++|........ ..++..|.+.|.+|+++++++|.+|.....++.+.|.+|+||+||..
T Consensus 287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~ 366 (376)
T KOG1520|consen 287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF 366 (376)
T ss_pred chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence 99999999999999999999766543222 23446677777999999999999999999999999999999999999
Q ss_pred CCeEEEEeCC
Q 017371 363 SNFIGKVQLS 372 (372)
Q Consensus 363 ~~~i~~~~~~ 372 (372)
+++|+++||.
T Consensus 367 ~p~i~~lkl~ 376 (376)
T KOG1520|consen 367 NPYIARLKLP 376 (376)
T ss_pred cceeEEEecC
Confidence 9999999974
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.97 E-value=2e-28 Score=219.43 Aligned_cols=229 Identities=28% Similarity=0.445 Sum_probs=180.1
Q ss_pred CccEEEcC-CCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc-CCC-cEEEee
Q 017371 81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLS 153 (372)
Q Consensus 81 p~~i~~d~-~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~g-~~~l~~ 153 (372)
||++++|+ +|.||+.+ .+++|++++ +++.+.+... .|. |++++ ++|+||+++. .++..++ .+| ++.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS--SEE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence 68899996 89999999 789999999 4445444443 388 99999 8899999986 5677778 777 777776
Q ss_pred ecCCc-ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371 154 YVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232 (372)
Q Consensus 154 ~~~~~-~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~ 232 (372)
...+. ++..+|++++|++|+||++++..... .....|+||+++++ ++.+.+..++..|||+++++|++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence 64344 67899999999999999998742110 00011889999998 899999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEccCC--CCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371 233 VVVCESWKFRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 308 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~ 308 (372)
||++++..++|++|+++.. .....+.+.+. ..+.|||+++|++|+|||+.+.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------------------------ 203 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------------------------ 203 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------------------------
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------------------------
Confidence 9999999999999999743 24445555432 3346999999999999999987
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE---CCEEEEEeC
Q 017371 309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISL 361 (372)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~---~g~L~igs~ 361 (372)
.+.|.+++++|+++..+..|.. .++++++. .++|||.+.
T Consensus 204 ----------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 ----------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred ----------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 6799999999999999998832 47888884 378999985
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=8.4e-27 Score=211.86 Aligned_cols=247 Identities=26% Similarity=0.428 Sum_probs=190.8
Q ss_pred ccCceEecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE
Q 017371 67 LQDFIKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV 143 (372)
Q Consensus 67 l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~ 143 (372)
+.....+++|+++.|+ .+.||+.+ ..++|++++ +|+.+.|..+...+. ++.+++.|.|++++. |+.++
T Consensus 20 ~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~ 90 (307)
T COG3386 20 LDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLL 90 (307)
T ss_pred eecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEE
Confidence 3444555555554443 55688888 789999999 688999988888888 999999999988864 56666
Q ss_pred c-CCC-c-EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371 144 S-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220 (372)
Q Consensus 144 ~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~ 220 (372)
+ +++ . +.+.....+.+...+|++.++++|++||++++. + + ....+....|.||++||.++..+.+...+..
T Consensus 91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~--~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 91 DPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D--LGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred eccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c--cCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6 555 4 777777777778899999999999999999863 1 1 2334456778999999964444444444999
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEEcc---CCCCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371 221 ANGVALSRDEDYVVVCESWKFRCRKYWLK---GERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 296 (372)
Q Consensus 221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---g~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~ 296 (372)
|||++||||++.+|++++..++|++|+.+ +..... ...+.+..+|.|||+++|++|+||++....
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~----------- 233 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG----------- 233 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-----------
Confidence 99999999999999999999999999987 332222 234444577999999999999999744431
Q ss_pred hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC---CEEEEEeCCCCe
Q 017371 297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSNF 365 (372)
Q Consensus 297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~~~~ 365 (372)
.++|.+|+++|+.+..+..|.. .++++++.+ ++|||.+...+.
T Consensus 234 ----------------------g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 234 ----------------------GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ----------------------CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence 3489999999999999999863 477788865 899999988743
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.86 E-value=2.1e-19 Score=154.13 Aligned_cols=233 Identities=16% Similarity=0.149 Sum_probs=177.8
Q ss_pred CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEE
Q 017371 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF 151 (372)
Q Consensus 78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l 151 (372)
-..|..++.++||.+|++. ..|.|-++| +|+++++.-. +..|. ++.+++||..||+|...+|.+++ ++. ++.+
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence 3589999999999999987 678889999 8999888654 45789 99999999999999888999999 566 6554
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg 230 (372)
.-...- .....+...+|++|++||+... |---|+||.++.++++.. .-..|+||+..|||
T Consensus 140 ~lp~~~-a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG 200 (353)
T COG4257 140 PLPLEH-ADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG 200 (353)
T ss_pred eccccc-CCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence 322111 1124567889999999998543 222278888877777543 34568999999999
Q ss_pred CEEEEEeCCCCeEEEEEccCCCCcceeeec--cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371 231 DYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 308 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~ 308 (372)
. +|+++...+-|.+++.... ..+.+. +.+...-..+-.|+.|++|++++.
T Consensus 201 s-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg------------------------ 252 (353)
T COG4257 201 S-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------------------------ 252 (353)
T ss_pred c-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccC------------------------
Confidence 7 9999888889999987543 223332 111222456788999999999998
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC-CEEEEEeCCCCeEEEEe
Q 017371 309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~igs~~~~~i~~~~ 370 (372)
.+.+.+||+.-+.=..|..|+.+ ....++..++ +++|+.....+.|.++|
T Consensus 253 ----------~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 253 ----------TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred ----------CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence 68999999987776778887543 3456666664 99999999999999987
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.85 E-value=1.7e-18 Score=182.17 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=177.7
Q ss_pred CCCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CCceEEEEec---------------CCCcccCeEEcCCCC-EEEEeCC
Q 017371 77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA 137 (372)
Q Consensus 77 ~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g~~~~~~~~---------------~~~p~~gl~~d~dG~-l~v~~~~ 137 (372)
.+..|.++++|+ +|.||+++ .+++|.+++ +|........ .+.|. |++++++|+ |||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence 478899999996 68899999 788999999 7765433221 23589 999998775 8999876
Q ss_pred -CcEEEEc-CCC-cEEEeee------cCC------cccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeE
Q 017371 138 -NGLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 201 (372)
Q Consensus 138 -~gv~~~~-~~g-~~~l~~~------~~~------~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v 201 (372)
+.|.+++ .++ ++.+... ..+ ..+..|.++++++ +|.+||+|. .+++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----------------~~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----------------GQHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----------------CCCeE
Confidence 4578888 566 6666431 011 1256788999998 789999986 46788
Q ss_pred EEEeCCCCeEEEEe---------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCccee---------
Q 017371 202 LKYDPSSNITTLVA---------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE--------- 257 (372)
Q Consensus 202 ~~~d~~t~~~~~~~---------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~--------- 257 (372)
+++|..++.+..+. ..+..|+|+++++|++.+||+++.+++|.+|++++.......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 88888777665432 124678999999999999999999999999998753211000
Q ss_pred --eecc-------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC
Q 017371 258 --TFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 328 (372)
Q Consensus 258 --~~~~-------~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~ 328 (372)
.+.+ .....|.++++|++|++||++.. ++.|.++|.+
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~ 833 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPA 833 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECC
Confidence 0000 01125899999999999999987 6789999987
Q ss_pred CcEEEEEECC------CC----CeeccceeeEEE-CCEEEEEeCCCCeEEEEeCC
Q 017371 329 GTIIRNLVDP------TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 329 g~~~~~~~~~------~g----~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~~ 372 (372)
+..+..+... +| ..++.+.++..+ +|+||+++..++.|.+++++
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6554443221 11 124567888886 68999999999999999863
No 6
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.83 E-value=1.5e-20 Score=137.54 Aligned_cols=88 Identities=52% Similarity=0.965 Sum_probs=74.7
Q ss_pred cceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCe
Q 017371 164 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 242 (372)
Q Consensus 164 ~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~ 242 (372)
|+++++++ |.|||||+|.+|+..++..+++++.++|+|++|||.|++.+++++++.+||||++++|+++++|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 57899998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 017371 243 CRKYWLKGE 251 (372)
Q Consensus 243 i~~~~~~g~ 251 (372)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.77 E-value=3.4e-16 Score=134.61 Aligned_cols=238 Identities=10% Similarity=0.066 Sum_probs=175.3
Q ss_pred CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcc---cCeEEcCCCCEEEEeCCCcE-EE
Q 017371 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTL---VGLTSTKEGHLIICDNANGL-HK 142 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~---~gl~~d~dG~l~v~~~~~gv-~~ 142 (372)
++++++.|.-..|+.|.++++|..|+.+....|.|++ +.++++|.-+..++. ....||+.|+||.+.. .|. -+
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGr 172 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGR 172 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-ccccee
Confidence 6777777766789999999999999999655799999 678888876554432 1578999999999864 343 36
Q ss_pred Ec-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--
Q 017371 143 VS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-- 218 (372)
Q Consensus 143 ~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-- 218 (372)
+| ..+ ++++... ....+++|++.+||.+|++.- ....|.++||.++..+++...-
T Consensus 173 LdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~~ 231 (353)
T COG4257 173 LDPARNVISVFPAP----QGGGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNAL 231 (353)
T ss_pred cCcccCceeeeccC----CCCCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCcc
Confidence 77 455 6666443 224789999999999999743 2346899999888666553221
Q ss_pred -cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371 219 -YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 296 (372)
Q Consensus 219 -~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~ 296 (372)
....++-.++.|+ +|+++.++.++.+|+..... ...+. ......|..+.+|..|++|.++..
T Consensus 232 ~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~------------ 295 (353)
T COG4257 232 KAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEAD------------ 295 (353)
T ss_pred cccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccc------------
Confidence 1123455667775 99999999999999986532 22221 122236889999999999999988
Q ss_pred hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEe
Q 017371 297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~ 370 (372)
.+.|.+||++...+.+|..+..+ ...+..+ .|.+|++-..-+.+.+.+
T Consensus 296 ----------------------agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 296 ----------------------AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ----------------------cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence 67899999999888898877543 1123333 589999998888887765
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.71 E-value=2.5e-15 Score=158.32 Aligned_cols=188 Identities=16% Similarity=0.245 Sum_probs=135.9
Q ss_pred CCCCccEEEcCCC-cEEEEe-cCCeEEEEe--CCceEEEEec-----------------CCCcccCeEEcC-CCCEEEEe
Q 017371 78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI-----------------DSQTLVGLTSTK-EGHLIICD 135 (372)
Q Consensus 78 ~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~~-----------------~~~p~~gl~~d~-dG~l~v~~ 135 (372)
+..|.+|++|++| .||+++ .+++|.+++ ++.++++... .+.|. ++++++ +|.|||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 5679999999876 589999 577888898 5666655321 24688 999998 68899998
Q ss_pred CC-CcEEEEc-CCC-cEEEeee-----cC-----CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeE
Q 017371 136 NA-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL 201 (372)
Q Consensus 136 ~~-~gv~~~~-~~g-~~~l~~~-----~~-----~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v 201 (372)
.. +.|.+++ .+| ...+... .. ...+..|++|+++++|. |||+|. .+++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-----------------~n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-----------------ESSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-----------------CCCeE
Confidence 76 5688888 566 5444311 00 12356789999999986 999986 46789
Q ss_pred EEEeCCCCeEEEEeC----------------------CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceee-
Q 017371 202 LKYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET- 258 (372)
Q Consensus 202 ~~~d~~t~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~- 258 (372)
.++|++++....+.. .+..|.|++++++|+ +||+++.+++|.+|+.++........
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999988766544321 134689999999997 99999999999999987643221100
Q ss_pred ----ecc-----CCCCCCceeEEcCCCCEEEEEec
Q 017371 259 ----FAE-----NLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 259 ----~~~-----~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+.+ .....|.++++|++|++||++..
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 000 01125899999999999999987
No 9
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.67 E-value=8.3e-14 Score=131.84 Aligned_cols=173 Identities=22% Similarity=0.253 Sum_probs=123.4
Q ss_pred ceEecCC-CCCCCccEEEcCCCcEEEEec------------CC-eEEEEe----CCc---eEEEEecCCCcccCeEEcCC
Q 017371 70 FIKVGEG-SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGT---WVNWKFIDSQTLVGLTSTKE 128 (372)
Q Consensus 70 ~~~~~~g-~~~~p~~i~~d~~G~l~v~~~------------~g-~i~~~~----~g~---~~~~~~~~~~p~~gl~~d~d 128 (372)
++.+... .+..|..|++|++|+||+++. .+ +|++++ +|. .+.+......|. ||++.++
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~ 82 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG 82 (367)
T ss_pred EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence 3445543 478999999999999999962 23 899987 343 466777778899 9999988
Q ss_pred CCEEEEeCCCcEEEEc-CC------C-cEEEeeecCCc---ccccccceEEccCCcEEEEeCCCCCCCc--ccccccccc
Q 017371 129 GHLIICDNANGLHKVS-ED------G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLPH--EYCLDILEG 195 (372)
Q Consensus 129 G~l~v~~~~~gv~~~~-~~------g-~~~l~~~~~~~---~~~~~~~l~~d~dG~i~vtd~~~~~~~~--~~~~~~~~~ 195 (372)
| |||++. ..|+++. .+ + .+.+....+.. ..+.++++++++||+||+++.+...... .........
T Consensus 83 G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 8 999875 4588874 32 2 34555544433 3577899999999999998764211000 000011122
Q ss_pred cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371 196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 246 (372)
Q Consensus 196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 246 (372)
...|+++++||++++.+++..++.+|+|++++++|+ +|+++.......++
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i 210 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV 210 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence 245789999999999999999999999999999987 88888755444443
No 10
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.66 E-value=6.3e-14 Score=118.08 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=148.1
Q ss_pred CCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC--CEEEEeCCC--cEEEEc-CCC-cEEEeee---cC
Q 017371 89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNAN--GLHKVS-EDG-VENFLSY---VN 156 (372)
Q Consensus 89 ~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG--~l~v~~~~~--gv~~~~-~~g-~~~l~~~---~~ 156 (372)
.+.||..+ ..|.|+|+| .+.+....- .+.|..|..+--.| ..+.+.-+. ++..+| -.. ..++.+- .+
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 45676666 788999998 444433221 12223255543222 345444343 344444 122 2222221 12
Q ss_pred CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 236 (372)
.......|+--+||+|+.|...++. ++ ..+| ...|.||+.-+ .++++.+...+..+||++|+.|.+.+|+.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEE
Confidence 2233456788899999999887651 11 1112 12355665555 48899988889999999999999999999
Q ss_pred eCCCCeE--EEEEccCCCCcceeeeccC------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371 237 ESWKFRC--RKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 308 (372)
Q Consensus 237 ~~~~~~i--~~~~~~g~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~ 308 (372)
++.+..| +.|+..++.+.+.....+. .+-.|||+++|.+|+|||+++.
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------------------------ 231 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------------------------ 231 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------------------------
Confidence 9999999 5555666655554433321 2347999999999999999998
Q ss_pred cccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEEC---CEEEEEeC
Q 017371 309 LFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 361 (372)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~ 361 (372)
.+.|+++|+. |+++..+..|.. .+|++++.+ +.+|+.+.
T Consensus 232 ----------g~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 ----------GGTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ----------CcEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEeh
Confidence 6899999975 999999988854 488888875 45777664
No 11
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.59 E-value=9.5e-14 Score=124.34 Aligned_cols=175 Identities=21% Similarity=0.337 Sum_probs=125.0
Q ss_pred CCccEEEc-CCCcEEEEecCCeEEEEe--CCceEEEEec------CCCcccCeEEcCCCCEEEEeCCC---------cEE
Q 017371 80 HPEDASMD-KNGVIYTATRDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGHLIICDNAN---------GLH 141 (372)
Q Consensus 80 ~p~~i~~d-~~G~l~v~~~~g~i~~~~--~g~~~~~~~~------~~~p~~gl~~d~dG~l~v~~~~~---------gv~ 141 (372)
+|.+++++ ++|.+|+++..+ +..++ +++++.+... ..+|+ .+++|++|+||+++... +++
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence 49999999 889999998655 55568 6777766543 34678 99999999999998642 388
Q ss_pred EEcCCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCe---EEEE
Q 017371 142 KVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNI---TTLV 214 (372)
Q Consensus 142 ~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~---~~~~ 214 (372)
+++.++ .+.+... +..||+|++++||+ +|++|+ ..++|++|+.+ +++ .+++
T Consensus 119 ~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds-----------------~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 119 RIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADS-----------------FNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEET-----------------TTTEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCeEEEEecC-----cccccceEECCcchheeeccc-----------------ccceeEEEeccccccceeeeeeE
Confidence 999667 5555433 45789999999995 888877 56789999874 331 2223
Q ss_pred e--CCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc-CC-CCEEEEEe
Q 017371 215 A--DGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PD-GTFWIAII 283 (372)
Q Consensus 215 ~--~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d-~~-G~lwva~~ 283 (372)
. ... ..|.|++++.+|+ ||++....++|++|+.+|...... . .....|.++++. ++ +.|||++.
T Consensus 177 ~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i---~-~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 177 IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREI---E-LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEE---E--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEE---c-CCCCCEEEEEEECCCCCEEEEEeC
Confidence 2 222 3589999999997 999999999999999886432221 1 111368999994 44 57999875
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=2e-11 Score=114.17 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=150.8
Q ss_pred CceEecCCCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceEEEE--ecCCCcccCeEEcCCCC-EEEEeCC-Cc
Q 017371 69 DFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NG 139 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~~~~--~~~~~p~~gl~~d~dG~-l~v~~~~-~g 139 (372)
.+..+..+ .+|..++++++| .||+++ .++.|..|+ +|+++... ...+.|. +++++++|+ ||++... ..
T Consensus 27 ~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCe
Confidence 34444433 479999999988 478887 577887666 45554332 2345788 999999996 7777644 34
Q ss_pred EEEEc--CCC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEE-
Q 017371 140 LHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL- 213 (372)
Q Consensus 140 v~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~- 213 (372)
+..++ ++| ........++ ...+..++++++| .+|+++. ..+.|..||.++ +....
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~-----------------~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCL-----------------KEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeC-----------------CCCEEEEEEECCCCccccc
Confidence 66665 455 3222111222 1357788999998 4667654 456787777654 33221
Q ss_pred -----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeec---cC--CCCCCceeEEcCCCC-EEE
Q 017371 214 -----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFA---EN--LPGAPDNINLAPDGT-FWI 280 (372)
Q Consensus 214 -----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~---~~--~~g~p~~i~~d~~G~-lwv 280 (372)
-......|.+++++|||+++|+++...+.|..|+++.. +......+. .. .+..+..+.++++|+ +|+
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 11223568899999999999999988889999988632 221111111 10 112345688999996 788
Q ss_pred EEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEEC-CCCCeeccceeeEE--ECCEEE
Q 017371 281 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLY 357 (372)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g~L~ 357 (372)
++... +.-.++.++.++........ +.|. .+..+.. ++.+||
T Consensus 245 ~~~~~--------------------------------~~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 245 CDRTA--------------------------------SLISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLI 289 (330)
T ss_pred ecCCC--------------------------------CeEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEE
Confidence 75431 12345666666543222211 2221 2334444 457999
Q ss_pred EEeCCCCeEEEEeC
Q 017371 358 VISLTSNFIGKVQL 371 (372)
Q Consensus 358 igs~~~~~i~~~~~ 371 (372)
+++...+.|.++++
T Consensus 290 va~~~~~~v~v~~~ 303 (330)
T PRK11028 290 AAGQKSHHISVYEI 303 (330)
T ss_pred EEEccCCcEEEEEE
Confidence 99988899999875
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=4.9e-11 Score=112.11 Aligned_cols=252 Identities=19% Similarity=0.275 Sum_probs=157.4
Q ss_pred cccCceEecCCCCCCCccEEEcCCC-cEEEEec----CCeEEEEe---C-CceEEE---EecCCCcccCeEEcCCCC-EE
Q 017371 66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTATR----DGWIKRLQ---D-GTWVNW---KFIDSQTLVGLTSTKEGH-LI 132 (372)
Q Consensus 66 ~l~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~----~g~i~~~~---~-g~~~~~---~~~~~~p~~gl~~d~dG~-l~ 132 (372)
.|.....+.. ...|..+++++++ .||+++. .|.|..+. + |+.+.+ ...+..|. .++++++|+ ||
T Consensus 26 ~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~ 102 (345)
T PF10282_consen 26 TLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLY 102 (345)
T ss_dssp EEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEE
T ss_pred CceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEE
Confidence 3444444433 4689999999766 7888874 57887776 4 665544 33566788 999999986 78
Q ss_pred EEeCCCc-EEE--EcCCC-cEEEeeec----C-----CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCC
Q 017371 133 ICDNANG-LHK--VSEDG-VENFLSYV----N-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH 198 (372)
Q Consensus 133 v~~~~~g-v~~--~~~~g-~~~l~~~~----~-----~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~ 198 (372)
+++...| +.. ++.+| +....... . ......++.+.++|||+ +|++|. +.
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----------------G~ 165 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----------------GA 165 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----------------TT
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----------------CC
Confidence 8876544 444 44567 33321110 0 11234677899999985 888765 45
Q ss_pred CeEEEEeCCCC--eEEE----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeecc---CCCC--
Q 017371 199 GQLLKYDPSSN--ITTL----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAE---NLPG-- 265 (372)
Q Consensus 199 g~v~~~d~~t~--~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~---~~~g-- 265 (372)
.+|+.|+.+.. +++. .......|..++|+||++++|+.+...+.|..|.++. ........... ...+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 57777765433 3433 2244566888999999999999999999999998872 22222222111 1111
Q ss_pred CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC-CCe
Q 017371 266 APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT-GQL 342 (372)
Q Consensus 266 ~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~-g~~ 342 (372)
.+.+|++++||+ |||++... ..-.++.+|+ +|++...-..+. |.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~--------------------------------~sI~vf~~d~~~g~l~~~~~~~~~G~- 292 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGS--------------------------------NSISVFDLDPATGTLTLVQTVPTGGK- 292 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTT--------------------------------TEEEEEEECTTTTTEEEEEEEEESSS-
T ss_pred CceeEEEecCCCEEEEEeccC--------------------------------CEEEEEEEecCCCceEEEEEEeCCCC-
Confidence 477899999995 88888761 1235666654 365543222222 33
Q ss_pred eccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371 343 MSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 343 ~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~ 372 (372)
.+..+..+ +..||+++..++.|.++++|
T Consensus 293 --~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 --FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 36667664 57899999999999998763
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=8e-11 Score=110.70 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=124.9
Q ss_pred cccCceEecCCCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceEEEE--------------ecCCCcccCeEEc
Q 017371 66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--------------FIDSQTLVGLTST 126 (372)
Q Consensus 66 ~l~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~~~~--------------~~~~~p~~gl~~d 126 (372)
.|..+.....+ -..|.+++++++| .||+++ .+|.|..++ +|++.... ....+|+ .+.++
T Consensus 75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~ 152 (345)
T PF10282_consen 75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS 152 (345)
T ss_dssp EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence 34444444422 2589999999887 688888 688887776 46544321 1235678 89999
Q ss_pred CCCC-EEEEeCC-CcEEEEc--C-CC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCC
Q 017371 127 KEGH-LIICDNA-NGLHKVS--E-DG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHG 199 (372)
Q Consensus 127 ~dG~-l~v~~~~-~gv~~~~--~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g 199 (372)
|||+ +||++.+ ..|+.++ . .+ +.... .........|.+++++++| .+|+.+. ..+
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e-----------------~s~ 214 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNE-----------------LSN 214 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEET-----------------TTT
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecC-----------------CCC
Confidence 9986 8888876 4566666 2 23 33322 1122333578999999998 4777643 234
Q ss_pred eE--EEEeCCCCeEEEEe------C---CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccCCCCC
Q 017371 200 QL--LKYDPSSNITTLVA------D---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAENLPGA 266 (372)
Q Consensus 200 ~v--~~~d~~t~~~~~~~------~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~g~ 266 (372)
.| +.++..+++++.+. . +...+.+++++|||++||+++.+.+.|..|.++.. ++.....+. .....
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~ 293 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKF 293 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSS
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCC
Confidence 44 45554466655532 1 12357789999999999999999999999998542 333322222 22336
Q ss_pred CceeEEcCCCC-EEEEEec
Q 017371 267 PDNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 267 p~~i~~d~~G~-lwva~~~ 284 (372)
|.+++++++|+ |||++..
T Consensus 294 Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEEEE-TTSSEEEEEETT
T ss_pred ccEEEEeCCCCEEEEEecC
Confidence 99999999996 7776654
No 15
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=8e-10 Score=99.09 Aligned_cols=189 Identities=17% Similarity=0.254 Sum_probs=123.9
Q ss_pred CCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceE----EEEecCC---------CcccCeEEcCCCC-EEEEeCC-C
Q 017371 79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWV----NWKFIDS---------QTLVGLTSTKEGH-LIICDNA-N 138 (372)
Q Consensus 79 ~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~----~~~~~~~---------~p~~gl~~d~dG~-l~v~~~~-~ 138 (372)
..|..+++|++| .|++++ ..|.|.++. +|.+. .+...+. .+. ...++|+|+ |+++|.+ .
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 457899999999 677777 567776665 56533 2222222 245 667889995 6666765 4
Q ss_pred cEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371 139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 216 (372)
Q Consensus 139 gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~ 216 (372)
.++.++ .+| ++.... ..-.+...|..|+|.|+|++-.. +.|...+=.++.||+..++++.+..
T Consensus 168 ri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~--------------v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 168 RIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYL--------------VNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred eEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEE--------------EeccCCEEEEEEEcCCCceEEEeee
Confidence 577777 677 443221 11133457889999999975442 2233344457888887788877542
Q ss_pred ---------CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 217 ---------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 217 ---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+-.....|.+++||++||+++.+.+.|..|.++. .++.-. .......-.|..+.+++.|++.++...
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEeccCCcCCccceeCCCCCEEEEEcc
Confidence 2223345789999999999999999998887763 222221 112122225999999999998888876
No 16
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.37 E-value=3.6e-11 Score=112.11 Aligned_cols=156 Identities=19% Similarity=0.313 Sum_probs=93.4
Q ss_pred CCCCccEEEcCCCcEEEEecCCeEEEEe-CCce-EEEEec-------CCCcccCeEEcCC----CCEEEEeCC-------
Q 017371 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNWKFI-------DSQTLVGLTSTKE----GHLIICDNA------- 137 (372)
Q Consensus 78 ~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~-~~~~~~-------~~~p~~gl~~d~d----G~l~v~~~~------- 137 (372)
|..|.+|++.++|++|++...|+|++++ +|.. ..+... ....+ ||+++|+ +.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence 3579999999999999999999999999 7765 333221 12346 9999984 889998652
Q ss_pred --CcEEEEc--CC-C----cEEEeeecCC--cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371 138 --NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (372)
Q Consensus 138 --~gv~~~~--~~-g----~~~l~~~~~~--~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 206 (372)
..|.++. .. . .+.+....+. ...+.-..|++++||.||++..+... .+... ......|.|+|+++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~--~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ--DPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC--STTSSTTEEEEEET
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc--ccccccceEEEecc
Confidence 1477666 22 1 3334333232 33456677999999999998654211 00011 11224577888876
Q ss_pred CCC-------------eEEEEeCCccCcceEEEecCCCEEEEEeC
Q 017371 207 SSN-------------ITTLVADGFYFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 207 ~t~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~ 238 (372)
+.. ..++++.++.+|.+++|++....||+++.
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~ 200 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADN 200 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEcc
Confidence 532 23556666677777777766334665553
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=9.3e-10 Score=102.92 Aligned_cols=228 Identities=12% Similarity=0.125 Sum_probs=137.3
Q ss_pred cEEEEe-cCCeEEEEe---CCceEEEE--ecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc--CCC-cEEEeeecCCcc
Q 017371 91 VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK 159 (372)
Q Consensus 91 ~l~v~~-~~g~i~~~~---~g~~~~~~--~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~--~~g-~~~l~~~~~~~~ 159 (372)
.+|+++ .++.|..|+ +|+.+... ...+.+. .++++++|+ ||++... .++..++ .+| ++.......+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence 478887 577888888 35544322 3346788 999999996 7787543 5676555 456 5433322111
Q ss_pred cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeE---EEEeCCccCcceEEEecCCCEEE
Q 017371 160 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT---TLVADGFYFANGVALSRDEDYVV 234 (372)
Q Consensus 160 ~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~---~~~~~~~~~~~gi~~~~dg~~l~ 234 (372)
..|..++++++|+ +|++.. ..+.|..|+.++ +.. .....+...|.+++++||++++|
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~-----------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASY-----------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred -CCceEEEECCCCCEEEEEEc-----------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 2467899999996 666543 346666666542 221 11223456688999999999999
Q ss_pred EEeCCCCeEEEEEccCC-CCcce--eeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371 235 VCESWKFRCRKYWLKGE-RKGKL--ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 310 (372)
Q Consensus 235 v~~~~~~~i~~~~~~g~-~~~~~--~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~ 310 (372)
+++...+.|..|+++.. ..... ..........|..++++++|+ +|+++...
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~------------------------- 196 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN------------------------- 196 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-------------------------
Confidence 99999999999998642 11110 111101223589999999995 77876531
Q ss_pred cccccCCCceEEEEECC-CCcE--EEEEEC-CCC-CeeccceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371 311 SQFITLGGGAHLIHVAE-DGTI--IRNLVD-PTG-QLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 311 ~~~~~~~~~~~v~~~~~-~g~~--~~~~~~-~~g-~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~ 371 (372)
..-.++.++. .|+. ++.+.. +.. ....+...+.. ++..||+++...+.|.++++
T Consensus 197 -------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 197 -------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred -------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 0223444443 2433 333321 111 11112334444 34679999888899998875
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.32 E-value=8.1e-09 Score=94.33 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=143.0
Q ss_pred CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC--cE
Q 017371 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VE 149 (372)
Q Consensus 79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g--~~ 149 (372)
..|.+++++++|. +|++. .++.|..++ +++..........+. .++++++|+ +|++... ..+..++ .++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 3578899999885 66665 678899998 455443223334566 888999987 6666543 4577777 444 22
Q ss_pred EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (372)
Q Consensus 150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d 229 (372)
.+. .+ ..+.+++++++|+++++... ....++.+|..+++..........+..+++++|
T Consensus 110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 221 11 24578999999987775331 123466678776655432222345778999999
Q ss_pred CCEEEEEeCCCCeEEEEEccCCCCcceeeecc-C---CCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHH
Q 017371 230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLA 304 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~---~~g~p~~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~ 304 (372)
++.++++....+.|..|++.+.+....-.+.. . ....|.+++++++|+. |++...
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-------------------- 227 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-------------------- 227 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--------------------
Confidence 99888876667789999887543211111110 0 1123667899999975 666544
Q ss_pred hcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEE--ECCEEEEEeCCCCeEEEEeCC
Q 017371 305 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 305 ~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~~ 372 (372)
.+.+..+|. +++.+..+.. +. .+.++.. ++..||+++...+.|.+++++
T Consensus 228 --------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 --------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 235666664 3565544432 21 2445555 346788887777888888763
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.31 E-value=4.8e-10 Score=106.24 Aligned_cols=205 Identities=20% Similarity=0.198 Sum_probs=122.5
Q ss_pred CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CC------ceEEEEec--------CCCcccCeEEcCCCCEE
Q 017371 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG------TWVNWKFI--------DSQTLVGLTSTKEGHLI 132 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g------~~~~~~~~--------~~~p~~gl~~d~dG~l~ 132 (372)
..+.+.++ +..|++|++.++| ||+++ ..+|+++. ++ +.+.+... ...+. ++++++||.||
T Consensus 63 ~~~vfa~~-l~~p~Gi~~~~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LY 138 (367)
T TIGR02604 63 KSNVFAEE-LSMVTGLAVAVGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLY 138 (367)
T ss_pred eeEEeecC-CCCccceeEecCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEE
Confidence 34556555 7889999999998 99987 44699884 22 34444321 12266 99999999999
Q ss_pred EEeCC--------------------CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccc
Q 017371 133 ICDNA--------------------NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCL 190 (372)
Q Consensus 133 v~~~~--------------------~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~ 190 (372)
++... .+++++++++ .+.++. .++.+++++++++|++|++|.... ......
T Consensus 139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i~ 211 (367)
T TIGR02604 139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRVT 211 (367)
T ss_pred EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEEc
Confidence 97652 2488888555 555532 256889999999999999986421 000000
Q ss_pred ccccccCCCeEE-----EEeCCCC---eE-------------EE--EeCCccCcceEEEec-------CCCEEEEEeCCC
Q 017371 191 DILEGKPHGQLL-----KYDPSSN---IT-------------TL--VADGFYFANGVALSR-------DEDYVVVCESWK 240 (372)
Q Consensus 191 ~~~~~~~~g~v~-----~~d~~t~---~~-------------~~--~~~~~~~~~gi~~~~-------dg~~l~v~~~~~ 240 (372)
.+.++...|-.+ ..++..+ +. .. .......|.|+++.. -.+.+++++...
T Consensus 212 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~ 291 (367)
T TIGR02604 212 PVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHG 291 (367)
T ss_pred ccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccC
Confidence 000000000000 0000000 00 00 011123578888763 334589999999
Q ss_pred CeEEEEEcc--CCCCc-ceeeeccCCC--CCCceeEEcCCCCEEEEEec
Q 017371 241 FRCRKYWLK--GERKG-KLETFAENLP--GAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 241 ~~i~~~~~~--g~~~~-~~~~~~~~~~--g~p~~i~~d~~G~lwva~~~ 284 (372)
.+|+++.++ +.... +.+.|..... +.|..+.+++||.|||+++.
T Consensus 292 ~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~ 340 (367)
T TIGR02604 292 QLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY 340 (367)
T ss_pred CEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence 999999886 32111 1122332211 47889999999999999965
No 20
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.28 E-value=9.2e-10 Score=100.20 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=120.8
Q ss_pred CeEEcCCCCEEEEeCCC-------------cEEEEc-CCC--cEEEeeec-CCcccccccceEEccC------CcEEEEe
Q 017371 122 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFLSYV-NGSKLRFANDVVEASD------GSLYFTV 178 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~-------------gv~~~~-~~g--~~~l~~~~-~~~~~~~~~~l~~d~d------G~i~vtd 178 (372)
++.+|+.|+|||.|.+. .|+.+| .++ ++.+.-.. ...+..+.+++++|.. +.+|++|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78888889999988653 488888 555 34332211 1123457889999862 5799999
Q ss_pred CCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--------------------cceEEEec---CCCEEEE
Q 017371 179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--------------------ANGVALSR---DEDYVVV 235 (372)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--------------------~~gi~~~~---dg~~l~v 235 (372)
++ .++|..||..+++...+...... ..|+++++ |+++||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 84 45788888888777666543211 24677765 8889999
Q ss_pred EeCCCCeEEEEEcc---CCCCcc-------eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371 236 CESWKFRCRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 305 (372)
Q Consensus 236 ~~~~~~~i~~~~~~---g~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~ 305 (372)
.-..+.+++++..+ .+.... .+.+. ..++..+++++|++|+||++...
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~--------------------- 205 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE--------------------- 205 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC---------------------
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC---------------------
Confidence 99888889998753 222211 12222 12234689999999999999988
Q ss_pred cCccccccccCCCceEEEEECCCC-----cEEEEEECCCCCeeccceeeEEEC---CEEEEEeCCC
Q 017371 306 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTS 363 (372)
Q Consensus 306 ~p~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~~ 363 (372)
.+.|.+.++++ +.....+++. .+.++.++..++ |.||+-+.+-
T Consensus 206 -------------~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 206 -------------QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp -------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred -------------CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEECcc
Confidence 57899999998 4444556554 267888898876 9999988654
No 21
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=2e-08 Score=90.17 Aligned_cols=241 Identities=16% Similarity=0.224 Sum_probs=151.6
Q ss_pred CCCCccEEEcCCC-cEEEEe-c--CCeEEEEe----CCceEEEEe---cCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-
Q 017371 78 VNHPEDASMDKNG-VIYTAT-R--DGWIKRLQ----DGTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNANGLHKVS- 144 (372)
Q Consensus 78 ~~~p~~i~~d~~G-~l~v~~-~--~g~i~~~~----~g~~~~~~~---~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~- 144 (372)
+..|.-|++++++ .||++. . .|+|..|. +|+.+.+.. .+..|. -+++|++|+ |++++...|-+.+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 5689999999888 899987 3 57775554 477665532 333446 899999996 56666555543333
Q ss_pred --CCC-cEEE----eeecCCc--c--cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE
Q 017371 145 --EDG-VENF----LSYVNGS--K--LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (372)
Q Consensus 145 --~~g-~~~l----~~~~~~~--~--~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~ 212 (372)
.+| +... .....++ + ...+....++|+|+ +++.|- +..+|+.|+.+.|+.+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----------------G~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----------------GTDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----------------CCceEEEEEcccCccc
Confidence 567 3222 2221211 1 12245677899995 555443 5668888887767665
Q ss_pred EEe----CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec--cCCC----C--CCceeEEcCCCC-EE
Q 017371 213 LVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLP----G--APDNINLAPDGT-FW 279 (372)
Q Consensus 213 ~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~----g--~p~~i~~d~~G~-lw 279 (372)
... .....|.-|+|+|++++.|+..-.++.|..+..++. .++.+... ..+| | .-..|.+++||+ ||
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 532 334567889999999999999888889888887653 23332221 1122 1 123488999997 55
Q ss_pred EEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEE-CC-CCCeeccceeeEE--ECCE
Q 017371 280 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV-DP-TGQLMSFVTSGLQ--VDNH 355 (372)
Q Consensus 280 va~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~-~~-~g~~~~~~t~~~~--~~g~ 355 (372)
+++.. -+.-.++++|++|..+.... .+ .|. .+-.+.+ .++.
T Consensus 260 asNRg--------------------------------~dsI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~ 304 (346)
T COG2706 260 ASNRG--------------------------------HDSIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRF 304 (346)
T ss_pred EecCC--------------------------------CCeEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCE
Confidence 55543 11346888898866554332 22 232 2333444 3578
Q ss_pred EEEEeCCCCeEEEEeCC
Q 017371 356 LYVISLTSNFIGKVQLS 372 (372)
Q Consensus 356 L~igs~~~~~i~~~~~~ 372 (372)
|+.++-+++.|.++..|
T Consensus 305 Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 305 LIAANQKSDNITVFERD 321 (346)
T ss_pred EEEEccCCCcEEEEEEc
Confidence 99999999999988754
No 22
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.25 E-value=2.6e-08 Score=95.12 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=115.6
Q ss_pred CceEecCCCCCCCccEEEcCCCcEEEEec-CCeEEEEe-C-CceEEE------Ee--cCCCcccCeEEcCC-------CC
Q 017371 69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ-D-GTWVNW------KF--IDSQTLVGLTSTKE-------GH 130 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~-g~~~~~------~~--~~~~p~~gl~~d~d-------G~ 130 (372)
+++++.+| +..|.+|++.++|++|++.. .|+|++++ + +..+.. .. ..+..+ ||+++|+ +.
T Consensus 21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 46677777 89999999999999999997 69999998 3 332221 11 234567 9999866 35
Q ss_pred EEEEeC----------CCcEEEEc-C-C-C----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCC--cccc--
Q 017371 131 LIICDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP--HEYC-- 189 (372)
Q Consensus 131 l~v~~~----------~~gv~~~~-~-~-g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~--~~~~-- 189 (372)
|||+-+ ...|.++. . + . .+.+....+....|.-..|++++||+|||+....-... ..+.
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 888741 23577765 2 2 1 33444444443456667899999999999865421100 0000
Q ss_pred --cc------c---ccccCCCeEEEEeCCCC-----------eEEEEeCCccCcceEEEecCCCEEEEEeCCC---CeEE
Q 017371 190 --LD------I---LEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWK---FRCR 244 (372)
Q Consensus 190 --~~------~---~~~~~~g~v~~~d~~t~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~---~~i~ 244 (372)
.. . ......|.|+|+|++.. ..++++.++.+|.|++|+|+|+ ||+++.+. ..|.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN 257 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELN 257 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEE
Confidence 00 0 11234689999998732 2467888999999999999765 99998655 3455
Q ss_pred EEE
Q 017371 245 KYW 247 (372)
Q Consensus 245 ~~~ 247 (372)
++.
T Consensus 258 ~I~ 260 (454)
T TIGR03606 258 IIV 260 (454)
T ss_pred Eec
Confidence 543
No 23
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.8e-08 Score=95.98 Aligned_cols=237 Identities=15% Similarity=0.162 Sum_probs=158.1
Q ss_pred CCccEEEcCCC-cEEEEec-CCeEEEEe--CCceEEEEecC-CCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCCcEEE
Q 017371 80 HPEDASMDKNG-VIYTATR-DGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDGVENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~-~g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g~~~l 151 (372)
.|..++++++| .+|+.+. ...+..++ ....+.+...+ ..|. ++++.++|+ +|+.+.. ..+..++ ... +.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence 89999999988 8999883 33456565 23333333333 6788 999998886 9999755 5688887 322 111
Q ss_pred eeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg 230 (372)
.....| ..|.+++++++| .+|+++.. ..++.+..+|..+++..........|-+++++|+|
T Consensus 110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g 171 (381)
T COG3391 110 GSIPVG---LGPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG 171 (381)
T ss_pred eEeeec---cCCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence 111122 278899999988 89999863 13678999999887766554333467899999999
Q ss_pred CEEEEEeCCCCeEEEEEccCCCCcceeee--ccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371 231 DYVVVCESWKFRCRKYWLKGERKGKLETF--AENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYP 307 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p 307 (372)
+.+|+++...++|..++.++....+ ... .-.....|.++.++++|+ +|++....
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---------------------- 228 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---------------------- 228 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC----------------------
Confidence 9999999989999999976643332 110 112234699999999996 88888761
Q ss_pred ccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371 308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~ 371 (372)
..+.+.++|...........+.+. . ....+.. ++..+|+.....+.+.+++.
T Consensus 229 ----------~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 229 ----------GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ----------CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 025788888654333332222222 1 2223333 45778888777788877764
No 24
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.6e-08 Score=94.38 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=105.7
Q ss_pred CceEecCCCCCCCccEEEcCCCcEEEEecC-CeEEEEeCCc---------eEEEEe----------------cCCCcccC
Q 017371 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT---------WVNWKF----------------IDSQTLVG 122 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-g~i~~~~~g~---------~~~~~~----------------~~~~p~~g 122 (372)
..+.+..| +..|..++..++|.+.+.... |++..+.+|. ...+.. ....+. +
T Consensus 58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~ 135 (399)
T COG2133 58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G 135 (399)
T ss_pred eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence 45566677 899999999999966666544 7777665221 111111 112233 4
Q ss_pred eEEcCCCCEEEEeCCCcEEEEc-CCC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc---
Q 017371 123 LTSTKEGHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE--- 194 (372)
Q Consensus 123 l~~d~dG~l~v~~~~~gv~~~~-~~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~--- 194 (372)
++.- .+.+|+++. .++.+++ .+. ...+....++...++-..|++++||+||++.-+..............
T Consensus 136 ~a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 136 ISEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred EEee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence 4443 455666653 3466666 222 34455555655578888999999999999976531110000111111
Q ss_pred -ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeE
Q 017371 195 -GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 243 (372)
Q Consensus 195 -~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i 243 (372)
......++..|+.+...+++..++.+|+|++|+|..+.||+++.+.+.+
T Consensus 214 ~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 214 LRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred eeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 1123345566777677788899999999999999966799999877444
No 25
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.16 E-value=1.1e-07 Score=86.94 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=102.7
Q ss_pred CcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-c-EEEeeecCCcccc
Q 017371 90 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLR 161 (372)
Q Consensus 90 G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~-~~l~~~~~~~~~~ 161 (372)
+.+|++. .+|.|..++ +++..........+. +++++++|+ +|++... ..+..++ .++ . ..+.. + .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~ 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G---P 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C---C
Confidence 3567666 688899998 555433334445678 999999997 5666544 4577778 555 3 22211 1 2
Q ss_pred cccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371 162 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 162 ~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
.+..++++++|+ +|++.. ..+.|..+|..+++..........+.+++++|||+.++++....
T Consensus 74 ~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 74 DPELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred CccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence 345788999986 555532 35689999987665433333334578999999999877776544
Q ss_pred CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE-EEEE
Q 017371 241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAI 282 (372)
Q Consensus 241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wva~ 282 (372)
..+..++..+.+. ..... ....|..+.++++|.. |++.
T Consensus 137 ~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 137 NMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred CeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence 5566666543211 11111 2234778899999974 4554
No 26
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3.9e-09 Score=96.53 Aligned_cols=145 Identities=19% Similarity=0.358 Sum_probs=103.1
Q ss_pred CCCCCccEEEcCCCcEEEEecC------------CeEEEEe-CCceEEEEec-CCCcccCeEEcCCC-CEEEEeCC-CcE
Q 017371 77 SVNHPEDASMDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NGL 140 (372)
Q Consensus 77 ~~~~p~~i~~d~~G~l~v~~~~------------g~i~~~~-~g~~~~~~~~-~~~p~~gl~~d~dG-~l~v~~~~-~gv 140 (372)
+...|....++++|.+|+++.. |.|||++ .|..+..... ...|+ ||+++||| .||++|+. +.+
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence 4578999999999999999844 6799999 7766655544 67889 99999999 79999987 568
Q ss_pred EEEc-C--CC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371 141 HKVS-E--DG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 213 (372)
Q Consensus 141 ~~~~-~--~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~ 213 (372)
++++ . ++ ....... .. .-..|.++++|.+|+||++... ..++|.+++|+......
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~-~~-~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDF-DE-EPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGE 249 (307)
T ss_pred EEEecCcccCccCCcceEEEc-cC-CCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEE
Confidence 8887 3 23 1111111 11 1247899999999999974221 22489999999444444
Q ss_pred EeCCccCcceEEEe-cCCCEEEEEeCCC
Q 017371 214 VADGFYFANGVALS-RDEDYVVVCESWK 240 (372)
Q Consensus 214 ~~~~~~~~~gi~~~-~dg~~l~v~~~~~ 240 (372)
+.-....+..++|- ++.+.|||+....
T Consensus 250 i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 250 IKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EECCCCCCccceEeCCCcCEEEEEecCC
Confidence 44443566667764 5678999988755
No 27
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.5e-08 Score=92.57 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=128.9
Q ss_pred CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC---CcEEEEcCCCcEE
Q 017371 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---NGLHKVSEDGVEN 150 (372)
Q Consensus 79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~---~gv~~~~~~g~~~ 150 (372)
..|.++++.+.|. +|+.+ ..+.|..++ ..+.......+..|. +++++++| .+||++.. .-+..+|......
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 6899999998885 99998 457899998 334444444555899 99999988 79999883 4477788433111
Q ss_pred EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-----EeCCccCcceE
Q 017371 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGV 224 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-----~~~~~~~~~gi 224 (372)
+.....|. .|.+++++++|+ +|+++. ..++|..+|.++..+.. .......|.++
T Consensus 153 ~~~~~vG~---~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i 212 (381)
T COG3391 153 TATIPVGN---TPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI 212 (381)
T ss_pred EEEEecCC---CcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCceE
Confidence 11122221 457999999996 999875 57789999987655543 23446778999
Q ss_pred EEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371 225 ALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 225 ~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~ 284 (372)
++++||+.+|+.+..+ ..+.+++.............. .. .|.++.++++|. +|++...
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecC
Confidence 9999999999999887 589999876543322212221 22 589999999996 5555433
No 28
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.09 E-value=1.2e-08 Score=103.90 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=153.0
Q ss_pred CCCCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEecC----CCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CC--
Q 017371 77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID----SQTLVGLTSTK-EGHLIICDNA-NGLHKVS-ED-- 146 (372)
Q Consensus 77 ~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~----~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~-- 146 (372)
.+..|..+|..+||.||+|+.+ .|.|+- +|.+..+.... .+.+ -||++| ||.|||.+.. +.|+++. -.
T Consensus 363 ~L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~ 440 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ 440 (1899)
T ss_pred eeeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCcc
Confidence 3667889999999999999865 588888 88877765432 2345 688986 7999999876 5688876 11
Q ss_pred ---C-cEEEeee----c-------C-----CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371 147 ---G-VENFLSY----V-------N-----GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (372)
Q Consensus 147 ---g-~~~l~~~----~-------~-----~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 206 (372)
+ .++++.. . + ...+.+|.+|++|++|.+||+|.. +|.++|.
T Consensus 441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~ 501 (1899)
T KOG4659|consen 441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDT 501 (1899)
T ss_pred ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEecc
Confidence 2 4555421 0 1 124679999999999999998763 3555553
Q ss_pred CCCeEEEEe--------------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC---Ccce-------
Q 017371 207 SSNITTLVA--------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER---KGKL------- 256 (372)
Q Consensus 207 ~t~~~~~~~--------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~---~~~~------- 256 (372)
. |-+..+. -.+..|..++++|=.+.|||.++ +-|++++.++.. ++..
T Consensus 502 ~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~ 578 (1899)
T KOG4659|consen 502 T-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLAN 578 (1899)
T ss_pred C-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCC
Confidence 2 3333321 12566889999996667999985 457777765421 0110
Q ss_pred -eee----ccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCc
Q 017371 257 -ETF----AEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT 330 (372)
Q Consensus 257 -~~~----~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~ 330 (372)
..+ ..+ .--.+..|++..+|-|||+....| +-+.|.++..+|+
T Consensus 579 ~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r-------------------------------riNrvr~~~tdg~ 627 (1899)
T KOG4659|consen 579 ATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR-------------------------------RINRVRKLSTDGT 627 (1899)
T ss_pred CchhhhhhhhhhhhhhhhceeecCCceEEEEeccch-------------------------------hhhheEEeccCce
Confidence 000 000 001367899999999999998731 2234555566664
Q ss_pred EEEEE-----------------ECCC----CCeeccceeeEEE-CCEEEEEeCCCCeEEEE
Q 017371 331 IIRNL-----------------VDPT----GQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 369 (372)
Q Consensus 331 ~~~~~-----------------~~~~----g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~ 369 (372)
+.-.- ...+ ...++.+++++.. +|++||++..+-+|..+
T Consensus 628 i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 628 ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 32111 0100 1235567777776 78999999888777543
No 29
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.09 E-value=6.2e-08 Score=98.86 Aligned_cols=193 Identities=17% Similarity=0.247 Sum_probs=127.8
Q ss_pred cEEEcC-CCcEEEEe-cCCeEEEEe--C-----CceEEEEe----------cC-----------CCcccCeEEcCCCCEE
Q 017371 83 DASMDK-NGVIYTAT-RDGWIKRLQ--D-----GTWVNWKF----------ID-----------SQTLVGLTSTKEGHLI 132 (372)
Q Consensus 83 ~i~~d~-~G~l~v~~-~~g~i~~~~--~-----g~~~~~~~----------~~-----------~~p~~gl~~d~dG~l~ 132 (372)
.||++| +|.||+++ ...+|+|+. . +.++.++. .| ..|- ||++|++|.||
T Consensus 411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lY 489 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLY 489 (1899)
T ss_pred EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEE
Confidence 499997 99999999 567899986 1 23444321 12 2478 99999999999
Q ss_pred EEeCCCcEEEEcCCC-cEEEeeec---------------CCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccc
Q 017371 133 ICDNANGLHKVSEDG-VENFLSYV---------------NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEG 195 (372)
Q Consensus 133 v~~~~~gv~~~~~~g-~~~l~~~~---------------~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~ 195 (372)
.+|. ..+.++|.+| +..+.... ....+..|.+++++| |+.+||-|.
T Consensus 490 faD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~---------------- 552 (1899)
T KOG4659|consen 490 FADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT---------------- 552 (1899)
T ss_pred Eecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec----------------
Confidence 9986 4699999888 66554211 123467888999998 789999754
Q ss_pred cCCCeEEEEeCCCCeEEEEe---------------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEE---ccCC
Q 017371 196 KPHGQLLKYDPSSNITTLVA---------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYW---LKGE 251 (372)
Q Consensus 196 ~~~g~v~~~d~~t~~~~~~~---------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~---~~g~ 251 (372)
+-|+++++. +.+.+++ ..+..+..|+++++|- |||+++...+|-++. -+|.
T Consensus 553 ---nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~ 627 (1899)
T KOG4659|consen 553 ---NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGT 627 (1899)
T ss_pred ---ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCce
Confidence 346666654 4444332 1133467899999996 999999776555543 3331
Q ss_pred ------CCcce--------eeec------c-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371 252 ------RKGKL--------ETFA------E-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 309 (372)
Q Consensus 252 ------~~~~~--------~~~~------~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~ 309 (372)
..+.. ..|. . ..-.-|..+++.+||.++||+.+ +-.+|++..+.|..
T Consensus 628 i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g-----------N~rIr~Vs~~~~~~ 695 (1899)
T KOG4659|consen 628 ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG-----------NSRIRKVSARMAKY 695 (1899)
T ss_pred EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC-----------chhhhhhhhccccc
Confidence 00100 0110 0 01123778999999999999987 34678887776653
No 30
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.08 E-value=3.8e-09 Score=99.93 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=88.9
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCC-CcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeee
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY 154 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~ 154 (372)
....+.+|.+|.+|+|+.+| +++|+ .|+.-....... .++..+..|..|+|||++ ..|++..++.| .....
T Consensus 166 ~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~-- 241 (671)
T COG3292 166 PVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG-- 241 (671)
T ss_pred cceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence 34458899999999999888 99999 555444333222 233277888899999997 47999999656 33222
Q ss_pred cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe----CCccCcceEEEecCC
Q 017371 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DGFYFANGVALSRDE 230 (372)
Q Consensus 155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~----~~~~~~~gi~~~~dg 230 (372)
+..+...+.-+..|.+|++||+.. .++.++....+.+.... .+....|++-.+.||
T Consensus 242 -~~lp~~~I~ll~qD~qG~lWiGTe-------------------nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG 301 (671)
T COG3292 242 -PMLPSGNILLLVQDAQGELWIGTE-------------------NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG 301 (671)
T ss_pred -CCCcchheeeeecccCCCEEEeec-------------------ccceeEecCCCCccccccccCCccccccceeeccCC
Confidence 222234556778899999999743 23555544333332211 112233667777788
Q ss_pred CEEEEEeCCCCeEEEEE
Q 017371 231 DYVVVCESWKFRCRKYW 247 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~ 247 (372)
+ ||+... +++++|.
T Consensus 302 s-LWv~t~--~giv~~~ 315 (671)
T COG3292 302 S-LWVGTY--GGIVRYL 315 (671)
T ss_pred C-Eeeecc--CceEEEe
Confidence 6 887654 3466654
No 31
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=6.4e-07 Score=83.22 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=135.2
Q ss_pred CcEEEEecC-----CeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeC---------C-CcEEEEc-CCC--c
Q 017371 90 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN---------A-NGLHKVS-EDG--V 148 (372)
Q Consensus 90 G~l~v~~~~-----g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~---------~-~gv~~~~-~~g--~ 148 (372)
.++|+.+.. |+|+.+| ++++......+.+|. ++ +.+|| .|||+.. . ..|..+| .++ .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 357777743 8899999 566555556778899 86 99998 5999987 3 3467777 454 3
Q ss_pred EEEeeecCCc---ccccccceEEccCCc-EEEEeCCCC-----CC-----------Ccccccccccc-------cCCCeE
Q 017371 149 ENFLSYVNGS---KLRFANDVVEASDGS-LYFTVSSSK-----YL-----------PHEYCLDILEG-------KPHGQL 201 (372)
Q Consensus 149 ~~l~~~~~~~---~~~~~~~l~~d~dG~-i~vtd~~~~-----~~-----------~~~~~~~~~~~-------~~~g~v 201 (372)
..+... +.+ -...++.+++.+||+ +|+++.+.. .+ ..++...+... ..+|+.
T Consensus 91 ~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 91 ADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred eEEccC-CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 323221 111 134667899999995 888874411 00 00111111111 122222
Q ss_pred EEEeCC-CCeEEE----EeCC---ccCcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeee---ccCC--CC-C
Q 017371 202 LKYDPS-SNITTL----VADG---FYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETF---AENL--PG-A 266 (372)
Q Consensus 202 ~~~d~~-t~~~~~----~~~~---~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~--~g-~ 266 (372)
..+..+ +|+... +... .-+.+. .+.+ ||+.+|++.. +.|+.+++.+........+ .... .+ .
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccC
Confidence 222111 122111 1111 001112 4455 8888888765 6799999766433322222 1111 12 4
Q ss_pred Cce---eEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCC
Q 017371 267 PDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ 341 (372)
Q Consensus 267 p~~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~ 341 (372)
|.+ ++++++| ++||+..... .. -+ ..+.+.|..+|. .++++..+.. |.
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~-~~---th---------------------k~~~~~V~ViD~~t~kvi~~i~v--G~ 299 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRA-KW---TH---------------------KTASRFLFVVDAKTGKRLRKIEL--GH 299 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCc-cc---cc---------------------cCCCCEEEEEECCCCeEEEEEeC--CC
Confidence 555 9999887 7999654310 00 00 122357888885 4777776665 32
Q ss_pred eeccceeeEE--ECC-EEEEEeCCCCeEEEEeC
Q 017371 342 LMSFVTSGLQ--VDN-HLYVISLTSNFIGKVQL 371 (372)
Q Consensus 342 ~~~~~t~~~~--~~g-~L~igs~~~~~i~~~~~ 371 (372)
.+..+.. ++. .||..+-.++.|.++|.
T Consensus 300 ---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 300 ---EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred ---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 2445555 456 78888888898999985
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.91 E-value=3.7e-07 Score=86.26 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=98.1
Q ss_pred ceEecCCCCCC-CccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEE
Q 017371 70 FIKVGEGSVNH-PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKV 143 (372)
Q Consensus 70 ~~~~~~g~~~~-p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~ 143 (372)
+.++..|. . +.++++.+|| .+|+++.+|.|..+| ++++..-...+..|. |+++++||+ +|+++.. ..+..+
T Consensus 29 ~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 29 VARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEe
Confidence 44555442 3 3457788888 599999999999999 565544456677899 999999997 5666543 568888
Q ss_pred c-CCC--cEEEeee-cCC-cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-E-EEEeC
Q 017371 144 S-EDG--VENFLSY-VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-T-TLVAD 216 (372)
Q Consensus 144 ~-~~g--~~~l~~~-~~~-~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~-~~~~~ 216 (372)
| ++. +..+... .+. .....+.+|...+....|+.. ....+.|+.+|....+ . .....
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~----------------lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN----------------LKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE----------------ETTTTEEEEEETTTSSCEEEEEEE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEE----------------EccCCeEEEEEeccccccceeeec
Confidence 8 444 4444321 111 111234466666777766643 2256789999865432 1 12233
Q ss_pred CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.-.+|....+++++++++++....+.|..++...
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred ccccccccccCcccceeeecccccceeEEEeecc
Confidence 4467888999999999999877778888888654
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=9e-07 Score=78.40 Aligned_cols=191 Identities=12% Similarity=0.140 Sum_probs=106.4
Q ss_pred CCCCCCccEEEcCC-CcEEEEe-cCCeEEEEe-CCce-EEEEec-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc--CCC
Q 017371 76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTW-VNWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~-G~l~v~~-~~g~i~~~~-~g~~-~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~--~~g 147 (372)
|....+.+|+++++ ++||+.. ..+.|+.++ +|++ +.+... .+.+- ||+.-.+|.+.+++.. +.++.++ .++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 44556999999985 6798776 788999999 7764 344333 35677 9999888877777654 4566666 222
Q ss_pred --c-----EEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeC--CCCeEEEEe--
Q 017371 148 --V-----ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA-- 215 (372)
Q Consensus 148 --~-----~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~t~~~~~~~-- 215 (372)
. +.+.............+|+.|+. +++|+... ....+||.++. .........
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----------------~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----------------RKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE----------------SSSEEEEEEESTT-SS--EEEE-H
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC----------------CCChhhEEEccccCccceeecccc
Confidence 1 11211222223345679999986 57777532 12346777775 222222211
Q ss_pred ------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC------CCCCCceeEEcCCCCEEEEEe
Q 017371 216 ------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 216 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwva~~ 283 (372)
.....+.+++++|..+.||+......+|..++.+|...+.. .+... .-..|.||++|++|+|||++-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 12345789999999999999999899999999776522221 11111 112589999999999999985
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
.
T Consensus 241 p 241 (248)
T PF06977_consen 241 P 241 (248)
T ss_dssp T
T ss_pred C
Confidence 4
No 34
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.80 E-value=4e-08 Score=93.13 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-c-cCcceEEEecCCCEEEEEeC
Q 017371 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~-~~~~gi~~~~dg~~l~v~~~ 238 (372)
.....+.+|..|++|++. ..++++||+.+++.-..... + ..-+.+..+..|+ |||...
T Consensus 165 ~~V~aLv~D~~g~lWvgT-------------------~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd 224 (671)
T COG3292 165 TPVVALVFDANGRLWVGT-------------------PDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD 224 (671)
T ss_pred ccceeeeeeccCcEEEec-------------------CCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec
Confidence 456689999999999963 34699999988876554432 2 2234455666665 888754
Q ss_pred CCCeEEEEEccCCCCcceeeeccCCCCCCce----eEEcCCCCEEEEEec
Q 017371 239 WKFRCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIK 284 (372)
Q Consensus 239 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~----i~~d~~G~lwva~~~ 284 (372)
..++.+...|..... ..+.+|++ +..|.+|++|+++..
T Consensus 225 --qGv~~~e~~G~~~sn------~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 225 --QGVYLQEAEGWRASN------WGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred --cceEEEchhhccccc------cCCCCcchheeeeecccCCCEEEeecc
Confidence 458888876632222 12233444 567999999999976
No 35
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.77 E-value=6.9e-07 Score=87.86 Aligned_cols=217 Identities=17% Similarity=0.181 Sum_probs=142.1
Q ss_pred cEEEEecCCeEEEEe-CCc------eEE-EEecCCCcccCeEEc-CCCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCc
Q 017371 91 VIYTATRDGWIKRLQ-DGT------WVN-WKFIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGS 158 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~-~g~------~~~-~~~~~~~p~~gl~~d-~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~ 158 (372)
.|.++ ..+.|.+.. +|. .+. +.-+...+. ||.|| .+-.+|++|.. +.|.+-.-+| .+.+...
T Consensus 992 ~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~---- 1065 (1289)
T KOG1214|consen 992 FLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS---- 1065 (1289)
T ss_pred eEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeecc----
Confidence 34444 456677766 331 122 333445677 99999 66678888754 4455555334 4433322
Q ss_pred ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEe
Q 017371 159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 237 (372)
Q Consensus 159 ~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~ 237 (372)
.+.+|.+||+|.-+ ++|.+|+.. ..-.+..+|.+ .+...+.++|.+|.+|++++-++.|||++
T Consensus 1066 ~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred cCCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeecc
Confidence 24578999999766 799998731 12235666653 22233567899999999999988999999
Q ss_pred CCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC--EEEEEecCchhHHHHhhcchhHHHHHHhcCcccccc
Q 017371 238 SWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 313 (372)
Q Consensus 238 ~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~ 313 (372)
+.+ -.|.+.+++|. +..+++...-++|+|+.+|+... -||-. +
T Consensus 1130 WnRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDA-G----------------------------- 1176 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDA-G----------------------------- 1176 (1289)
T ss_pred ccccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEec-C-----------------------------
Confidence 866 46888899884 34566666668899999999875 45533 3
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 314 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 314 ~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
..++.++.++|.--++... + +..+-++.-.++++|..+++.|.|.-+++
T Consensus 1177 -----t~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1177 -----TKRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -----CcceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 3467777777643333221 2 34555666666679999998888877653
No 36
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.74 E-value=4e-05 Score=73.06 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=119.1
Q ss_pred cEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcc
Q 017371 83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSK 159 (372)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~ 159 (372)
+.+++ ++.+|+++.+|.|+.+| +|+...-....+....+.+.+ ++.+|+++....++.+| .+|...+.....+..
T Consensus 60 ~p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 60 QPAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred ceEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence 34444 67999999999999999 676432222222222245554 67899987666699999 678333322222221
Q ss_pred cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc------ceEEEecCCCEE
Q 017371 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA------NGVALSRDEDYV 233 (372)
Q Consensus 160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~------~gi~~~~dg~~l 233 (372)
.. ...+ .++.+|+.. ..+.|+.+|+++|+..+.......+ ....+. + +.+
T Consensus 138 ~~---~p~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v 193 (377)
T TIGR03300 138 LS---PPLV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV 193 (377)
T ss_pred ec---CCEE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence 11 1122 356777742 4578999999888876543221110 111222 3 346
Q ss_pred EEEeCCCCeEEEEEccCCCCcceeeeccCCCCC---------CceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371 234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGA---------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 304 (372)
Q Consensus 234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~---------p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~ 304 (372)
|+.. .+.+++.+++.+.+..-...+. ...+. .....+ .++.+|+++..
T Consensus 194 ~~~~-~~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-------------------- 250 (377)
T TIGR03300 194 LVGF-AGGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-------------------- 250 (377)
T ss_pred EEEC-CCCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------
Confidence 5544 4567888887543211100110 00000 001112 25678887654
Q ss_pred hcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 305 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 305 ~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
+.++++|. +|+.+..... + ........++++|+++. ...|..++.
T Consensus 251 ---------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~~~~~~vyv~~~-~G~l~~~d~ 296 (377)
T TIGR03300 251 ---------------GRVAALDLRSGRVLWKRDA--S----SYQGPAVDDNRLYVTDA-DGVVVALDR 296 (377)
T ss_pred ---------------CEEEEEECCCCcEEEeecc--C----CccCceEeCCEEEEECC-CCeEEEEEC
Confidence 57888885 6887765542 1 12334456788998874 345666554
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.74 E-value=2.1e-05 Score=69.99 Aligned_cols=222 Identities=17% Similarity=0.173 Sum_probs=136.2
Q ss_pred ccEEEcCCC-cEEEEecCCeEEEEe-C-C-ceEEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCC--cEEEee
Q 017371 82 EDASMDKNG-VIYTATRDGWIKRLQ-D-G-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLS 153 (372)
Q Consensus 82 ~~i~~d~~G-~l~v~~~~g~i~~~~-~-g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g--~~~l~~ 153 (372)
..+.+.+++ .++++..+|.|..++ . + ....+........ .+.+.++++++++.. ...+..++ .++ ...+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 132 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR- 132 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence 367777777 677777899999998 3 3 3344443333456 889998888887766 44577777 444 22222
Q ss_pred ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCE
Q 017371 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDY 232 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~ 232 (372)
. ....+..+.+.+++.++++.. .++.|..+|..+++....... ......++++++++.
T Consensus 133 ~----~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 133 G----HTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred c----CCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 1 112466888988887776532 356788888865554333322 224567899999987
Q ss_pred EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371 233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 312 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~ 312 (372)
++++.. ++.|..|++...+. ...+. ...+....+.+++++.++++...
T Consensus 192 l~~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~---------------------------- 239 (289)
T cd00200 192 LLSSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGSE---------------------------- 239 (289)
T ss_pred EEEecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEcC----------------------------
Confidence 777765 66788888764211 11121 12234677889998888887763
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEEC--CEEEEEeCCCCeEEEE
Q 017371 313 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD--NHLYVISLTSNFIGKV 369 (372)
Q Consensus 313 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~--g~L~igs~~~~~i~~~ 369 (372)
.+.+..++.+ ++....+....+ .+.++.... ..|+.++ ....|.++
T Consensus 240 ------~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~-~d~~i~iw 288 (289)
T cd00200 240 ------DGTIRVWDLRTGECVQTLSGHTN----SVTSLAWSPDGKRLASGS-ADGTIRIW 288 (289)
T ss_pred ------CCcEEEEEcCCceeEEEccccCC----cEEEEEECCCCCEEEEec-CCCeEEec
Confidence 3466666644 666666653322 366666653 4555555 44455543
No 38
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=79.11 Aligned_cols=168 Identities=23% Similarity=0.311 Sum_probs=105.1
Q ss_pred ceEecCCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCC
Q 017371 70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSED 146 (372)
Q Consensus 70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~ 146 (372)
...++...+.+||.+.+|+.| --|++-.+|++..|. +..+..+......+. .-..++. ..++
T Consensus 45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~---------~~~~~~~----~~~~-- 109 (376)
T KOG1520|consen 45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTN---------RSQCCDP----GSFE-- 109 (376)
T ss_pred cccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccccc---------ccccCCC----ccee--
Confidence 334444457899999999755 678888888888886 223333322210000 0001100 0000
Q ss_pred CcEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-----CccC
Q 017371 147 GVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYF 220 (372)
Q Consensus 147 g~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-----~~~~ 220 (372)
....-..|-+|+++..| ++||+|+- =+|+.++++++..+.+.+ .+.+
T Consensus 110 ---------~e~~CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf 162 (376)
T KOG1520|consen 110 ---------TEPLCGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKF 162 (376)
T ss_pred ---------cccccCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeee
Confidence 01112356699999877 99999862 369999999877666543 2567
Q ss_pred cceEEEecCCCEEEEEeCCC-----------------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 221 ANGVALSRDEDYVVVCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 221 ~~gi~~~~dg~~l~v~~~~~-----------------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
.|++.++++| .+|++|+.. +|+.+||..+ ...+++.+++. +|+|+++.+|+.+.+.+-
T Consensus 163 ~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 163 LNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEe
Confidence 8999999955 599998743 3566666532 33345555553 699999999998666654
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
.
T Consensus 238 t 238 (376)
T KOG1520|consen 238 T 238 (376)
T ss_pred e
Confidence 4
No 39
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.66 E-value=8e-06 Score=78.31 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=98.6
Q ss_pred eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcC-CC-cEEEee---ecCCcccccccceEEccC-------CcEE
Q 017371 109 WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLS---YVNGSKLRFANDVVEASD-------GSLY 175 (372)
Q Consensus 109 ~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~-~g-~~~l~~---~~~~~~~~~~~~l~~d~d-------G~i~ 175 (372)
++.+......|. +|++.+||++||++.. ..|++++. ++ .+.+.. ...........+|+++|+ +.||
T Consensus 22 ~~~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 345556677899 9999999999999863 45888873 34 322211 111111345668888765 4689
Q ss_pred EEeCCCCCCCcccccccccccCCCeEEEEeCCC--C---eEEEEeCCc-----cCcceEEEecCCCEEEEEeCCC-----
Q 017371 176 FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--N---ITTLVADGF-----YFANGVALSRDEDYVVVCESWK----- 240 (372)
Q Consensus 176 vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t--~---~~~~~~~~~-----~~~~gi~~~~dg~~l~v~~~~~----- 240 (372)
++-+...-+ .+.....+|.|+..+. . ..+.+...+ ++-..++|+|||. ||++.-..
T Consensus 101 vsyt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~ 171 (454)
T TIGR03606 101 ISYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG 171 (454)
T ss_pred EEEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc
Confidence 974320000 0000235787775431 1 123343333 3345689999996 88853221
Q ss_pred ---------------------------CeEEEEEccCCCC--------cceeeeccCCCCCCceeEEcCCCCEEEEEecC
Q 017371 241 ---------------------------FRCRKYWLKGERK--------GKLETFAENLPGAPDNINLAPDGTFWIAIIKL 285 (372)
Q Consensus 241 ---------------------------~~i~~~~~~g~~~--------~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~ 285 (372)
..|+|++.+|.-. ...+++.-.+ ..|-++++|++|.||+++.+.
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence 2688888876310 0123443222 348899999999999999875
Q ss_pred c
Q 017371 286 D 286 (372)
Q Consensus 286 ~ 286 (372)
+
T Consensus 251 ~ 251 (454)
T TIGR03606 251 N 251 (454)
T ss_pred C
Confidence 4
No 40
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.61 E-value=7.1e-06 Score=72.39 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=73.2
Q ss_pred CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC---cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g---~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~ 193 (372)
+... ||+.| ...||++|....++.+|+.. ...+.-...+.+....|-|-.- +|.||.-..
T Consensus 130 ~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW-------------- 192 (264)
T PF05096_consen 130 GEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW-------------- 192 (264)
T ss_dssp SS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET--------------
T ss_pred Ccce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC--------------
Confidence 4567 88866 45789988777899998543 3333323455666677777774 788887432
Q ss_pred cccCCCeEEEEeCCCCeEEEEeCC----------------ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 194 EGKPHGQLLKYDPSSNITTLVADG----------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~~~~~~~----------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
.+..|+++||.+|++.-..+- ..--||||++++++.+||+.-.-..++.+.+.
T Consensus 193 ---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 193 ---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp ---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 356899999999998875421 12358999999999999998777788887653
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.60 E-value=7e-05 Score=70.91 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=98.2
Q ss_pred cEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccc
Q 017371 91 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFA 163 (372)
Q Consensus 91 ~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~ 163 (372)
.+|+.. .+|.|..+| +.++......++.+..++.+.+||+ +||++....+..+| .++ +..+. .| ..+
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~ 80 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNP 80 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCc
Confidence 344666 678899999 3443333333344442788899996 88887666688899 555 33332 22 356
Q ss_pred cceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--------cCcceEEEecCCCEEE
Q 017371 164 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDYVV 234 (372)
Q Consensus 164 ~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--------~~~~gi~~~~dg~~l~ 234 (372)
.++++.+||+ +|+++. ..+.+..+|.+|.+........ ....++.-++.+..++
T Consensus 81 ~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp EEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred ceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 7899999996 565543 4568999998876654432211 1223666678887677
Q ss_pred EEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 235 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
++....++|+.++....+.... ... ....+|.+..+|++|+++++..
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred EEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeecc
Confidence 7777778999998765422211 122 2334689999999998765543
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.59 E-value=0.00016 Score=64.30 Aligned_cols=177 Identities=18% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCccEEEcCCC-cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC--cEEE
Q 017371 80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~~l 151 (372)
...++.+.++| .++++..+|.|..++ +++. ........... .+.+.++++ ++++.....+..++ .++ ...+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 45678888876 455566789998888 4432 22222222334 788888885 44444344577777 443 3333
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg 230 (372)
... ...+..+.+.++++++++.. .++.|..+|..+++....... ......+++++++
T Consensus 90 ~~~-----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 90 TGH-----TSYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ecc-----CCcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 211 12456788888888777532 367899999876654443332 2235678899987
Q ss_pred CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 017371 231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 283 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~ 283 (372)
+.++.+ ..++.|..|++...+.. ..+. ...+....+.+.++|+ ++++..
T Consensus 148 ~~l~~~-~~~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 148 TFVASS-SQDGTIKLWDLRTGKCV--ATLT-GHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred CEEEEE-cCCCcEEEEEccccccc--eeEe-cCccccceEEECCCcCEEEEecC
Confidence 755444 44567888887643211 1222 2223467788899984 555443
No 43
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.59 E-value=1.7e-05 Score=70.36 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=108.5
Q ss_pred CcccCeEEcCC-CCEEEEeCC-CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371 118 QTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 118 ~p~~gl~~d~d-G~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~ 193 (372)
.+. ||+++++ +.||..... ..|+.++.+| ++.+. ..+ +.-+.+|+.-.+|.+.+++.
T Consensus 23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~E-------------- 83 (248)
T PF06977_consen 23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEE-------------- 83 (248)
T ss_dssp -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEET--------------
T ss_pred Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEc--------------
Confidence 345 9999986 568876544 4588888777 44332 222 45677899988888888653
Q ss_pred cccCCCeEEEEeC--CCCeE-----EEEeCCcc-----CcceEEEecCCCEEEEEeCCC-CeEEEEEc--cCCCCccee-
Q 017371 194 EGKPHGQLLKYDP--SSNIT-----TLVADGFY-----FANGVALSRDEDYVVVCESWK-FRCRKYWL--KGERKGKLE- 257 (372)
Q Consensus 194 ~~~~~g~v~~~d~--~t~~~-----~~~~~~~~-----~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~--~g~~~~~~~- 257 (372)
..++|+.++. .+... +.+.-++. .-.|+++++.++.||++.-.. .+|+.+.. .+.......
T Consensus 84 ---r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 84 ---RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ---TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred ---CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 3566776654 22211 11221221 235899999988888875433 34666554 111111000
Q ss_pred -eec-c-CCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEE
Q 017371 258 -TFA-E-NLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR 333 (372)
Q Consensus 258 -~~~-~-~~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~ 333 (372)
.+. . ..-.-|.++.+|+. |++||-+.. ..+++++|.+|+++.
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----------------------------------s~~l~~~d~~G~~~~ 206 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----------------------------------SRLLLELDRQGRVVS 206 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETT----------------------------------TTEEEEE-TT--EEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECC----------------------------------CCeEEEECCCCCEEE
Confidence 011 0 01123788999875 579988776 469999999999999
Q ss_pred EEECCCC-----CeeccceeeEEE-CCEEEEEeCCCCeEEEE
Q 017371 334 NLVDPTG-----QLMSFVTSGLQV-DNHLYVISLTSNFIGKV 369 (372)
Q Consensus 334 ~~~~~~g-----~~~~~~t~~~~~-~g~L~igs~~~~~i~~~ 369 (372)
.+....| ..+..+.+++.+ +|+|||.+- -|...++
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 8887765 345678999998 599999995 5666554
No 44
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=8.1e-05 Score=72.35 Aligned_cols=201 Identities=15% Similarity=0.193 Sum_probs=117.7
Q ss_pred cEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEE
Q 017371 83 DASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN 150 (372)
Q Consensus 83 ~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~ 150 (372)
+.++.++|. |++.. ....|+.++ +|+.+.+....+... ..++.+||+ |+++.... .|+.++ .+| .+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 456677884 55554 234688888 566555543333334 778999996 54442222 488888 556 544
Q ss_pred EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d 229 (372)
+... . ......++.+||+ |+++.. ..+...||.+|.++++.+.+..........+++||
T Consensus 287 lt~~-~----~~~~~~~~spDG~~l~f~sd---------------~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 287 LTNH-F----GIDTEPTWAPDGKSIYFTSD---------------RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CccC-C----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 4221 1 1123568889996 555421 01234699999887777665433233446889999
Q ss_pred CCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371 230 EDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 307 (372)
Q Consensus 230 g~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p 307 (372)
|+.++++... ...|+.+++++.+ ...+... .......+.+||+..+....
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~----------------------- 398 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATR----------------------- 398 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEe-----------------------
Confidence 9999887543 2468888876542 2222211 12345678999974333222
Q ss_pred ccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371 308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 340 (372)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 340 (372)
......++.++.+|.....+..+.|
T Consensus 399 --------~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 399 --------EGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred --------cCCceEEEEEECCCCceEEcccCCC
Confidence 0113468888888877666654434
No 45
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.51 E-value=1.2e-05 Score=73.37 Aligned_cols=184 Identities=17% Similarity=0.252 Sum_probs=108.0
Q ss_pred ccEEEcCCCcEEEEecC-------------CeEEEEe--CCc-eEEEEec------CCCcccCeEEcC-C-----CCEEE
Q 017371 82 EDASMDKNGVIYTATRD-------------GWIKRLQ--DGT-WVNWKFI------DSQTLVGLTSTK-E-----GHLII 133 (372)
Q Consensus 82 ~~i~~d~~G~l~v~~~~-------------g~i~~~~--~g~-~~~~~~~------~~~p~~gl~~d~-d-----G~l~v 133 (372)
-.+.+|+.|+||+-|.. -+|+.|| +++ ++++..+ .+... .+++|. + +.+|+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 46889999999998822 2789999 444 3444322 22334 788884 2 46999
Q ss_pred EeCC-CcEEEEc-CCC--cEEEeeec-----------CCcccc---cccceEEcc---CC-cEEEEeCCCCCCCcccccc
Q 017371 134 CDNA-NGLHKVS-EDG--VENFLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLD 191 (372)
Q Consensus 134 ~~~~-~gv~~~~-~~g--~~~l~~~~-----------~~~~~~---~~~~l~~d~---dG-~i~vtd~~~~~~~~~~~~~ 191 (372)
+|.. .|++.+| .+| .+++.... .+..+. ...+++..+ +| .+|+.-.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------------ 150 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------------ 150 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET------------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC------------
Confidence 9987 6899999 777 45443211 111111 133445543 43 4666532
Q ss_pred cccccCCCeEEEEeCC------C-------CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCC-ccee
Q 017371 192 ILEGKPHGQLLKYDPS------S-------NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLE 257 (372)
Q Consensus 192 ~~~~~~~g~v~~~d~~------t-------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~-~~~~ 257 (372)
....+|++..+ . .+++.+.+......|++++++|. +|+++...+.|.+++.+++.. .+.+
T Consensus 151 -----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 151 -----SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp -----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred -----CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence 23356776421 0 12233332224567899999775 999999999999999876422 2333
Q ss_pred eeccCC--CCCCceeEEcC--CCCEEEEEec
Q 017371 258 TFAENL--PGAPDNINLAP--DGTFWIAIIK 284 (372)
Q Consensus 258 ~~~~~~--~g~p~~i~~d~--~G~lwva~~~ 284 (372)
.+.... --+|+++.++. +|.||+.+..
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eeEEcCceeeccceeeeccccCceEEEEECc
Confidence 443322 24899999999 9999999865
No 46
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.50 E-value=4.4e-06 Score=82.37 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=120.6
Q ss_pred CccEEEc-CCCcEEEEec-CCeEEEEe--CCceEEE-EecCCCcccCeEEcCCC-CEEEEeCCC---cEEEEcCCC--cE
Q 017371 81 PEDASMD-KNGVIYTATR-DGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEG-HLIICDNAN---GLHKVSEDG--VE 149 (372)
Q Consensus 81 p~~i~~d-~~G~l~v~~~-~g~i~~~~--~g~~~~~-~~~~~~p~~gl~~d~dG-~l~v~~~~~---gv~~~~~~g--~~ 149 (372)
+-+|.+| .+..+|+++. ...|.+-. .++.+.+ ....+.|- |||+|.-+ ++|++|+.. ++..+ +| .+
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rk 1103 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERK 1103 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeec--CCceee
Confidence 5567777 5667888884 44565555 4455544 45667889 99999655 699998653 23333 45 34
Q ss_pred EEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEe
Q 017371 150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALS 227 (372)
Q Consensus 150 ~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~ 227 (372)
+|... .+-.|.+|++|+ .|+||.+|.. +.+..|=+.+.+....++ +.+.+.-|||+.|+
T Consensus 1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence 44332 123577999997 5799999864 233345555555333333 34678899999999
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
|-.+.|-|++.++.|+.....+|. ++..++ +++ -+|.+|.-+.+. +|-++|.
T Consensus 1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~L-qYPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNL-QYPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred cccceeeEEecCCcceeEecCCCC--cchhhh-hcc-cCceeeeecccc-ceeeccc
Confidence 999999999999999999988764 333333 233 379999888876 8888886
No 47
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=0.00011 Score=71.72 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=116.9
Q ss_pred cEEEcCCCc-EEEEe-cC--CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEE
Q 017371 83 DASMDKNGV-IYTAT-RD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN 150 (372)
Q Consensus 83 ~i~~d~~G~-l~v~~-~~--g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~ 150 (372)
+..+.+||. |++.. .+ ..|+.++ +|+.+.+....+... ..++.|||+ |+++.... .|+.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 456788884 54443 33 3688888 566555443333334 778999997 65543222 388888 555 544
Q ss_pred EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d 229 (372)
+... . ......++.+||+ |+++.. ..+...||++|.++++.+.+........+.+++||
T Consensus 301 lt~~-~----~~~~~p~wSpDG~~I~f~s~---------------~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRH-R----AIDTEPSWHPDGKSLIFTSE---------------RGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccC-C----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 4221 1 1233567888985 555421 11345799999988887765422223345789999
Q ss_pred CCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371 230 EDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY 306 (372)
Q Consensus 230 g~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~ 306 (372)
|++++++...+ .+|+.+++++.+. ..+... .......++++|+ |+++....
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~--~~d~~ps~spdG~~I~~~~~~~--------------------- 414 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAM---QVLTST--RLDESPSVAPNGTMVIYSTTYQ--------------------- 414 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCe---EEccCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence 99998876533 4688888766432 222211 1122346888886 33333321
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371 307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 340 (372)
Q Consensus 307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 340 (372)
....++.++.+|+....+..+.|
T Consensus 415 -----------g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 415 -----------GKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred -----------CceEEEEEECCCCceEECcCCCC
Confidence 12347777888887776655444
No 48
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.48 E-value=5.8e-05 Score=67.77 Aligned_cols=191 Identities=19% Similarity=0.251 Sum_probs=117.9
Q ss_pred CCCCCccEEEcCCCcEEEEecCCeEEEE---e----CCce-----EEEE----ecCC--CcccCeEEcCCCCEEEEeCC-
Q 017371 77 SVNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTW-----VNWK----FIDS--QTLVGLTSTKEGHLIICDNA- 137 (372)
Q Consensus 77 ~~~~p~~i~~d~~G~l~v~~~~g~i~~~---~----~g~~-----~~~~----~~~~--~p~~gl~~d~dG~l~v~~~~- 137 (372)
.+..|.+++++++ .||+++.. +|+++ + .++. ..+. ...| +.+ .|++ .++++|+.++.
T Consensus 47 ~F~r~MGl~~~~~-~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f 122 (335)
T TIGR03032 47 TFPRPMGLAVSPQ-SLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF 122 (335)
T ss_pred ccCccceeeeeCC-eEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence 3678999999764 79999843 58888 2 1111 0111 1111 234 7888 57788888765
Q ss_pred CcEEEEcCCC-cEE-----EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371 138 NGLHKVSEDG-VEN-----FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (372)
Q Consensus 138 ~gv~~~~~~g-~~~-----l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~ 211 (372)
+-+..+++.- +.+ +.+....+.-=..|++|.....--|+|--+..=....| .+...+|++. +|..++
T Consensus 123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~-- 195 (335)
T TIGR03032 123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSG-- 195 (335)
T ss_pred eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCC--
Confidence 5677887543 222 11211111112568999965445777643311001111 1233455555 677656
Q ss_pred EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCc
Q 017371 212 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD 286 (372)
Q Consensus 212 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~ 286 (372)
+++++++.+|.+..|. ||+ ||+++++.+.+.+++.++ ++.+... ..+|+|.|+.+. |+ ++|+....|
T Consensus 196 evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 196 EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 4578999999999987 454 999999999999999753 3445554 578999999998 65 556666655
No 49
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.47 E-value=1.4e-06 Score=63.64 Aligned_cols=82 Identities=34% Similarity=0.582 Sum_probs=61.1
Q ss_pred cceEEccCCcEEEEeCCCCCCCcccc--cccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371 164 NDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 241 (372)
Q Consensus 164 ~~l~~d~dG~i~vtd~~~~~~~~~~~--~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 241 (372)
|+|+.-....+|+|+.. |-...+. .+...+.+.+.|+.||+ ++.+.+++++.+||||++++|+++|||++....
T Consensus 1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 35555556678888764 2222221 22333456788999998 578889999999999999999999999999999
Q ss_pred eEEEEEcc
Q 017371 242 RCRKYWLK 249 (372)
Q Consensus 242 ~i~~~~~~ 249 (372)
.|..|...
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99998753
No 50
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.47 E-value=0.00017 Score=70.87 Aligned_cols=185 Identities=16% Similarity=0.234 Sum_probs=125.1
Q ss_pred CCCCCCccEEEcCCCcEEEE-ecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--
Q 017371 76 GSVNHPEDASMDKNGVIYTA-TRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-- 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v~-~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-- 147 (372)
|.+..-.+++..|||.+.++ ..||+|..|+ ... +.+|........ ++.+...|+..++..-.| |..+| ...
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 55667788999999966554 4899999999 332 445555555566 899999999887765545 66677 444
Q ss_pred cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEE
Q 017371 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVAL 226 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~ 226 (372)
.+.+..+.+ .....+++|+.|.|.++-+. ..-.|+.++.+||+..-+..+...|. ++++
T Consensus 427 fRTft~P~p----~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 427 FRTFTSPEP----IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred eeeecCCCc----eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 555432211 34458999999998886331 22358888889999888888877774 6899
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecC
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL 285 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~ 285 (372)
+++++ ++++.+.+..|..+++-.. .++.|.+. .....-++.+-||| .+-|++...
T Consensus 487 ~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 487 SPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred ccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecc
Confidence 99998 6777777887877776442 23344432 11123456777888 577777653
No 51
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00026 Score=68.92 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=90.9
Q ss_pred eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
+|+.+| +|. .+.+........ ..++.|||+ |..+... ..|+.++ ..| .+.+.. ..+ .....++.+|
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence 566666 443 334433323344 788999996 4333221 3588888 566 544432 122 2335688899
Q ss_pred Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEc
Q 017371 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 248 (372)
Q Consensus 172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 248 (372)
|+ |+++.. ......||.+|.++++.+.+...........|+|||+.++++... ...|+++++
T Consensus 257 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLS---------------QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEe---------------cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 95 555422 113457999999888877665443334467899999988876532 357999988
Q ss_pred cCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371 249 KGERKGKLETFAENLPGAPDNINLAPDGTFW 279 (372)
Q Consensus 249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 279 (372)
++.... .+.. ..+........+||+..
T Consensus 322 ~g~~~~---~lt~-~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 322 DGSNPR---RISF-GGGRYSTPVWSPRGDLI 348 (435)
T ss_pred CCCCeE---Eeec-CCCcccCeEECCCCCEE
Confidence 764322 2221 12223446778888643
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.44 E-value=8.6e-05 Score=71.22 Aligned_cols=216 Identities=12% Similarity=0.136 Sum_probs=119.0
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCccc--ccc
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKL--RFA 163 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~~--~~~ 163 (372)
++.+|+++.+|.++.+| +|+...-....+.......+. +|.+|+......++.+| .+|...+........+ ...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 57899999889999999 676433222222222122333 67888886555699999 6783333222111110 001
Q ss_pred cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce---------EEEec--CCCE
Q 017371 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY 232 (372)
Q Consensus 164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g---------i~~~~--dg~~ 232 (372)
..-+++ +|.+|+.. .+|.++.+|.++|+..+... ...|.+ +..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~~------------------~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVGG------------------DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEEc------------------CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence 111232 46677753 46789999998887654321 111110 00111 2446
Q ss_pred EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371 233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 312 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~ 312 (372)
+|++.. ++.++.++..+.+. .+..... .+..+.. .+|++|+++..
T Consensus 259 vy~~~~-~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~---------------------------- 303 (394)
T PRK11138 259 VYALAY-NGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQN---------------------------- 303 (394)
T ss_pred EEEEEc-CCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence 888764 56799998864321 2221111 1223333 36789988754
Q ss_pred cccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 313 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 313 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
+.++++|. +|+.+.......+. ..++....+++||+++..+ +|..++.
T Consensus 304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~ 352 (394)
T PRK11138 304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINR 352 (394)
T ss_pred -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEEC
Confidence 57888985 57776654332222 2344455688899888654 5555553
No 53
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.44 E-value=0.00017 Score=67.29 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=94.4
Q ss_pred CCccEEEcCCC-cEEEEe-c-CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE--EcCCC-cEEE
Q 017371 80 HPEDASMDKNG-VIYTAT-R-DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK--VSEDG-VENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~-~-~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~--~~~~g-~~~l 151 (372)
.|+.+++++|| .||+.+ . ++.|..+| .+++..-....+... .+....+.....|-.+ .... ++.+| ...-
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg-~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDG-SLAKVGYGTKGNPKIK 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecC-ceEEEEecCCCceEEe
Confidence 45589999999 589888 3 78899999 555433223333333 3333333333333222 2333 33444 2211
Q ss_pred eeec-CC---cccccccceEEcc-CC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-----e-C---
Q 017371 152 LSYV-NG---SKLRFANDVVEAS-DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----A-D--- 216 (372)
Q Consensus 152 ~~~~-~~---~~~~~~~~l~~d~-dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-----~-~--- 216 (372)
.... .+ .-+..| .+.+ +| .+|++ ..|.|+.+|..+.+.... . .
T Consensus 184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs-------------------~eG~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPT-------------------YTGKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eeeeecCCccccccCC---ceEcCCCcEEEEe-------------------cCCeEEEEecCCCcceecceeeecccccc
Confidence 1111 11 111222 2233 56 45554 237899999543322221 1 1
Q ss_pred -CccCcce---EEEecCCCEEEEEe---------CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC--EEEE
Q 017371 217 -GFYFANG---VALSRDEDYVVVCE---------SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIA 281 (372)
Q Consensus 217 -~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwva 281 (372)
.-..|-| +++++|++++||.. ...+.|+.++..+.+ ...... ....|.++++++||. +|++
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i~-vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKIE-LGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEEe-CCCceeeEEECCCCCeEEEEe
Confidence 1123444 99999999999953 233589999976532 211111 223589999999997 4555
Q ss_pred Eec
Q 017371 282 IIK 284 (372)
Q Consensus 282 ~~~ 284 (372)
+..
T Consensus 318 n~~ 320 (352)
T TIGR02658 318 STG 320 (352)
T ss_pred CCC
Confidence 544
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.44 E-value=0.00016 Score=69.30 Aligned_cols=213 Identities=16% Similarity=0.223 Sum_probs=119.7
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCCc------ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecC---
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT------LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVN--- 156 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p------~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~--- 156 (372)
+|.+|+++.+|.|+.+| +|+.. |......+ ...-.+. +|.++++.....++.++ .+|...+.....
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 56788888888899998 66643 32222111 0022232 46788876655688888 677111111110
Q ss_pred C-ccc---ccc-cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371 157 G-SKL---RFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (372)
Q Consensus 157 ~-~~~---~~~-~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~ 231 (372)
+ ... ... ..-.+ .+|.+|++. ..|.++.+|..+|+..+.. .+..+..+++ +++
T Consensus 238 ~~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~-~~~~~~~~~~--~~~ 295 (394)
T PRK11138 238 GATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKR-EYGSVNDFAV--DGG 295 (394)
T ss_pred CccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEee-cCCCccCcEE--ECC
Confidence 0 000 000 01112 367888864 3578999999999866533 2222333333 355
Q ss_pred EEEEEeCCCCeEEEEEccCCCCcceeeeccC-CC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371 232 YVVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 309 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~-g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~ 309 (372)
.+|+... +++++.++..+.+ ..+... .. .......+ .+|.+|+++..
T Consensus 296 ~vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~------------------------- 344 (394)
T PRK11138 296 RIYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE------------------------- 344 (394)
T ss_pred EEEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECCEEEEEeCC-------------------------
Confidence 6888764 5689999986532 122111 11 11122222 36889998765
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371 310 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~ 370 (372)
+.++.+|. +|+++..+....+. ..+.....+++||+++..+ .|..++
T Consensus 345 ----------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G-~l~~~~ 392 (394)
T PRK11138 345 ----------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDG-TVYAIT 392 (394)
T ss_pred ----------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCc-eEEEEe
Confidence 67888885 69998877654322 2344556788999998764 454454
No 55
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00017 Score=69.92 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=104.1
Q ss_pred ccEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371 82 EDASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE 149 (372)
Q Consensus 82 ~~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~ 149 (372)
.+..+.+||. |.+.. .+..|+.++ +|+.+.+....+... ..++.|||+ |+++... ..|+.++ .++ .+
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 3567888884 43332 234678777 566555543334444 788999996 5544222 2488888 556 55
Q ss_pred EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371 150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (372)
Q Consensus 150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~ 228 (372)
.+... . .......+.+||+ |+++-.. .....||++|.++++.+.+..........+++|
T Consensus 281 ~lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 281 QVTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS 340 (429)
T ss_pred EccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECC
Confidence 44322 1 1234678889996 5443210 123479999998887766644333345688999
Q ss_pred CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
||+.++++...+ ..|+.+++++.. ...+... ..-....+.+||...+...
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEEE
Confidence 999888765432 458888876543 2233221 1123467889997544443
No 56
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00031 Score=68.18 Aligned_cols=202 Identities=15% Similarity=0.212 Sum_probs=116.5
Q ss_pred cEEEcCCC-cEEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEE
Q 017371 83 DASMDKNG-VIYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN 150 (372)
Q Consensus 83 ~i~~d~~G-~l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~ 150 (372)
+.++.++| .|++.+ . ...|+.++ +|+.+.+....+... ..++.|||+ |+++... ..++.++ ..+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 45677888 455544 2 34588888 566555543334445 788999996 5444222 2477777 444 444
Q ss_pred EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d 229 (372)
+... .+ ......+.+||+ |+++.. ......||.++.++++.+.+..........+++||
T Consensus 279 lt~~-~~----~~~~~~wSpDG~~l~f~s~---------------~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 279 LTQS-SG----IDTEPFFSPDGRSIYFTSD---------------RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCC-CC----CCcCeEEcCCCCEEEEEec---------------CCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 3221 11 123467889996 555321 01334799999877766655422222335789999
Q ss_pred CCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371 230 EDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 307 (372)
Q Consensus 230 g~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p 307 (372)
|++++++...+ ..|+.+++++.+ ...+... +......+.+||+..+.....
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~---------------------- 391 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQ---------------------- 391 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEec----------------------
Confidence 99888765433 368888876542 2222221 123567889999643333320
Q ss_pred ccccccccCCCceEEEEECCCCcEEEEEECCCCC
Q 017371 308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 341 (372)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~ 341 (372)
.....++.++.+|+....+..+.|.
T Consensus 392 ---------~g~~~l~~~~~~g~~~~~l~~~~g~ 416 (427)
T PRK02889 392 ---------GGRSVLAAVSSDGRIKQRLSVQGGD 416 (427)
T ss_pred ---------CCCEEEEEEECCCCceEEeecCCCC
Confidence 0124577778888877766655553
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=0.00026 Score=62.52 Aligned_cols=170 Identities=17% Similarity=0.215 Sum_probs=97.7
Q ss_pred EEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEE-ee-ecCCc
Q 017371 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF-LS-YVNGS 158 (372)
Q Consensus 85 ~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l-~~-~~~~~ 158 (372)
++..+|.+|+++.++.|+.++ +|+.. |......+......-.++.+|++.....++.+| .+| ...- .. ..+..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVL-WRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEE-EEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEE-EEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 554578999999999999999 67653 333333332133234578899987666799999 888 3222 11 11111
Q ss_pred ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc------------eEEE
Q 017371 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN------------GVAL 226 (372)
Q Consensus 159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~------------gi~~ 226 (372)
........+++ ++.+|++. ..+.|+.+|+++|+...-... ..+. +-.+
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp STB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred ccccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence 12222233443 45677753 367899999999988664433 2211 2223
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
..++ .+|++...+ ++..++..+.+ . .+... ...+..+....++.+|+.+
T Consensus 171 ~~~~-~v~~~~~~g-~~~~~d~~tg~---~-~w~~~-~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 171 ISDG-RVYVSSGDG-RVVAVDLATGE---K-LWSKP-ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp CCTT-EEEEECCTS-SEEEEETTTTE---E-EEEEC-SS-ECECEECCCTEEEEEE
T ss_pred EECC-EEEEEcCCC-eEEEEECCCCC---E-EEEec-CCCccCCceeeCCEEEEEe
Confidence 3344 688877544 46666775432 1 23212 2223444456677899988
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.0002 Score=68.25 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=74.3
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCC-CCceeEEcC
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPG-APDNINLAP 274 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g-~p~~i~~d~ 274 (372)
..|.++.+|.++|+..+... .......++ +++.+|+.. .++.|+.++.++.+. .+.. ...+ ......+ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcE----EEccccccCCccccCEE-E
Confidence 46789999998888765443 222223333 456688876 456899999864321 1111 1111 1112233 3
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEEC
Q 017371 275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD 353 (372)
Q Consensus 275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~ 353 (372)
++.+|+++.. +.++.+|. +|+++..+....+. ..++....+
T Consensus 320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~ 361 (377)
T TIGR03300 320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG 361 (377)
T ss_pred CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence 5678887754 68889986 59999888765432 234456677
Q ss_pred CEEEEEeCCCCe
Q 017371 354 NHLYVISLTSNF 365 (372)
Q Consensus 354 g~L~igs~~~~~ 365 (372)
++||+++..+.-
T Consensus 362 ~~l~v~~~dG~l 373 (377)
T TIGR03300 362 DGLLVQTRDGDL 373 (377)
T ss_pred CEEEEEeCCceE
Confidence 899999987543
No 59
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00042 Score=67.28 Aligned_cols=202 Identities=16% Similarity=0.179 Sum_probs=116.9
Q ss_pred ccEEEcCCCc-E-EEEec--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371 82 EDASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE 149 (372)
Q Consensus 82 ~~i~~d~~G~-l-~v~~~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~ 149 (372)
.+..+.++|. | |+... ...|+.++ +|+.+.+....+... ..++.|||+ |+++... ..++.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 4456778884 5 44433 34688888 566655544333444 678999996 4444322 2488888 555 54
Q ss_pred EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371 150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (372)
Q Consensus 150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~ 228 (372)
.+... .+ ......+.+||+ |+++.. ..+...||++|.++++.+.+...........++|
T Consensus 281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~---------------~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-PA----IDTEPFWGKDGRTLYFTSD---------------RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-CC----CcCCeEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 44321 11 123457788885 666421 1134579999988888766543322233467999
Q ss_pred CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371 229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 306 (372)
Q Consensus 229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~ 306 (372)
||+.++++.... ..|+.+++++.+ ...+... +......+.+||+..+-...
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~---------------------- 393 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATR---------------------- 393 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEe----------------------
Confidence 999998886533 358888886542 2222221 12234578889864443332
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371 307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 340 (372)
Q Consensus 307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 340 (372)
......++.++.+|+..+.+..+.|
T Consensus 394 ---------~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 394 ---------QQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred ---------cCCceEEEEEECCCCceEECcCCCC
Confidence 0113457777778877665555444
No 60
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.001 Score=64.91 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=80.7
Q ss_pred CeEEcCCCC-EEEE-eCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccccccccc
Q 017371 122 GLTSTKEGH-LIIC-DNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 194 (372)
Q Consensus 122 gl~~d~dG~-l~v~-~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~ 194 (372)
...+.|||+ |+++ ... ..|+.++ ..| .+.+... .+ .....++.+||+ |+++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~-------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK-------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC--------------
Confidence 788999996 4333 222 2488888 555 4444321 22 123568889996 6664221
Q ss_pred ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 272 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~ 272 (372)
.+...||.+|.++++.+.+..........+|+|||++++++.. +...|+++++++.+. +..... ........+
T Consensus 283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~ 357 (448)
T PRK04792 283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSI 357 (448)
T ss_pred -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeE
Confidence 1344699999988887776554334456789999998887654 235688888865432 222111 112234578
Q ss_pred cCCCCEE
Q 017371 273 APDGTFW 279 (372)
Q Consensus 273 d~~G~lw 279 (372)
.+||+..
T Consensus 358 SpDG~~l 364 (448)
T PRK04792 358 TPDGRSM 364 (448)
T ss_pred CCCCCEE
Confidence 8888643
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0012 Score=64.05 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=90.1
Q ss_pred eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeC---CCcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDN---ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~---~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
.|+.+| +|. .+.+... ..+....++.|||+ |.++.. ...++.++ ..| .+.+... .+ .....++.||
T Consensus 180 ~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence 455555 443 3333332 22333888999996 333221 13477777 556 4444321 21 2235789999
Q ss_pred Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEc
Q 017371 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 248 (372)
Q Consensus 172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~ 248 (372)
|+ |+++... .+...||.+|.++++.+.+...........|+|||+.++++... ...|+.+++
T Consensus 254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 95 6664221 12346999999888887765554445678899999988665432 347888888
Q ss_pred cCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371 249 KGERKGKLETFAENLPGAPDNINLAPDGTFWI 280 (372)
Q Consensus 249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 280 (372)
++... +.+.. ..+......+.+||+..+
T Consensus 319 ~~g~~---~~lt~-~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 319 NGGAP---QRITW-EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCe---EEeec-CCCCccCEEECCCCCEEE
Confidence 76432 22221 122234577888886443
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.29 E-value=0.00076 Score=59.55 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred EEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEE
Q 017371 124 TSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 202 (372)
Q Consensus 124 ~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~ 202 (372)
.+..+|.+|+++....|+.+| .+|........++. ...+ ..-.++.+|+.. ..++|+
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~---~~~~~~~v~v~~------------------~~~~l~ 89 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA---PVVDGGRVYVGT------------------SDGSLY 89 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG---EEEETTEEEEEE------------------TTSEEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce---eeeccccccccc------------------ceeeeE
Confidence 444578999997778899999 68833333332322 1111 234577888864 345899
Q ss_pred EEeCCCCeEEEEe-CCc----cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCC-C--------Cc
Q 017371 203 KYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-A--------PD 268 (372)
Q Consensus 203 ~~d~~t~~~~~~~-~~~----~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g-~--------p~ 268 (372)
.+|..+|+..+.. ... ..........+++.+|+... +..|+.+++++.+.-..... ...++ . ..
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDING 167 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEE
T ss_pred ecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec-CCCCCCcceeeeccccc
Confidence 9998889887753 211 11112223334666877775 56799999765422111111 11110 0 01
Q ss_pred eeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccce
Q 017371 269 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVT 347 (372)
Q Consensus 269 ~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t 347 (372)
...++ +|.+|++... +.++++| .+|+.+. ..+.+. ...
T Consensus 168 ~~~~~-~~~v~~~~~~-----------------------------------g~~~~~d~~tg~~~w--~~~~~~---~~~ 206 (238)
T PF13360_consen 168 SPVIS-DGRVYVSSGD-----------------------------------GRVVAVDLATGEKLW--SKPISG---IYS 206 (238)
T ss_dssp EEECC-TTEEEEECCT-----------------------------------SSEEEEETTTTEEEE--EECSS----ECE
T ss_pred ceEEE-CCEEEEEcCC-----------------------------------CeEEEEECCCCCEEE--EecCCC---ccC
Confidence 22223 5578887765 2356666 4566553 222221 122
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCC
Q 017371 348 SGLQVDNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 348 ~~~~~~g~L~igs~~~~~i~~~~~~ 372 (372)
.....++.||+++ ....|..+++.
T Consensus 207 ~~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 207 LPSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp CEECCCTEEEEEE-TTTEEEEEETT
T ss_pred CceeeCCEEEEEe-CCCEEEEEECC
Confidence 2556789999999 78999888863
No 63
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.001 Score=64.21 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=120.1
Q ss_pred EEEcCCCc--EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEE
Q 017371 84 ASMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN 150 (372)
Q Consensus 84 i~~d~~G~--l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~ 150 (372)
-.+.++|+ +|+.+ . +..|+.++ +|+.+.+....+... ...+.|||+ |.++... ..++.++ ..| .+.
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 44667874 66554 2 45788888 677766655434334 567889995 5444322 3488888 555 555
Q ss_pred EeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371 151 FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d 229 (372)
+... ++ ....-.+.+|| +|+|+... .....||++|.++++.+.+..... .+ ..++||
T Consensus 272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPD 329 (419)
T PRK04043 272 ITNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTY 329 (419)
T ss_pred cccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCC
Confidence 4322 21 01123688999 58776431 134579999999888866543211 12 489999
Q ss_pred CCEEEEEeCCC--------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHH
Q 017371 230 EDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK 300 (372)
Q Consensus 230 g~~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r 300 (372)
|+.+.++.... ..|+.+++++.. ...+... +.-....+.+||. |+++...
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~---------------- 388 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYL---------------- 388 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEcc----------------
Confidence 99888776533 478888887643 2233221 2223467889996 4444332
Q ss_pred HHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCC
Q 017371 301 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 341 (372)
Q Consensus 301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~ 341 (372)
.....+..++-+|+....+....|.
T Consensus 389 ----------------~~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 389 ----------------GNQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred ----------------CCcEEEEEEecCCCeeEEeecCCCc
Confidence 1134688888899887777665554
No 64
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.0007 Score=65.86 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=103.2
Q ss_pred ccEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371 82 EDASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE 149 (372)
Q Consensus 82 ~~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~ 149 (372)
.+..+.+||. |++.+ .+..|+.++ +|+.+.+....+... ..++.|||+ |+++... ..|+.++ .++ .+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 3456778884 44433 346789888 566655544334445 788999996 4444322 2488888 555 54
Q ss_pred EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371 150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (372)
Q Consensus 150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~ 228 (372)
.+... .+ ......+.+||+ |+++.. ..+...||.+|.++++.+.+..+........|+|
T Consensus 284 ~Lt~~-~~----~~~~~~~spDG~~i~f~s~---------------~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 284 RLTDS-PA----IDTSPSYSPDGSQIVFESD---------------RSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP 343 (435)
T ss_pred EccCC-CC----ccCceeEcCCCCEEEEEEC---------------CCCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence 44221 11 223467889985 555421 1134579999988777776654332334578999
Q ss_pred CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371 229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
||+.++++.... .+|+.+++++.. ...+... .......+.+||+.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~--~~~~~p~~spDG~~ 390 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG--FLVEGPTWAPNGRV 390 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC--CCCCCCeECCCCCE
Confidence 999998876432 478888876542 2222211 12456788999964
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.25 E-value=0.0011 Score=64.04 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=101.7
Q ss_pred EEEcCCCc-EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEE
Q 017371 84 ASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF 151 (372)
Q Consensus 84 i~~d~~G~-l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l 151 (372)
..+.++|+ |+++. . ...|+.++ +|+.+.+....+... .+++.+||+ |+++... ..++.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 45667774 44444 2 24688888 565555544444455 788999996 6554332 2488888 555 4443
Q ss_pred eeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg 230 (372)
... .+ ......+.+||+ |+++... .....||.+|.++++.+.+...........+++||
T Consensus 274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 221 11 112446778885 5443211 13347999998888776665444445578899999
Q ss_pred CEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371 231 DYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 282 (372)
Q Consensus 231 ~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~ 282 (372)
+.++++.... .+|+.+++++. ....+.. ........+.++|+ |+++.
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEE
Confidence 9888876543 37888887653 2222221 11234457788886 44433
No 66
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.0015 Score=63.35 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=86.7
Q ss_pred eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
+|+.+| +|. .+.+........ ..++.|||+ |+++.... .++.++ .+| ...+.. .++ .....++.+|
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 456666 443 233322222334 788999996 44443222 388888 566 444432 122 2236788999
Q ss_pred Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL 248 (372)
Q Consensus 172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~ 248 (372)
|+ |+++-. ......||.+|.++++.+.+...........|+|||++++++.. +...|+.+++
T Consensus 251 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALS---------------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEc---------------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 94 665422 11345799999887776655433222345679999998887643 3346777776
Q ss_pred cCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371 249 KGERKGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
++.+. +... ...+......+.+||+.
T Consensus 316 ~~g~~---~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 316 SGGAA---QRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred CCCce---EEEe-cCCCCcCceEECCCCCE
Confidence 65322 1211 11122335678888864
No 67
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.21 E-value=7.1e-05 Score=64.03 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred EEcCCCcEEEEec----------CCeEEEEe-CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcE--EEEc-CCC-
Q 017371 85 SMDKNGVIYTATR----------DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGL--HKVS-EDG- 147 (372)
Q Consensus 85 ~~d~~G~l~v~~~----------~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv--~~~~-~~g- 147 (372)
-+||+|+.|.|+. .|.++++. +++++.+-..-+.++ ||++|.|. .+|+.|+. ..| +.+| +.|
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 4778898888861 24555555 667776666667888 99999766 57888765 356 4444 555
Q ss_pred c---EEEee-e-cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371 148 V---ENFLS-Y-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 213 (372)
Q Consensus 148 ~---~~l~~-~-~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~ 213 (372)
+ ..+.+ . ........|.++++|.+|+|||+.. ..++|+++||.||+.-.
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-----------------ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-----------------NGGTVQKVDPTTGKILL 247 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-----------------cCcEEEEECCCCCcEEE
Confidence 2 22222 1 1111235789999999999999865 35789999999998643
No 68
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00099 Score=64.69 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=101.2
Q ss_pred CccEEEcCCCc-EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-c
Q 017371 81 PEDASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-V 148 (372)
Q Consensus 81 p~~i~~d~~G~-l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~ 148 (372)
..+..+.++|. |.++. . +..|+.++ +|+.+.+....+... .+++.|||+ |+++.... .|+.++ ..+ .
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 34567888884 44433 2 34688888 565555544334445 788999997 44443222 367777 445 4
Q ss_pred EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEe
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 227 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~ 227 (372)
+.+... . .......+.+||+ |+++.. ..+.-.||.++..++..+.+ .... ....++
T Consensus 285 ~~lt~~-~----~~~~~~~wSpDG~~i~f~s~---------------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~S 341 (429)
T PRK01742 285 SQLTSG-A----GNNTEPSWSPDGQSILFTSD---------------RSGSPQVYRMSASGGGASLV-GGRG--YSAQIS 341 (429)
T ss_pred EeeccC-C----CCcCCEEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEe-cCCC--CCccCC
Confidence 444221 1 1244678899996 565421 11345799998876665554 2211 346789
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
|||+.++++.. +.++++++.+.+ ........ ......++++|++.+....
T Consensus 342 pDG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 342 ADGKTLVMING--DNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCEEEEEcC--CCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEEEc
Confidence 99998887754 568888876532 22222111 1245678999986665543
No 69
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.20 E-value=0.0008 Score=63.48 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=98.4
Q ss_pred CccEEEcCCCcEEEEecCCeEEEEe-CC-ceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee-ecC
Q 017371 81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS-YVN 156 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~-~~~ 156 (372)
.-++.+.++|.+.+|+.+|.|+.|+ ++ ++. ....-.+... +|.+-.+|.|.-+..++.+..+|. ..+.+.. +.+
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELP 326 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccc-cccccccccCc
Confidence 4468888999999999999999999 33 222 2223335566 888889999887655566777772 1222221 112
Q ss_pred CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 236 (372)
..+..+..++....+ |||..++ +.|+.=+..++-...+......--|++.+|+.+ +|++
T Consensus 327 -e~~G~iRtv~e~~~d-i~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T 385 (626)
T KOG2106|consen 327 -EQFGPIRTVAEGKGD-ILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLT 385 (626)
T ss_pred -hhcCCeeEEecCCCc-EEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heee
Confidence 123456667665434 9997542 345544444333222222223456899999887 5555
Q ss_pred eCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.. .++-.+.|- ..+..-...+.+ + .....+++.|.+-++...
T Consensus 386 ~g-qdk~v~lW~-~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~ 427 (626)
T KOG2106|consen 386 CG-QDKHVRLWN-DHKLEWTKIIED--P--AECADFHPSGVVAVGTAT 427 (626)
T ss_pred cc-CcceEEEcc-CCceeEEEEecC--c--eeEeeccCcceEEEeecc
Confidence 43 344555554 222222222221 1 234556677755555544
No 70
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=0.0011 Score=59.01 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=113.3
Q ss_pred CCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEE--EcCCC
Q 017371 76 GSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHK--VSEDG 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~--~~~~g 147 (372)
|....-.++.++++- .||... ..-.|..++ +|.+-...+ ...+|- +|..-.+|...+++.. +.++. ++.++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 334456778899765 566554 556788888 776543322 234566 7777766666566554 33444 44443
Q ss_pred -cEEEee---ec--CCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC---
Q 017371 148 -VENFLS---YV--NGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--- 217 (372)
Q Consensus 148 -~~~l~~---~~--~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--- 217 (372)
+..... .. ...+.....+++.|+. +++||+-.. .--+||.++........-...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCcc
Confidence 222221 11 1122446679999985 478886331 223577776432222211100
Q ss_pred ------ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCccee------eeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 218 ------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE------TFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 218 ------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~------~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+..-.|+.+++..+.|+|.......+..++.+|...+... ......| .+.|++.|.+|+|||.+-.
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEecC
Confidence 1234588899888889998888888999998876322211 1111122 4789999999999999865
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.18 E-value=0.0019 Score=61.33 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=116.4
Q ss_pred CCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEE--ecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-C-CC
Q 017371 75 EGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E-DG 147 (372)
Q Consensus 75 ~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~--~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~-~g 147 (372)
.|.-..-..+.+.++| +||.++.+|.|..|+ .|.-..+. .-.+... +++....+.++.+..+.-|.+++ . +|
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCc
Confidence 3444456678888877 788999999999999 34322221 1223445 88888778999888777788887 3 33
Q ss_pred cEE-EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371 148 VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 226 (372)
Q Consensus 148 ~~~-l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~ 226 (372)
... ...... ..|.++++.++|.+.+.. ....|..+.-. +....+ .-...+.++|+
T Consensus 396 ~t~~~~~~lg----~QP~~lav~~d~~~avv~------------------~~~~iv~l~~~-~~~~~~-~~~y~~s~vAv 451 (603)
T KOG0318|consen 396 YTKSEVVKLG----SQPKGLAVLSDGGTAVVA------------------CISDIVLLQDQ-TKVSSI-PIGYESSAVAV 451 (603)
T ss_pred ccccceeecC----CCceeEEEcCCCCEEEEE------------------ecCcEEEEecC-Ccceee-ccccccceEEE
Confidence 211 111112 356699999987543321 22335555433 222222 23456789999
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+||++.+.|... +..|+.|.+.|..+.+.... ....+-+..++..+||.+.+++-.
T Consensus 452 ~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 452 SPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKL-LEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred cCCCCEEEEecc-cceEEEEEecCCcccceeee-ecccCCceEEEECCCCcEEEEecc
Confidence 999997777654 56799999988654332222 234556888999999998888766
No 72
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.17 E-value=5.4e-05 Score=70.75 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=92.3
Q ss_pred CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-c-EEEeee--cCCcccccccceEEccC----CcEEEEeCCCCCCCccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG-V-ENFLSY--VNGSKLRFANDVVEASD----GSLYFTVSSSKYLPHEY 188 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~-~~l~~~--~~~~~~~~~~~l~~d~d----G~i~vtd~~~~~~~~~~ 188 (372)
..|. +|++.|||++||++....|.+++.+| . ..+... ..........+|+++++ +.||+.-+...
T Consensus 2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~------ 74 (331)
T PF07995_consen 2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD------ 74 (331)
T ss_dssp SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-------
T ss_pred CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEccc------
Confidence 4688 99999999999998755577777677 4 443332 22223346678999984 89999744200
Q ss_pred ccccccccCCCeEEEEeCCCC-----eEEEEeC-------CccCcceEEEecCCCEEEEEeC-------------CCCeE
Q 017371 189 CLDILEGKPHGQLLKYDPSSN-----ITTLVAD-------GFYFANGVALSRDEDYVVVCES-------------WKFRC 243 (372)
Q Consensus 189 ~~~~~~~~~~g~v~~~d~~t~-----~~~~~~~-------~~~~~~gi~~~~dg~~l~v~~~-------------~~~~i 243 (372)
........+|.|+..+.+ ..+.+.. ..+...+++|.||| .|||+-- ....|
T Consensus 75 ---~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 75 ---EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp ---TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred ---CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 000112246766654322 2223322 23344579999999 6998742 23479
Q ss_pred EEEEccCCC----------CcceeeeccCCCCCCceeEEcCC-CCEEEEEecC
Q 017371 244 RKYWLKGER----------KGKLETFAENLPGAPDNINLAPD-GTFWIAIIKL 285 (372)
Q Consensus 244 ~~~~~~g~~----------~~~~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~ 285 (372)
.|++.+|.- ....+++...+- .|-++++|+. |+||+++.+.
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-S
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCC
Confidence 999987641 012234443222 3778999999 9999999764
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0018 Score=62.89 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred CeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccccccccc
Q 017371 122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 194 (372)
Q Consensus 122 gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~ 194 (372)
+.++.|||+ |+++... ..|+.++ ..| .+.+.. .++ ......+.+||+ |+++.+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~-------------- 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR-------------- 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence 788899996 4444322 2388888 556 444432 122 123568899995 6664321
Q ss_pred ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL 272 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~ 272 (372)
.+...||.+|.++++.+.+..........+|+|||++++++... ...|+.+++++.+. +.+. ..........+
T Consensus 269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASV 343 (433)
T ss_pred -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEE
Confidence 13457999999888877655443333467899999988876532 34688888765432 2222 11123445788
Q ss_pred cCCCCEE
Q 017371 273 APDGTFW 279 (372)
Q Consensus 273 d~~G~lw 279 (372)
.+||+..
T Consensus 344 SpDG~~I 350 (433)
T PRK04922 344 SPDGKKI 350 (433)
T ss_pred CCCCCEE
Confidence 8898643
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.13 E-value=0.0008 Score=59.58 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=104.6
Q ss_pred cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeCCccCcceEEEecCCCEEEEEe
Q 017371 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCE 237 (372)
Q Consensus 160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~~~~~~~gi~~~~dg~~l~v~~ 237 (372)
..|..++.+..+|.+|-+... | +..+|.++|+++|++.. -...-.|..|+++.. +.+|...
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLT 106 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLT 106 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEE
Confidence 357789999889999998642 1 34579999999998654 234556788999884 4699999
Q ss_pred CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCC
Q 017371 238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 317 (372)
Q Consensus 238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~ 317 (372)
...+..++|+.++ ......|. .++--=|++.|. ..||+++.+
T Consensus 107 Wk~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS--------------------------------- 148 (264)
T PF05096_consen 107 WKEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS--------------------------------- 148 (264)
T ss_dssp SSSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SS---------------------------------
T ss_pred ecCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCc---------------------------------
Confidence 9899999999864 23333342 122234677553 379999876
Q ss_pred CceEEEEECCC-CcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 318 GGAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 318 ~~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
..+..+||+ -+....+... +|............+|.||..-+..+.|.+|+.
T Consensus 149 --~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 149 --SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp --SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred --cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 478889975 4555554432 466667777888889999999999999999985
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.0038 Score=60.24 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=91.1
Q ss_pred eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC--EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEcc
Q 017371 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 170 (372)
Q Consensus 100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~--l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~ 170 (372)
+|+..| +|. .+.+... + +.....+.|||+ +|++... ..|+.++ .+| .+.+.. .++. .....+.+
T Consensus 170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSK 242 (419)
T ss_pred eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECC
Confidence 566666 554 3333333 3 433778889996 5654332 2488888 667 555543 2221 11245788
Q ss_pred CC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEE
Q 017371 171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYW 247 (372)
Q Consensus 171 dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~ 247 (372)
|| +|.++... .++..||.+|.++++.+.+...-..-....|+|||+.++++... ...|++++
T Consensus 243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 98 57665331 24568999998888877654332222345799999988887643 24799999
Q ss_pred ccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 248 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 248 ~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
+++.+.. ..... +. .+..+++||...+-.
T Consensus 308 l~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 308 LNSGSVE---QVVFH--GK-NNSSVSTYKNYIVYS 336 (419)
T ss_pred CCCCCeE---eCccC--CC-cCceECCCCCEEEEE
Confidence 8764322 22211 11 235788899744433
No 76
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.09 E-value=0.0045 Score=59.69 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=90.9
Q ss_pred eEEEEe-CC-ceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 100 ~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
.|+..+ +| ..+.+........ ..++.+||+ |+++... ..++.++ .+| ...+.. ..+ ....+++.+|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 466666 43 3444443322344 778889997 3333322 2477888 566 444322 122 2335788899
Q ss_pred Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL 248 (372)
Q Consensus 172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~ 248 (372)
|+ |+++... .....||.+|.++++.+.+...........|++||+.++++.. +...|+.+++
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 85 6665321 1345699999987776665443322335688999998876643 2347888888
Q ss_pred cCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 249 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
++.+. ..+. ..........++++|+..+...
T Consensus 310 ~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 310 DGGEV---RRLT-FRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCCE---EEee-cCCCCccCeEECCCCCEEEEEE
Confidence 65432 2222 1122345677888886544443
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0085 Score=58.16 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=86.6
Q ss_pred EEEEe-CC-ceEEEEecCCCcccCeEEcCCCC-E-EEEeCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCC
Q 017371 101 IKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG 172 (372)
Q Consensus 101 i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~-l-~v~~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG 172 (372)
|+..| +| ..+.+........ ...+.|||+ | |+.... ..|+.++ .+| .+.+... .+ ......+.+||
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCC
Confidence 44455 44 3333333222334 778999996 4 333222 2478888 556 5444221 21 12356888998
Q ss_pred c-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEcc
Q 017371 173 S-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLK 249 (372)
Q Consensus 173 ~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~ 249 (372)
+ |+++... .+...||.+|.++++.+.+...........|+|||+.++++... ...|+.++++
T Consensus 255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 5 6654321 13357999999988877655433334457899999988776532 3478888876
Q ss_pred CCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371 250 GERKGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 250 g~~~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
+.+.. .+.. .........+++||+.
T Consensus 320 ~g~~~---~lt~-~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 320 GGRAE---RVTF-VGNYNARPRLSADGKT 344 (430)
T ss_pred CCCEE---Eeec-CCCCccceEECCCCCE
Confidence 54322 2211 1112334567888853
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.01 E-value=0.0074 Score=59.63 Aligned_cols=253 Identities=12% Similarity=0.046 Sum_probs=126.3
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCC------cccCeEEcCCCCEEEEeC---------CCcEEEEc-CCCcEE
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDGVEN 150 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~------p~~gl~~d~dG~l~v~~~---------~~gv~~~~-~~g~~~ 150 (372)
++.+|+++.+|.|+.+| +|+...-...... ...+..+. ++.+|++.. ...++.+| .+|...
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 37999999999999999 6765432222111 12133444 477777642 23488889 677322
Q ss_pred EeeecC-Ccc--c---------------ccccceEEcc-CCcEEEEeCCCCCCCcccccc--cccccCCCeEEEEeCCCC
Q 017371 151 FLSYVN-GSK--L---------------RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD--ILEGKPHGQLLKYDPSSN 209 (372)
Q Consensus 151 l~~~~~-~~~--~---------------~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~--~~~~~~~g~v~~~d~~t~ 209 (372)
+..... ... . ......++|+ +|.+|+...... . ..+... .......+.|+.+|.++|
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~-~-~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGS-P-WNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCC-C-CccCCccCCCCCCceeeEEEEcCCCC
Confidence 222111 000 0 0112356664 578998754210 0 000000 001123458999999999
Q ss_pred eEEEEeCCc-------cCcceEEEe----cCCC---EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371 210 ITTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 275 (372)
Q Consensus 210 ~~~~~~~~~-------~~~~gi~~~----~dg~---~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~ 275 (372)
+..+..... ..+....+. -+|+ .+|+. +..++++.++..+.+.- +..... -.++..++
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~----W~~~~~--~~~~~~~~- 338 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLI----SARPEV--EQPMAYDP- 338 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEe----eEeEee--ccccccCC-
Confidence 988764321 111111221 2333 34444 45667999998654211 111110 12344554
Q ss_pred CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCC------eecccee
Q 017371 276 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQ------LMSFVTS 348 (372)
Q Consensus 276 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~------~~~~~t~ 348 (372)
+.+|+........ ++..-.........+.+.++| .+|+.+......... .....+.
T Consensus 339 ~~vyv~~~~~~~~-----------------~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~ 401 (488)
T cd00216 339 GLVYLGAFHIPLG-----------------LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS 401 (488)
T ss_pred ceEEEcccccccc-----------------CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence 7788865321000 000000001123468899999 569998876654111 0011234
Q ss_pred eEEECCEEEEEeCCCCeEEEEe
Q 017371 349 GLQVDNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 349 ~~~~~g~L~igs~~~~~i~~~~ 370 (372)
+...++.||+++.. ..|..++
T Consensus 402 ~~~~g~~v~~g~~d-G~l~ald 422 (488)
T cd00216 402 LATAGNLVFAGAAD-GYFRAFD 422 (488)
T ss_pred eEecCCeEEEECCC-CeEEEEE
Confidence 55667889999854 4565555
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0035 Score=55.89 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=100.1
Q ss_pred EecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-C-CceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-C-
Q 017371 72 KVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-E- 145 (372)
Q Consensus 72 ~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~- 145 (372)
..+.|.-....+|.+.|.+..+++. .|..|.-|| . .+-.......++| -.|+||+|-++.+..+. .|..+| +
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecc
Confidence 3445655567778888877777776 577777777 2 2222222333343 46899999888776554 566666 2
Q ss_pred --CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC-
Q 017371 146 --DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF- 220 (372)
Q Consensus 146 --~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~- 220 (372)
.| .+.+.-.. ......++|-+.+||+ |.+++ ..+-++.+|.=+|.+..-..+...
T Consensus 172 ~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT------------------~~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 172 FDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLST------------------NASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred cCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEe------------------CCCcEEEEEccCCcEeeeEeeccCC
Confidence 34 55553322 2345778999999996 55554 345678888766775554444333
Q ss_pred ---cceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 221 ---ANGVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 221 ---~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
|-...++||+++++. ...+++|..|+++..
T Consensus 232 ~~~~~~a~ftPds~Fvl~-gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLS-GSDDGTIHVWNLETG 264 (311)
T ss_pred CCcceeEEECCCCcEEEE-ecCCCcEEEEEcCCC
Confidence 336678999995554 456778999998643
No 80
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.98 E-value=0.01 Score=52.26 Aligned_cols=217 Identities=15% Similarity=0.165 Sum_probs=130.9
Q ss_pred cEEEEecCCeEEEEe-C------Cce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeecCCc
Q 017371 91 VIYTATRDGWIKRLQ-D------GTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGS 158 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~-~------g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~~~~ 158 (372)
.++-++.|..+..++ + |.+ +.+.--.-+.. +++..+||+..++....+ +..+| ..| .+.+. |.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~----GH 104 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV----GH 104 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEE----ec
Confidence 344445677777776 2 111 12211111234 888899999888765545 56677 666 23232 11
Q ss_pred ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEEEecCCCEEEEE
Q 017371 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~~~~dg~~l~v~ 236 (372)
....-.+++++|.+-.++- ..+..+..+|..++..-.+.++ -..-+-+.|+|.....++.
T Consensus 105 -~~dVlsva~s~dn~qivSG-----------------SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 105 -TKDVLSVAFSTDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred -CCceEEEEecCCCceeecC-----------------CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 1234578898988766753 3555677777653333223333 2344678899987445555
Q ss_pred eCCCCeEEEE-EccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccccccc
Q 017371 237 ESWKFRCRKY-WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 315 (372)
Q Consensus 237 ~~~~~~i~~~-~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~ 315 (372)
..+.++..++ ++++-+... .+. ...++..-+++.+||.+-.+...
T Consensus 167 s~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcasGgk------------------------------- 212 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCASGGK------------------------------- 212 (315)
T ss_pred EccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence 5555555554 554432221 222 24456778999999999887543
Q ss_pred CCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371 316 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 316 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~ 372 (372)
.+.++-.| .+|+-++++.. +..+.++++..++.|++-..+..|-+++++
T Consensus 213 ---dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 213 ---DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ---CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEecc
Confidence 34444444 35666665543 235788888999999999999999998875
No 81
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.97 E-value=0.0029 Score=60.13 Aligned_cols=222 Identities=18% Similarity=0.182 Sum_probs=120.5
Q ss_pred EEcCCCcEEEEecCCeEEEEe-CCceEEEEecCC----CcccCeEEcCCCCEEEEeCCCcEEEEcC-CCcEEEeeecCCc
Q 017371 85 SMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDS----QTLVGLTSTKEGHLIICDNANGLHKVSE-DGVENFLSYVNGS 158 (372)
Q Consensus 85 ~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~----~p~~gl~~d~dG~l~v~~~~~gv~~~~~-~g~~~l~~~~~~~ 158 (372)
.++.+|++|++..+|.|+.++ ++....|..... ... +-.+..+|+||+++...-++.+|. +|...+.....+.
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 366689999999999999999 332223433222 222 333334899999986544899994 7833333332331
Q ss_pred ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-----ccCcceEEEecCCCEE
Q 017371 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYV 233 (372)
Q Consensus 159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-----~~~~~gi~~~~dg~~l 233 (372)
.. ..+-.+-.++.+|+.. .++.++.+|.++|+..+.... ........ ..++ .+
T Consensus 143 -~~-~~~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~v 200 (370)
T COG1520 143 -PY-YASPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TV 200 (370)
T ss_pred -eE-EecCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eE
Confidence 11 1122444688888852 357899999998887664221 11112222 2334 47
Q ss_pred EEEeCC-CCeEEEEEccCCC-CcceeeeccCC------CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371 234 VVCESW-KFRCRKYWLKGER-KGKLETFAENL------PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 305 (372)
Q Consensus 234 ~v~~~~-~~~i~~~~~~g~~-~~~~~~~~~~~------~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~ 305 (372)
|+.... +..++.+++.... ..+........ ...-.+-.+..++.+|.+...
T Consensus 201 y~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~--------------------- 259 (370)
T COG1520 201 YVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYG--------------------- 259 (370)
T ss_pred EEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecC---------------------
Confidence 776553 4468888884332 11111000000 001122234445566666654
Q ss_pred cCccccccccCCCceEEEEEC-CCCcEEEEEECCCC-Ceec-cceeeEEECCEEEEEeCCCC
Q 017371 306 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTG-QLMS-FVTSGLQVDNHLYVISLTSN 364 (372)
Q Consensus 306 ~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g-~~~~-~~t~~~~~~g~L~igs~~~~ 364 (372)
+.+++++ ++|+.+..+..+.. .... ..+.....+|.+|+......
T Consensus 260 --------------g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~ 307 (370)
T COG1520 260 --------------GKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND 307 (370)
T ss_pred --------------CeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccc
Confidence 4588887 55999888877410 0011 12222223688888876544
No 82
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.96 E-value=0.0036 Score=56.69 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred EEEcCCCc-EEEEe-----cCCeEEEEe-CC---ceEEEEecCCCcccCeEEcCCC-CEEEEeCC---C-----------
Q 017371 84 ASMDKNGV-IYTAT-----RDGWIKRLQ-DG---TWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---N----------- 138 (372)
Q Consensus 84 i~~d~~G~-l~v~~-----~~g~i~~~~-~g---~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~---~----------- 138 (372)
-++++||+ ||++. ..|.|-.+| .. ++.+|...+-.|. -+.+.+|| .|.|++.+ +
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 45677885 55543 357888888 42 3455666666788 99999999 78888743 1
Q ss_pred ----cEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371 139 ----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (372)
Q Consensus 139 ----gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~ 211 (372)
.|..+| .+| ++...- .+.....++..|+++.+|.+|++-. |+-... ....-|...+.. +..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~L-p~~~~~lSiRHLa~~~~G~V~~a~Q---~qg~~~-------~~~PLva~~~~g-~~~ 202 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVEL-PPDLHQLSIRHLAVDGDGTVAFAMQ---YQGDPG-------DAPPLVALHRRG-GAL 202 (305)
T ss_pred hcCCceEEEecCCCceeeeeec-CccccccceeeEEecCCCcEEEEEe---cCCCCC-------ccCCeEEEEcCC-Ccc
Confidence 244454 445 222111 1122334788999999999999843 111110 011234445443 223
Q ss_pred EEEeC------Ccc-CcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 212 TLVAD------GFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 212 ~~~~~------~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
+.+.- .+. ..-.|+++++++.+.++.-..+++..++...
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 22211 111 1235889999998888887778888887654
No 83
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.0053 Score=60.63 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCC-----c---ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCC
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----T---LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG 157 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p---~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~ 157 (372)
+|.+|+++.+|.|+.+| +|+...-...... + ..++++..++.+|+++....|+.+| ++|..........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 68999999899999999 6654321111110 0 1133443238899987666789999 6783333222221
Q ss_pred c---ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371 158 S---KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (372)
Q Consensus 158 ~---~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~ 215 (372)
. .........++ ++.+|+......+ ......+.|+.+|.+||+..+..
T Consensus 141 ~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 141 QVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCceeeEe
Confidence 1 00011122343 3778876432111 00123578999999999877754
No 84
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=0.0015 Score=64.62 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=62.6
Q ss_pred CCeEEEEeCCC-----CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC------Ccceee-eccC-CC
Q 017371 198 HGQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKLET-FAEN-LP 264 (372)
Q Consensus 198 ~g~v~~~d~~t-----~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~------~~~~~~-~~~~-~~ 264 (372)
.++|..+|..+ .++......-..|.|++++|||+++|+++.....|..++....+ +..... ..+- +.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 45788999876 34555556678899999999999999999988999999986422 111111 1111 11
Q ss_pred CCCceeEEcCCCCEEEEEec
Q 017371 265 GAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 265 g~p~~i~~d~~G~lwva~~~ 284 (372)
-.|--.++|.+|+.|++..-
T Consensus 375 lGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CCcceEEECCCCCEEEeEee
Confidence 24888999999999999864
No 85
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.015 Score=56.41 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=94.1
Q ss_pred EEcCCCc----EEEEec--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEE--Ec-CC---
Q 017371 85 SMDKNGV----IYTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHK--VS-ED--- 146 (372)
Q Consensus 85 ~~d~~G~----l~v~~~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~--~~-~~--- 146 (372)
.+.|||. +|++.. ...|+..+ +|+.+.+....+... ..++.|||+ |.++.... .++. ++ ..
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 5677873 345543 34688888 566666655445555 778999995 44433211 2433 34 22
Q ss_pred C-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCeEEEEeCCccCcc
Q 017371 147 G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFAN 222 (372)
Q Consensus 147 g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~~~~~~~~~~~~~ 222 (372)
| .+.+..... ......++.+||+ |+++... .+...||.++.+ +++.+.+........
T Consensus 270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~ 330 (428)
T PRK01029 270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS 330 (428)
T ss_pred CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence 2 333322111 1223568899996 5554211 123468888754 233444433222334
Q ss_pred eEEEecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371 223 GVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
...|+|||+.++++... ...|+.+++++.+ ...+... .+...+....+||+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTS-PENKESPSWAIDSLH 384 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCC-CCCccceEECCCCCE
Confidence 57899999988877543 3578999987643 2223221 223456788889863
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.015 Score=52.03 Aligned_cols=232 Identities=13% Similarity=0.137 Sum_probs=133.0
Q ss_pred CCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceE-EEEecCCCcccCeEE-cCCCCEEEEeC--CCcEEEEc-CCC--c
Q 017371 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTS-TKEGHLIICDN--ANGLHKVS-EDG--V 148 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~-d~dG~l~v~~~--~~gv~~~~-~~g--~ 148 (372)
..+++|.++.+|...++. .+..|..|+ +|+.. .+...-=.+. -..+ .++..+.-+.. ...|..++ .+. +
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 368899999999777664 666788888 66533 3322100111 1223 23344333322 12355555 333 5
Q ss_pred EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~ 228 (372)
+.+ +|-. ..++.|.+.|-+..+++-+ .+..|..+|....+-.-+. .+..+.-.|++|
T Consensus 94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp 150 (311)
T KOG1446|consen 94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDP 150 (311)
T ss_pred EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECC
Confidence 544 3322 4677899999888888744 3456666776544443333 234455678999
Q ss_pred CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC--CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371 229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA 305 (372)
Q Consensus 229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~--~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~ 305 (372)
+|- ++.+..++..|.-|++..-..+....|.-+. ...-.+|.+.+||. |.+++..
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------------------- 208 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------------------- 208 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------------
Confidence 995 4445555558888988633233344443221 11235689999995 5665554
Q ss_pred cCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371 306 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 306 ~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~ 371 (372)
+.++.+| .+|.++..+...... ....-++.+. ++...+++....+|.++++
T Consensus 209 --------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 --------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred --------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 4566666 579988888664332 1122344443 5566666666677777664
No 87
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.90 E-value=0.0049 Score=55.25 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=79.6
Q ss_pred ceEEEec--CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371 222 NGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS 296 (372)
Q Consensus 222 ~gi~~~~--dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~ 296 (372)
.|+++.. .+++||.++..+.+|-+|+-.=.+......|.+. +|. -|-||. .-.|+|||+-....-..-|
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIq-nig~~lyVtYA~qd~~~~d----- 214 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQ-NLGGTLYVTYAQQDADRND----- 214 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceE-EECCeEEEEEEecCCcccc-----
Confidence 4677664 3679999999999999997432221111234332 222 366664 3457899986541100000
Q ss_pred hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE--E-----CCEEEEEeCCCCeEEEE
Q 017371 297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--V-----DNHLYVISLTSNFIGKV 369 (372)
Q Consensus 297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~-----~g~L~igs~~~~~i~~~ 369 (372)
-......|.|-.||.+|+.++.+.+. |. ++.+-.+.. . .|.|.||+.....|..+
T Consensus 215 ----------------~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF 276 (336)
T TIGR03118 215 ----------------EVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY 276 (336)
T ss_pred ----------------cccCCCcceEEEEcCCCcEEEEeccC-Cc-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence 01245578999999999999998653 32 555555544 1 38899999999999988
Q ss_pred eC
Q 017371 370 QL 371 (372)
Q Consensus 370 ~~ 371 (372)
|.
T Consensus 277 D~ 278 (336)
T TIGR03118 277 DP 278 (336)
T ss_pred cC
Confidence 74
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.0068 Score=61.25 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=93.1
Q ss_pred CCccEEEcCCC-cEEEEecCCeEEEEeCC----ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEe
Q 017371 80 HPEDASMDKNG-VIYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL 152 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~~g----~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~ 152 (372)
|=..|++|++| .|++.+.+|.|..++.+ +.+.+.. .+.+..+++.+. +.+..+...+-+.++. +++ ...+.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc-cceEEeeccceEEEeeCCCCCcccee
Confidence 45679999988 56666689988888822 2333322 233333777653 4555555555677776 555 43333
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCC
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDED 231 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~ 231 (372)
..+.. ..+.++++.+|+..+.-+ .+-.|-.++.++...+....+...|+ ++.++|.++
T Consensus 93 ~Rftl----p~r~~~v~g~g~~iaags-----------------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 93 ARFTL----PIRDLAVSGSGKMIAAGS-----------------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eeeec----cceEEEEecCCcEEEeec-----------------CceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence 33221 346889999997555422 23346666766666666677777665 688999999
Q ss_pred EEEEEeCCCCeEEEEEccCC
Q 017371 232 YVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~ 251 (372)
+|-++. .++.|+.|++...
T Consensus 152 fLAvss-~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 152 FLAVSS-CDGKVQIWDLQDG 170 (933)
T ss_pred EEEEEe-cCceEEEEEcccc
Confidence 666665 4667999988754
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.88 E-value=0.0067 Score=56.43 Aligned_cols=190 Identities=15% Similarity=0.184 Sum_probs=114.1
Q ss_pred cccCeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371 119 TLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 194 (372)
Q Consensus 119 p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~ 194 (372)
|..++...+.|..++.....|-+.+. .+| ..+......+ -.....++.|||.|+.+
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgt----------------- 364 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGT----------------- 364 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEec-----------------
Confidence 33488888999877776666766665 566 4433322111 12446789999999886
Q ss_pred ccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371 195 GKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d 273 (372)
+..++.|-.+|.+.+....-+.+...| ..+.|+..|- .+++......|..+|+. |......+.....-....+.+|
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEeh--hhcccceeeccccccceeEEEc
Confidence 346777888887655422222222222 3578887774 44555555568888875 3334444432111124568899
Q ss_pred CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC---CcEEEEEECCCCCeeccceeeE
Q 017371 274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED---GTIIRNLVDPTGQLMSFVTSGL 350 (372)
Q Consensus 274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~---g~~~~~~~~~~g~~~~~~t~~~ 350 (372)
..|.+.+.... .-.|+.+... -+.+..+++-.| ..+.+.
T Consensus 442 ~SGt~L~~~g~----------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~ 483 (506)
T KOG0289|consen 442 QSGTYLGIAGS----------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVR 483 (506)
T ss_pred CCCCeEEeecc----------------------------------eeEEEEEecccccceeeehhhhccc----ccceee
Confidence 99977666644 3467777633 223444444444 367788
Q ss_pred EECCEEEEEeCCCCeEEEE
Q 017371 351 QVDNHLYVISLTSNFIGKV 369 (372)
Q Consensus 351 ~~~g~L~igs~~~~~i~~~ 369 (372)
+.+..-|+++-..+.+-++
T Consensus 484 Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ecccceEEeeccchhheEE
Confidence 8777788888777776443
No 90
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.012 Score=57.67 Aligned_cols=179 Identities=16% Similarity=0.227 Sum_probs=106.5
Q ss_pred CccEEEcCCCcEEEEe-cCCeEEEEe--CCc---eEEEEecCC-CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---c
Q 017371 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGT---WVNWKFIDS-QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V 148 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~---~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---~ 148 (372)
-.++.+.++|...++. .++.+..++ .++ .... .... ... ++++.+||...++... ..+..++ ++. .
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-ccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 3446677888665544 566555555 222 1111 1112 234 8999999987776554 4466666 333 3
Q ss_pred EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEe
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALS 227 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~ 227 (372)
+++. +- ...++.+++.++|++.++-+ .++.|..+|..+++......+.. .-++++++
T Consensus 240 ~~l~----gH-~~~v~~~~f~p~g~~i~Sgs-----------------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 240 KTLK----GH-STYVTSVAFSPDGNLLVSGS-----------------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred EEec----CC-CCceEEEEecCCCCEEEEec-----------------CCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 4332 11 13568999999998888733 56778888888777666555443 45678899
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+|++.++.+ +.++.|..|++.+....-.+.+... .+.....+.++++|.+.+....
T Consensus 298 ~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 298 PDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred CCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 999866555 5577788888765431101112111 1111356778899965555444
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.85 E-value=0.0096 Score=53.27 Aligned_cols=172 Identities=17% Similarity=0.067 Sum_probs=100.2
Q ss_pred ccEEEcCCCcEEEEe--cCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCC---CEEEEeCCCc-EEEEcCCC-cEEE
Q 017371 82 EDASMDKNGVIYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANG-LHKVSEDG-VENF 151 (372)
Q Consensus 82 ~~i~~d~~G~l~v~~--~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG---~l~v~~~~~g-v~~~~~~g-~~~l 151 (372)
.++|++ | .|+++ .|-.|..|| .. +...+....+... .+.|++.- .|.-+. ..| +..++ .| .+.+
T Consensus 47 tavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~-~~~W~~~ 120 (362)
T KOG0294|consen 47 TALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWR-VGSWELL 120 (362)
T ss_pred eEEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEE-cCCeEEe
Confidence 346664 3 45544 678899998 22 3333444455666 77777544 455543 344 44444 33 4333
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~ 231 (372)
... -+-. ..+++|++.|.|+|-++.. +++.+.-+|.-+|+.-.+..--..+.-+.|++.|.
T Consensus 121 ~sl-K~H~-~~Vt~lsiHPS~KLALsVg-----------------~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 121 KSL-KAHK-GQVTDLSIHPSGKLALSVG-----------------GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred eee-cccc-cccceeEecCCCceEEEEc-----------------CCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 221 2211 2488999999999998754 34555556666665554443334455688999999
Q ss_pred EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
++++... ++|-.|.++..+... ... .+..+.++..+..+.+.|+...
T Consensus 182 ~F~v~~~--~~i~i~q~d~A~v~~---~i~-~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 182 HFVVSGR--NKIDIYQLDNASVFR---EIE-NPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEEec--cEEEEEecccHhHhh---hhh-ccccceeeeecCCceEEEecCC
Confidence 8888754 567777765432221 111 1233566777777777777654
No 92
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0048 Score=54.97 Aligned_cols=183 Identities=11% Similarity=0.127 Sum_probs=108.0
Q ss_pred CeEEcCCCC-EEEEe-CCCcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371 122 GLTSTKEGH-LIICD-NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 122 gl~~d~dG~-l~v~~-~~~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
+|.++|+-+ ||.+. ....++.++.+| ++.++ -..++-+.+|..-.+|+.-++|. .
T Consensus 90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP----L~g~~DpE~Ieyig~n~fvi~dE-----------------R 148 (316)
T COG3204 90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP----LTGFSDPETIEYIGGNQFVIVDE-----------------R 148 (316)
T ss_pred ceeeCCCcceEEEecCCCceEEEEecCCceEEEec----ccccCChhHeEEecCCEEEEEeh-----------------h
Confidence 899998875 55443 224588888777 55442 22356677888877777777764 2
Q ss_pred CCeE--EEEeCCCCeEEE-----EeCC----ccCcceEEEecCCCEEEEEeCCC-CeEEEEEccCCCCcc---------e
Q 017371 198 HGQL--LKYDPSSNITTL-----VADG----FYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGK---------L 256 (372)
Q Consensus 198 ~g~v--~~~d~~t~~~~~-----~~~~----~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~g~~~~~---------~ 256 (372)
..++ +.+|+++..... -... -..-.|+++++++..||++.-.+ .+|+.++..-..... .
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 3334 445554322111 1111 12234899999998899886533 456655532111110 0
Q ss_pred eeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEE
Q 017371 257 ETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL 335 (372)
Q Consensus 257 ~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 335 (372)
..|... ..++.+|+ .|++.|-+.. ...+++++.+|+++..+
T Consensus 229 ~~f~~D----vSgl~~~~~~~~LLVLS~E----------------------------------Sr~l~Evd~~G~~~~~l 270 (316)
T COG3204 229 DLFVLD----VSGLEFNAITNSLLVLSDE----------------------------------SRRLLEVDLSGEVIELL 270 (316)
T ss_pred ceEeec----cccceecCCCCcEEEEecC----------------------------------CceEEEEecCCCeeeeE
Confidence 111111 35677775 4567776665 46899999999987766
Q ss_pred ECCCC---C--eeccceeeEEE-CCEEEEEeCCC
Q 017371 336 VDPTG---Q--LMSFVTSGLQV-DNHLYVISLTS 363 (372)
Q Consensus 336 ~~~~g---~--~~~~~t~~~~~-~g~L~igs~~~ 363 (372)
..-.| . ..+...+++.+ +|.|||.|--+
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 44333 1 23456777776 49999998543
No 93
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.82 E-value=0.0081 Score=54.28 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=114.9
Q ss_pred cEEEEe-cCCeEEEEe---CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-----------cEEE-ee
Q 017371 91 VIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-----------VENF-LS 153 (372)
Q Consensus 91 ~l~v~~-~~g~i~~~~---~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-----------~~~l-~~ 153 (372)
.|.+++ ..|+++.+. +|..........+|. ||+..+ ++||++... .|.++- .+. -..+ +.
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr 95 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPR 95 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeee
Confidence 455555 556666654 566666666778899 999974 689998754 588872 111 1111 11
Q ss_pred --ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE----------eCCccCc
Q 017371 154 --YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFA 221 (372)
Q Consensus 154 --~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~----------~~~~~~~ 221 (372)
...| ...+++|++ .++.+||.+. .-..|..+++. ..+... .++-..-
T Consensus 96 ~~~~TG--didiHdia~-~~~~l~fVNT-----------------~fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHL 154 (335)
T TIGR03032 96 ASYVTG--DIDAHDLAL-GAGRLLFVNT-----------------LFSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHL 154 (335)
T ss_pred eeeecc--Ccchhheee-cCCcEEEEEC-----------------cceeEEEECCC-CccccccCCccccccCccCceee
Confidence 0111 235668888 6778888765 23467777764 333221 1122345
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-------eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371 222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 294 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~ 294 (372)
||+|+. ||+--||+-.+...+..-|-++...+. -+...+.+ .+|.+.+.- +|+||+.+..
T Consensus 155 NGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GL-smPhSPRWh-dgrLwvldsg---------- 221 (335)
T TIGR03032 155 NGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGL-SMPHSPRWY-QGKLWLLNSG---------- 221 (335)
T ss_pred cceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCc-cCCcCCcEe-CCeEEEEECC----------
Confidence 899985 677788765433212111111111111 12222222 356666653 5899999988
Q ss_pred cchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEECCEEEEEe
Q 017371 295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 360 (372)
Q Consensus 295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs 360 (372)
.+.+.++|++ |+......-| | .+.++...++.+++|-
T Consensus 222 ------------------------tGev~~vD~~~G~~e~Va~vp-G----~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 222 ------------------------RGELGYVDPQAGKFQPVAFLP-G----FTRGLAFAGDFAFVGL 259 (335)
T ss_pred ------------------------CCEEEEEcCCCCcEEEEEECC-C----CCcccceeCCEEEEEe
Confidence 6899999986 8776655554 3 2444555555555544
No 94
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.013 Score=57.37 Aligned_cols=151 Identities=15% Similarity=0.212 Sum_probs=99.9
Q ss_pred CCCCCCccEEEcCCCcEEE-EecCCeEEEEe---CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-
Q 017371 76 GSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ---DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG- 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~---~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g- 147 (372)
|.-....++++.++|...+ +..|+.|..|+ ++. .+++..-....+ +++|.++|++.+.... .-+..++ +.|
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 4445667789999996444 44788888888 333 344443334456 9999999987777555 4477777 666
Q ss_pred -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE--EEeCCccCc---
Q 017371 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFA--- 221 (372)
Q Consensus 148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~--~~~~~~~~~--- 221 (372)
.+.+.... ..+..+++.++|++.++-+ .++.|..+|..+++.. ........+
T Consensus 280 ~~~~l~~hs-----~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 280 CVRKLKGHS-----DGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred EEEeeeccC-----CceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCce
Confidence 55553321 2567889999999887642 5788999999888832 333344444
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 222 NGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.-+.++|++++++.... +..+..+++..
T Consensus 338 ~~~~fsp~~~~ll~~~~-d~~~~~w~l~~ 365 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASL-DRTLKLWDLRS 365 (456)
T ss_pred eEEEECCCCcEEEEecC-CCeEEEEEccC
Confidence 56789999997776643 44565566653
No 95
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.79 E-value=0.023 Score=50.44 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=142.3
Q ss_pred EecCCCCCCCccEEEcCCCcEEE-EecCCeEEEEe---CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-C--cEEEEc
Q 017371 72 KVGEGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-N--GLHKVS 144 (372)
Q Consensus 72 ~~~~g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~---~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~--gv~~~~ 144 (372)
++..|.+...-++-..+|.+..+ ++.||++..|| .++...+..+..-.. ..|+.|.|+...+..- + -|+.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence 44456666666777777775554 55899999999 455555555555666 8899999996555322 2 255555
Q ss_pred -C--CCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cC
Q 017371 145 -E--DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YF 220 (372)
Q Consensus 145 -~--~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~ 220 (372)
+ +|.......+.+-. .+.....+-+|++|.-+ .++.....+|.++++......+. ..
T Consensus 128 ~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~------------------SGD~TCalWDie~g~~~~~f~GH~gD 188 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTG------------------SGDMTCALWDIETGQQTQVFHGHTGD 188 (343)
T ss_pred cccccccceeeeeecCcc-ceeEEEEEcCCCceEec------------------CCCceEEEEEcccceEEEEecCCccc
Confidence 3 34222222223321 24445555557776542 24556677787777766655442 22
Q ss_pred cceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhH
Q 017371 221 ANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 299 (372)
Q Consensus 221 ~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~ 299 (372)
--++.++| +++ .|++..-+..-..+++..+ .-...|..+ ..-.+.+++-|+|.-+++...
T Consensus 189 V~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGSD--------------- 249 (343)
T KOG0286|consen 189 VMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGSD--------------- 249 (343)
T ss_pred EEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecCC---------------
Confidence 34677888 776 7777654444444454332 223445422 233567888888887777665
Q ss_pred HHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371 300 KHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 300 r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~ 370 (372)
.+....|| ...+.+..|..+ .. ...++++.+. .|+|.++.+....+.++|
T Consensus 250 -------------------D~tcRlyDlRaD~~~a~ys~~-~~-~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 250 -------------------DATCRLYDLRADQELAVYSHD-SI-ICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred -------------------CceeEEEeecCCcEEeeeccC-cc-cCCceeEEEcccccEEEeeecCCceeEee
Confidence 44555566 335556666643 22 4567888886 588888877766665554
No 96
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.0034 Score=59.19 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=45.8
Q ss_pred cCcceEEEecCC------CEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371 219 YFANGVALSRDE------DYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 219 ~~~~gi~~~~dg------~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~ 284 (372)
..|.|++|.... +.++|...+.-.+.+...++...-..+.|... ..+.|.++++++||.|++++..
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 346677776421 34888887776788877776533333444432 3478999999999999999876
No 97
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.77 E-value=0.0035 Score=54.28 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=118.3
Q ss_pred cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 97 ~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
.|..|..+. .|. .+++....+..+ .|.+.||++...+....-|..+| .++ ..++.+. ++.. +.+..+.|..|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~h~-kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EGHT-KNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-eccC-CceEEEEEeec
Confidence 677777777 665 566777778888 99999999876665555577777 444 3333221 2221 23456777788
Q ss_pred CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
|+-.+| +..+|.+-..|...-..........--|.+.++|.+..|++++. ++.|+.+++...
T Consensus 95 grWMyT-----------------gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 GRWMYT-----------------GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGEN 156 (311)
T ss_pred CeEEEe-----------------cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCC
Confidence 874444 23566666667654333333333333478999999988988875 456888888543
Q ss_pred CCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch-hHHHHhhcchhHHHHHHhcCccccc---cccCCCceEEEEECC
Q 017371 252 RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSSKLIKHVLAAYPKLFSQ---FITLGGGAHLIHVAE 327 (372)
Q Consensus 252 ~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~-~~~~~~~~~~~~r~~~~~~p~~~~~---~~~~~~~~~v~~~~~ 327 (372)
.-. .+...+ .......+.+++||.+.+|.....+ -.++++.. ..-..+.| +.+...++.--+++|
T Consensus 157 ~c~-~~liPe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~---------~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 157 SCT-HELIPE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH---------QTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred ccc-cccCCC-CCcceeeEEEcCCCcEEEEecCCccEEEEEccCC---------CccccceEhhheecccceEEEEEECC
Confidence 111 111111 1122456777888877777654221 12222210 00011111 233566666677788
Q ss_pred CCcEEEE
Q 017371 328 DGTIIRN 334 (372)
Q Consensus 328 ~g~~~~~ 334 (372)
++|.+..
T Consensus 226 d~k~lat 232 (311)
T KOG0315|consen 226 DVKYLAT 232 (311)
T ss_pred CCcEEEe
Confidence 8877653
No 98
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.73 E-value=0.006 Score=60.47 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCccEEEcCCCcEEEEe-cCCeEEEEe--C-CceEEEEecCCCcccCeEEcCCCCEEEEeCCC--cEEEEc-CCC--cEE
Q 017371 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--GLHKVS-EDG--VEN 150 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~-g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~--gv~~~~-~~g--~~~ 150 (372)
+...+.+...|+..++. -||.|..|| . ...+++..+...-...+++||.|.|.++.... .++.++ .+| +.+
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 44456666677655554 688888888 2 24555544322223378999999988875442 578888 778 333
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe--CCCCeEEEEeCCccCcceEEEec
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD--PSSNITTLVADGFYFANGVALSR 228 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d--~~t~~~~~~~~~~~~~~gi~~~~ 228 (372)
| ...+| .+.++.++++|.+.++-+ .+..|..+| ...++++.+. -....-++++.|
T Consensus 474 L-sGHEg----PVs~l~f~~~~~~LaS~S-----------------WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP 530 (893)
T KOG0291|consen 474 L-SGHEG----PVSGLSFSPDGSLLASGS-----------------WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP 530 (893)
T ss_pred h-cCCCC----cceeeEEccccCeEEecc-----------------ccceEEEEEeeccCceeeeEe-eccceeEEEEcC
Confidence 3 33233 356889999999887643 233344433 2335666543 223455789999
Q ss_pred CCCEEEEEeCCCCeEEEEEccCC-CCcce-------------eeeccC---CCCCCceeEEcCCCCEEEEEec
Q 017371 229 DEDYVVVCESWKFRCRKYWLKGE-RKGKL-------------ETFAEN---LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 229 dg~~l~v~~~~~~~i~~~~~~g~-~~~~~-------------~~~~~~---~~g~p~~i~~d~~G~lwva~~~ 284 (372)
||+.+-|+.. ++.|..|+.+.. ..+.. +.+... ....-..|+...||+..++...
T Consensus 531 dG~elaVaTl-dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 531 DGKELAVATL-DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred CCCeEEEEEe-cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 9998888764 456777776422 11111 111111 0011235888999988887654
No 99
>PRK13684 Ycf48-like protein; Provisional
Probab=97.73 E-value=0.041 Score=51.48 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecC---CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEe
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFL 152 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~---~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~ 152 (372)
...+|++..+.+.|+....|.|++-. .| .++...... ..+...++++. ++.|++.....+++-...| .+.+.
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~ 125 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP 125 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence 34456666555656544567777765 33 355432211 12222777763 4577775444455544444 44432
Q ss_pred ee--cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecC
Q 017371 153 SY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRD 229 (372)
Q Consensus 153 ~~--~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~d 229 (372)
.. .++ .+..+....++.+|+.. ..|.|++=+-.....+.+..+. ..-+++.+.++
T Consensus 126 ~~~~~~~----~~~~i~~~~~~~~~~~g------------------~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~ 183 (334)
T PRK13684 126 LSEKLPG----SPYLITALGPGTAEMAT------------------NVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD 183 (334)
T ss_pred CCcCCCC----CceEEEEECCCcceeee------------------ccceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence 21 122 12233333334455532 3466776654434455443332 22356777787
Q ss_pred CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+..+ +... +..+++-.-++.+ ..+...........++.+.++|++|+....
T Consensus 184 g~~v-~~g~-~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 184 GKYV-AVSS-RGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred CeEE-EEeC-CceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 7533 3332 3345553223321 111111112223567788888999887654
No 100
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.011 Score=50.12 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=35.0
Q ss_pred CCeEEEEeCCCCeEEEEeC-------------CccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371 198 HGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCESWKFRCRKY 246 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 246 (372)
+.+|.|+||++|++....+ ...-.||||..++++.+|++.-.-..++-+
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence 3579999999998876532 223579999999998899986543344433
No 101
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.022 Score=52.02 Aligned_cols=152 Identities=12% Similarity=0.110 Sum_probs=93.8
Q ss_pred EEecCCCcccCeEEcCCCCEEEEeCC--CcEEEEc-CCC-cEEEe-eecCCcccccccceEEccCCcEEEEeCCCCCCCc
Q 017371 112 WKFIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPH 186 (372)
Q Consensus 112 ~~~~~~~p~~gl~~d~dG~l~v~~~~--~gv~~~~-~~g-~~~l~-~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~ 186 (372)
+..++..|...|...+||..|++.+. ..+..++ ..| ...+. ... ....-+...|||..+|+..
T Consensus 190 l~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-----gg~slLkwSPdgd~lfaAt------- 257 (445)
T KOG2139|consen 190 LQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-----GGFSLLKWSPDGDVLFAAT------- 257 (445)
T ss_pred eeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-----CceeeEEEcCCCCEEEEec-------
Confidence 44455566668899999999888554 3577888 556 44443 221 2334577899998777643
Q ss_pred ccccccccccCCCeEEEEeC--CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCC------c--ce
Q 017371 187 EYCLDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK------G--KL 256 (372)
Q Consensus 187 ~~~~~~~~~~~~g~v~~~d~--~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~------~--~~ 256 (372)
.+ +++++=. .+...+....+-..-.+-+++|+|++|+++-++..+|+....+++.. + ..
T Consensus 258 ----------~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 258 ----------CD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred ----------cc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceee
Confidence 22 2333321 11222223333335567789999999999999999999887665311 0 11
Q ss_pred eeeccC-----------CCCCCceeEEcCCCCEEEEEecCc
Q 017371 257 ETFAEN-----------LPGAPDNINLAPDGTFWIAIIKLD 286 (372)
Q Consensus 257 ~~~~~~-----------~~g~p~~i~~d~~G~lwva~~~~~ 286 (372)
....+. ..|.+..++.|+.|+..+......
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 111110 134577899999998888887643
No 102
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.67 E-value=0.029 Score=54.53 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=84.8
Q ss_pred eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
.|+.+| +|. .+.+........ ...+.|||+ |..+... ..|+.++ .+| .+.+.. ..+ ....+++.+|
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence 455555 443 222222222334 889999996 3333222 2378888 556 444432 222 1235789999
Q ss_pred Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL 248 (372)
Q Consensus 172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~ 248 (372)
|+ |+++-.. .+.-.||.+|.++++.+.+..........+|+|||+.++++.. +..+|+.++.
T Consensus 259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 96 5554211 1233689999887877666544334457889999998887653 3346777766
Q ss_pred cCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371 249 KGERKGKLETFAENLPGAPDNINLAPDGTFW 279 (372)
Q Consensus 249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 279 (372)
.+... ... . ..+ .+..+.+||+..
T Consensus 324 ~~~~~---~~l-~-~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 324 SGGGA---SLV-G-GRG--YSAQISADGKTL 347 (429)
T ss_pred CCCCe---EEe-c-CCC--CCccCCCCCCEE
Confidence 54321 222 1 112 245677888643
No 103
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.66 E-value=0.047 Score=52.20 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=100.0
Q ss_pred CccEEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEe---cCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cE
Q 017371 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKF---IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VE 149 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~---~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~ 149 (372)
..++-+.|||..+++. .||+|+.|| +|+ +..+.. --|..+ +|.+.||+.-+++ ..+.-+..+| .++ ++
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 5568888999988877 899999999 554 333431 224456 8888888864444 3334444555 333 33
Q ss_pred EEeee--cCCc------------------------------------ccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371 150 NFLSY--VNGS------------------------------------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (372)
Q Consensus 150 ~l~~~--~~~~------------------------------------~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~ 191 (372)
.+... .+.. -.+.+..+++.+||+-.
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i---------------- 335 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI---------------- 335 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE----------------
Confidence 33211 0000 01122233333444322
Q ss_pred cccccCCCeEEEEeCCCCeEEEEeCCcc--CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce
Q 017371 192 ILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 269 (372)
Q Consensus 192 ~~~~~~~g~v~~~d~~t~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~ 269 (372)
+.+.-+|.|..++..+|..-.+....+ .-.+++.+..+. ++.+. .++.|.++.+.+......+.+ .+...|-+
T Consensus 336 -~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~ 410 (603)
T KOG0318|consen 336 -YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDNGYTKSEVV--KLGSQPKG 410 (603)
T ss_pred -EeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccCccccccee--ecCCCcee
Confidence 234456788888876665444321111 223555554343 55554 577899998865433333322 24446889
Q ss_pred eEEcCCCC-EEEEEec
Q 017371 270 INLAPDGT-FWIAIIK 284 (372)
Q Consensus 270 i~~d~~G~-lwva~~~ 284 (372)
+++.++|. +-+++..
T Consensus 411 lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACIS 426 (603)
T ss_pred EEEcCCCCEEEEEecC
Confidence 99999985 5555544
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.011 Score=55.34 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=130.3
Q ss_pred EEEcCCCc--EEEEecCCeEEEEe--CCceEEEEecCCCcc---cCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEe
Q 017371 84 ASMDKNGV--IYTATRDGWIKRLQ--DGTWVNWKFIDSQTL---VGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFL 152 (372)
Q Consensus 84 i~~d~~G~--l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~---~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~ 152 (372)
..+.++|. ++++...-.+|.|| ..++..+..+.+..- --+.+.++++..+.....| |+.+. .++ +..+.
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence 44556774 55555566677888 667776665555431 1345667887544443344 44444 444 33221
Q ss_pred eecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeCCccCcceEEEecC
Q 017371 153 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRD 229 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~~~~~~~gi~~~~d 229 (372)
.+| .+.++++++||+ ||++. +.|.||.+|........ ..++-.....+|.+.+
T Consensus 343 --ieG----~v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 343 --IEG----VVSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred --ecc----EEeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 122 456788989985 55542 56789999986543322 3344445567888899
Q ss_pred CCEEEEEeCCCCeEEEEEccCCCCcc-eeee--ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371 230 EDYVVVCESWKFRCRKYWLKGERKGK-LETF--AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 306 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~--~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~ 306 (372)
+. ++.+.+..+-|-.|+.+....+. .... .+++..-.+.|.+.+|+.|..-+...
T Consensus 399 g~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~--------------------- 456 (514)
T KOG2055|consen 399 GS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV--------------------- 456 (514)
T ss_pred Cc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc---------------------
Confidence 97 44555555556677755432221 1111 12333346678888888654333220
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371 307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~ 371 (372)
....-+++.+ |.-++..+|..+... +..++++.+. +|.|-+|+-. .++..++|
T Consensus 457 ---------~knalrLVHv-PS~TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGNe~-grv~l~kL 511 (514)
T KOG2055|consen 457 ---------KKNALRLVHV-PSCTVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGNEA-GRVHLFKL 511 (514)
T ss_pred ---------cccceEEEec-cceeeeccCCCCCCc-ccceEEEEecCCCceEEeecCC-CceeeEee
Confidence 1112233333 455666667666444 7789999986 5889998854 45555544
No 105
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.61 E-value=0.027 Score=56.07 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=65.3
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCC-----c-------ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEee
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----T-------LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS 153 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p-------~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~ 153 (372)
+|.||+++.++.|+.+| +|+.. |...... + ..++++. ++++|+++....|+.+| .+|......
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~l-W~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKEL-WKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCcee-eEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 68999999889999999 66533 2221110 0 1144554 57899988777799999 778333222
Q ss_pred ecCCcc--cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371 154 YVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (372)
Q Consensus 154 ~~~~~~--~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~ 215 (372)
...... ......-.+ .+|.||+...+..+ ...|.|+.+|.+||+..+..
T Consensus 147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeEec
Confidence 211100 000111112 26788887543211 24678999999888877643
No 106
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.58 E-value=0.0032 Score=59.14 Aligned_cols=181 Identities=14% Similarity=0.211 Sum_probs=113.2
Q ss_pred CCccEEEcCCCcEEE-EecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcEEEEc-CCC--cEEE
Q 017371 80 HPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-EDG--VENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv~~~~-~~g--~~~l 151 (372)
....+.+..+|.=+. +..|..|.-|| .|+...--.....|. .+.+.||+ +++++... ..|..+| .+| ++.+
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 455677777785444 44788888888 666544333444566 88888888 77776544 5688999 776 3322
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeC-CccCcceEEEecC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VAD-GFYFANGVALSRD 229 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~-~~~~~~gi~~~~d 229 (372)
. ..+..+++|.+-++|+=+|+.+. ...+..++-....... ++. ....--.+.++|.
T Consensus 339 d-----~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 339 D-----RHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN 396 (503)
T ss_pred H-----hhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence 1 22356788999999988887542 2234444432222111 111 1111225778898
Q ss_pred CCEEEEEeCCCCeEEEEEccCC-CCcceeeecc-CCCCCCceeEEcCCCCEEEEEec
Q 017371 230 EDYVVVCESWKFRCRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
++ .+.+.+..++|..|..... +....+.|.. ..+|++-.+.+.+||.+.++..+
T Consensus 397 ~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 397 GK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred CC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 87 7778888899999876543 2223334432 25688889999999988877666
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.041 Score=49.44 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=100.0
Q ss_pred CccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEee
Q 017371 81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLS 153 (372)
Q Consensus 81 p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~ 153 (372)
.+++-+.+.| .|-+|..+|+|.-|| +-.+.......-+|..++++.+||+..++.+. ..+..+| .+| ...+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 7888898888 456777999999998 32232222222356658999999988877543 3455555 444 222110
Q ss_pred --ecCCc-------------cc-ccccc----------eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371 154 --YVNGS-------------KL-RFAND----------VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207 (372)
Q Consensus 154 --~~~~~-------------~~-~~~~~----------l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 207 (372)
..-+. .+ ..|.= +..|++|.+=.+.+..- .+.....+..+...|.+..||.+
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~--fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV--FDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc--ccCCCCEEEEecCcceEEEEecc
Confidence 00000 00 00111 11122222211111000 11112234456678899999987
Q ss_pred CCeEEEEe--CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC---C-CCccee---eeccCCCC-CCceeEEcCCCC
Q 017371 208 SNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG---E-RKGKLE---TFAENLPG-APDNINLAPDGT 277 (372)
Q Consensus 208 t~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g---~-~~~~~~---~~~~~~~g-~p~~i~~d~~G~ 277 (372)
|-+..--. +....-..+.++..|+ .++.++.+.-|..|++.. . +.+..+ .+.+.... .=..++++.+|.
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 54332111 1112234577888887 555566565566676541 1 112222 11110000 114588899998
Q ss_pred EEEEEec
Q 017371 278 FWIAIIK 284 (372)
Q Consensus 278 lwva~~~ 284 (372)
+-+|...
T Consensus 263 Yv~a~s~ 269 (405)
T KOG1273|consen 263 YVCAGSA 269 (405)
T ss_pred EEEeccc
Confidence 7777654
No 108
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.55 E-value=0.024 Score=52.89 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=95.9
Q ss_pred CCCccEEEc-CCCcEEEEecCCe------EEEEe-C---Cc---eE-----EEEecCC--------CcccCeEEcCCCCE
Q 017371 79 NHPEDASMD-KNGVIYTATRDGW------IKRLQ-D---GT---WV-----NWKFIDS--------QTLVGLTSTKEGHL 131 (372)
Q Consensus 79 ~~p~~i~~d-~~G~l~v~~~~g~------i~~~~-~---g~---~~-----~~~~~~~--------~p~~gl~~d~dG~l 131 (372)
-+=.+|..+ .+|.+|.-+.+|. ++.+. . +. ++ .+....+ ++- ||++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCCE
Confidence 344678888 5667776666666 77665 2 11 11 1112222 345 8999889999
Q ss_pred EEEeCCC-------cEEEEcCCC--cEEEe--eec-------C-CcccccccceEEccCCc-EEEEeCCCCCCCcccccc
Q 017371 132 IICDNAN-------GLHKVSEDG--VENFL--SYV-------N-GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLD 191 (372)
Q Consensus 132 ~v~~~~~-------gv~~~~~~g--~~~l~--~~~-------~-~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~ 191 (372)
||++.+. .|++++.+| .+.+. ... . -.......+|++.+||+ ||+...+...+-.... .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~-~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA-N 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc-c
Confidence 9997543 588899667 34332 211 1 12334667899999998 8988665322111000 0
Q ss_pred cccccCCCeEEEEeCCCCe--EEEE---eC------CccCcceEEEecCCCEEEEEeCC-------CCeEEEEEccC
Q 017371 192 ILEGKPHGQLLKYDPSSNI--TTLV---AD------GFYFANGVALSRDEDYVVVCESW-------KFRCRKYWLKG 250 (372)
Q Consensus 192 ~~~~~~~g~v~~~d~~t~~--~~~~---~~------~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~g 250 (372)
......-+|++||+.+.. ...+ .+ ....+..++.-+|++ ++|.+.. ..+|+++++.+
T Consensus 178 -~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 178 -PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred -cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccc
Confidence 011122578999987522 2221 12 123334466667776 8888875 34677777653
No 109
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.53 E-value=0.051 Score=47.29 Aligned_cols=176 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred cEEEcCCCcEEEEecCCeEEEEe--CCc---eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEee
Q 017371 83 DASMDKNGVIYTATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLS 153 (372)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~ 153 (372)
-+.+.+++....+...-.|..|| .++ +..+........ .+.|-.||+..++....|..++ | +.- .+.+.
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~- 122 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ- 122 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhcc-
Confidence 36777777655554444566666 333 334444444555 7778888987666666665554 3 321 11111
Q ss_pred ecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE--EEEeCCccCcceEEEecCC
Q 017371 154 YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRDE 230 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~--~~~~~~~~~~~gi~~~~dg 230 (372)
. ...+|.+...++ +.|+++|. +|.|...|...... +.+.+...+-..+.+.+||
T Consensus 123 ---~--~spVn~vvlhpnQteLis~dq------------------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 123 ---H--NSPVNTVVLHPNQTELISGDQ------------------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred ---C--CCCcceEEecCCcceEEeecC------------------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence 1 124577888875 56777654 56777777754422 2233444555678999999
Q ss_pred CEEEEEeCCCCeEEEEEccCCC-Ccceeeec--cCCCCCCceeEEcCCCCEEEEEec
Q 017371 231 DYVVVCESWKFRCRKYWLKGER-KGKLETFA--ENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~--~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+.+..++ ++++++++++-+.. .+..+... ....++.-...+.+|+.+.+++.+
T Consensus 180 sml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 180 SMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred cEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 9555544 56778888876532 22222211 112233445668999988887766
No 110
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.50 E-value=0.031 Score=49.65 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=104.1
Q ss_pred EcCCCcEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCC
Q 017371 86 MDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG--VENFLSYVNG 157 (372)
Q Consensus 86 ~d~~G~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~ 157 (372)
+-+|+.|.+++.|.....|| .|. ...|..-.+... +|.+.| +++.||+..- .--..+| ++| ++.+ +|
T Consensus 153 f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF----~g 227 (343)
T KOG0286|consen 153 FLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF----EG 227 (343)
T ss_pred EcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEee----cc
Confidence 33488999998888888888 554 555655566777 899988 8999998543 3355666 666 5544 22
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeCC--ccCcceEEEecCCCEEE
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADG--FYFANGVALSRDEDYVV 234 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~~--~~~~~gi~~~~dg~~l~ 234 (372)
.. .-+|.+.+-|+|.-+.+-+ .++....||... .++.++... ...-+.++|+..|+.|
T Consensus 228 he-sDINsv~ffP~G~afatGS-----------------DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL- 288 (343)
T KOG0286|consen 228 HE-SDINSVRFFPSGDAFATGS-----------------DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL- 288 (343)
T ss_pred cc-cccceEEEccCCCeeeecC-----------------CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE-
Confidence 21 3578899999998877633 333344444432 444444322 2334689999999844
Q ss_pred EEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371 235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 279 (372)
Q Consensus 235 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 279 (372)
++...+..+..++.- +......+ ....+....+.+.+||.-.
T Consensus 289 fagy~d~~c~vWDtl--k~e~vg~L-~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTL--KGERVGVL-AGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred EeeecCCceeEeecc--ccceEEEe-eccCCeeEEEEECCCCcEE
Confidence 454566777777642 11122222 2334456778888888543
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.012 Score=59.68 Aligned_cols=167 Identities=13% Similarity=0.125 Sum_probs=99.4
Q ss_pred cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCccccccc
Q 017371 91 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFAN 164 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~ 164 (372)
.+.+++.++.|.++. .++...+.....-|...++++.+|+..++... .+|..++ .++ ..++. ...+ .+-
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~a----pVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDA----PVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCC----cee
Confidence 566666788888877 44443333222334437889989986666444 5677777 444 33332 2222 345
Q ss_pred ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC---------cceEEEecCCCEEEE
Q 017371 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF---------ANGVALSRDEDYVVV 235 (372)
Q Consensus 165 ~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~---------~~gi~~~~dg~~l~v 235 (372)
.|.++|+|++..+-+ .+|.|+.+|.+++......+++.. -..++|+|++..+.+
T Consensus 143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 789999999877543 689999999987766554444322 235789999776776
Q ss_pred EeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEE
Q 017371 236 CESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 236 ~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~ 282 (372)
... ++.|..|..++-.... .+.++ ....-..+..++.|.+..+.
T Consensus 206 ~~~-d~~Vkvy~r~~we~~f--~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGWELQF--KLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred ecc-CCeEEEEccCCceehe--eecccccccceEEEEEcCCCcEEeee
Confidence 654 5678888876532111 11111 11113446677887544443
No 112
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.47 E-value=0.00075 Score=49.64 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=45.8
Q ss_pred cEEEcCC-CcEEEEecC------------------CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-Cc
Q 017371 83 DASMDKN-GVIYTATRD------------------GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NG 139 (372)
Q Consensus 83 ~i~~d~~-G~l~v~~~~------------------g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~g 139 (372)
+++++++ |.+|+++.. |+++++| +++.+.+......|+ |+++++|+. |+|++.. ..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence 5788887 999999732 8999999 778888888888999 999999997 7788765 45
Q ss_pred EEEEc
Q 017371 140 LHKVS 144 (372)
Q Consensus 140 v~~~~ 144 (372)
|.++-
T Consensus 81 i~ryw 85 (89)
T PF03088_consen 81 ILRYW 85 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 113
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.47 E-value=0.0026 Score=62.86 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=47.4
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCc-----c--cccccccccCCCeEEEEeCCCCeEEEEeCCc--cCcceEEEec
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPH-----E--YCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSR 228 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~-----~--~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--~~~~gi~~~~ 228 (372)
..+..|..|++|++|+|||.......... . ....+....+.. +...++.+++++.++..- ....|++|+|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 34678899999999999998654221100 0 000011111111 555677778877776442 2346899999
Q ss_pred CCCEEEEE
Q 017371 229 DEDYVVVC 236 (372)
Q Consensus 229 dg~~l~v~ 236 (372)
|+++||+.
T Consensus 512 Dg~tlFvn 519 (524)
T PF05787_consen 512 DGRTLFVN 519 (524)
T ss_pred CCCEEEEE
Confidence 99998885
No 114
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.47 E-value=0.0043 Score=58.40 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=89.0
Q ss_pred EEEcCCCcEEEEecCC-eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCC
Q 017371 84 ASMDKNGVIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG 157 (372)
Q Consensus 84 i~~d~~G~l~v~~~~g-~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~ 157 (372)
+..+++ .+.+|+.+| .|-.++ +|+.+.+....+... .+.++++|. +.+++....++.+| .+| ++.+-..-.
T Consensus 367 ~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~- 443 (668)
T COG4946 367 IQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY- 443 (668)
T ss_pred EccCCc-ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc-
Confidence 344445 466777666 677777 667788888888888 999999998 66666555688999 788 665533222
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEe
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 237 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~ 237 (372)
..+-++++.++++ |++-+. .++--...|-.||.++++.-.+.+.-..--.-+|+||+++||+..
T Consensus 444 ---~lItdf~~~~nsr-~iAYaf------------P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 444 ---GLITDFDWHPNSR-WIAYAF------------PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---ceeEEEEEcCCce-eEEEec------------CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2455778888876 554221 112123446667777666655544433334567999999999875
Q ss_pred C
Q 017371 238 S 238 (372)
Q Consensus 238 ~ 238 (372)
.
T Consensus 508 ~ 508 (668)
T COG4946 508 A 508 (668)
T ss_pred c
Confidence 4
No 115
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.47 E-value=0.051 Score=47.69 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=40.0
Q ss_pred CCcEEEEecCCeEEEEe-CCceEEEEecCC-CcccCeEEcC-CCCEEEEeCCCcEEEEc-CCC
Q 017371 89 NGVIYTATRDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTSTK-EGHLIICDNANGLHKVS-EDG 147 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~-~p~~gl~~d~-dG~l~v~~~~~gv~~~~-~~g 147 (372)
.|-+|.|+.||..+.+| ...-..|...++ ....+-++++ ++.||++.....+..++ .++
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 45889999999999998 433334443332 2222556776 88999998776688888 455
No 116
>PTZ00421 coronin; Provisional
Probab=97.47 E-value=0.13 Score=50.65 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=88.0
Q ss_pred CCccEEEcC-CCc-EEEEecCCeEEEEe--CCc--------eEEEEecCCCcccCeEEcCCC-CEEEEeC-CCcEEEEc-
Q 017371 80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIICDN-ANGLHKVS- 144 (372)
Q Consensus 80 ~p~~i~~d~-~G~-l~v~~~~g~i~~~~--~g~--------~~~~~~~~~~p~~gl~~d~dG-~l~v~~~-~~gv~~~~- 144 (372)
...++++.+ ++. |..++.||.|..|+ ++. +..+........ .+++.|++ +++++.. +.-|..+|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 456788887 664 66667899999888 321 112221122344 78999875 5555433 34477777
Q ss_pred CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--
Q 017371 145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-- 220 (372)
Q Consensus 145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~-- 220 (372)
.++ ...+. +. ...+..+++.++|.+.++-. .++.|..+|+.+++..........
T Consensus 156 ~tg~~~~~l~----~h-~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 156 ERGKAVEVIK----CH-SDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCeEEEEEc----CC-CCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCc
Confidence 555 33221 11 12467899999998777633 577899999987765433322221
Q ss_pred cceEEEecCCCEEEEEeC---CCCeEEEEEcc
Q 017371 221 ANGVALSRDEDYVVVCES---WKFRCRKYWLK 249 (372)
Q Consensus 221 ~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~ 249 (372)
...+.+.++++.++.+.. ....|..+++.
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 235667888776655432 23457777764
No 117
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.051 Score=50.93 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=80.7
Q ss_pred cCCC-cEEEE-e--cCCeEEEEe--CCceEEEEecCCC-cccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecC
Q 017371 87 DKNG-VIYTA-T--RDGWIKRLQ--DGTWVNWKFIDSQ-TLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVN 156 (372)
Q Consensus 87 d~~G-~l~v~-~--~~g~i~~~~--~g~~~~~~~~~~~-p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~ 156 (372)
.++| .|.++ + .+.+++.+| +++++++....+. .. |..+.++.+ +|..-..+.|.+++ .+. .+.+.....
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 4566 44444 4 345688888 7888877664433 34 666665554 54444456799999 555 444433212
Q ss_pred CcccccccceEEccCCcEEEEeCCCC--CC-Cc--ccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC-
Q 017371 157 GSKLRFANDVVEASDGSLYFTVSSSK--YL-PH--EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE- 230 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~~~~--~~-~~--~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg- 230 (372)
+ ...--....+.|++.++.....+ +. .. ..+..+.+..+..+|+++|.+||+.+++...-..-+-+.++|..
T Consensus 123 ~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 123 D--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp T--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred c--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 1 11111233466787776543211 11 01 12345677788899999999999999987665555566777643
Q ss_pred CEEEEEeCC-----CCeEEEEEccCC
Q 017371 231 DYVVVCESW-----KFRCRKYWLKGE 251 (372)
Q Consensus 231 ~~l~v~~~~-----~~~i~~~~~~g~ 251 (372)
..+.+|.-+ ..|||.++.+|.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CEEEEeccCCcceeceEEEEEEcCCC
Confidence 334444432 248888887764
No 118
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.43 E-value=0.00026 Score=39.98 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=24.4
Q ss_pred ccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371 218 FYFANGVALSRDEDYVVVCESWKFRCRKY 246 (372)
Q Consensus 218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 246 (372)
+..|.|++++++|+ +||+|+.+++|++|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999997775 99999999999876
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.02 Score=53.74 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=108.0
Q ss_pred CccEEEcCCCc-EEEEecCCeEEEEe-CCceEEEE---ecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-cEEE
Q 017371 81 PEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF 151 (372)
Q Consensus 81 p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~~~~~---~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~~~l 151 (372)
-.++-+-+.-. |.++..+|.+..|. +|+..... .-...|+-..+|.++|. ..++... .-++.+| ..+ ++.+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 44566766553 45555777666666 66543322 22245654677888997 3333322 3366777 666 5554
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~ 231 (372)
.. ..|....+...+.+.+++++.... ...|.|+.+...|++...-..--....+++|+.|++
T Consensus 296 ~~-~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 296 KP-PYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cC-CCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 32 233334566778888999855432 246778888777666432222222345788999999
Q ss_pred EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.||++.. .+.|+.+++... .-...|.+...-.-..++...+|. |+|+.+
T Consensus 358 ~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 358 ELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 8888764 448999998754 333455544222234577778887 666654
No 120
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.16 Score=49.38 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=79.7
Q ss_pred eEEEEe-CC-ceEEEEecCCCcccCeEEcCCCC---E-EEEeCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEc
Q 017371 100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH---L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEA 169 (372)
Q Consensus 100 ~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~---l-~v~~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d 169 (372)
.|+..+ +| +.+.+........ .-++.|||+ + |+.... ..|+..+ ..| .+.+.. .++. ....++.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wS 239 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFS 239 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEEC
Confidence 566666 44 3444433222223 667899985 2 344322 2488888 555 444433 2332 1245788
Q ss_pred cCC-cEEEEeCCCCCCCcccccccccccCCCeEEE--EeCCC---CeEEEEeCCc-cCcceEEEecCCCEEEEEeC--CC
Q 017371 170 SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDPSS---NITTLVADGF-YFANGVALSRDEDYVVVCES--WK 240 (372)
Q Consensus 170 ~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~--~d~~t---~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~--~~ 240 (372)
||| +|.++-.. .+...++. ++.++ ++.+.+.... ......+|+|||+.++++.. +.
T Consensus 240 PDG~~Laf~s~~---------------~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 240 PRKKLLAFISDR---------------YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred CCCCEEEEEECC---------------CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 999 45554211 01112443 44432 3444444332 23345789999998777653 33
Q ss_pred CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371 241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
.+|+.+++++.. +....+. ...+........+||+.
T Consensus 305 ~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 305 PRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKK 340 (428)
T ss_pred ceEEEEECcccc-cceEEec-cCCCCccceeECCCCCE
Confidence 468888775321 1122222 11222345678888863
No 121
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.37 E-value=0.11 Score=47.60 Aligned_cols=177 Identities=18% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCc----ccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEE
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN 150 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p----~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~ 150 (372)
....|++..+.+-|+....|.|++-. .| .++........+ +..+.++ +.+.|++.. .|++... ..| .+.
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~-~g~ll~T~DgG~tW~~ 95 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGE-PGLLLHTTDGGKTWER 95 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEE-TTEEEEESSTTSS-EE
T ss_pred ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcC-CceEEEecCCCCCcEE
Confidence 44556676555666655667777766 33 355443222221 2256665 356787754 3554444 444 454
Q ss_pred Eee--ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEe
Q 017371 151 FLS--YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALS 227 (372)
Q Consensus 151 l~~--~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~ 227 (372)
+.. ..++. +..+....++.+++.. ..|.||+=.-.....+.+..+. ..-+.+..+
T Consensus 96 v~l~~~lpgs----~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 96 VPLSSKLPGS----PFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp ----TT-SS-----EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred eecCCCCCCC----eeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence 432 23332 2344444555555532 2466776654434555544332 223445667
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+||+++.|+.. ..++.-+-.|... .+.+.........+|.++++|++|+...+
T Consensus 154 ~dG~~vavs~~--G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~~G 206 (302)
T PF14870_consen 154 SDGRYVAVSSR--GNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLARG 206 (302)
T ss_dssp TTS-EEEEETT--SSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred CCCcEEEEECc--ccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEeCC
Confidence 89986666654 3466555444321 22222222345678999999999998865
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.36 E-value=0.034 Score=52.92 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=91.0
Q ss_pred CCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEecCC-CcccCeEEcCCCCEEEEeCCCcEEE-EcCCCcEEEeeec
Q 017371 79 NHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHK-VSEDGVENFLSYV 155 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~~gv~~-~~~~g~~~l~~~~ 155 (372)
-.++.|+... +.||+|+..+.|++=. .+.+.......+ .-+ |++..|+.++|++....+.++ ++...++ +....
T Consensus 330 G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~-wt~~~ 406 (626)
T KOG2106|consen 330 GPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLE-WTKII 406 (626)
T ss_pred CCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCcee-EEEEe
Confidence 3466666654 3499999777787766 444444333333 456 999999999998876655444 4422221 11111
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 235 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v 235 (372)
.. .....+++|.|.+-+. ...|+.+.+|.++.....+...-..-+-+.++|||.++-+
T Consensus 407 ~d----~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 407 ED----PAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cC----ceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence 11 2346788898966663 3568899999887665555555333466889999997666
Q ss_pred EeCCCCeEEEEEcc
Q 017371 236 CESWKFRCRKYWLK 249 (372)
Q Consensus 236 ~~~~~~~i~~~~~~ 249 (372)
.. -++.|+.|.++
T Consensus 465 gs-~d~~iyiy~Vs 477 (626)
T KOG2106|consen 465 GS-HDNHIYIYRVS 477 (626)
T ss_pred ec-CCCeEEEEEEC
Confidence 54 45667777665
No 123
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.34 E-value=0.014 Score=57.82 Aligned_cols=125 Identities=20% Similarity=0.381 Sum_probs=72.8
Q ss_pred CcccccccceEEccC-CcEEEEeCCCC-CCCccc-ccccccccCCCeEEEEeCCCC-------eEEEEe-----------
Q 017371 157 GSKLRFANDVVEASD-GSLYFTVSSSK-YLPHEY-CLDILEGKPHGQLLKYDPSSN-------ITTLVA----------- 215 (372)
Q Consensus 157 ~~~~~~~~~l~~d~d-G~i~vtd~~~~-~~~~~~-~~~~~~~~~~g~v~~~d~~t~-------~~~~~~----------- 215 (372)
..++..+.++.+++. |++||+-+... ...... ..........|.|++++++.+ +++.+.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 346788999999974 79999866422 100000 001123446789999998755 444432
Q ss_pred -------CCccCcceEEEecCCCEEEEEeCCCCeE------------EEE--------EccCCCCcceeeeccCC-CCCC
Q 017371 216 -------DGFYFANGVALSRDEDYVVVCESWKFRC------------RKY--------WLKGERKGKLETFAENL-PGAP 267 (372)
Q Consensus 216 -------~~~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~--------~~~g~~~~~~~~~~~~~-~g~p 267 (372)
..+..|..|+++++|+ ||+++.....- +.+ +..+...+....|.... ..-.
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~ 504 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEI 504 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccc
Confidence 1256789999999998 88887655421 111 11122333444444221 1245
Q ss_pred ceeEEcCCCC-EEEEE
Q 017371 268 DNINLAPDGT-FWIAI 282 (372)
Q Consensus 268 ~~i~~d~~G~-lwva~ 282 (372)
.|+++++||+ |||.-
T Consensus 505 tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 505 TGPCFSPDGRTLFVNI 520 (524)
T ss_pred ccceECCCCCEEEEEE
Confidence 6789999995 66643
No 124
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.33 E-value=0.12 Score=47.04 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCcccCeEEcCCCCEEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~ 191 (372)
.+.. +++..|+....|+-.. .-.+++| .+| ........++ -+|--.-++++||+..++..+
T Consensus 5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEn----------- 70 (305)
T PF07433_consen 5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTEN----------- 70 (305)
T ss_pred cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC--CEEecCEEEcCCCCEEEEecc-----------
Confidence 4556 8888885544444332 2377788 666 3322222222 244456789999976666442
Q ss_pred cccccCCCeEEEEeCCCCeEEE---EeCCccCcceEEEecCCCEEEEEeC
Q 017371 192 ILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 192 ~~~~~~~g~v~~~d~~t~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~ 238 (372)
......|.|-.||.. ...+. +.+.--.|.-+.+.+||+.|.|++-
T Consensus 71 -d~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 71 -DYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred -ccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 113367889999987 33333 3444556788999999998999864
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.31 E-value=0.03 Score=48.69 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=81.3
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee-ecCCcccccccc
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS-YVNGSKLRFAND 165 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~-~~~~~~~~~~~~ 165 (372)
|..+.-+..++.|..|| .|+...-...-..+. ++-+.+||++.....+.+|..++...+..+.. ..+- .+..
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~----nV~S 229 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC----NVES 229 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCcc----cccc
Confidence 33444444667777777 554333223223445 89999999988777677788888443333322 1111 1223
Q ss_pred eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcc-eEEEecCCCEEEEEeCCCCeE
Q 017371 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFAN-GVALSRDEDYVVVCESWKFRC 243 (372)
Q Consensus 166 l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~-gi~~~~dg~~l~v~~~~~~~i 243 (372)
-...|+..+||+ +.....+|+||-.||+-... ..+-..|. .+.|+|||. +|.+.+.++.|
T Consensus 230 ASL~P~k~~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTi 291 (334)
T KOG0278|consen 230 ASLHPKKEFFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTI 291 (334)
T ss_pred ccccCCCceEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceE
Confidence 344577788886 33567899999888764433 34544553 577999997 99888766544
Q ss_pred E
Q 017371 244 R 244 (372)
Q Consensus 244 ~ 244 (372)
.
T Consensus 292 r 292 (334)
T KOG0278|consen 292 R 292 (334)
T ss_pred E
Confidence 3
No 126
>PRK13684 Ycf48-like protein; Provisional
Probab=97.31 E-value=0.14 Score=48.02 Aligned_cols=175 Identities=10% Similarity=0.126 Sum_probs=86.7
Q ss_pred cEEEcCCCcEEEEecCCeEEEEeC-C-ceEEEEe---cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeeec
Q 017371 83 DASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV 155 (372)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~i~~~~~-g-~~~~~~~---~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~~ 155 (372)
+++++. +..|++...|.|++-.| | .++.+.. ..+.+. .+....++.+|++.....+++-+..| .+.+....
T Consensus 94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence 344442 34565555666777653 3 4555432 123455 44444445666665444466655445 44443322
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE-eCCCCeEEEEeCC-ccCcceEEEecCCCEE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVADG-FYFANGVALSRDEDYV 233 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l 233 (372)
....+++.+.++|.+++.. ..|.+++- |.....++.+... ....+++++.++++ +
T Consensus 172 ----~g~~~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 ----AGVVRNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred ----cceEEEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence 2345678888888666532 34566665 3222234444322 23446788888887 5
Q ss_pred EEEeCCCCeEEEE-EccCCCCcceeeeccCCC-CCCceeEEcCCCCEEEEEec
Q 017371 234 VVCESWKFRCRKY-WLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 234 ~v~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwva~~~ 284 (372)
|++... ...++ ..++...-+......... -....+.+.+++++|++...
T Consensus 229 ~~vg~~--G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 229 WMLARG--GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred EEEecC--CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC
Confidence 555433 24444 233322111100000000 01345677888899997754
No 127
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.095 Score=46.71 Aligned_cols=251 Identities=15% Similarity=0.124 Sum_probs=118.2
Q ss_pred EcCCCcEEEEe--cCCeEEEEeCCceEEEEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEcCCC---cEEEeeecCC
Q 017371 86 MDKNGVIYTAT--RDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG---VENFLSYVNG 157 (372)
Q Consensus 86 ~d~~G~l~v~~--~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~~~g---~~~l~~~~~~ 157 (372)
.+.+|..++.. ..|++. .-.....+.. ||+++|.-..-|+-.. .-.+.+|.++ ..++... .+
T Consensus 43 ~~~dgs~g~a~~~eaGk~v--------~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~ 112 (366)
T COG3490 43 DARDGSFGAATLSEAGKIV--------FATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EG 112 (366)
T ss_pred eccCCceeEEEEccCCcee--------eeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cC
Confidence 34577777665 344332 1111223445 7777765433332221 2255666544 2223221 22
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE---eCCccCcceEEEecCCCEEE
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVV 234 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~---~~~~~~~~gi~~~~dg~~l~ 234 (372)
+ ++--.-.+.+||.+.++... ++ ....|-|-.||.. ..+..+ .+---.|.-+.+.+||+.+.
T Consensus 113 -R-HfyGHGvfs~dG~~LYATEn----------df--d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 113 -R-HFYGHGVFSPDGRLLYATEN----------DF--DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred -c-eeecccccCCCCcEEEeecC----------CC--CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence 1 33334568899976555432 11 1234555566654 233332 22334577789999999888
Q ss_pred EEeCCCCeEEEE--------EccCCCCcceeeecc-------CCCCCC--------ceeEEcCCCCEEEEEe--cCchhH
Q 017371 235 VCESWKFRCRKY--------WLKGERKGKLETFAE-------NLPGAP--------DNINLAPDGTFWIAII--KLDARR 289 (372)
Q Consensus 235 v~~~~~~~i~~~--------~~~g~~~~~~~~~~~-------~~~g~p--------~~i~~d~~G~lwva~~--~~~~~~ 289 (372)
+++- .|... +++.-+ ..-.+.+ ....+| .-+.+|.||++|.++. +.++..
T Consensus 178 vanG---GIethpdfgR~~lNldsMe--PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 178 VANG---GIETHPDFGRTELNLDSME--PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred EeCC---ceecccccCccccchhhcC--ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 7753 23322 111100 0001111 001123 3478899999999985 344443
Q ss_pred HHHhhcchhHHHH-HHhcCcccc--------ccccCCCceEEEEECCCCcEEEEEECCCCCeec-----cceeeEEECCE
Q 017371 290 MKILNSSKLIKHV-LAAYPKLFS--------QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS-----FVTSGLQVDNH 355 (372)
Q Consensus 290 ~~~~~~~~~~r~~-~~~~p~~~~--------~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~-----~~t~~~~~~g~ 355 (372)
-.++.....-+.+ ...+|+..+ -+-...+.+.|..-+|.|+....+....|.... .++.+....+-
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~g 332 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGG 332 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCc
Confidence 3333221111111 111333221 111234456666667788877766665554322 34455555555
Q ss_pred EEEEeCCCCeE
Q 017371 356 LYVISLTSNFI 366 (372)
Q Consensus 356 L~igs~~~~~i 366 (372)
.-+.|..+..+
T Consensus 333 f~vssg~G~~~ 343 (366)
T COG3490 333 FAVSSGQGRII 343 (366)
T ss_pred eEEecCCceEE
Confidence 55555554443
No 128
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.26 E-value=0.19 Score=47.78 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=57.9
Q ss_pred eEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371 200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 279 (372)
Q Consensus 200 ~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 279 (372)
.|-.||.++++++.+..++..--.+.+++||+++.+++. +..|+.+++++.+ ....-....++..++...+++ =|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididngn---v~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCC---eeEecccccceeEEEEEcCCc-ee
Confidence 677888888999998888888888999999998888774 6689999998643 222222344556667777766 46
Q ss_pred EEEe
Q 017371 280 IAII 283 (372)
Q Consensus 280 va~~ 283 (372)
+|-.
T Consensus 458 iAYa 461 (668)
T COG4946 458 IAYA 461 (668)
T ss_pred EEEe
Confidence 6654
No 129
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.19 E-value=0.41 Score=50.44 Aligned_cols=176 Identities=11% Similarity=0.069 Sum_probs=94.2
Q ss_pred ccEEEcC-CC-cEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcC-CCCEEEEeCCCc-EEEEc-CCC--cEEE
Q 017371 82 EDASMDK-NG-VIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG--VENF 151 (372)
Q Consensus 82 ~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~~g-v~~~~-~~g--~~~l 151 (372)
.++++.+ .+ .|..++.+|.|..|+ .++ ...+....+... ++++.+ ++.++++....| +..++ .++ ...+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 4566654 23 566666899999998 343 233322233455 899985 677766655444 66677 555 3333
Q ss_pred eeecCCcccccccceEEc-cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeCCc-cCcceEEEec
Q 017371 152 LSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGF-YFANGVALSR 228 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d-~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~~~-~~~~gi~~~~ 228 (372)
... ..+..+.+. ++|+..++- ..++.|+.+|..+++. .....+. ..-..+.|.
T Consensus 615 ~~~------~~v~~v~~~~~~g~~latg-----------------s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 615 KTK------ANICCVQFPSESGRSLAFG-----------------SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ecC------CCeEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 211 123455553 457665542 2567899998765432 1112222 122456675
Q ss_pred CCCEEEEEeCCCCeEEEEEccCCCC----cceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 229 DEDYVVVCESWKFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 229 dg~~l~v~~~~~~~i~~~~~~g~~~----~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+++.+ ++.+.++.|..+++..... .....+. ........+.++++|.+.++...
T Consensus 671 ~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 671 DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence 66644 4445566777777643210 1112222 12223456788888886665544
No 130
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.15 E-value=0.041 Score=47.17 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=79.5
Q ss_pred CCCcEEEEecCCeEEEEe--CCceEEEEecCC-CcccCeEEcCCCCEE-EEeC--CCcEEEEcCCC--cEEEeeecCCcc
Q 017371 88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLI-ICDN--ANGLHKVSEDG--VENFLSYVNGSK 159 (372)
Q Consensus 88 ~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~-~p~~gl~~d~dG~l~-v~~~--~~gv~~~~~~g--~~~l~~~~~~~~ 159 (372)
..+.-|.+. -.|++++ +.....+..... ... .+++.|+|+-+ |+.. ...+..++.++ +..+ ..
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~~-- 100 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----GT-- 100 (194)
T ss_pred cCcceEEee--EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----cC--
Confidence 344445443 2477776 334444433222 345 99999999643 4432 23466666334 2222 11
Q ss_pred cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 239 (372)
Q Consensus 160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 239 (372)
...|.|.+.|+|++.+.-.. +...|.|..+|..+.+.... ........++|+|||+++..+.+.
T Consensus 101 -~~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 101 -QPRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred -CCceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEec
Confidence 24578999999987765221 12357788899874443222 223345788999999988887763
Q ss_pred -----CCeEEEEEccCC
Q 017371 240 -----KFRCRKYWLKGE 251 (372)
Q Consensus 240 -----~~~i~~~~~~g~ 251 (372)
++.+..++..|.
T Consensus 165 ~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQGR 181 (194)
T ss_pred cceeccccEEEEEecCe
Confidence 344455555553
No 131
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.14 E-value=0.0007 Score=38.20 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=17.4
Q ss_pred CCCccEEEcCCCcEEEEe-cCCeEEEE
Q 017371 79 NHPEDASMDKNGVIYTAT-RDGWIKRL 104 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~ 104 (372)
..|.+|+++++|.||+++ .+++|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 467777777777777777 45555543
No 132
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=97.13 E-value=0.21 Score=45.90 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=75.4
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------------cCcceEEEe--
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------YFANGVALS-- 227 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------------~~~~gi~~~-- 227 (372)
.+|+|..+++|.+.+|- +-...|+++|+++|++.+...+- .......+.
T Consensus 145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE 207 (299)
T ss_pred EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence 56788888999988863 24567999999999988876443 111122233
Q ss_pred --cCCCEEEEEeC----------CCCeEEEEEccCCCCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHH
Q 017371 228 --RDEDYVVVCES----------WKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMK 291 (372)
Q Consensus 228 --~dg~~l~v~~~----------~~~~i~~~~~~g~~~~~~~~~~~~----~~g~p~~i~~d~~G~lwva~~~~~~~~~~ 291 (372)
.++. +-+.+. .+.++..++...........+.+. ......++..=++||+.|+...
T Consensus 208 ~~~~~~-IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~------- 279 (299)
T PF14269_consen 208 SNDDGT-ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN------- 279 (299)
T ss_pred CCCCCE-EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence 3333 334333 345676777653322222222211 1112345666778999998877
Q ss_pred HhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEE
Q 017371 292 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV 336 (372)
Q Consensus 292 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ 336 (372)
.+.+.+++++|+++..++
T Consensus 280 ---------------------------~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 280 ---------------------------NGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred ---------------------------CceEEEECCCCCEEEEEE
Confidence 679999999999987654
No 133
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.12 E-value=0.26 Score=46.81 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=64.5
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCC--CcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCC-ccccc
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG-SKLRF 162 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~--~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~-~~~~~ 162 (372)
+|+||+++.+|.+++++ +|+........+ .-. +-.+-.++.+|+.....-++.++ .+|...+....+. .....
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 89999999999999999 566543333323 122 33444578888885334589999 5573332222111 11122
Q ss_pred ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 214 (372)
Q Consensus 163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~ 214 (372)
..... ..+|.+|++..+ . ++.++.+|+.+|+...-
T Consensus 190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLKWS 224 (370)
T ss_pred ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEeee
Confidence 22222 578899996431 1 34788899877776653
No 134
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.12 E-value=0.059 Score=50.17 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCCCCCccEEEcCC--C-cEEEEecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC
Q 017371 76 GSVNHPEDASMDKN--G-VIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~--G-~l~v~~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g 147 (372)
|......++.+-|. + .|-.+..||.+.-|+ +++ +..+..-..+.. -++|.|+|+...+.... .-..+| .++
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccc
Confidence 33344445555553 2 566666777777666 432 222222223445 78999999977765443 223344 333
Q ss_pred cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEE
Q 017371 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL 226 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~ 226 (372)
.+.+.. +|- ...+.++++.+||.+..|-. ....|+|| |..+|....+..+ ...--+++|
T Consensus 294 ~ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGG---------------lD~~~RvW--DlRtgr~im~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 294 SELLLQ--EGH-SKGVFSIAFQPDGSLAATGG---------------LDSLGRVW--DLRTGRCIMFLAGHIKEILSVAF 353 (459)
T ss_pred hhhHhh--ccc-ccccceeEecCCCceeeccC---------------ccchhhee--ecccCcEEEEecccccceeeEeE
Confidence 222211 221 24677999999999887622 22345666 4455666555555 344468999
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
+|.| +.+.+.+.++.+..+++...+. .-.. .........+.++++...++.+.
T Consensus 354 sPNG-y~lATgs~Dnt~kVWDLR~r~~--ly~i-pAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 354 SPNG-YHLATGSSDNTCKVWDLRMRSE--LYTI-PAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred CCCc-eEEeecCCCCcEEEeeeccccc--ceec-ccccchhhheEecccCCeEEEEc
Confidence 9998 4777777777777777754321 1111 11223456788888544444443
No 135
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.05 E-value=0.048 Score=53.00 Aligned_cols=126 Identities=13% Similarity=0.229 Sum_probs=79.8
Q ss_pred CcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-------eEEEEe--------CC---
Q 017371 157 GSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-------ITTLVA--------DG--- 217 (372)
Q Consensus 157 ~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-------~~~~~~--------~~--- 217 (372)
..++-.|.+|++.+. |++|++.....-. .+......+....|+|+||-+.++ +++.+. .+
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 346678889999874 6899987642211 110111122335688999987765 444443 11
Q ss_pred -------ccCcceEEEecCCCEEEEEeCCCC--------eEEEEEccCCCCcceeeeccCCC-CCCceeEEcCCC-CEEE
Q 017371 218 -------FYFANGVALSRDEDYVVVCESWKF--------RCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDG-TFWI 280 (372)
Q Consensus 218 -------~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G-~lwv 280 (372)
+..|.+++|++.|+ ||++..+.. .+..+...+++.++...|..... .--.|.++.+|| .++|
T Consensus 492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 44589999999998 888765443 34444445666777777764432 235678999998 6888
Q ss_pred EEec
Q 017371 281 AIIK 284 (372)
Q Consensus 281 a~~~ 284 (372)
+-..
T Consensus 571 ~vQH 574 (616)
T COG3211 571 NVQH 574 (616)
T ss_pred EecC
Confidence 8765
No 136
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.04 E-value=0.0031 Score=39.26 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=33.8
Q ss_pred EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 214 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 214 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
+..++..|+|+++++.++.+||++.....|.+.+++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 44577889999999999999999999999999998774
No 137
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.02 E-value=0.12 Score=49.36 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCccEEEcCCC-cEEEEecCCeEEEEe-CC---c---eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCCcEE
Q 017371 80 HPEDASMDKNG-VIYTATRDGWIKRLQ-DG---T---WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDGVEN 150 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g---~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g~~~ 150 (372)
-...+++|+.| +++.|..+-.|..|| .| . ++.+.+..+++...+.+.+.|+.+++-.+ .-...+|.+|.+.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 34568999988 788888888899998 44 2 34444444555448888888865444344 3355566888333
Q ss_pred EeeecCCcccccccc-------------eEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371 151 FLSYVNGSKLRFAND-------------VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 216 (372)
Q Consensus 151 l~~~~~~~~~~~~~~-------------l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~ 216 (372)
..-. .|. .++.+ ..+.|+. ..++|-+ ..++-|||-++..-.+.+++..
T Consensus 249 ~e~~-KGD--QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s---------------~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 249 VEFS-KGD--QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS---------------YDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eeee-ccc--hhhhhhhccCCceeeeeccccccCcccceEEec---------------CCCcEEEEecCCchhheeEEee
Confidence 2111 110 12222 2233332 2333321 1233455555433234444332
Q ss_pred ----Ccc-CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-c-CCCC-CCceeEEcCCCCEEEEEecC-ch
Q 017371 217 ----GFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-E-NLPG-APDNINLAPDGTFWIAIIKL-DA 287 (372)
Q Consensus 217 ----~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~-~~~g-~p~~i~~d~~G~lwva~~~~-~~ 287 (372)
+.. .+...+|++||+ ++.+...++.|..++. +.......... + +.+| -...|.+..||++.++-... .-
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred ccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 222 244567999998 5777777777777665 32222222111 1 2222 35678899999988765432 22
Q ss_pred hHHHHhhcc
Q 017371 288 RRMKILNSS 296 (372)
Q Consensus 288 ~~~~~~~~~ 296 (372)
.+||+=+.+
T Consensus 389 KvWDLrq~k 397 (641)
T KOG0772|consen 389 KVWDLRQFK 397 (641)
T ss_pred eeeeccccc
Confidence 455554433
No 138
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.01 E-value=0.61 Score=49.15 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=82.4
Q ss_pred CccEEEcCCCcEE-EEecCCeEEEEe-CCce---E-----EEE-ecCCCcccCeEEcCC-CCEEEEeCCCc-EEEEc-CC
Q 017371 81 PEDASMDKNGVIY-TATRDGWIKRLQ-DGTW---V-----NWK-FIDSQTLVGLTSTKE-GHLIICDNANG-LHKVS-ED 146 (372)
Q Consensus 81 p~~i~~d~~G~l~-v~~~~g~i~~~~-~g~~---~-----~~~-~~~~~p~~gl~~d~d-G~l~v~~~~~g-v~~~~-~~ 146 (372)
..+++++++|.+. ++..++.|..|+ .... . ... ....... ++++.+. ++..++....| +..+| .+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 4568899998754 555889898887 3210 0 000 1112234 7777753 55444433334 55667 44
Q ss_pred C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce
Q 017371 147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223 (372)
Q Consensus 147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g 223 (372)
+ ...+ .+. ...+..+++.+ +|.++++-+ .++.|..+|..+++.............
T Consensus 565 ~~~~~~~----~~H-~~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~ 622 (793)
T PLN00181 565 SQLVTEM----KEH-EKRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANICC 622 (793)
T ss_pred CeEEEEe----cCC-CCCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeEE
Confidence 4 2222 111 13467888985 677777632 467788888776654332222223345
Q ss_pred EEEec-CCCEEEEEeCCCCeEEEEEccC
Q 017371 224 VALSR-DEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 224 i~~~~-dg~~l~v~~~~~~~i~~~~~~g 250 (372)
+.+.+ ++. .+++.+.++.|..|++..
T Consensus 623 v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 623 VQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 66644 566 555556677898888754
No 139
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.01 E-value=0.17 Score=43.89 Aligned_cols=172 Identities=14% Similarity=0.111 Sum_probs=96.8
Q ss_pred cEEEcCCCcEEEEec-CCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEE-EEeCCCcEEEEc-CCC--cEEEeee
Q 017371 83 DASMDKNGVIYTATR-DGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLI-ICDNANGLHKVS-EDG--VENFLSY 154 (372)
Q Consensus 83 ~i~~d~~G~l~v~~~-~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~-v~~~~~gv~~~~-~~g--~~~l~~~ 154 (372)
.+-+.-+|+..++.. +-.|..|+ .|. ++++...+...+ ..+...|+.-+ -+..++.+..+| .+| .+.+...
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 344556787666664 44444455 444 444444444445 66666666433 334446688899 777 4444221
Q ss_pred cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE-EecCCCEE
Q 017371 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA-LSRDEDYV 233 (372)
Q Consensus 155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~-~~~dg~~l 233 (372)
...+|.+.+..+..+.++-+ -+..+..+|-.+..++.+..--.+..|+. ++-.+ +.
T Consensus 101 -----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-he 157 (307)
T KOG0316|consen 101 -----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HE 157 (307)
T ss_pred -----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cE
Confidence 23678899988888888633 23445556655444444322222233332 23223 58
Q ss_pred EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
+++.+.++++.+|++.-+.+ ..+...--...+.+.+||+.-++..
T Consensus 158 IvaGS~DGtvRtydiR~G~l-----~sDy~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTL-----SSDYFGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred EEeeccCCcEEEEEeeccee-----ehhhcCCcceeEEecCCCCEEEEee
Confidence 88888889999999853221 1122211145688999998665554
No 140
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.94 E-value=0.097 Score=52.28 Aligned_cols=192 Identities=17% Similarity=0.197 Sum_probs=107.9
Q ss_pred cccCeEEcCCCCEEEEeCCCc-EEEEcCCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371 119 TLVGLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 119 p~~gl~~d~dG~l~v~~~~~g-v~~~~~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
.+ |..|.|+.++.+..+..+ +..+.-+-...++.. .|. ..-+.++.|.|.|..+.| .+ +..
T Consensus 454 Vy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH-~~PVwdV~F~P~GyYFat-as--------------~D~ 515 (707)
T KOG0263|consen 454 VY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGH-LAPVWDVQFAPRGYYFAT-AS--------------HDQ 515 (707)
T ss_pred ee-eeeecccccceeeccCCcceeeeecccceeEEEe-cCC-CcceeeEEecCCceEEEe-cC--------------CCc
Confidence 35 899999999888765533 333331111111111 121 123467888888865544 32 446
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 277 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~ 277 (372)
..++|-.|-. .-.++++..+..-..+.|+|...++ .+.+.+..|..++...+ ..+..|. ...+-...+++.++|+
T Consensus 516 tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeecccC-CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcCCCc
Confidence 6788888752 4445555556666668899988633 34455555555555432 3355664 3444467789999996
Q ss_pred EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCE
Q 017371 278 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNH 355 (372)
Q Consensus 278 lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~ 355 (372)
+.++... .+.|.-.| +.|+.+..+....+ .+.++.+. +|.
T Consensus 591 ~LaSg~e----------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 591 YLASGDE----------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRDGN 632 (707)
T ss_pred eEeeccc----------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecCCC
Confidence 6555444 23444444 34555544433333 35556654 555
Q ss_pred EEEEeCCCCeEEEEeC
Q 017371 356 LYVISLTSNFIGKVQL 371 (372)
Q Consensus 356 L~igs~~~~~i~~~~~ 371 (372)
+.+.+-..+.|..+|+
T Consensus 633 vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCeEEEEEc
Confidence 5555556666666654
No 141
>PTZ00421 coronin; Provisional
Probab=96.90 E-value=0.51 Score=46.61 Aligned_cols=112 Identities=5% Similarity=-0.005 Sum_probs=67.9
Q ss_pred CcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC-c-E----EEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcc
Q 017371 118 QTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-V-E----NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHE 187 (372)
Q Consensus 118 ~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g-~-~----~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~ 187 (372)
... ++++.| +++++++... ..|..++ +++ . . .+. ...+. ...+..+++.+++ ++.++-
T Consensus 77 ~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH-~~~V~~l~f~P~~~~iLaSg--------- 144 (493)
T PTZ00421 77 PII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-HLQGH-TKKVGIVSFHPSAMNVLASA--------- 144 (493)
T ss_pred CEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceE-EecCC-CCcEEEEEeCcCCCCEEEEE---------
Confidence 345 899998 7776655444 4466666 433 2 1 111 11221 1345678888875 565542
Q ss_pred cccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 188 YCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 188 ~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
..++.|..+|..+++....... ...-..++|++||+ ++++.+.+..|..|++..
T Consensus 145 --------s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 145 --------GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred --------eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence 2467788889887765444433 22346789999998 555555677788888764
No 142
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.90 E-value=0.037 Score=48.15 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEE
Q 017371 127 KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 203 (372)
Q Consensus 127 ~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~ 203 (372)
.|..+.-+...+.|..+| .+| ++.|... ..+..+-+.+||+|..... .+.|..
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~------------------gssV~F 209 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAY------------------GSSVKF 209 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEec------------------CceeEE
Confidence 444455443346688888 777 4433221 3456788899998766422 235666
Q ss_pred EeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371 204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 204 ~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~ 283 (372)
.|+++-....-.+--..-+.-.++|+. .+||+.-....+++|+.++.. +.+.+....+|-...+.+.++|.+|.+..
T Consensus 210 wdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 210 WDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred eccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccC
Confidence 777542221111111122344578887 499998888899999987542 22334344556567889999999998765
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
.
T Consensus 287 E 287 (334)
T KOG0278|consen 287 E 287 (334)
T ss_pred C
Confidence 4
No 143
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.85 E-value=0.069 Score=49.83 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=65.9
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE-EE--eCCc-------------cCcceEE
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LV--ADGF-------------YFANGVA 225 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~-~~--~~~~-------------~~~~gi~ 225 (372)
-+.+|++.++|.+|+++... .......+|++++.+ |++. .+ ...+ ....+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~-----------~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGG-----------RTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCc-----------cCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 56689998999999997631 001113689999987 5542 22 1111 1123789
Q ss_pred EecCCCEEEEEeCCC---------------CeEEEEEccCCC--CcceeeeccC-----CCCCCceeEEcCCCCEEEEEe
Q 017371 226 LSRDEDYVVVCESWK---------------FRCRKYWLKGER--KGKLETFAEN-----LPGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~---------------~~i~~~~~~g~~--~~~~~~~~~~-----~~g~p~~i~~d~~G~lwva~~ 283 (372)
+++||+.||++.-.. -||++|+..... ..+..-..+. ....+..+..-++|+++|-..
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888764322 367788775421 1111111111 112355677888899999887
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 6
No 144
>PTZ00420 coronin; Provisional
Probab=96.84 E-value=0.62 Score=46.67 Aligned_cols=147 Identities=11% Similarity=-0.005 Sum_probs=85.6
Q ss_pred CCCccEEEcCC-C-cEEEEecCCeEEEEe--CC-c-eE-------EEEecCCCcccCeEEcCCCCEE-EE-eCCCcEEEE
Q 017371 79 NHPEDASMDKN-G-VIYTATRDGWIKRLQ--DG-T-WV-------NWKFIDSQTLVGLTSTKEGHLI-IC-DNANGLHKV 143 (372)
Q Consensus 79 ~~p~~i~~d~~-G-~l~v~~~~g~i~~~~--~g-~-~~-------~~~~~~~~p~~gl~~d~dG~l~-v~-~~~~gv~~~ 143 (372)
....++++.++ + .|..++.+|.|..|+ .+ . .. .+........ .+++.|++..+ ++ ..+..+..+
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence 45667888875 4 455666899999888 33 1 11 1111123345 88999988643 33 333457777
Q ss_pred c-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371 144 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220 (372)
Q Consensus 144 ~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~ 220 (372)
| .++ ...+. .. ..+..++++++|++.++.. .++.|..+|+.+++......+...
T Consensus 154 Dl~tg~~~~~i~--~~----~~V~SlswspdG~lLat~s-----------------~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 154 DIENEKRAFQIN--MP----KKLSSLKWNIKGNLLSGTC-----------------VGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred ECCCCcEEEEEe--cC----CcEEEEEECCCCCEEEEEe-----------------cCCEEEEEECCCCcEEEEEecccC
Confidence 7 555 22221 11 2467899999999887632 456789999987765433322221
Q ss_pred cc-eE-----EEecCCCEEEEEeCCC---CeEEEEEcc
Q 017371 221 AN-GV-----ALSRDEDYVVVCESWK---FRCRKYWLK 249 (372)
Q Consensus 221 ~~-gi-----~~~~dg~~l~v~~~~~---~~i~~~~~~ 249 (372)
.. .. .++++++++..+...+ ..|..+++.
T Consensus 211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 11 11 2347877666655433 247777765
No 145
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.84 E-value=0.41 Score=45.16 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=73.4
Q ss_pred EEEcC---CCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcc-----cCeEEcCCCC---EEEEeCC----C--cEEEEc
Q 017371 84 ASMDK---NGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-----VGLTSTKEGH---LIICDNA----N--GLHKVS 144 (372)
Q Consensus 84 i~~d~---~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~-----~gl~~d~dG~---l~v~~~~----~--gv~~~~ 144 (372)
|++++ ...+++++ .++.++.|+ +|+...... .++++ .|+.+ .|+ |.++... . .+++++
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEec
Confidence 55553 44677776 677899999 776544332 34443 03333 232 4444321 1 367777
Q ss_pred -CCC-cEEEeeec-C-CcccccccceEEc---cCCcEEEEeCCCCCCCcccccccccccCCCeE--EEEe-CCCCeEE--
Q 017371 145 -EDG-VENFLSYV-N-GSKLRFANDVVEA---SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYD-PSSNITT-- 212 (372)
Q Consensus 145 -~~g-~~~l~~~~-~-~~~~~~~~~l~~d---~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v--~~~d-~~t~~~~-- 212 (372)
.+| ++.+.... + ...+..+.+++.- .+|.+|+.... ..|.+ |++. ...+.+.
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~ 199 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSAT 199 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeE
Confidence 456 55443210 0 1122346677763 35777774321 33444 3332 2233221
Q ss_pred --EEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 213 --LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 213 --~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.-+.....+.|++++....+||+++- +..||+|..+.
T Consensus 200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep 238 (381)
T PF02333_consen 200 LVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEP 238 (381)
T ss_dssp EEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSC
T ss_pred EEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCC
Confidence 11233456789999999889999996 46899999864
No 146
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.72 E-value=0.5 Score=47.23 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=15.9
Q ss_pred CCCCCceeEEcCCCCEEEEEec
Q 017371 263 LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 263 ~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.+..|.|+.+++||...+....
T Consensus 319 VGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred CCCCccceEECCCCCEEEEeCC
Confidence 3446999999999975555443
No 147
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.1 Score=48.18 Aligned_cols=188 Identities=18% Similarity=0.173 Sum_probs=107.4
Q ss_pred ceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC-CCcccCe-----------EEcC--------
Q 017371 70 FIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVGL-----------TSTK-------- 127 (372)
Q Consensus 70 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~-~~p~~gl-----------~~d~-------- 127 (372)
......|......++....+|.||.++.|++|..|+ +|......... ...+ .| +|++
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCCh
Confidence 344445655667788888899999999999998888 65422110000 0000 11 1122
Q ss_pred -----------------CCCEEEEeCC-CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccc
Q 017371 128 -----------------EGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 188 (372)
Q Consensus 128 -----------------dG~l~v~~~~-~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~ 188 (372)
.|+-.|+..+ ..++.+++.. .+.+... .| -...+|.+.+.|||++..+-+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tg-Hq~lVn~V~fSPd~r~IASaS--------- 386 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-TG-HQALVNHVSFSPDGRYIASAS--------- 386 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh-hc-hhhheeeEEECCCccEEEEee---------
Confidence 2233444333 3466666322 2111111 11 124678999999998665533
Q ss_pred ccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371 189 CLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 267 (372)
Q Consensus 189 ~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 267 (372)
.+..|-..|..+|++-..+.+. ..-.-++++.|.+ |+|+.+.+..+..+++...++ ...+||.-
T Consensus 387 --------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl------~~DLpGh~ 451 (480)
T KOG0271|consen 387 --------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKL------KQDLPGHA 451 (480)
T ss_pred --------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeee------cccCCCCC
Confidence 3445666677778764444432 2335689999987 999988888888888754332 22466654
Q ss_pred cee---EEcCCCCEEEEEec
Q 017371 268 DNI---NLAPDGTFWIAIIK 284 (372)
Q Consensus 268 ~~i---~~d~~G~lwva~~~ 284 (372)
|.+ -..+||..-++...
T Consensus 452 DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred ceEEEEEecCCCceeecCCC
Confidence 543 23578876665544
No 148
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.69 E-value=0.41 Score=42.48 Aligned_cols=179 Identities=9% Similarity=0.102 Sum_probs=105.2
Q ss_pred CCccEEEcCCCcEEEEe-cCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEe
Q 017371 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFL 152 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~ 152 (372)
.-+.++..++|+..++- .|+.+..+| .|+. +.+.......+ ++++++|.+-.|+... +-+..++ ..+ .-.+.
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~ 143 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH 143 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence 35567788899776654 899888888 5543 33444444566 9999999987776544 4466666 222 22221
Q ss_pred eecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCC
Q 017371 153 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 230 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg 230 (372)
.. +. -.-++.+.+.|+. +.++... ..+..|-..|.++.+.+...-+ -..-|.++++|||
T Consensus 144 ~~--~~-~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 144 ED--SH-REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred cC--CC-cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCC
Confidence 11 11 2356677888764 4444322 2556677778776655443222 3345779999999
Q ss_pred CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
. +..+.-.+..+.-++++..+. ...+- ..-....+++.|+ ++|++...
T Consensus 205 s-lcasGgkdg~~~LwdL~~~k~--lysl~--a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 205 S-LCASGGKDGEAMLWDLNEGKN--LYSLE--AFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred C-EEecCCCCceEEEEEccCCce--eEecc--CCCeEeeEEecCC-ceeEeecc
Confidence 7 766655556677777764321 11111 1112456777765 57777653
No 149
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.67 E-value=0.48 Score=45.31 Aligned_cols=137 Identities=11% Similarity=0.048 Sum_probs=71.4
Q ss_pred CeEEcCCCCEEEEeCCCcEEEEcCCC-c--EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCC
Q 017371 122 GLTSTKEGHLIICDNANGLHKVSEDG-V--ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 198 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~~~~g-~--~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~ 198 (372)
++...+||.+++......+++-..+| . +.+.... .....++.+.++|.+|+.. ..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~----~~~l~~v~~~~dg~l~l~g------------------~~ 300 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS----ARRIQNMGWRADGGLWLLT------------------RG 300 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCC----ccceeeeeEcCCCCEEEEe------------------CC
Confidence 44566788777765433344444555 2 3332211 2345678888999999863 34
Q ss_pred CeEEEEeCCCCe------EEEEeC--CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCcee
Q 017371 199 GQLLKYDPSSNI------TTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI 270 (372)
Q Consensus 199 g~v~~~d~~t~~------~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i 270 (372)
|.+++-+.+ ++ +..... .......+.+..|+. +|++... .+.....++.+.-+.....+..++--.++
T Consensus 301 G~l~~S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~--G~v~~s~D~G~tW~~~~~~~~~~~~ly~v 376 (398)
T PLN00033 301 GGLYVSKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGS--GILLRSTDGGKSWKRDKGADNIAANLYSV 376 (398)
T ss_pred ceEEEecCC-CCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECC--CcEEEeCCCCcceeEccccCCCCcceeEE
Confidence 666665433 32 222111 111234566776765 7766533 34445555544322211112222223467
Q ss_pred EEcCCCCEEEEEec
Q 017371 271 NLAPDGTFWIAIIK 284 (372)
Q Consensus 271 ~~d~~G~lwva~~~ 284 (372)
.+..+++.|+....
T Consensus 377 ~f~~~~~g~~~G~~ 390 (398)
T PLN00033 377 KFFDDKKGFVLGND 390 (398)
T ss_pred EEcCCCceEEEeCC
Confidence 77777889988765
No 150
>PTZ00420 coronin; Provisional
Probab=96.67 E-value=0.39 Score=48.13 Aligned_cols=156 Identities=9% Similarity=0.043 Sum_probs=83.8
Q ss_pred CCccEEEcCCCcE-E-EEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEE
Q 017371 80 HPEDASMDKNGVI-Y-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN 150 (372)
Q Consensus 80 ~p~~i~~d~~G~l-~-v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~ 150 (372)
...++++.+++.. . .+..+|.|..|| .++. ..+. ...... ++.++++|+++++... ..+..+| .++ ...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 4567888887753 3 345789999998 4442 2232 223455 8999999998887543 4577788 566 332
Q ss_pred EeeecCCcc-cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeCCccCcce--EEE
Q 017371 151 FLSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANG--VAL 226 (372)
Q Consensus 151 l~~~~~~~~-~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~~~~~~~g--i~~ 226 (372)
+.. ..+.. .....-..+.+++..+++.... ......|..+|..+ ++.......-..+.. ..+
T Consensus 205 l~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 205 FHI-HDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred Eec-ccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 211 11110 0111111223566666653320 00123577777653 222221111111222 235
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
+++.+.+|++..++..|..|++..+
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCC
Confidence 6665668888888888888887543
No 151
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.64 E-value=0.49 Score=42.80 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=37.0
Q ss_pred CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-C-----Cce---E-EEEe-----cCCCcccCeEEcCCCCEEEE
Q 017371 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-D-----GTW---V-NWKF-----IDSQTLVGLTSTKEGHLIIC 134 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~-----g~~---~-~~~~-----~~~~p~~gl~~d~dG~l~v~ 134 (372)
..+..|.+|++.+.|.+|+++ ..+....|+ + |.. . .+.. ..+.|. |+.+......-|+
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-GiVfN~~~~F~vt 93 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-GQVFNGSDTFVVS 93 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-EEEEeCCCceEEc
Confidence 347899999999999999999 456566666 3 322 1 1111 123577 8888754444344
No 152
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.62 E-value=0.84 Score=46.14 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=113.1
Q ss_pred cEEEEecCCeEEEEeCCceEEEEecC---CCcccCeEEcCCCCE--EEEe------CC-CcEEEEcCCC-cEEEeeecCC
Q 017371 91 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHL--IICD------NA-NGLHKVSEDG-VENFLSYVNG 157 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~~g~~~~~~~~~---~~p~~gl~~d~dG~l--~v~~------~~-~gv~~~~~~g-~~~l~~~~~~ 157 (372)
.+|.-. +|.+.+++++......... ..+. ..++.+||+. |+.. .. ..|+..+..+ .+.+. .+
T Consensus 322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~g 396 (591)
T PRK13616 322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---EG 396 (591)
T ss_pred cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---cC
Confidence 566443 7888888744433322211 2334 6778888863 3331 11 2355555333 33331 12
Q ss_pred cccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371 158 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~ 236 (372)
.. ...-.+++|| .||+...... ..-+......+.++.++.+.++... ..-.....+.|++||.++.+.
T Consensus 397 ~~---~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HS---LTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CC---CCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence 11 2234788884 6888632100 0001112245677777666555543 112236678999999988887
Q ss_pred eCCCCeEEE---EEccCCC--CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371 237 ESWKFRCRK---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 311 (372)
Q Consensus 237 ~~~~~~i~~---~~~~g~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~ 311 (372)
.. .+|+. ....+.. +.........+...+..+..-.++.|.|+....
T Consensus 466 ~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~-------------------------- 517 (591)
T PRK13616 466 IG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP-------------------------- 517 (591)
T ss_pred EC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC--------------------------
Confidence 63 46666 3322221 111111222222224567777888887775431
Q ss_pred ccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371 312 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 363 (372)
Q Consensus 312 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~ 363 (372)
...+++++-+|.....+ +.++....+..+.-..+.||+++..+
T Consensus 518 -------~~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 518 -------EHPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred -------CCceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc
Confidence 23467777777664432 33333444555555556788876543
No 153
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.61 E-value=0.46 Score=43.62 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=96.4
Q ss_pred EecCCCCCCCccEEEcCCCcEEEEe--cCCeEEEEe--CCceEEEEe-cCCCcccCeEEcCCC-CEEEEeCCCcEEEEc-
Q 017371 72 KVGEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEG-HLIICDNANGLHKVS- 144 (372)
Q Consensus 72 ~~~~g~~~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~- 144 (372)
.+..|.+...+++++||. +=|+++ .|+.|..|| .|....... -..... |+++.+.- -||-+..+.-|-++|
T Consensus 145 rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEec
Confidence 344566778999999986 455544 677788888 776654332 122345 78887543 355555555688888
Q ss_pred CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc
Q 017371 145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN 222 (372)
Q Consensus 145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~ 222 (372)
+.. ++.+- | -+..+..++..|.-.+.++-. .+..+..+|..+.....++.+...|.
T Consensus 223 e~nkvIR~Yh----G-HlS~V~~L~lhPTldvl~t~g-----------------rDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 223 EYNKVIRHYH----G-HLSGVYCLDLHPTLDVLVTGG-----------------RDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred hhhhhHHHhc----c-ccceeEEEeccccceeEEecC-----------------CcceEEEeeecccceEEEecCCCCcc
Confidence 443 33321 1 123556677777666666532 22233334554444444455554443
Q ss_pred -eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 223 -GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 223 -gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.+...+-.-.+ ++.+.+..|.-+|+..++... ... +.......++..++-+++.+...
T Consensus 281 ~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 281 ASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred eeEEeecCCCce-EEecCCceEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCC
Confidence 33333333224 344455667666664332111 111 11112345566666556555443
No 154
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.60 E-value=0.9 Score=45.34 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=67.6
Q ss_pred EEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCC-----cccCeEEcCCCCEEEEeC------CCcEEEEc-CCCcE
Q 017371 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----TLVGLTSTKEGHLIICDN------ANGLHKVS-EDGVE 149 (372)
Q Consensus 84 i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p~~gl~~d~dG~l~v~~~------~~gv~~~~-~~g~~ 149 (372)
+++. ++++|+++.+|+|+.+| +|+...-...... ....-.+ .+|.++++.. ...|+.+| ++|..
T Consensus 116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 3443 57899999999999999 6765432111110 1101112 2577888753 12477888 67722
Q ss_pred EEe-eecCCc----------------------------ccccccceEEcc-CCcEEEEeCCCCCCCcccccccc--cccC
Q 017371 150 NFL-SYVNGS----------------------------KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDIL--EGKP 197 (372)
Q Consensus 150 ~l~-~~~~~~----------------------------~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~--~~~~ 197 (372)
... ...+.. .-.....+++|+ .|.||+..... ..+..... ...-
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp----~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP----SPWNSHLRPGDNLY 269 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC----CCCCCCCCCCCCcc
Confidence 221 111110 001223568886 46788876431 00111111 1122
Q ss_pred CCeEEEEeCCCCeEEEEeC
Q 017371 198 HGQLLKYDPSSNITTLVAD 216 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~ 216 (372)
...|+.+|.+||+.++..+
T Consensus 270 ~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ceeEEEEccccCCEEEeee
Confidence 4579999999999988653
No 155
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.59 E-value=0.1 Score=45.38 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=84.6
Q ss_pred cccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe---CC-c-----eEEEEec-CCCcccCeEEcCCCCEEEEe
Q 017371 66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DG-T-----WVNWKFI-DSQTLVGLTSTKEGHLIICD 135 (372)
Q Consensus 66 ~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~---~g-~-----~~~~~~~-~~~p~~gl~~d~dG~l~v~~ 135 (372)
.+....+++.| ..+=..|+..++|.||....+ .+++.. .+ + -+++... -++-. .|.+++.|-||..+
T Consensus 22 ~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~ 98 (229)
T PF14517_consen 22 WSDRAITIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVT 98 (229)
T ss_dssp HHHHSEEEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEE
T ss_pred ccchhhhcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEec
Confidence 45567778776 567778999999999998754 688873 21 1 2233222 12333 78999999999887
Q ss_pred CCCcEEEEc-C-CC-cEE---EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE-eCCC
Q 017371 136 NANGLHKVS-E-DG-VEN---FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSS 208 (372)
Q Consensus 136 ~~~gv~~~~-~-~g-~~~---l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~t 208 (372)
....+++.. . ++ ... ......+..-+....|.++++|.||.-+ +++++++. .|+.
T Consensus 99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~ 160 (229)
T PF14517_consen 99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDG 160 (229)
T ss_dssp TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SS
T ss_pred cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCC
Confidence 654577877 2 22 111 1111111222334578889999999854 45678887 4443
Q ss_pred CeE-------EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 209 NIT-------TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 209 ~~~-------~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
..- .+...+...+.-|.+++++. ||.+++ +..|+|+...
T Consensus 161 ~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~p 206 (229)
T PF14517_consen 161 GSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRPP 206 (229)
T ss_dssp TT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES--
T ss_pred CCCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCCc
Confidence 211 11123334455678888886 887754 5678887654
No 156
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.57 E-value=0.12 Score=47.61 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=57.5
Q ss_pred CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC---------e
Q 017371 172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF---------R 242 (372)
Q Consensus 172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~---------~ 242 (372)
.++||.|.. +.. ..++++.||.+++++.=..+.-..++ ++++||++.+|++++.-. -
T Consensus 3 ~rvyV~D~~------------~~~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPV------------FFH-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-G------------GGG-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCc------------ccc-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 468888763 111 23699999999888655444444555 778999999999887332 2
Q ss_pred EEEEEccCCCCcceeeeccCC-----CCCCceeEEcCCC-CEEEEEec
Q 017371 243 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIK 284 (372)
Q Consensus 243 i~~~~~~g~~~~~~~~~~~~~-----~g~p~~i~~d~~G-~lwva~~~ 284 (372)
|..|+..+-.. ..|+.+... ..++..+++..|| .+||.+..
T Consensus 69 v~~~D~~TL~~-~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 69 VEIWDTQTLSP-TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EEEEETTTTEE-EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred EEEEecCcCcc-cceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence 55566544211 112222111 1256778888888 57777765
No 157
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.54 E-value=0.18 Score=47.06 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=85.4
Q ss_pred ecCCCcccCeEEcCCCCEEEEeC-C--CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccc
Q 017371 114 FIDSQTLVGLTSTKEGHLIICDN-A--NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189 (372)
Q Consensus 114 ~~~~~p~~gl~~d~dG~l~v~~~-~--~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~ 189 (372)
...+... -+.|.++|+-..+.+ + ..++.+..++ ++...+ ..|- ...+..|.+.||.+-.++=.
T Consensus 222 ~htdEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg---------- 288 (519)
T KOG0293|consen 222 DHTDEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACG---------- 288 (519)
T ss_pred hCCCcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecC----------
Confidence 3445566 777888887333322 1 2345555555 333222 2221 12345678888887666521
Q ss_pred cccccccCCCeEEEEeCCCCeEEEEe-CCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371 190 LDILEGKPHGQLLKYDPSSNITTLVA-DGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 267 (372)
Q Consensus 190 ~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 267 (372)
....+...|.++|...... .++ ..+...+|.|||.. +|+.+.+..+...+++|+..+..+..-. + ..
T Consensus 289 -------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~--~-~v 357 (519)
T KOG0293|consen 289 -------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRD--P-KV 357 (519)
T ss_pred -------chHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhccccccc--c-ee
Confidence 2233777788888765543 232 33456789999985 6677777889999999875554433221 1 24
Q ss_pred ceeEEcCCCC-EEEEEec
Q 017371 268 DNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 268 ~~i~~d~~G~-lwva~~~ 284 (372)
..+++..||. ++..+..
T Consensus 358 ~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVD 375 (519)
T ss_pred EEEEEcCCCcEEEEEecc
Confidence 6788999995 4444433
No 158
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.53 E-value=0.34 Score=41.52 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=74.8
Q ss_pred CCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEE
Q 017371 127 KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLK 203 (372)
Q Consensus 127 ~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~ 203 (372)
..+.-|.++ ..++.++ .+. ...+..... ..+.+++..|+|+- .+.. +.....+..
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~----------------g~~~~~v~l 87 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIY----------------GSMPAKVTL 87 (194)
T ss_pred cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEE----------------ccCCcccEE
Confidence 444444433 2477776 333 443322211 13678999999864 3321 112336777
Q ss_pred EeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 017371 204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281 (372)
Q Consensus 204 ~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva 281 (372)
||.+...+..+. -...|.+.|+|+|+++.++..++ +.|..++.+.. +............+..+++|++.++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence 777633333332 23457899999999888887543 35777776522 2222222223567889999998887
Q ss_pred Eec
Q 017371 282 IIK 284 (372)
Q Consensus 282 ~~~ 284 (372)
...
T Consensus 161 a~t 163 (194)
T PF08662_consen 161 ATT 163 (194)
T ss_pred EEe
Confidence 654
No 159
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.48 E-value=0.039 Score=49.43 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=63.6
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE---EeCCccCcceEEEecCCCEEEEEeC
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~ 238 (372)
.++.+.+.|...|.++-+ .++.|-.+|...-..+. +......-..+.++|.|.+|.+..
T Consensus 174 evn~l~FHPre~ILiS~s-----------------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGS-----------------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEecc-----------------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 567899999999998744 56677777754211111 223333345788999999777654
Q ss_pred CCCeEEEEEccCCCCcceeeeccC-----CCCCCceeEEcCCCCEEEEEec
Q 017371 239 WKFRCRKYWLKGERKGKLETFAEN-----LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 239 ~~~~i~~~~~~g~~~~~~~~~~~~-----~~g~p~~i~~d~~G~lwva~~~ 284 (372)
....+..|++++ ...|... ..+....+...+.|++||....
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 455677777754 2334322 2223445778999999998765
No 160
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.47 E-value=0.17 Score=47.61 Aligned_cols=156 Identities=16% Similarity=0.059 Sum_probs=77.2
Q ss_pred CCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC--ceeEEc
Q 017371 197 PHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLA 273 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p--~~i~~d 273 (372)
+...+|.+|.++++.+++-++- ...-|..++++.+.+|+... +..|+++++++.+ ...++. ...++- .....+
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVAN 133 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE---TTEEEEEEEEE-
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEE-CCcccccccceeeC
Confidence 5567999999999999886653 22347888899898876553 4579999997643 222322 222222 234468
Q ss_pred CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC--CC-eec--cce
Q 017371 274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT--GQ-LMS--FVT 347 (372)
Q Consensus 274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~--g~-~~~--~~t 347 (372)
+|+...++....+.. ...+.++...+++.. ..+..+|+.++- .|+....+.+.. |- .++ .++
T Consensus 134 ~d~t~~~g~e~~~~d-~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 134 SDCTKLVGIEISRED-WKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTSSEEEEEEEEGGG------SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred CCccEEEEEEEeehh-ccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 899998887654332 222344556777666 344567777774 455544444432 10 000 112
Q ss_pred ee---EEE-----CCEEEEEeCCCCeEEE
Q 017371 348 SG---LQV-----DNHLYVISLTSNFIGK 368 (372)
Q Consensus 348 ~~---~~~-----~g~L~igs~~~~~i~~ 368 (372)
-+ .|. +.+||+....+.-+..
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCccee
Confidence 22 222 2488988877655443
No 161
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.45 E-value=0.06 Score=49.22 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 276 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G 276 (372)
.++.|+.||..+++...-...-..+|+|+|.| +.+.+++...+..++.||+..-. ....++.+.... .-.+.+.+-|
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsA-V~dVdfsptG 284 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSA-VMDVDFSPTG 284 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhc-ccchhhccccee-EEEeccCCCc
Confidence 46678889987655433223335689999999 66788888888899999875321 111222222111 2345567778
Q ss_pred CEEEEEe
Q 017371 277 TFWIAII 283 (372)
Q Consensus 277 ~lwva~~ 283 (372)
.=+|+..
T Consensus 285 ~Efvsgs 291 (433)
T KOG0268|consen 285 QEFVSGS 291 (433)
T ss_pred chhcccc
Confidence 6666543
No 162
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=1.1 Score=46.19 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=83.9
Q ss_pred CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEE
Q 017371 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENF 151 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l 151 (372)
|......++.+++.-.+.+++ .|+.|..|| +. .++++...-++-+ -++..|..+||.+.++.|+.++.-+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkle----- 321 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLE----- 321 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEc-----
Confidence 556678889999877788887 688888888 33 4666666667778 8999999999999888887666411
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC------CccCcceEE
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFYFANGVA 225 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~------~~~~~~gi~ 225 (372)
+.....++..++-+|+ ....|+.+|..+.+-..++. ....+..+.
T Consensus 322 ---------RErpa~~v~~n~LfYv--------------------kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 322 ---------RERPAYAVNGNGLFYV--------------------KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred ---------ccCceEEEcCCEEEEE--------------------ccceEEeeeccccccceeEeccCCCcccCCcceee
Confidence 0111345544444555 23467778876533333221 123345688
Q ss_pred EecCCCEEEEEe
Q 017371 226 LSRDEDYVVVCE 237 (372)
Q Consensus 226 ~~~dg~~l~v~~ 237 (372)
+.|..+.+.++.
T Consensus 373 YNpae~~vlics 384 (1202)
T KOG0292|consen 373 YNPAENAVLICS 384 (1202)
T ss_pred eccccCeEEEEe
Confidence 889888888884
No 163
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.40 E-value=1 Score=45.58 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=94.3
Q ss_pred CCCccEEEcCCCc--EEEEe-------cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCC-CEEEEeCCCcEEEEc-CC
Q 017371 79 NHPEDASMDKNGV--IYTAT-------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-ED 146 (372)
Q Consensus 79 ~~p~~i~~d~~G~--l~v~~-------~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~-~~ 146 (372)
..+.+.++.++|. .|+.. ....|+..+ ++..+.+.. +.... .-.+++|| .||+......+.++. .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence 4567788888884 34442 123566666 555444432 22223 66799995 588775443344444 32
Q ss_pred C-cEEEeeecCCcc-----cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEE---EeCCCCeEEE---
Q 017371 147 G-VENFLSYVNGSK-----LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL--- 213 (372)
Q Consensus 147 g-~~~l~~~~~~~~-----~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~t~~~~~--- 213 (372)
+ -+.......+.. ...+..+.+.+||+ |.+.- .++|+. ...+.|+.+.
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeeccc
Confidence 2 222111111110 12577889999994 55531 245555 4444455333
Q ss_pred --EeCCccC-cceEEEecCCCEEEEEeC-CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 214 --VADGFYF-ANGVALSRDEDYVVVCES-WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 214 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+...+.. +..+.|..++. |++... .+..++++.++|..... ....++......++-++ +.+|+++..
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~-~~iyv~~~~ 559 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP-STVYVTDAR 559 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCccccc--cCCCCccCceEEEecCC-ceEEEEcCC
Confidence 3344444 46788998887 556443 44569999998863221 01111111112233332 468887765
No 164
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.39 E-value=0.047 Score=51.61 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=88.8
Q ss_pred CCccEEEcCCC-cEE-EEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cEEE
Q 017371 80 HPEDASMDKNG-VIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~-v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~~l 151 (372)
-|.++-+-+++ +++ +|..+++|..|| .|++ ..+....+..+ .|.|-++|+-+|+....+ +..++ ..+ ...+
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence 47778787777 555 556899999999 5653 33333444556 888889998888876643 55555 333 1111
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC---CeEEEEeCC---ccCcceEE
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---NITTLVADG---FYFANGVA 225 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t---~~~~~~~~~---~~~~~gi~ 225 (372)
. ....++....++..|+|..+.+.+ -..+++.+.... -..+....+ -..+-.+.
T Consensus 380 i---~~~~~hsmP~~~~~P~~~~~~aQs-----------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 380 I---ADPEMHTMPCLTLHPNGKWFAAQS-----------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred h---cchhhccCcceecCCCCCeehhhc-----------------cCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 1 112234555788888888666543 234455543210 000011122 12355788
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
++|||++| ++..+.++++.|+.++.
T Consensus 440 fSpDG~~l-~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 440 FSPDGRTL-CSGDSDGKVNFWDWKTT 464 (503)
T ss_pred EcCCCCeE-EeecCCccEEEeechhh
Confidence 99999955 45556778999887654
No 165
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.35 E-value=0.099 Score=48.92 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=86.9
Q ss_pred CccEEEcCCCcEEEE-ecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-C-CC-cEEEe
Q 017371 81 PEDASMDKNGVIYTA-TRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-E-DG-VENFL 152 (372)
Q Consensus 81 p~~i~~d~~G~l~v~-~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~-~g-~~~l~ 152 (372)
-.+.++-|||.|+.+ +.||.|..|| .+ .+..|..- ..|...|.|..+|-..++....+ |..+| + .. +..+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 456788889877654 3788777777 22 34444332 23444899988786555555556 88888 3 33 44332
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe---CCccCcceEEEecC
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRD 229 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~---~~~~~~~gi~~~~d 229 (372)
.. .....+.+.+|..|+..+.-. .+=+||.++-.+++++.+. ......+++.|...
T Consensus 429 l~----~~~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 LD----EKKEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred cc----ccccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 21 123578999999998666421 3446888887666665542 22234678888765
Q ss_pred CCEEEEEeCCCCeEEEE
Q 017371 230 EDYVVVCESWKFRCRKY 246 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~ 246 (372)
- .|++.++.+++.++
T Consensus 488 a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 488 A--QYLASTSMDAILRL 502 (506)
T ss_pred c--eEEeeccchhheEE
Confidence 4 45555566666654
No 166
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.33 E-value=0.85 Score=41.97 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=81.4
Q ss_pred cEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEeeec
Q 017371 83 DASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLSYV 155 (372)
Q Consensus 83 ~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~~~ 155 (372)
.++..|+.++.++. .|..-+.|+ +|++-.-..........+.|..||.+..+..-.|.+++ . .+| ...+...
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e- 147 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE- 147 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc-
Confidence 46666754444332 444455555 56532222222233337888899987776544564444 4 455 2223211
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce-EEEecCCCEEE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVV 234 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g-i~~~~dg~~l~ 234 (372)
...+.-|...|.+.|.++ +..+|.||.+....+....+..+...|-- =.|.|||+.+.
T Consensus 148 ----~~dieWl~WHp~a~illA-----------------G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 148 ----VEDIEWLKWHPRAHILLA-----------------GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred ----cCceEEEEecccccEEEe-----------------ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 123345666777777664 44678888887665455555555444322 24789999666
Q ss_pred EEeCCCCeEEEEEccC
Q 017371 235 VCESWKFRCRKYWLKG 250 (372)
Q Consensus 235 v~~~~~~~i~~~~~~g 250 (372)
.... +..|..+++.+
T Consensus 207 tgy~-dgti~~Wn~kt 221 (399)
T KOG0296|consen 207 TGYD-DGTIIVWNPKT 221 (399)
T ss_pred EEec-CceEEEEecCC
Confidence 5554 66788887754
No 167
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.31 E-value=0.2 Score=45.96 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=93.5
Q ss_pred CCCCCCCccEEEcCCC--cEEEEecCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--
Q 017371 75 EGSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-- 147 (372)
Q Consensus 75 ~g~~~~p~~i~~d~~G--~l~v~~~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-- 147 (372)
.|.-.|..++|-.++- .+..|..||.|.-|+ .. ....+..-.|... ||+++....+++++ ++.|-.+.-+|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgd-DKtvK~wk~~~~p 140 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGD-DKTVKQWKIDGPP 140 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecC-CcceeeeeccCCc
Confidence 4555677888888765 566677899999998 33 3444444445566 99999744455554 34455554333
Q ss_pred cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEEEeCCccCcceEEE
Q 017371 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVAL 226 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~~~~~~~~~~gi~~ 226 (372)
...+... ....+|.-...+.++.| ....|-.+|..... +..+..+...-..+-+
T Consensus 141 ~~tilg~------s~~~gIdh~~~~~~FaT-------------------cGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 141 LHTILGK------SVYLGIDHHRKNSVFAT-------------------CGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred ceeeecc------ccccccccccccccccc-------------------cCceeeecccccCCccceeecCCCceeEEec
Confidence 2222110 01123333233333332 11223444432111 1112223222245667
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.|-...++.+......|..||+...+.-. .+.. .-.++.|+..|++..+++...
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~---~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLK-KVIL---TMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccc-eeee---eccccceecCccccceeeccc
Confidence 77777677776667779999986432111 1111 113677888887766666544
No 168
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.30 E-value=0.046 Score=53.11 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=44.6
Q ss_pred ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc--CcceEEEecCCCEEEEE
Q 017371 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVC 236 (372)
Q Consensus 159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~--~~~gi~~~~dg~~l~v~ 236 (372)
-+..|.+|++|+.|+||+......=...+. .. +-..+..=|+.+++++.+..+-. .-.|.+|+||++.+||.
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 456799999999999999865311000000 00 11123334566677666554322 34589999999999986
Q ss_pred e
Q 017371 237 E 237 (372)
Q Consensus 237 ~ 237 (372)
-
T Consensus 572 v 572 (616)
T COG3211 572 V 572 (616)
T ss_pred e
Confidence 4
No 169
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.22 Score=44.93 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCCCCCCccEEEcCCCcEEE-EecCCeEEEEe--CCceEEEEe---c-----CCCcccCeEEcCCCCEEEEeCCCc-EEE
Q 017371 75 EGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVNWKF---I-----DSQTLVGLTSTKEGHLIICDNANG-LHK 142 (372)
Q Consensus 75 ~g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~~~~---~-----~~~p~~gl~~d~dG~l~v~~~~~g-v~~ 142 (372)
-|.-..+|+..+.|||...+ |+.||.|-.|+ +|+++.-.. . ...+...+.|..|..+..+.+..| +..
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 35557899999999996554 55899999998 776553110 0 012222666666665544433333 222
Q ss_pred Ec-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe-CCCCeEEEEeC-C
Q 017371 143 VS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITTLVAD-G 217 (372)
Q Consensus 143 ~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d-~~t~~~~~~~~-~ 217 (372)
+. .+| ++.+.. .....+..+.+..|+.-..+.+ .+ ...|+. .++|+.-.-.. .
T Consensus 290 Wri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~s-----------------fD-~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSAS-----------------FD-QTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred EEEecchHHHHhhh----hhccCeeEEEEccCcchhhccc-----------------cc-ceEEEeccccchhHHHhcCc
Confidence 22 334 332210 1112344566777764333322 11 223332 23343222122 2
Q ss_pred ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 218 FYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
..+-|-..+++||.+++-+. .+..|..++.+
T Consensus 348 sSyvn~a~ft~dG~~iisaS-sDgtvkvW~~K 378 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISAS-SDGTVKVWHGK 378 (508)
T ss_pred cccccceEEcCCCCeEEEec-CCccEEEecCc
Confidence 34567788999998666554 45556655543
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.45 Score=47.07 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=83.7
Q ss_pred cEEEcCCCcEE-EEe-cCCeEEEEe-CCceEEEE--e--cCCCcccCeEEcCCCC-EEEEe-CCCcEEEEc-CCC-cEEE
Q 017371 83 DASMDKNGVIY-TAT-RDGWIKRLQ-DGTWVNWK--F--IDSQTLVGLTSTKEGH-LIICD-NANGLHKVS-EDG-VENF 151 (372)
Q Consensus 83 ~i~~d~~G~l~-v~~-~~g~i~~~~-~g~~~~~~--~--~~~~p~~gl~~d~dG~-l~v~~-~~~gv~~~~-~~g-~~~l 151 (372)
+-++.|+|++. +++ ..=+|+++. ++.++... . ....+...+.+.-|++ ++++. ....+..++ ... ...+
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 45666788654 444 566788887 55433221 1 1111111444444443 33333 223466666 333 2222
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecC-
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRD- 229 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~d- 229 (372)
....+...-..+..|++.++|+ |++..+ ..|.|+.|+.++++.+.+...+..+. ..+++|.
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~-yiaa~~----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGN-YIAAIS----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV 529 (691)
T ss_pred hccccccCCCcceeEEEcCCCC-EEEEEe----------------ccceEEEEEcccceeecchhccCcceeeeeccccc
Confidence 2221222334677899999997 443322 57889999999888887765554432 4556754
Q ss_pred CCEEEEEeCCCCeEEEEEccCC
Q 017371 230 EDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~ 251 (372)
.+.+.++ +.++.++-|++...
T Consensus 530 ~~~lvva-ts~nQv~efdi~~~ 550 (691)
T KOG2048|consen 530 RNRLVVA-TSNNQVFEFDIEAR 550 (691)
T ss_pred cCcEEEE-ecCCeEEEEecchh
Confidence 4445555 45778999998543
No 171
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.89 Score=41.23 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=74.0
Q ss_pred CCCccEEEcCCCcEEE-EecCCeEEEEe-CC----ce--EEEEecCCCcccCeEEcCCCCEEEEeCC--Cc--EEEEc--
Q 017371 79 NHPEDASMDKNGVIYT-ATRDGWIKRLQ-DG----TW--VNWKFIDSQTLVGLTSTKEGHLIICDNA--NG--LHKVS-- 144 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v-~~~~g~i~~~~-~g----~~--~~~~~~~~~p~~gl~~d~dG~l~v~~~~--~g--v~~~~-- 144 (372)
....++++.+||.-+. ...|+.|..|+ +. +. -+..-..+.|. -++|.||-+-+|..-. .. ++..+
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 4677899999995444 44777777776 21 11 11122456888 8999988763333222 22 44444
Q ss_pred CCC-cEE--Eeee-cCCccccccc--ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371 145 EDG-VEN--FLSY-VNGSKLRFAN--DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF 218 (372)
Q Consensus 145 ~~g-~~~--l~~~-~~~~~~~~~~--~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~ 218 (372)
.+| ... +... ..-..-+... ++-+. ++..|+...+ ....|+.++.+......+.++.
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq 228 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQ 228 (420)
T ss_pred ccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEEecCCceeeeecccc
Confidence 345 211 1111 1111111111 23332 3444554332 3456888888733333333333
Q ss_pred cCcceEEEecCCCEEEEEeCCC
Q 017371 219 YFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 219 ~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
....-.+++|+|+++.++..+-
T Consensus 229 ~~n~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred ccccceeeCCCCcEEEEecCCC
Confidence 3334467999999887776543
No 172
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.23 E-value=1.2 Score=42.68 Aligned_cols=128 Identities=9% Similarity=-0.061 Sum_probs=64.8
Q ss_pred CCeEEEEeCCCCe-EEEEeC-CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc---C-CCCCCceeE
Q 017371 198 HGQLLKYDPSSNI-TTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE---N-LPGAPDNIN 271 (372)
Q Consensus 198 ~g~v~~~d~~t~~-~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~-~~g~p~~i~ 271 (372)
.|.+++-+...+. .+.+.. ....-.++.+.+|++ +|++.. ...+++-.-.+. ..+...|.. . ....+.++.
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~ 334 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLTR-GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVG 334 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEeC-CceEEEecCCCC-cccccceeecccCCCCcceEEEE
Confidence 4556654433222 233221 122235677888887 555543 344655443332 111101211 1 111245577
Q ss_pred EcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE
Q 017371 272 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ 351 (372)
Q Consensus 272 ~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~ 351 (372)
..+++++|++... |.+++-...|+--......++. ......+.+
T Consensus 335 ~~~d~~~~a~G~~-----------------------------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f 378 (398)
T PLN00033 335 YRSKKEAWAAGGS-----------------------------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKF 378 (398)
T ss_pred EcCCCcEEEEECC-----------------------------------CcEEEeCCCCcceeEccccCCC-CcceeEEEE
Confidence 8889999998876 4555555556553332212221 123456775
Q ss_pred E-CCEEEEEeCCCC
Q 017371 352 V-DNHLYVISLTSN 364 (372)
Q Consensus 352 ~-~g~L~igs~~~~ 364 (372)
. +++.|+...++-
T Consensus 379 ~~~~~g~~~G~~G~ 392 (398)
T PLN00033 379 FDDKKGFVLGNDGV 392 (398)
T ss_pred cCCCceEEEeCCcE
Confidence 4 589999987654
No 173
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.23 E-value=0.016 Score=50.26 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=65.9
Q ss_pred cccccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe---CCc-------eEEE-EecCCCcccCeEEcCCCCEE
Q 017371 64 ATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WVNW-KFIDSQTLVGLTSTKEGHLI 132 (372)
Q Consensus 64 ~~~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~---~g~-------~~~~-~~~~~~p~~gl~~d~dG~l~ 132 (372)
++.....+.|..|....=..|++|+.|.||.-+.+|.|+|.. ++. .+.+ ...-+... .+.++++|.||
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY 144 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLY 144 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EE
T ss_pred ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEE
Confidence 344456677887733333489999999999999999999987 221 1222 12223344 68889999999
Q ss_pred EEeCCCcEEEEc-CCC-------cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371 133 ICDNANGLHKVS-EDG-------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 204 (372)
Q Consensus 133 v~~~~~gv~~~~-~~g-------~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~ 204 (372)
..+....+++.. +++ ...+.. +........|.+.++|+||..+ .+|.|||+
T Consensus 145 ~i~~dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~ 203 (229)
T PF14517_consen 145 AITPDGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRG 203 (229)
T ss_dssp EEETTE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEE
T ss_pred EEcCCCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEe------------------cCCEEecc
Confidence 998654477764 322 111211 1112234568888999999853 46889998
Q ss_pred eCCC
Q 017371 205 DPSS 208 (372)
Q Consensus 205 d~~t 208 (372)
.+.+
T Consensus 204 ~~p~ 207 (229)
T PF14517_consen 204 RPPQ 207 (229)
T ss_dssp S---
T ss_pred CCcc
Confidence 7654
No 174
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.22 E-value=0.46 Score=47.69 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=101.5
Q ss_pred EEEcCCCcEEEEe-cCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc---EEEEcCCC-cEEEeeecC
Q 017371 84 ASMDKNGVIYTAT-RDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG-VENFLSYVN 156 (372)
Q Consensus 84 i~~d~~G~l~v~~-~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g---v~~~~~~g-~~~l~~~~~ 156 (372)
..+.|+.++.+.. .|+.+.-|. +- .-...-.+...|.-.+.|.|-|--|++..+.+ ++..|... .++++..
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh-- 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH-- 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc--
Confidence 4455665555554 455554444 21 11111112233432466777776555543333 33333222 4433222
Q ss_pred CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCCEEEE
Q 017371 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVV 235 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~~l~v 235 (372)
..-..-+.+.|+.+...|- | .+..|..+|..+|....+..+...|. .++++|+|++|-
T Consensus 535 ---lsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La- 593 (707)
T KOG0263|consen 535 ---LSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA- 593 (707)
T ss_pred ---ccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe-
Confidence 2234457888888754442 2 34556667777787777777766664 688999998554
Q ss_pred EeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecC-chhHHHHhh
Q 017371 236 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL-DARRMKILN 294 (372)
Q Consensus 236 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~-~~~~~~~~~ 294 (372)
+....+.|..+++.+.+. ...+..+ .+....+.+..||++.++.... ....||+..
T Consensus 594 Sg~ed~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecccCCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 444456677777755321 1122222 4456788999999999988653 234555544
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.19 E-value=0.18 Score=50.90 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred CCccEEEcCCCc-EEEEecCCeEEEEe--CCceE-EEE--ecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEe
Q 017371 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFL 152 (372)
Q Consensus 80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~-~~~--~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~ 152 (372)
...+++++.=|+ .++|...|.|-+|+ .|..+ .+. .....+..|+++|.-+++.|+....|++.+- -.+.. +.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~ 528 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LK 528 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-ee
Confidence 345677777664 56777899999998 55332 221 1122343399999989999988778887765 22211 11
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCC
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDED 231 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~ 231 (372)
...... ..+..+.......+.+. ....-.|..||..|.++.....+ -..-+.++|+|||+
T Consensus 529 ~~l~l~--~~~~~iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 529 KSLRLG--SSITGIVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred eeeccC--CCcceeeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 111100 12223333222222211 11233577888765554333332 33457899999999
Q ss_pred EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
++..+.. +..|..||+.....- ..+. ...-+-++.+.+.|.+..+...
T Consensus 590 Wlisasm-D~tIr~wDlpt~~lI--D~~~--vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 590 WLISASM-DSTIRTWDLPTGTLI--DGLL--VDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEEeec-CCcEEEEeccCccee--eeEe--cCCcceeeEECCCCCEEEEEEe
Confidence 8877764 567888888654222 1221 1112456666777765555443
No 176
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.35 Score=48.74 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=83.7
Q ss_pred CeEEcCCCCEEEEeCCCcEEEEc--CCC-cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccC
Q 017371 122 GLTSTKEGHLIICDNANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
.|.+.+++-|+-+..++-|..+. .+. +..+.+. .++..++|.| |.+.+++ +.-
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiS-----------------GSL 430 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFIS-----------------GSL 430 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEee-----------------ccc
Confidence 67777777666665555555555 233 5555432 3566788887 4566665 224
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC----C-CCCCceeEE
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----L-PGAPDNINL 272 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~----~-~g~p~~i~~ 272 (372)
+|.+..++....++....+--..-..+++.|||++.+|.. .++.+..|+..+.+......+... . .+...|+.+
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 5555555554455544444334456899999999666654 566788888777643332211111 1 113455555
Q ss_pred cCCC--CEEEEEecCchhHHH
Q 017371 273 APDG--TFWIAIIKLDARRMK 291 (372)
Q Consensus 273 d~~G--~lwva~~~~~~~~~~ 291 (372)
.+.. .+.|++...|..++|
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred cCCCCCeEEEecCCCceEEEe
Confidence 4322 588888876544433
No 177
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.06 E-value=0.7 Score=44.07 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=88.2
Q ss_pred CCcEEEEe-cCCeEEEEe-C-C--c--eEEEEe--------cCCCcccCeEEcCCCCEEEEeCC-------CcEEEEcCC
Q 017371 89 NGVIYTAT-RDGWIKRLQ-D-G--T--WVNWKF--------IDSQTLVGLTSTKEGHLIICDNA-------NGLHKVSED 146 (372)
Q Consensus 89 ~G~l~v~~-~~g~i~~~~-~-g--~--~~~~~~--------~~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~~~ 146 (372)
..+|++.. ..++|+.+| . . + +..+.. ....|. -....++|+++|+..+ .|++.+|.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 34788877 788999999 2 1 2 222221 224566 5666789999987532 258888855
Q ss_pred CcEEEee-ecCCcccccccceEEccCCcEEEEeCCCCCCCccc------ccccccccCCCeEEEEeCCCCeEEEEeCCc-
Q 017371 147 GVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY------CLDILEGKPHGQLLKYDPSSNITTLVADGF- 218 (372)
Q Consensus 147 g~~~l~~-~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~------~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~- 218 (372)
.+++... ..+.....+-.++-..+..++.+|.+ |+.-.. ..++..+.-..+|..+|-.+.+.....+--
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 4333322 11222335667888888888888753 332211 122233333457889998877776654322
Q ss_pred --cCcceEE--EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc------------C-------CCCCCceeEEcCC
Q 017371 219 --YFANGVA--LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE------------N-------LPGAPDNINLAPD 275 (372)
Q Consensus 219 --~~~~gi~--~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~------------~-------~~g~p~~i~~d~~ 275 (372)
..|--|. .+|+..+=|+.......|++|..+....-..+..++ . .|+++..|.+.-|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 1222233 345666777766667789988763221111111111 0 1566788888777
Q ss_pred C-CEEEEEec
Q 017371 276 G-TFWIAIIK 284 (372)
Q Consensus 276 G-~lwva~~~ 284 (372)
. .|||+++.
T Consensus 323 DrfLYvs~W~ 332 (461)
T PF05694_consen 323 DRFLYVSNWL 332 (461)
T ss_dssp S-EEEEEETT
T ss_pred CCEEEEEccc
Confidence 7 69999998
No 178
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.7 Score=42.58 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=67.4
Q ss_pred ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCC
Q 017371 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 239 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~ 239 (372)
..+..|...+||.+|++-+- .+..+...|+++++...+. .++..-.-+.|+|||.+++.+..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~- 258 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC- 258 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-
Confidence 45567888899999998552 4557888899988766654 33333334679999997776643
Q ss_pred CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371 240 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 240 ~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~ 284 (372)
++++++|.... ....+.+. ..+|...+-+-+++|. |.++..+
T Consensus 259 -davfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 259 -DAVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred -cceeeeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 46888884332 22334443 3445666777899995 4555443
No 179
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.01 E-value=0.27 Score=47.20 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=77.9
Q ss_pred CeEEcCCCCEEEE-eCCCcEEEEcCCC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccccc
Q 017371 122 GLTSTKEGHLIIC-DNANGLHKVSEDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 196 (372)
Q Consensus 122 gl~~d~dG~l~v~-~~~~gv~~~~~~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~ 196 (372)
.+++|+.|.-+++ ..+.-+..+|=+| .+.+....+. ..+.++.+.+.+.|.-++.-+
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~-E~h~i~sl~ys~Tg~~iLvvs----------------- 233 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC-ETHQINSLQYSVTGDQILVVS----------------- 233 (641)
T ss_pred EeeecCCCceeeeccccceEEEEecccccccchhhhccCcc-cccccceeeecCCCCeEEEEe-----------------
Confidence 8999999955554 3345677777333 2222211122 235677888887775443322
Q ss_pred CCCeEEEEeCCCCeEEEEeCC------ccC-------cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC
Q 017371 197 PHGQLLKYDPSSNITTLVADG------FYF-------ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL 263 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~------~~~-------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 263 (372)
++.....+|-+..++.....+ +.. -+..+|+|+.+..+.+.+....+..++++..+ .+.+++....
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeecc
Confidence 223334445443333222222 111 23457899988888877767666666665543 5555554332
Q ss_pred CC----CCceeEEcCCCCEEEEE
Q 017371 264 PG----APDNINLAPDGTFWIAI 282 (372)
Q Consensus 264 ~g----~p~~i~~d~~G~lwva~ 282 (372)
.+ .|...+.++||++..+.
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAag 335 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAG 335 (641)
T ss_pred CCCcccCceeeecCCCcchhhhc
Confidence 22 24557789999874443
No 180
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.72 Score=43.71 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=82.3
Q ss_pred ccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-C-------CC-c
Q 017371 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-E-------DG-V 148 (372)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~-------~g-~ 148 (372)
.+++-+++|+..++. ..|.||.|. .|+.-.+....=++++.|.|..||..+++....| |+.+. - ++ .
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 457777899777776 788999998 6753222111112333788888898888866554 44333 0 11 1
Q ss_pred EEEeeecCCcccccccceEEccCC---cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG---~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~ 225 (372)
..+... .+- ...+.++.++..| ++|- ...+..+..+|...|..-.-..--..++.++
T Consensus 165 ~p~~~f-~~H-tlsITDl~ig~Gg~~~rl~T------------------aS~D~t~k~wdlS~g~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 165 KPLHIF-SDH-TLSITDLQIGSGGTNARLYT------------------ASEDRTIKLWDLSLGVLLLTITFPSSIKAVA 224 (476)
T ss_pred cceeee-ccC-cceeEEEEecCCCccceEEE------------------ecCCceEEEEEeccceeeEEEecCCcceeEE
Confidence 111100 000 0123344444332 3332 2244556667777675443333334457899
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccC
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
++|-++.+|+.. ..+.|+.+.+.+
T Consensus 225 lDpae~~~yiGt-~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 225 LDPAERVVYIGT-EEGKIFQNLLFK 248 (476)
T ss_pred EcccccEEEecC-CcceEEeeehhc
Confidence 999998777765 456788776643
No 181
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.97 E-value=0.56 Score=43.89 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=82.2
Q ss_pred CccEEEcCCCcEEEEe-cCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEcCCC--cEEEee
Q 017371 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVSEDG--VENFLS 153 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~~~g--~~~l~~ 153 (372)
..-|...||.+-.++. .+--+..+| .|.. ..+....+....+.++-|||.=+|+.. ++++..++.+| ...+
T Consensus 272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W-- 349 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW-- 349 (519)
T ss_pred eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc--
Confidence 3346666666544444 333355555 4443 223333233322788889996566644 46788888666 2222
Q ss_pred ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEE
Q 017371 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 233 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l 233 (372)
.+.+...+.++++.+||+-.++.. .+..+..|+..+..-.-+.+.-..-..+.++.|+++.
T Consensus 350 --~gvr~~~v~dlait~Dgk~vl~v~-----------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 350 --EGVRDPKVHDLAITYDGKYVLLVT-----------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA 410 (519)
T ss_pred --cccccceeEEEEEcCCCcEEEEEe-----------------cccceeeechhhhhhhccccccCceeEEEEcCCCcEE
Confidence 343334577999999996333311 2334555654422211122222333568899999855
Q ss_pred EEEeCCCCeEEEEEccCC
Q 017371 234 VVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 234 ~v~~~~~~~i~~~~~~g~ 251 (372)
+ .+-....+.-+++...
T Consensus 411 L-vnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 411 L-VNLQDQEIHLWDLEEN 427 (519)
T ss_pred E-EEcccCeeEEeecchh
Confidence 4 4455677888887643
No 182
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.94 E-value=0.89 Score=42.06 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=71.5
Q ss_pred CcEEEEe-----cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-----Cc-----EEEEcCCCcEEE
Q 017371 90 GVIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-----NG-----LHKVSEDGVENF 151 (372)
Q Consensus 90 G~l~v~~-----~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-----~g-----v~~~~~~g~~~l 151 (372)
.++|+.+ ..++++.+| ++++.--... +.-- .+.+++||+ +|+++.. +| |-.+|...+...
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~-g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDT-GFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEE-ESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeec-ccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 3677776 236788888 4443221121 1112 566788885 7777643 12 334553332222
Q ss_pred ee-ecCCc----ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371 152 LS-YVNGS----KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225 (372)
Q Consensus 152 ~~-~~~~~----~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~ 225 (372)
.+ ..+.. .....+.+++..|| .+||.+.+ +...|-.+|.+.+++.. ....|-...
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kvv~---ei~~PGC~~ 141 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKVVG---EIDTPGCWL 141 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEEEE---EEEGTSEEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCceee---eecCCCEEE
Confidence 21 12221 12456778888888 57776654 77889999998777643 223333332
Q ss_pred EecCCCEEEEEeCCCCeEEEEEcc
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
+.|-++.-+.+-++++.+..+.++
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEET
T ss_pred EEecCCCceEEEecCCceEEEEEC
Confidence 333221123344455667777776
No 183
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.94 E-value=1.4 Score=41.61 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=73.5
Q ss_pred eEEEEeCCCCeEEEEe-------CCccCcceEEEec---CCCEEEEEeCCCCeEEEEEccCCCCcc-----eeeeccCCC
Q 017371 200 QLLKYDPSSNITTLVA-------DGFYFANGVALSR---DEDYVVVCESWKFRCRKYWLKGERKGK-----LETFAENLP 264 (372)
Q Consensus 200 ~v~~~d~~t~~~~~~~-------~~~~~~~gi~~~~---dg~~l~v~~~~~~~i~~~~~~g~~~~~-----~~~~~~~~~ 264 (372)
++|++|++++.++.+. ..+..+.|+|+.. +|....+.....+++..|.+.....+. ...| .++
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence 5889998878776543 3345577999753 344222333344678888775222221 2233 244
Q ss_pred CCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--C-cEEEEEECCCC
Q 017371 265 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G-TIIRNLVDPTG 340 (372)
Q Consensus 265 g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g-~~~~~~~~~~g 340 (372)
+.+.++++|. .|.||++.-. .+|.+|+.+ + ..-..+....|
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~g 252 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASADG 252 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBSS
T ss_pred CcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecccc
Confidence 5688999875 5789999876 367888643 2 21112211122
Q ss_pred -CeeccceeeEE---E--CCEEEEEeCCCCeEEEEeC
Q 017371 341 -QLMSFVTSGLQ---V--DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 341 -~~~~~~t~~~~---~--~g~L~igs~~~~~i~~~~~ 371 (372)
.....+..+.. . .|+|.+.+-..+...+++.
T Consensus 253 ~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 253 DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 22334444444 1 2678888877778887763
No 184
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.85 E-value=1.1 Score=43.39 Aligned_cols=107 Identities=20% Similarity=0.113 Sum_probs=60.8
Q ss_pred CeEEcCCCC-EEEEeCCC---cEEEEcCCC--cEEEeeecCCcccccccceEEccCCc-EEEE-eCCCCCCCcccccccc
Q 017371 122 GLTSTKEGH-LIICDNAN---GLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDIL 193 (372)
Q Consensus 122 gl~~d~dG~-l~v~~~~~---gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vt-d~~~~~~~~~~~~~~~ 193 (372)
..++.|||+ |.++.... .++.+|-++ ...+.. ..+.. . .=.+.|||+ |+|+ |.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~--~--~Ps~spdG~~ivf~Sdr~------------- 303 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGIN--T--SPSWSPDGSKIVFTSDRG------------- 303 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccc--c--CccCCCCCCEEEEEeCCC-------------
Confidence 556778885 33332222 377777333 333322 12211 0 124557884 5554 322
Q ss_pred cccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC--eEEEEEcc
Q 017371 194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLK 249 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~ 249 (372)
+.-.||++|.++++.+.+........--.++|||+++.+....++ .|..+++.
T Consensus 304 ---G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 304 ---GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred ---CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 344799999998887776655555545678999998888774333 35555553
No 185
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.82 E-value=1.6 Score=43.81 Aligned_cols=176 Identities=14% Similarity=0.165 Sum_probs=103.9
Q ss_pred EEEcCCCcEEEEecCCeEEEEe--CCceEEE--EecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEeeec
Q 017371 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNW--KFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLSYV 155 (372)
Q Consensus 84 i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~--~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~~~ 155 (372)
++++++|...++.-+..|..++ +++.... ......-+..+++++|+...++....++.++ . +.| ++.+....
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H 104 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH 104 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence 8999999666555556788888 6655311 1111122238889999876666555555544 4 566 44333221
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCC-EE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDED-YV 233 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~-~l 233 (372)
.+ ..-.+++++.|.+..+ +...+++..+|-+.+.......++..+. .+.|.|+-+ .+
T Consensus 105 e~----Pvi~ma~~~~g~LlAt-----------------ggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~l 163 (775)
T KOG0319|consen 105 EA----PVITMAFDPTGTLLAT-----------------GGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWL 163 (775)
T ss_pred CC----CeEEEEEcCCCceEEe-----------------ccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhh
Confidence 22 2346889999976554 3367788888887777777777766554 456777754 35
Q ss_pred EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
+++...+..+..|++..... -...... ...-..++.+.+|++--++.
T Consensus 164 L~sg~~D~~v~vwnl~~~~t-cl~~~~~-H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 164 LASGATDGTVRVWNLNDKRT-CLHTMIL-HKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred eeecCCCceEEEEEcccCch-HHHHHHh-hhhheeeeeeccCCceEEEe
Confidence 56666677888888764211 1111111 11224567777777544443
No 186
>PHA02713 hypothetical protein; Provisional
Probab=95.79 E-value=1.8 Score=43.52 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=57.8
Q ss_pred eEEEEe--CCceEEEEecCCCc-ccCeEEcCCCCEEEEeCC-------CcEEEEc-CCC-cEEEeeecCCcccccccceE
Q 017371 100 WIKRLQ--DGTWVNWKFIDSQT-LVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 167 (372)
Q Consensus 100 ~i~~~~--~g~~~~~~~~~~~p-~~gl~~d~dG~l~v~~~~-------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~ 167 (372)
.+.+++ .++|..+....... ..+.+. -+|.|||.... ..+.++| .++ ...++.. +..+ . ..-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R--~-~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNR--C-RFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchh--h-ceeE
Confidence 466777 55665543321111 113333 36789988542 1266777 444 4433221 1111 1 1222
Q ss_pred EccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEe
Q 017371 168 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCE 237 (372)
Q Consensus 168 ~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~ 237 (372)
..-+|+||+.-.. ........+.+|||.+++++.+.. +..+. +++. -+| .+|+..
T Consensus 348 ~~~~g~IYviGG~------------~~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviG 405 (557)
T PHA02713 348 AVIDDTIYAIGGQ------------NGTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIG 405 (557)
T ss_pred EEECCEEEEECCc------------CCCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEe
Confidence 3357899985210 001123468999999888876543 22221 2222 234 588865
No 187
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.68 E-value=0.54 Score=45.05 Aligned_cols=110 Identities=17% Similarity=0.264 Sum_probs=67.6
Q ss_pred ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc----CcceEEEecCCCEEEEE
Q 017371 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----FANGVALSRDEDYVVVC 236 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~----~~~gi~~~~dg~~l~v~ 236 (372)
+++.....-+||+-.+. +.....|-.+|..+-..++-+ .+. .-..++++||.+ +.++
T Consensus 466 nyiRSckL~pdgrtLiv-----------------GGeastlsiWDLAapTprika-eltssapaCyALa~spDak-vcFs 526 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIV-----------------GGEASTLSIWDLAAPTPRIKA-ELTSSAPACYALAISPDAK-VCFS 526 (705)
T ss_pred cceeeeEecCCCceEEe-----------------ccccceeeeeeccCCCcchhh-hcCCcchhhhhhhcCCccc-eeee
Confidence 45556666788854442 112345666776543333221 222 224688999998 5555
Q ss_pred eCCCCeEEEEEccCCCCcceeeeccCCCCCCce---eEEcCCC-CEEEEEecCchhHHHHhhc
Q 017371 237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILNS 295 (372)
Q Consensus 237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~---i~~d~~G-~lwva~~~~~~~~~~~~~~ 295 (372)
-...+.|..+++... .....+.|.+|| |.+..|| +||.+...+....||+-..
T Consensus 527 ccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred eccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 556667888888653 223345666776 7778899 7999987776667776443
No 188
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=3.1 Score=42.99 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=87.1
Q ss_pred CCCccEEEcCCCcEEEEe--cCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---c
Q 017371 79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V 148 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---~ 148 (372)
.+.-++++-|. +.|+-+ .+|.|..|| -| -+..|..-.|-.. |++|.+++-|+|+..+ ..+.+++ ++. .
T Consensus 10 sRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 10 SRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 45567777765 455443 788888887 23 2444544455566 9999999999998654 3455555 333 2
Q ss_pred EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEe
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALS 227 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~ 227 (372)
+.+.+ +-++..+.|.+. .=||-..| .+..|..+|-.+.+...++++...- ..-.|+
T Consensus 88 tL~GH------lDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 88 TLLGH------LDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred hhccc------cceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 22211 124445555443 23443222 3344555555555554555554332 234488
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCC
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
|.++ ++|+.+-+..|..+|+.|-
T Consensus 145 ptED-lIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 145 PTED-LIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred Cccc-eEEEecccceEEEEeecch
Confidence 8776 8999998999999998874
No 189
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=2.7 Score=41.85 Aligned_cols=180 Identities=12% Similarity=0.017 Sum_probs=96.8
Q ss_pred CCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEE-EecCCCcccCeEEcCCCC-EEEEeCCCcEEEE-c-CCCcEEEe
Q 017371 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGH-LIICDNANGLHKV-S-EDGVENFL 152 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~-~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~-~-~~g~~~l~ 152 (372)
..-|+|+..++|+|+-...+|.|..|| +++...- ...++-.+ .++..+.+. +-|+. ..|+..+ + ..+.-.+.
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igc-ddGvl~~~s~~p~~I~~~ 147 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGC-DDGVLYDFSIGPDKITYK 147 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeec-CCceEEEEecCCceEEEE
Confidence 457889999889999888999999999 6665443 33445556 888888775 44542 3453332 2 22311111
Q ss_pred eecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE----eCCccC-cc----
Q 017371 153 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYF-AN---- 222 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~----~~~~~~-~~---- 222 (372)
..+.-. -..+-.+.++++|. |.. +..+|.|..+|..+++.-.+ .+++.. -+
T Consensus 148 r~l~rq-~sRvLslsw~~~~~~i~~------------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 148 RSLMRQ-KSRVLSLSWNPTGTKIAG------------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred eecccc-cceEEEEEecCCccEEEe------------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 111111 12345788888886 444 33456677778765543331 122322 22
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371 223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~ 284 (372)
++.+-.|+ .+++....+.|..++.....+.+ .+. .+.+-.-.++++.+++ ++++...
T Consensus 209 Sv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq--S~~-~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 209 SVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ--SHS-CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEEeecC--cEEEecCCceEEEEcccCcchhh--hhh-hhhcceeEEEEcCCCCeEEEccCC
Confidence 34444565 33443344556655544322221 111 1222345677887764 5555544
No 190
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.89 Score=38.88 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=87.4
Q ss_pred ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--C-CccCcceEEEecCCCEEEEEe
Q 017371 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D-GFYFANGVALSRDEDYVVVCE 237 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~-~~~~~~gi~~~~dg~~l~v~~ 237 (372)
.+..++..+ +|+|+.+..- | +...|.++|..+|+...-. . .-.|..|+.- -|+++|...
T Consensus 46 sfTQGL~~~-~g~i~esTG~--y-------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~--~gd~~y~LT 107 (262)
T COG3823 46 SFTQGLEYL-DGHILESTGL--Y-------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK--LGDYFYQLT 107 (262)
T ss_pred hhhcceeee-CCEEEEeccc--c-------------ccceeEEEeccCceEEEEeecCCccccccceee--ccceEEEEE
Confidence 355677664 4588886531 1 3457888998877754421 1 2233445543 366788888
Q ss_pred CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371 238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 316 (372)
Q Consensus 238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~ 316 (372)
....--++|+.++-+ ....+. -+| +|-.+..|| ++|.++..
T Consensus 108 w~egvaf~~d~~t~~--~lg~~~--y~G--eGWgLt~d~~~LimsdGs-------------------------------- 149 (262)
T COG3823 108 WKEGVAFKYDADTLE--ELGRFS--YEG--EGWGLTSDDKNLIMSDGS-------------------------------- 149 (262)
T ss_pred eccceeEEEChHHhh--hhcccc--cCC--cceeeecCCcceEeeCCc--------------------------------
Confidence 777767778776421 111221 122 333343444 69988865
Q ss_pred CCceEEEEECCC-----CcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 317 GGGAHLIHVAED-----GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 317 ~~~~~v~~~~~~-----g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
..+...||+ +++.. ..+|..........-.+|.||-.-+..+.|.|++-
T Consensus 150 ---atL~frdP~tfa~~~~v~V---T~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 150 ---ATLQFRDPKTFAELDTVQV---TDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP 203 (262)
T ss_pred ---eEEEecCHHHhhhcceEEE---EECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence 345555654 22222 22355455555666678999998888999998874
No 191
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.47 E-value=1.7 Score=38.49 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=73.2
Q ss_pred CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-c-EEEeee
Q 017371 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-V-ENFLSY 154 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~-~~l~~~ 154 (372)
|--+.-|..-.+|+|+..+++..+| .|+...-...+.+.- +-+.- -|+ +.++-...+++.++ .+| . ..+..
T Consensus 15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~- 91 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI- 91 (354)
T ss_pred cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee-
Confidence 3334444455789999999999998 665432222222222 22222 233 33344445677777 666 2 21111
Q ss_pred cCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecCCCE
Q 017371 155 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDY 232 (372)
Q Consensus 155 ~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~dg~~ 232 (372)
.+..+ . .-..|.++ -||.+. .++..|.+|+.+..-..- ..+...-.+-++++-...
T Consensus 92 ~~~vk---~-~a~~d~~~glIycgs------------------hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 92 LETVK---V-RAQCDFDGGLIYCGS------------------HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS 149 (354)
T ss_pred hhhhc---c-ceEEcCCCceEEEec------------------CCCcEEEecccccceEEecccCCceeccceecCCCce
Confidence 11111 0 12355554 577642 456788888765432111 111111234456663345
Q ss_pred EEEEeCCCCeEEEEEccC
Q 017371 233 VVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~~g 250 (372)
||++.+. ++|.++..+.
T Consensus 150 ly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 150 LYAAITA-GAVLAVTKNP 166 (354)
T ss_pred EEEEecc-ceEEEEccCC
Confidence 9999875 4788887654
No 192
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.42 E-value=3.4 Score=43.23 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=80.5
Q ss_pred CCccEEEcCCC-cEEEEecCCeEEEEe-C-----------C---ceEEEE------ecCCCcccCeEEcCCCCEEEEeCC
Q 017371 80 HPEDASMDKNG-VIYTATRDGWIKRLQ-D-----------G---TWVNWK------FIDSQTLVGLTSTKEGHLIICDNA 137 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~-----------g---~~~~~~------~~~~~p~~gl~~d~dG~l~v~~~~ 137 (372)
--.++-+.+|| +|+.|+.|.-|..+. . | .++.|. .-.+... .+..+|++.+++.-..
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSL 149 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecc
Confidence 34567788888 667776665445454 2 1 122332 1224456 8899999988877543
Q ss_pred -CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371 138 -NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 213 (372)
Q Consensus 138 -~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~ 213 (372)
+.|..++ ... .+++. +- ...+.++.+||-|+.+.+.+ .+..|..++..+-..+.
T Consensus 150 DnsViiwn~~tF~~~~vl~----~H-~s~VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLR----GH-QSLVKGVSWDPIGKYFASQS-----------------DDRTLKVWRTSDWGIEK 207 (942)
T ss_pred cceEEEEccccceeeeeee----cc-cccccceEECCccCeeeeec-----------------CCceEEEEEcccceeeE
Confidence 5688887 333 33332 11 24677999999999766644 23445445433323333
Q ss_pred EeCC-cc------CcceEEEecCCCEEEEEeCCC
Q 017371 214 VADG-FY------FANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 214 ~~~~-~~------~~~gi~~~~dg~~l~v~~~~~ 240 (372)
..+. +. +-..+.|+|||.+|-..+..+
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 3322 11 123577999999888766544
No 193
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=1.3 Score=42.02 Aligned_cols=207 Identities=14% Similarity=0.083 Sum_probs=104.4
Q ss_pred CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371 118 QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 118 ~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~ 193 (372)
.|...|+.+++|.+.++..- ..++.+. .+| +.++..-. ..+.-|.+..||..+||-+
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY-----Q~ITcL~fs~dgs~iiTgs-------------- 142 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY-----QSITCLKFSDDGSHIITGS-------------- 142 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc-----cceeEEEEeCCCcEEEecC--------------
Confidence 33438888999988777633 4488888 777 33331111 1344567778888888633
Q ss_pred cccCCCeEEEEeCC-------CCeEEEE--eCCcc-CcceEEEecC--CCEEEEEeCCCCeEEEEEccCCCCcceeeecc
Q 017371 194 EGKPHGQLLKYDPS-------SNITTLV--ADGFY-FANGVALSRD--EDYVVVCESWKFRCRKYWLKGERKGKLETFAE 261 (372)
Q Consensus 194 ~~~~~g~v~~~d~~-------t~~~~~~--~~~~~-~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~ 261 (372)
.+|.|+.++.- +..+..+ ..... .-..+.++.. ..++| +.+.+..+..|++....+-.. +
T Consensus 143 ---kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLlt--i-- 214 (476)
T KOG0646|consen 143 ---KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVLLLT--I-- 214 (476)
T ss_pred ---CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEeccceeeEE--E--
Confidence 45566555321 1111110 00000 0011222222 12243 334455666677765422111 1
Q ss_pred CCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371 262 NLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 340 (372)
Q Consensus 262 ~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g 340 (372)
..|.-+..+++|+.+ .+|+++.........+ ..+|.. ..+-....++.+++.+..+....+
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~-----------~~~~~~-------~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLL-----------FKLSGQ-------SAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeeeh-----------hcCCcc-------cccccccccccccceeeeeccccC
Confidence 133346778888877 5777765421111111 011100 000012334456666666654333
Q ss_pred CeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371 341 QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 341 ~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~ 371 (372)
. +.+|+.... ||.|.+..-....+.++++
T Consensus 277 ~--~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 277 E--SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred C--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 1 368888885 8888888878888888774
No 194
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.37 Score=43.58 Aligned_cols=107 Identities=16% Similarity=0.281 Sum_probs=60.8
Q ss_pred CeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371 122 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
.+.|.+|+.-.......-..++. ++| ...+ .|- ..++|...+.+||+-.++-+ .
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf----rGH-sSyvn~a~ft~dG~~iisaS-----------------s 368 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF----RGH-SSYVNEATFTDDGHHIISAS-----------------S 368 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHh----cCc-cccccceEEcCCCCeEEEec-----------------C
Confidence 67788887544433333456665 455 2222 221 25788899999998777654 4
Q ss_pred CCeEEEEeCCCCeEEEEeCC---ccCcceEEEecC-CCEEEEEeCCCCeEEEEEccCC
Q 017371 198 HGQLLKYDPSSNITTLVADG---FYFANGVALSRD-EDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~---~~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~ 251 (372)
+|.|-.++.++.+....... -..-|.+-+-|. -.+++|++. .+.|+..++.|.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ 425 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ 425 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence 66777777665432211111 111234444443 446777775 457888887764
No 195
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.31 E-value=2.3 Score=39.05 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=80.5
Q ss_pred EEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEe---cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeeecC
Q 017371 84 ASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVN 156 (372)
Q Consensus 84 i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~---~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~~~ 156 (372)
|.++. ...|+....|.|++-. .| .++.+.. ..+.+. ++....++..+++.....+++-...| .+.+.....
T Consensus 67 I~f~~-~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 67 ISFDG-NEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp EEEET-TEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred EEecC-CceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence 44443 3566666667677766 33 4666532 235566 66665667777765544466665545 554443322
Q ss_pred CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEE-EeCCCCeEEEEeCC-ccCcceEEEecCCCEEE
Q 017371 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK-YDPSSNITTLVADG-FYFANGVALSRDEDYVV 234 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~ 234 (372)
...+++...+||++.... ..|.+|. .|+.....+..... ...-..+.+++|++ ||
T Consensus 145 ----gs~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw 201 (302)
T PF14870_consen 145 ----GSINDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW 201 (302)
T ss_dssp ------EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred ----ceeEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence 345667777888754322 3455553 45532234433322 23345678899976 88
Q ss_pred EEeCCCCeEEEEEccCCCCcceeeecc----C-CCCC-CceeEEcCCCCEEEEEec
Q 017371 235 VCESWKFRCRKYWLKGERKGKLETFAE----N-LPGA-PDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 235 v~~~~~~~i~~~~~~g~~~~~~~~~~~----~-~~g~-p~~i~~d~~G~lwva~~~ 284 (372)
+... +..|+.=+.. ...+.+.. . ..++ .-.++..+++.+|++...
T Consensus 202 ~~~~-Gg~~~~s~~~----~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 202 MLAR-GGQIQFSDDP----DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEET-TTEEEEEE-T----TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EEeC-CcEEEEccCC----CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 7764 4445544411 11222221 1 1111 234678899999998876
No 196
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.55 Score=47.37 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=92.3
Q ss_pred CccEEEcC-CC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEE-E-
Q 017371 81 PEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN-F- 151 (372)
Q Consensus 81 p~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~-l- 151 (372)
..||++.| |. ++.-|+-||+|..|. +.++..|...-.... .+++.|||...|.....|..++- ..| +.. .
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 55688887 33 333455799888888 777888876655556 99999999877776677876665 444 111 1
Q ss_pred eeecCC--cccccccceEEccCC--cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eE
Q 017371 152 LSYVNG--SKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GV 224 (372)
Q Consensus 152 ~~~~~~--~~~~~~~~l~~d~dG--~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi 224 (372)
.....+ ...+.+.++-+.+.. ++.||. .+.+|..||..+.++.....++...+ .-
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcceee
Confidence 111011 111234555555322 577763 34578888875455444445544433 34
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 225 ALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 225 ~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.|+.||++++.+. .+..||.+..+.
T Consensus 553 sfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 553 SFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred eEccCCCEEEEee-cCceEEEEeCCC
Confidence 5888999776654 677888887654
No 197
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.24 E-value=0.53 Score=44.08 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=76.7
Q ss_pred CeEEcCCCCEEEEeCCCcE-EEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371 122 GLTSTKEGHLIICDNANGL-HKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv-~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
++++.+||.|..+.....+ ..+| .+| +..+. | -...+.+++++|+|....|-++ ..
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----g-H~k~I~~V~fsPNGy~lATgs~---------------Dn 367 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA----G-HIKEILSVAFSPNGYHLATGSS---------------DN 367 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec----c-cccceeeEeECCCceEEeecCC---------------CC
Confidence 8999999998776543333 3355 677 33332 2 2346779999999987776332 12
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 277 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~ 277 (372)
.-+||.+... ..+-.+...-..-..|.++|+.+.++++.+.++.+..+...+- ....... ...+-.-.+.+.+||.
T Consensus 368 t~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 368 TCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQ 443 (459)
T ss_pred cEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCc
Confidence 3345544432 2222232223334578999977777777766654444332221 1111222 1222344566777887
Q ss_pred EEEEEec
Q 017371 278 FWIAIIK 284 (372)
Q Consensus 278 lwva~~~ 284 (372)
..++..-
T Consensus 444 ~i~t~s~ 450 (459)
T KOG0272|consen 444 AIATSSF 450 (459)
T ss_pred eEEEecc
Confidence 6665543
No 198
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.16 E-value=1.1 Score=41.91 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=74.9
Q ss_pred cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCCc-ccccccceEEcc
Q 017371 97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGS-KLRFANDVVEAS 170 (372)
Q Consensus 97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~-~~~~~~~l~~d~ 170 (372)
.++.|..|| ......-.+.++... ++....+|. |..+.-+.-+-.+| ..- +...... ++. -..-.+.+.|.|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECC
Confidence 566666666 333333334455555 777777774 55554344466666 332 3332221 221 112456788888
Q ss_pred CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCEEEEEeC
Q 017371 171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCES 238 (372)
Q Consensus 171 dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~ 238 (372)
+|....+ +..+|.||.++..+++.+.+...-..+ ..++|++-|.++.-++.
T Consensus 398 d~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 398 DGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 8874443 447899999999999999877654444 45678888887776654
No 199
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.13 E-value=2.7 Score=38.83 Aligned_cols=225 Identities=12% Similarity=0.040 Sum_probs=110.8
Q ss_pred ccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC-cEEEeeec
Q 017371 82 EDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYV 155 (372)
Q Consensus 82 ~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g-~~~l~~~~ 155 (372)
+-+..-|.+. |..|+.+|.++.|. ++....+....+.+...=.+-|||...++.... -|..++ .+| ...-....
T Consensus 152 eWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~ 231 (399)
T KOG0296|consen 152 EWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA 231 (399)
T ss_pred EEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc
Confidence 3344445554 44556788888887 333333333223332122455788654443333 467777 677 22222221
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC---------ccCcce---
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---------FYFANG--- 223 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~---------~~~~~g--- 223 (372)
++ .....+.+..+|...++ +...+.++.++..+|++.....+ -...+.
T Consensus 232 e~---~~~~~~~~~~~~~~~~~-----------------g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 232 EG---LELPCISLNLAGSTLTK-----------------GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred cc---CcCCccccccccceeEe-----------------ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 21 12223444444544442 11233344444444444333221 000111
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 017371 224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 303 (372)
Q Consensus 224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~ 303 (372)
+.++.+=. |..+..-.++|..|++... ..+....+..+ .-.+...+...|+.++..
T Consensus 292 ~~~ss~lp-L~A~G~vdG~i~iyD~a~~---~~R~~c~he~~-V~~l~w~~t~~l~t~c~~------------------- 347 (399)
T KOG0296|consen 292 IPSSSKLP-LAACGSVDGTIAIYDLAAS---TLRHICEHEDG-VTKLKWLNTDYLLTACAN------------------- 347 (399)
T ss_pred cccccccc-hhhcccccceEEEEecccc---hhheeccCCCc-eEEEEEcCcchheeeccC-------------------
Confidence 22232322 5555666678888887532 22222222222 233455666667777765
Q ss_pred HhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371 304 AAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 304 ~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~ 370 (372)
|.|..+| ..|+.+..|....- .+..+... ++++-+.....+..-+++
T Consensus 348 ----------------g~v~~wDaRtG~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 348 ----------------GKVRQWDARTGQLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ----------------ceEEeeeccccceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 6788888 45999988875432 24445544 566666666655555544
No 200
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.09 E-value=1.4 Score=43.48 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=77.3
Q ss_pred cEEEEec-----CCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEeeecCCcccccc
Q 017371 91 VIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFA 163 (372)
Q Consensus 91 ~l~v~~~-----~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~~~~~~~~~~~~ 163 (372)
.||+.+. .+..+.+| +|.++............+...++|+|++... ..+..+|..| +... ...++....+-
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~-~~l~~~~~~~H 192 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWE-YDLPGGYYDFH 192 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEE-EE--TTEE-B-
T ss_pred cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEe-eecCCcccccc
Confidence 4666553 56678888 8888755443222220266778999998865 6799999777 3222 23333222345
Q ss_pred cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC---C-----------------------
Q 017371 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---G----------------------- 217 (372)
Q Consensus 164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~---~----------------------- 217 (372)
+++...++|++.+.....++... ......-...|+.+| .+|++....+ .
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~----~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDE----DKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-T----S-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred cccEECCCCCEEEEEeecccccC----CCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 68899999987775431111000 000111234578888 5676655321 0
Q ss_pred --ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 218 --FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 218 --~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
....|++.+++..+.++++....+.|++++..+
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 112478899996677999998888999998543
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.06 E-value=1.2 Score=41.08 Aligned_cols=134 Identities=15% Similarity=0.134 Sum_probs=83.9
Q ss_pred eEEEEeCCCCeEEEEeCC-ccCcceEE-EecCC--CEEEEE-eCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 200 QLLKYDPSSNITTLVADG-FYFANGVA-LSRDE--DYVVVC-ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 200 ~v~~~d~~t~~~~~~~~~-~~~~~gi~-~~~dg--~~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
.||.||.++-+.-...+. -..|.|++ +++.. .++-+- .+..+.|+.|+...- .....+ +...+-...+++++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I-~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTI-NAHKGPLAALAFSP 183 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEE-EecCCceeEEEECC
Confidence 489999864332221222 25666654 66544 344443 334567888887643 222222 23344466799999
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CCCcEEEEEECCCCCeeccceeeEEE
Q 017371 275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNLVDPTGQLMSFVTSGLQV 352 (372)
Q Consensus 275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~g~~~~~~~~~~g~~~~~~t~~~~~ 352 (372)
+|++..+... .|.|+|+- ++|+.+..|.. |.....+.++.++
T Consensus 184 ~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 184 DGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS 227 (391)
T ss_pred CCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence 9988776655 45666653 67888777754 5445567788887
Q ss_pred -CCEEEEEeCCCCeEEEEeCC
Q 017371 353 -DNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 353 -~g~L~igs~~~~~i~~~~~~ 372 (372)
+..+..++.....|-+++|+
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCeEEEecCCCeEEEEEec
Confidence 56777778888999999875
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.63 Score=43.42 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=87.7
Q ss_pred cEEEcCCCc-EEEEecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeec
Q 017371 83 DASMDKNGV-IYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV 155 (372)
Q Consensus 83 ~i~~d~~G~-l~v~~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~ 155 (372)
.+++..+|. |-++..||.+..++ +- .........+... .|.|.+||.+.+.-.......++ .+| +..... .
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~-~ 226 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTP-F 226 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCC-c
Confidence 455555543 33333555444444 11 1111112234556 89999999877775555667777 666 332211 1
Q ss_pred CC-cccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CC----eEEEEeCCccCcceEEEe
Q 017371 156 NG-SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN----ITTLVADGFYFANGVALS 227 (372)
Q Consensus 156 ~~-~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~----~~~~~~~~~~~~~gi~~~ 227 (372)
.. ..+...+- -.|++ ..+++.+.. .+.++|..++.. .+ +..........-..++++
T Consensus 227 ~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 227 SKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred ccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 11 11222211 22222 266665432 134445444432 12 222223334455678999
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva 281 (372)
.||+++-+. +..+.|..|.... ......+.....++..++.+-||-+.-..
T Consensus 291 ~dGkf~AlG-T~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 291 DDGKFLALG-TMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred CCCcEEEEe-ccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 999955554 4566788887542 22222222223345667777777665554
No 203
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=2 Score=38.60 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred EEecCCCEEEEEeCC----CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 017371 225 ALSRDEDYVVVCESW----KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 300 (372)
Q Consensus 225 ~~~~dg~~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r 300 (372)
+|++||.+||.++.. .+-|-.|+.. +.......|....- .|..+.+-+||+..+...+. +...|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~Gi-GpHev~lm~DGrtlvvanGG-------Iethpdfg 190 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGI-GPHEVTLMADGRTLVVANGG-------IETHPDFG 190 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCc-CcceeEEecCCcEEEEeCCc-------eecccccC
Confidence 589999999998752 2345566654 23333333332222 38999999999766655441 11111100
Q ss_pred H--HHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeC
Q 017371 301 H--VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL 361 (372)
Q Consensus 301 ~--~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~ 361 (372)
+ +.. +.++| .+.-++ .+|++++....|.......+--+..+ +|++|+|.-
T Consensus 191 R~~lNl---dsMeP--------Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 191 RTELNL---DSMEP--------SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ccccch---hhcCc--------cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 0 000 01111 344455 67888776555533222234444443 689998864
No 204
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=1.2 Score=40.36 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=47.2
Q ss_pred ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCCCC
Q 017371 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWKF 241 (372)
Q Consensus 163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~ 241 (372)
.+.+.|.+.|.+... +-.+|+|..||..|-.+..+......| ..++|++||+.| ++.+.+.
T Consensus 26 a~~~~Fs~~G~~lAv-----------------Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAV-----------------GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKL-LTSSRDW 87 (405)
T ss_pred cceEEeccCcceeee-----------------eccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEe-eeecCCc
Confidence 445667777765442 446899999998876554444443334 578999999854 5555667
Q ss_pred eEEEEEccC
Q 017371 242 RCRKYWLKG 250 (372)
Q Consensus 242 ~i~~~~~~g 250 (372)
.|..+++..
T Consensus 88 si~lwDl~~ 96 (405)
T KOG1273|consen 88 SIKLWDLLK 96 (405)
T ss_pred eeEEEeccC
Confidence 788888753
No 205
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.95 E-value=2.3 Score=38.31 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=81.9
Q ss_pred ccEEEcCCCcEEEEe-cCCeEEEEe-CCceEEEEe--c-CCCcccCeEEcCCCCEEE-EeCCCcEEEEc-CCC--cEEEe
Q 017371 82 EDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKF--I-DSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFL 152 (372)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~~~~--~-~~~p~~gl~~d~dG~l~v-~~~~~gv~~~~-~~g--~~~l~ 152 (372)
-.+.++|+|..+++. .|..|+-|+ .|.-+.+.. . .+-.. ++.+.+|++..+ +..++.++.+| +.| ...+.
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 347788999887766 788899888 554443321 1 22344 888889997544 45567899999 777 33221
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~ 232 (372)
. . ..+.|.+....-|-..++..+ .++.+-.+|..+++.......-..-..+.|..++..
T Consensus 130 ~--h---~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 130 G--H---TSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred c--c---cceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 1 1 135666665556655554332 556677777654433222222222335666655554
Q ss_pred EEEEeCCCCeEEEEEc
Q 017371 233 VVVCESWKFRCRKYWL 248 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~ 248 (372)
++... -++.|..+++
T Consensus 189 v~sgg-Idn~ikvWd~ 203 (338)
T KOG0265|consen 189 VISGG-IDNDIKVWDL 203 (338)
T ss_pred eeecc-ccCceeeecc
Confidence 44333 3445666665
No 206
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.92 E-value=2.5 Score=39.80 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCC----CCeEEEEEcc-CCCCcceeeeccCCCCCCc-e
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-N 269 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~----~~~i~~~~~~-g~~~~~~~~~~~~~~g~p~-~ 269 (372)
+...|+.++.+++..+.+-.+-..- .-+.++++++.+|+..+. ...|+++.++ + +..+.+... . ... .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~-~-~~~~~ 332 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCE-D-GDHYS 332 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTT-S-STTEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCC-C-CCceE
Confidence 5678999999877766554443333 246689999999998775 3579999987 4 333444322 2 234 7
Q ss_pred eEEcCCCCEEEEEec
Q 017371 270 INLAPDGTFWIAIIK 284 (372)
Q Consensus 270 i~~d~~G~lwva~~~ 284 (372)
+.++++|++++-...
T Consensus 333 ~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEE-TTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEc
Confidence 899999999887765
No 207
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.90 E-value=4.4 Score=41.07 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCCCccEEEcCCCcEEEEecCCeEEEEe-C-Cc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEE
Q 017371 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-D-GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VEN 150 (372)
Q Consensus 78 ~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~-g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~ 150 (372)
-...+++++..+..+..+..++.|..|+ + .+ ++++ +++..+ +-.|-|.++..|.....| +..++ .+. ++.
T Consensus 373 R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred hhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence 3567788888765444444677777777 3 32 3333 344555 666666555444444444 66666 443 333
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC-----CCCeEEEEe-----CCccC
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-----SSNITTLVA-----DGFYF 220 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~-----~t~~~~~~~-----~~~~~ 220 (372)
+.. .. ..+..|+..||++=+++-+ .+..|-.+|. ..|..+.+. ..+..
T Consensus 450 i~A-Hd----gaIWsi~~~pD~~g~vT~s-----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 450 IRA-HD----GAIWSISLSPDNKGFVTGS-----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred hhc-cc----cceeeeeecCCCCceEEec-----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 321 11 2345677777777666533 2222222221 001111100 11222
Q ss_pred c---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch
Q 017371 221 A---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA 287 (372)
Q Consensus 221 ~---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~ 287 (372)
+ -.+.++|||++|-|+- -++.|..|.+++-+.. ...+...+| .-.|-+.+|+++.|++...++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtlKFf-lsLYGHkLP--V~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKFF-LSLYGHKLP--VLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred cccEEEEEEcCCCcEEEEEe-ccCeEEEEEecceeee-eeecccccc--eeEEeccCCcCeEEeccCCCc
Confidence 2 2567999999766665 5678999998764211 122222333 346777888999998877654
No 208
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.68 E-value=0.82 Score=42.69 Aligned_cols=172 Identities=14% Similarity=0.198 Sum_probs=94.8
Q ss_pred EEEcCCC-cEEEEecCCeEEEEeC-C-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCC
Q 017371 84 ASMDKNG-VIYTATRDGWIKRLQD-G-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNG 157 (372)
Q Consensus 84 i~~d~~G-~l~v~~~~g~i~~~~~-g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~ 157 (372)
+...++| +|.+|+..|....|+. . .++.+...-..|..++.+..+|...|+....|.+++- ++- +..+ ..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~----~a 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII----QA 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh----hH
Confidence 5556776 6777877775555541 1 1222222223444478888888877765556666655 321 2211 11
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEE
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~ 236 (372)
.....+.++++.++...++|-+ .+|+|...|..-.+-+.+..+ ...+..+.|+|... |+++
T Consensus 178 hh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias 239 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS 239 (464)
T ss_pred hhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence 1113577899999888777643 567777777654444444333 34566789999876 7777
Q ss_pred eCCCCeEEEEE-ccCCCCcce-eeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 237 ESWKFRCRKYW-LKGERKGKL-ETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 237 ~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
..-++ +.++| .. .++. .... ......-++.+.++||+..+.
T Consensus 240 gskDn-lVKlWDpr---Sg~cl~tlh-~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 240 GSKDN-LVKLWDPR---SGSCLATLH-GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred ccCCc-eeEeecCC---Ccchhhhhh-hccceEEEEEEcCCCCeeEEc
Confidence 66555 55554 32 2221 0000 011113456677777655554
No 209
>PHA02713 hypothetical protein; Provisional
Probab=94.68 E-value=2.2 Score=43.01 Aligned_cols=155 Identities=11% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCcEEEEec-C------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCC------cEEEEc-CCC-cEE
Q 017371 89 NGVIYTATR-D------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-VEN 150 (372)
Q Consensus 89 ~G~l~v~~~-~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~------gv~~~~-~~g-~~~ 150 (372)
+|.||+... + ..+++++ .+.|.....-. .+...+++. -+|.||+..... .+.++| .++ ...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 567887642 1 2467787 55555443211 111113333 368999875432 256677 334 443
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCC---Ccccccc--cc-cccCCCeEEEEeCCCCeEEEEeCCc--cCcc
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL---PHEYCLD--IL-EGKPHGQLLKYDPSSNITTLVADGF--YFAN 222 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~---~~~~~~~--~~-~~~~~g~v~~~d~~t~~~~~~~~~~--~~~~ 222 (372)
++.. +... .-.+++ .-+|+||+.-...... ....... .. .......+.+|||.+.+++.+..-. ....
T Consensus 382 ~~~m-p~~r--~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 382 LPDM-PIAL--SSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred CCCC-Cccc--ccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 3221 1111 111222 3479999953210000 0000000 00 0011356999999999887765321 1122
Q ss_pred eEEEecCCCEEEEEeCCC------CeEEEEEccC
Q 017371 223 GVALSRDEDYVVVCESWK------FRCRKYWLKG 250 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~------~~i~~~~~~g 250 (372)
+++.. ++ .+|+....+ ..+.+|++..
T Consensus 458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 34332 34 588875321 2477898764
No 210
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.60 E-value=3.2 Score=37.82 Aligned_cols=144 Identities=9% Similarity=0.021 Sum_probs=76.8
Q ss_pred cCCCcEEEEe-cCCeEEEEe--CCceEEE----Ee--cCCCcccCeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEee
Q 017371 87 DKNGVIYTAT-RDGWIKRLQ--DGTWVNW----KF--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS 153 (372)
Q Consensus 87 d~~G~l~v~~-~~g~i~~~~--~g~~~~~----~~--~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~ 153 (372)
+|+-.+|..+ .+.-|..|| +|+.+.- .. ..-... .|.|.+||.-.++...+-|..++ +.| -.+...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhh
Confidence 3555677666 455677787 7765421 11 111235 88999999866666566688887 445 232222
Q ss_pred ec---CCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEec
Q 017371 154 YV---NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR 228 (372)
Q Consensus 154 ~~---~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~ 228 (372)
-. .+. ...+..+++.|-. +.+..-+ |+ ..-+||.-|. +..-.+.-+ -..-.-+.+.+
T Consensus 199 ~~~~k~gq-~giisc~a~sP~~~~~~a~gs---Y~------------q~~giy~~~~--~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 199 VTKGKFGQ-KGIISCFAFSPMDSKTLAVGS---YG------------QRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred hhcccccc-cceeeeeeccCCCCcceeeec---cc------------ceeeeEecCC--CCceeeecccCCCeeeEEecc
Confidence 11 111 1233445565532 2222111 00 1123444332 222222211 11223467999
Q ss_pred CCCEEEEEeCCCCeEEEEEcc
Q 017371 229 DEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 229 dg~~l~v~~~~~~~i~~~~~~ 249 (372)
||+.||....-...|..+++.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CcCeecccccCCCeEEEEeeh
Confidence 999999988888899999985
No 211
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.57 E-value=1.4 Score=41.14 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=85.3
Q ss_pred cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371 97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (372)
Q Consensus 97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d 171 (372)
.+..|..|+ +|+.-.-..-....+ ++.+..||.++++... +.|..+| ..| +..-.....|. .+....+-.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~ 227 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLAS 227 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEecc
Confidence 455566666 443221112223446 8889999999888655 5688888 556 22211222232 2333445567
Q ss_pred CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE---EecCCCEEEEEeCCCCeEEEEEc
Q 017371 172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWKFRCRKYWL 248 (372)
Q Consensus 172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~~~~i~~~~~ 248 (372)
|.|+.| ..++. ..-.+-..|++.-+.-.....+...||+. +++|.+.+|++.-++..|..|.+
T Consensus 228 g~i~tT-Gfsr~-------------seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 228 GKIFTT-GFSRM-------------SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred Cceeee-ccccc-------------cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 775443 22111 11223344544222222333455567765 58999999999998888887777
Q ss_pred cCCC--CcceeeeccCCCCCCceeEEcCCCCE
Q 017371 249 KGER--KGKLETFAENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 249 ~g~~--~~~~~~~~~~~~g~p~~i~~d~~G~l 278 (372)
.... ......|....| -.||.+-+.-.+
T Consensus 294 t~d~P~~hyln~f~S~ep--QRG~g~mPKRGl 323 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEP--QRGMGFMPKRGL 323 (472)
T ss_pred cCCCceeEEecccccCCc--cccccccccccc
Confidence 5442 233333433333 245555444333
No 212
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.56 E-value=3.1 Score=36.81 Aligned_cols=217 Identities=10% Similarity=0.101 Sum_probs=114.6
Q ss_pred CCCCCCccEEEcCCC-cEEEEecCCeEEEEe-CC-ce-EEEE-ec-CCCcccCeEEcCCC-CEEEE-eCCCcEEEEc-CC
Q 017371 76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ-DG-TW-VNWK-FI-DSQTLVGLTSTKEG-HLIIC-DNANGLHKVS-ED 146 (372)
Q Consensus 76 g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g-~~-~~~~-~~-~~~p~~gl~~d~dG-~l~v~-~~~~gv~~~~-~~ 146 (372)
+....-++++...+| .|-.+..++.+..++ ++ +. ..+. .. .+..- .++.++.. .++.+ ..++.+..+| ..
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence 445567888998888 565666777777776 32 21 1111 11 12233 67777544 44444 4446688888 66
Q ss_pred C--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceE
Q 017371 147 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 224 (372)
Q Consensus 147 g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi 224 (372)
+ ...+.. .+ ....+...|+|+-.+. +.....|-.+|..+-+...-.....+.|-+
T Consensus 97 ~k~~~~i~~--~~----eni~i~wsp~g~~~~~-----------------~~kdD~it~id~r~~~~~~~~~~~~e~ne~ 153 (313)
T KOG1407|consen 97 GKCTARIET--KG----ENINITWSPDGEYIAV-----------------GNKDDRITFIDARTYKIVNEEQFKFEVNEI 153 (313)
T ss_pred CcEEEEeec--cC----cceEEEEcCCCCEEEE-----------------ecCcccEEEEEecccceeehhcccceeeee
Confidence 6 222211 11 1234567777753321 124556777776544333222334556788
Q ss_pred EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec-CchhHHHHhhcchhHHHH-
Q 017371 225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK-LDARRMKILNSSKLIKHV- 302 (372)
Q Consensus 225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~-~~~~~~~~~~~~~~~r~~- 302 (372)
.+.-+++ +++..++.+.|...... .+.....+. ..+..--.|.+|++|+++....+ ...++||. -.+
T Consensus 154 ~w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~-------~ELi 222 (313)
T KOG1407|consen 154 SWNNSND-LFFLTNGLGCVEILSYP--SLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDV-------DELI 222 (313)
T ss_pred eecCCCC-EEEEecCCceEEEEecc--ccccccccc-cCCcceEEEEECCCCceEeeccccceeeccCh-------hHhh
Confidence 8886776 77777777777765432 222222221 12222233778999986655433 33344442 232
Q ss_pred HHh-cCccccccccCCCceEEEEECCCCcEEEE
Q 017371 303 LAA-YPKLFSQFITLGGGAHLIHVAEDGTIIRN 334 (372)
Q Consensus 303 ~~~-~p~~~~~~~~~~~~~~v~~~~~~g~~~~~ 334 (372)
+.+ +++.-+|+ +-+-|+-+|+.+.+
T Consensus 223 C~R~isRldwpV-------RTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 223 CERCISRLDWPV-------RTLSFSHDGRMLAS 248 (313)
T ss_pred hheeeccccCce-------EEEEeccCcceeec
Confidence 333 33333443 45556666766654
No 213
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.54 E-value=1.1 Score=42.98 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=73.7
Q ss_pred CeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCccccccccccc
Q 017371 122 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGK 196 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~ 196 (372)
.|++.+|-++.++.-..| |..+| .+. ++.+ .|-. .....|.+.+|| +||- +.
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf----qGht-DGascIdis~dGtklWT------------------GG 570 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF----QGHT-DGASCIDISKDGTKLWT------------------GG 570 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcccceeeecc----cCCC-CCceeEEecCCCceeec------------------CC
Confidence 677888888766644444 66677 544 4443 3321 134468888899 7886 33
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d 273 (372)
.++.|..+|..++.. +.. ..|. -.+...|.+.+|.|.- .++.++.....++..-+. .....-.-.+.+.
T Consensus 571 lDntvRcWDlregrq--lqq-hdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~kyql----hlheScVLSlKFa 642 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQ--LQQ-HDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEKYQL----HLHESCVLSLKFA 642 (705)
T ss_pred Cccceeehhhhhhhh--hhh-hhhhhhheecccCCCccceeeec-ccCcEEEEecCCccceee----cccccEEEEEEec
Confidence 567788888764432 111 1111 1234567777776654 344577666544311111 0111112346788
Q ss_pred CCCCEEEEEec
Q 017371 274 PDGTFWIAIIK 284 (372)
Q Consensus 274 ~~G~lwva~~~ 284 (372)
.-|..||++..
T Consensus 643 ~cGkwfvStGk 653 (705)
T KOG0639|consen 643 YCGKWFVSTGK 653 (705)
T ss_pred ccCceeeecCc
Confidence 89999998865
No 214
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.45 E-value=4.8 Score=38.50 Aligned_cols=97 Identities=7% Similarity=0.116 Sum_probs=57.5
Q ss_pred EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371 233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 312 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~ 312 (372)
...+...+..|..++...+ .....|..+. .-...+++.++|.+..+..-
T Consensus 424 ~l~sas~dstV~lwdv~~g--v~i~~f~kH~-~pVysvafS~~g~ylAsGs~---------------------------- 472 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESG--VPIHTLMKHQ-EPVYSVAFSPNGRYLASGSL---------------------------- 472 (524)
T ss_pred eEEEeecCCeEEEEEccCC--ceeEeeccCC-CceEEEEecCCCcEEEecCC----------------------------
Confidence 3333444556777776532 1223343221 11456888999976554433
Q ss_pred cccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371 313 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 313 ~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~ 371 (372)
.++|.--+ +.|++.+.+.+..+ +..+.-. +|....+......+.+++|
T Consensus 473 ------dg~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 ------DGCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------CCeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 34555445 56888888887554 4455553 5777778888888888875
No 215
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.39 E-value=6.4 Score=39.74 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=48.7
Q ss_pred EEEcCCCcEEE-EecCCeEEEEe-CCceEEEEe-cCCCcccCeEEcCCCCE---EEEeCCCcEEEEc-CCCcEEEeeecC
Q 017371 84 ASMDKNGVIYT-ATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHL---IICDNANGLHKVS-EDGVENFLSYVN 156 (372)
Q Consensus 84 i~~d~~G~l~v-~~~~g~i~~~~-~g~~~~~~~-~~~~p~~gl~~d~dG~l---~v~~~~~gv~~~~-~~g~~~l~~~~~ 156 (372)
+++++.|.+.. |..+|.+..|| .+...+... ..+.+...+.|.++-+. +.+..+..+..++ .++-. ......
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~ 189 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMI 189 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHH
Confidence 78888775543 44799999999 554333322 22444437788876543 3333333455666 33311 000000
Q ss_pred CcccccccceEEccCCcEEEE
Q 017371 157 GSKLRFANDVVEASDGSLYFT 177 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vt 177 (372)
. ......++++.+|+.-.++
T Consensus 190 ~-H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 190 L-HKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred h-hhhheeeeeeccCCceEEE
Confidence 0 1124457788777765554
No 216
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.25 E-value=1.6 Score=39.41 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371 216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 294 (372)
Q Consensus 216 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~ 294 (372)
+....-|-+.|+|... ++++.+.++.|.-|+..-....+ .+.|.+..+ ...|.+-+.|.+.+....
T Consensus 170 DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTd---------- 236 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTD---------- 236 (430)
T ss_pred hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecC----------
Confidence 3444567899999876 88888888889989875432221 233433332 467888999965544333
Q ss_pred cchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371 295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 370 (372)
Q Consensus 295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~ 370 (372)
+..+--||-+.-....-..|+.+....+++|... .++||+.......|-.+|
T Consensus 237 ------------------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 237 ------------------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ------------------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 2344555544433333344666666678888887 489999988877776554
No 217
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.20 E-value=6.3 Score=38.93 Aligned_cols=203 Identities=15% Similarity=0.124 Sum_probs=103.2
Q ss_pred CceEecCCCCCCCccEEEcCCCcEEEEe--cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCC---EEEEeCCCcE
Q 017371 69 DFIKVGEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGH---LIICDNANGL 140 (372)
Q Consensus 69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~---l~v~~~~~gv 140 (372)
....+..|.-....+|.+|+.| .|+++ .+|.|..|. +|. ++++.. .+... .+++.|.++ |.|+... .+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~-~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIR-SVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEee-cceeE-EEEecCCCCceeEEEEecC-ce
Confidence 4445555655568899999976 44444 677555555 553 333322 23344 666666554 2222222 24
Q ss_pred EEEc-CCC--cEE------Eeee-cC-----------------C--------cccccccceEEccCCcEEEEeCCCCCCC
Q 017371 141 HKVS-EDG--VEN------FLSY-VN-----------------G--------SKLRFANDVVEASDGSLYFTVSSSKYLP 185 (372)
Q Consensus 141 ~~~~-~~g--~~~------l~~~-~~-----------------~--------~~~~~~~~l~~d~dG~i~vtd~~~~~~~ 185 (372)
+.++ .=| ++. +... .+ . .....++.|....+|..+.+.
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV------- 539 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV------- 539 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe-------
Confidence 4444 111 111 1100 00 0 011234455555555533332
Q ss_pred cccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCC
Q 017371 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 264 (372)
Q Consensus 186 ~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 264 (372)
.....+-+|+.++.+......-+ .--..+..+.|+|..-+++|+... .|..|++....+. .... ...
T Consensus 540 -------~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelv--KkL~-tg~ 607 (733)
T KOG0650|consen 540 -------MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELV--KKLL-TGS 607 (733)
T ss_pred -------ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHH--HHHh-cCC
Confidence 22334556777776532222111 112235678899998889998654 4777776422111 1111 111
Q ss_pred CCCceeEEcCCC-CEEEEEecCchhHHHHhh
Q 017371 265 GAPDNINLAPDG-TFWIAIIKLDARRMKILN 294 (372)
Q Consensus 265 g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~ 294 (372)
-..+.|++++.| ||.+++...+.-++|+-.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 246788888888 788888777666666533
No 218
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.07 E-value=0.22 Score=30.91 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=30.0
Q ss_pred EEEEEeCCCC-eEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 232 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 232 ~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
.+||++.... .|.+-+++|.. .+.+....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999999853 3333333344699999984
No 219
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.03 E-value=6 Score=38.03 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=47.3
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCc--ceEEEecCCCEEEEEeCCC----------CeEEEEEccCCCCcceeeeccCCC
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK----------FRCRKYWLKGERKGKLETFAENLP 264 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~~~----------~~i~~~~~~g~~~~~~~~~~~~~~ 264 (372)
....|+.+|.++|+... +.+..+ .+++|.+|++.+|.+.... .+|+++.+.+.......+|-....
T Consensus 148 e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~ 225 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE 225 (414)
T ss_dssp SEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC
T ss_pred ceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC
Confidence 33568889998886533 232222 2389999998888776433 347777775443222344433222
Q ss_pred CC-CceeEEcCCCCEEEEE
Q 017371 265 GA-PDNINLAPDGTFWIAI 282 (372)
Q Consensus 265 g~-p~~i~~d~~G~lwva~ 282 (372)
.+ --++..++||++.+-.
T Consensus 226 ~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 226 PFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp TTSEEEEEE-TTSSEEEEE
T ss_pred CcEEEEEEecCcccEEEEE
Confidence 22 3367778888754433
No 220
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.94 E-value=1.1 Score=46.33 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCCCCccEEEc-CCCcEEEEe--cCCeEEEEe--CCc-eEEEEecCCCcccCeEEc------CCCCEEEEeCCCcEEEE
Q 017371 76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST------KEGHLIICDNANGLHKV 143 (372)
Q Consensus 76 g~~~~p~~i~~d-~~G~l~v~~--~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d------~dG~l~v~~~~~gv~~~ 143 (372)
|....|..+... .+-.+.+-+ ....|+++| .|+ ++.|......|...++-+ .....+++-..++++++
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence 444567665554 344676666 356799999 565 566765433322133322 12356787777899999
Q ss_pred c-C-CCcEEEeee-cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371 144 S-E-DGVENFLSY-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220 (372)
Q Consensus 144 ~-~-~g~~~l~~~-~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~ 220 (372)
| + .|...+... ..-........++.+.+|+|-|+. ..|.|..||.-+...+....++..
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs------------------~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGS------------------NKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCceEEEEe------------------CCCcEEeecccchhhhhcCCCCCC
Confidence 9 3 341111111 011111223467888999998864 467777787544444445556666
Q ss_pred c-ceEEEecCCCEEEEEeCCCCeEEEEE
Q 017371 221 A-NGVALSRDEDYVVVCESWKFRCRKYW 247 (372)
Q Consensus 221 ~-~gi~~~~dg~~l~v~~~~~~~i~~~~ 247 (372)
| .||.++.||++++.+-. . -|..++
T Consensus 620 pI~~iDvt~DGkwilaTc~-t-yLlLi~ 645 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATCK-T-YLLLID 645 (794)
T ss_pred CeeEEEecCCCcEEEEeec-c-eEEEEE
Confidence 6 48999999997766543 3 354444
No 221
>KOG4328 consensus WD40 protein [Function unknown]
Probab=93.87 E-value=6.2 Score=37.63 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=48.8
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEEcc--CCCCcceeeec-cCCCC---CCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371 221 ANGVALSRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFA-ENLPG---APDNINLAPDGTFWIAIIKLDARRMKILN 294 (372)
Q Consensus 221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~-~~~~g---~p~~i~~d~~G~lwva~~~~~~~~~~~~~ 294 (372)
-+...|+|++.. +++...+++|..|+.. +.+......+. .+..| .|--.+.|++-++.+...-+
T Consensus 372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~--------- 441 (498)
T KOG4328|consen 372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP--------- 441 (498)
T ss_pred eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC---------
Confidence 466779999886 6677778888888753 11111111111 11111 13445678877755554431
Q ss_pred cchhHHHHHHhcCccccccccCCCceEEEEECCCCcE-EEEEECCCC
Q 017371 295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI-IRNLVDPTG 340 (372)
Q Consensus 295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~-~~~~~~~~g 340 (372)
..|-.||++|+. +..+++|.-
T Consensus 442 -------------------------r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 442 -------------------------RPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred -------------------------cceeEEcCCCCEEeeeccCccc
Confidence 247778887655 667788764
No 222
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.83 E-value=4.5 Score=35.85 Aligned_cols=138 Identities=15% Similarity=0.076 Sum_probs=78.5
Q ss_pred cccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371 162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 162 ~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
....++.++.. .++++.+ +.-.+.++|..+++.......-..-.-+.++|+|+++.+.+. .
T Consensus 66 svdql~w~~~~~d~~atas-----------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-d 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS-----------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-D 127 (313)
T ss_pred chhhheeCCCCCcceEEec-----------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-c
Confidence 45567777654 5555544 344577777665555443333334456889999998887764 6
Q ss_pred CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecC-chhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371 241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL-DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 319 (372)
Q Consensus 241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~-~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 319 (372)
++|..++....+....+.+ .-..+.+....++++++.+.+. ... +..||.|+.+.. +.+++-+
T Consensus 128 D~it~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~GlG~v~----ILsypsLkpv~s--------i~AH~sn 191 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGLGCVE----ILSYPSLKPVQS--------IKAHPSN 191 (313)
T ss_pred ccEEEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCCceEE----EEeccccccccc--------cccCCcc
Confidence 6788888754433222222 1235677777888888887662 111 222333333322 2234444
Q ss_pred eEEEEECCCCcEEE
Q 017371 320 AHLIHVAEDGTIIR 333 (372)
Q Consensus 320 ~~v~~~~~~g~~~~ 333 (372)
-.-++++|+|+.+.
T Consensus 192 CicI~f~p~GryfA 205 (313)
T KOG1407|consen 192 CICIEFDPDGRYFA 205 (313)
T ss_pred eEEEEECCCCceEe
Confidence 55566677776654
No 223
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.78 E-value=6.7 Score=37.70 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=70.0
Q ss_pred CeEEcCCCCEEE-E-eCC-C---cEEEEc-CCCcEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccc
Q 017371 122 GLTSTKEGHLII-C-DNA-N---GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 122 gl~~d~dG~l~v-~-~~~-~---gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~ 193 (372)
++.+.|||+++. + +.+ . .++.+| ++| +.+...+... ....+.+.+||+. |++.... .....
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~-~~~~~------ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP---KFSSVSWSDDGKGFFYTRFDE-DQRTS------ 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE---ESEEEEECTTSSEEEEEECST-TTSS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc---ccceEEEeCCCCEEEEEEeCc-ccccc------
Confidence 466778997433 2 222 1 266677 666 1111221211 1113788888754 4443210 00000
Q ss_pred cccCCCeEEEEeCCCCeEE--EEeCCccCcc---eEEEecCCCEEEEEeCCC---CeEEEEEccCC--CCcceeeeccCC
Q 017371 194 EGKPHGQLLKYDPSSNITT--LVADGFYFAN---GVALSRDEDYVVVCESWK---FRCRKYWLKGE--RKGKLETFAENL 263 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~~--~~~~~~~~~~---gi~~~~dg~~l~v~~~~~---~~i~~~~~~g~--~~~~~~~~~~~~ 263 (372)
.......|+++...+...+ .+...-..+. ++..++|++++++..... ..++.+++... .......+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 0011446888887665433 4554433333 678899999988754333 35777776543 122333333322
Q ss_pred CCCCceeEEcCCCCEEEEEec
Q 017371 264 PGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 264 ~g~p~~i~~d~~G~lwva~~~ 284 (372)
.+. ........+.+|+-+..
T Consensus 277 ~~~-~~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 277 DGV-EYYVDHHGDRLYILTND 296 (414)
T ss_dssp SS--EEEEEEETTEEEEEE-T
T ss_pred Cce-EEEEEccCCEEEEeeCC
Confidence 221 11122224567876654
No 224
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.77 E-value=2.6 Score=40.38 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=35.4
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcce--eeecc--------------CCCCCCceeEEcCCC-CEEEEEe
Q 017371 221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAII 283 (372)
Q Consensus 221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~--~~~~~--------------~~~g~p~~i~~d~~G-~lwva~~ 283 (372)
+.-|.+|.|.++||++....+.|..|++..+..-+. +++.. .+.|.|.=+.+.-|| ++||++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 456889999999999999999999999987532211 11111 133457778899999 7999875
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
-
T Consensus 394 L 394 (461)
T PF05694_consen 394 L 394 (461)
T ss_dssp -
T ss_pred c
Confidence 3
No 225
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.77 E-value=10 Score=39.71 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCcEEEEecCCeEEEEe--CCceEEEEecCCCc----------ccCeEEc-----------------CCCCEEEEeCCCc
Q 017371 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT----------LVGLTST-----------------KEGHLIICDNANG 139 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p----------~~gl~~d-----------------~dG~l~v~~~~~g 139 (372)
+|.||+++.++.|+.+| +|+. .|......+ . |++.- .++++|+.+.+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~-lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE-KWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-EEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 68999999999999999 6763 333211110 1 22221 2347888876666
Q ss_pred EEEEc-CCCcEE--Eee--------ecCCcc--cccc-cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe
Q 017371 140 LHKVS-EDGVEN--FLS--------YVNGSK--LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205 (372)
Q Consensus 140 v~~~~-~~g~~~--l~~--------~~~~~~--~~~~-~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d 205 (372)
|+.+| ++|... +.. .....+ .... ..-.+ -+|.|+++.+.... .......|.|+.||
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~--------~~~~~~~G~I~A~D 342 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADN--------YSTDEPSGVIRAFD 342 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEeccccc--------ccccCCCcEEEEEE
Confidence 88888 677222 111 000000 0000 01111 25677776432100 01113568899999
Q ss_pred CCCCeEEEEeC
Q 017371 206 PSSNITTLVAD 216 (372)
Q Consensus 206 ~~t~~~~~~~~ 216 (372)
.+||+..+..+
T Consensus 343 a~TGkl~W~~~ 353 (764)
T TIGR03074 343 VNTGALVWAWD 353 (764)
T ss_pred CCCCcEeeEEe
Confidence 99998877543
No 226
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.71 E-value=0.068 Score=28.75 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.5
Q ss_pred CceeEEcCCCCEEEEEe
Q 017371 267 PDNINLAPDGTFWIAII 283 (372)
Q Consensus 267 p~~i~~d~~G~lwva~~ 283 (372)
...|..|++|+||+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 45688999999999985
No 227
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.67 E-value=5 Score=35.89 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=81.0
Q ss_pred CCccEEEcCCCcEEEE-e---cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE-E-c-CCC-cEE
Q 017371 80 HPEDASMDKNGVIYTA-T---RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-V-S-EDG-VEN 150 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~-~---~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~-~-~-~~g-~~~ 150 (372)
.+++.++.++|..+.. . ....|+... ++....+. ...... ...+|++|.+|+.+......+ + + .+| ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 6778888888854332 2 334455555 55554443 222333 677999999999976543322 2 2 344 332
Q ss_pred EeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEe---CCCCeEEE------Ee-CCcc
Q 017371 151 FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD---PSSNITTL------VA-DGFY 219 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d---~~t~~~~~------~~-~~~~ 219 (372)
..-....... .+..|.+.+|| ++-+.- +....++|+.-- ...+.... +. ....
T Consensus 103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~---------------~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 103 VEVDWPGLRG-RITALRVSPDGTRVAVVV---------------EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EEecccccCC-ceEEEEECCCCcEEEEEE---------------ecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 2222222111 56788999999 443321 111234555431 11231111 11 2233
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEE-EEccCC
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRK-YWLKGE 251 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~g~ 251 (372)
....++|..+++.++........+.. +..+|.
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred cceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 45678999888755555555555666 666664
No 228
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.67 E-value=9.6 Score=39.16 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cE-EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 192 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~-~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~ 192 (372)
.... .++++.-|+.-+.....| |-+++ .+| .+ .+... + .....+.++++|.-+++.++..
T Consensus 449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-~-ah~~~V~gla~D~~n~~~vsa~------------- 512 (910)
T KOG1539|consen 449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-P-AHKGEVTGLAVDGTNRLLVSAG------------- 512 (910)
T ss_pred cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-c-cccCceeEEEecCCCceEEEcc-------------
Confidence 3445 788888898666554444 66777 677 22 22111 0 1113567899999999888743
Q ss_pred ccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371 193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 272 (372)
Q Consensus 193 ~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~ 272 (372)
.+|-+-.+|...+....-..--..+.++..+.... +++.....-.|..||.-+.+..+ .|- ........+++
T Consensus 513 ----~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR--~f~-gh~nritd~~F 584 (910)
T KOG1539|consen 513 ----ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVR--EFW-GHGNRITDMTF 584 (910)
T ss_pred ----CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhH--Hhh-ccccceeeeEe
Confidence 45666667765444322222233455666665554 55555556678888865433221 222 22334678999
Q ss_pred cCCCCEEEE
Q 017371 273 APDGTFWIA 281 (372)
Q Consensus 273 d~~G~lwva 281 (372)
.+||+-.++
T Consensus 585 S~DgrWlis 593 (910)
T KOG1539|consen 585 SPDGRWLIS 593 (910)
T ss_pred CCCCcEEEE
Confidence 999974443
No 229
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.66 E-value=2.4 Score=41.75 Aligned_cols=114 Identities=12% Similarity=0.172 Sum_probs=60.4
Q ss_pred EEEcCCCcEEEEecCCeEEEEe-CCceE-EEEecCCC---cccCeEEcCCCCEEEEeC--------------CCcEEEEc
Q 017371 84 ASMDKNGVIYTATRDGWIKRLQ-DGTWV-NWKFIDSQ---TLVGLTSTKEGHLIICDN--------------ANGLHKVS 144 (372)
Q Consensus 84 i~~d~~G~l~v~~~~g~i~~~~-~g~~~-~~~~~~~~---p~~gl~~d~dG~l~v~~~--------------~~gv~~~~ 144 (372)
+..-++|.++++.. ..+..+| .|++. .+..+.+. .+ .+...++|++++... ...|+.++
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 55667888888765 6788888 77643 33333222 35 788889998766544 23588888
Q ss_pred CCC--cEEEee--ecCCc--------------------ccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCC
Q 017371 145 EDG--VENFLS--YVNGS--------------------KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHG 199 (372)
Q Consensus 145 ~~g--~~~l~~--~~~~~--------------------~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g 199 (372)
++| +..+.. .+... .-...|++..++ ++.|.+|- +...
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------Ccce
Confidence 777 333321 11000 012456788887 77888863 2455
Q ss_pred eEEEEeCCCCeEEEEeC
Q 017371 200 QLLKYDPSSNITTLVAD 216 (372)
Q Consensus 200 ~v~~~d~~t~~~~~~~~ 216 (372)
.|+++|..++++.+++.
T Consensus 294 ~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 294 AVIKIDYRTGKIKWILG 310 (477)
T ss_dssp EEEEEE-TTS-EEEEES
T ss_pred EEEEEECCCCcEEEEeC
Confidence 89999988899887663
No 230
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=93.63 E-value=4.3 Score=35.05 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCccEEEcCCCcEEEEecCCeEEEEe------C---C-ceE------EE---EecCCCcccCeEEcCCCCEEEEeCCCc
Q 017371 79 NHPEDASMDKNGVIYTATRDGWIKRLQ------D---G-TWV------NW---KFIDSQTLVGLTSTKEGHLIICDNANG 139 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~------~---g-~~~------~~---~~~~~~p~~gl~~d~dG~l~v~~~~~g 139 (372)
..-+.+++-|+|.||....+.+-+|+- + + +.. .. ..--+..+ ..++.++|.|..+.....
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy-c~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY-CTAWSPCGELIATGSNDK 111 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE-EEEecCccCeEEecCCCc
Confidence 456788999999999766555555442 1 1 000 00 11123445 778889998877755432
Q ss_pred ---EEEEcCC-----CcEEEeeecCCcccccccceEEc--c--CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371 140 ---LHKVSED-----GVENFLSYVNGSKLRFANDVVEA--S--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207 (372)
Q Consensus 140 ---v~~~~~~-----g~~~l~~~~~~~~~~~~~~l~~d--~--dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 207 (372)
++.++.+ |...-.....| .+.++++- + .|.|.++- +.++-.||.-|-.
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdg----tirdl~fld~~~s~~~il~s~----------------gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDG----TIRDLAFLDDPESGGAILASA----------------GAGDCKIYITDCG 171 (350)
T ss_pred eEEEEecccccccccCcceeeeecCC----ceeeeEEecCCCcCceEEEec----------------CCCcceEEEeecC
Confidence 4444411 10000011111 23444442 1 23455432 2234456666655
Q ss_pred CCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcce--eeeccC-C-CCCCceeEEcCCCCEEEEEe
Q 017371 208 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAEN-L-PGAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 208 t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~--~~~~~~-~-~g~p~~i~~d~~G~lwva~~ 283 (372)
+|+--....+.. -.-+++..-.+.++++.+.+..|..+++.-+..-+. ..|.+. + ..-...+++|+.|++.++..
T Consensus 172 ~g~~~~a~sght-ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 172 RGQGFHALSGHT-GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CCCcceeecCCc-ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 444322222111 112444444445677766655555445432110000 011110 1 11234588999999999876
Q ss_pred c
Q 017371 284 K 284 (372)
Q Consensus 284 ~ 284 (372)
.
T Consensus 251 ~ 251 (350)
T KOG0641|consen 251 A 251 (350)
T ss_pred C
Confidence 5
No 231
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.30 E-value=2.8 Score=40.63 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred CeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC
Q 017371 199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 276 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G 276 (372)
.+++.+|.++++...+.+-....-..+|+|||+.+.++...+ ..|+.+++.+....+ ..+..|.-..-...+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCC
Confidence 579999998888877766333333467999999999887654 457888887654222 22333333344567888
Q ss_pred C
Q 017371 277 T 277 (372)
Q Consensus 277 ~ 277 (372)
.
T Consensus 294 ~ 294 (425)
T COG0823 294 S 294 (425)
T ss_pred C
Confidence 5
No 232
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.19 E-value=5.1 Score=40.45 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=77.3
Q ss_pred CCcEEEEe-cC------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCCc------EEEEcC-CC-cEE
Q 017371 89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANG------LHKVSE-DG-VEN 150 (372)
Q Consensus 89 ~G~l~v~~-~~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~g------v~~~~~-~g-~~~ 150 (372)
+|.||+.. .+ ..+.+|| .++|...+.-. .+...|++.- +|.||+.....| +-++|+ .. .+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccc
Confidence 56888765 33 2456676 45555533211 1211155554 688998865433 556663 33 444
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc--ceEEEec
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSR 228 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~--~gi~~~~ 228 (372)
.+.... .+.-.++++ -+|+||+.-... .....-..+.+|||.+++++.+..-...- .|++..
T Consensus 411 va~m~~---~r~~~gv~~-~~g~iYi~GG~~-----------~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~- 474 (571)
T KOG4441|consen 411 VAPMLT---RRSGHGVAV-LGGKLYIIGGGD-----------GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL- 474 (571)
T ss_pred cCCCCc---ceeeeEEEE-ECCEEEEEcCcC-----------CCccccceEEEEcCCCCceeecCCcccccccceEEEE-
Confidence 432211 112223333 579999963210 00002357899999999988765433222 344433
Q ss_pred CCCEEEEEeCCC-----CeEEEEEccCC
Q 017371 229 DEDYVVVCESWK-----FRCRKYWLKGE 251 (372)
Q Consensus 229 dg~~l~v~~~~~-----~~i~~~~~~g~ 251 (372)
++.+|+....+ ..|.+|++...
T Consensus 475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 475 -NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred -CCEEEEECCccCCCccceEEEEcCCCC
Confidence 44688876432 34888887654
No 233
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.18 E-value=7.4 Score=36.38 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=18.9
Q ss_pred CCCccEEEcCCCc-EEEEecCCeEEEEe
Q 017371 79 NHPEDASMDKNGV-IYTATRDGWIKRLQ 105 (372)
Q Consensus 79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~ 105 (372)
...-+++..|||. |-.|..+|.|..|+
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEec
Confidence 3455677888884 44455788888888
No 234
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.12 E-value=0.52 Score=28.78 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCcceEEEe
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFANGVALS 227 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~ 227 (372)
..+.|..+|+.+++..........|.+++++
T Consensus 12 ~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 4678999999877765544445778888764
No 235
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.10 E-value=8.6 Score=36.91 Aligned_cols=219 Identities=10% Similarity=0.074 Sum_probs=110.4
Q ss_pred CccEEEcCCCcEEEE-ecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCC-CCEEEEeCCCcEEEEc-CCC-cEEEee
Q 017371 81 PEDASMDKNGVIYTA-TRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKE-GHLIICDNANGLHKVS-EDG-VENFLS 153 (372)
Q Consensus 81 p~~i~~d~~G~l~v~-~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~d-G~l~v~~~~~gv~~~~-~~g-~~~l~~ 153 (372)
..++.+-.||.|..+ +..|-|..|| +.+ .+.+.. ...|..-..|.+. +.+++...+.++.++. .++ ..+.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~-- 147 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA-- 147 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE--
Confidence 455667678877654 4677777777 221 111111 1223314555544 4566665556666665 444 2111
Q ss_pred ecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCC
Q 017371 154 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDED 231 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~ 231 (372)
...+. --++...++.+ +++|.+|- .-+|.|-.+|..+....++.-+...| ..+.+-|.|.
T Consensus 148 ~l~~h-tDYVR~g~~~~~~~hivvtG-----------------sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 148 ELSGH-TDYVRCGDISPANDHIVVTG-----------------SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS 209 (487)
T ss_pred EecCC-cceeEeeccccCCCeEEEec-----------------CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC
Confidence 11111 12344455544 45677763 34677777776544322221122223 2345556665
Q ss_pred EEEEEeCCCCeEEEEEcc-CCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371 232 YVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 309 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~ 309 (372)
++++- +++.|..+|+. |.+.-. .+. +.......+++.++++ |+-+...
T Consensus 210 -~iasA-gGn~vkVWDl~~G~qll~--~~~-~H~KtVTcL~l~s~~~rLlS~sLD------------------------- 259 (487)
T KOG0310|consen 210 -LIASA-GGNSVKVWDLTTGGQLLT--SMF-NHNKTVTCLRLASDSTRLLSGSLD------------------------- 259 (487)
T ss_pred -EEEEc-CCCeEEEEEecCCceehh--hhh-cccceEEEEEeecCCceEeecccc-------------------------
Confidence 55554 45668888876 332111 111 1112246678888874 4444433
Q ss_pred ccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371 310 FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 363 (372)
Q Consensus 310 ~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~ 363 (372)
+.+-.|+ .+-++++.+.-|.+. + ..++..++.++++|-.++
T Consensus 260 ----------~~VKVfd~t~~Kvv~s~~~~~pv-L--siavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 260 ----------RHVKVFDTTNYKVVHSWKYPGPV-L--SIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ----------cceEEEEccceEEEEeeecccce-e--eEEecCCCceEEEecccc
Confidence 4566666 466777777665432 1 122333457888887554
No 236
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.98 E-value=6.4 Score=35.16 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=72.6
Q ss_pred CcccCeEEcCCCCEEEE-e---CCCcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371 118 QTLVGLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 192 (372)
Q Consensus 118 ~p~~gl~~d~dG~l~v~-~---~~~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~ 192 (372)
.+. ..++.+||..+.+ . ....|+....++ ...+. .+..+. .-.+|++|.+|+.+..
T Consensus 25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~---~PS~d~~g~~W~v~~~------------ 85 (253)
T PF10647_consen 25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLT---RPSWDPDGWVWTVDDG------------ 85 (253)
T ss_pred ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccc---cccccCCCCEEEEEcC------------
Confidence 345 7888888864333 2 234466666444 44332 222233 3378899999997652
Q ss_pred ccccCCCeEEEEeCCCCeEEEEe---CCcc-CcceEEEecCCCEEEEEeC--CCCeEEEEEccCCCCc------ceeeec
Q 017371 193 LEGKPHGQLLKYDPSSNITTLVA---DGFY-FANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKG------KLETFA 260 (372)
Q Consensus 193 ~~~~~~g~v~~~d~~t~~~~~~~---~~~~-~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~g~~~~------~~~~~~ 260 (372)
....++++ +..+++...+. ..+. .-..+.+++||..+-+.-. .+.+|+.--+....-+ ......
T Consensus 86 ---~~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 86 ---SGGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred ---CCceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 12223333 32223322211 1111 3356889999998777652 2355665443211111 111111
Q ss_pred cCCCCCCceeEEcCCCCEEEEEec
Q 017371 261 ENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 261 ~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.....-...+..-.++.|.|....
T Consensus 162 ~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ccccCcceeeeecCCCEEEEEeCC
Confidence 111122456777788888887765
No 237
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.78 E-value=2.7 Score=38.29 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=79.2
Q ss_pred CCeEEEEeCCCCeEEEEe------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccC---CCCC
Q 017371 198 HGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN---LPGA 266 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~---~~g~ 266 (372)
..-|..+|.-||+.+.-. +.+.....++|++||..||... +..|..|+...+ .......+..+ ..|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 344666666666655422 2344566899999999887653 456778887422 21111122211 2233
Q ss_pred CceeEEcCCC--CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeec
Q 017371 267 PDNINLAPDG--TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS 344 (372)
Q Consensus 267 p~~i~~d~~G--~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~ 344 (372)
...+++.+-. .+=++.+.. .-+|++ +.++.+++.+....|.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~-~~~~~pl~llggh~gG--- 252 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYN-DDGRRPLQLLGGHGGG--- 252 (406)
T ss_pred eeeeeccCCCCcceeeecccc---------------------------------eeeeEe-cCCCCceeeecccCCC---
Confidence 4455555533 455555542 123443 3467788887765553
Q ss_pred cceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371 345 FVTSGLQ--VDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 345 ~~t~~~~--~~g~L~igs~~~~~i~~~~~ 371 (372)
+|.... ++++||.|+...++|-..||
T Consensus 253 -vThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 253 -VTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred -eeeEEeccCcCeecccccCCCeEEEEee
Confidence 555544 57899999999999998886
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.73 E-value=2.7 Score=41.98 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=37.6
Q ss_pred CeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeC
Q 017371 122 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~ 179 (372)
.+++.|||.-.+...+..++.+| .+| .+++.... ..++.++...||+.+.+-+
T Consensus 17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHK-----DtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHK-----DTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred eeEECCCCceEEEecCCEEEEEeCCCccccccccccc-----ceEEEEEEccCCceeccCC
Confidence 89999999755555567899999 666 55543211 2467889999999887644
No 239
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.68 E-value=0.17 Score=27.21 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=14.6
Q ss_pred eccceeeEEE-CCEEEEEeC
Q 017371 343 MSFVTSGLQV-DNHLYVISL 361 (372)
Q Consensus 343 ~~~~t~~~~~-~g~L~igs~ 361 (372)
.+.+.++.++ +|+||+|+.
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 3467888888 699999986
No 240
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.67 E-value=10 Score=36.70 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCCeEEEEeCCCCeEEEE--eCCcc-CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371 197 PHGQLLKYDPSSNITTLV--ADGFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~--~~~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d 273 (372)
..|.|..+|.. |.-... ..... -..||+|+|-+..|+++--.+.+|+.|+....+....-.+ + .| -..+++.
T Consensus 185 d~G~VtlwDv~-g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~-~P--lstvaf~ 259 (673)
T KOG4378|consen 185 DKGAVTLWDVQ-GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-S-HP--LSTVAFS 259 (673)
T ss_pred cCCeEEEEecc-CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-c-CC--cceeeec
Confidence 45667777754 322111 11122 2469999999888999888888999999864332222222 1 22 3568899
Q ss_pred CCCCEEEEEec
Q 017371 274 PDGTFWIAIIK 284 (372)
Q Consensus 274 ~~G~lwva~~~ 284 (372)
++|.+.++...
T Consensus 260 ~~G~~L~aG~s 270 (673)
T KOG4378|consen 260 ECGTYLCAGNS 270 (673)
T ss_pred CCceEEEeecC
Confidence 99988887766
No 241
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.64 E-value=9.7 Score=36.34 Aligned_cols=141 Identities=17% Similarity=0.059 Sum_probs=74.1
Q ss_pred ccEEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc-CC-C-cEEEee
Q 017371 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-ED-G-VENFLS 153 (372)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~-g-~~~l~~ 153 (372)
-++|+.+||...+.. .+..|..|+ +.+ +..|..-.+... +++|. ...+||.+..++++..++ .+ . ++.+..
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence 358888999655444 555566676 443 334444445556 88886 334799998888887777 22 2 333311
Q ss_pred ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCE
Q 017371 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDY 232 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~ 232 (372)
.. ..+-+|..-..+++. |. ..-..+-+||++ |+ +.+.+.. +-.++..+++=.+.
T Consensus 285 Hq-----d~v~~IdaL~reR~v-tV--------------GgrDrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~-- 339 (479)
T KOG0299|consen 285 HQ-----DGVLGIDALSRERCV-TV--------------GGRDRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDE-- 339 (479)
T ss_pred Cc-----cceeeechhcccceE-Ee--------------ccccceeEEEec-cc--cceeeeeCCCCCeeeEEEeccc--
Confidence 10 112223222333322 11 112245577877 33 2222333 33356677765444
Q ss_pred EEEEeCCCCeEEEEEc
Q 017371 233 VVVCESWKFRCRKYWL 248 (372)
Q Consensus 233 l~v~~~~~~~i~~~~~ 248 (372)
-|++.+.++.|.-+.+
T Consensus 340 HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSL 355 (479)
T ss_pred ceeeccCCceEEEeee
Confidence 4555555666766654
No 242
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=92.56 E-value=0.66 Score=28.75 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=29.1
Q ss_pred CcEEEEeCCCCCCCcccccccccccCCC-eEEEEeCCCCeEEE-EeCCccCcceEEEec
Q 017371 172 GSLYFTVSSSKYLPHEYCLDILEGKPHG-QLLKYDPSSNITTL-VADGFYFANGVALSR 228 (372)
Q Consensus 172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~ 228 (372)
|+||.+|.+ .. .|.+.+.+....++ +..++..|+|+++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999874 33 78888776555444 557799999999874
No 243
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.35 E-value=16 Score=38.22 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=63.7
Q ss_pred CcEEEEecCCeEEEEe--CCceEE---------EEecCCC-c------ccCeEEcCCCCEEEEeC---------CCc-EE
Q 017371 90 GVIYTATRDGWIKRLQ--DGTWVN---------WKFIDSQ-T------LVGLTSTKEGHLIICDN---------ANG-LH 141 (372)
Q Consensus 90 G~l~v~~~~g~i~~~~--~g~~~~---------~~~~~~~-p------~~gl~~d~dG~l~v~~~---------~~g-v~ 141 (372)
++||+++.+|+|+.+| +|+... +....+. + .+.-.+. +|.++++.. ..| |.
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEE
Confidence 4899999999999999 676542 1111000 0 1011222 567777642 123 66
Q ss_pred EEc-CCCcEEEeeec----------CCc-----ccccccceEEccC-CcEEEEeCCCC---CCCcccccccccccCCCeE
Q 017371 142 KVS-EDGVENFLSYV----------NGS-----KLRFANDVVEASD-GSLYFTVSSSK---YLPHEYCLDILEGKPHGQL 201 (372)
Q Consensus 142 ~~~-~~g~~~l~~~~----------~~~-----~~~~~~~l~~d~d-G~i~vtd~~~~---~~~~~~~~~~~~~~~~g~v 201 (372)
.+| .+|...+.... ++. .......+++|++ |.+|+...+.. ++... ......-.+.|
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r---~~~~n~y~~sl 416 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDR---TPADEKYSSSL 416 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcc---ccCcccccceE
Confidence 688 77722221110 110 0012235677765 57777543211 11100 01123346789
Q ss_pred EEEeCCCCeEEEEeC
Q 017371 202 LKYDPSSNITTLVAD 216 (372)
Q Consensus 202 ~~~d~~t~~~~~~~~ 216 (372)
+.+|.+||+.++..+
T Consensus 417 vALD~~TGk~~W~~Q 431 (764)
T TIGR03074 417 VALDATTGKERWVFQ 431 (764)
T ss_pred EEEeCCCCceEEEec
Confidence 999999999888653
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=7.2 Score=36.45 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=61.4
Q ss_pred ccccccCCCeEEEEeCCCCeEEEEeCC--ccCc-ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371 191 DILEGKPHGQLLKYDPSSNITTLVADG--FYFA-NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 267 (372)
Q Consensus 191 ~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p 267 (372)
.+.+....+.|..||+..+. +.++.- ...| ..+.+.|+|+++|++++. ..+..||+.+.++.. .+.....|-+
T Consensus 218 ~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsi 293 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSI 293 (412)
T ss_pred eEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCc
Confidence 34556678899999998543 333321 1112 346688999999999874 569999987654332 2233456678
Q ss_pred ceeEEcCCCCEEEEEecCc
Q 017371 268 DNINLAPDGTFWIAIIKLD 286 (372)
Q Consensus 268 ~~i~~d~~G~lwva~~~~~ 286 (372)
..|..++.+.+..++.-.|
T Consensus 294 rsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred ceEEEcCCCceEEeeccce
Confidence 8999999887777765544
No 245
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.43 E-value=0.76 Score=28.01 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=28.2
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d 273 (372)
||+++||+++...+.|..++..+.+ .... .. ....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~-i~-vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIAT-IP-VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEE-EE-CCCCCceEEeC
Confidence 5788999999999999999875421 1111 11 23458888764
No 246
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.40 E-value=0.66 Score=33.89 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=34.1
Q ss_pred cCCeEEEEeCCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcEEEEc
Q 017371 97 RDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS 144 (372)
Q Consensus 97 ~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv~~~~ 144 (372)
.-|.|.-++.++.+........|+ ||++++++ .|||++.. +.|+.+.
T Consensus 34 ~~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 34 PWGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 335677777666777777778899 99999987 58999866 3455554
No 247
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.30 E-value=14 Score=35.58 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCccEEEcC-CCcEE-EEecCCeEEEEe-CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEee
Q 017371 79 NHPEDASMDK-NGVIY-TATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS 153 (372)
Q Consensus 79 ~~p~~i~~d~-~G~l~-v~~~~g~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~ 153 (372)
...++.++.+ ++.+. .|..||.|.-|| .-. ........+.|...+.+-|.|.+.++..+.-+..+| ..|-+.+..
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 3455666665 44454 455899999998 211 223334556777577788999998887777788888 545222211
Q ss_pred ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCC
Q 017371 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDE 230 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg 230 (372)
.. .-...+..+.+..+++-.++ +.-++.|-.||. ...+++ ..+.+|. .++++||+
T Consensus 234 ~~--~H~KtVTcL~l~s~~~rLlS-----------------~sLD~~VKVfd~--t~~Kvv-~s~~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 234 MF--NHNKTVTCLRLASDSTRLLS-----------------GSLDRHVKVFDT--TNYKVV-HSWKYPGPVLSIAVSPDD 291 (487)
T ss_pred hh--cccceEEEEEeecCCceEee-----------------cccccceEEEEc--cceEEE-EeeecccceeeEEecCCC
Confidence 11 11234556777777765554 224667777874 344433 2444555 46799998
Q ss_pred CEEEEEeCCC
Q 017371 231 DYVVVCESWK 240 (372)
Q Consensus 231 ~~l~v~~~~~ 240 (372)
..+++.-+++
T Consensus 292 ~t~viGmsnG 301 (487)
T KOG0310|consen 292 QTVVIGMSNG 301 (487)
T ss_pred ceEEEecccc
Confidence 8777776543
No 248
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=12 Score=33.97 Aligned_cols=170 Identities=14% Similarity=0.097 Sum_probs=88.9
Q ss_pred CCCcEEEEecCCeEEEEe-C--CceEEE--EecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCCcc
Q 017371 88 KNGVIYTATRDGWIKRLQ-D--GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSK 159 (372)
Q Consensus 88 ~~G~l~v~~~~g~i~~~~-~--g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~ 159 (372)
++...|+++.+..+..+| . .+.+.. ....+..+ +..+. |+ +||++...|++.+| .+- ..+++.......
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 356899999777788888 2 222222 22224444 55554 54 89999888999999 544 444444322211
Q ss_pred cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-c--CcceEEEecCCCEEEEE
Q 017371 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-Y--FANGVALSRDEDYVVVC 236 (372)
Q Consensus 160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~--~~~gi~~~~dg~~l~v~ 236 (372)
....++++ +...-|+++ .+++|..+|-..-.--++.... . ...++.++ .++.|++
T Consensus 172 -~d~~~v~I-SGn~AYvA~------------------~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~v 229 (370)
T COG5276 172 -GDTHDVAI-SGNYAYVAW------------------RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLV 229 (370)
T ss_pred -CCceeEEE-ecCeEEEEE------------------eCCCeEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEE
Confidence 11235555 334567754 3456777765422111111111 1 22334444 3456666
Q ss_pred eCCCCeEEEEEccCCCCcceeeeccCCCCCCcee--EEcCCCCEEEEEecC
Q 017371 237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI--NLAPDGTFWIAIIKL 285 (372)
Q Consensus 237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i--~~d~~G~lwva~~~~ 285 (372)
.- +..+..++.++++.. ..+..-.+..|.++ ..=++...|++....
T Consensus 230 vy-~egvlivd~s~~ssp--~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~ 277 (370)
T COG5276 230 VY-DEGVLIVDVSGPSSP--TVFGSYETSNPVSISTVPVSGEYAYVADGAK 277 (370)
T ss_pred Ec-ccceEEEecCCCCCc--eEeeccccCCcccccceecccceeeeecccc
Confidence 64 345888888776422 23322233334444 222445688888763
No 249
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=90.85 E-value=11 Score=33.52 Aligned_cols=179 Identities=9% Similarity=0.041 Sum_probs=95.0
Q ss_pred EEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCC--cEEEeeec
Q 017371 84 ASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLSYV 155 (372)
Q Consensus 84 i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g--~~~l~~~~ 155 (372)
|-...+|.|.++. .|.....|- +|+ +-++.--.|-.+ .+.+|.+-...++.+ ++.+..+| ++| +..+...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~- 93 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN- 93 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-
Confidence 5566677777665 344333332 443 222322233344 566665555555433 34567777 777 3323221
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-------CCe-EEEEeCCccCcceEEEe
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALS 227 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-------t~~-~~~~~~~~~~~~gi~~~ 227 (372)
..+..+.++.+|++.+.-.... ....+.|..+|.. ..+ +..+...-..++...|+
T Consensus 94 -----~~Vk~~~F~~~gn~~l~~tD~~------------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 94 -----SPVKRVDFSFGGNLILASTDKQ------------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred -----CeeEEEeeccCCcEEEEEehhh------------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 1345678888887555322100 1123344444432 122 33333444556677789
Q ss_pred cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+-+++++.. -.++.|.+|+...++.- .+.. +......++|...+|..++|....
T Consensus 157 ~l~~~ii~G-he~G~is~~da~~g~~~-v~s~-~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 157 PLGETIIAG-HEDGSISIYDARTGKEL-VDSD-EEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ccCCEEEEe-cCCCcEEEEEcccCcee-eech-hhhccccccccccCCcceEEeccc
Confidence 988855544 45678999998653111 1111 111224678999999999998765
No 250
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=13 Score=33.65 Aligned_cols=143 Identities=12% Similarity=0.153 Sum_probs=81.5
Q ss_pred ccEEEcC-CCcEEEEecCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCC
Q 017371 82 EDASMDK-NGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG 157 (372)
Q Consensus 82 ~~i~~d~-~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~ 157 (372)
.++-+++ .+.|.+++++|.+..++ ...-.......+.|++..+|.++-.+|+++.+.-|.++| ..+ ...+.....
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~- 95 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDE- 95 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCC-
Confidence 3455664 45888999999998888 322111122345676688888788899998877788899 555 443322211
Q ss_pred cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceE-EEecCCCEEEEE
Q 017371 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV-ALSRDEDYVVVC 236 (372)
Q Consensus 158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi-~~~~dg~~l~v~ 236 (372)
.+..|.....-...++ +..+.+|-.+|+... .....+..++-| +.+--++.|+|.
T Consensus 96 ----~i~ci~~~~~~~~vIs-----------------gsWD~~ik~wD~R~~---~~~~~~d~~kkVy~~~v~g~~LvVg 151 (323)
T KOG1036|consen 96 ----GIRCIEYSYEVGCVIS-----------------GSWDKTIKFWDPRNK---VVVGTFDQGKKVYCMDVSGNRLVVG 151 (323)
T ss_pred ----ceEEEEeeccCCeEEE-----------------cccCccEEEEecccc---ccccccccCceEEEEeccCCEEEEe
Confidence 1222333222223333 335667777887531 112222233332 345556656664
Q ss_pred eCCCCeEEEEEccC
Q 017371 237 ESWKFRCRKYWLKG 250 (372)
Q Consensus 237 ~~~~~~i~~~~~~g 250 (372)
+.+.++..|++..
T Consensus 152 -~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 152 -TSDRKVLIYDLRN 164 (323)
T ss_pred -ecCceEEEEEccc
Confidence 3466788898864
No 251
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.46 E-value=26 Score=37.03 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=61.4
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEEeCCC
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
.+.++..+|++.+.++-+ -++.|..+|..+.+...+..+ ....-|+.|||-|++ ++...+
T Consensus 131 DV~Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqsd 191 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQSD 191 (942)
T ss_pred ccceeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCe--eeeecC
Confidence 455788889998888744 467899999876654444433 456779999999973 344445
Q ss_pred CeEEEEEccCCCCcce----eeeccCCCC--CCceeEEcCCCCEEEEEec
Q 017371 241 FRCRKYWLKGERKGKL----ETFAENLPG--APDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 241 ~~i~~~~~~g~~~~~~----~~~~~~~~g--~p~~i~~d~~G~lwva~~~ 284 (372)
+|..+||--.. .+-. +.|. .-++ +-.-+...|||.+.++..+
T Consensus 192 Drtikvwrt~d-w~i~k~It~pf~-~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 192 DRTLKVWRTSD-WGIEKSITKPFE-ESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred CceEEEEEccc-ceeeEeeccchh-hCCCcceeeecccCCCcCeecchhh
Confidence 56666654221 1111 1221 1122 2223456899988887765
No 252
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.29 E-value=10 Score=34.91 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=66.4
Q ss_pred CeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeec-------CCcccccccceEEc----cCCcEEEEeCCCCCCCcc
Q 017371 122 GLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYV-------NGSKLRFANDVVEA----SDGSLYFTVSSSKYLPHE 187 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~-------~~~~~~~~~~l~~d----~dG~i~vtd~~~~~~~~~ 187 (372)
++..+++|+++|+.-. ..|++++ .+| +....... +...+..-++..+- .+++|-+-|-..
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~------ 221 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNAN------ 221 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCC------
Confidence 7778889998887543 5799999 777 43332211 11123344445554 566666654310
Q ss_pred cccccccccCCCeEEEEeCCCCeEEEEeCCccCcce--------EEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG--------VALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 188 ~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g--------i~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
... .......++++.+|+.+.+++.+..-...+.+ +..-|.|+ ++++.....++.-|+.+|
T Consensus 222 ~~~-~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 222 SDF-NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred CCC-CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 000 12234578899999987666554322212221 33445555 666666666666666555
No 253
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=90.24 E-value=15 Score=34.05 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=84.0
Q ss_pred CCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC--
Q 017371 76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-- 147 (372)
Q Consensus 76 g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g-- 147 (372)
|.+...+++++.+.. +|+.+..++.|.+|| .+++ +.+..-....+ +|.+.|.-++.++.... -+..+| ...
T Consensus 191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence 445567788888543 666666889999999 4443 33322233455 77777777766665443 344555 443
Q ss_pred cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEE
Q 017371 148 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA 225 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~ 225 (372)
+..+. |-. ..+..+.+.+ |+.|+-+. -++.|..+|...|+.-...... .....++
T Consensus 270 V~~l~----GH~-~~V~~V~~~~~dpqvit~S------------------~D~tvrlWDl~agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 270 VHVLS----GHT-NPVASVMCQPTDPQVITGS------------------HDSTVRLWDLRAGKTMITLTHHKKSVRALC 326 (460)
T ss_pred EEEec----CCC-CcceeEEeecCCCceEEec------------------CCceEEEeeeccCceeEeeecccceeeEEe
Confidence 44432 211 1233444433 66776542 3556777787666654443332 2345678
Q ss_pred EecCCCEEEEEeCCCCeEEEEEcc
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
++|+.. ++.+.+ .+.|..+.+.
T Consensus 327 lhP~e~-~fASas-~dnik~w~~p 348 (460)
T KOG0285|consen 327 LHPKEN-LFASAS-PDNIKQWKLP 348 (460)
T ss_pred cCCchh-hhhccC-CccceeccCC
Confidence 888875 555544 4457666654
No 254
>PHA02790 Kelch-like protein; Provisional
Probab=90.23 E-value=9.6 Score=37.63 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCcEEEEec---CCeEEEEe--CCceEEEEecCCCccc--CeEEcCCCCEEEEeCCC----cEEEEc-CCC-cEEEeeec
Q 017371 89 NGVIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLV--GLTSTKEGHLIICDNAN----GLHKVS-EDG-VENFLSYV 155 (372)
Q Consensus 89 ~G~l~v~~~---~g~i~~~~--~g~~~~~~~~~~~p~~--gl~~d~dG~l~v~~~~~----gv~~~~-~~g-~~~l~~~~ 155 (372)
+|.||+... ...+.+++ .++|....+. ..+.. +.+. -+|.|||..... .+.++| .++ .+..+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l-~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m- 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL-LKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST- 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCC-CCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-
Confidence 567776542 13466676 4555544321 11211 2222 378999975422 255667 333 4433221
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDY 232 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~ 232 (372)
+-. ....-+..-+|+||+. .|.+-+||+++++++.+.. +..| .+++.- ++ .
T Consensus 395 ~~~---r~~~~~~~~~~~IYv~--------------------GG~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~-~ 448 (480)
T PHA02790 395 YYP---HYKSCALVFGRRLFLV--------------------GRNAEFYCESSNTWTLIDD-PIYPRDNPELIIV-DN-K 448 (480)
T ss_pred CCc---cccceEEEECCEEEEE--------------------CCceEEecCCCCcEeEcCC-CCCCccccEEEEE-CC-E
Confidence 111 1112233457899994 2457789999998887643 2222 234433 34 4
Q ss_pred EEEEe
Q 017371 233 VVVCE 237 (372)
Q Consensus 233 l~v~~ 237 (372)
+|+..
T Consensus 449 IYviG 453 (480)
T PHA02790 449 LLLIG 453 (480)
T ss_pred EEEEC
Confidence 88765
No 255
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.20 E-value=23 Score=35.88 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=70.1
Q ss_pred EEEEe--CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCCC-c------EEEEcC-CC-cEEEeeecCCcccccccceEE
Q 017371 101 IKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNAN-G------LHKVSE-DG-VENFLSYVNGSKLRFANDVVE 168 (372)
Q Consensus 101 i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~-g------v~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~ 168 (372)
+..+| .+++..... +..+...++++- +|.||++.... | +.++|+ .+ ...++.... .+.-.++++
T Consensus 303 ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~~ 378 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVAV 378 (571)
T ss_pred eEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeEE
Confidence 44555 444444332 112222266665 57899986544 3 556663 33 333322111 112223333
Q ss_pred ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC------Ce
Q 017371 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------FR 242 (372)
Q Consensus 169 d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~~ 242 (372)
=+|.||+.-.. .....-..+-+|||.+.+++.+..-...-.+.+...-++.+|+..-.. ..
T Consensus 379 -l~g~iYavGG~------------dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 379 -LDGKLYAVGGF------------DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred -ECCEEEEEecc------------ccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce
Confidence 47889885221 011123468899999999888765444333444333345699876411 46
Q ss_pred EEEEEccCC
Q 017371 243 CRKYWLKGE 251 (372)
Q Consensus 243 i~~~~~~g~ 251 (372)
+.+|++.+.
T Consensus 446 ve~YDP~t~ 454 (571)
T KOG4441|consen 446 VECYDPETN 454 (571)
T ss_pred EEEEcCCCC
Confidence 788887654
No 256
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.19 E-value=18 Score=36.01 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=42.1
Q ss_pred EEeCCccCcceEEEecCCCEEEEEe--CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 017371 213 LVADGFYFANGVALSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 284 (372)
Q Consensus 213 ~~~~~~~~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~ 284 (372)
.+......-+.+.|+.+|++|-+.. .++.+|+.+.+.-.+ ....|. ...|.+-...+-+.- .++|++..
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~ 587 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFR-KSKGLVQRVKFHPSKPYLFVATQR 587 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchh-hcCCceeEEEecCCCceEEEEecc
Confidence 3444455567789999999877643 344678888775321 112332 233556666676655 68888765
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.15 E-value=17 Score=35.73 Aligned_cols=111 Identities=10% Similarity=0.110 Sum_probs=68.3
Q ss_pred EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEc----CCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCccccc
Q 017371 92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST----KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 162 (372)
Q Consensus 92 l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d----~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~ 162 (372)
+..|+..|.|+-++ .|++......++.+- .+... .-|-||-++....+..++ .++ +..+. .+. ..
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~--~~ 146 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQK--PL 146 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeec---cCC--Cc
Confidence 45566778788777 677666555444332 22222 234566665555566676 444 22221 121 24
Q ss_pred ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEe
Q 017371 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALS 227 (372)
Q Consensus 163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~ 227 (372)
+..+.+.+||.+..+ ..+.|-.+|.+++++-..+++...|. .+.|.
T Consensus 147 ~~sl~is~D~~~l~~-------------------as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 147 VSSLCISPDGKILLT-------------------ASRQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred cceEEEcCCCCEEEe-------------------ccceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 568899999998876 45678889998898888888877664 34443
No 258
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.10 E-value=18 Score=34.72 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCccEEEcCCCcEEE-EecCCeEEEEe-CCc-eEEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-cEEEee
Q 017371 80 HPEDASMDKNGVIYT-ATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLS 153 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-~~~l~~ 153 (372)
+..+++...+|.+.+ |..+|.+.-|+ +|. ...+..-- .|+..|....+|+..++ +.+.....+| ..| ..+...
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHK-GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccC-CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 566788888896654 55788777777 664 33333322 34338888888874444 3334567777 667 443322
Q ss_pred ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe--EEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYDPSSNITTLVADGFYFANGVALSRDED 231 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~ 231 (372)
. +...++.++ |+++.. +......+. ||+++.++ -+..+...-..-+++.++|.|.
T Consensus 316 ~------~s~~~lDVd-----W~~~~~-----------F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 316 F------HSAPALDVD-----WQSNDE-----------FATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred e------ccCCccceE-----EecCce-----------EeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCc
Confidence 1 111133332 333221 011123444 45555442 2222222334457888999887
Q ss_pred EEEEEeCCCCeEE
Q 017371 232 YVVVCESWKFRCR 244 (372)
Q Consensus 232 ~l~v~~~~~~~i~ 244 (372)
|+.+-+.+..+.
T Consensus 373 -LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 373 -LLASCSDDGTLK 384 (524)
T ss_pred -eEEEecCCCeeE
Confidence 555555444343
No 259
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=15 Score=33.39 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371 128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 204 (372)
Q Consensus 128 dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~ 204 (372)
....|+++...|++.+| .+- .+.+ ...+.. ....++.+ .....|++|- +.+++.+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt~--gyaygv~v-sGn~aYVadl------------------ddgfLiv 153 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLI-GFLNTD--GYAYGVYV-SGNYAYVADL------------------DDGFLIV 153 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCccee-ccccCC--ceEEEEEe-cCCEEEEeec------------------cCcEEEE
Confidence 56789999889999999 332 2221 111110 23334444 2345788763 3457777
Q ss_pred eCCCCeEEEEeCCccCcc----eEEEecCCCEEEEEeCCCCeEEEEEccCCC
Q 017371 205 DPSSNITTLVADGFYFAN----GVALSRDEDYVVVCESWKFRCRKYWLKGER 252 (372)
Q Consensus 205 d~~t~~~~~~~~~~~~~~----gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~ 252 (372)
|..+-+--+++.....+. -++++ |++-|++.. +..+..+++..+.
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~ 202 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPH 202 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCC
Confidence 765443333333333333 35555 778998875 4568888887653
No 260
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.90 E-value=24 Score=35.67 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeC
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDN 136 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~ 136 (372)
--..+++-|||.=.+-..+.+++.+| +|. ..+...--...+ .++...||..+.+..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCC
Confidence 45678999999544444577899999 554 333222222345 778888888776643
No 261
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=88.81 E-value=16 Score=32.37 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=31.6
Q ss_pred EEEEecCCeEEEEe-----CCc-----eEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc
Q 017371 92 IYTATRDGWIKRLQ-----DGT-----WVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS 144 (372)
Q Consensus 92 l~v~~~~g~i~~~~-----~g~-----~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~ 144 (372)
+++...+|.|-++. +|+ ++.+..+ ...- |+..| ..|.||++...-+++++.
T Consensus 171 vfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~-tQTE-G~VaDdEtG~LYIaeEdvaiWK~~ 232 (364)
T COG4247 171 VFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIP-TQTE-GMVADDETGFLYIAEEDVAIWKYE 232 (364)
T ss_pred EEEecCCCceeEEEEEecCCceEcceeeEeeecC-Cccc-ceeeccccceEEEeeccceeeecc
Confidence 33444667776654 333 2333221 2334 77776 568999999888899998
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.66 E-value=22 Score=35.24 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred EEEc-CCCcEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCcE-EEEc-CCC--cEEEe--e
Q 017371 84 ASMD-KNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVS-EDG--VENFL--S 153 (372)
Q Consensus 84 i~~d-~~G~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv-~~~~-~~g--~~~l~--~ 153 (372)
|..+ +.-.||++.....|||++ .|.+ ..+....+..+ .+.+.+-..|+.+....|. -.+| .+. ...+- .
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 4444 344688887677799998 6654 23333334444 6666666666666554454 4455 332 22221 1
Q ss_pred e----cCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371 154 Y----VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 216 (372)
Q Consensus 154 ~----~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~ 216 (372)
. ..+.....+..+.+..+| ++-| +...|.++.||..+.+...+.+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCceeecc
Confidence 1 112233456677777666 4444 3467899999998766555443
No 263
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=88.64 E-value=21 Score=33.39 Aligned_cols=153 Identities=12% Similarity=0.150 Sum_probs=99.0
Q ss_pred CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CC----ceEEEE----------------------ecCCCcccCeEEcC
Q 017371 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG----TWVNWK----------------------FIDSQTLVGLTSTK 127 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g----~~~~~~----------------------~~~~~p~~gl~~d~ 127 (372)
|.-...+++.++++|..+++. .|..|..++ .. +.+... ...-.|...+.+.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 544568889999999777765 677776665 11 111100 01112343677777
Q ss_pred CCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371 128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 204 (372)
Q Consensus 128 dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~ 204 (372)
.+.+|-+..++-|.++| ..| ...+... ...+.+...+.-++.++-+ ....+..+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs-----------------sdr~irl~ 327 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS-----------------SDRHIRLW 327 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------CCCceeec
Confidence 78899888888899999 655 3333221 2456777778778887643 34456778
Q ss_pred eCCCCeEEEEeC----CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 205 DPSSNITTLVAD----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 205 d~~t~~~~~~~~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
||.++.-..+.. .-..-.++.++|...+.+++.+.++.+..+|....
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 987764443322 22345678899999999999998888888877543
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.44 E-value=24 Score=34.65 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred eEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCc
Q 017371 100 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS 173 (372)
Q Consensus 100 ~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~ 173 (372)
.++-++ +|+-..+.-....|+..+.+.++|+=+.+-.+ ..+..++..+ +..+ .+|+ -|.+.+.+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~egp----RN~~~fnp~g~ 324 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEGP----RNTAFFNPHGN 324 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCCC----ccceEECCCCC
Confidence 355565 55544444443455548888898875544333 2466666445 2222 1222 25778888888
Q ss_pred EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--cceEEEecCCCEEEEEeCC
Q 017371 174 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--ANGVALSRDEDYVVVCESW 239 (372)
Q Consensus 174 i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--~~gi~~~~dg~~l~v~~~~ 239 (372)
|.+--.. +.-.|.+=.+|..+. +.+ ..+.. ..-+.|+|||.+++.+.+.
T Consensus 325 ii~lAGF--------------GNL~G~mEvwDv~n~--K~i-~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLAGF--------------GNLPGDMEVWDVPNR--KLI-AKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEeec--------------CCCCCceEEEeccch--hhc-cccccCCceEEEEcCCCcEEEEEecc
Confidence 7663211 113455556665431 111 22222 3356799999999988774
No 265
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.18 E-value=3.8 Score=40.20 Aligned_cols=145 Identities=9% Similarity=0.053 Sum_probs=74.3
Q ss_pred EEEcC-CCcEEEEecCCeEEEEe--CC-ceEEEE---e----cCC----CcccCeEEcCCC-CEEEEeCCCcEEEEc-CC
Q 017371 84 ASMDK-NGVIYTATRDGWIKRLQ--DG-TWVNWK---F----IDS----QTLVGLTSTKEG-HLIICDNANGLHKVS-ED 146 (372)
Q Consensus 84 i~~d~-~G~l~v~~~~g~i~~~~--~g-~~~~~~---~----~~~----~p~~gl~~d~dG-~l~v~~~~~gv~~~~-~~ 146 (372)
+-+.+ .|-|-+|+.+|.|-.|| +. .+..+. . +++ .+. .+.|+.+| .+-|+.....++.+| ..
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence 33443 45555666778777777 21 222211 1 111 145 78888667 566665544477777 43
Q ss_pred C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371 147 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225 (372)
Q Consensus 147 g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~ 225 (372)
. .-.........+......+.-|....++-+|.. .+-.+|..+|+.-........-|-+|
T Consensus 260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred CCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCcee
Confidence 3 221222111222222222222223344443331 13335667777666666666678899
Q ss_pred EecCCCEEEEEeCCCCeEEEEEcc
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
+-|++..++.++ .+..+..|.+.
T Consensus 321 ~~p~sGm~f~An-e~~~m~~yyiP 343 (703)
T KOG2321|consen 321 FVPGSGMFFTAN-ESSKMHTYYIP 343 (703)
T ss_pred eecCCceEEEec-CCCcceeEEcc
Confidence 999988565555 44567667664
No 266
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=88.08 E-value=17 Score=35.25 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=45.7
Q ss_pred ccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371 163 ANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 241 (372)
Q Consensus 163 ~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 241 (372)
..+|++.+.. .|+++.. -+-+|+.||...........--.--..++|.++|. .+++.+.++
T Consensus 211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~-~L~aG~s~G 272 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT-YLCAGNSKG 272 (673)
T ss_pred cCcceecCCccceEEEec-----------------ccceEEEeecccccccceeeecCCcceeeecCCce-EEEeecCCc
Confidence 3578888866 5555532 35679999976443222111111124689999997 455556688
Q ss_pred eEEEEEccCCC
Q 017371 242 RCRKYWLKGER 252 (372)
Q Consensus 242 ~i~~~~~~g~~ 252 (372)
+|+.|++.+.+
T Consensus 273 ~~i~YD~R~~k 283 (673)
T KOG4378|consen 273 ELIAYDMRSTK 283 (673)
T ss_pred eEEEEecccCC
Confidence 99999998653
No 267
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=87.99 E-value=19 Score=36.65 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=34.6
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 017371 223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.++++|.-+ +.++...+..|..|++...| +++.|.. ...|-+--+.+|+.| +|+++..
T Consensus 601 Dm~Vdp~~k-~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSg-iY~atSc 660 (1080)
T KOG1408|consen 601 DMAVDPTSK-LVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSG-IYLATSC 660 (1080)
T ss_pred EeeeCCCcc-eEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECCCc-cEEEEee
Confidence 466777766 44444455568888886543 3334442 233556678889999 4555543
No 268
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.78 E-value=18 Score=31.69 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce-eEEcC
Q 017371 197 PHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAP 274 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~-i~~d~ 274 (372)
++-.++.+|..||++..-. .....-|.+.|..+.. +.++.+.+..+..++..........++.+. -|+ +.+|-
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea----~D~V~Si~v 153 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA----KDGVSSIDV 153 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh----cCceeEEEe
Confidence 4556888888888865543 3355678899987665 888888888888888765544443343322 244 34566
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-
Q 017371 275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV- 352 (372)
Q Consensus 275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~- 352 (372)
.++..|+... .|.+-.|| ..|+...-| -|. .++++.+.
T Consensus 154 ~~heIvaGS~----------------------------------DGtvRtydiR~G~l~sDy---~g~---pit~vs~s~ 193 (307)
T KOG0316|consen 154 AEHEIVAGSV----------------------------------DGTVRTYDIRKGTLSSDY---FGH---PITSVSFSK 193 (307)
T ss_pred cccEEEeecc----------------------------------CCcEEEEEeecceeehhh---cCC---cceeEEecC
Confidence 6776676655 46777777 456664322 232 46667664
Q ss_pred C-CEEEEEeCCCCeEEEE
Q 017371 353 D-NHLYVISLTSNFIGKV 369 (372)
Q Consensus 353 ~-g~L~igs~~~~~i~~~ 369 (372)
+ +.+.++++. ..|.-|
T Consensus 194 d~nc~La~~l~-stlrLl 210 (307)
T KOG0316|consen 194 DGNCSLASSLD-STLRLL 210 (307)
T ss_pred CCCEEEEeecc-ceeeec
Confidence 3 445555543 444433
No 269
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=87.51 E-value=3.2 Score=38.20 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
++-.|-.++..|+++.....+ ...|||--.-...+.|+.+.++.|..+++.-
T Consensus 338 gDRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred CCceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccc
Confidence 455666777777776555443 3457775555556999999999888888754
No 270
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.23 E-value=1.4 Score=45.72 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=50.3
Q ss_pred CccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371 81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 144 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~ 144 (372)
=.+++.+.+|+|.+|+.+|.|.-|+ -| +.++..+..|.|+.||.+..||+..+++...-|+.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 3468888999999999999999999 44 3444445668887799999999977777666677766
No 271
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.10 E-value=11 Score=35.12 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=50.9
Q ss_pred cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEE-c-CCC--cEEEeeecCCcccccccceEE
Q 017371 97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKV-S-EDG--VENFLSYVNGSKLRFANDVVE 168 (372)
Q Consensus 97 ~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~-~-~~g--~~~l~~~~~~~~~~~~~~l~~ 168 (372)
..|.|+.|| +-+ +..+. ....+++.|+++++|.+..+...+| |.|+ . ++| +..+... ...-.+..|+|
T Consensus 151 t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG---~~~~~IySL~F 226 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG---TYPVSIYSLSF 226 (391)
T ss_pred CCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC---ceeeEEEEEEE
Confidence 468888888 222 23333 3334555899999999988877766 4444 4 777 4444332 22346678999
Q ss_pred ccCCcEEEEeC
Q 017371 169 ASDGSLYFTVS 179 (372)
Q Consensus 169 d~dG~i~vtd~ 179 (372)
++++.+..+.+
T Consensus 227 s~ds~~L~~sS 237 (391)
T KOG2110|consen 227 SPDSQFLAASS 237 (391)
T ss_pred CCCCCeEEEec
Confidence 99999666544
No 272
>PHA03098 kelch-like protein; Provisional
Probab=86.81 E-value=36 Score=34.00 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=70.3
Q ss_pred CCcEEEEe-cC------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCC------cEEEEc-CCC-cEE
Q 017371 89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-VEN 150 (372)
Q Consensus 89 ~G~l~v~~-~~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~------gv~~~~-~~g-~~~ 150 (372)
++.||+.. .+ ..+++++ ++++....... .+...+++. -+|.||+..... -+.+++ .++ .+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45677643 11 2467777 55665443211 111113333 368899875432 256677 344 443
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-e-EEEec
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-G-VALSR 228 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-g-i~~~~ 228 (372)
+... +..+ .-... ..-+|+||+.-.... .......+++||+.+++++.+.. ...+. + .+..-
T Consensus 373 ~~~l-p~~r--~~~~~-~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~ 436 (534)
T PHA03098 373 EPPL-IFPR--YNPCV-VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYH 436 (534)
T ss_pred CCCc-CcCC--ccceE-EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceEEEE
Confidence 3221 1111 11122 335789999521100 01123568999999888876542 22211 1 12222
Q ss_pred CCCEEEEEeCCC--------CeEEEEEccCC
Q 017371 229 DEDYVVVCESWK--------FRCRKYWLKGE 251 (372)
Q Consensus 229 dg~~l~v~~~~~--------~~i~~~~~~g~ 251 (372)
+ +.+|+..... ..+++|++...
T Consensus 437 ~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 437 D-GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred C-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 3 4588865321 23888887643
No 273
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=86.69 E-value=30 Score=35.75 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=77.9
Q ss_pred cEEEcCCCcEE-EEecCCeEEEEe-CC---c---eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE-Ec-CCC-cEEE
Q 017371 83 DASMDKNGVIY-TATRDGWIKRLQ-DG---T---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG-VENF 151 (372)
Q Consensus 83 ~i~~d~~G~l~-v~~~~g~i~~~~-~g---~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~-~~-~~g-~~~l 151 (372)
+.++.++++.. .++.+|+|..|. -| . .+.+.--..... ++++..+|....+....|++. +. +++ .+.|
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL 288 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL 288 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCcccc
Confidence 45666777544 445889998887 22 1 222222223455 999999996444433445444 44 455 4433
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC------------cc
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FY 219 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~------------~~ 219 (372)
+. .. ..+-++.+.+|+..|-.-. .+..|..+...+-+.+....+ -.
T Consensus 289 PR-Lg----s~I~~i~vS~ds~~~sl~~-----------------~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 289 PR-LG----SPILHIVVSPDSDLYSLVL-----------------EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred cc-cC----CeeEEEEEcCCCCeEEEEe-----------------cCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 22 12 1345788889998776422 234454444322222222222 23
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.+.+++++|--+.+. -+...+.|..|++-.
T Consensus 347 l~t~~~idpr~~~~v-ln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLV-LNGHPGHVQFYDLYT 376 (792)
T ss_pred cceeEEEcCCCCcee-ecCCCceEEEEeccc
Confidence 456788888544333 333456788888754
No 274
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.60 E-value=17 Score=34.91 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCccEEEcCCC-cEEEEecCCeEEEEe--CCc
Q 017371 79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--DGT 108 (372)
Q Consensus 79 ~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~ 108 (372)
+||-.+-...+| .|.+|...|-|-.+| ++.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~ 162 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK 162 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccce
Confidence 588899999888 577777888898888 554
No 275
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.55 E-value=31 Score=33.07 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=69.6
Q ss_pred CeEEcCCCC-EEEEeCCCcEEEEc-CCC--cE-EEeee----cCCcccc--------cccceEEccCCcEEEEeCCCCCC
Q 017371 122 GLTSTKEGH-LIICDNANGLHKVS-EDG--VE-NFLSY----VNGSKLR--------FANDVVEASDGSLYFTVSSSKYL 184 (372)
Q Consensus 122 gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~-~l~~~----~~~~~~~--------~~~~l~~d~dG~i~vtd~~~~~~ 184 (372)
++++.+|+. .|-+....-|.+++ .+| .+ .+... ..+.+.. ..-.+++.+||+..++
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat------- 219 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT------- 219 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe-------
Confidence 888887774 55554444477776 555 21 22111 0111111 2336888999996664
Q ss_pred CcccccccccccCCCeEEEEeCCCCeEEEEeCCccC-cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC
Q 017371 185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL 263 (372)
Q Consensus 185 ~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 263 (372)
+.....|..++.+|.+-.....+... -.+++|-.....||.+.. +..|..+.++. .. +.+.+
T Consensus 220 ----------gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-Drsvkvw~~~~--~s----~vetl 282 (479)
T KOG0299|consen 220 ----------GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-DRSVKVWSIDQ--LS----YVETL 282 (479)
T ss_pred ----------cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-CCceEEEehhH--hH----HHHHH
Confidence 22344566778877765544444333 346777766667887764 44466555542 12 23344
Q ss_pred CCCCceeE-EcC
Q 017371 264 PGAPDNIN-LAP 274 (372)
Q Consensus 264 ~g~p~~i~-~d~ 274 (372)
.|.++++. +|.
T Consensus 283 yGHqd~v~~Ida 294 (479)
T KOG0299|consen 283 YGHQDGVLGIDA 294 (479)
T ss_pred hCCccceeeech
Confidence 45566643 443
No 276
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=86.40 E-value=21 Score=30.97 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=15.9
Q ss_pred eEEEecCCCEEEEEeCCCCeEEE
Q 017371 223 GVALSRDEDYVVVCESWKFRCRK 245 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~ 245 (372)
-.+|+|+|. |+.+.+++..|..
T Consensus 94 c~~ws~~ge-liatgsndk~ik~ 115 (350)
T KOG0641|consen 94 CTAWSPCGE-LIATGSNDKTIKV 115 (350)
T ss_pred EEEecCccC-eEEecCCCceEEE
Confidence 478999997 8877776654443
No 277
>PRK10115 protease 2; Provisional
Probab=86.37 E-value=44 Score=34.67 Aligned_cols=53 Identities=4% Similarity=-0.109 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCCCeEE-EEeCCccCcceEEEecCCCEEEEEeCC-----CCeEEEEEccCC
Q 017371 197 PHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYWLKGE 251 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~g~ 251 (372)
..-.|+.+|..+|+.. ....+.. ..++|++|++.+|++... ...|+++++.+.
T Consensus 151 E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 151 RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 3446888898877521 1112222 458999999888887432 257888887654
No 278
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.26 E-value=0.61 Score=28.24 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCceeEEcCCCCEEEEEec
Q 017371 266 APDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 266 ~p~~i~~d~~G~lwva~~~ 284 (372)
.+.+|++|++||+||+-..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 3789999999999999765
No 279
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=86.07 E-value=35 Score=36.55 Aligned_cols=177 Identities=17% Similarity=0.207 Sum_probs=102.5
Q ss_pred CCccEEEc-CCCcEEEEe-cCCeEEEEe-CCceEE--EEecCCCcccCeEEc-CCCCEEEEeCCCcEEE-EcCCC-c-EE
Q 017371 80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGTWVN--WKFIDSQTLVGLTST-KEGHLIICDNANGLHK-VSEDG-V-EN 150 (372)
Q Consensus 80 ~p~~i~~d-~~G~l~v~~-~~g~i~~~~-~g~~~~--~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~-~~~~g-~-~~ 150 (372)
.+..+.++ .++.+|..+ ....|.+.. ++.... .....-.+. +++.| -.+++|.+|...-... .+.+| . .+
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~v 516 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKV 516 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeE
Confidence 33344444 355788887 566777776 443322 233344567 99998 4557888887643333 33455 3 33
Q ss_pred EeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEec
Q 017371 151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR 228 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~ 228 (372)
+.... ...+..+++++ .|.+|.+|.+. ..++-|-..+...... +..+...|+|++++-
T Consensus 517 l~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~ 576 (877)
T KOG1215|consen 517 LVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDY 576 (877)
T ss_pred EEecC----CCCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence 33221 13566888987 46778776531 1134444443223333 334478899999998
Q ss_pred CCCEEEEEeCCCC-eEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371 229 DEDYVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 280 (372)
Q Consensus 229 dg~~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 280 (372)
..+.+|+.+.-.. .+.....+|.... .........|.++.+-.+.-+|.
T Consensus 577 ~~~~~yw~d~~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~~~~iyw~ 626 (877)
T KOG1215|consen 577 ETDRLYWADAKLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVFEDYIYWT 626 (877)
T ss_pred ecceeEEEcccCCcceeeeecCCCceE---EeccccCCCceEEEEecceeEEe
Confidence 7788999998777 6888888764322 11112223466777655544444
No 280
>PHA02790 Kelch-like protein; Provisional
Probab=86.05 E-value=37 Score=33.48 Aligned_cols=50 Identities=6% Similarity=-0.058 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCeEEEEeCCccCcc-eEE-EecCCCEEEEEeCCC---CeEEEEEccC
Q 017371 199 GQLLKYDPSSNITTLVADGFYFAN-GVA-LSRDEDYVVVCESWK---FRCRKYWLKG 250 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~~~~~~~~-gi~-~~~dg~~l~v~~~~~---~~i~~~~~~g 250 (372)
..+.+||+.+++++.+.. +..+. +.+ ..-+| .+|+..... ..+.+|++..
T Consensus 331 ~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS-LLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CceEEEECCCCeEEECCC-CCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCC
Confidence 458899998887766543 33222 222 22234 588875322 3477787654
No 281
>PHA03098 kelch-like protein; Provisional
Probab=85.86 E-value=24 Score=35.29 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCcEEEEe-cC-----CeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC-------CcEEEEc-CCC-cEE
Q 017371 89 NGVIYTAT-RD-----GWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VEN 150 (372)
Q Consensus 89 ~G~l~v~~-~~-----g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~-~~g-~~~ 150 (372)
+|.||+-. .+ ..+.+++ +++|+..... ..+...+.+. -+|.|||.... ..+.++| .++ .+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 56777643 11 2356666 4555543321 1111102222 36889987541 2367777 444 444
Q ss_pred EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEe
Q 017371 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALS 227 (372)
Q Consensus 151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~ 227 (372)
+.. .+... .- .-++.-+|+||+.-..... ........+++||+.+++++.+.. +..|. +++.
T Consensus 421 ~~~-~p~~r--~~-~~~~~~~~~iyv~GG~~~~---------~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~- 485 (534)
T PHA03098 421 GSP-LPISH--YG-GCAIYHDGKIYVIGGISYI---------DNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCI- 485 (534)
T ss_pred cCC-CCccc--cC-ceEEEECCEEEEECCccCC---------CCCcccceEEEecCCCCceeeCCC-CCcccccceEEE-
Confidence 322 11111 11 1233356889985321000 000012349999999888877542 22221 2222
Q ss_pred cCCCEEEEEeCC-----CCeEEEEEccC
Q 017371 228 RDEDYVVVCESW-----KFRCRKYWLKG 250 (372)
Q Consensus 228 ~dg~~l~v~~~~-----~~~i~~~~~~g 250 (372)
-++ .+|+.... .+.+++|+++.
T Consensus 486 ~~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 486 FNN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ECC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 233 47766432 13466666543
No 282
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=85.75 E-value=17 Score=36.45 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=71.3
Q ss_pred EEEcC--CCcEEEEecCCeEEEEe---CCc------eEEEEecC-CCcccCeEEcCC--CCEEEEeCCCcEEEEc-CCC-
Q 017371 84 ASMDK--NGVIYTATRDGWIKRLQ---DGT------WVNWKFID-SQTLVGLTSTKE--GHLIICDNANGLHKVS-EDG- 147 (372)
Q Consensus 84 i~~d~--~G~l~v~~~~g~i~~~~---~g~------~~~~~~~~-~~p~~gl~~d~d--G~l~v~~~~~gv~~~~-~~g- 147 (372)
+..|+ +.+|-+++.+|+|..|. +|- .+.+.... .... .|.|.|- .-|.++..+..|-.+| .++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhh
Confidence 44553 34788888888775554 331 11222222 2234 6666642 2344444445566677 444
Q ss_pred -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-----
Q 017371 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----- 221 (372)
Q Consensus 148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~----- 221 (372)
...+... ...+.+++..++|+...+. ..+|+|..|+|..++..+. .+ ..|
T Consensus 712 ~~~~l~gH-----tdqIf~~AWSpdGr~~AtV-----------------cKDg~~rVy~Prs~e~pv~-Eg-~gpvgtRg 767 (1012)
T KOG1445|consen 712 LYSRLVGH-----TDQIFGIAWSPDGRRIATV-----------------CKDGTLRVYEPRSREQPVY-EG-KGPVGTRG 767 (1012)
T ss_pred hhheeccC-----cCceeEEEECCCCcceeee-----------------ecCceEEEeCCCCCCCccc-cC-CCCccCcc
Confidence 2212111 1256689999999877653 2688999999986654332 21 222
Q ss_pred ceEEEecCCCEEEEEeC
Q 017371 222 NGVALSRDEDYVVVCES 238 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~ 238 (372)
..|.|.=||+.++++..
T Consensus 768 ARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGF 784 (1012)
T ss_pred eeEEEEecCcEEEEecc
Confidence 23556667776666543
No 283
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.65 E-value=56 Score=35.13 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=98.1
Q ss_pred CcccCeEEc---CCCCEEEEeCCCcEEEEcCCCcEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccc
Q 017371 118 QTLVGLTST---KEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 118 ~p~~gl~~d---~dG~l~v~~~~~gv~~~~~~g~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~ 193 (372)
+-. |+.+| -.|.|+++..-+-|..+|.+. +......+......+..+.-+. .|++.++
T Consensus 1165 r~~-~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-E~~~~diP~~s~t~vTaLS~~~~~gn~i~A---------------- 1226 (1387)
T KOG1517|consen 1165 RGT-GLVVDWQQQSGHLLVTGDVRSIRIWDAHK-EQVVADIPYGSSTLVTALSADLVHGNIIAA---------------- 1226 (1387)
T ss_pred CCC-CeeeehhhhCCeEEecCCeeEEEEEeccc-ceeEeecccCCCccceeecccccCCceEEE----------------
Confidence 334 66666 467788775433345555222 2222222222222333444442 3566664
Q ss_pred cccCCCeEEEEeCCCCeE---EEEeCCccC---cceEEEecCCCEEEEEeCCCCeEEEEEccCC-CCcceeeeccCCCC-
Q 017371 194 EGKPHGQLLKYDPSSNIT---TLVADGFYF---ANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPG- 265 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~---~~~~~~~~~---~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~g- 265 (372)
+-.+|.|..||-..-.. ......... -.++.+-+.|-.-+|+.+.++.|..+++..+ +.........-..|
T Consensus 1227 -GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1227 -GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred -eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 33567777776321111 001111111 2445565655445677778888999998763 11111111111112
Q ss_pred CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCC---CCe
Q 017371 266 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT---GQL 342 (372)
Q Consensus 266 ~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~---g~~ 342 (372)
-...+.+-++-.+..+..+ ..+..|+-.|+.+..+.... |..
T Consensus 1306 ~lTal~VH~hapiiAsGs~-----------------------------------q~ikIy~~~G~~l~~~k~n~~F~~q~ 1350 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-----------------------------------QLIKIYSLSGEQLNIIKYNPGFMGQR 1350 (1387)
T ss_pred cceeeeeccCCCeeeecCc-----------------------------------ceEEEEecChhhhcccccCcccccCc
Confidence 1344566665555544432 35666677776655443222 333
Q ss_pred eccceeeEEECCE-EEEEeCCCCeEEEEe
Q 017371 343 MSFVTSGLQVDNH-LYVISLTSNFIGKVQ 370 (372)
Q Consensus 343 ~~~~t~~~~~~g~-L~igs~~~~~i~~~~ 370 (372)
...+++..++..+ +..++...++|.++.
T Consensus 1351 ~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1351 IGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CCCcceeeecchhHhhhhccCCceEEEee
Confidence 3456788887643 444457778887765
No 284
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=85.54 E-value=35 Score=34.06 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred eEEEEEccCCCCcceeeeccCCCC-CCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371 242 RCRKYWLKGERKGKLETFAENLPG-APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 319 (372)
Q Consensus 242 ~i~~~~~~g~~~~~~~~~~~~~~g-~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~ 319 (372)
.|++|.+++.+..-... ...+| ..+.+++|. +|+|=|++..... ++.......
T Consensus 249 ~I~kf~~~~~~~~y~~s--g~V~G~llnqFsmdE~~G~LRvaTT~~~~-----------------------~~~~~~~s~ 303 (521)
T PF09826_consen 249 TIYKFALDGGKIEYVGS--GSVPGYLLNQFSMDEYDGYLRVATTSGNW-----------------------WWDSEDTSS 303 (521)
T ss_pred EEEEEEccCCcEEEEEE--EEECcEEcccccEeccCCEEEEEEecCcc-----------------------cccCCCCce
Confidence 47777776543221111 11334 345677886 5577777754100 000113446
Q ss_pred eEEEEECCCCcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCC-CeEEEEeCC
Q 017371 320 AHLIHVAEDGTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTS-NFIGKVQLS 372 (372)
Q Consensus 320 ~~v~~~~~~g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~-~~i~~~~~~ 372 (372)
+.|+.+|.+-+.+..+.+- .|. .+.++.+.+++.|+-++.. +-+-++||+
T Consensus 304 N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 304 NNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred EEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 7899999887887776542 222 5899999999999999877 777777764
No 285
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=85.43 E-value=2.6 Score=25.48 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC
Q 017371 77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG 107 (372)
Q Consensus 77 ~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g 107 (372)
.+..|.++++|+ ++.||+++ ..+.|.+.+ +|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 367888888886 45788888 456677766 44
No 286
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.30 E-value=48 Score=34.05 Aligned_cols=175 Identities=12% Similarity=0.053 Sum_probs=88.3
Q ss_pred CccEEEcCCC-cEEEEecCCeEEEEe-CCceEEEEec-C-CCcccCeEEcCCCCEEEEeCC-CcEEEEc---CCC-cEEE
Q 017371 81 PEDASMDKNG-VIYTATRDGWIKRLQ-DGTWVNWKFI-D-SQTLVGLTSTKEGHLIICDNA-NGLHKVS---EDG-VENF 151 (372)
Q Consensus 81 p~~i~~d~~G-~l~v~~~~g~i~~~~-~g~~~~~~~~-~-~~p~~gl~~d~dG~l~v~~~~-~gv~~~~---~~g-~~~l 151 (372)
..++...++. .|-+|-.||.|..|+ ..+...+... . .... -|.+|..|..+++... .-+..+| +.| .+.-
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt-~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~ 146 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT-TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLR 146 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE-EEEEcccCceEeecCCCccEEEEEeccceeeEEee
Confidence 3445444444 345666888777777 2221111111 1 1223 5678888876666443 3467777 344 3321
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeCCccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~~~~~~~gi~~~~dg 230 (372)
.+.. .+...-+-.+.++.++.+ .++.+-.+|.++... ++....-..-.++++++
T Consensus 147 GHkd------~iT~~~F~~~~~~lvS~s-----------------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-- 201 (888)
T KOG0306|consen 147 GHKD------SITQALFLNGDSFLVSVS-----------------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-- 201 (888)
T ss_pred cchH------HHhHHhccCCCeEEEEec-----------------cCceEEEEecccceeeeEEecccceEEEEEEec--
Confidence 1110 111222223445666543 345555666665442 22333333345677775
Q ss_pred CEEEEEeCCCCeEEEEEcc--CC--------CCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 231 DYVVVCESWKFRCRKYWLK--GE--------RKGKLETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~--g~--------~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
+ +.++...+..+..|.+. .. +......+..+..+.+.++..|.++++.+..
T Consensus 202 ~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~ 262 (888)
T KOG0306|consen 202 K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ 262 (888)
T ss_pred c-eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEe
Confidence 3 55555555556555552 11 1122234444455678899999999865554
No 287
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.02 E-value=45 Score=33.56 Aligned_cols=167 Identities=18% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCCc-EEEEecCCeEEEEe----CCceEE-----EEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc--CCC---cEEE
Q 017371 88 KNGV-IYTATRDGWIKRLQ----DGTWVN-----WKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS--EDG---VENF 151 (372)
Q Consensus 88 ~~G~-l~v~~~~g~i~~~~----~g~~~~-----~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~--~~g---~~~l 151 (372)
++|+ ||.|..||.|..++ .++.+. +..-....+ .++...+|+ |.-+..+..|..++ .++ ...+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 3555 88888999888887 222111 001111233 566666674 44444445677776 222 2222
Q ss_pred eeecCCcccccccceEE-ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-------Ccc-Cc-
Q 017371 152 LSYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------GFY-FA- 221 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~-d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-------~~~-~~- 221 (372)
... --++..++. .++..+.++ +.-+++|+.+|..++..+.++. .+. .|
T Consensus 114 r~H-----~DYVkcla~~ak~~~lvaS-----------------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 114 RTH-----KDYVKCLAYIAKNNELVAS-----------------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred hcc-----cchheeeeecccCceeEEe-----------------cCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 111 124455666 455555554 2245567777766553212111 111 11
Q ss_pred ---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce---eEEcCCCCEEEEEec
Q 017371 222 ---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDGTFWIAIIK 284 (372)
Q Consensus 222 ---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~---i~~d~~G~lwva~~~ 284 (372)
..++..+.| +++++......|..|++...+ + .+ .+.|..+| +.++.||+-.++..+
T Consensus 172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--k---im-kLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--K---IM-KLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred cceeeeecCCcc-eEEEecCcccceEEecccccc--c---ee-eeeccccceEEEEEcCCCCeEeecCC
Confidence 234555445 477766555555555554321 1 11 12244455 557889965555443
No 288
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=37 Score=32.09 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=30.9
Q ss_pred CeEEcCCCCEEEEeCCCcEEEE-c-CCCcEEEeeecCCcccccccceEEccCCcEEEEeC
Q 017371 122 GLTSTKEGHLIICDNANGLHKV-S-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~-~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~ 179 (372)
-+++..+|.+.-+....|.+|+ + ++-...+. .......+++|++.+||++.++-.
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig 205 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIG 205 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEec
Confidence 4667777765554433454443 3 33211110 111235788999999999887644
No 289
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=84.40 E-value=38 Score=32.15 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=22.7
Q ss_pred CeEEEEeCCCCeEEEEeCCccC-c-ceEEEecCCCEEEEEe
Q 017371 199 GQLLKYDPSSNITTLVADGFYF-A-NGVALSRDEDYVVVCE 237 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~~~~~~-~-~gi~~~~dg~~l~v~~ 237 (372)
..|++||+.+.+++.+.. +.. + .+.++..-++.+|+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEe
Confidence 569999999888876543 222 1 2333322234588765
No 290
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=84.20 E-value=29 Score=30.58 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=63.1
Q ss_pred CcccCeEEc-CCCCEEEEeCCCcEEEEc-CCC-cEEEe-eecCCcccccccceEEccC-CcEEEEeCCCCCCCccccccc
Q 017371 118 QTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFL-SYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDI 192 (372)
Q Consensus 118 ~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~g-~~~l~-~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~ 192 (372)
... ||.+. .+|.||-.....+++.++ .+| .+.+. ............++.|.|- .+|-|-
T Consensus 28 ~l~-GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv--------------- 91 (236)
T PF14339_consen 28 SLV-GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV--------------- 91 (236)
T ss_pred eEE-EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence 334 77777 467888776667799999 677 44442 1111111112345556553 466553
Q ss_pred ccccCCCeEEEEeCCCCeEEEEeCCccC----------cc--eEEEe-----cC-CCEEEEEeCCCCeEEEEE
Q 017371 193 LEGKPHGQLLKYDPSSNITTLVADGFYF----------AN--GVALS-----RD-EDYVVVCESWKFRCRKYW 247 (372)
Q Consensus 193 ~~~~~~g~v~~~d~~t~~~~~~~~~~~~----------~~--gi~~~-----~d-g~~l~v~~~~~~~i~~~~ 247 (372)
...|.-+|+++++|.+...-..+.. |. +.++. +. ...||-.|...+.+++-.
T Consensus 92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred ---ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 2356788999988875433222222 21 22332 22 467888888888887764
No 291
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.01 E-value=11 Score=40.12 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=63.6
Q ss_pred CcEEEEecCCeEEEEe-C-----CceEEE---EecCCCcccCeEEcCCCC-EEEEeCCC-cEEEEcCCC-cEEEeeecCC
Q 017371 90 GVIYTATRDGWIKRLQ-D-----GTWVNW---KFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVSEDG-VENFLSYVNG 157 (372)
Q Consensus 90 G~l~v~~~~g~i~~~~-~-----g~~~~~---~~~~~~p~~gl~~d~dG~-l~v~~~~~-gv~~~~~~g-~~~l~~~~~~ 157 (372)
|-|--|..||.|..|+ + ++...+ ..-.|... ||-|.+.+. +....... .|+.+|-+. .+.... .+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~ 157 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GS 157 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CC
Confidence 3344444788888887 2 122211 22234556 888887765 44443333 377887222 111100 01
Q ss_pred c-ccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc---cCcceEEEecCCCE
Q 017371 158 S-KLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDY 232 (372)
Q Consensus 158 ~-~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~---~~~~gi~~~~dg~~ 232 (372)
. ....+..|+.... -+|+- .+..+|+...+|...++..+-.... ..-++++|+|+...
T Consensus 158 ~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred CCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 0 0111222222211 12322 2345677888887633221111111 12348999999876
Q ss_pred EEEEeCCCCe
Q 017371 233 VVVCESWKFR 242 (372)
Q Consensus 233 l~v~~~~~~~ 242 (372)
-+++.+..++
T Consensus 221 ql~~As~dd~ 230 (1049)
T KOG0307|consen 221 QLLVASGDDS 230 (1049)
T ss_pred eeeeecCCCC
Confidence 6666665554
No 292
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=82.83 E-value=5.7 Score=36.62 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=29.2
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEe
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAII 283 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~ 283 (372)
.-|-+.++ .+ ++|+.+++..|..++..+. .|...+.|.-.||+.-. .|++-|+..
T Consensus 322 aVNvVdfd--~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 322 AVNVVDFD--DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred heeeeccc--cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecC
Confidence 34556565 33 6666666655655554332 34444555566776543 445555543
No 293
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=82.46 E-value=53 Score=32.40 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=48.2
Q ss_pred cEEEEecCCeEEEEe-CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccce
Q 017371 91 VIYTATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDV 166 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~-~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l 166 (372)
.+.+.+.||++..+. .|+++.-.. -.+-.. .=.+.+||.=.++....|+.++- ++| ++....... ..+..+
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~----~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNE----ESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcC----ceeEEE
Confidence 566777899888888 777664322 122223 44566888766665567777766 777 432211111 245567
Q ss_pred EEccCC-cEEEE
Q 017371 167 VEASDG-SLYFT 177 (372)
Q Consensus 167 ~~d~dG-~i~vt 177 (372)
+.+|+. ++.++
T Consensus 152 ~W~p~S~~vl~c 163 (737)
T KOG1524|consen 152 RWAPNSNSIVFC 163 (737)
T ss_pred EECCCCCceEEe
Confidence 777764 56665
No 294
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.40 E-value=1.1 Score=27.02 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.5
Q ss_pred ccccceEEccCCcEEEEe
Q 017371 161 RFANDVVEASDGSLYFTV 178 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd 178 (372)
..+++|++|++|+||++=
T Consensus 13 ~~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eeEEEEEECCCCCEEEEE
Confidence 357899999999999973
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.70 E-value=12 Score=35.02 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=31.3
Q ss_pred CeEEEEeC---CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 199 GQLLKYDP---SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 199 g~v~~~d~---~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
|-+|.+|. ..+..+.++..+..-..+++++|+++++.+|. ...|+..+..+
T Consensus 129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa 182 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPA 182 (390)
T ss_pred CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecCc
Confidence 44555543 21444444445555668999999998888875 44566655543
No 296
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.95 E-value=52 Score=31.27 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-C-C-CCCCceeEEcC
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N-L-PGAPDNINLAP 274 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~-~-~g~p~~i~~d~ 274 (372)
+..|..+|..+............-..+.++.+|..+..+ +..+.+-.+++.+.... ..|.. . . ..--.-..+.|
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~--~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIR--QTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEE--EEeeccccccccccceeEECC
Confidence 455777775544444433333445678888999888877 45667888887653211 12210 0 0 00123467788
Q ss_pred CCCEEEEEec
Q 017371 275 DGTFWIAIIK 284 (372)
Q Consensus 275 ~G~lwva~~~ 284 (372)
+|.+-.+...
T Consensus 398 d~~YvaAGS~ 407 (459)
T KOG0288|consen 398 DGSYVAAGSA 407 (459)
T ss_pred CCceeeeccC
Confidence 8876666555
No 297
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.52 E-value=3.9 Score=23.23 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCeEEEEe--CCce
Q 017371 88 KNGVIYTATRDGWIKRLQ--DGTW 109 (372)
Q Consensus 88 ~~G~l~v~~~~g~i~~~~--~g~~ 109 (372)
.+|.+|+++.+|.++.++ +|+.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcE
Confidence 356888888888888888 5554
No 298
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.15 E-value=31 Score=34.89 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=44.6
Q ss_pred CCCCCCCccEEEcCCCcEEEEecCCeEEEEe-CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEcC
Q 017371 75 EGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSE 145 (372)
Q Consensus 75 ~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~~ 145 (372)
.|...-.+++++-+++.+.-++.||-|..|+ +|+. .+.....+..+ .+....++.+.|+....+ +..++.
T Consensus 176 ~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeec
Confidence 3444557788888887777777899888888 6653 33333334556 777555666777765544 444443
No 299
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=78.91 E-value=86 Score=32.59 Aligned_cols=174 Identities=9% Similarity=0.036 Sum_probs=92.4
Q ss_pred CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEE-ec----CCCcccCeEEcCCCCEEEEeCC-CcEEEEc--C-CC--
Q 017371 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK-FI----DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--E-DG-- 147 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~-~~----~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~--~-~g-- 147 (372)
|.+|...+.|.......+-.++.+. .+. +... .. ...+....++.+.++...+... ..|+.+. . ++
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 7888887777554444444466665 222 1110 00 0011115667777775554332 2355544 2 12
Q ss_pred -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEE
Q 017371 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVA 225 (372)
Q Consensus 148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~ 225 (372)
--.+.+.. ....+.+++..+|....+ +...+-+.+...+|++ +.+...+..| -++.
T Consensus 242 ~t~t~lHWH----~~~V~~L~fS~~G~~LlS-----------------GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~ 299 (792)
T KOG1963|consen 242 ETCTLLHWH----HDEVNSLSFSSDGAYLLS-----------------GGREGVLVLWQLETGK-KQFLPRLGSPILHIV 299 (792)
T ss_pred ccceEEEec----ccccceeEEecCCceEee-----------------cccceEEEEEeecCCC-cccccccCCeeEEEE
Confidence 11111111 124678899999965554 3344556667777777 4455555554 4788
Q ss_pred EecCCCEEEEEeCCCCeEEEEEccCCCCc----ceeee----ccCCCCCCceeEEcCCCCE
Q 017371 226 LSRDEDYVVVCESWKFRCRKYWLKGERKG----KLETF----AENLPGAPDNINLAPDGTF 278 (372)
Q Consensus 226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~~~----~~~~~----~~~~~g~p~~i~~d~~G~l 278 (372)
++||++ +|-.-..++.|..+....-... ..+.. .....+++.++++|+.-+.
T Consensus 300 vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 300 VSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred EcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 999997 6666666788888765332111 11111 1113456778899984433
No 300
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.87 E-value=57 Score=30.50 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=29.1
Q ss_pred EEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCCceeEEcCCCCEEEEEec
Q 017371 232 YVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
....+.+.+..|..+++..+ . -.+. ........++++.+.|.+.+++..
T Consensus 305 ~~l~s~SrDktIk~wdv~tg---~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTG---M-CLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred cEEEeecccceEEEEeccCC---e-EEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 45555554544555555433 1 1111 123335788999999999999887
No 301
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.58 E-value=3.6 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.5
Q ss_pred cEEEcCCCcEEEEecCCeEEEEe
Q 017371 83 DASMDKNGVIYTATRDGWIKRLQ 105 (372)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~i~~~~ 105 (372)
+++++ +|.+|+++.+|.|+.+|
T Consensus 16 ~~~v~-~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTGDGNLYALD 37 (40)
T ss_dssp --EEC-TSEEEEE-TTSEEEEEE
T ss_pred CCEEE-CCEEEEEcCCCEEEEEe
Confidence 44665 68999999999999987
No 302
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=78.04 E-value=47 Score=31.54 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=81.9
Q ss_pred CCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEe-cCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cEEE
Q 017371 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENF 151 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~~l 151 (372)
.-+++++.++..-+++. .||.|..++ ..+-+.... .+=.+. .+...|.-.|.++ ..++-|..+| ++| +-.+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 45678888877666665 678777777 333222222 222345 6777776555444 3334345566 566 3322
Q ss_pred eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeCCccCcceEEEecCC
Q 017371 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANGVALSRDE 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~~~~~~~gi~~~~dg 230 (372)
..- .+.+-.+.+.++|+...|-+ .+..+-.||..+ +++..+-..-.....++++|=.
T Consensus 261 h~H-----KntVl~~~f~~n~N~Llt~s-----------------kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 261 HGH-----KNTVLAVKFNPNGNWLLTGS-----------------KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred hhc-----cceEEEEEEcCCCCeeEEcc-----------------CCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 111 12445677888887555422 344455566542 1222221122344567788876
Q ss_pred CEEEEEeCCCCeEEEEEcc
Q 017371 231 DYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~ 249 (372)
..|+.+...++.|..+.+.
T Consensus 319 ~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccceeeccCCCceEEEecc
Confidence 6788888777778777664
No 303
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.71 E-value=38 Score=34.09 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE
Q 017371 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK 142 (372)
Q Consensus 76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~ 142 (372)
|+...--++|..+.|.+.++. -.+-|..|| .+ ++..+..-..... .|.+++||+-.++....|..+
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEE
Confidence 444555568888888888776 344455566 22 3333332223445 677788886555544445433
No 304
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=77.69 E-value=7.5 Score=37.94 Aligned_cols=68 Identities=24% Similarity=0.114 Sum_probs=38.3
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCEEEEEeCCC
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
.+|.+++.+||+...+.+ .+|.|..+|-++.++.-++. -+..---++|+|||+++.. .-.+
T Consensus 292 ~in~f~FS~DG~~LA~VS-----------------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt-GGED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-----------------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT-GGED 353 (636)
T ss_pred cccceeEcCCCceEEEEe-----------------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe-cCCc
Confidence 677888888888666544 45666666665444322211 1112235789999985544 3334
Q ss_pred CeEEEEE
Q 017371 241 FRCRKYW 247 (372)
Q Consensus 241 ~~i~~~~ 247 (372)
+-|.+|.
T Consensus 354 DLVtVwS 360 (636)
T KOG2394|consen 354 DLVTVWS 360 (636)
T ss_pred ceEEEEE
Confidence 4344443
No 305
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=77.41 E-value=53 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=21.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
...|+..+.....||+++. +-.||+|..+
T Consensus 206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeec-cceeeecccC
Confidence 3467777776678999985 5579999765
No 306
>smart00284 OLF Olfactomedin-like domains.
Probab=77.18 E-value=54 Score=29.32 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=77.9
Q ss_pred CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEE--ecC------------CCcccCeEEcCCCCEEEE---eCC
Q 017371 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK--FID------------SQTLVGLTSTKEGHLIIC---DNA 137 (372)
Q Consensus 78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~--~~~------------~~p~~gl~~d~dG~l~v~---~~~ 137 (372)
..|...++. +|.||.-- ....|.|++ .+.+.... +.. ..-+ .+++|.. .|||. ...
T Consensus 74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~-GLWvIYat~~~ 149 (255)
T smart00284 74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDEN-GLWVIYATEQN 149 (255)
T ss_pred cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCC-ceEEEEeccCC
Confidence 566767776 58899865 456799999 44443222 111 1124 6777754 47776 223
Q ss_pred Cc---EEEEcCCCc---EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe-EEEEeCCCCe
Q 017371 138 NG---LHKVSEDGV---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ-LLKYDPSSNI 210 (372)
Q Consensus 138 ~g---v~~~~~~g~---~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~t~~ 210 (372)
.| |.++|++-+ +.+....+-.. -..-.|.+ |.||++++. .....+ -|.||..+++
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~~~k~s-a~naFmvC---GvLY~~~s~--------------~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITTYNKRS-ASNAFMIC---GILYVTRSL--------------GSKGEKVFYAYDTNTGK 211 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcCCCccc-ccccEEEe---eEEEEEccC--------------CCCCcEEEEEEECCCCc
Confidence 34 335554332 22222222111 11112333 889998752 112233 4678988766
Q ss_pred EEEEeCCccCc----ceEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371 211 TTLVADGFYFA----NGVALSRDEDYVVVCESWKFRCRKYWL 248 (372)
Q Consensus 211 ~~~~~~~~~~~----~gi~~~~dg~~l~v~~~~~~~i~~~~~ 248 (372)
-+.+.-.+..+ ..+...|..+.||+-+.+ .+..|++
T Consensus 212 ~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng--~~l~Y~v 251 (255)
T smart00284 212 EGHLDIPFENMYEYISMLDYNPNDRKLYAWNNG--HLVHYDI 251 (255)
T ss_pred cceeeeeeccccccceeceeCCCCCeEEEEeCC--eEEEEEE
Confidence 44432222222 347788988889988754 3555654
No 307
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.11 E-value=64 Score=30.16 Aligned_cols=142 Identities=12% Similarity=0.101 Sum_probs=70.8
Q ss_pred EcCCCcEEE-EecCCeEEEEe--CCceEEEEecCC-CcccCeEEcCCCCEEEEeCCC-cEEEEcCCC-cEEEeeecCCcc
Q 017371 86 MDKNGVIYT-ATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNAN-GLHKVSEDG-VENFLSYVNGSK 159 (372)
Q Consensus 86 ~d~~G~l~v-~~~~g~i~~~~--~g~~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~~-gv~~~~~~g-~~~l~~~~~~~~ 159 (372)
+-|+-.+-+ ++.++.|..+| +|+.+.+..... ... .|+++..|.+.++.... -+..++-+. .+-+... -+ .
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~g-h 192 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IG-H 192 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cC-c
Confidence 334443333 34788899998 777655443222 244 88999889877764432 244444111 1111000 11 1
Q ss_pred cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeC
Q 017371 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~ 238 (372)
-+.+..+++-|.|.-..+.+ .+..+...+.++|.-.....+- ..-.-+.+..||. ++.+-+
T Consensus 193 ~h~vS~V~f~P~gd~ilS~s-----------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s 254 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCS-----------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCS 254 (406)
T ss_pred ccceeeEEEEecCCeeeecc-----------------cccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecC
Confidence 13445667777775444422 3444555555555433222211 1123466777775 666655
Q ss_pred CCCeEEEEEc
Q 017371 239 WKFRCRKYWL 248 (372)
Q Consensus 239 ~~~~i~~~~~ 248 (372)
...+|..+-.
T Consensus 255 ~dqtl~vW~~ 264 (406)
T KOG0295|consen 255 NDQTLRVWVV 264 (406)
T ss_pred CCceEEEEEe
Confidence 5555544433
No 308
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=76.60 E-value=72 Score=30.47 Aligned_cols=142 Identities=10% Similarity=-0.032 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCeEEEEe-CC--c------eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC---cEEEe
Q 017371 88 KNGVIYTATRDGWIKRLQ-DG--T------WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG---VENFL 152 (372)
Q Consensus 88 ~~G~l~v~~~~g~i~~~~-~g--~------~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g---~~~l~ 152 (372)
..|+|..+..++.|..++ +. . .+.+...-......+++.+ +..||.+-.. ..+..+| +.+ .....
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 367888888888899888 22 1 1111111112211444443 2244443322 3466666 432 11111
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeCCccCcceEEEecCC
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDE 230 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~~~~~~~gi~~~~dg 230 (372)
.. . ....+.+++.+-+...++.. ..+++|..+|...-.... +...-..-..+.|+|..
T Consensus 269 ~a-h---~~~vn~~~fnp~~~~ilAT~----------------S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 269 KA-H---SAEVNCVAFNPFNEFILATG----------------SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred cc-c---CCceeEEEeCCCCCceEEec----------------cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 11 0 12456788887654444433 257889988875322111 11111223468899998
Q ss_pred CEEEEEeCCCCeEEEEEcc
Q 017371 231 DYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 231 ~~l~v~~~~~~~i~~~~~~ 249 (372)
..++.+...++|+..+++.
T Consensus 329 etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceeEecccCCcEEEEecc
Confidence 8899888888899999885
No 309
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=76.15 E-value=66 Score=29.83 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecC-CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 197 PHGQLLKYDPSSNITTLVADGF-YFANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
.+|.|..||+.|++.-....+. ...|++.|..+ +-..+.+-+..+.|..|++..........+. +.++.| -+++|.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~-f~~ld~ 125 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTP-FICLDL 125 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCc-ceEeec
Confidence 5788999999886543333332 23478887653 4445555555667888887543212222222 223223 244554
Q ss_pred --CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--CcEEEEEECCCCCeeccceeeE
Q 017371 275 --DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTIIRNLVDPTGQLMSFVTSGL 350 (372)
Q Consensus 275 --~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g~~~~~~~~~~g~~~~~~t~~~ 350 (372)
.+++......- ......|+-+|-. -+.+..|.+ .....+|++.
T Consensus 126 nck~~ii~~GtE~------------------------------~~s~A~v~lwDvR~~qq~l~~~~e---SH~DDVT~lr 172 (376)
T KOG1188|consen 126 NCKKNIIACGTEL------------------------------TRSDASVVLWDVRSEQQLLRQLNE---SHNDDVTQLR 172 (376)
T ss_pred cCcCCeEEecccc------------------------------ccCceEEEEEEeccccchhhhhhh---hccCcceeEE
Confidence 56665544220 1113455656632 232444432 2234578888
Q ss_pred EE--CCEEEEEeCCCCeEEEEeC
Q 017371 351 QV--DNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 351 ~~--~g~L~igs~~~~~i~~~~~ 371 (372)
++ +.+|.+.......|.++++
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ecCCCCCeEEeecccceEEeeec
Confidence 86 3455555555567777764
No 310
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=75.85 E-value=26 Score=35.19 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=61.1
Q ss_pred CCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 194 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~ 194 (372)
+... ++++.+||+...+-...| +..+. ..+.+.+... .|.....--.|.+.=||++.+.....+
T Consensus 721 dqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk------------ 786 (1012)
T KOG1445|consen 721 DQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWACDGRIVIVVGFDK------------ 786 (1012)
T ss_pred Ccee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEecCcEEEEecccc------------
Confidence 4567 999999998765533334 55555 3443333221 111101112455666777666532111
Q ss_pred ccCCCeEEEEeCCCCeEEE----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 195 GKPHGQLLKYDPSSNITTL----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.....|..||..+-.... ..+.-..+---.+++|.+.|+++.-++.+|+.|.+-.
T Consensus 787 -~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 787 -SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 112234445543211111 1111111222236788889999998889999998643
No 311
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=75.15 E-value=69 Score=29.53 Aligned_cols=71 Identities=21% Similarity=0.137 Sum_probs=43.5
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC---eEEEE--eCCccCcceEEEecCCCEEEEE
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN---ITTLV--ADGFYFANGVALSRDEDYVVVC 236 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~---~~~~~--~~~~~~~~gi~~~~dg~~l~v~ 236 (372)
.+.++++.+||+-+.|-. .++.|..++.+.- +-+.+ .-....|..++|+||-+.+.|.
T Consensus 88 ~vt~~~FsSdGK~lat~~-----------------~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATIS-----------------GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ceeeeEEcCCCceeEEEe-----------------CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 345788888888666532 2333444443211 00001 1123468899999998878877
Q ss_pred eCCCCeEEEEEcc
Q 017371 237 ESWKFRCRKYWLK 249 (372)
Q Consensus 237 ~~~~~~i~~~~~~ 249 (372)
--.++.++.|.+.
T Consensus 151 ~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 151 VKRGNKLCVYKLV 163 (420)
T ss_pred EccCCEEEEEEee
Confidence 7778888888764
No 312
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=73.13 E-value=74 Score=29.00 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=69.8
Q ss_pred CcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccc
Q 017371 118 QTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 195 (372)
Q Consensus 118 ~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~ 195 (372)
..+ -+.|+|+|..+++... +.|+.++..| -+..... .+- ...+.++...+||+..++-.
T Consensus 49 eI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgH-sgAVM~l~~~~d~s~i~S~g---------------- 109 (338)
T KOG0265|consen 49 EIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGH-SGAVMELHGMRDGSHILSCG---------------- 109 (338)
T ss_pred eEE-EEEECCCCCeEeecCCcceEEEEeccccccceeee-ccc-cceeEeeeeccCCCEEEEec----------------
Confidence 345 7788999998887544 5677777333 2221111 111 12456777888998877643
Q ss_pred cCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 196 KPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 196 ~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
.+-+|+.+|.++|+...-. ..-.+.|.+....-|-.++.+.+.+..+..+|+.
T Consensus 110 -tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 110 -TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred -CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 4568999999888765433 2344556666555666666666666667777765
No 313
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=73.02 E-value=38 Score=26.03 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCCccEEEcCCCcEEEEe--cCCeEEEEe-CCceEEEEecCC-CcccCeEEc-CCCCEE-EEeCCCcEEEEcCCCcEEEe
Q 017371 79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTST-KEGHLI-ICDNANGLHKVSEDGVENFL 152 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~--~~g~i~~~~-~g~~~~~~~~~~-~p~~gl~~d-~dG~l~-v~~~~~gv~~~~~~g~~~l~ 152 (372)
..|.-+..+++|..+.++ ..+.+-.|- +..++++...++ +|.--+..+ +.+.-| +-....|.+++. +
T Consensus 4 isPSYvy~~sng~~~ass~g~~~g~nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft------~- 76 (123)
T PF11763_consen 4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFT------F- 76 (123)
T ss_pred cccceEEEcCCCcEEeeccCCcCceeeEEecCCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEE------E-
Confidence 367778889999998887 233355544 555555544332 343122222 112111 111112222221 1
Q ss_pred eecCCcccccccceEEccCCcEEEEe
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTV 178 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd 178 (372)
.-.....|..+-+..+|+||++.
T Consensus 77 ---~e~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 77 ---VESSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred ---cccCCCCcEEEEEecCCcEEEEc
Confidence 11123456678889999999985
No 314
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.16 E-value=17 Score=21.78 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=20.6
Q ss_pred CcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371 329 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371 (372)
Q Consensus 329 g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~ 371 (372)
|+++..+..+. . ..+++...+++||+++.. ..|..++.
T Consensus 1 G~~~W~~~~~~-~---~~~~~~v~~g~vyv~~~d-g~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGG-P---IWSSPAVAGGRVYVGTGD-GNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-TT-SEEEEEET
T ss_pred CceeEEEECCC-C---cCcCCEEECCEEEEEcCC-CEEEEEeC
Confidence 45666665543 2 235567788999999974 56666654
No 315
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=72.11 E-value=1.5e+02 Score=31.91 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=104.3
Q ss_pred CeEEc-CCCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCccccccccccc
Q 017371 122 GLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGK 196 (372)
Q Consensus 122 gl~~d-~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~ 196 (372)
.+.++ ..+.+|.++.. ..+.....++ ...+ -+...-.+.++++|- .+++|.+|..
T Consensus 441 ~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~----~~~g~~~~~~lavD~~~~~~y~tDe~---------------- 500 (877)
T KOG1215|consen 441 ALDFDVLNNRIYWADLSDEKICRASQDGSSECEL----CGDGLCIPEGLAVDWIGDNIYWTDEG---------------- 500 (877)
T ss_pred EEEEEecCCEEEEEeccCCeEeeeccCCCccceE----eccCccccCcEEEEeccCCceecccC----------------
Confidence 44444 34567777755 3355544333 2221 111234667899985 5689998863
Q ss_pred CCCeEEEEeCCCCe-EEEEeCCccCcceEEEecCCCEEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 197 PHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 197 ~~g~v~~~d~~t~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
...+..-+.+... ...+-..+..|..++++|-...+||++.+. .+|.+-.++|... ..........|+++++|-
T Consensus 501 -~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~---~~l~~~~~~~p~glt~d~ 576 (877)
T KOG1215|consen 501 -NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSER---AVLVTNGILWPNGLTIDY 576 (877)
T ss_pred -CceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCc---eEEEeCCccCCCcceEEe
Confidence 2233333333222 223334457899999999999999999873 4677777766422 222222245799999986
Q ss_pred CC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC
Q 017371 275 DG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD 353 (372)
Q Consensus 275 ~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~ 353 (372)
.. .+|-++... ...+...+.+|+.-+ ...... ...+..+...+
T Consensus 577 ~~~~~yw~d~~~---------------------------------~~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~ 620 (877)
T KOG1215|consen 577 ETDRLYWADAKL---------------------------------DYTIESANMDGQNRR-VVDSED--LPHPFGLSVFE 620 (877)
T ss_pred ecceeEEEcccC---------------------------------CcceeeeecCCCceE-Eecccc--CCCceEEEEec
Confidence 55 444444331 224666666665554 222111 23455666666
Q ss_pred CEEEEEeCCCCeEE
Q 017371 354 NHLYVISLTSNFIG 367 (372)
Q Consensus 354 g~L~igs~~~~~i~ 367 (372)
+++|-.......+.
T Consensus 621 ~~iyw~d~~~~~~~ 634 (877)
T KOG1215|consen 621 DYIYWTDWSNRAIS 634 (877)
T ss_pred ceeEEeeccccceE
Confidence 77776666555443
No 316
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=71.45 E-value=78 Score=28.49 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCCCCccEEEcCC-CcEEEEe-cCCeEEEEe-C-C-ceEEE--E-ecCCC-cccCeEEcCCCCEEEEeCCCcEEEEc--
Q 017371 76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-D-G-TWVNW--K-FIDSQ-TLVGLTSTKEGHLIICDNANGLHKVS-- 144 (372)
Q Consensus 76 g~~~~p~~i~~d~~-G~l~v~~-~~g~i~~~~-~-g-~~~~~--~-~~~~~-p~~gl~~d~dG~l~v~~~~~gv~~~~-- 144 (372)
|....-.+++..+. |.++.+. .+..|..++ . + .+... . ....+ .. .+|+.|.|++..+.+......+-
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeec
Confidence 44445667888876 7655444 555555555 3 2 22211 1 11122 34 88999999966665555544444
Q ss_pred CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC-CCCeEEEEe---CCcc
Q 017371 145 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNITTLVA---DGFY 219 (372)
Q Consensus 145 ~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~t~~~~~~~---~~~~ 219 (372)
.++ ++.+.. ++|.. +.+..+++..+|++..+=+ ..-.|+.... +.++++... ...+
T Consensus 91 ~~~efecv~~-lEGHE-nEVK~Vaws~sG~~LATCS-----------------RDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 91 EDGEFECVAT-LEGHE-NEVKCVAWSASGNYLATCS-----------------RDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred CCCceeEEee-eeccc-cceeEEEEcCCCCEEEEee-----------------CCCeEEEEEecCCCcEEEEeeeccccc
Confidence 455 665433 34432 4567899999999776533 3334544432 235665532 2233
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
--..+.++|... |+++-+..+.|..|+-.
T Consensus 152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred cccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 445788999876 77777777777776644
No 317
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.33 E-value=1.1e+02 Score=30.29 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=44.7
Q ss_pred cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEe--CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371 196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273 (372)
Q Consensus 196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d 273 (372)
.+.|.|+.|+...|+++.....-..++++...-+++.++... ....++..+....... ...+. ..+..+.++++.
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--~~~~~-~~~~~~~sl~is 153 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--IRIWK-EQKPLVSSLCIS 153 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--eeeec-cCCCccceEEEc
Confidence 356778888877788877665444444443222222233222 2334444444332111 11222 122347889999
Q ss_pred CCCCEEEEEec
Q 017371 274 PDGTFWIAIIK 284 (372)
Q Consensus 274 ~~G~lwva~~~ 284 (372)
+||.+.+....
T Consensus 154 ~D~~~l~~as~ 164 (541)
T KOG4547|consen 154 PDGKILLTASR 164 (541)
T ss_pred CCCCEEEeccc
Confidence 99977765544
No 318
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=70.43 E-value=31 Score=38.70 Aligned_cols=31 Identities=32% Similarity=0.182 Sum_probs=20.3
Q ss_pred CCccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 216 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
++......|.+++| .|||+++. ++||.-++.
T Consensus 486 dG~a~A~~VgLs~d--rLFvADse-GkLYsa~l~ 516 (1774)
T PF11725_consen 486 DGKAQAQSVGLSND--RLFVADSE-GKLYSADLP 516 (1774)
T ss_pred CCchhhhheeecCC--eEEEEeCC-CCEEecccc
Confidence 34445566788766 49999874 467765543
No 319
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.10 E-value=79 Score=28.04 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred cccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371 158 SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF 218 (372)
Q Consensus 158 ~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~ 218 (372)
.+...+|.|-.|| .+.|+++ .+++.+|.+|.++|+++....+.
T Consensus 112 ~evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred ccCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEEEcCC
Confidence 3455788999995 4667764 26789999999999998877653
No 320
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.07 E-value=79 Score=28.03 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred CCccEEEc-CCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEE-cCCCCEEEEeCCCcEEEEc-CCC
Q 017371 80 HPEDASMD-KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTS-TKEGHLIICDNANGLHKVS-EDG 147 (372)
Q Consensus 80 ~p~~i~~d-~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~-d~dG~l~v~~~~~gv~~~~-~~g 147 (372)
.-..+.+| +++.++++..|+.++.+| +|+++..-....+.+..++. ...+.++-+..+..+..+| +++
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc
Confidence 44468888 477888888999999999 88877654433332214444 3566777665444466677 655
No 321
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=69.70 E-value=1e+02 Score=29.18 Aligned_cols=114 Identities=8% Similarity=-0.013 Sum_probs=61.1
Q ss_pred CCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEee--ecCCccc-ccccceEEccCCcEEEEeCCCCCCCccccc
Q 017371 117 SQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLS--YVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCL 190 (372)
Q Consensus 117 ~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~--~~~~~~~-~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~ 190 (372)
|-.+ .|-|..+|+.++.... ..+..+. .+- ....+. .+-+.+. ..+..++++..++..++
T Consensus 57 GCiN-AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S------------- 122 (609)
T KOG4227|consen 57 GCIN-ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS------------- 122 (609)
T ss_pred cccc-eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec-------------
Confidence 3445 7888877775555333 2233343 222 111111 1122222 24557888877766554
Q ss_pred ccccccCCCeEEEEeCCCCeEEEEeCCcc---CcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 191 DILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 191 ~~~~~~~~g~v~~~d~~t~~~~~~~~~~~---~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
+...+.|.+-|..+++..-++..-. ...++..+|-.+ .+++.+...+|..++..
T Consensus 123 ----G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 123 ----GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ----CCCcceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEecc
Confidence 3456789988888776555543222 234666777765 44444445567766654
No 322
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.42 E-value=16 Score=21.78 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=15.9
Q ss_pred CcEEEEecCCeEEEEe--CCceE
Q 017371 90 GVIYTATRDGWIKRLQ--DGTWV 110 (372)
Q Consensus 90 G~l~v~~~~g~i~~~~--~g~~~ 110 (372)
|.+|+++.+|.|+.+| +|+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEE
Confidence 4678888888888888 66654
No 323
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=69.09 E-value=58 Score=30.18 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-----CCCCCceeEEcCCCCEEEEEec
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-----~~g~p~~i~~d~~G~lwva~~~ 284 (372)
+=||++++|.........-..++.-+.+....+.-. ...++-|+.--.+|++|+++.+
T Consensus 140 ~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLS 202 (442)
T PF15416_consen 140 SFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLS 202 (442)
T ss_pred CCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEecc
Confidence 346888888876554444444444344444333222 2227888888899999999875
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.64 E-value=1.4e+02 Score=30.48 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=31.2
Q ss_pred CeEEcCCCCEEEEeCCCcEEEEc--CCC---cEEEeeecCCcccccccceEEccCC-cEEEEeCC
Q 017371 122 GLTSTKEGHLIICDNANGLHKVS--EDG---VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSS 180 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~gv~~~~--~~g---~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~ 180 (372)
.+.+.++..+.++...+|++.+. ..+ ...+...........+..+.+++|| ++|.+|+.
T Consensus 81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence 34445555555555556655554 222 2222222221112356678899998 78888764
No 325
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=68.51 E-value=67 Score=30.44 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=57.0
Q ss_pred cccCeEEcCCCCEEEEeCCCc-EEEEcCCC--c-----------E-EEeeecCCcccccccceEEccCCcEEEEeCCCCC
Q 017371 119 TLVGLTSTKEGHLIICDNANG-LHKVSEDG--V-----------E-NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKY 183 (372)
Q Consensus 119 p~~gl~~d~dG~l~v~~~~~g-v~~~~~~g--~-----------~-~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~ 183 (372)
.+ .+.++++|+|..+..+.| ++.+.... . + .+....-......+.+++..+|++..++-+
T Consensus 68 VN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s---- 142 (434)
T KOG1009|consen 68 VN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS---- 142 (434)
T ss_pred eE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee----
Confidence 45 899999999887765555 33333210 0 0 011110111123566788888887766532
Q ss_pred CCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCC
Q 017371 184 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDED 231 (372)
Q Consensus 184 ~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~ 231 (372)
....++.+|...|+.....+ .-..++|++|+|-++
T Consensus 143 -------------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 143 -------------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred -------------ccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 45667778877787766543 356688999998765
No 326
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=68.50 E-value=88 Score=27.93 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEe-c-C------------CCcccCeEEcCCCCEEEE---eCC
Q 017371 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-I-D------------SQTLVGLTSTKEGHLIIC---DNA 137 (372)
Q Consensus 78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~-~-~------------~~p~~gl~~d~dG~l~v~---~~~ 137 (372)
..|+..++. +|.||.-. ....|.|++ .+.+..... + . ..-. .+++|. ..|||. ...
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE-~GLWvIYat~~~ 144 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDE-NGLWVIYATEDN 144 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcC-CCEEEEEecCCC
Confidence 566777765 67888766 567899999 444442211 1 1 0113 677774 457776 222
Q ss_pred Cc---EEEEcCCC---cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe-EEEEeCCCCe
Q 017371 138 NG---LHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ-LLKYDPSSNI 210 (372)
Q Consensus 138 ~g---v~~~~~~g---~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~t~~ 210 (372)
.| |.++|++. .+.+....... ..-+ +|=-=|.||++++... ...+ -+.||..+++
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~~k~--~~~n--aFmvCGvLY~~~s~~~--------------~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSYPKR--SAGN--AFMVCGVLYATDSYDT--------------RDTEIFYAFDTYTGK 206 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEeccCch--hhcc--eeeEeeEEEEEEECCC--------------CCcEEEEEEECCCCc
Confidence 34 44566433 23333222211 1111 2222488999876411 1133 4678887776
Q ss_pred EEEEeCCcc----CcceEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371 211 TTLVADGFY----FANGVALSRDEDYVVVCESWKFRCRKYWL 248 (372)
Q Consensus 211 ~~~~~~~~~----~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 248 (372)
.+.+.-.+. ...-+...|..+.||+-+.+. +..|++
T Consensus 207 ~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~--~v~Y~v 246 (250)
T PF02191_consen 207 EEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY--QVTYDV 246 (250)
T ss_pred eeceeeeeccccCceEeeeECCCCCeEEEEECCe--EEEEEE
Confidence 554332222 234577889888899988654 555554
No 327
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.41 E-value=98 Score=28.47 Aligned_cols=143 Identities=10% Similarity=0.062 Sum_probs=64.6
Q ss_pred CccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeee
Q 017371 81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY 154 (372)
Q Consensus 81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~ 154 (372)
..+|++-|.|.|-++- .|+.+.-|+ .|+..........+. -+.+++.|.-|+....++|-.+. .+. ...+...
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc
Confidence 4455555666555544 344344444 444333323333444 56677777644444444444433 221 1111000
Q ss_pred cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEE-Ee-cC
Q 017371 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVA-LS-RD 229 (372)
Q Consensus 155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~-~~-~d 229 (372)
..+-.+.+...+.+.++ ..++.+...|.+++..- ..-+..+| ++. +. ++
T Consensus 209 ------~r~l~~~~l~~~~L~vG------------------~d~~~i~~~D~ds~~~~--~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 209 ------KRILCATFLDGSELLVG------------------GDNEWISLKDTDSDTPL--TEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred ------ccceeeeecCCceEEEe------------------cCCceEEEeccCCCccc--eeeecchhheeeeEEEecCC
Confidence 12223445555555553 23345566666543221 11122233 344 22 34
Q ss_pred CCEEEEEeCCCCeEEEEEccCC
Q 017371 230 EDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 230 g~~l~v~~~~~~~i~~~~~~g~ 251 (372)
+ +++++-+..+.|..++++-.
T Consensus 263 ~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 H-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred c-eEEEEeccCceEEEEEcccc
Confidence 4 56677766666766666543
No 328
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=67.93 E-value=93 Score=28.00 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=92.5
Q ss_pred CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371 116 DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (372)
Q Consensus 116 ~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~ 191 (372)
..+|+..+....+|.|..+... .-.-.+- .+| +-.+ .|- ...+..+++|.+.+..+|
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty----~GH-tGavW~~Did~~s~~liT-------------- 69 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY----DGH-TGAVWCCDIDWDSKHLIT-------------- 69 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee----cCC-CceEEEEEecCCcceeee--------------
Confidence 3466667788888887665433 2222222 234 1111 111 013344555555544444
Q ss_pred cccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC----CCeEEEEEccCCC--Ccceeeecc--CC
Q 017371 192 ILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW----KFRCRKYWLKGER--KGKLETFAE--NL 263 (372)
Q Consensus 192 ~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~----~~~i~~~~~~g~~--~~~~~~~~~--~~ 263 (372)
+..+..+..+|-++|+..-...--....++.|+.+|+...++... ..-|..|++.... ....+.+.. ..
T Consensus 70 ---GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 70 ---GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred ---ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 334555566677777765443332333567899999865554321 1245566664321 111111110 11
Q ss_pred CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCe
Q 017371 264 PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQL 342 (372)
Q Consensus 264 ~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~ 342 (372)
..-+.....++-|...|+... .|.|..||.. |+.+..-. ...
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe----------------------------------~G~is~~da~~g~~~v~s~---~~h 189 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHE----------------------------------DGSISIYDARTGKELVDSD---EEH 189 (327)
T ss_pred ccceeeeeecccCCEEEEecC----------------------------------CCcEEEEEcccCceeeech---hhh
Confidence 112334455677766676665 6788888844 54432111 111
Q ss_pred eccceeeEEE-CCEEEEEeCC
Q 017371 343 MSFVTSGLQV-DNHLYVISLT 362 (372)
Q Consensus 343 ~~~~t~~~~~-~g~L~igs~~ 362 (372)
...++.+... +...+|.+..
T Consensus 190 ~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 190 SSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred ccccccccccCCcceEEeccc
Confidence 2246666665 4556665543
No 329
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.38 E-value=1.5e+02 Score=30.25 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCcEEEEecCCeEEEEe-CC-ceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEeeecCCccccccc
Q 017371 89 NGVIYTATRDGWIKRLQ-DG-TWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFAN 164 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~~-~g-~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~~~~~~~~~~~~~ 164 (372)
.|+|.+|..|+.|.++. ++ ..- .+..-.+... ++....++.|.-+..+.-+.++.... ...+ .+-. ..+.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l----~gH~-asVW 144 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWDSTAKVWRIGELVYSL----QGHT-ASVW 144 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEecccccceEEecchhhhccc----CCcc-hhee
Confidence 56788888888888776 32 211 1111122344 66666677754444444444443211 2211 2211 2334
Q ss_pred ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEE
Q 017371 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 244 (372)
Q Consensus 165 ~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~ 244 (372)
.++.=+++ .|+|-+ .+..|..+..+ ...+.+......-.|+++-+++.++-.+ +++-|.
T Consensus 145 Av~~l~e~-~~vTgs-----------------aDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flScs--NDg~Ir 203 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGS-----------------ADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLSCS--NDGSIR 203 (745)
T ss_pred eeeecCCC-cEEecc-----------------CcceeeeccCC-chhhhhccchhheeeeEEecCCCeEeec--CCceEE
Confidence 55555666 667633 33334444432 2222222223345688888777644333 344455
Q ss_pred EEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 245 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 245 ~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
.++++|+.+-+. + ....+.-.|....++.+.|++..
T Consensus 204 ~w~~~ge~l~~~--~--ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 204 LWDLDGEVLLEM--H--GHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred EEeccCceeeee--e--ccceEEEEEEecCCCCeEEEecC
Confidence 566655422211 1 11123334554556667777766
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.31 E-value=1.5e+02 Score=30.08 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=19.4
Q ss_pred cCcceEEEecCCCEEEEEeCCCCeEEE
Q 017371 219 YFANGVALSRDEDYVVVCESWKFRCRK 245 (372)
Q Consensus 219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~ 245 (372)
-.|..++-+|.|+++.|+..+.+.|+.
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEE
Confidence 357778888888888888776665553
No 331
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=65.31 E-value=1.1e+02 Score=27.68 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CcccCeEEcCC-CCEEEEeCC-CcEEEEcCC-C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371 118 QTLVGLTSTKE-GHLIICDNA-NGLHKVSED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (372)
Q Consensus 118 ~p~~gl~~d~d-G~l~v~~~~-~gv~~~~~~-g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~ 193 (372)
+.. .+++.|. |+++.+... +.|..++.. + --...+-..+.-.+.+..+|..|.|++..+-+
T Consensus 16 r~W-~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------------- 80 (312)
T KOG0645|consen 16 RVW-SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------------- 80 (312)
T ss_pred cEE-EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee--------------
Confidence 445 7777776 765554333 555556522 3 22222222333346788999999999554432
Q ss_pred cccCCCeEEEEeCCCCeEEEEeC--C-ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 194 EGKPHGQLLKYDPSSNITTLVAD--G-FYFANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~~~~~~--~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
.++.+..+.-..++++.+.. + -..-..++|+++|++|-.+.. +..|+.+..+
T Consensus 81 ---FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-DKSVWiWe~d 135 (312)
T KOG0645|consen 81 ---FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-DKSVWIWEID 135 (312)
T ss_pred ---ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-CCeEEEEEec
Confidence 33445545444567776542 2 223457999999997766654 4457776665
No 332
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=15 Score=35.94 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=48.7
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 144 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~ 144 (372)
.=.|++...+|+|.+|+.+|.|..|+ -+ ..++-.+..|.++.++.+..||...+++...-++.++
T Consensus 432 nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 34578888899999999999999998 33 3444445567776688888999977777666676666
No 333
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=64.85 E-value=1.2e+02 Score=28.00 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCcEEEEec------CCeEEEEe--CCceEEEEecC--CCcccCeEEcCCCCEEEEeCCC-----cEEEEc-CCC-cEEE
Q 017371 89 NGVIYTATR------DGWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNAN-----GLHKVS-EDG-VENF 151 (372)
Q Consensus 89 ~G~l~v~~~------~g~i~~~~--~g~~~~~~~~~--~~p~~gl~~d~dG~l~v~~~~~-----gv~~~~-~~g-~~~l 151 (372)
++.||+... ...++++| ..+|+...... .+.. ..+..-++.|||..... .+.++| .+. .+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 578887531 23578888 56777654321 2222 23333468899975432 256777 444 5544
Q ss_pred e
Q 017371 152 L 152 (372)
Q Consensus 152 ~ 152 (372)
.
T Consensus 202 ~ 202 (323)
T TIGR03548 202 A 202 (323)
T ss_pred C
Confidence 3
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.76 E-value=36 Score=33.75 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=47.7
Q ss_pred CCccEEEcCC-CcEEEEecCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc
Q 017371 80 HPEDASMDKN-GVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS 144 (372)
Q Consensus 80 ~p~~i~~d~~-G~l~v~~~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~ 144 (372)
.+.+.+..++ ..+.+|..||.|..|| +-.+.......-.|. -+++.|+|.+++....+| +..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 5667777764 4788888999999999 545555555555678 999999998877766655 66777
No 335
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=63.43 E-value=26 Score=34.39 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCccEEEcCCCc-EEEEecCCeEEEEe-C-CceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc--CCCcEEEee
Q 017371 80 HPEDASMDKNGV-IYTATRDGWIKRLQ-D-GTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLS 153 (372)
Q Consensus 80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~-~-g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g~~~l~~ 153 (372)
.+..+++.+||. |-+.+.||.+..|+ + -++. ......+.-+ .+++.|||+..++....-|+.+- .++ ++++.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVAR 369 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVAR 369 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccc-eEEEe
Confidence 788899999994 44555899888887 3 2221 1223445556 89999999977765444444433 333 22221
Q ss_pred ecCCcccccccceEEcc
Q 017371 154 YVNGSKLRFANDVVEAS 170 (372)
Q Consensus 154 ~~~~~~~~~~~~l~~d~ 170 (372)
. .|-+ ..++.++||+
T Consensus 370 G-qGHk-SWVs~VaFDp 384 (636)
T KOG2394|consen 370 G-QGHK-SWVSVVAFDP 384 (636)
T ss_pred c-cccc-cceeeEeecc
Confidence 1 2211 3567788886
No 336
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=63.35 E-value=1.2e+02 Score=27.72 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=67.0
Q ss_pred CeEEcCC-CCEEEEeCCCcEEEEc-C-CC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371 122 GLTSTKE-GHLIICDNANGLHKVS-E-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (372)
Q Consensus 122 gl~~d~d-G~l~v~~~~~gv~~~~-~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~ 197 (372)
.+.+++. +.|.|+..+.-+..++ + +. ...+.... ..-+-++.++-++|+++ -
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~------plL~c~F~d~~~~~~G~------------------~ 73 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA------PLLDCAFADESTIVTGG------------------L 73 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC------ceeeeeccCCceEEEec------------------c
Confidence 6677754 4677877655465565 2 22 22222221 12245666677888854 4
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
+|.|.++|..+++...+.+....-..+...+..+ .+++.+++.+|..++..+
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 6889999999888777766655556777775444 778888888888887653
No 337
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=63.28 E-value=83 Score=29.85 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=37.4
Q ss_pred cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371 219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 282 (372)
Q Consensus 219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~ 282 (372)
..+.-++|++|+. +.++.+..+.+..+++.. +......+....++.+++.|+-+.+..+.
T Consensus 124 ~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCc-eeeeeeccceEEEEEecc---ceeEeeccccccccceeecchhhhhhhhh
Confidence 3456789999998 555666677788888743 34433333444567777777665444433
No 338
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=62.73 E-value=1.8e+02 Score=29.48 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=32.1
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEEccCCCCc-ceeeec-cCCC------CCCceeEEcCCCC-EEEEEec
Q 017371 224 VALSRDEDYVVVCESWKFRCRKYWLKGERKG-KLETFA-ENLP------GAPDNINLAPDGT-FWIAIIK 284 (372)
Q Consensus 224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~-~~~~------g~p~~i~~d~~G~-lwva~~~ 284 (372)
+.+..|+..|.-+...+..|.++|+...... ..+... +..+ -.-.++.+|+.|+ +++.+..
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 5566788766655554666667777533111 111110 0000 0134788999995 5555654
No 339
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=62.39 E-value=1.2e+02 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
.++.++.++.+..+.......+. -|..++++|++++..... ..+|.+|.++..
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~ 190 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE 190 (344)
T ss_pred cceeEEEEecCcccceeeccccc-eeeeEEcCCCceEEEecC-CCcceEEEeCCc
Confidence 45666666655433333222222 578899999996665554 457999988754
No 340
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=62.16 E-value=1.3e+02 Score=27.84 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=22.1
Q ss_pred CeEEEEeCCCCeEEEEeCCccCc-ceEEE-ecCCCEEEEEe
Q 017371 199 GQLLKYDPSSNITTLVADGFYFA-NGVAL-SRDEDYVVVCE 237 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~~~~~~~-~gi~~-~~dg~~l~v~~ 237 (372)
..+.+||+.+++.+.+..-...+ .+.++ .-++ .+|+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~-~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGN-KLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECC-EEEEEe
Confidence 57999999998888764322112 22222 2244 588764
No 341
>PLN02153 epithiospecifier protein
Probab=61.71 E-value=1.4e+02 Score=27.79 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=50.3
Q ss_pred eEEEEe--CCceEEEEecCCCcc---cCeEE-cCCCCEEEEeCC------CcEEEEc-CCC-cEEEeee-cCCccccccc
Q 017371 100 WIKRLQ--DGTWVNWKFIDSQTL---VGLTS-TKEGHLIICDNA------NGLHKVS-EDG-VENFLSY-VNGSKLRFAN 164 (372)
Q Consensus 100 ~i~~~~--~g~~~~~~~~~~~p~---~gl~~-d~dG~l~v~~~~------~gv~~~~-~~g-~~~l~~~-~~~~~~~~~~ 164 (372)
.++++| ..+++........|. .+.+. .-++.||+.... ..+.++| .+. .+.+... ....+.....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 578888 555655432221121 02221 125778887432 2367788 444 5544321 0010111112
Q ss_pred ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (372)
Q Consensus 165 ~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~ 215 (372)
.-+..-+++||+.=.....+ . .........|++||+++.+.+.+.
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~---~---~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGG---L---MKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred eEEEEECCEEEEECCccCCC---c---cCCCcccceEEEEECCCCeEeeCC
Confidence 22333567899842110000 0 000001235889999988887654
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.41 E-value=1.8e+02 Score=28.43 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCccEEEcCCCcEEEEecCCeEEEEeCCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc--CCC-cEEEeeec
Q 017371 79 NHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-VENFLSYV 155 (372)
Q Consensus 79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g-~~~l~~~~ 155 (372)
..|..|...|+|+..+...+|.-..+....++.-.. |... ..++.+.|+..+.+....+..+. .+. ...+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~--G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-- 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF--GSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-- 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE--EE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-------
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc--Ccee-EEEEecCccEEEEECCCeEEEEEcCccccceEEcC--
Confidence 359999999999776666666555554222222111 2233 55666666655555544344432 111 111111
Q ss_pred CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEE
Q 017371 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 235 (372)
Q Consensus 156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v 235 (372)
+ ..+.+|.- |.+.... ..+.|..||-+++++..-.+. .....+.|+++|+.+-+
T Consensus 108 ~----~~~~~If~---G~LL~~~------------------~~~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 108 P----FSVEKIFG---GNLLGVK------------------SSDFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVAL 161 (443)
T ss_dssp S----S-EEEEE----SSSEEEE------------------ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEE
T ss_pred C----cccceEEc---CcEEEEE------------------CCCCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEE
Confidence 1 01223322 6655532 344688899887765443332 11368899999987777
Q ss_pred EeCCCCeEEEEEcc
Q 017371 236 CESWKFRCRKYWLK 249 (372)
Q Consensus 236 ~~~~~~~i~~~~~~ 249 (372)
.....--|.+++.+
T Consensus 162 ~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 162 VTKDSIYILKYNLE 175 (443)
T ss_dssp E-S-SEEEEEE-HH
T ss_pred EeCCeEEEEEecch
Confidence 75555556666654
No 343
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=58.19 E-value=2.3e+02 Score=29.32 Aligned_cols=103 Identities=16% Similarity=0.068 Sum_probs=56.8
Q ss_pred ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC----cceEEEecCCCEEEEE
Q 017371 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF----ANGVALSRDEDYVVVC 236 (372)
Q Consensus 161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~----~~gi~~~~dg~~l~v~ 236 (372)
....+|++|+.-++.++.- .+-.|..||.++|+......+-.. +.-+.++|.|.++. +
T Consensus 597 tTlYDm~Vdp~~k~v~t~c-----------------QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a-t 658 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVC-----------------QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA-T 658 (1080)
T ss_pred ceEEEeeeCCCcceEEEEe-----------------cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE-E
Confidence 4667899998876655421 234577777777777666655433 33466788875333 3
Q ss_pred eCCCCeEEEEEccCCC-----CcceeeeccCCCCCCc---eeEEcCCCCEEEEE
Q 017371 237 ESWKFRCRKYWLKGER-----KGKLETFAENLPGAPD---NINLAPDGTFWIAI 282 (372)
Q Consensus 237 ~~~~~~i~~~~~~g~~-----~~~~~~~~~~~~g~p~---~i~~d~~G~lwva~ 282 (372)
...+..+..|+...+. .+.-|... ...-.+| =|.+..||.|+|=-
T Consensus 659 Scsdktl~~~Df~sgEcvA~m~GHsE~VT-G~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVAQMTGHSEAVT-GVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecCCceEEEEeccchhhhhhcCcchhee-eeeecccchhheeecCCceEEEEE
Confidence 3345567777754321 11111111 1100122 27778899877743
No 344
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=57.63 E-value=33 Score=20.14 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=19.7
Q ss_pred CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371 171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 214 (372)
Q Consensus 171 dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~ 214 (372)
||++|.+.... .....|.|++++++ +...++
T Consensus 1 dg~lYGTT~~G------------G~~~~GTvf~~~~~-g~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGG------------GASGFGTLYRLSTA-GGTTVL 31 (34)
T ss_pred CCcEEEEcccC------------CCCCceeEEEEcCC-CCeEEE
Confidence 57788876521 12356889999997 444443
No 345
>KOG4328 consensus WD40 protein [Function unknown]
Probab=57.61 E-value=1.9e+02 Score=28.06 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=22.3
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLK 249 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~ 249 (372)
.-+++++.|-..+++.+.+.++....+|+.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehh
Confidence 457899999988888887766666566654
No 346
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=57.28 E-value=1.8e+02 Score=27.72 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=49.9
Q ss_pred ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
...+..|..+|..||+..+-.+.-..-..+.|+.||+ ++++...+.+|..+++...+.-. +. .......|.-..+-.
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~-e~-~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVS-EG-VAHEGAKPARAIFLA 226 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEee-ec-ccccCCCcceeEEec
Confidence 3356778888888887655444222223577889997 77777777788888875432111 11 111222344455556
Q ss_pred CCCEEEEEec
Q 017371 275 DGTFWIAIIK 284 (372)
Q Consensus 275 ~G~lwva~~~ 284 (372)
+|.+..+..+
T Consensus 227 ~g~i~tTGfs 236 (472)
T KOG0303|consen 227 SGKIFTTGFS 236 (472)
T ss_pred cCceeeeccc
Confidence 6665555443
No 347
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=57.22 E-value=29 Score=32.85 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.6
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 223 GVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
-+-+|-|.++||++.+..+-|++|++..+
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 46788899999999999999999998765
No 348
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=56.70 E-value=1.4e+02 Score=27.73 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=45.3
Q ss_pred ecCCCEEEEEeCCC-CeEEEEEccCCCCcceeeeccCCC---CCCceeEEcCCCCEEEEEe-cCchhHHHHhhcchhHHH
Q 017371 227 SRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLP---GAPDNINLAPDGTFWIAII-KLDARRMKILNSSKLIKH 301 (372)
Q Consensus 227 ~~dg~~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~---g~p~~i~~d~~G~lwva~~-~~~~~~~~~~~~~~~~r~ 301 (372)
+.+.++|++.+... +.|..|+++..+....-.+-...| +.+.++... ...+|+... .
T Consensus 52 ~~~~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~-~Dsi~l~~~~~----------------- 113 (333)
T PF13970_consen 52 SDGKKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQN-LDSIFLFNSYA----------------- 113 (333)
T ss_dssp ETTEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEES-SSTTSEEEEGG-----------------
T ss_pred cCCcEEEEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEc-CCceEEEecCC-----------------
Confidence 33444555677665 789999998654443333322111 223345533 334555443 3
Q ss_pred HHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCC---C---eecc--ceeeEEECCEEEEEeC
Q 017371 302 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG---Q---LMSF--VTSGLQVDNHLYVISL 361 (372)
Q Consensus 302 ~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g---~---~~~~--~t~~~~~~g~L~igs~ 361 (372)
...+..+|.+|+++..+.-... . .+.. -+.+...++.+|++..
T Consensus 114 -----------------~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
T PF13970_consen 114 -----------------FPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQP 164 (333)
T ss_dssp -----------------GTEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE--
T ss_pred -----------------cceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeee
Confidence 2478999999999887754321 1 0110 1233445677788765
No 349
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=56.60 E-value=23 Score=34.16 Aligned_cols=20 Identities=20% Similarity=0.664 Sum_probs=18.1
Q ss_pred CCCceeEEcCCCCEEEEEec
Q 017371 265 GAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 265 g~p~~i~~d~~G~lwva~~~ 284 (372)
-+|.++.+|+||.+|+.+.+
T Consensus 467 ylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred ecCCcceecCCCcEEeeccc
Confidence 36899999999999999977
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=56.32 E-value=1.7e+02 Score=27.30 Aligned_cols=135 Identities=21% Similarity=0.153 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCeEEEEeCC------ccCcceEEEecCCCEEEEEeC--CCCe--EEEEEccCCCCcceeeeccCCCCC--
Q 017371 199 GQLLKYDPSSNITTLVADG------FYFANGVALSRDEDYVVVCES--WKFR--CRKYWLKGERKGKLETFAENLPGA-- 266 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~~~------~~~~~gi~~~~dg~~l~v~~~--~~~~--i~~~~~~g~~~~~~~~~~~~~~g~-- 266 (372)
-.|+.+|.++++...+... ...-..+.|.+|++.+++.-. ..++ +..++........ ...+...++
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv~ 235 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV--VLEETSDGWVD 235 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE--EEEEESSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE--EEEecCCccee
Confidence 4567778777765432211 111235778888885665443 3333 4445554322111 111122222
Q ss_pred -CceeEE---cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCe
Q 017371 267 -PDNINL---APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 342 (372)
Q Consensus 267 -p~~i~~---d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~ 342 (372)
...+.. +.++-+|++... ....|+.++.+|....-+. .|.
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~---------------------------------G~~hly~~~~~~~~~~~lT--~G~- 279 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERD---------------------------------GYRHLYLYDLDGGKPRQLT--SGD- 279 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETT---------------------------------SSEEEEEEETTSSEEEESS---SS-
T ss_pred eecccccccCCCCEEEEEEEcC---------------------------------CCcEEEEEcccccceeccc--cCc-
Confidence 233443 333357777633 1568899998887755333 232
Q ss_pred ecc--ceeeEEECCEEEEEeCCC----CeEEEEeC
Q 017371 343 MSF--VTSGLQVDNHLYVISLTS----NFIGKVQL 371 (372)
Q Consensus 343 ~~~--~t~~~~~~g~L~igs~~~----~~i~~~~~ 371 (372)
... +..+-+.++.||+.+... ..|-++++
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 211 222222347888777652 35555554
No 351
>PLN02153 epithiospecifier protein
Probab=55.42 E-value=1.8e+02 Score=27.06 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.4
Q ss_pred CeEEEEeCCCCeEEEEe
Q 017371 199 GQLLKYDPSSNITTLVA 215 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~ 215 (372)
..+++||+.+.+.+.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988887654
No 352
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=53.26 E-value=41 Score=22.19 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=30.0
Q ss_pred ceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEEC
Q 017371 268 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 337 (372)
Q Consensus 268 ~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 337 (372)
..+++.+||.|.++-..... .......+.|++++|.+-.+|..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~---------------------------~~~~~~~l~Rln~DGsLDttFg~ 46 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS---------------------------SGNNDFVLARLNADGSLDTTFGT 46 (55)
T ss_pred EEEEECCCCcEEEEEEeecC---------------------------CCcccEEEEEECCCCCccCCcCC
Confidence 46788999999998764110 01224579999999998777643
No 353
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.50 E-value=3.1e+02 Score=29.01 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=31.6
Q ss_pred ccCCCeEEEEeCC----CCeEEEEe-CCccCcceEEEecCCCE-EEEEeCCCCeEEEEEccCC
Q 017371 195 GKPHGQLLKYDPS----SNITTLVA-DGFYFANGVALSRDEDY-VVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 195 ~~~~g~v~~~d~~----t~~~~~~~-~~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~g~ 251 (372)
+-.+|.|++|..+ .|....+. .+-..-.|+++..|++. ++++.+ .+|..|.+.|.
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr 203 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGR 203 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCC
Confidence 3457788887532 12211222 22233468998888887 455543 35888888754
No 354
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=52.15 E-value=1.1e+02 Score=30.40 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 198 HGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
+-+.|.+....++.+.+.. .-.+.|.+-++|.|+++.++... ++.+.-|+.+-........ . ..-.-..+..|+
T Consensus 471 tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~--eh~~at~veWDP 547 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-P--EHFAATEVEWDP 547 (698)
T ss_pred ceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-c--cccccccceECC
Confidence 3345555533333332211 12567899999999988887754 5668888865311111100 1 111246788999
Q ss_pred CCCEEEEEec
Q 017371 275 DGTFWIAIIK 284 (372)
Q Consensus 275 ~G~lwva~~~ 284 (372)
.|++.+++..
T Consensus 548 tGRYvvT~ss 557 (698)
T KOG2314|consen 548 TGRYVVTSSS 557 (698)
T ss_pred CCCEEEEeee
Confidence 9998888754
No 355
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.58 E-value=2e+02 Score=26.46 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=30.2
Q ss_pred CCeEEEEeCCCCeEEEEeCCc--cCcceEEEecCCCEEEEEeCCC----CeEEEEEccCC
Q 017371 198 HGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK----FRCRKYWLKGE 251 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~~----~~i~~~~~~g~ 251 (372)
...+++||+.+.+++.+..-. ......+..-++ .+|+..-.. ..+++|++...
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence 357999999988887754211 111222223334 588875322 24678887643
No 356
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.45 E-value=2.4e+02 Score=27.19 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=43.0
Q ss_pred cccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 194 EGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 194 ~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.+..+..|..+|.++++...... .-..-+.+.|++..-.++++.+...+|..++...
T Consensus 261 SgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred ecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 34566788889998888776654 2334467889998888888988888898888763
No 357
>PF13964 Kelch_6: Kelch motif
Probab=49.65 E-value=31 Score=21.70 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=23.2
Q ss_pred ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (372)
Q Consensus 169 d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~ 215 (372)
.-+|+||+.-.... .......+++||+++++.+.+.
T Consensus 9 ~~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 9 VVGGKIYVFGGYDN-----------SGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EECCEEEEECCCCC-----------CCCccccEEEEcCCCCcEEECC
Confidence 35678998522100 0234567999999999887753
No 358
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.28 E-value=2.1e+02 Score=25.78 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=13.8
Q ss_pred CeEEcCCCCEEEEeCC-CcEEEEc
Q 017371 122 GLTSTKEGHLIICDNA-NGLHKVS 144 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~-~gv~~~~ 144 (372)
||++. ||..+|+-.. +.+..+.
T Consensus 139 GLAvr-dG~~~VsfEr~hRI~iyp 161 (340)
T COG4246 139 GLAVR-DGDALVSFERDHRIWIYP 161 (340)
T ss_pred cceEe-cCceEEEeeccceeEEec
Confidence 78876 7887777433 4554444
No 359
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=48.20 E-value=2.9e+02 Score=27.49 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE-eCCCCeEEEEEccCCCCcceeeeccCCCCCCce-eEEcCC
Q 017371 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC-ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPD 275 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~-i~~d~~ 275 (372)
...||.++.++.+..+-...-.--..+.|+++++.+-|+ .-.-..+..|++++. ...+..+| |.| +.+.+.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~eg-pRN~~~fnp~ 322 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEG-PRNTAFFNPH 322 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCC-CccceEECCC
Confidence 446888887633333322222222468899998765554 333356777887653 22222333 554 778999
Q ss_pred CCEEE-EEec
Q 017371 276 GTFWI-AIIK 284 (372)
Q Consensus 276 G~lwv-a~~~ 284 (372)
|||.+ |..+
T Consensus 323 g~ii~lAGFG 332 (566)
T KOG2315|consen 323 GNIILLAGFG 332 (566)
T ss_pred CCEEEEeecC
Confidence 98554 4444
No 360
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=48.03 E-value=11 Score=34.38 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=15.8
Q ss_pred cccccchhHHHHHHHHHHHHh
Q 017371 23 VPACYSFGFLLVCLIAFLLQI 43 (372)
Q Consensus 23 ~~~~~~~~~~~~~~~a~~~~~ 43 (372)
|+|+++-.+||+|+||+|.|-
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 456666558888999998876
No 361
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=47.87 E-value=3.1e+02 Score=27.63 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371 128 EGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (372)
Q Consensus 128 dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 206 (372)
+|.+......+-+..++ .++.... ....|- .....++++...+.++++-+ .+.++...|.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH-~g~V~~l~~~~~~~~lvsgS-----------------~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGH-FGGVWGLAFPSGGDKLVSGS-----------------TDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEE-eeccCC-CCCceeEEEecCCCEEEEEe-----------------cCCcEEeEec
Confidence 45544443334455666 4442211 111221 23456788876567777633 3445666666
Q ss_pred CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 017371 207 SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 286 (372)
Q Consensus 207 ~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~ 286 (372)
.+|+-.....+.. ..+.+++.++ .+.++.+....|..+++.+++.- ..+. ...+-...+..+ +++.|+...
T Consensus 279 ~sg~C~~~l~gh~-stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l--~l~~-~h~~~V~~v~~~--~~~lvsgs~-- 349 (537)
T KOG0274|consen 279 STGECTHSLQGHT-SSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACL--NLLR-GHTGPVNCVQLD--EPLLVSGSY-- 349 (537)
T ss_pred CCCcEEEEecCCC-ceEEEEEccC-ceEeeccCCceEEEEeccCcceE--EEec-cccccEEEEEec--CCEEEEEec--
Confidence 7777666554332 2345566555 36666667777888887643211 1111 111223345555 544444433
Q ss_pred hhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEEC-CEEEEEeCCCC
Q 017371 287 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSN 364 (372)
Q Consensus 287 ~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~igs~~~~ 364 (372)
.+.|...+. .++.+.++.... ..++++..+. .++|-|++. .
T Consensus 350 --------------------------------d~~v~VW~~~~~~cl~sl~gH~----~~V~sl~~~~~~~~~Sgs~D-~ 392 (537)
T KOG0274|consen 350 --------------------------------DGTVKVWDPRTGKCLKSLSGHT----GRVYSLIVDSENRLLSGSLD-T 392 (537)
T ss_pred --------------------------------CceEEEEEhhhceeeeeecCCc----ceEEEEEecCcceEEeeeec-c
Confidence 234444453 577777776543 3578888777 899999988 6
Q ss_pred eEEEEeC
Q 017371 365 FIGKVQL 371 (372)
Q Consensus 365 ~i~~~~~ 371 (372)
.|-+.++
T Consensus 393 ~IkvWdl 399 (537)
T KOG0274|consen 393 TIKVWDL 399 (537)
T ss_pred ceEeecC
Confidence 7777765
No 362
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=47.81 E-value=2.2e+02 Score=25.94 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=24.8
Q ss_pred CeEEEEeCCCCeEEEEe---CCccCcceEEEecCCCEEEEEeCC
Q 017371 199 GQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCESW 239 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~~---~~~~~~~gi~~~~dg~~l~v~~~~ 239 (372)
|.||+-+-..+..+.+. .++..+|-++.+.|++++.|...+
T Consensus 148 Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG 191 (339)
T COG4447 148 GAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG 191 (339)
T ss_pred ceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc
Confidence 45555543322333222 235578889999999888877755
No 363
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.91 E-value=2.5e+02 Score=29.22 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=60.7
Q ss_pred cCCCeEEEEeCCC----CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeE
Q 017371 196 KPHGQLLKYDPSS----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 271 (372)
Q Consensus 196 ~~~g~v~~~d~~t----~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~ 271 (372)
..+|.|..+|... +....+-..-...+-+.|++-.-.++++.+.+..|..||+...+.. ..+..+-. -...+.
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--~t~~~nSE-SiRDV~ 183 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--STFRSNSE-SIRDVK 183 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc--ccccccch-hhhcee
Confidence 3677788888742 1111122233456789999988889999998888999998643211 12221111 122233
Q ss_pred EcC-CCCEEEEEecCch-hHHHHhhcchhHHHHHHh
Q 017371 272 LAP-DGTFWIAIIKLDA-RRMKILNSSKLIKHVLAA 305 (372)
Q Consensus 272 ~d~-~G~lwva~~~~~~-~~~~~~~~~~~~r~~~~~ 305 (372)
+.+ .++.+++...... ..||+=++....+++.+.
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 322 3566666655432 455555555566666653
No 364
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=46.77 E-value=3.4e+02 Score=27.87 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=45.1
Q ss_pred ccccccceEEccCCcEEE--EeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC-cceEEEecCCCEEEE
Q 017371 159 KLRFANDVVEASDGSLYF--TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVV 235 (372)
Q Consensus 159 ~~~~~~~l~~d~dG~i~v--td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~-~~gi~~~~dg~~l~v 235 (372)
.+...-++.+++|+++.. -|. .+...-.|...|..+|+.. .+.+.. .-+++|..|++.+|+
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~--------------~G~e~y~lr~kdL~tg~~~--~d~i~~~~~~~~Wa~d~~~lfY 190 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDV--------------LGDEQYTLRFKDLATGEEL--PDEITNTSGSFAWAADGKTLFY 190 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEec--------------ccccEEEEEEEeccccccc--chhhcccccceEEecCCCeEEE
Confidence 344455677888887544 222 1223335666677766542 233333 457889999998888
Q ss_pred EeCCC----CeEEEEEccCC
Q 017371 236 CESWK----FRCRKYWLKGE 251 (372)
Q Consensus 236 ~~~~~----~~i~~~~~~g~ 251 (372)
+.... .+|++..+.++
T Consensus 191 t~~d~~~rp~kv~~h~~gt~ 210 (682)
T COG1770 191 TRLDENHRPDKVWRHRLGTP 210 (682)
T ss_pred EEEcCCCCcceEEEEecCCC
Confidence 76533 35666665543
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=46.63 E-value=2.3e+02 Score=25.92 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=38.6
Q ss_pred CeEEEEeCCCC-----eEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC-CcceeeeccCCCCCCceeE
Q 017371 199 GQLLKYDPSSN-----ITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNIN 271 (372)
Q Consensus 199 g~v~~~d~~t~-----~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~g~p~~i~ 271 (372)
|+|+.|+.... +.+.+... ...| -.++.+-++.++++. +.+|..|+++..+ .... .+.+ .+-....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~-V~ai~~~~~~lv~~~--g~~l~v~~l~~~~~l~~~-~~~~-~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP-VTAICSFNGRLVVAV--GNKLYVYDLDNSKTLLKK-AFYD-SPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS--EEEEEEETTEEEEEE--TTEEEEEEEETTSSEEEE-EEE--BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc-ceEhhhhCCEEEEee--cCEEEEEEccCcccchhh-heec-ceEEEEEEe
Confidence 77777776542 44443321 2222 122334355566664 4678888887654 2222 2221 111233444
Q ss_pred EcCCCCEEEEEec
Q 017371 272 LAPDGTFWIAIIK 284 (372)
Q Consensus 272 ~d~~G~lwva~~~ 284 (372)
.-. ..+++++..
T Consensus 137 ~~~-~~I~vgD~~ 148 (321)
T PF03178_consen 137 VFK-NYILVGDAM 148 (321)
T ss_dssp EET-TEEEEEESS
T ss_pred ccc-cEEEEEEcc
Confidence 332 267777754
No 366
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=46.46 E-value=3.2e+02 Score=27.44 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=55.4
Q ss_pred CeEEcCCCCEEEEeCCC----c--EEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371 122 GLTSTKEGHLIICDNAN----G--LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 194 (372)
Q Consensus 122 gl~~d~dG~l~v~~~~~----g--v~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~ 194 (372)
..+..|.|+-+..-+++ . .+.+..++ .-.+...++. .+.|.+...|.|+..+.-.-
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l-------------- 512 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAAL-------------- 512 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEe--------------
Confidence 67778988755443322 1 33333222 2222222222 47789999999986663210
Q ss_pred ccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeC
Q 017371 195 GKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES 238 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~ 238 (372)
....|.+..||.+-...+... ......+-+.|+|.|+++.-+.+
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 124677888987632333322 12334567899999986665544
No 367
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=45.51 E-value=2.6e+02 Score=27.21 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred cEEEcCCCcEEEEe-c--------------CCeEEEEeCCceE-------------------EEEecCCCcccCeEEcCC
Q 017371 83 DASMDKNGVIYTAT-R--------------DGWIKRLQDGTWV-------------------NWKFIDSQTLVGLTSTKE 128 (372)
Q Consensus 83 ~i~~d~~G~l~v~~-~--------------~g~i~~~~~g~~~-------------------~~~~~~~~p~~gl~~d~d 128 (372)
+|+.+.+|.+|+=+ . .-.|+||..|+.+ .+-..++.-. -+.+-.+
T Consensus 279 ~i~~~enGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD~~Yffnle~~sgg~~~~~~~yIG~~kF-ll~~~~~ 357 (435)
T PF14298_consen 279 GIWKDENGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFDKSYFFNLEAKSGGYKFFRVWYIGNNKF-LLQMYDK 357 (435)
T ss_pred eeeEeCCCCEEEEcCcccccccccccccCCccEEEEECCCCcccCcceEeeeecccCCcceEEEEEecCCEE-EEEEecc
Q ss_pred CCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCC---eEEE
Q 017371 129 GHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG---QLLK 203 (372)
Q Consensus 129 G~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g---~v~~ 203 (372)
..---....+.+..++ .++ +..+ ...|.........-.+-.+|.+|+.... ..| .||+
T Consensus 358 ~~~~~~~~~~~laI~d~~~kt~t~V-~glP~~~is~~~~~~~ve~G~aYi~Vtt----------------~~g~~~~IY~ 420 (435)
T PF14298_consen 358 ALTGTYSDAKKLAIFDVSNKTFTWV-TGLPADLISGFGNAPYVENGKAYIPVTT----------------EDGSDPYIYK 420 (435)
T ss_pred cccccCCccceEEEEEccCceeEEe-ccCChhhccccccceEeeCCEEEEEEee----------------cCCCceeEEE
Q ss_pred EeCCCCeEEE
Q 017371 204 YDPSSNITTL 213 (372)
Q Consensus 204 ~d~~t~~~~~ 213 (372)
+||.+++.+.
T Consensus 421 iDp~TatAtK 430 (435)
T PF14298_consen 421 IDPATATATK 430 (435)
T ss_pred EcCccccccc
No 368
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=45.46 E-value=2.5e+02 Score=25.94 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=70.3
Q ss_pred CeEEEEeCC-CCeEEEEeCCccCcceEE-EecC-CCEEEEEeC-CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371 199 GQLLKYDPS-SNITTLVADGFYFANGVA-LSRD-EDYVVVCES-WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 274 (372)
Q Consensus 199 g~v~~~d~~-t~~~~~~~~~~~~~~gi~-~~~d-g~~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~ 274 (372)
++|+.|.-. .-+.....+...+|+|++ +.|- ++.+++.-. ..+.|...++...+.... .++.....-...+++..
T Consensus 113 ~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p-~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 113 NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP-SIINAHDSDIACVALNL 191 (346)
T ss_pred CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc-eEEEcccCceeEEEEcC
Confidence 356666532 122222345566788987 4443 333444332 235677777654333211 22222222345678889
Q ss_pred CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEE-C-CCCcEEEEEECCCCCeeccceeeEEE
Q 017371 275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV-A-EDGTIIRNLVDPTGQLMSFVTSGLQV 352 (372)
Q Consensus 275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~-~-~~g~~~~~~~~~~g~~~~~~t~~~~~ 352 (372)
+|.+..+... .|.++|+ | .+|+.++.+.. |..-..+.++.+.
T Consensus 192 ~Gt~vATaSt----------------------------------kGTLIRIFdt~~g~~l~E~RR--G~d~A~iy~iaFS 235 (346)
T KOG2111|consen 192 QGTLVATAST----------------------------------KGTLIRIFDTEDGTLLQELRR--GVDRADIYCIAFS 235 (346)
T ss_pred CccEEEEecc----------------------------------CcEEEEEEEcCCCcEeeeeec--CCchheEEEEEeC
Confidence 9987766655 4556655 4 56888777653 4434556777776
Q ss_pred CCEEEEE-eCCCCeEEEEe
Q 017371 353 DNHLYVI-SLTSNFIGKVQ 370 (372)
Q Consensus 353 ~g~L~ig-s~~~~~i~~~~ 370 (372)
.+..|++ +.....|-++.
T Consensus 236 p~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CCccEEEEEcCCCeEEEEE
Confidence 4433333 33334444443
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=45.40 E-value=2.6e+02 Score=28.00 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE---EecCCCEEEEEeCC
Q 017371 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESW 239 (372)
Q Consensus 163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~ 239 (372)
+|.+....||.+.++ +..+-++..+|+-..+.........-.|-+. +-..++.++++..+
T Consensus 53 VN~LeWn~dG~lL~S-----------------GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 53 VNCLEWNADGELLAS-----------------GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred ecceeecCCCCEEee-----------------cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Q ss_pred CCeEEEEEccCCCCcceeeeccCCCC-------CCceeEEcCCC--CEEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371 240 KFRCRKYWLKGERKGKLETFAENLPG-------APDNINLAPDG--TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 310 (372)
Q Consensus 240 ~~~i~~~~~~g~~~~~~~~~~~~~~g-------~p~~i~~d~~G--~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~ 310 (372)
+..|..|+++..+.+.-..-...... ..-.|+..++| .+|.+.-.
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED-------------------------- 169 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED-------------------------- 169 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------------------------
Q ss_pred cccccCCCceEEEEEC
Q 017371 311 SQFITLGGGAHLIHVA 326 (372)
Q Consensus 311 ~~~~~~~~~~~v~~~~ 326 (372)
|.+.++|
T Consensus 170 ---------GtirQyD 176 (758)
T KOG1310|consen 170 ---------GTIRQYD 176 (758)
T ss_pred ---------cceeeec
No 370
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=44.13 E-value=2.3e+02 Score=25.16 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=23.5
Q ss_pred EEEEeCCCCeEEEEe-CCc---cCcceEEEecCCCEEEEEeCCC--Ce-E-EEEEccC
Q 017371 201 LLKYDPSSNITTLVA-DGF---YFANGVALSRDEDYVVVCESWK--FR-C-RKYWLKG 250 (372)
Q Consensus 201 v~~~d~~t~~~~~~~-~~~---~~~~gi~~~~dg~~l~v~~~~~--~~-i-~~~~~~g 250 (372)
|-++||.+-+++..- ..+ ...+++.+. | .||+.++.. +. | +.|+..+
T Consensus 149 ~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC--G-vLY~v~S~~~~~~~i~yaydt~~ 203 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNTTLPKRSAGNAFMIC--G-VLYVVHSYNCTHTQISYAYDTTT 203 (249)
T ss_pred eeccCHHHhheeeeeccccCCCCcCceEEEe--e-eeEEEeccccCCceEEEEEEcCC
Confidence 468888665554432 222 223444444 3 377776643 22 3 4555543
No 371
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=43.13 E-value=59 Score=29.13 Aligned_cols=68 Identities=19% Similarity=0.053 Sum_probs=42.3
Q ss_pred cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCEEEEEeCCC
Q 017371 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK 240 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~ 240 (372)
..+++.+-+|++|..|- ..++|+..|+=.+.+.--+.. .-..-|.++|+||-+ +..+.+.+
T Consensus 253 Gv~gvrIRpD~KIlATA-----------------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATA-----------------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKD 314 (323)
T ss_pred CccceEEccCCcEEeec-----------------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence 46789999999998863 245566555544444322221 123457899999954 66666666
Q ss_pred CeEEEEE
Q 017371 241 FRCRKYW 247 (372)
Q Consensus 241 ~~i~~~~ 247 (372)
.+|--+.
T Consensus 315 ~rISLWk 321 (323)
T KOG0322|consen 315 ARISLWK 321 (323)
T ss_pred ceEEeee
Confidence 6665443
No 372
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.50 E-value=5.3e+02 Score=28.29 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=34.7
Q ss_pred ccCCCeEEEEeCCCCeEEEEeCCcc----C--cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc
Q 017371 195 GKPHGQLLKYDPSSNITTLVADGFY----F--ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK 255 (372)
Q Consensus 195 ~~~~g~v~~~d~~t~~~~~~~~~~~----~--~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~ 255 (372)
+..+|.|..+|......+.+.+... . -..+.++++.. ++.+.+. ..|..|++.|+++..
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcc
Confidence 3467888888876422222221111 1 23466777765 7777665 678889988875443
No 373
>PLN02193 nitrile-specifier protein
Probab=40.31 E-value=3.7e+02 Score=26.40 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=66.2
Q ss_pred eEEEEe--CCceEEEEecCCCcc---cCeEE-cCCCCEEEEeCC------CcEEEEc-CCC-cEEEeeecCCcccccccc
Q 017371 100 WIKRLQ--DGTWVNWKFIDSQTL---VGLTS-TKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFAND 165 (372)
Q Consensus 100 ~i~~~~--~g~~~~~~~~~~~p~---~gl~~-d~dG~l~v~~~~------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~ 165 (372)
.++++| ..+|+........|. .+.+. .-++.|||.... +.++++| .+. .+.+......+..+.-..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 477888 555654332211221 02221 235788887432 2477888 455 554432211111122223
Q ss_pred eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCc---ceEEEecCCCEEEEEeCC-
Q 017371 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFA---NGVALSRDEDYVVVCESW- 239 (372)
Q Consensus 166 l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~---~gi~~~~dg~~l~v~~~~- 239 (372)
++. -+++||+.-... .......+++||+.+.+++.+... ...+ .+++. -+++ +|+..-.
T Consensus 274 ~~~-~~~~iYv~GG~~------------~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~ 338 (470)
T PLN02193 274 MAA-DEENVYVFGGVS------------ATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFN 338 (470)
T ss_pred EEE-ECCEEEEECCCC------------CCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCC
Confidence 333 467899842110 001124588999998887765431 1111 12222 2454 6665321
Q ss_pred ---CCeEEEEEccCC
Q 017371 240 ---KFRCRKYWLKGE 251 (372)
Q Consensus 240 ---~~~i~~~~~~g~ 251 (372)
.+.+++|++...
T Consensus 339 g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 339 GCEVDDVHYYDPVQD 353 (470)
T ss_pred CCccCceEEEECCCC
Confidence 256899998654
No 374
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=39.69 E-value=2.3e+02 Score=23.85 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.4
Q ss_pred EEEEECCCCcEE
Q 017371 321 HLIHVAEDGTII 332 (372)
Q Consensus 321 ~v~~~~~~g~~~ 332 (372)
.+-.-|.+|+++
T Consensus 164 r~r~kd~~g~~~ 175 (179)
T PF07202_consen 164 RVRIKDKDGNVI 175 (179)
T ss_pred cEEEecCCCCEE
Confidence 344444445443
No 375
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=39.58 E-value=62 Score=29.91 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce-----EEEecCCCEEEEEeCCCCeEE
Q 017371 170 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-----VALSRDEDYVVVCESWKFRCR 244 (372)
Q Consensus 170 ~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g-----i~~~~dg~~l~v~~~~~~~i~ 244 (372)
+.+.||+- +|..+.+..-+.-+...|.||.+|.+..+.....+-...-.+ .+++.|+. +++.......|+
T Consensus 304 ~~c~iWfi----rf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 304 PMCDIWFI----RFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW 378 (385)
T ss_pred CccceEEE----EEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Q ss_pred EEE
Q 017371 245 KYW 247 (372)
Q Consensus 245 ~~~ 247 (372)
|++
T Consensus 379 rwd 381 (385)
T KOG1034|consen 379 RWD 381 (385)
T ss_pred EEE
No 376
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=38.44 E-value=4.2e+02 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.012 Sum_probs=15.4
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371 223 GVALSRDEDYVVVCESWKFRCRKYWL 248 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~~~~ 248 (372)
.++|++||..+-+....+.-+..+-+
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeee
Confidence 47889999866555444444444433
No 377
>PRK13614 lipoprotein LpqB; Provisional
Probab=37.98 E-value=4.5e+02 Score=26.72 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=46.0
Q ss_pred EcCCCcEEEEecC--CeEEEEe-CCc--eE-----EEE--ecCCCcccCeEEcCCC-CEEE-Ee-CCCc-EEE--Ec--C
Q 017371 86 MDKNGVIYTATRD--GWIKRLQ-DGT--WV-----NWK--FIDSQTLVGLTSTKEG-HLII-CD-NANG-LHK--VS--E 145 (372)
Q Consensus 86 ~d~~G~l~v~~~~--g~i~~~~-~g~--~~-----~~~--~~~~~p~~gl~~d~dG-~l~v-~~-~~~g-v~~--~~--~ 145 (372)
+|.+|.+|+...+ +.|.++. +|+ .. .+. ...++.+..+.+.+|| ++.+ .. .++. |+. +. .
T Consensus 390 ~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~ 469 (573)
T PRK13614 390 FSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE 469 (573)
T ss_pred ccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC
Confidence 6677888887743 4777776 432 11 111 1123323388888999 4333 31 2221 222 22 3
Q ss_pred CC-cEEEeeecCCcccccccceEEccCCcEEEEe
Q 017371 146 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTV 178 (372)
Q Consensus 146 ~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd 178 (372)
+| ...+.....-.....+.+++.-.++.|.+..
T Consensus 470 ~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 470 DGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred CCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 45 3444322111111345567777777877754
No 378
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=37.35 E-value=3.2e+02 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=37.2
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371 222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 279 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 279 (372)
..+.++|||++++-+....-||.++.+.+.+ + ..........-|+++.+||.+-
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~---~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQK-G---YLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccce-e---EEecccccCceeEEECCCCcee
Confidence 4577999999998888888899988886532 1 1221111124789999999754
No 379
>PLN02193 nitrile-specifier protein
Probab=36.72 E-value=4.2e+02 Score=26.01 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCc--cCcc-eEEEecCCCEEEEEeCCC-----CeEEEEEccC
Q 017371 198 HGQLLKYDPSSNITTLVADGF--YFAN-GVALSRDEDYVVVCESWK-----FRCRKYWLKG 250 (372)
Q Consensus 198 ~g~v~~~d~~t~~~~~~~~~~--~~~~-gi~~~~dg~~l~v~~~~~-----~~i~~~~~~g 250 (372)
...+++||+.+.+++.+.... ..|. +.+....++.+|+..-.+ ..+++|++..
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC
Confidence 356999999988887754321 1121 111222344588765321 3477787754
No 380
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=36.48 E-value=85 Score=17.95 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=17.6
Q ss_pred cCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371 219 YFANGVALSRDEDYVVVCESWKFRCRKY 246 (372)
Q Consensus 219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~ 246 (372)
...+.++++|+++.+..+. .++.|..+
T Consensus 12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vw 38 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGS-SDGTIRVW 38 (39)
T ss_dssp SSEEEEEEETTSSEEEEEE-TTSEEEEE
T ss_pred CcEEEEEEecccccceeeC-CCCEEEEE
Confidence 3456899999988555544 45556554
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.34 E-value=4.5e+02 Score=26.29 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCcEEEEe--cCCeEEEEe--CCc-eEEEEecCCCccc-------CeEEcCCCCEEEEeCCCcEEEEc-C-CCcEEEe--
Q 017371 89 NGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLV-------GLTSTKEGHLIICDNANGLHKVS-E-DGVENFL-- 152 (372)
Q Consensus 89 ~G~l~v~~--~~g~i~~~~--~g~-~~~~~~~~~~p~~-------gl~~d~dG~l~v~~~~~gv~~~~-~-~g~~~l~-- 152 (372)
+-+|..-+ ....|+++| .|+ ++.|......+.. +--+++.+.| |+-...+|+++| + +|...|.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeee
Confidence 33444444 345688988 565 5567543221110 1223344554 554567899999 3 4422222
Q ss_pred eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCC
Q 017371 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDED 231 (372)
Q Consensus 153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~ 231 (372)
....-..-...+.++...+|.|.++ ...|.|..||--....+....++..| ..|.++.||+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~Ivvg------------------S~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVG------------------SLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred eccccccccccceeeecCCceEEEe------------------ecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc
Confidence 1111111122345677788888774 24566777775323334444555554 4678889998
Q ss_pred EEEEE
Q 017371 232 YVVVC 236 (372)
Q Consensus 232 ~l~v~ 236 (372)
+++.+
T Consensus 485 wil~T 489 (644)
T KOG2395|consen 485 WILAT 489 (644)
T ss_pred EEEEe
Confidence 66554
No 382
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=35.92 E-value=3.2e+02 Score=29.22 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=33.6
Q ss_pred CeEEEEeCCCCeEEEE-eCCccCcceEEEecCCCEEEEE---eC--CCCeEEEEEccCCCCcceee
Q 017371 199 GQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVC---ES--WKFRCRKYWLKGERKGKLET 258 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~dg~~l~v~---~~--~~~~i~~~~~~g~~~~~~~~ 258 (372)
++|...|-+....+.+ ...-...-.-+|+|||+++-++ +. ++..|++.++.....+..+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 3666666654444443 2221111234689999988883 22 34568888887654443333
No 383
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.76 E-value=1.2e+02 Score=30.90 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCccEEEcCCC-cEEEEecCCeEEEEe-CC------ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcC
Q 017371 80 HPEDASMDKNG-VIYTATRDGWIKRLQ-DG------TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE 145 (372)
Q Consensus 80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g------~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~ 145 (372)
...++..++|| ++|.|+..|.|.... +- ....+....+... .|-. -++.|.|++..+.++...+
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IV-QlD~-~q~~LLVStl~r~~Lc~tE 197 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIV-QLDY-LQSYLLVSTLTRCILCQTE 197 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceE-Eeec-ccceehHhhhhhhheeecc
Confidence 45678889888 899999999988766 33 1112222222222 2222 3677778776554444443
No 384
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=35.28 E-value=4.8e+02 Score=26.27 Aligned_cols=149 Identities=12% Similarity=0.085 Sum_probs=79.0
Q ss_pred CCCCCCCccEEEcC-CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--
Q 017371 75 EGSVNHPEDASMDK-NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-- 147 (372)
Q Consensus 75 ~g~~~~p~~i~~d~-~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-- 147 (372)
.|...+-.++++.. ++.|+.|+.|..+..|| +|+=..... +....+..++-.+.+.++ ..+.-|..++ .+|
T Consensus 246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~ 323 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC 323 (537)
T ss_pred cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcce
Confidence 45555667777775 34566666788888888 454222211 222213444433444443 2334577777 666
Q ss_pred cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEE
Q 017371 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVAL 226 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~ 226 (372)
+..+.. . ...++.+..+ +.+.|+-+ .++.|..+|+.+++.-....+.... ..+.+
T Consensus 324 l~l~~~--h---~~~V~~v~~~--~~~lvsgs-----------------~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 324 LNLLRG--H---TGPVNCVQLD--EPLLVSGS-----------------YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred EEEecc--c---cccEEEEEec--CCEEEEEe-----------------cCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence 444321 1 1245566665 55555432 4567888888777765555542221 23333
Q ss_pred ecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 227 SRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 227 ~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
+.. + .+++.+.+..|..+++.+.
T Consensus 380 ~~~-~-~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 380 DSE-N-RLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cCc-c-eEEeeeeccceEeecCCch
Confidence 332 4 4445445566877887654
No 385
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.20 E-value=3.2e+02 Score=26.75 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=19.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371 220 FANGVALSRDEDYVVVCESWKFRCRKYWLKG 250 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g 250 (372)
.+.-++++|.++++..-+.++ +.++.+++
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~gk--i~~~~l~N 387 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQGK--IRLAQLEN 387 (733)
T ss_pred CcceeeeCcccchheeecCCc--eEEEEecC
Confidence 456678999998888776554 55555543
No 386
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=3.5e+02 Score=24.31 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=29.5
Q ss_pred CCCeEEEEeCC-CCeEEEEe--CCccCcceEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371 197 PHGQLLKYDPS-SNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 248 (372)
Q Consensus 197 ~~g~v~~~d~~-t~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~ 248 (372)
+.|+|+..++. .+.+.... +--..--++++++......++-.+++.+..|+.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 56777777763 22222211 001112368888876556666677777887774
No 387
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=33.87 E-value=1e+02 Score=18.00 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=12.4
Q ss_pred eEEEecCCCEEEEEeCC
Q 017371 223 GVALSRDEDYVVVCESW 239 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~ 239 (372)
...++|||++++++...
T Consensus 13 ~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEE-TTSSEEEEEEEC
T ss_pred CEEEecCCCEEEEEecC
Confidence 56799999988887643
No 388
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.32 E-value=4.8e+02 Score=25.64 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=70.9
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC---------------CCCCCceeEEcCCC--CEEEEEec
Q 017371 222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN---------------LPGAPDNINLAPDG--TFWIAIIK 284 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~---------------~~g~p~~i~~d~~G--~lwva~~~ 284 (372)
..+.++|||+.+|+-.. +.+..+.++....... ...+. +.|.-.=+..++|| .-|.--..
T Consensus 224 ~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred HhhEECCCCCEEEEecC--CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 45778999999999864 5677777764322111 11111 11222336678888 34654433
Q ss_pred CchhHHHHhhcchhHHHH-HHhc-CccccccccCCCceEEEEECCCCcEEEEEECCCCCe-----eccceeeEEECCEEE
Q 017371 285 LDARRMKILNSSKLIKHV-LAAY-PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL-----MSFVTSGLQVDNHLY 357 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~r~~-~~~~-p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~-----~~~~t~~~~~~g~L~ 357 (372)
. ..|.+.++ ..++ |..++.+-+-+...+.+.++++|+.-..+....... ...+.-+......-|
T Consensus 301 ~---------~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 301 D---------GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred C---------CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence 1 12322222 1222 334443333344455667788888765444332211 112333333445566
Q ss_pred EEeCCCCeEEEEeCC
Q 017371 358 VISLTSNFIGKVQLS 372 (372)
Q Consensus 358 igs~~~~~i~~~~~~ 372 (372)
+.+.++..|.++.+|
T Consensus 372 Ll~e~~gki~~~~l~ 386 (733)
T COG4590 372 LLSEDQGKIRLAQLE 386 (733)
T ss_pred heeecCCceEEEEec
Confidence 666777777776654
No 389
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.26 E-value=6.7e+02 Score=27.29 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCcEEEEecCCeEEEE----e--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcC
Q 017371 89 NGVIYTATRDGWIKRL----Q--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE 145 (372)
Q Consensus 89 ~G~l~v~~~~g~i~~~----~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~ 145 (372)
...++++..+|.|..+ + +..++.+....+... ++++.||+.+.+..++ ..++.++.
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-AASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE-EEEECCCcCEEEEEeCCCEEEEEec
Confidence 3478888899999988 4 445666655556667 8899999986655444 44666653
No 390
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.06 E-value=4.5e+02 Score=25.24 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.5
Q ss_pred ceEEEecCCCEEEEE
Q 017371 222 NGVALSRDEDYVVVC 236 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~ 236 (372)
.|+++++|+++||-.
T Consensus 203 Eglait~d~~~L~~~ 217 (391)
T COG4222 203 EGLAITPDGKKLYAL 217 (391)
T ss_pred eeEEecCCCceEEEE
Confidence 478999999988865
No 391
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=33.00 E-value=1.2e+02 Score=18.65 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=19.3
Q ss_pred ceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371 346 VTSGLQVDNHLYVISLTSNFIGKVQLS 372 (372)
Q Consensus 346 ~t~~~~~~g~L~igs~~~~~i~~~~~~ 372 (372)
...+...++.+|++... ..+.++|++
T Consensus 4 a~~v~v~g~yaYva~~~-~Gl~IvDIS 29 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGN-NGLVIVDIS 29 (42)
T ss_pred EEEEEEECCEEEEEeCC-CCEEEEECC
Confidence 45677788999999644 667777764
No 392
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.87 E-value=5.5e+02 Score=26.25 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCCcEEEeeecCCccccc
Q 017371 88 KNGVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDGVENFLSYVNGSKLRF 162 (372)
Q Consensus 88 ~~G~l~v~~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g~~~l~~~~~~~~~~~ 162 (372)
...-+.+|+.|.+|..|+ ++ ++..|..-..... .|++.|..=..++.++. -+..++ +.+... ...++|- .++
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~-~qtfeGH-~Hy 142 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWAC-EQTFEGH-EHY 142 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceee-eeEEcCc-ceE
Confidence 345677777889898888 33 4566655445556 88888877655555443 355566 444111 1122333 368
Q ss_pred ccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371 163 ANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 241 (372)
Q Consensus 163 ~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~ 241 (372)
+..+++.|.. +-+.+-+ ...+-.||.+-...-.++ +......-|.+.+-+.|+.=|.....++
T Consensus 143 VMqv~fnPkD~ntFaS~s---------------LDrTVKVWslgs~~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASAS---------------LDRTVKVWSLGSPHPNFT-LEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred EEEEEecCCCccceeeee---------------ccccEEEEEcCCCCCcee-eeccccCcceEEeccCCCcceEEecCCC
Confidence 8899999865 4444422 112233444422211111 1222345577777666554454444455
Q ss_pred eEEEEE
Q 017371 242 RCRKYW 247 (372)
Q Consensus 242 ~i~~~~ 247 (372)
...++|
T Consensus 207 ~tiKvW 212 (794)
T KOG0276|consen 207 LTIKVW 212 (794)
T ss_pred ceEEEe
Confidence 555544
No 393
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=32.74 E-value=4e+02 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=15.2
Q ss_pred CCCEEEEEeCCC--CeEEEEEccC
Q 017371 229 DEDYVVVCESWK--FRCRKYWLKG 250 (372)
Q Consensus 229 dg~~l~v~~~~~--~~i~~~~~~g 250 (372)
..+.||+|.+.. ..++.+.++.
T Consensus 70 ~~~~Li~CGT~~~~p~C~~~~l~~ 93 (433)
T PF01403_consen 70 NDNRLIVCGTNAFQPICRLRNLSN 93 (433)
T ss_dssp SSSEEEEEESTTTSCEEEEEETTT
T ss_pred CCCEEEEcCccccccCccEecccc
Confidence 333799999865 5666677654
No 394
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=65 Score=31.21 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.5
Q ss_pred CcccccccceEEccCCcEEEEeC
Q 017371 157 GSKLRFANDVVEASDGSLYFTVS 179 (372)
Q Consensus 157 ~~~~~~~~~l~~d~dG~i~vtd~ 179 (372)
+..+.-+.+|.+|.||..|++|.
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdv 485 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDV 485 (501)
T ss_pred CCceecCCcceecCCCcEEeecc
Confidence 34567888999999999999976
No 395
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=31.27 E-value=1.7e+02 Score=28.00 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=16.2
Q ss_pred CcceEEEecCCCEEEEEeC
Q 017371 220 FANGVALSRDEDYVVVCES 238 (372)
Q Consensus 220 ~~~gi~~~~dg~~l~v~~~ 238 (372)
.|+=+.+|-||++|||+++
T Consensus 390 GPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CceeEEeccCCcEEEEEch
Confidence 3666889999999999986
No 396
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.68 E-value=5.7e+02 Score=25.37 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=92.1
Q ss_pred CCCccEEEcCCC-cEEEEecCCeEEEEe--C-CceEEEEe-cCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC---c
Q 017371 79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG---V 148 (372)
Q Consensus 79 ~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~-g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g---~ 148 (372)
..+.++...++| .|-+|..+|.|..+| . ..++.... ...+.- .|+.. +.++.+....| +...| ... .
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-SLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-EEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 567778888777 667788889888888 2 22333222 122222 44443 44444433322 44454 322 2
Q ss_pred EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEe
Q 017371 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALS 227 (372)
Q Consensus 149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~ 227 (372)
+.+ .+- -..+.++...+||+...+ +.-++.++.+|..+.+........ ..--.++|+
T Consensus 295 ~~~----~~H-~qeVCgLkws~d~~~lAS-----------------GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 295 STL----QGH-RQEVCGLKWSPDGNQLAS-----------------GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred hhh----hcc-cceeeeeEECCCCCeecc-----------------CCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 211 111 134568888888886554 224566777776433333333332 223467888
Q ss_pred cCCCEEEEEeCC-CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371 228 RDEDYVVVCESW-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 228 ~dg~~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 284 (372)
|-...|+.+..+ .+++++||--. .+....-. .......++...+..+=.+++.+
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTN--TGARIDSV-DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcC--CCcEeccc-ccCCceeeEEEcCCCCEEEEecC
Confidence 866656665543 36777776321 11111111 11224556777776655555544
No 397
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=29.07 E-value=2.4e+02 Score=25.57 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-------eEEEecCCCEEEEEe
Q 017371 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-------GVALSRDEDYVVVCE 237 (372)
Q Consensus 165 ~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-------gi~~~~dg~~l~v~~ 237 (372)
.++..++|++... -......+.....++..+...-..|. -++|+||+. +++..
T Consensus 2 ~~~~~~~Gk~lAi-------------------~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAI-------------------LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYA 61 (282)
T ss_pred ceeecCCCcEEEE-------------------EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEE
Q ss_pred CCCCeEEEEEccC
Q 017371 238 SWKFRCRKYWLKG 250 (372)
Q Consensus 238 ~~~~~i~~~~~~g 250 (372)
..++.|..|++.|
T Consensus 62 ~S~G~i~vfdl~g 74 (282)
T PF15492_consen 62 ESTGTIRVFDLMG 74 (282)
T ss_pred cCCCeEEEEeccc
No 398
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=2.4e+02 Score=26.96 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=46.2
Q ss_pred ccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371 161 RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 239 (372)
Q Consensus 161 ~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~ 239 (372)
.++.+|++.+..+ +... ......|-.+|..+..+..-......+...+|+-|....+.+...
T Consensus 194 ~~IrdlafSp~~~GLl~~-----------------asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGL-----------------ASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred hhhhhhccCccccceeee-----------------eccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEecc
Confidence 4677888887655 2221 112345666676654433222233556678899888777777778
Q ss_pred CCeEEEEEccC
Q 017371 240 KFRCRKYWLKG 250 (372)
Q Consensus 240 ~~~i~~~~~~g 250 (372)
++.|+.||+..
T Consensus 257 nG~VlvyD~R~ 267 (463)
T KOG1645|consen 257 NGMVLVYDMRQ 267 (463)
T ss_pred CceEEEEEccC
Confidence 88999999864
No 399
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=28.35 E-value=4.3e+02 Score=23.55 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.2
Q ss_pred ceEEccCCcEEEE
Q 017371 165 DVVEASDGSLYFT 177 (372)
Q Consensus 165 ~l~~d~dG~i~vt 177 (372)
.+.+++||.|++.
T Consensus 132 ~i~I~~dG~I~~~ 144 (252)
T PRK12641 132 NLKISSNGVITSI 144 (252)
T ss_pred cEEECCCceEEEE
Confidence 6888888988764
No 400
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.34 E-value=7.1e+02 Score=26.10 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=32.2
Q ss_pred cEEEEecCCeEEEEe---CCceEEEEecCCCcccCeEEcC-CCCEEEEeCCCc-EEEEc
Q 017371 91 VIYTATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS 144 (372)
Q Consensus 91 ~l~v~~~~g~i~~~~---~g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~~g-v~~~~ 144 (372)
.|..|+.||.|..|| +.....+........ .+.+.| .++.|++....| |..+|
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR-DV~fsp~~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR-DVKFSPGYGNKFASIHDSGYLQLWD 205 (839)
T ss_pred EEEecCCCceEEEEeeecccccccccccchhhh-ceeeccCCCceEEEecCCceEEEee
Confidence 344556899999998 333333333333445 677764 467777776667 44566
No 401
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=28.29 E-value=81 Score=21.36 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=13.1
Q ss_pred CeEEEEeCCCCeEEEE
Q 017371 199 GQLLKYDPSSNITTLV 214 (372)
Q Consensus 199 g~v~~~d~~t~~~~~~ 214 (372)
=.||+||+++++++.+
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 3689999999988764
No 402
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=27.07 E-value=3.3e+02 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.6
Q ss_pred ceEEccCCcEEE
Q 017371 165 DVVEASDGSLYF 176 (372)
Q Consensus 165 ~l~~d~dG~i~v 176 (372)
.+.+++||.|+.
T Consensus 137 ~~~I~~dG~i~~ 148 (238)
T PRK12690 137 SVAVGADGTLSA 148 (238)
T ss_pred eEEECCCCeEEE
Confidence 688888998865
No 403
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=26.66 E-value=5.6e+02 Score=24.37 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc
Q 017371 75 EGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS 144 (372)
Q Consensus 75 ~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~ 144 (372)
.|...-..++.+++.+.+|-++.|+.|.++| .| ..... .++.++..+...+..+|.++..... +..+|
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeee--ecCcceeEeecccccceeeecCCCCceeecC
Confidence 4555556678888888999999999999999 33 33322 2234443777778788888765534 55566
No 404
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.27 E-value=3.1e+02 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=13.8
Q ss_pred cccceEEccCCcEEEEe
Q 017371 162 FANDVVEASDGSLYFTV 178 (372)
Q Consensus 162 ~~~~l~~d~dG~i~vtd 178 (372)
.+++|++|++|+..+|.
T Consensus 295 ~V~siAv~~~G~YMaTt 311 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATT 311 (545)
T ss_pred CcceEEECCCCcEEeec
Confidence 46789999999977763
No 405
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=26.04 E-value=7.4e+02 Score=25.49 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=31.8
Q ss_pred cccCceEecCCCCCCCccEEE--------cCCCcEEEEecCCeEEEEe--CCc
Q 017371 66 QLQDFIKVGEGSVNHPEDASM--------DKNGVIYTATRDGWIKRLQ--DGT 108 (372)
Q Consensus 66 ~l~~~~~~~~g~~~~p~~i~~--------d~~G~l~v~~~~g~i~~~~--~g~ 108 (372)
.|+.++.+..|.+..|++.-. --++.||+.+...+++.+| +|+
T Consensus 183 nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGk 235 (773)
T COG4993 183 NLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGK 235 (773)
T ss_pred ccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCCc
Confidence 466788888888888877211 1257899999888999999 554
No 406
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.02 E-value=5.3e+02 Score=23.81 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccCceEecCCCCCCCccEEEcC-CCcEEEEe-cCCeEEEEe----CCceEEEEecCCCcccCeEEcCCC-CEEEEeCCCc
Q 017371 67 LQDFIKVGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ----DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANG 139 (372)
Q Consensus 67 l~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~----~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~~g 139 (372)
++..-.+..-+-..-..|++.| ...+..+. .||.|..|+ +--.-.-......|.+.+++..|| .+|.+..+..
T Consensus 16 ~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 16 PNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred cccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Q ss_pred EEEEc-CCC-cEEEeeecCCcccccccceEEccCCc--EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371 140 LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (372)
Q Consensus 140 v~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~--i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~ 215 (372)
+..+| .+| ...+.......+ .+.+-+... +.+|-+ .+-.|-.+|+..... .
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~pvk-----t~~wv~~~~~~cl~TGS-----------------WDKTlKfWD~R~~~p---v 150 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDAPVK-----TCHWVPGMNYQCLVTGS-----------------WDKTLKFWDTRSSNP---V 150 (347)
T ss_pred eEEEEccCCCeeeeeeccccee-----EEEEecCCCcceeEecc-----------------cccceeecccCCCCe---e
Q ss_pred CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhc
Q 017371 216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNS 295 (372)
Q Consensus 216 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~ 295 (372)
..+.-|..+--..-..-+.+..+.+..|..|.+.++ ..+.......+.-....++.-.|+..+ +..+
T Consensus 151 ~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~-~te~k~~~SpLk~Q~R~va~f~d~~~~-alGs----------- 217 (347)
T KOG0647|consen 151 ATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP-PTEFKRIESPLKWQTRCVACFQDKDGF-ALGS----------- 217 (347)
T ss_pred eeeeccceeeehhccCceeEEEecCCcEEEEEcCCC-cchhhhhcCcccceeeEEEEEecCCce-Eeee-----------
Q ss_pred chhHHHHHHhcCccccccccCCCceEEEEECC---CCcEEEEEECCCCCeeccceee
Q 017371 296 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE---DGTIIRNLVDPTGQLMSFVTSG 349 (372)
Q Consensus 296 ~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~---~g~~~~~~~~~~g~~~~~~t~~ 349 (372)
.+.-..|.-+|. .-+....-|...+.....+..|
T Consensus 218 --------------------iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 218 --------------------IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred --------------------ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
No 407
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=25.94 E-value=4.8e+02 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCeEEEEeCCCCeEE-EE-eCC--c--------cCcceEEEecCCCEEEEE
Q 017371 197 PHGQLLKYDPSSNITT-LV-ADG--F--------YFANGVALSRDEDYVVVC 236 (372)
Q Consensus 197 ~~g~v~~~d~~t~~~~-~~-~~~--~--------~~~~gi~~~~dg~~l~v~ 236 (372)
....|+|||..++.+. .. +.+ . ..-+.+.+.-|++.||+.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 4568999999887766 22 111 1 112346666677768875
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=24.09 E-value=2e+02 Score=18.17 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=20.2
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371 223 GVALSRDEDYVVVCESWKFRCRKYWLKGE 251 (372)
Q Consensus 223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~ 251 (372)
-++++|..+ |+...+.++.|..|.+++.
T Consensus 16 ~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 16 CMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 567889888 5555556778888887654
No 409
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=23.76 E-value=2.4e+02 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=14.3
Q ss_pred ceEEEecCCCEEEEEeCCCCe
Q 017371 222 NGVALSRDEDYVVVCESWKFR 242 (372)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~~~ 242 (372)
.|++++|+.+..+-+.....+
T Consensus 43 ~Gla~Dpetge~i~~~g~~~r 63 (119)
T PF14251_consen 43 KGLAVDPETGEVIPCRGKVKR 63 (119)
T ss_pred ccceeCCCCCCEEEEecCCCC
Confidence 488899887767766644333
No 410
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=23.71 E-value=3.5e+02 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=15.8
Q ss_pred CCCceeEEcCCCCEEEEEe
Q 017371 265 GAPDNINLAPDGTFWIAII 283 (372)
Q Consensus 265 g~p~~i~~d~~G~lwva~~ 283 (372)
+.|--+.++.+|++|+...
T Consensus 82 ~ep~~l~~l~dgri~~ts~ 100 (123)
T PF11763_consen 82 SEPLDLHTLSDGRIWFTSN 100 (123)
T ss_pred CCcEEEEEecCCcEEEEcc
Confidence 3477788999999999984
No 411
>PRK13613 lipoprotein LpqB; Provisional
Probab=23.57 E-value=8.1e+02 Score=25.10 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=76.7
Q ss_pred CCccEEEcCCCcEEEEe-cCCeEEEEe----CCc----eEEEEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEc-CC
Q 017371 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ----DGT----WVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVS-ED 146 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~----~g~----~~~~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~-~~ 146 (372)
.+.+.++..+|....+- .++..+.+. .+. .+.+.. +..+..-.+|.+|.+|+++.. ..++++- .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGDLWVVDRDPADPRLLWLLQGD 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCCEEEecCCCCCceEEEEEcCC
Confidence 46678888877655443 344444432 222 112211 222225558889999999653 2345554 56
Q ss_pred C-cEEEee-ecCCcccccccceEEccCC-cEEE-EeCCCCCCCcccccccccccCCCeEE--EE-eCCCCeEE-----EE
Q 017371 147 G-VENFLS-YVNGSKLRFANDVVEASDG-SLYF-TVSSSKYLPHEYCLDILEGKPHGQLL--KY-DPSSNITT-----LV 214 (372)
Q Consensus 147 g-~~~l~~-~~~~~~~~~~~~l~~d~dG-~i~v-td~~~~~~~~~~~~~~~~~~~~g~v~--~~-d~~t~~~~-----~~ 214 (372)
| ...+.. ...+ ..+..+.+.+|| ++-+ .+. ...++|+ .+ ....|+.+ .+
T Consensus 442 G~~~~V~~~~l~g---~~I~~lrvSrDG~RvAvv~~~----------------~g~~~v~va~V~R~~~G~~~l~~~~~l 502 (599)
T PRK13613 442 GEPVEVRTPELDG---HRVVAVRVARDGVRVALIVEK----------------DGRRSLQIGRIVRDAKAVVSVEEFRSL 502 (599)
T ss_pred CcEEEeeccccCC---CEeEEEEECCCccEEEEEEec----------------CCCcEEEEEEEEeCCCCcEEeeccEEe
Confidence 6 322221 2222 246778888888 3333 221 1112222 11 11223322 22
Q ss_pred eCCccCcceEEEecCCCEEEEEe---CCCCeEEEEEccCC
Q 017371 215 ADGFYFANGVALSRDEDYVVVCE---SWKFRCRKYWLKGE 251 (372)
Q Consensus 215 ~~~~~~~~gi~~~~dg~~l~v~~---~~~~~i~~~~~~g~ 251 (372)
...+..+..++|..++. |.|.. .....++.+.++|.
T Consensus 503 ~~~l~~v~~~~W~~~~s-L~Vlg~~~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 503 APELEDVTDMSWAGDSQ-LVVLGREEGGVQQARYVQVDGS 541 (599)
T ss_pred ccCCCccceeEEcCCCE-EEEEeccCCCCcceEEEecCCc
Confidence 33455567888887776 76632 22467888898875
No 412
>PRK13614 lipoprotein LpqB; Provisional
Probab=22.67 E-value=8.2e+02 Score=24.88 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=80.5
Q ss_pred EEecCCeEEEEeCCceEEEEecC---C-CcccCeEEcCCCCEEEEeCCCc--EEEEcCCC-cEEEeeecCCcccccccce
Q 017371 94 TATRDGWIKRLQDGTWVNWKFID---S-QTLVGLTSTKEGHLIICDNANG--LHKVSEDG-VENFLSYVNGSKLRFANDV 166 (372)
Q Consensus 94 v~~~~g~i~~~~~g~~~~~~~~~---~-~p~~gl~~d~dG~l~v~~~~~g--v~~~~~~g-~~~l~~~~~~~~~~~~~~l 166 (372)
++..+|++.+++++..+...... + .+. ..++.++|....+-...+ ++.....+ .+.+. .+..+..|
T Consensus 316 ~~~~~G~l~~~~~~~~~pv~g~~g~~~~~~~-s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~---~g~~Lt~P--- 388 (573)
T PRK13614 316 IGVSDGELVRYENGQISPLPDIQSVAGLGPA-SPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT---SGSTLTRP--- 388 (573)
T ss_pred EEecCCeEEEecCCCcccCCCccCcCccccc-ceeecCCCceEEEecCCCcEEEEecCCCcceeee---cCCCccCC---
Confidence 44457788887744433322211 1 334 567788887644433322 44334333 33322 23223333
Q ss_pred EEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeE------EEEeCCccC--cceEEEecCCCEEEEEe
Q 017371 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT------TLVADGFYF--ANGVALSRDEDYVVVCE 237 (372)
Q Consensus 167 ~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~------~~~~~~~~~--~~gi~~~~dg~~l~v~~ 237 (372)
.+|.+|.+|..+.+ ..++|.++..+. ++. ..-...+.. -..+.+++||-.+.+.-
T Consensus 389 S~d~~g~vWtv~~g----------------~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~ 452 (573)
T PRK13614 389 SFSPQDWVWTAGPG----------------GNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVIS 452 (573)
T ss_pred cccCCCCEEEeeCC----------------CCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEE
Confidence 57888999986542 334777776531 111 111122221 34577999998777654
Q ss_pred CCC--CeEEEEEccCCCCcceeeeccC--C--CCCCceeEEcCCCCEEEEEec
Q 017371 238 SWK--FRCRKYWLKGERKGKLETFAEN--L--PGAPDNINLAPDGTFWIAIIK 284 (372)
Q Consensus 238 ~~~--~~i~~~~~~g~~~~~~~~~~~~--~--~g~p~~i~~d~~G~lwva~~~ 284 (372)
..+ .+|+.--+....-+....+... + .+-+..+..-.++.|-|....
T Consensus 453 ~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~ 505 (573)
T PRK13614 453 EQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKAS 505 (573)
T ss_pred EeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEecc
Confidence 223 2355422211111221111111 0 123455666667777777643
No 413
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=22.45 E-value=7.2e+02 Score=24.13 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred EeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371 134 CDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (372)
Q Consensus 134 ~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~ 211 (372)
+..++-|++++ +.. ...+... .+++-+.-..+++.+.|.+|+ |+-.-..-.-...--.--+|.+|..+.++
T Consensus 94 T~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~------fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 94 THVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWL------FGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred EEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEE------eccccCCcchhhhhhhhheeeeeeccchh
Q ss_pred EEEe-CCccCcc----------------eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce--eEE
Q 017371 212 TLVA-DGFYFAN----------------GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN--INL 272 (372)
Q Consensus 212 ~~~~-~~~~~~~----------------gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~--i~~ 272 (372)
+.+. .+-+.|. |+.=+ .+.+.|+.+ |+.|++++-+-...+. ....|.--.| +.+
T Consensus 167 eql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-nr~y~YyND-----vy~FdLdtykW~Klep-sga~PtpRSGcq~~v 239 (521)
T KOG1230|consen 167 EQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-NRDYIYYND-----VYAFDLDTYKWSKLEP-SGAGPTPRSGCQFSV 239 (521)
T ss_pred eeeccCCCCCCCccceeEEeeeeEEEEcceecC-CCceEEeee-----eEEEeccceeeeeccC-CCCCCCCCCcceEEe
Q ss_pred cCCCCEEE
Q 017371 273 APDGTFWI 280 (372)
Q Consensus 273 d~~G~lwv 280 (372)
.++|.|+|
T Consensus 240 tpqg~i~v 247 (521)
T KOG1230|consen 240 TPQGGIVV 247 (521)
T ss_pred cCCCcEEE
No 414
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.36 E-value=1.9e+02 Score=29.78 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=39.9
Q ss_pred CCCeEEEEeCCCCe-EEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371 197 PHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 275 (372)
Q Consensus 197 ~~g~v~~~d~~t~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~ 275 (372)
..|.|-.+|....+ ++.+...+...-.+.|+|-+.+. ...+....+..++. .+.+-...+. ..++..+-+++.++
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~-a~gStdtd~~iwD~--Rk~Gc~~~~~-s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF-ASGSTDTDLKIWDI--RKKGCSHTYK-SHTRVVDVLRLSPD 165 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe-ccccccccceehhh--hccCceeeec-CCcceeEEEeecCC
Confidence 45566666765443 33333444555667788887544 11111111222222 1222222332 23344566778888
Q ss_pred CCEEEEEec
Q 017371 276 GTFWIAIIK 284 (372)
Q Consensus 276 G~lwva~~~ 284 (372)
|. |++..+
T Consensus 166 Gr-~v~~g~ 173 (825)
T KOG0267|consen 166 GR-WVASGG 173 (825)
T ss_pred Cc-eeeccC
Confidence 84 555544
No 415
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=22.20 E-value=3.3e+02 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=22.8
Q ss_pred ceEEEEECCCCcEEEE--EECCCCCeeccc--eeeEEECCEEEEEeCCCC
Q 017371 319 GAHLIHVAEDGTIIRN--LVDPTGQLMSFV--TSGLQVDNHLYVISLTSN 364 (372)
Q Consensus 319 ~~~v~~~~~~g~~~~~--~~~~~g~~~~~~--t~~~~~~g~L~igs~~~~ 364 (372)
.|.|+++..+ +.+-- +.+-+|...... .=++..+++||+|+....
T Consensus 73 TGiVyeI~~~-~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~Gke 121 (291)
T PF06079_consen 73 TGIVYEIKGD-KAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSIGKE 121 (291)
T ss_dssp T-EEEEEETT-EEEEEEE-BSTTTTESSB----EEEEETTEEEEE--SS-
T ss_pred CceEEEEeCC-ceeceEEEeCCCCCccccccceeeEEeCCeeeeccCCCc
Confidence 5788888755 44332 344445422211 224567899999998643
No 416
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.55 E-value=4e+02 Score=23.65 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=9.5
Q ss_pred ceEEccCCcEEE
Q 017371 165 DVVEASDGSLYF 176 (372)
Q Consensus 165 ~l~~d~dG~i~v 176 (372)
.+.+++||.|+.
T Consensus 135 ~i~I~~dG~I~~ 146 (246)
T PRK12640 135 KITIGADGTISA 146 (246)
T ss_pred CEEECCCCEEEE
Confidence 678888888865
No 417
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=20.83 E-value=1.5e+02 Score=16.88 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=16.1
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEE
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRL 104 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~ 104 (372)
....|.+.+++.+|.-+.+|.|++.
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3445666666677777777777653
No 418
>PRK10115 protease 2; Provisional
Probab=20.60 E-value=9.7e+02 Score=24.94 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=38.7
Q ss_pred ceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC--eEEEEeCCccCcc--eEEEecCCCEEEEEeCC
Q 017371 165 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFAN--GVALSRDEDYVVVCESW 239 (372)
Q Consensus 165 ~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~--~~~~~~~~~~~~~--gi~~~~dg~~l~v~~~~ 239 (372)
.+++.+|| .||++.... .......||+++..|+ +-+.+..+..... ....+.|++++++....
T Consensus 176 ~~~w~~D~~~~~y~~~~~------------~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~ 243 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHP------------VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS 243 (686)
T ss_pred EEEEeeCCCEEEEEEecC------------CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC
Confidence 46777776 466653210 0012357999998877 4444554322222 23345588877765433
Q ss_pred C--CeEEEEEc
Q 017371 240 K--FRCRKYWL 248 (372)
Q Consensus 240 ~--~~i~~~~~ 248 (372)
+ ..++.++.
T Consensus 244 ~~~~~~~l~~~ 254 (686)
T PRK10115 244 ATTSEVLLLDA 254 (686)
T ss_pred CccccEEEEEC
Confidence 3 45666664
No 419
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=20.36 E-value=9.7e+02 Score=24.83 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=55.1
Q ss_pred CccEEEcCCC-cEEEEecCCeEEEEe----CCceEEEEe---cC---CCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC
Q 017371 81 PEDASMDKNG-VIYTATRDGWIKRLQ----DGTWVNWKF---ID---SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG 147 (372)
Q Consensus 81 p~~i~~d~~G-~l~v~~~~g~i~~~~----~g~~~~~~~---~~---~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g 147 (372)
..++...+.| .|..++.|..+..+. .|-+..... .+ +.-+ |-.+.++++..++....| .+.+. .+.
T Consensus 270 V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 270 VYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred eEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 4445555666 555555666666665 232332221 11 1224 566778888888876644 55554 332
Q ss_pred cEEEeeecCCcccccccceEEccCCcEEEEeCC
Q 017371 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 180 (372)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~ 180 (372)
.........+.....+.+++.+|.|..+++.+.
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEecc
Confidence 111111222333457789999999999988553
No 420
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=1.1e+03 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.294 Sum_probs=40.4
Q ss_pred cEEEcCC-CcEEEEecCCeEEEEe------CCceEEEEecCCCcccCeEEcCCCC--EEEEeCCCcEEEEc
Q 017371 83 DASMDKN-GVIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLTSTKEGH--LIICDNANGLHKVS 144 (372)
Q Consensus 83 ~i~~d~~-G~l~v~~~~g~i~~~~------~g~~~~~~~~~~~p~~gl~~d~dG~--l~v~~~~~gv~~~~ 144 (372)
++++..+ -.+.+|=.+|.|.++. .|....+...++.|.+||++..+|. ++|++.. .|..+.
T Consensus 130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~ 199 (933)
T KOG2114|consen 130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QVMLYS 199 (933)
T ss_pred EEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-eeEEEE
Confidence 4666643 3566666889898886 2333345566778877999988885 4887654 366555
No 421
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=20.10 E-value=4.7e+02 Score=21.11 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCccEEEcCCCcEEEEecCCeEEEEe--CCce---EEEEecCCCcccCeEEcCC-CCEEEEeCCCcEEEEc
Q 017371 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKE-GHLIICDNANGLHKVS 144 (372)
Q Consensus 80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~d-G~l~v~~~~~gv~~~~ 144 (372)
.|.+|+.++=. +..- ...+|..+. ++++ ..+....+... ||+.|+. +.+|+-+ ...++.+.
T Consensus 35 ~p~si~lT~~H-~llL-~~~~l~~vn~L~~~vV~e~~~~~~~~~~~-gl~~D~~~~t~W~ys-~~~I~ei~ 101 (147)
T PF05131_consen 35 PPLSIALTEFH-LLLL-YSDRLIAVNRLNNKVVFEESLLETGGKIL-GLCRDPSSNTFWLYS-SNSIFEIV 101 (147)
T ss_pred CcceEEeecee-eeEE-eCCEEEEEEecCCcEEEEEEeccCCccee-eEEEcCCCCeEEEEe-CCeeEEEE
Confidence 48888887532 2222 245677777 6654 23344567778 9999965 5677765 45788877
Done!