Query 017375
Match_columns 372
No_of_seqs 296 out of 2027
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.3E-29 2.8E-34 273.2 26.6 188 36-253 664-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 5.4E-29 1.2E-33 269.2 27.7 187 39-254 692-879 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 2.3E-28 5E-33 263.4 24.1 164 166-330 661-853 (854)
4 PRK05007 PII uridylyl-transfer 100.0 3.6E-28 7.8E-33 262.8 24.5 163 168-331 687-879 (884)
5 PRK00275 glnD PII uridylyl-tra 100.0 7.5E-28 1.6E-32 260.3 26.5 184 46-255 702-887 (895)
6 TIGR01693 UTase_glnD [Protein- 100.0 1E-26 2.2E-31 251.8 27.5 189 39-253 659-849 (850)
7 PRK04374 PII uridylyl-transfer 100.0 8.9E-27 1.9E-31 250.6 25.1 182 43-254 685-867 (869)
8 PRK05092 PII uridylyl-transfer 99.9 5.7E-26 1.2E-30 247.6 28.4 193 39-255 723-916 (931)
9 PRK03059 PII uridylyl-transfer 99.9 2.5E-26 5.5E-31 247.5 25.0 186 39-254 669-855 (856)
10 TIGR01693 UTase_glnD [Protein- 99.9 1.7E-25 3.7E-30 242.3 24.2 163 168-330 654-849 (850)
11 PRK03381 PII uridylyl-transfer 99.9 1.7E-25 3.6E-30 239.1 23.7 183 39-250 591-773 (774)
12 PRK00275 glnD PII uridylyl-tra 99.9 1.4E-24 3.1E-29 235.0 25.2 166 169-334 688-889 (895)
13 COG2844 GlnD UTP:GlnB (protein 99.9 5.9E-25 1.3E-29 226.3 20.4 185 40-253 676-861 (867)
14 PRK04374 PII uridylyl-transfer 99.9 1E-23 2.3E-28 227.0 24.6 160 169-331 676-867 (869)
15 COG2844 GlnD UTP:GlnB (protein 99.9 8.4E-24 1.8E-28 217.9 20.5 165 168-333 670-864 (867)
16 PRK05092 PII uridylyl-transfer 99.9 3.8E-23 8.1E-28 225.6 25.6 165 168-332 718-916 (931)
17 PRK03381 PII uridylyl-transfer 99.9 3.1E-23 6.7E-28 221.8 22.8 154 168-327 586-773 (774)
18 PRK03059 PII uridylyl-transfer 99.9 1.1E-22 2.4E-27 219.5 23.7 158 169-330 665-854 (856)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 5.8E-20 1.3E-24 139.4 10.6 73 260-332 1-74 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 1.1E-19 2.5E-24 136.9 10.3 69 260-328 1-70 (72)
21 cd04897 ACT_ACR_3 ACT domain-c 99.8 3.4E-19 7.4E-24 135.2 11.3 75 182-256 1-75 (75)
22 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.2E-18 2.7E-23 132.2 10.2 70 261-331 1-73 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 1.6E-17 3.4E-22 125.2 10.6 69 182-250 1-69 (72)
24 cd04925 ACT_ACR_2 ACT domain-c 99.7 2.4E-16 5.1E-21 120.3 10.6 73 49-122 1-74 (74)
25 PRK11589 gcvR glycine cleavage 99.7 4.7E-16 1E-20 139.3 14.2 141 179-327 5-163 (190)
26 cd04896 ACT_ACR-like_3 ACT dom 99.7 2.7E-16 5.8E-21 119.4 10.5 71 183-254 1-73 (75)
27 cd04900 ACT_UUR-like_1 ACT dom 99.7 4.7E-16 1E-20 118.3 10.5 72 48-120 1-73 (73)
28 cd04927 ACT_ACR-like_2 Second 99.6 2.7E-15 5.8E-20 115.1 10.9 72 50-123 2-74 (76)
29 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.4E-15 9.6E-20 113.3 11.0 72 183-254 1-73 (74)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 7.2E-15 1.6E-19 111.8 10.5 71 183-253 2-73 (73)
31 cd04927 ACT_ACR-like_2 Second 99.6 3.3E-14 7.1E-19 109.0 11.0 70 262-331 2-72 (76)
32 PRK11589 gcvR glycine cleavage 99.5 5E-13 1.1E-17 119.8 16.8 156 44-252 4-165 (190)
33 COG2716 GcvR Glycine cleavage 99.5 1.9E-13 4.1E-18 117.7 10.3 141 180-328 3-161 (176)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 7E-13 1.5E-17 98.7 9.7 65 49-120 2-67 (68)
35 cd04926 ACT_ACR_4 C-terminal 99.4 1.3E-12 2.8E-17 99.1 10.2 67 49-117 2-68 (72)
36 PRK00227 glnD PII uridylyl-tra 99.4 2.3E-11 5.1E-16 128.1 19.2 143 49-253 547-690 (693)
37 cd04926 ACT_ACR_4 C-terminal 99.3 9.6E-12 2.1E-16 94.3 10.1 69 260-328 1-69 (72)
38 PRK00227 glnD PII uridylyl-tra 99.3 1.3E-11 2.8E-16 130.1 14.4 116 183-307 547-674 (693)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.8E-11 3.8E-16 91.7 10.2 70 49-120 1-70 (70)
40 cd04928 ACT_TyrKc Uncharacteri 99.3 1.7E-11 3.6E-16 91.3 9.6 65 183-253 2-67 (68)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 4E-11 8.7E-16 89.8 10.6 69 261-329 1-69 (70)
42 COG2716 GcvR Glycine cleavage 99.2 2.3E-10 4.9E-15 98.8 11.8 159 45-252 2-162 (176)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 3.6E-09 7.7E-14 78.8 10.2 69 49-119 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 99.0 9.6E-09 2.1E-13 76.4 10.6 69 261-329 1-69 (70)
45 PF13740 ACT_6: ACT domain; PD 98.7 2.1E-07 4.6E-12 71.1 9.8 64 48-119 2-65 (76)
46 PF13740 ACT_6: ACT domain; PD 98.7 3.2E-07 7E-12 70.1 10.7 65 182-253 2-66 (76)
47 cd04894 ACT_ACR-like_1 ACT dom 98.4 8.4E-07 1.8E-11 63.7 6.7 67 49-119 1-67 (69)
48 PF01842 ACT: ACT domain; Int 98.4 3.2E-06 6.9E-11 61.9 10.2 62 183-252 1-64 (66)
49 cd04870 ACT_PSP_1 CT domains f 98.4 1.2E-06 2.5E-11 66.8 7.4 50 262-311 1-50 (75)
50 cd04894 ACT_ACR-like_1 ACT dom 98.4 1.3E-06 2.9E-11 62.7 6.9 67 183-252 1-67 (69)
51 cd04870 ACT_PSP_1 CT domains f 98.4 2E-06 4.4E-11 65.4 8.1 64 184-253 1-64 (75)
52 cd04893 ACT_GcvR_1 ACT domains 98.4 3.2E-06 7E-11 64.7 9.1 62 183-251 2-63 (77)
53 PF01842 ACT: ACT domain; Int 98.4 4.1E-06 9E-11 61.3 9.3 61 49-118 1-63 (66)
54 cd04893 ACT_GcvR_1 ACT domains 98.3 2.8E-06 6.2E-11 65.1 8.3 62 49-118 2-63 (77)
55 COG4747 ACT domain-containing 98.3 5.3E-05 1.1E-09 61.7 14.4 110 184-306 5-116 (142)
56 cd04875 ACT_F4HF-DF N-terminal 98.2 4.6E-06 1E-10 63.2 5.8 65 262-328 1-65 (74)
57 cd04869 ACT_GcvR_2 ACT domains 98.0 1.3E-05 2.8E-10 61.6 6.4 66 262-328 1-68 (81)
58 cd04872 ACT_1ZPV ACT domain pr 98.0 1.5E-05 3.2E-10 62.6 6.7 46 261-306 2-47 (88)
59 cd04872 ACT_1ZPV ACT domain pr 98.0 1.9E-05 4E-10 62.0 7.0 64 49-118 2-65 (88)
60 cd04875 ACT_F4HF-DF N-terminal 98.0 5.6E-05 1.2E-09 57.2 8.6 35 184-218 1-35 (74)
61 cd04869 ACT_GcvR_2 ACT domains 98.0 5.3E-05 1.2E-09 58.1 8.4 62 50-118 1-68 (81)
62 PRK00194 hypothetical protein; 97.9 3.3E-05 7.2E-10 60.7 7.3 65 48-118 3-67 (90)
63 PRK00194 hypothetical protein; 97.9 3.3E-05 7.2E-10 60.7 6.7 43 260-306 3-45 (90)
64 COG4747 ACT domain-containing 97.7 0.0055 1.2E-07 50.1 16.3 112 50-229 5-117 (142)
65 PF13291 ACT_4: ACT domain; PD 97.7 0.00023 4.9E-09 54.6 8.2 63 48-117 6-70 (80)
66 PF13291 ACT_4: ACT domain; PD 97.6 0.00059 1.3E-08 52.3 9.6 63 182-250 6-70 (80)
67 COG3830 ACT domain-containing 97.6 0.00011 2.4E-09 57.2 5.0 67 260-330 3-69 (90)
68 PRK13010 purU formyltetrahydro 97.5 0.0021 4.5E-08 61.7 13.8 108 182-293 9-126 (289)
69 PRK06027 purU formyltetrahydro 97.5 0.0039 8.5E-08 59.8 15.6 104 181-289 5-118 (286)
70 TIGR00655 PurU formyltetrahydr 97.5 0.003 6.5E-08 60.3 14.5 105 184-293 2-117 (280)
71 COG3830 ACT domain-containing 97.5 0.00018 4E-09 56.0 4.9 67 182-253 3-69 (90)
72 PRK13011 formyltetrahydrofolat 97.5 0.0003 6.4E-09 67.4 7.3 46 260-307 7-52 (286)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0012 2.6E-08 49.4 9.1 60 51-117 2-62 (74)
74 PRK13011 formyltetrahydrofolat 97.4 0.0064 1.4E-07 58.3 15.0 108 182-295 7-124 (286)
75 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0024 5.1E-08 47.9 9.5 60 185-250 2-62 (74)
76 PRK06027 purU formyltetrahydro 97.3 0.00094 2E-08 64.0 8.7 71 47-124 5-77 (286)
77 PRK13010 purU formyltetrahydro 97.2 0.0013 2.8E-08 63.1 8.7 67 47-118 8-76 (289)
78 TIGR00655 PurU formyltetrahydr 97.2 0.0014 3.1E-08 62.5 8.7 69 50-124 2-72 (280)
79 cd04905 ACT_CM-PDT C-terminal 97.2 0.0031 6.6E-08 48.3 8.9 66 261-328 2-68 (80)
80 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0043 9.4E-08 45.5 8.8 60 51-117 1-65 (73)
81 CHL00100 ilvH acetohydroxyacid 97.1 0.0025 5.4E-08 56.5 8.5 66 261-330 3-68 (174)
82 cd04877 ACT_TyrR N-terminal AC 97.1 0.0035 7.6E-08 47.3 7.9 37 184-221 2-38 (74)
83 cd04889 ACT_PDH-BS-like C-term 97.1 0.0022 4.9E-08 45.4 6.4 46 51-96 1-47 (56)
84 cd04909 ACT_PDH-BS C-terminal 97.1 0.0058 1.3E-07 45.1 8.9 61 261-328 2-64 (69)
85 cd04889 ACT_PDH-BS-like C-term 97.0 0.0025 5.4E-08 45.2 6.3 45 263-307 1-46 (56)
86 cd04878 ACT_AHAS N-terminal AC 97.0 0.0051 1.1E-07 45.0 8.2 62 262-328 2-64 (72)
87 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0036 7.9E-08 46.0 7.0 45 261-307 2-46 (66)
88 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0089 1.9E-07 43.8 9.1 60 185-250 1-65 (73)
89 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0073 1.6E-07 43.9 8.1 44 263-306 2-47 (71)
90 cd04877 ACT_TyrR N-terminal AC 96.9 0.0054 1.2E-07 46.2 7.5 35 50-84 2-36 (74)
91 cd04908 ACT_Bt0572_1 N-termina 96.9 0.005 1.1E-07 45.3 7.1 44 49-94 2-45 (66)
92 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0086 1.9E-07 44.6 8.6 64 261-328 1-65 (79)
93 cd04898 ACT_ACR-like_4 ACT dom 96.8 0.0022 4.8E-08 48.1 4.3 53 262-315 2-58 (77)
94 COG0788 PurU Formyltetrahydrof 96.7 0.0079 1.7E-07 56.1 8.7 66 181-251 6-73 (287)
95 PRK07431 aspartate kinase; Pro 96.7 0.45 9.7E-06 50.3 23.1 195 46-292 346-554 (587)
96 cd04888 ACT_PheB-BS C-terminal 96.7 0.014 3.1E-07 43.7 8.5 61 50-117 2-64 (76)
97 COG0788 PurU Formyltetrahydrof 96.7 0.0039 8.5E-08 58.1 6.3 94 259-358 6-109 (287)
98 cd04882 ACT_Bt0572_2 C-termina 96.7 0.0089 1.9E-07 43.2 7.1 36 262-297 1-36 (65)
99 cd04888 ACT_PheB-BS C-terminal 96.6 0.0075 1.6E-07 45.2 6.7 62 262-328 2-65 (76)
100 cd04909 ACT_PDH-BS C-terminal 96.6 0.017 3.7E-07 42.5 8.5 47 183-229 2-50 (69)
101 PRK06737 acetolactate synthase 96.6 0.016 3.4E-07 44.3 8.1 62 49-118 3-66 (76)
102 TIGR00119 acolac_sm acetolacta 96.6 0.014 3E-07 50.9 8.9 66 261-330 2-67 (157)
103 PRK06737 acetolactate synthase 96.6 0.015 3.3E-07 44.3 8.0 64 261-328 3-66 (76)
104 cd04902 ACT_3PGDH-xct C-termin 96.6 0.012 2.5E-07 43.7 7.4 44 263-306 2-47 (73)
105 cd04903 ACT_LSD C-terminal ACT 96.6 0.016 3.5E-07 42.2 8.1 33 263-295 2-34 (71)
106 PRK08178 acetolactate synthase 96.6 0.017 3.8E-07 45.9 8.4 67 46-119 6-72 (96)
107 PRK13562 acetolactate synthase 96.6 0.014 3.1E-07 45.2 7.7 64 49-119 3-68 (84)
108 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.021 4.6E-07 42.4 8.6 35 50-84 2-36 (79)
109 TIGR00119 acolac_sm acetolacta 96.5 0.02 4.4E-07 49.9 9.4 63 49-119 2-66 (157)
110 cd04878 ACT_AHAS N-terminal AC 96.4 0.029 6.3E-07 40.8 8.5 46 50-95 2-49 (72)
111 PRK11895 ilvH acetolactate syn 96.4 0.026 5.7E-07 49.4 9.4 63 49-119 3-67 (161)
112 cd04879 ACT_3PGDH-like ACT_3PG 96.4 0.011 2.4E-07 42.9 6.1 45 51-95 2-48 (71)
113 cd04880 ACT_AAAH-PDT-like ACT 96.4 0.032 6.9E-07 42.0 8.8 64 263-328 2-66 (75)
114 PRK13562 acetolactate synthase 96.4 0.018 3.9E-07 44.6 7.3 64 184-253 4-69 (84)
115 CHL00100 ilvH acetohydroxyacid 96.4 0.027 5.8E-07 50.0 9.4 64 49-120 3-68 (174)
116 PRK08178 acetolactate synthase 96.3 0.023 4.9E-07 45.2 7.8 67 259-330 7-73 (96)
117 cd04874 ACT_Af1403 N-terminal 96.3 0.032 7E-07 40.7 8.3 35 262-296 2-36 (72)
118 PRK08577 hypothetical protein; 96.3 0.018 4E-07 48.8 7.7 65 260-328 56-122 (136)
119 cd04901 ACT_3PGDH C-terminal A 96.3 0.006 1.3E-07 44.8 4.1 44 263-306 2-45 (69)
120 cd04904 ACT_AAAH ACT domain of 96.3 0.029 6.2E-07 42.4 7.8 49 262-311 2-51 (74)
121 cd04903 ACT_LSD C-terminal ACT 96.2 0.035 7.7E-07 40.3 8.1 44 185-228 2-47 (71)
122 PRK11895 ilvH acetolactate syn 96.2 0.032 7E-07 48.8 8.9 64 261-330 3-68 (161)
123 cd02116 ACT ACT domains are co 96.2 0.032 6.9E-07 37.5 7.4 35 263-297 1-35 (60)
124 PRK11152 ilvM acetolactate syn 96.2 0.015 3.3E-07 44.3 6.0 61 261-328 4-66 (76)
125 cd04901 ACT_3PGDH C-terminal A 96.2 0.0064 1.4E-07 44.7 3.8 45 185-229 2-46 (69)
126 cd04884 ACT_CBS C-terminal ACT 96.1 0.032 7E-07 41.6 7.5 34 263-296 2-35 (72)
127 cd04874 ACT_Af1403 N-terminal 96.1 0.03 6.5E-07 40.9 7.0 46 50-95 2-48 (72)
128 cd04883 ACT_AcuB C-terminal AC 96.0 0.048 1E-06 40.3 8.1 34 261-294 2-35 (72)
129 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.062 1.3E-06 38.0 8.5 61 263-328 1-62 (71)
130 PRK04435 hypothetical protein; 96.0 0.064 1.4E-06 46.3 9.8 55 42-96 63-118 (147)
131 cd04931 ACT_PAH ACT domain of 96.0 0.054 1.2E-06 42.7 8.3 66 260-328 14-80 (90)
132 cd04905 ACT_CM-PDT C-terminal 95.9 0.089 1.9E-06 40.1 9.2 66 183-251 2-68 (80)
133 cd04882 ACT_Bt0572_2 C-termina 95.9 0.019 4.1E-07 41.4 5.2 44 51-94 2-47 (65)
134 cd04902 ACT_3PGDH-xct C-termin 95.9 0.037 8.1E-07 40.9 7.0 45 51-95 2-48 (73)
135 PRK11152 ilvM acetolactate syn 95.9 0.06 1.3E-06 41.1 7.9 62 183-252 4-67 (76)
136 PRK08577 hypothetical protein; 95.9 0.08 1.7E-06 44.9 9.7 76 19-94 17-104 (136)
137 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.085 1.8E-06 37.2 8.4 45 51-95 1-46 (71)
138 cd04884 ACT_CBS C-terminal ACT 95.8 0.064 1.4E-06 40.0 7.8 34 51-84 2-35 (72)
139 PRK07431 aspartate kinase; Pro 95.7 1.9 4.1E-05 45.6 21.2 169 55-294 278-474 (587)
140 PRK04435 hypothetical protein; 95.5 0.14 3E-06 44.2 9.7 56 174-229 61-117 (147)
141 TIGR00656 asp_kin_monofn aspar 95.4 0.72 1.6E-05 46.2 16.0 100 181-291 259-371 (401)
142 PRK07334 threonine dehydratase 95.2 0.12 2.5E-06 52.1 9.6 64 48-118 326-394 (403)
143 cd02116 ACT ACT domains are co 95.1 0.088 1.9E-06 35.2 6.2 35 51-85 1-35 (60)
144 TIGR00719 sda_beta L-serine de 95.0 0.098 2.1E-06 47.8 7.8 60 258-321 146-207 (208)
145 cd04883 ACT_AcuB C-terminal AC 94.9 0.13 2.8E-06 37.9 6.9 47 49-95 2-50 (72)
146 PF13710 ACT_5: ACT domain; PD 94.8 0.11 2.5E-06 38.0 6.2 54 269-328 1-56 (63)
147 PRK07334 threonine dehydratase 94.8 0.18 3.8E-06 50.8 9.8 64 182-251 326-394 (403)
148 PRK06635 aspartate kinase; Rev 94.8 0.39 8.6E-06 48.2 12.3 103 181-292 261-375 (404)
149 cd04929 ACT_TPH ACT domain of 94.8 0.16 3.4E-06 38.5 7.2 51 262-313 2-53 (74)
150 PF13710 ACT_5: ACT domain; PD 94.7 0.13 2.9E-06 37.6 6.3 55 57-119 1-57 (63)
151 PRK10872 relA (p)ppGpp synthet 94.5 0.25 5.4E-06 53.3 10.3 73 172-250 655-730 (743)
152 cd04931 ACT_PAH ACT domain of 94.3 0.46 1E-05 37.4 9.1 70 180-253 12-82 (90)
153 PRK11899 prephenate dehydratas 94.2 0.23 5E-06 47.4 8.4 56 260-316 194-250 (279)
154 cd04880 ACT_AAAH-PDT-like ACT 94.1 0.45 9.8E-06 35.6 8.3 64 185-251 2-66 (75)
155 cd04871 ACT_PSP_2 ACT domains 94.1 0.049 1.1E-06 42.3 3.0 61 262-328 1-71 (84)
156 PRK06635 aspartate kinase; Rev 94.0 3.2 6.8E-05 41.6 16.8 106 50-213 264-374 (404)
157 cd04885 ACT_ThrD-I Tandem C-te 93.9 0.38 8.3E-06 35.4 7.5 61 263-328 1-61 (68)
158 PRK06291 aspartate kinase; Pro 93.8 1.6 3.6E-05 44.7 14.5 113 180-306 319-445 (465)
159 PRK10872 relA (p)ppGpp synthet 93.8 0.29 6.3E-06 52.8 9.1 63 48-117 666-730 (743)
160 cd04930 ACT_TH ACT domain of t 93.7 0.4 8.7E-06 39.6 7.9 53 260-313 41-94 (115)
161 PRK11092 bifunctional (p)ppGpp 93.4 0.56 1.2E-05 50.5 10.5 73 172-250 615-689 (702)
162 cd04885 ACT_ThrD-I Tandem C-te 93.2 0.62 1.4E-05 34.3 7.6 61 51-118 1-61 (68)
163 cd04898 ACT_ACR-like_4 ACT dom 93.2 0.22 4.8E-06 37.5 5.0 68 51-120 3-74 (77)
164 TIGR00691 spoT_relA (p)ppGpp s 93.1 0.68 1.5E-05 49.8 10.7 73 172-250 599-673 (683)
165 PRK08210 aspartate kinase I; R 93.1 1.8 4E-05 43.4 13.3 96 181-290 270-372 (403)
166 PRK11092 bifunctional (p)ppGpp 92.9 0.47 1E-05 51.1 9.1 63 48-117 626-689 (702)
167 COG0077 PheA Prephenate dehydr 92.8 0.47 1E-05 45.2 7.9 57 259-316 193-250 (279)
168 PRK10622 pheA bifunctional cho 92.8 0.56 1.2E-05 47.0 8.8 56 260-316 297-353 (386)
169 PRK09034 aspartate kinase; Rev 92.7 6.2 0.00013 40.4 16.6 107 181-295 307-423 (454)
170 TIGR00656 asp_kin_monofn aspar 92.7 12 0.00025 37.5 19.0 106 47-212 259-370 (401)
171 PRK09436 thrA bifunctional asp 92.4 7.4 0.00016 42.9 17.7 102 180-292 313-431 (819)
172 TIGR00719 sda_beta L-serine de 92.3 0.73 1.6E-05 42.0 8.3 50 179-228 145-196 (208)
173 PRK11790 D-3-phosphoglycerate 92.2 0.31 6.8E-06 49.2 6.3 60 260-323 338-397 (409)
174 PF13840 ACT_7: ACT domain ; P 92.0 0.59 1.3E-05 34.3 6.1 45 180-229 4-52 (65)
175 TIGR00691 spoT_relA (p)ppGpp s 92.0 0.72 1.6E-05 49.6 9.1 63 48-117 610-673 (683)
176 cd04871 ACT_PSP_2 ACT domains 91.8 0.1 2.2E-06 40.5 1.8 61 184-251 1-71 (84)
177 COG1707 ACT domain-containing 91.8 0.68 1.5E-05 40.4 6.9 46 50-95 4-51 (218)
178 PRK06545 prephenate dehydrogen 91.7 0.63 1.4E-05 46.0 7.8 49 259-307 289-337 (359)
179 TIGR00657 asp_kinases aspartat 91.7 4.8 0.0001 40.9 14.4 101 181-292 301-413 (441)
180 COG0317 SpoT Guanosine polypho 91.5 1.1 2.4E-05 47.8 9.7 73 172-250 616-690 (701)
181 PRK08818 prephenate dehydrogen 91.5 0.42 9.1E-06 47.6 6.2 48 260-308 295-343 (370)
182 PLN02551 aspartokinase 91.4 14 0.00029 38.7 17.4 114 180-306 364-491 (521)
183 cd04904 ACT_AAAH ACT domain of 91.4 1.3 2.7E-05 33.3 7.4 48 185-233 3-51 (74)
184 PF13840 ACT_7: ACT domain ; P 91.0 1.1 2.4E-05 32.8 6.6 46 46-96 4-53 (65)
185 COG0317 SpoT Guanosine polypho 90.9 0.98 2.1E-05 48.3 8.5 65 46-117 625-690 (701)
186 PRK09181 aspartate kinase; Val 90.8 5.5 0.00012 41.1 13.7 101 181-292 328-436 (475)
187 COG1707 ACT domain-containing 90.6 0.67 1.5E-05 40.5 5.8 45 262-306 4-48 (218)
188 PRK06291 aspartate kinase; Pro 90.5 23 0.00049 36.4 18.5 111 47-217 320-436 (465)
189 cd04929 ACT_TPH ACT domain of 89.9 2.2 4.8E-05 32.2 7.5 49 185-234 3-52 (74)
190 PRK06349 homoserine dehydrogen 89.8 1.4 3.1E-05 44.6 8.5 65 260-328 348-412 (426)
191 PRK11790 D-3-phosphoglycerate 89.7 1.6 3.5E-05 44.1 8.6 50 46-95 336-385 (409)
192 PRK06382 threonine dehydratase 89.6 2.1 4.5E-05 43.1 9.4 67 45-118 327-398 (406)
193 PRK13581 D-3-phosphoglycerate 89.6 0.85 1.8E-05 47.6 6.8 62 259-324 451-514 (526)
194 PRK08210 aspartate kinase I; R 89.4 22 0.00048 35.6 16.7 99 47-212 270-372 (403)
195 PRK09224 threonine dehydratase 89.2 19 0.00042 37.3 16.4 108 180-294 326-456 (504)
196 PLN02317 arogenate dehydratase 88.9 2.1 4.5E-05 42.7 8.6 66 261-328 284-364 (382)
197 PRK09034 aspartate kinase; Rev 88.9 30 0.00064 35.5 18.1 111 47-217 307-423 (454)
198 PRK14646 hypothetical protein; 88.7 5.7 0.00012 34.5 10.2 93 194-288 8-103 (155)
199 PRK12483 threonine dehydratase 88.4 24 0.00052 36.8 16.4 136 180-328 343-502 (521)
200 PRK06382 threonine dehydratase 88.4 3.2 6.9E-05 41.8 9.8 51 179-229 327-382 (406)
201 cd04906 ACT_ThrD-I_1 First of 88.3 4.3 9.3E-05 31.2 8.4 61 50-118 3-64 (85)
202 cd04932 ACT_AKiii-LysC-EC_1 AC 87.9 5.2 0.00011 30.1 8.4 62 261-328 2-67 (75)
203 PRK14634 hypothetical protein; 87.8 6.7 0.00015 34.1 10.2 90 193-286 7-101 (155)
204 cd04935 ACT_AKiii-DAPDC_1 ACT 87.7 3.6 7.8E-05 31.0 7.4 56 267-328 11-67 (75)
205 TIGR01327 PGDH D-3-phosphoglyc 87.6 1.1 2.4E-05 46.7 6.1 62 259-324 450-513 (525)
206 PRK14636 hypothetical protein; 87.4 5.8 0.00013 35.3 9.6 91 192-286 4-99 (176)
207 cd04906 ACT_ThrD-I_1 First of 87.1 5.2 0.00011 30.8 8.2 61 262-328 3-64 (85)
208 COG0527 LysC Aspartokinases [A 87.1 24 0.00051 36.2 15.1 113 180-307 305-429 (447)
209 COG2150 Predicted regulator of 86.9 2 4.2E-05 37.4 6.1 61 261-323 94-156 (167)
210 PRK11899 prephenate dehydratas 86.7 4.5 9.7E-05 38.7 9.2 53 182-235 194-247 (279)
211 PRK14630 hypothetical protein; 86.0 10 0.00022 32.6 10.1 88 192-285 7-97 (143)
212 PRK06545 prephenate dehydrogen 85.8 2.8 6.2E-05 41.4 7.6 41 180-220 288-328 (359)
213 PRK14645 hypothetical protein; 85.7 12 0.00026 32.5 10.5 92 193-286 9-103 (154)
214 cd04930 ACT_TH ACT domain of t 85.5 4.8 0.0001 33.2 7.6 52 182-234 41-93 (115)
215 PRK08198 threonine dehydratase 85.2 6.6 0.00014 39.4 10.1 38 45-82 324-361 (404)
216 KOG2663 Acetolactate synthase, 85.1 1.9 4E-05 40.2 5.4 65 182-253 77-143 (309)
217 TIGR01127 ilvA_1Cterm threonin 84.8 5.7 0.00012 39.4 9.3 66 259-329 304-374 (380)
218 PLN02551 aspartokinase 84.7 55 0.0012 34.2 17.9 139 46-253 364-507 (521)
219 COG0077 PheA Prephenate dehydr 84.7 5.4 0.00012 38.1 8.5 55 181-236 193-248 (279)
220 PRK11898 prephenate dehydratas 83.7 5.4 0.00012 38.2 8.3 67 260-328 196-264 (283)
221 PRK08198 threonine dehydratase 83.5 9.8 0.00021 38.1 10.5 37 180-216 325-361 (404)
222 PRK09084 aspartate kinase III; 82.8 15 0.00032 37.6 11.5 114 180-306 304-429 (448)
223 KOG2663 Acetolactate synthase, 82.4 3 6.6E-05 38.9 5.6 36 259-294 76-111 (309)
224 TIGR01127 ilvA_1Cterm threonin 82.1 10 0.00023 37.6 10.0 36 47-82 304-339 (380)
225 cd04890 ACT_AK-like_1 ACT doma 81.9 11 0.00024 26.6 7.5 42 263-308 3-47 (62)
226 COG0440 IlvH Acetolactate synt 81.8 6.8 0.00015 34.3 7.3 66 48-120 4-70 (163)
227 TIGR01270 Trp_5_monoox tryptop 81.7 4.5 9.8E-05 41.2 7.0 53 260-313 31-85 (464)
228 PRK13581 D-3-phosphoglycerate 81.4 3.8 8.2E-05 42.8 6.7 49 180-228 450-500 (526)
229 PRK08818 prephenate dehydrogen 81.2 4 8.6E-05 40.7 6.5 48 181-229 294-342 (370)
230 PRK14640 hypothetical protein; 81.1 20 0.00043 31.0 10.1 90 195-288 8-100 (152)
231 TIGR01268 Phe4hydrox_tetr phen 79.2 8 0.00017 39.2 7.9 53 260-313 16-69 (436)
232 PRK06349 homoserine dehydrogen 79.0 9.9 0.00022 38.5 8.7 51 46-96 346-396 (426)
233 PRK09181 aspartate kinase; Val 78.6 86 0.0019 32.4 17.1 104 47-214 328-436 (475)
234 COG2150 Predicted regulator of 78.5 3.8 8.2E-05 35.7 4.6 33 183-215 96-128 (167)
235 cd04912 ACT_AKiii-LysC-EC-like 78.5 17 0.00038 27.0 7.9 62 261-328 2-67 (75)
236 PLN02550 threonine dehydratase 78.4 83 0.0018 33.4 15.4 134 181-328 416-572 (591)
237 PRK14637 hypothetical protein; 78.4 27 0.00058 30.2 10.0 92 191-286 6-99 (151)
238 PRK10622 pheA bifunctional cho 78.1 11 0.00024 37.7 8.6 54 181-235 296-350 (386)
239 PRK14639 hypothetical protein; 77.9 23 0.00051 30.1 9.4 86 199-288 3-91 (140)
240 PRK09436 thrA bifunctional asp 77.7 1.2E+02 0.0026 33.6 22.6 181 46-294 313-504 (819)
241 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.0 23 0.0005 25.0 8.6 32 184-215 3-37 (66)
242 PRK10820 DNA-binding transcrip 76.8 7.7 0.00017 40.4 7.3 36 262-297 2-37 (520)
243 PRK00092 ribosome maturation p 76.6 34 0.00073 29.6 10.2 88 195-286 9-99 (154)
244 PRK14638 hypothetical protein; 76.6 35 0.00077 29.4 10.2 90 195-287 10-102 (150)
245 COG0440 IlvH Acetolactate synt 76.5 9.2 0.0002 33.5 6.5 65 183-254 5-71 (163)
246 PRK14647 hypothetical protein; 76.5 34 0.00074 29.8 10.2 90 195-288 10-102 (159)
247 PRK14643 hypothetical protein; 75.7 36 0.00079 29.8 10.1 91 195-288 11-107 (164)
248 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.6 25 0.00055 24.7 8.8 34 262-295 3-39 (66)
249 cd04868 ACT_AK-like ACT domain 73.9 7.5 0.00016 26.3 4.5 33 262-294 2-37 (60)
250 TIGR01327 PGDH D-3-phosphoglyc 73.8 6 0.00013 41.3 5.6 49 47-95 450-500 (525)
251 PRK08961 bifunctional aspartat 73.6 41 0.00089 37.4 12.3 102 180-288 320-429 (861)
252 cd04932 ACT_AKiii-LysC-EC_1 AC 73.1 37 0.0008 25.5 8.4 38 189-230 11-48 (75)
253 TIGR01124 ilvA_2Cterm threonin 73.1 1.2E+02 0.0026 31.5 15.5 106 180-293 323-451 (499)
254 cd04934 ACT_AK-Hom3_1 CT domai 72.8 20 0.00044 26.7 6.9 54 268-328 12-65 (73)
255 cd04891 ACT_AK-LysC-DapG-like_ 72.2 19 0.00041 24.5 6.3 42 55-96 8-50 (61)
256 cd04919 ACT_AK-Hom3_2 ACT doma 72.2 32 0.00069 24.3 8.1 34 262-295 3-39 (66)
257 PLN02317 arogenate dehydratase 72.2 20 0.00043 35.9 8.4 36 182-217 283-318 (382)
258 cd04912 ACT_AKiii-LysC-EC-like 71.5 37 0.00079 25.2 8.1 62 184-251 3-67 (75)
259 cd04933 ACT_AK1-AT_1 ACT domai 71.3 22 0.00048 27.1 6.8 37 267-307 11-47 (78)
260 cd04937 ACT_AKi-DapG-BS_2 ACT 70.5 36 0.00078 24.3 8.4 28 50-77 3-33 (64)
261 cd04891 ACT_AK-LysC-DapG-like_ 70.5 16 0.00034 24.9 5.6 41 267-307 8-49 (61)
262 PRK14633 hypothetical protein; 69.8 64 0.0014 27.8 10.2 89 195-287 6-96 (150)
263 cd04913 ACT_AKii-LysC-BS-like_ 69.7 14 0.00031 26.5 5.4 27 267-293 9-35 (75)
264 COG3978 Acetolactate synthase 69.6 40 0.00088 25.9 7.6 65 48-121 3-69 (86)
265 cd04919 ACT_AK-Hom3_2 ACT doma 69.4 37 0.0008 24.0 8.7 34 184-217 3-39 (66)
266 COG4492 PheB ACT domain-contai 69.3 31 0.00068 29.2 7.6 54 43-96 67-121 (150)
267 cd04913 ACT_AKii-LysC-BS-like_ 68.8 32 0.0007 24.5 7.2 41 55-95 9-50 (75)
268 PRK09466 metL bifunctional asp 68.2 84 0.0018 34.8 13.0 101 180-291 315-425 (810)
269 PRK08526 threonine dehydratase 68.1 46 0.001 33.5 10.3 72 258-333 324-399 (403)
270 cd04937 ACT_AKi-DapG-BS_2 ACT 68.1 41 0.00089 24.0 8.4 28 184-211 3-33 (64)
271 PF02576 DUF150: Uncharacteris 66.6 31 0.00068 29.2 7.6 84 199-285 2-87 (141)
272 cd04924 ACT_AK-Arch_2 ACT doma 66.0 43 0.00093 23.4 8.0 44 262-307 3-49 (66)
273 PRK14632 hypothetical protein; 65.8 74 0.0016 28.1 10.0 88 195-286 10-99 (172)
274 COG3978 Acetolactate synthase 64.4 41 0.00089 25.8 6.8 47 260-306 3-51 (86)
275 PRK08526 threonine dehydratase 64.1 54 0.0012 33.0 9.9 39 45-83 323-361 (403)
276 TIGR02079 THD1 threonine dehyd 63.0 74 0.0016 32.1 10.7 67 258-328 323-390 (409)
277 cd04868 ACT_AK-like ACT domain 62.4 15 0.00032 24.7 4.1 32 184-215 2-36 (60)
278 cd04935 ACT_AKiii-DAPDC_1 ACT 62.2 64 0.0014 24.1 8.5 57 189-251 11-67 (75)
279 PRK11898 prephenate dehydratas 62.1 41 0.0009 32.1 8.3 66 182-250 196-263 (283)
280 PRK08841 aspartate kinase; Val 60.9 64 0.0014 32.4 9.7 94 181-292 257-350 (392)
281 cd04892 ACT_AK-like_2 ACT doma 60.5 20 0.00043 24.7 4.5 32 262-293 2-36 (65)
282 PF05088 Bac_GDH: Bacterial NA 60.3 91 0.002 36.9 11.8 167 168-334 473-659 (1528)
283 COG0779 Uncharacterized protei 59.9 1.1E+02 0.0024 26.5 9.7 87 194-286 9-100 (153)
284 PRK12483 threonine dehydratase 58.9 81 0.0017 33.0 10.3 64 259-328 344-408 (521)
285 PRK14631 hypothetical protein; 58.9 1.3E+02 0.0028 26.6 11.3 93 194-288 9-120 (174)
286 PF05088 Bac_GDH: Bacterial NA 58.3 66 0.0014 38.0 10.3 80 44-124 485-569 (1528)
287 PRK09084 aspartate kinase III; 58.3 2.1E+02 0.0046 29.2 13.2 47 46-96 304-353 (448)
288 COG3283 TyrR Transcriptional r 57.4 27 0.00058 34.9 6.0 59 262-328 2-60 (511)
289 cd04916 ACT_AKiii-YclM-BS_2 AC 57.1 64 0.0014 22.5 8.1 34 262-295 3-39 (66)
290 COG2061 ACT-domain-containing 54.7 1.4E+02 0.003 26.0 9.1 31 182-212 5-35 (170)
291 COG0527 LysC Aspartokinases [A 54.5 2.6E+02 0.0056 28.7 18.5 108 46-214 305-418 (447)
292 TIGR02079 THD1 threonine dehyd 54.0 1E+02 0.0022 31.0 9.9 38 45-82 322-359 (409)
293 TIGR00657 asp_kinases aspartat 52.8 2.6E+02 0.0057 28.3 19.0 34 181-214 377-413 (441)
294 cd04924 ACT_AK-Arch_2 ACT doma 52.7 76 0.0017 22.1 8.6 34 184-217 3-39 (66)
295 cd04921 ACT_AKi-HSDH-ThrA-like 52.3 42 0.00091 24.8 5.3 36 261-296 2-40 (80)
296 PRK08639 threonine dehydratase 52.2 1.4E+02 0.003 30.2 10.6 67 258-328 334-401 (420)
297 cd04923 ACT_AK-LysC-DapG-like_ 52.1 75 0.0016 21.8 7.5 31 262-292 2-35 (63)
298 TIGR01124 ilvA_2Cterm threonin 51.4 1.3E+02 0.0029 31.2 10.5 64 259-328 324-387 (499)
299 PRK10820 DNA-binding transcrip 51.2 23 0.00051 36.8 5.0 36 184-219 2-37 (520)
300 cd04936 ACT_AKii-LysC-BS-like_ 50.7 36 0.00078 23.5 4.5 31 262-292 2-35 (63)
301 TIGR01268 Phe4hydrox_tetr phen 50.6 83 0.0018 32.1 8.5 66 182-251 16-82 (436)
302 PRK00907 hypothetical protein; 50.3 72 0.0016 25.2 6.4 64 182-251 17-84 (92)
303 COG4492 PheB ACT domain-contai 50.2 29 0.00064 29.3 4.3 48 260-307 72-120 (150)
304 PRK08639 threonine dehydratase 49.7 1.2E+02 0.0026 30.6 9.7 68 45-118 333-401 (420)
305 cd04918 ACT_AK1-AT_2 ACT domai 49.5 94 0.002 22.2 8.4 36 184-219 3-40 (65)
306 PRK14635 hypothetical protein; 49.4 1.5E+02 0.0033 25.8 9.0 96 192-289 5-103 (162)
307 TIGR01270 Trp_5_monoox tryptop 48.4 70 0.0015 32.8 7.6 54 180-234 29-84 (464)
308 PRK14646 hypothetical protein; 47.6 1.9E+02 0.004 25.1 10.4 78 273-352 9-91 (155)
309 PRK09224 threonine dehydratase 46.7 1.6E+02 0.0035 30.6 10.3 64 259-328 327-391 (504)
310 cd04933 ACT_AK1-AT_1 ACT domai 46.5 33 0.00071 26.1 3.9 38 189-230 11-48 (78)
311 cd04916 ACT_AKiii-YclM-BS_2 AC 46.1 1E+02 0.0022 21.5 8.5 32 50-81 3-37 (66)
312 cd04921 ACT_AKi-HSDH-ThrA-like 45.8 1.2E+02 0.0026 22.3 8.8 33 184-216 3-38 (80)
313 PRK14641 hypothetical protein; 45.6 2E+02 0.0043 25.5 9.2 81 204-288 20-107 (173)
314 PRK14644 hypothetical protein; 45.2 1.9E+02 0.0041 24.5 9.0 77 200-286 5-86 (136)
315 cd04892 ACT_AK-like_2 ACT doma 44.0 1E+02 0.0022 20.9 8.4 32 184-215 2-36 (65)
316 cd04890 ACT_AK-like_1 ACT doma 43.9 39 0.00085 23.7 3.8 37 190-230 11-47 (62)
317 cd04918 ACT_AK1-AT_2 ACT domai 42.9 1.2E+02 0.0026 21.6 8.5 42 262-306 3-47 (65)
318 PRK14634 hypothetical protein; 40.2 2.5E+02 0.0053 24.3 10.0 78 273-352 9-91 (155)
319 cd04936 ACT_AKii-LysC-BS-like_ 40.1 1.2E+02 0.0026 20.7 7.9 42 51-96 3-47 (63)
320 COG3603 Uncharacterized conser 38.1 63 0.0014 26.8 4.4 26 269-296 75-100 (128)
321 cd04914 ACT_AKi-DapG-BS_1 ACT 37.9 74 0.0016 23.1 4.6 31 262-292 3-34 (67)
322 PRK14636 hypothetical protein; 36.8 3E+02 0.0065 24.4 10.3 78 273-352 7-89 (176)
323 PRK00907 hypothetical protein; 36.5 1.5E+02 0.0033 23.4 6.3 63 48-117 17-83 (92)
324 cd04911 ACT_AKiii-YclM-BS_1 AC 36.1 1.1E+02 0.0025 23.1 5.4 56 268-330 12-67 (76)
325 cd04920 ACT_AKiii-DAPDC_2 ACT 35.1 1.6E+02 0.0036 20.8 8.0 27 50-76 2-31 (63)
326 PRK14642 hypothetical protein; 34.9 3.5E+02 0.0075 24.5 9.7 88 195-286 3-101 (197)
327 cd04920 ACT_AKiii-DAPDC_2 ACT 34.4 1.7E+02 0.0037 20.8 8.1 27 184-210 2-31 (63)
328 cd07247 SgaA_N_like N-terminal 33.0 1.6E+02 0.0035 22.7 6.2 51 180-236 60-110 (114)
329 cd04923 ACT_AK-LysC-DapG-like_ 32.9 1.6E+02 0.0035 20.0 8.0 31 50-80 2-35 (63)
330 cd04914 ACT_AKi-DapG-BS_1 ACT 32.7 74 0.0016 23.1 3.8 30 184-213 3-33 (67)
331 PTZ00324 glutamate dehydrogena 32.5 2.2E+02 0.0048 32.2 8.9 41 56-96 241-282 (1002)
332 PLN02550 threonine dehydratase 31.3 6.7E+02 0.015 26.7 17.2 125 47-214 416-541 (591)
333 PRK14630 hypothetical protein; 29.6 3.6E+02 0.0077 23.0 9.2 77 273-355 10-91 (143)
334 PTZ00324 glutamate dehydrogena 29.1 3.6E+02 0.0078 30.6 9.8 66 169-234 216-286 (1002)
335 PRK14638 hypothetical protein; 28.6 3.8E+02 0.0082 23.0 9.2 79 275-356 12-95 (150)
336 PF02576 DUF150: Uncharacteris 27.5 3.5E+02 0.0076 22.7 7.7 53 277-331 2-54 (141)
337 PRK02047 hypothetical protein; 26.6 3.1E+02 0.0068 21.4 6.8 49 47-95 15-67 (91)
338 PRK14645 hypothetical protein; 25.4 4.4E+02 0.0096 22.7 10.4 80 273-354 11-95 (154)
339 cd07261 Glo_EDI_BRP_like_11 Th 25.3 1.5E+02 0.0033 22.9 4.8 52 181-236 59-110 (114)
340 PRK02001 hypothetical protein; 25.1 4.5E+02 0.0097 22.7 8.5 82 200-288 12-93 (152)
341 cd07247 SgaA_N_like N-terminal 24.8 2.4E+02 0.0052 21.6 5.9 50 259-314 61-110 (114)
342 PRK02047 hypothetical protein; 24.7 3.4E+02 0.0074 21.2 7.0 63 182-250 16-82 (91)
343 PRK08961 bifunctional aspartat 24.2 1E+03 0.022 26.5 15.4 33 47-79 321-356 (861)
344 cd04934 ACT_AK-Hom3_1 CT domai 23.4 71 0.0015 23.7 2.3 54 190-251 12-65 (73)
345 PRK05925 aspartate kinase; Pro 22.6 8.3E+02 0.018 24.9 12.3 111 181-307 299-417 (440)
346 PRK14631 hypothetical protein; 22.6 5.4E+02 0.012 22.7 9.7 83 274-358 11-114 (174)
347 cd07253 Glo_EDI_BRP_like_2 Thi 22.1 1.9E+02 0.0041 22.3 4.8 50 184-236 70-120 (125)
348 PRK08841 aspartate kinase; Val 22.0 4.4E+02 0.0096 26.4 8.3 33 46-78 316-348 (392)
349 cd04915 ACT_AK-Ectoine_2 ACT d 20.7 3.3E+02 0.0071 19.5 8.8 31 183-213 3-35 (66)
350 PF04083 Abhydro_lipase: Parti 20.7 2.8E+02 0.0061 20.1 4.9 33 200-232 2-34 (63)
351 PRK00341 hypothetical protein; 20.4 3.6E+02 0.0079 21.0 5.9 61 183-250 18-82 (91)
352 PF04083 Abhydro_lipase: Parti 20.4 2.6E+02 0.0055 20.3 4.7 31 66-96 2-32 (63)
353 PRK14643 hypothetical protein; 20.3 5.8E+02 0.013 22.2 9.6 79 275-355 13-98 (164)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=273.16 Aligned_cols=188 Identities=14% Similarity=0.202 Sum_probs=163.8
Q ss_pred CCc-eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHH
Q 017375 36 SMR-SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIK 113 (372)
Q Consensus 36 ~~~-~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~ 113 (372)
++. .++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++ +++++++|+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~-~~~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLL-EFDRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCC-CHHHHHHHH
Confidence 344 788888999999999999999999999999999999999999999 7999999999999 588888 467899999
Q ss_pred HHHHHhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCc
Q 017375 114 ELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRP 193 (372)
Q Consensus 114 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~Drp 193 (372)
+.|.++|.+..... .. +|.. +.. +++..+|+|.|+|+.+..+|+|+|.++|||
T Consensus 742 ~~L~~aL~~~~~~~---~~---------~~~~------~~~---------~~~~~~~~V~~dn~~s~~~T~iev~a~Drp 794 (854)
T PRK01759 742 QALTKALNTNKLKK---LN---------LEEN------HKL---------QHFHVKTEVRFLNEEKQEQTEMELFALDRA 794 (854)
T ss_pred HHHHHHHcCCCCcc---hh---------cccc------ccc---------cCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence 99999998765321 00 0100 000 356688999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 194 KLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 194 GLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
||||+|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.+++++.+ ++|+++|.++|
T Consensus 795 GLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 795 GLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988644 99999998876
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=5.4e-29 Score=269.17 Aligned_cols=187 Identities=20% Similarity=0.243 Sum_probs=163.4
Q ss_pred eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|++ .+|.++ +++++++|++.|.
T Consensus 692 ~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~~L~ 769 (884)
T PRK05007 692 LLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRKALE 769 (884)
T ss_pred EEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999999995 679999999999 588888 4678999999999
Q ss_pred HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375 118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF 197 (372)
Q Consensus 118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~ 197 (372)
++|.+..... . . .+|.. +.. +++..+|+|.|+|+.+..+|+|+|.++|||||||
T Consensus 770 ~aL~~~~~~~---~-~-------~~~~~------~~~---------~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~ 823 (884)
T PRK05007 770 QALTQSSPQP---P-K-------PRRLP------AKL---------RHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLA 823 (884)
T ss_pred HHHcCCCCCc---c-c-------ccccc------ccc---------CCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHH
Confidence 9998764321 1 1 11110 000 4566889999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375 198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
+|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.++++ ++.+.|+++|.++|+
T Consensus 824 ~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~-~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 824 RVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNE-ELQQELRQRLTEALN 879 (884)
T ss_pred HHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCH-HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999984 588999999998885
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.3e-28 Score=263.44 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=149.3
Q ss_pred CCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeeCCCCCCCCHHHHHH
Q 017375 166 EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERER 244 (372)
Q Consensus 166 ~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T-~g~~~~d~F~V~~~~g~~~~~~~~~e~ 244 (372)
...+|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|.+++|.++.+ +++++
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~-~~~~~ 739 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEF-DRRRQ 739 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCH-HHHHH
Confidence 3457888899999999999999999999999999999999999999999998 789999999999999998864 68999
Q ss_pred HHHHHHHHHhcc-----------------C-----------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 245 VIQCLKAAIERR-----------------V-----------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 245 l~~~L~~~L~~r-----------------~-----------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
|++.|..+|.++ . +..|+|||.+.|||||||+|+++|.++|++|+.|||+|.
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ 819 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI 819 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence 999999998531 0 125999999999999999999999999999999999999
Q ss_pred CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 297 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 297 g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
|++++|+|||+|..|.|++++..++|+++|.+++
T Consensus 820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 9999999999999999998765599999998865
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.6e-28 Score=262.76 Aligned_cols=163 Identities=21% Similarity=0.320 Sum_probs=150.2
Q ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375 168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVI 246 (372)
Q Consensus 168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~ 246 (372)
.+|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.+ |+++|+|+|++.+|.+++. +++++++
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence 5688889999999999999999999999999999999999999999999976 6999999999999998854 6899999
Q ss_pred HHHHHHHhcc-----------------------------CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 247 QCLKAAIERR-----------------------------VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 247 ~~L~~~L~~r-----------------------------~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
+.|.++|.++ .+..|+|||.+.|||||||+|+++|+++|++|++|+|+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999998532 01259999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375 298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 331 (372)
Q Consensus 298 ~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~ 331 (372)
++++|+|||++..|.+++++.+++|+++|.+++.
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998788999999999884
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=7.5e-28 Score=260.34 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=159.6
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCC-CHHHHHHHHHHHHHhhcCC
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAIS-DPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~-~~~~~~~l~~~L~~~L~~~ 123 (372)
.+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++. +++++++|++.|.++|.++
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999988 5899999999999 5787753 4589999999999999886
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL 203 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L 203 (372)
...+ ..+ .+|... .. +++..+|.|.++++.+.++|+|+|+++||||||++|+++|
T Consensus 781 ~~~~---~~~-------~~~~~~------~~---------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L 835 (895)
T PRK00275 781 DDYP---TII-------QRRVPR------QL---------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF 835 (895)
T ss_pred Cccc---hhh-------hhhhhh------hc---------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence 5431 111 122111 00 3456789999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375 204 TDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 255 (372)
Q Consensus 204 ~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~ 255 (372)
+.+|+||++|+|.|.|++++|+|||++.+|.++.++.++++|++.|.++|..
T Consensus 836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998877899999999999853
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.95 E-value=1e-26 Score=251.82 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=162.6
Q ss_pred eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++.+++++++|++.|.
T Consensus 659 ~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~ 737 (850)
T TIGR01693 659 LIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLV 737 (850)
T ss_pred EEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHH
Confidence 566656689999999999999999999999999999999999995 6999999999999 58888878778999999999
Q ss_pred HhhcCCCCCCcccccccccccchhhh-hhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHH
Q 017375 118 NVLKGSNKSGLAKTEVSQDVTHTERR-LHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLV 196 (372)
Q Consensus 118 ~~L~~~~~~~~~~~~l~~~~~~~~rR-l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL 196 (372)
++|.+....+ ..+. .++ .. +.. +++..+|.|.|+|+.+..+|+|+|.++||||||
T Consensus 738 ~~L~~~~~~~---~~~~------~~~~~~------~~~---------~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll 793 (850)
T TIGR01693 738 DVLAGLAKDP---DTIS------ARRARR------RRL---------QHFAVPPRVTILNTASRKATIMEVRALDRPGLL 793 (850)
T ss_pred HHHcCCCccc---cccc------cccCCc------ccc---------cCCCCCCeEEEccCCCCCeEEEEEEECCccHHH
Confidence 9998754321 1110 000 00 000 356688999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 197 FDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 197 ~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
++|+++|+++|+||++|+|.|.|+++.|+|||++..|.++++ ++++.|+++|.++|
T Consensus 794 ~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 794 ARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988 58899999998876
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=8.9e-27 Score=250.64 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=155.3
Q ss_pred cCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc
Q 017375 43 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 121 (372)
Q Consensus 43 ~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 121 (372)
.+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|.++|+|+|.++ .|.+ ++++++|++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 56678999999999999999999999999999999999999 69999999999984 5653 3578899999999998
Q ss_pred CCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHH
Q 017375 122 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC 201 (372)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~ 201 (372)
++.... .+. .+|.. +.. +++..+|+|.++++.+.++|+|+|+++||||||++|++
T Consensus 761 ~~~~~~----~~~------~~~~~------~~~---------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~ 815 (869)
T PRK04374 761 GDLQKV----RPA------RRAVP------RQL---------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH 815 (869)
T ss_pred CCCCcc----ccc------cccCc------ccc---------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence 865321 121 01110 010 45678899999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375 202 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 202 ~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
+|+.+|+||++|+|+|.|++++|+|||++++|.++.++++ +.|+++|.++|+
T Consensus 816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999998877544 999999998874
No 8
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=5.7e-26 Score=247.65 Aligned_cols=193 Identities=21% Similarity=0.390 Sum_probs=165.7
Q ss_pred eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+++....+.++|+|+++||||||++|+++|+.+||||++|+|+| .+|+++|+|+|++ .+|.+..+++++++|++.|.
T Consensus 723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~ 801 (931)
T PRK05092 723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIE 801 (931)
T ss_pred EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHH
Confidence 466777789999999999999999999999999999999999999 6899999999998 57877767889999999999
Q ss_pred HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375 118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF 197 (372)
Q Consensus 118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~ 197 (372)
+++.+...+. ..+ .+|... .+.. +++..+|.|.|+|+.+.++|+|+|+++||||||+
T Consensus 802 ~~l~~~~~~~---~~~-------~~r~~~----~~~~---------~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~ 858 (931)
T PRK05092 802 DALSGEVRLP---EAL-------AKRTKP----KKRA---------RAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLY 858 (931)
T ss_pred HHHcCCCCCc---ccc-------ccccCc----cccc---------cCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHH
Confidence 9998764431 111 111000 0000 3566789999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375 198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER 255 (372)
Q Consensus 198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~ 255 (372)
+|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.++++++.|++.|.++|.+
T Consensus 859 ~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 859 DLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred HHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998877899999999999964
No 9
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=247.50 Aligned_cols=186 Identities=17% Similarity=0.252 Sum_probs=155.6
Q ss_pred eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|.++|+|+|.++ +|. ..+++++++|++.|.
T Consensus 669 ~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~ 746 (856)
T PRK03059 669 RARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELA 746 (856)
T ss_pred EEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHH
Confidence 455666779999999999999999999999999999999999988 69999999999984 555 456679999999999
Q ss_pred HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375 118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF 197 (372)
Q Consensus 118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~ 197 (372)
++|.++.... ..+ .+|.. +.. +.+..++.|.++++.+.++|+|+|+++||||||+
T Consensus 747 ~~l~~~~~~~---~~~-------~~~~~------~~~---------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa 801 (856)
T PRK03059 747 ERLAEQAPLP---EPS-------KGRLS------RQV---------KHFPITPRVDLRPDERGQYYILSVSANDRPGLLY 801 (856)
T ss_pred HHHcCCCCcc---hhh-------ccccc------ccc---------cCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHH
Confidence 9998865331 111 11110 010 4567789999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375 198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
+|+++|+.+|+||++|+|+|.|++++|+|||.+ .+..+++++++|++.|.++|+
T Consensus 802 ~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 802 AIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999953 334566789999999988774
No 10
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=1.7e-25 Score=242.28 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=148.8
Q ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375 168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID-AEGPEAYQEYFIRHIDGSPVKSDAERERVI 246 (372)
Q Consensus 168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~-T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~ 246 (372)
..|.|.+++....++|+|+|+++||||||++|+++|+.+|+||++|+|+ |.+++++|+|||++.+|.++.+++++++++
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 3578888887778999999999999999999999999999999999999 568999999999999999988877899999
Q ss_pred HHHHHHHhcc------------C--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 247 QCLKAAIERR------------V--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 247 ~~L~~~L~~r------------~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
+.|.++|.++ . +..|+|+|.|.|||||||+|+++|+++|++|++|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 9999998531 0 1259999999999999999999999999999999999
Q ss_pred ecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 295 TKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 295 T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
|.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998888899999998875
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=239.13 Aligned_cols=183 Identities=21% Similarity=0.264 Sum_probs=149.8
Q ss_pred eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
.+++.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|.++|+|+|++ ..|.+. .++++++.|.+
T Consensus 591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~ 664 (774)
T PRK03381 591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRR 664 (774)
T ss_pred EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHH
Confidence 455566 799999999999999999999999999999999999999999999999998 466543 35889999999
Q ss_pred hhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHH
Q 017375 119 VLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFD 198 (372)
Q Consensus 119 ~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~ 198 (372)
+|.+..... ..+. +|... + ..+.. +.+..++.|.++++.+.++|+|+|+++||||||++
T Consensus 665 ~L~~~~~~~---~~~~-------~~~~~-~-~~~~~---------~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~ 723 (774)
T PRK03381 665 ALDGDLDVL---ARLA-------AREAA-A-AAVPV---------RRPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR 723 (774)
T ss_pred HHcCCCchh---hhhh-------ccccc-c-ccccc---------ccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence 998854321 1110 11000 0 00000 35667899999999999999999999999999999
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
|+++|+++|+||++|+|.|.|++++|+|||++.+|.+++++ .+.|+++|.
T Consensus 724 Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 724 LARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 99999999999999999999999999999999999999873 677777664
No 12
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=234.95 Aligned_cols=166 Identities=21% Similarity=0.335 Sum_probs=145.7
Q ss_pred CCEEEEEecCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCC-CHHHHH
Q 017375 169 RPNVNVVNCYD---KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVK-SDAERE 243 (372)
Q Consensus 169 ~~~V~i~~~~~---~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~-~~~~~e 243 (372)
.+.|.+.+... .+++.|.|+++||||||+++|++|+.+|+||++|+|+|. +|+++|+|+|.+++|.++. ++++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~ 767 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIE 767 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHH
Confidence 45566766654 589999999999999999999999999999999999876 5899999999999999854 346899
Q ss_pred HHHHHHHHHHhccC------------------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 244 RVIQCLKAAIERRV------------------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 244 ~l~~~L~~~L~~r~------------------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
+|++.|..+|.++. +..|.|+|.+.||||||++|+++|+.+|++|+.|+|
T Consensus 768 ~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI 847 (895)
T PRK00275 768 QIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI 847 (895)
T ss_pred HHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEE
Confidence 99999999885310 125999999999999999999999999999999999
Q ss_pred eecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhccc
Q 017375 294 ATKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILKVK 334 (372)
Q Consensus 294 ~T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~~~ 334 (372)
.|.|+++.|+|||++..|.|+++ +.+++|+++|.+++.+..
T Consensus 848 ~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 848 ATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred EecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999966 588999999999885444
No 13
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.9e-25 Score=226.32 Aligned_cols=185 Identities=21% Similarity=0.336 Sum_probs=153.9
Q ss_pred ecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 40 VGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 40 ~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
+++....+.++|+|+++|+|.||+.+|+.+...|+||++|+|+| .+|++.|+|+|++ .+|.++. +.+...++..|.+
T Consensus 676 ~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~ 753 (867)
T COG2844 676 ISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIE 753 (867)
T ss_pred eeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHH
Confidence 34455568999999999999999999999999999999999999 5999999999999 4888885 6677778888888
Q ss_pred hhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHH
Q 017375 119 VLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFD 198 (372)
Q Consensus 119 ~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~ 198 (372)
++......+ .. .+|.+ +.. ++|..+|.|.|.++.+..+|+++|.+.||||||++
T Consensus 754 ~l~s~~~~~----~~-------~~r~~------r~~---------~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~ 807 (867)
T COG2844 754 ALLSGKAQP----PR-------RRRIP------RKL---------RHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAA 807 (867)
T ss_pred HHhcCCCCC----cc-------ccccC------ccc---------ceeccCCceeeccccCCCceEEEEEeCCcccHHHH
Confidence 776543221 01 11211 010 46788999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
++++|++++++|++|+|.|.|+++.|+|||++..|.+++++ ..+.+.+.|.+++
T Consensus 808 v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al 861 (867)
T COG2844 808 LAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL 861 (867)
T ss_pred HHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999664 5566666666655
No 14
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1e-23 Score=226.99 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=139.9
Q ss_pred CCEEEEEe-cCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375 169 RPNVNVVN-CYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVI 246 (372)
Q Consensus 169 ~~~V~i~~-~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~ 246 (372)
.+.|.+.. .+..+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|.+++|.. . +++++++
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~-~~~~~i~ 752 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--D-GDPQRLA 752 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--h-HHHHHHH
Confidence 34455433 667799999999999999999999999999999999999985 69999999999988874 2 4788899
Q ss_pred HHHHHHHhcc----------C--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 247 QCLKAAIERR----------V--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 247 ~~L~~~L~~r----------~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
+.|..+|.++ . +..|.|+|.+.|||||||+|+++|+++|++|+.|+|+|.
T Consensus 753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 9999988531 0 125999999999999999999999999999999999999
Q ss_pred CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375 297 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 331 (372)
Q Consensus 297 g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~ 331 (372)
|+++.|+|||++..|.+++++..++|+++|.+++-
T Consensus 833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999877555999999998873
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.4e-24 Score=217.86 Aligned_cols=165 Identities=23% Similarity=0.315 Sum_probs=147.8
Q ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375 168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVI 246 (372)
Q Consensus 168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~ 246 (372)
..|.|.+......+.|.|.|+++|+|.||+.++.++...|+||++|+|+|.. |++.|+|+|.+++|.++.. ++...++
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~-dr~~~~~ 748 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEE-DRRAALR 748 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccch-hHHHHHH
Confidence 4577777777778999999999999999999999999999999999999865 8999999999999999884 6888888
Q ss_pred HHHHHHHhc---------cC--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 247 QCLKAAIER---------RV--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 247 ~~L~~~L~~---------r~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
..|.+++.. |. .+.|+|||.+.||||||++|+++|++++++|++|+|+|.|
T Consensus 749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G 828 (867)
T COG2844 749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828 (867)
T ss_pred HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence 888888742 10 1259999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcc
Q 017375 298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKV 333 (372)
Q Consensus 298 ~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~ 333 (372)
++++|+|||++..|.+++.+..+.+.+.+.+++...
T Consensus 829 ErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 829 ERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred ccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888888888888877544
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=3.8e-23 Score=225.60 Aligned_cols=165 Identities=21% Similarity=0.270 Sum_probs=148.1
Q ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375 168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERERVI 246 (372)
Q Consensus 168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T-~g~~~~d~F~V~~~~g~~~~~~~~~e~l~ 246 (372)
.++.|.+.+....+++.|+|+++||||||++|+++|+.+|+||++|+|+| .++++.|+|+|.+++|.+..+++++++|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 45778888888889999999999999999999999999999999999998 56999999999999998877777999999
Q ss_pred HHHHHHHhc----------c-CC---------------------CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 247 QCLKAAIER----------R-VS---------------------EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 247 ~~L~~~L~~----------r-~~---------------------~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
+.|..++.+ + .+ ..|.|+|.+.||||||++|+++|+++|++|.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 999988732 1 11 249999999999999999999999999999999999
Q ss_pred ecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhc
Q 017375 295 TKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILK 332 (372)
Q Consensus 295 T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~ 332 (372)
|.|+++.|+|||++..|.++.+ +.+++|+++|.+++..
T Consensus 878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999865 5788999999988843
No 17
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.1e-23 Score=221.77 Aligned_cols=154 Identities=26% Similarity=0.346 Sum_probs=135.1
Q ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHH
Q 017375 168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQ 247 (372)
Q Consensus 168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~ 247 (372)
..+.|.+.+.. .+.+.|+|+++||||||++||++|+.+|+||++|+|+|.+|++.|+|+|.++.|.+. .++++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence 35778888877 899999999999999999999999999999999999998899999999999888653 3577777
Q ss_pred HHHHHHhc----------c--C----------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 248 CLKAAIER----------R--V----------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 248 ~L~~~L~~----------r--~----------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
.|..+|.+ + . ...|+|+|.+.||||||++||++|+++|+||++|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 77776642 1 0 014999999999999999999999999999999999
Q ss_pred eecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHH
Q 017375 294 ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG 327 (372)
Q Consensus 294 ~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~ 327 (372)
.|.|+++.|+|||++..|.+++++ ++.|+++|.
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999876 777777764
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=219.46 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=137.5
Q ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHH
Q 017375 169 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQ 247 (372)
Q Consensus 169 ~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~ 247 (372)
.+.|.+.+....+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|.++|+|+|.+++|. ...+++++++++
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~ 743 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH 743 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence 46666888888899999999999999999999999999999999999875 6999999999998777 445569999999
Q ss_pred HHHHHHhcc------------------------------CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 248 CLKAAIERR------------------------------VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 248 ~L~~~L~~r------------------------------~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
.|..+|.++ .+..|.|+|.+.|||||||+||.+|+.+|++|+.|+|.|.|
T Consensus 744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~ 823 (856)
T PRK03059 744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG 823 (856)
T ss_pred HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 999988531 01259999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCC-CHHHHHHHHHHHHHhh
Q 017375 298 GKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTI 330 (372)
Q Consensus 298 ~~~~d~F~v~~~~g~~~-~~~~~~~l~~~l~~~~ 330 (372)
+++.|+|||++. +. ++++++.|+++|.+++
T Consensus 824 ~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 824 ERVEDTFLIDGS---GLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHh
Confidence 999999999533 34 4568899999998765
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=5.8e-20 Score=139.44 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=68.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhc
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILK 332 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~ 332 (372)
.|+|||.++|||||||+|+++|.++|++|++|+|+|+|+++.|+|||++.+|.|+.+ ++++.|+++|.+++.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999999965 5789999999988743
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=1.1e-19 Score=136.87 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-HHHHHHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD-AKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~-~~~~~~l~~~l~~ 328 (372)
.|+|||.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||++..|.|++ ++.++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 48999999999999999999999999999999999999999999999999999996 4688899998764
No 21
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=3.4e-19 Score=135.24 Aligned_cols=75 Identities=67% Similarity=1.153 Sum_probs=72.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR 256 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r 256 (372)
+|+|+|.|+||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.++.++++.+.|+++|.++|.+|
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999889999999999999764
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=1.2e-18 Score=132.19 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=65.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe--ecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA--TKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTIL 331 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~--T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~ 331 (372)
|+|+|.+.|||||||+|+++|+++|++|++|+|+ |+|++++|+||| +..|.++++ ++++.|+++|.++++
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 999999999999 888989854 688999999998874
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=1.6e-17 Score=125.22 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=65.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++.+|.++.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999998778888888775
No 24
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2.4e-16 Score=120.35 Aligned_cols=73 Identities=63% Similarity=0.953 Sum_probs=67.2
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCC-CCCCCCHHHHHHHHHHHHHhhcC
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEET-GGAISDPERLSVIKELLCNVLKG 122 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~-g~~i~~~~~~~~l~~~L~~~L~~ 122 (372)
|.|+|+++||||||++|+++|+.+||||++|+|+|.++++.|+|+|+++ + +.++.+++++++|++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999999999999999984 5 77787888999999999988753
No 25
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.69 E-value=4.7e-16 Score=139.29 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=110.0
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh----
Q 017375 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE---- 254 (372)
Q Consensus 179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~---- 254 (372)
...+.+|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|. +.+ ...+.|+..|...-.
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence 346889999999999999999999999999999999999999998888884 332 245666666554321
Q ss_pred ----ccC--------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCCHHHHH
Q 017375 255 ----RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIID 320 (372)
Q Consensus 255 ----~r~--------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~--~~~d~F~v~~~~g~~~~~~~~~ 320 (372)
++. +..+.++|.|.||||++++||++|+++|+||..++..|++. ...+.|.+.-.-..|.+. .++
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-~~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-DAA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-CHH
Confidence 121 12489999999999999999999999999999999999985 677888886555555443 234
Q ss_pred HHHHHHH
Q 017375 321 SIRQSIG 327 (372)
Q Consensus 321 ~l~~~l~ 327 (372)
.|+++|.
T Consensus 157 ~L~~~l~ 163 (190)
T PRK11589 157 NIEQAFK 163 (190)
T ss_pred HHHHHHH
Confidence 4555444
No 26
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=2.7e-16 Score=119.43 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=67.1
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~--T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
|+++|.++|||||||+|+++|+++|++|+.|+|. |.|++++|+||| +.+|.++.++++.+.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999 999999999999 7889899887789999999998875
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=4.7e-16 Score=118.33 Aligned_cols=72 Identities=32% Similarity=0.507 Sum_probs=65.2
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
.++|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++ .++.++.+++++++|++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999997 799999999998 57877777889999999988754
No 28
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2.7e-15 Score=115.11 Aligned_cols=72 Identities=31% Similarity=0.353 Sum_probs=64.4
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
.++|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|+++ .+. ..+++++++|++.|.++|.+.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHchh
Confidence 6899999999999999999999999999999997 79999999999984 555 456789999999999988653
No 29
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=4.4e-15 Score=113.29 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=67.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID-GSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~-g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
|+|+|+++||||||++|+++|+.+|+||++|+|+|.++++.|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999987 8888777789999999998874
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=7.2e-15 Score=111.76 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=65.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
+.|+|+++||||||++++++|+.+|+||++|+|.|. +++++|+|+|++++|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 59999999999999988877679999999987754
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=3.3e-14 Score=109.04 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=63.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee-cCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT-KSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 331 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T-~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~ 331 (372)
++||.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||+|..|...+++++++++++|.+++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999996 899999999999987774455688889999988764
No 32
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.52 E-value=5e-13 Score=119.83 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred CCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 44 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 44 ~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
++..+.+|+++|+||||+.+.++++|+++||||.+.+....+|.+.-++.|+.+ + ..+++|+..|.. +...
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-----~---~~~~~le~~L~~-l~~~ 74 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-----W---NAITLIESTLPL-KGAE 74 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-----h---hHHHHHHHHHHh-hhhh
Confidence 356789999999999999999999999999999999999999999999988542 2 356788877764 3322
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL 203 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L 203 (372)
..+ ...+ +|.. . +. .. .......|+|++.||||++++++++|
T Consensus 75 ~~L---~i~v--------~~~~-------~-----------~~--~~-------~~~~~~~v~v~G~DrPGIV~~vT~~l 116 (190)
T PRK11589 75 LDL---LIVM--------KRTT-------A-----------RP--RP-------AMPATVWVQVEVADSPHLIERFTALF 116 (190)
T ss_pred cCe---EEEE--------Eecc-------c-----------cc--cc-------cCCceEEEEEEECCCCCHHHHHHHHH
Confidence 222 1111 1110 0 00 00 01113689999999999999999999
Q ss_pred HhCCceEEEEEEEeeCC------eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375 204 TDMQYVVFHANIDAEGP------EAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 252 (372)
Q Consensus 204 ~~~glnI~~A~I~T~g~------~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~ 252 (372)
+++|+||.+-+-.|.+. .+.-.|.+.-|.+.. .+.|+..|...
T Consensus 117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l 165 (190)
T PRK11589 117 DSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKAL 165 (190)
T ss_pred HHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHH
Confidence 99999999988887752 455556665554432 34455555444
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.48 E-value=1.9e-13 Score=117.68 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=112.7
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----- 254 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~----- 254 (372)
.+|.+|+++++||||+...++++..++||||.++++...|+.+.-+..|. |.| +...+|+..|...=.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence 46789999999999999999999999999999999999999988777775 443 345566665543211
Q ss_pred ---ccC--------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHH
Q 017375 255 ---RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDS 321 (372)
Q Consensus 255 ---~r~--------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~ 321 (372)
.|. +..+.++|.+.||||++.++|++|..+|++|+++...|+ .......|++.-.-+.|.+. .+..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~-~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL-SISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC-cHHH
Confidence 121 236999999999999999999999999999999999998 34577799997667778776 4566
Q ss_pred HHHHHHH
Q 017375 322 IRQSIGQ 328 (372)
Q Consensus 322 l~~~l~~ 328 (372)
|+++|+.
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 6666554
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.45 E-value=7e-13 Score=98.74 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=54.8
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
.+|.|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.+ .+|. ++ +.|++.|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~---~~---~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG---ET---AALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc---ch---HHHHHHHHHhh
Confidence 57999999999999999999999999999999998 5899999999998 4553 22 45666665544
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.43 E-value=1.3e-12 Score=99.13 Aligned_cols=67 Identities=31% Similarity=0.495 Sum_probs=60.2
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
++|+|+++||||+|++|+++|+.+|+||++|+++|.++++.|+|+|++ .++.++ +++++++|++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999998889999999998 477777 6678888877764
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.38 E-value=2.3e-11 Score=128.09 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=117.3
Q ss_pred EEEEEEe-cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 017375 49 TAIELTG-SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG 127 (372)
Q Consensus 49 t~i~v~~-~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 127 (372)
-.++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.++..|.|.. ..|.+. ++ ..+++.+...+.++.+..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCcc
Confidence 5777777 9999999999999999999999999999 889999999998 577765 55 678888888887765431
Q ss_pred cccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCC
Q 017375 128 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ 207 (372)
Q Consensus 128 ~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~g 207 (372)
...+|.+.|.. ++++|.+.||+|+|+.++++|.
T Consensus 621 --------------------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~--- 653 (693)
T PRK00227 621 --------------------------------------APGITATFWHG------NILEVRTEDRRGALGALLGVLP--- 653 (693)
T ss_pred --------------------------------------cCCCCceEeeC------cEEEEEeCccccHHHHHHHHhh---
Confidence 01346666653 7999999999999999999999
Q ss_pred ceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 208 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 208 lnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
+|.+|++.|.|..++|.|++.. | .....++..+..+|
T Consensus 654 -~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~ 690 (693)
T PRK00227 654 -DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL 690 (693)
T ss_pred -hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence 8999999999999999999972 1 12355666666655
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.34 E-value=9.6e-12 Score=94.30 Aligned_cols=69 Identities=64% Similarity=0.971 Sum_probs=62.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
++.|+|.++||||+|++|+.+|+++|++|.+|++.|.++.+.|+|+|.+.+|.+++++++++++++|+.
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~ 69 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGP 69 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999988999999999999988866677888888764
No 38
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.34 E-value=1.3e-11 Score=130.06 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=101.6
Q ss_pred EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccC----
Q 017375 183 SVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV---- 257 (372)
Q Consensus 183 t~v~V~~-~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~---- 257 (372)
-.++|.. +|++|+|.+++++|+.++++|++|++.+ +|.+...|.|....|.+.+. ..+++.+..++.+..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 621 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA 621 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence 4777777 9999999999999999999999999999 78888999999888877655 566777777765432
Q ss_pred ---C----CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 258 ---S----EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 258 ---~----~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
| .++++||++.||||+|++|+++|. +|.+|+++|.|..+.|+||+.
T Consensus 622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 1 158999999999999999999999 899999999999999999996
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=1.8e-11 Score=91.75 Aligned_cols=70 Identities=43% Similarity=0.633 Sum_probs=62.6
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
|.|.|.++|+||+|++|+++|+.+|+||.++++.|.++.+.|+|+|++ .++.+. +.++|++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999998 477774 6679999999987653
No 40
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=1.7e-11 Score=91.35 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
..|.|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|.+.+|.- -+.|+++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence 478999999999999999999999999999999986 59999999999887742 245666666554
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=4e-11 Score=89.80 Aligned_cols=69 Identities=38% Similarity=0.632 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT 329 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~ 329 (372)
|.++|.++||||+|++|+++|+++|++|.++++.|.++.+.|+|++++..|.+.+.+.+++|+++|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 679999999999999999999999999999999999889999999999999987667888899988765
No 42
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.19 E-value=2.3e-10 Score=98.81 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN 124 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 124 (372)
++++.+|++++.||||+...|+++..++||||.++|+.+.|+.+.-+..|+-+ | +...+|++.|. .+..+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~---dav~~le~~l~-~l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----W---DAVTLLEATLP-LLGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----H---HHHHHHHHHhh-cccccC
Confidence 45679999999999999999999999999999999999999999999988742 3 45678888775 344444
Q ss_pred CCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHH
Q 017375 125 KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLT 204 (372)
Q Consensus 125 ~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~ 204 (372)
++ ...+ .|.. + .++ ....-.+.+.|.+.||||++.++++.|.
T Consensus 73 ~L---~v~m--------~rt~-------~--------------~~~------~a~~~~v~v~v~a~DrpgIv~~~T~lf~ 114 (176)
T COG2716 73 DL---LVVM--------KRTG-------A--------------HPT------PANPAPVWVYVDANDRPGIVEEFTALFD 114 (176)
T ss_pred Ce---EEEE--------eecC-------C--------------Ccc------CCCCceEEEEEEecCCccHHHHHHHHHH
Confidence 43 1111 1110 0 000 0122346899999999999999999999
Q ss_pred hCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375 205 DMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 252 (372)
Q Consensus 205 ~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~ 252 (372)
.+|+||.+....|.. +.-.-.|.+.-.-+-|..- ....|++++++.
T Consensus 115 ~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al 162 (176)
T COG2716 115 GHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEAL 162 (176)
T ss_pred hcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHH
Confidence 999999988887753 2222234443222223322 334555555544
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.01 E-value=3.6e-09 Score=78.78 Aligned_cols=69 Identities=38% Similarity=0.623 Sum_probs=59.7
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
+.|.|.++|+||+|++|+++|+.+|++|.++++.+.+++..++|+|..+ ++.+. +++++++|++.|.+.
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999999976688899999884 55554 557889999988764
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.96 E-value=9.6e-09 Score=76.42 Aligned_cols=69 Identities=28% Similarity=0.580 Sum_probs=61.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT 329 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~ 329 (372)
+.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...++|++.+..+.+.+.++.+.+++.|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999998779999999998887776656788888887653
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.67 E-value=2.1e-07 Score=71.13 Aligned_cols=64 Identities=25% Similarity=0.430 Sum_probs=53.6
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
+..|+++++||||+++.++++|+++||||.+.+..+.++.+.-++.|.-+ ++..++|++.|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999989752 34667888888764
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.67 E-value=3.2e-07 Score=70.12 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=53.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
+.+|++.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+ ++..++|+.+|....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999988888653 246678888877653
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.43 E-value=8.4e-07 Score=63.73 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=58.4
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
++|+|.+||+.||=.+|++++.+.|++|..+.+.|.|....-+|+|... ..++ +-+|..|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999862 2222 35899999998754
No 48
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.43 E-value=3.2e-06 Score=61.87 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=47.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGP--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 252 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~--~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~ 252 (372)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ .....+.+.+. ...+.+.+.|.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHcc
Confidence 57889999999999999999999999999999999876 44444444332 3455666666543
No 49
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=1.2e-06 Score=66.76 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=42.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASG 311 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g 311 (372)
+++|.|+||||++++||++|+++|+||...+-.+.++.-.-.|.+.-+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 37899999999999999999999999999998888877666666654433
No 50
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1.3e-06 Score=62.69 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=58.5
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 252 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~ 252 (372)
++|+|.|||+.||=.++++++.+.|++|..+.++|.|.+..-+|+|... ...+. -+|..|+++|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~~~~~--~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-PPSIK--VRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-CCCCc--ccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999853 22332 3899999998764
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=2e-06 Score=65.43 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
+|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+.+. ..+.|++.|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999888888888654331 2355666655443
No 52
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.36 E-value=3.2e-06 Score=64.74 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=49.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.+|++.|+||||+++.++++|+++|+||.+++.++.++++.-...+.-+ +. ..+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence 5899999999999999999999999999999999998888666655432 21 23566666554
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.35 E-value=4.1e-06 Score=61.25 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=45.7
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCC--ceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~--~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
+.|.|.++||||+|++++.+|+++|+||..+.+.+..+ ....++.+.+ ....+++.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999765 3333333333 1333566666654
No 54
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.34 E-value=2.8e-06 Score=65.06 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=50.5
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
..|++.|+||||+.+.++++|+++|+||.+.+.++.++.+.-.+.+..+ .. ..+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~----~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WD----AIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cc----cHHHHHHHHHH
Confidence 6789999999999999999999999999999999988887666666531 11 23677777765
No 55
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.27 E-value=5.3e-05 Score=61.69 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=81.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-cCCCceE
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-RVSEGLK 262 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r~~~~t~ 262 (372)
++.|...++||-|+.++.+|.++|+||....|.-.++.-.-.+.|.++ +.-.+.|.++ + -+...-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~--gF~Vr~~dV 71 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEA--GFTVRETDV 71 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHC--CcEEEeeeE
Confidence 678899999999999999999999999999998877665555555322 1222222221 0 0233568
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEE
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYV 306 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v 306 (372)
+-|...|+||-|+.|..+|.+.++|+..+-.-+... .+.=.|-+
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence 888999999999999999999999999988876543 44444443
No 56
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=4.6e-06 Score=63.16 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=45.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+|++.|+||||++++||++|+++|+||...+..+.. ....|++.-.-..|-.+-..+.|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999988742 22358775332333210124556655544
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.04 E-value=1.3e-05 Score=61.56 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=47.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~--~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+.+.++|+||++++||++|+++|+||...+..|.+.. ....|+++-.-..|-+ ....+|++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG-TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC-CCHHHHHHHHHH
Confidence 37899999999999999999999999999999998742 4456665433222311 124555555544
No 58
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=1.5e-05 Score=62.61 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=39.0
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 306 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v 306 (372)
.++.+.|+||||++++||++|+++|+||...+-.+.+++..=.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v 47 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIV 47 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEE
Confidence 5789999999999999999999999999999998876554334444
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=1.9e-05 Score=62.01 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=51.2
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
..|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.|.-+ +... + .+.|++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~-~---~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL-D---FAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC-C---HHHHHHHHHH
Confidence 4789999999999999999999999999999999988887777777642 2111 1 3677777765
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=5.6e-05 Score=57.15 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 218 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~ 218 (372)
+|+|.|+||||++++|+++|+++|+||.+.+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 47899999999999999999999999999999874
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.95 E-value=5.3e-05 Score=58.08 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=47.0
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC------CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN------TRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~------~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
.|+|.++|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.|.-| .+ . + .++|++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~-~---~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T-D---LDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C-C---HHHHHHHHHH
Confidence 378999999999999999999999999999999965 444445555432 11 2 2 3677777765
No 62
>PRK00194 hypothetical protein; Validated
Probab=97.95 E-value=3.3e-05 Score=60.72 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=50.4
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
...|+|.++||||++++++++|+++|+||.+.+-.+.++.+.-.+.+.-+ +.+. + .+.|++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH
Confidence 67899999999999999999999999999999988887776666665432 2122 2 2566666664
No 63
>PRK00194 hypothetical protein; Validated
Probab=97.91 E-value=3.3e-05 Score=60.71 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=38.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 306 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v 306 (372)
.+++++.++||||++++|+++|+++|+||...+-.+.++ .||+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~----~~~~ 45 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDG----YFTM 45 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCC----eeEE
Confidence 478999999999999999999999999999999888654 5555
No 64
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.71 E-value=0.0055 Score=50.14 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=80.3
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcc
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLA 129 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~ 129 (372)
.|.|..-++||=|+..+.+|.++|+||..-.|.-.++.-+--+.|..| + . -.+.|++ ..
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d--~---A~~~Lee----~g----- 63 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D--E---AHSVLEE----AG----- 63 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H--H---HHHHHHH----CC-----
Confidence 578899999999999999999999999876666556555555555432 1 1 1122221 10
Q ss_pred cccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCce
Q 017375 130 KTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYV 209 (372)
Q Consensus 130 ~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~gln 209 (372)
| .|.+ .-++-|..+|+||=|.+|+.+|.++++|
T Consensus 64 ------------------------------------F----~Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~diN 96 (142)
T COG4747 64 ------------------------------------F----TVRE-------TDVLAVEMEDVPGGLSRIAEVLGDADIN 96 (142)
T ss_pred ------------------------------------c----EEEe-------eeEEEEEecCCCCcHHHHHHHHhhcCcC
Confidence 0 1111 1378888999999999999999999999
Q ss_pred EEEEEEEeeC-CeEEEEEEEe
Q 017375 210 VFHANIDAEG-PEAYQEYFIR 229 (372)
Q Consensus 210 I~~A~I~T~g-~~~~d~F~V~ 229 (372)
+.....++.. ..+.-.|.+.
T Consensus 97 ldYiYAFv~ek~KAlli~r~e 117 (142)
T COG4747 97 LDYIYAFVTEKQKALLIVRVE 117 (142)
T ss_pred ceeeeeeeecCceEEEEEEhh
Confidence 9999998865 6666555553
No 65
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.70 E-value=0.00023 Score=54.57 Aligned_cols=63 Identities=27% Similarity=0.400 Sum_probs=46.4
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+.+.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.|.- .+.+.+..|-..|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999994 567666776653 24445555544443
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.63 E-value=0.00059 Score=52.25 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=47.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
.+.+.|.+.||||+|++|+.++++.|+||.+.++.+. ++.+.-.|.+.-. +.+.++.+.+.|.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999995 5777777777532 3345666665553
No 67
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.00011 Score=57.19 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=44.3
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
..+|+|.|.||||+.+.|+++|+++|+||....=+-..+.-.=.+.| +. +........+|++|..+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV-~~---~~~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV-DI---SKEVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE-cC---ChHhccHHHHHHHHHHHH
Confidence 46899999999999999999999999999987633333332223333 22 211224456666665443
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.53 E-value=0.0021 Score=61.70 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER---- 255 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~--T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~---- 255 (372)
..+|+|.|+||||+.+.|+++|+++|+||.+.+.+ +..+.+.-.+.+.+...... ..+.|+++|.+.-.+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence 46899999999999999999999999999999997 33344433333332111122 235566655544321
Q ss_pred ----cCCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 256 ----RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 256 ----r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
...+...|-|-.--+..-|.+|-.....-.++.+-.-+
T Consensus 85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v 126 (289)
T PRK13010 85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126 (289)
T ss_pred EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence 11223334444444445566777776666655444333
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0039 Score=59.78 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc---
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA--EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--- 255 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T--~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--- 255 (372)
...+|+|.|+||||+++.|+++|+++|+||.+.+..+ .++.+.-.+.+.- +..+. ..+.|++.|...-+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999999999999999999 6676555555532 11121 245666666544321
Q ss_pred ----c-CCCceEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 017375 256 ----R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT 289 (372)
Q Consensus 256 ----r-~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~ 289 (372)
+ .++...|-|-+--+---|..+-.....-.++.+
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~ 118 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVE 118 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcE
Confidence 1 122233333333334445666666655544433
No 70
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.50 E-value=0.003 Score=60.34 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=68.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc-----
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR----- 256 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r----- 256 (372)
+|+|.|+||||+.+.|+++|+++|+||.+.+.+... +++.-.+.+.-+ +... ..+.|++.|.+++..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 689999999999999999999999999999998853 666655555432 2122 2356666666622211
Q ss_pred ----CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 257 ----VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 257 ----~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
..+...|-|-+--+---|.+|-.....-.++++-.-+
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 1122334444444455678888887776665544433
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.49 E-value=0.00018 Score=56.00 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=49.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
..+|+|.+.||||+.+.++++|+++|+||.+-...-..+++.-.+.|.-+.. .. ....+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~-~~----d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE-VV----DFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH-hc----cHHHHHHHHHHHH
Confidence 4689999999999999999999999999999776666777776676643211 11 2345666555544
No 72
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.48 E-value=0.0003 Score=67.42 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=39.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
.+.++|.|+||||+++.||++|+++|+||..+.-.|.. ..+.|+++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~ 52 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR 52 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence 57899999999999999999999999999999877543 55566664
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0012 Score=49.44 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=46.0
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
+.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.- .+.+.++.+...|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHh
Confidence 6789999999999999999999999998888774 466666666643 23355666666655
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.37 E-value=0.0064 Score=58.28 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=69.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER---- 255 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~---- 255 (372)
..+|+|.|+||||+.+.++++|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|+++|......
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 4689999999999999999999999999999999854 3555545555434331 135566665554321
Q ss_pred ---c-CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 256 ---R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 256 ---r-~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
+ ..+...|-|-+--+---|..+..+...-.++.+-+-+-|
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 1 112234444444455567777777777766554444433
No 75
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0024 Score=47.85 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=46.0
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
+.|.+.||||+|++|+.++++.|.||......+.. +.+...|.+.-. +.+.++.+.+.|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHh
Confidence 67899999999999999999999999998887754 666666666422 2245666666654
No 76
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.32 E-value=0.00094 Score=64.00 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=52.9
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN 124 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 124 (372)
....|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+.- +..+. .++.|++.|.+ +..+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~----~~~~L~~~L~~-l~~~l 77 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIF----NLETLRADFAA-LAEEF 77 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCC----CHHHHHHHHHH-HHHHh
Confidence 5678999999999999999999999999999999999 6775545555542 11112 25678887764 44433
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.24 E-value=0.0013 Score=63.06 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=47.0
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE--ecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW--THNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~--T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
....|+|.|+||||+.+.++++|+++|+||.+.+-+ +..+...-.+.+.+. ....+ + .+.|++.|.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~-~---~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA-S---VDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC-C---HHHHHHHHHH
Confidence 456899999999999999999999999999999998 444444433333321 11123 2 2567776665
No 78
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.22 E-value=0.0014 Score=62.52 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=50.9
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN 124 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~ 124 (372)
.|+|.|+||||+.+.++++|+++|+||.+.+.++. ++++.-.+.+.-+ +.++ + .+.|++.|.+++..+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~-~---~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL-E---ESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC-C---HHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999984 4666666666532 2223 1 2577777765344433
No 79
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.21 E-value=0.0031 Score=48.35 Aligned_cols=66 Identities=15% Similarity=0.314 Sum_probs=46.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+.+.+..+|+||.|++|...|+++|+||.+......+. ...=+|||. .+|. .+.+.+..+-..|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence 46778889999999999999999999999998776644 345578874 4454 333334444444443
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0043 Score=45.50 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=41.4
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEec-----CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-----~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
+.|..+|+||+|++|+.+|+++|+||.+...... .+.+...|.|.- .+.+.++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHH
Confidence 3578899999999999999999999998776653 244444444432 13344555555554
No 81
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.11 E-value=0.0025 Score=56.47 Aligned_cols=66 Identities=15% Similarity=0.350 Sum_probs=47.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
..+.+.+.|+||+|++||.+|+++|+||.+..+..........+.+.-+ | ++..+++|+.+|.+-.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999997633333334444322 1 2334677777776643
No 82
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.07 E-value=0.0035 Score=47.27 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=33.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCe
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPE 221 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~ 221 (372)
.+.|.+.||+|+|++|+.++++.|+||.+..+.+. +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999999876 44
No 83
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.06 E-value=0.0022 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=39.8
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEec
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD 96 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~ 96 (372)
|.+..+|+||.+++++.+|.++|+||.+..++..+ +...-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999988864 77777787754
No 84
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0058 Score=45.10 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=43.9
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-C-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-G-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+.+.+..+|+||.|++|++.|+++|++|......... + ...-.|.++.. +..+.+.+.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHH
Confidence 4678899999999999999999999999988776652 2 33445555421 244566665554
No 85
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.01 E-value=0.0025 Score=45.17 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=38.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEE
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVG 307 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~ 307 (372)
+++...|+||.|.+|++.|.++|+||.++.+...+ +.+.-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46789999999999999999999999999987765 6666666664
No 86
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.01 E-value=0.0051 Score=44.98 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=44.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+.+.+.|+||+|.+|+++|+++|++|......+. ++.....++..+. + + ++++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence 47889999999999999999999999999998775 3333333333222 1 2 466777777664
No 87
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0036 Score=46.04 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=37.9
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
+.+.|..+|+||.|++|+..|+++|+||.+.-+...++. -+|.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 467889999999999999999999999999988776553 555653
No 88
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0089 Score=43.78 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=41.1
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-----g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
+.|..+|+||+|++++.+|+++|+||.+...... .+...-.|.+.-. +.+.++.+.+.|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHH
Confidence 3578899999999999999999999998776543 2444444444321 2234556665554
No 89
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.89 E-value=0.0073 Score=43.94 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=37.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEE
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYV 306 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v 306 (372)
+.+.+.|+||+|.+|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 445555555
No 90
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.89 E-value=0.0054 Score=46.23 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.8
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 84 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~ 84 (372)
.+.|.+.||+|+|++|+.+++..|.||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 57899999999999999999999999999999775
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.005 Score=45.31 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=37.3
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEE
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQV 94 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V 94 (372)
..+.|..+|+||.|++++.+|.++|+||.+..++..++. .++.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 468899999999999999999999999999998876554 44444
No 92
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.0086 Score=44.62 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=44.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+.|.+.+.|+||+|.+|++.|+++|++|..+...+..+ ......+++. ..+.++++++.+.|..
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence 35789999999999999999999999999998765432 2222223322 2244566666666664
No 93
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.0022 Score=48.12 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=41.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeE--EEEEcCCCCCCC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNT--FYVGGASGYPVD 315 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~--F~v~~~~g~~~~ 315 (372)
.+|++|..||-++||||-+|+.+|+.|.+|+|.-. +++...+ |.+.+. ++.++
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~ 58 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKL 58 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-Ccccc
Confidence 58999999999999999999999999999999744 5555444 444443 43454
No 94
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0079 Score=56.13 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=47.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
...++++.|+|+||+.+.|++.|+++|+||.++.-++.. +++.-.-... .++.+. ..+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~-~~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE-GEGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe-cCCCcc----cHHHHHHHHHH
Confidence 457999999999999999999999999999999999643 4443222222 233332 23566666655
No 95
>PRK07431 aspartate kinase; Provisional
Probab=96.73 E-value=0.45 Score=50.29 Aligned_cols=195 Identities=12% Similarity=0.194 Sum_probs=114.1
Q ss_pred CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375 46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 122 (372)
Q Consensus 46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 122 (372)
.+...|.|++. +.+|+++++..+|.+.|++|.... + . ..--.|.|.. +..++.-+.|++.+..
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~Is~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVKVSCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence 46778888886 789999999999999999997544 2 2 2233444533 1224444556666643
Q ss_pred CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEE-ecCCccHHHHHHH
Q 017375 123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDRPKLVFDTVC 201 (372)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~-~~DrpGLL~~i~~ 201 (372)
+..- ..+. +-+. ..+ ...-+.|.. ..+...|++. .++.+|+++++.+
T Consensus 412 ~~~~----~~~~------~~~~--------~~~----------~~~v~gIa~----~~~~~~i~l~~~~~~~g~~a~if~ 459 (587)
T PRK07431 412 EDSQ----IEIN------PTAS--------GQD----------EPEVRGVAL----DRNQAQLAIRNVPDRPGMAASIFG 459 (587)
T ss_pred CCcc----cccC------cccc--------CCC----------CCcEEEEEc----cCCEEEEEECCCCCCccHHHHHHH
Confidence 3211 1110 0000 000 001122222 2345556554 6788999999999
Q ss_pred HHHhCCceEEEEEEEe-eC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c---CCCceEEEEEeC---CCc
Q 017375 202 TLTDMQYVVFHANIDA-EG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R---VSEGLKLELCTT---DRV 271 (372)
Q Consensus 202 ~L~~~glnI~~A~I~T-~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r---~~~~t~lev~~~---Drp 271 (372)
.|+++|++|..-.... .+ +..--.|.+... +...+..+.+.|...+.. . ...-..|.+.|. .+|
T Consensus 460 ~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~------~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~ 533 (587)
T PRK07431 460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKE------DREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTP 533 (587)
T ss_pred HHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH------HHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCc
Confidence 9999999998764421 11 233334555321 111223333333322211 1 123577888886 789
Q ss_pred chHHHHHHHHHhCCceEEEEE
Q 017375 272 GLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 272 GlL~~It~~L~~~gi~I~~a~ 292 (372)
|++.++.++|++.||+|....
T Consensus 534 gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 534 GVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CHHHHHHHHHHHCCCcEEEee
Confidence 999999999999999997666
No 96
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.69 E-value=0.014 Score=43.69 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=44.6
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHH-HHHHHHHHHH
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPE-RLSVIKELLC 117 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~-~~~~l~~~L~ 117 (372)
.+.|.+.|+||++++|+.+++++|.||......+. ++.+.-.|.+.-. +.+ .+++|-+.|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence 57899999999999999999999999998876553 4555556666431 223 4555555554
No 97
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0039 Score=58.09 Aligned_cols=94 Identities=15% Similarity=0.267 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC---CCCCCCHHHHHHHHHHHHHhhhcccC
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA---SGYPVDAKIIDSIRQSIGQTILKVKG 335 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~---~g~~~~~~~~~~l~~~l~~~~~~~~~ 335 (372)
..++|.++|+|+||+++.|+..|+++|.||..+.=. .+.....|+.+-. .+.+. ..+.|++.+.... +-=+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~---~~~~l~~~f~~~a-~~f~ 79 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPL---DREALRAAFAPLA-EEFG 79 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcc---cHHHHHHHHHHHH-HhhC
Confidence 458999999999999999999999999999998765 5566778888643 34343 3456666665521 1001
Q ss_pred CCCCCCCCC-------CCCCCccccccccc
Q 017375 336 NPEDLKSAS-------QDSPTRFLFGGLFK 358 (372)
Q Consensus 336 ~~~~~~~~~-------~~~~~~~~~~~~~~ 358 (372)
.-|....+. ....-.-||++|+|
T Consensus 80 m~~~~~~~~~~~ri~i~VSK~~HCL~DLL~ 109 (287)
T COG0788 80 MDWRLHDAAQRKRIAILVSKEDHCLGDLLY 109 (287)
T ss_pred ceeEEeccccCceEEEEEechHHHHHHHHH
Confidence 111111111 13444668999997
No 98
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.0089 Score=43.20 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
++.+..+|+||-|++++..|+++|+||.+.......
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988765444
No 99
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.0075 Score=45.20 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=44.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHH-HHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAK-IIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~-~~~~l~~~l~~ 328 (372)
.+.+.+.||||+|++|++.|+++|++|......+.. +.+.=.|-+.-. . .+ +++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~---~--~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS---T--MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC---c--hHHHHHHHHHHHhc
Confidence 578999999999999999999999999999875543 444445555321 1 12 56666666654
No 100
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.017 Score=42.54 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=36.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-C-eEEEEEEEe
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-P-EAYQEYFIR 229 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~-~~~d~F~V~ 229 (372)
..+.+..+|+||.|+++++.|+++|+||......... + ...-.+.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 3678899999999999999999999999988776652 2 333345553
No 101
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.61 E-value=0.016 Score=44.27 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=44.4
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEE-EEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAA-LMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d-~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
..+.+...|+||.|++++++|+..|.||.+-.+.-. +....- ++.+. | ++..++.|..+|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhC
Confidence 468999999999999999999999999998877643 333333 33332 2 23455677777664
No 102
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.61 E-value=0.014 Score=50.91 Aligned_cols=66 Identities=17% Similarity=0.355 Sum_probs=49.2
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
..+.+...|+||.|++|+..|+++|+||.+..+...++...-.+.++- +| ++..+++|..+|.+.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCc
Confidence 468999999999999999999999999999988766533333333321 23 3557888888888644
No 103
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.60 E-value=0.015 Score=44.34 Aligned_cols=64 Identities=8% Similarity=0.163 Sum_probs=45.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
..+.+...|+||+|.+|+..|+..|.||.+..+.-..+...-.+-++- .| ++..+++|..+|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~~---~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-VC---TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhC
Confidence 468899999999999999999999999999998733333322232321 12 23466777777765
No 104
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.60 E-value=0.012 Score=43.67 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=34.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYV 306 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v 306 (372)
+-+...|+||.+++|++.|+++|++|.+...... ++.+.=+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4568999999999999999999999999887543 3445444444
No 105
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.59 E-value=0.016 Score=42.16 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=30.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
+.+.+.|+||.|.+|++.|+++|++|.++....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999998765
No 106
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.57 E-value=0.017 Score=45.86 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=46.0
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
.+...|.+...|+||.|++|+++|+..|.||.+-.+.-.+..-.--+.+.- . + + +.++.|..+|.+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~-~----~-~~i~Qi~kQL~KL 72 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N-D----D-QRLEQMISQIEKL 72 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c-C----c-hHHHHHHHHHhCC
Confidence 345669999999999999999999999999998877654322222222221 1 1 2 4566777777653
No 107
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.57 E-value=0.014 Score=45.16 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=46.0
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCC-ceE-EEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAA-ALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~-~~~-d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
..+.+...|+||.|++++++|+..|+||.+-.+..... .+. -++.+.. | ++..++.|..+|.+.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCC
Confidence 36889999999999999999999999999988876433 332 3343321 2 344556777776653
No 108
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.021 Score=42.43 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.5
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 84 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~ 84 (372)
-+.|.+.|+||++++++.+|+.+|+||.+....+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 36788999999999999999999999998887654
No 109
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.51 E-value=0.02 Score=49.87 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=47.0
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
..+.|...|+||.|++|+++|+.+|+||.+-.+...+ +...-+|.|.. ++...+.|..+|.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcC
Confidence 3688999999999999999999999999998887653 33344555532 234566777777653
No 110
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.41 E-value=0.029 Score=40.83 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=36.3
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-C-CceEEEEEEe
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVT 95 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~-~~~~d~F~V~ 95 (372)
.+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 46788999999999999999999999999988774 3 3333344443
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.40 E-value=0.026 Score=49.38 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=46.9
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
..+.|...|+||.|++|+++|+.+|+||.+-.+...+ +...-++.|.. ++..++.+..+|.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KL 67 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999988776643 33344555532 334567777777653
No 112
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.39 E-value=0.011 Score=42.91 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=38.4
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEe
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVT 95 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~ 95 (372)
+.|.+.|++|++++++.+|+++|+||.+..+.... +...-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 67899999999999999999999999999988753 5656667663
No 113
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.39 E-value=0.032 Score=41.99 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=45.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+-+..+|+||-|++|...|+++|+||.+....-. +....=.|||. ..|.. .+...+.+-+.|..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence 3455689999999999999999999999976654 44566788884 44532 22344555555544
No 114
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.39 E-value=0.018 Score=44.62 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=45.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
.+.+...|+||.|+++++.|+..|+||.+-.+.... +..--++.+. .| ++...+++...|...+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC----CHHHHHHHHHHHhCCc
Confidence 688999999999999999999999999998887654 3333333332 12 3346677777766443
No 115
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.38 E-value=0.027 Score=49.97 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=46.7
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
..+.|.+.|+||++++++++|+..|+||.+-.+... .|..--++.|. + ++...+.|+++|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~----~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----G----DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----C----CHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999888763 33333344342 2 1223577777777643
No 116
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.34 E-value=0.023 Score=45.22 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
....|.+-..|+||+|.+|+..|+..|.||.++.+.-.+....-.+.+.-. + ++.++++..+|.+.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence 357899999999999999999999999999999987555444444444322 2 347788888887644
No 117
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.032 Score=40.74 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
.+.+.+.|+||.|++|++.|++++++|......+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 57889999999999999999999999998887665
No 118
>PRK08577 hypothetical protein; Provisional
Probab=96.29 E-value=0.018 Score=48.84 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=46.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+.|.+.+.|+||+|++|+++|++++++|.+....+.. +.+.-.|.+. ..+. ..++..+.+.|..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve-v~~~---~~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD-LSKS---DIDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE-eCCc---hhhHHHHHHHHHc
Confidence 68999999999999999999999999999999887754 3233333332 1111 1245666666654
No 119
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.27 E-value=0.006 Score=44.81 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=34.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 306 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v 306 (372)
+-+.+.|+||+|.+|+..|++.|+||......+.++.+.=.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555444444444
No 120
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.26 E-value=0.029 Score=42.42 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=39.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG 311 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g 311 (372)
.|-+...|+||-|++|-..|+.+|||+.+.+-..... .-+=.||| |..|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 4556668999999999999999999999999876644 45567888 5556
No 121
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.035 Score=40.31 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=34.9
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI 228 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V 228 (372)
+.+.++|+||.+.+++..|+++|++|.+...... ++.+.-.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 5778999999999999999999999998887662 3444433444
No 122
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.22 E-value=0.032 Score=48.85 Aligned_cols=64 Identities=20% Similarity=0.383 Sum_probs=47.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~--~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
..+.|...|+||.|++|+..|+++|+||.+..+....+. ..=+|.+. | ++..++++..+|.+.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhccc
Confidence 468999999999999999999999999999987654433 33334332 2 3456788888877644
No 123
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.21 E-value=0.032 Score=37.51 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=31.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
|.+.+.|+||++++|+.+|+++|++|..+......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987654
No 124
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.20 E-value=0.015 Score=44.34 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=45.8
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+.+.+...++||+|.+|+..|+..|.||.+..+.-. ++...=++-+ . ++..+++|..+|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc
Confidence 578999999999999999999999999999998753 3334444444 2 23356677776665
No 125
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.19 E-value=0.0064 Score=44.68 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=36.6
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 229 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~ 229 (372)
+.+.+.|+||+|++++.+|+++|+||......+.++.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 567899999999999999999999998876665556666555553
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.14 E-value=0.032 Score=41.57 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998875544
No 127
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.03 Score=40.90 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=36.8
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEe
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT 95 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~ 95 (372)
++.+.++|+||.|++++..|+++++||.+....+. ++...-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887765 34444344443
No 128
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.048 Score=40.31 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=31.1
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
+.+.+..+|+||.|.+|++.|+++|++|.++...
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 5788999999999999999999999999988654
No 129
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.03 E-value=0.062 Score=37.99 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=42.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
|.+.+.|+||.+.+|+..|.+++++|....+...+ +...-.|.+... +..+++.+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 46789999999999999999999999999988765 222223333211 23355666666553
No 130
>PRK04435 hypothetical protein; Provisional
Probab=96.03 E-value=0.064 Score=46.27 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.9
Q ss_pred ccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEec
Q 017375 42 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 96 (372)
Q Consensus 42 ~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~ 96 (372)
....+....+.+...|+||+|++|+.+++.+|+||..-..... +|.+.-.|.|..
T Consensus 63 ~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 63 EMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred ccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 3456778899999999999999999999999999998877654 565556676653
No 131
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.97 E-value=0.054 Score=42.71 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=48.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+.|-+...|+||-|+++-..|+++|||+.+.+-.-.... -+=.||| |..|. .+ +.++.+-+.|..
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~-~~~~~~l~~L~~ 80 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SA-PALDPIIKSLRN 80 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CC-HHHHHHHHHHHH
Confidence 3677777899999999999999999999999998766444 4557888 55675 23 344444444444
No 132
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.91 E-value=0.089 Score=40.10 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=44.1
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
+.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|.- ++. ... ...+.+...|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~-~~~-~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH-IED-PNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC-CCC-HHHHHHHHHHHH
Confidence 3566778999999999999999999999988766543 33444566743 343 223 244444444443
No 133
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.019 Score=41.43 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.7
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEE
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQV 94 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V 94 (372)
+.|..+|+||-|++++.+|+++|+||.+...+... +...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67889999999999999999999999988776543 443334444
No 134
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.91 E-value=0.037 Score=40.87 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=37.1
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEe
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVT 95 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~ 95 (372)
+.+..+|+||.+++++..|+++|+||.+..... .++...-+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 467899999999999999999999999887765 355666667664
No 135
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.88 E-value=0.06 Score=41.07 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=46.2
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA 252 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~ 252 (372)
..+.+...|+||.|++++++|...|+||.+-.+... ++..--++.+. + + ...+.|.+.|...
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-----~-~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-----E-RPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-----C-chHHHHHHHHhcC
Confidence 478999999999999999999999999999988763 34444445442 2 1 3566777766543
No 136
>PRK08577 hypothetical protein; Provisional
Probab=95.88 E-value=0.08 Score=44.92 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=51.6
Q ss_pred HHHHHHHhhCCCC--ccc----CC-Cc-eecc--cCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CC
Q 017375 19 ILDYIRKCLGPEA--CFA----SS-MR-SVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NT 86 (372)
Q Consensus 19 ~~~~i~~~l~~~~--~~~----~~-~~-~~~~--~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~ 86 (372)
+...|++.|.=.. ... .. .+ .+.+ ......+.+.|.+.|+||+|++|+.+|+++|+||.+....+. ++
T Consensus 17 ip~~~r~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~ 96 (136)
T PRK08577 17 IPLEIREALGIREGMYVLLIADTDKKEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGE 96 (136)
T ss_pred ecHHHHHHcCcCCCCEEEEEEECCCCEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCC
Confidence 5567888777222 111 11 12 3333 234568899999999999999999999999999998887774 33
Q ss_pred ceEEEEEE
Q 017375 87 RAAALMQV 94 (372)
Q Consensus 87 ~~~d~F~V 94 (372)
.+...|.+
T Consensus 97 ~~~i~l~v 104 (136)
T PRK08577 97 LAECVIIV 104 (136)
T ss_pred EEEEEEEE
Confidence 33344444
No 137
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.80 E-value=0.085 Score=37.24 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=35.8
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEe
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVT 95 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~ 95 (372)
+.|.++|+||.++.++..|.+++++|.+..+...+ +...-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 46789999999999999999999999999887755 4333444444
No 138
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.064 Score=39.95 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.3
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH 84 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~ 84 (372)
+.+..+|+||-|++++..|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998865553
No 139
>PRK07431 aspartate kinase; Provisional
Probab=95.70 E-value=1.9 Score=45.60 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=104.5
Q ss_pred ecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcccccc
Q 017375 55 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEV 133 (372)
Q Consensus 55 ~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l 133 (372)
..+.+|++++|...|.++|+||.--..... .+...-.|.|... ...+..+.|.+ +..+..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~~~~-------- 338 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAPALG-------- 338 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHHHcC--------
Confidence 468899999999999999999986543332 3333446777431 11222222322 111110
Q ss_pred cccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHHHHHHhCCceE
Q 017375 134 SQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTVCTLTDMQYVV 210 (372)
Q Consensus 134 ~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI 210 (372)
...+.+. .+...|.|.+. +.||+++++..+|++.|++|
T Consensus 339 -----------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i 379 (587)
T PRK07431 339 -----------------------------------GAEVLVE----TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINI 379 (587)
T ss_pred -----------------------------------CCcEEEe----CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcE
Confidence 0112222 24567888875 79999999999999999999
Q ss_pred EEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----c--------CC-----------CceEEEEE-
Q 017375 211 FHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----R--------VS-----------EGLKLELC- 266 (372)
Q Consensus 211 ~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----r--------~~-----------~~t~lev~- 266 (372)
.... +.. ..-.|.|.. ...++..+.|...+.. . .+ ....|+|.
T Consensus 380 ~~i~--sSe--~~Is~vv~~---------~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~ 446 (587)
T PRK07431 380 RMIS--TSE--VKVSCVIDA---------EDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIRN 446 (587)
T ss_pred EEEE--cCC--CEEEEEEcH---------HHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccCCEEEEEECC
Confidence 7644 222 222354532 2345555666666521 0 00 12345544
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 267 TTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
..+.||++++|...|+++|++|......
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 4688999999999999999999998543
No 140
>PRK04435 hypothetical protein; Provisional
Probab=95.48 E-value=0.14 Score=44.21 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=44.6
Q ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEe
Q 017375 174 VVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIR 229 (372)
Q Consensus 174 i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~ 229 (372)
+..........+.+...|+||+|++|+++|+++|+||........ ++.+.-.|.+.
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVe 117 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISID 117 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEE
Confidence 333456677899999999999999999999999999998876554 36666566664
No 141
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.36 E-value=0.72 Score=46.23 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=67.5
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375 181 DYSVVTIT---SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R 256 (372)
Q Consensus 181 ~~t~v~V~---~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r 256 (372)
+...|+|. ..++||+++++..+|.++|++|......... ..-.|.|.. +..+++.+.|.+.+.. .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAAG 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence 46678887 5788999999999999999999754332111 222355531 1234444445444311 1
Q ss_pred ------CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 017375 257 ------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRA 291 (372)
Q Consensus 257 ------~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a 291 (372)
......|.|.+. ++||+++++.++|++.|+||...
T Consensus 328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 123466777775 78999999999999999999853
No 142
>PRK07334 threonine dehydratase; Provisional
Probab=95.19 E-value=0.12 Score=52.08 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=48.0
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-----CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-----~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
.+.|.|.+.||||+|++|+.++++.++||.+....+. ++.+.-.|.|.- .+.++++.|...|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999998764 344444444432 234566666666654
No 143
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.15 E-value=0.088 Score=35.22 Aligned_cols=35 Identities=40% Similarity=0.627 Sum_probs=31.6
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN 85 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~ 85 (372)
|.+.++|++|++++++.+|..+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987753
No 144
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.02 E-value=0.098 Score=47.79 Aligned_cols=60 Identities=22% Similarity=0.306 Sum_probs=45.6
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHH
Q 017375 258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDS 321 (372)
Q Consensus 258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~ 321 (372)
+++..|-+.-.||||.+..|+..|.++||||..+++.-.. +.|.=+.-+ ..+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence 4678888899999999999999999999999999998654 444333333 34666655544
No 145
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.87 E-value=0.13 Score=37.92 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=37.0
Q ss_pred EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEe
Q 017375 49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVT 95 (372)
Q Consensus 49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~ 95 (372)
+.+.+..+|+||.|++++.+|+++|+||.+....-. ++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 578899999999999999999999999997765432 34444555554
No 146
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.82 E-value=0.11 Score=37.96 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=36.8
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 269 DRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi~I~~a~i~T~g~--~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
|+||+|.+|+..|...|+||.++.+..... ...=++.+. |. +..++.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~---~~---~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS---GD---DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE---S----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe---eC---chhHHHHHHHHhc
Confidence 789999999999999999999999987433 333344332 21 1245667776665
No 147
>PRK07334 threonine dehydratase; Provisional
Probab=94.82 E-value=0.18 Score=50.78 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=48.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-----g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.+.|.|.+.||||+|.+|+.+|++.++||.+....+. ++.+.-.|.|.- .+.+.++.+.+.|..
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999998765 355544454431 122466777777664
No 148
>PRK06635 aspartate kinase; Reviewed
Probab=94.80 E-value=0.39 Score=48.16 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH---Hhc
Q 017375 181 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER 255 (372)
Q Consensus 181 ~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~---L~~ 255 (372)
+...|+|. ..++||.++++..+|+++|+||......... +...-.|.|.. +..+...+.|.+. +.-
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 34445544 5678999999999999999999965443222 23444565632 1233334444432 110
Q ss_pred c----CCCceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375 256 R----VSEGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 256 r----~~~~t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
+ ......+.|.+ .++||++++|.++|++.|++|....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 1 12346788876 5899999999999999999998863
No 149
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.80 E-value=0.16 Score=38.50 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYP 313 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~ 313 (372)
.|-+..+|+||-|+++-..|+.+|+|+.+.+...... ..+=.||| |..|..
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 3455668999999999999999999999999876644 45568888 555644
No 150
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.68 E-value=0.13 Score=37.60 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=37.6
Q ss_pred CccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375 57 DRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNV 119 (372)
Q Consensus 57 DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~ 119 (372)
|+||.|.+|+++|...|+||.+-.+... ++..--++.|.. +. ...+.|..+|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhcc
Confidence 7899999999999999999999999883 334334454442 11 2345676676653
No 151
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.47 E-value=0.25 Score=53.31 Aligned_cols=73 Identities=21% Similarity=0.135 Sum_probs=51.9
Q ss_pred EEEEecCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHH
Q 017375 172 VNVVNCYD-KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQC 248 (372)
Q Consensus 172 V~i~~~~~-~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~ 248 (372)
|.|+.... .-...|.|.+.||+|||++|+.++++.++||....+.+. ++.+.-.|.|.- .+-..+..+...
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~ 728 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK 728 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence 44543212 234588999999999999999999999999999999875 366655565532 232466666666
Q ss_pred HH
Q 017375 249 LK 250 (372)
Q Consensus 249 L~ 250 (372)
|.
T Consensus 729 L~ 730 (743)
T PRK10872 729 LN 730 (743)
T ss_pred Hh
Confidence 55
No 152
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.34 E-value=0.46 Score=37.43 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=47.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
.+.+.+.+..+|+||-|+++-..|+.+|+|+.+-.-.-.. ..-.-.|||. .+|. .+ ..++.+.+.|...|
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SA-PALDPIIKSLRNDI 82 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CC-HHHHHHHHHHHHHh
Confidence 3456777777999999999999999999999876655433 2233457774 4564 23 25555555555544
No 153
>PRK11899 prephenate dehydratase; Provisional
Probab=94.16 E-value=0.23 Score=47.42 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDA 316 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~ 316 (372)
.|.|-+..+|+||.|+++-..|+++|||+.+.+-.-.+. .-+=.||| |..|..-++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~ 250 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDR 250 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCH
Confidence 477777778999999999999999999999999886644 45668888 667755444
No 154
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.09 E-value=0.45 Score=35.58 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=41.2
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
+.+..+|+||-|+++..+|+++|+||.+-.-.... ....-.|+|. .+|.. .+ ...+.+.+.|..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~-~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DD-PDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CC-HHHHHHHHHHHH
Confidence 34556899999999999999999999987554432 2333446664 34432 12 245555555543
No 155
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.08 E-value=0.049 Score=42.28 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=42.3
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEee-----cC----CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTD-RVGLLSNVTRIFRENSLTVTRAEVAT-----KS----GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~D-rpGlL~~It~~L~~~gi~I~~a~i~T-----~g----~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+++|-|.| ++|++++||++|+++|+||...+--+ .+ ....-.|.|+ |.+.+ .+.||.+|..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~~---~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPAD---LEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCCC---HHHHHHHHHH
Confidence 37889999 99999999999999999997765431 12 2344467774 43433 3566666654
No 156
>PRK06635 aspartate kinase; Reviewed
Probab=94.03 E-value=3.2 Score=41.65 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=65.1
Q ss_pred EEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 017375 50 AIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG 127 (372)
Q Consensus 50 ~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 127 (372)
.|+|. ..++||.++++..+|.+.|+||.--..+... +...-.|.|.. +..++..+.|.+ +......
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~~- 331 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIGA- 331 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcCc-
Confidence 34443 4568999999999999999999954322222 23445565543 112233333333 1111100
Q ss_pred cccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHHHHHH
Q 017375 128 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTVCTLT 204 (372)
Q Consensus 128 ~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~~~L~ 204 (372)
..|.+ ..+...+.|.+ ++.||.++++.++|+
T Consensus 332 ------------------------------------------~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~La 365 (404)
T PRK06635 332 ------------------------------------------ESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEALA 365 (404)
T ss_pred ------------------------------------------ceEEE----cCCeEEEEEECCCCCCCchHHHHHHHHHH
Confidence 11222 12456777765 689999999999999
Q ss_pred hCCceEEEE
Q 017375 205 DMQYVVFHA 213 (372)
Q Consensus 205 ~~glnI~~A 213 (372)
+.|+||...
T Consensus 366 ~~~Ini~~i 374 (404)
T PRK06635 366 EEGINIQMI 374 (404)
T ss_pred HCCCCEEEE
Confidence 999999874
No 157
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.89 E-value=0.38 Score=35.41 Aligned_cols=61 Identities=10% Similarity=0.200 Sum_probs=42.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+.|.-+||||-|.++++.++. |.||...+=.-.+.....++..-... +.++++++.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 357789999999999999999 99999887654443334444443222 23577777777765
No 158
>PRK06291 aspartate kinase; Provisional
Probab=93.84 E-value=1.6 Score=44.72 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=74.9
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375 180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 255 (372)
Q Consensus 180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~- 255 (372)
.+...|+|.+. +.+|+++++..+|+++|++|......+.. .--.|.|.. +..+...+.|...+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 35667888764 68999999999999999999875443322 222355532 1223334444444432
Q ss_pred ---c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375 256 ---R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 306 (372)
Q Consensus 256 ---r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v 306 (372)
. ...-..|.|.|. +++|++.++..+|++.|++|.... +|...... |.|
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV 445 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVV 445 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEE
Confidence 1 123577888876 789999999999999999998665 44444444 444
No 159
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.78 E-value=0.29 Score=52.77 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=47.9
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
...|.|.+.||+|||++|+.+++..++||.+..+.+. ++.+...|.|.- .+.+.+.+|-..|+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 3588899999999999999999999999999998874 455555565542 23455666655554
No 160
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.66 E-value=0.4 Score=39.57 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=42.9
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCCC
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA-VNTFYVGGASGYP 313 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~-~d~F~v~~~~g~~ 313 (372)
.|.|-+..+|+||-|++|-..|+.+|||+.+.+.......- +=.||| |..|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 47777788999999999999999999999999988775553 457777 555643
No 161
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.38 E-value=0.56 Score=50.54 Aligned_cols=73 Identities=3% Similarity=-0.007 Sum_probs=51.3
Q ss_pred EEEEecCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375 172 VNVVNCYD-KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL 249 (372)
Q Consensus 172 V~i~~~~~-~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L 249 (372)
|.|+.... .-.+.|.|.+.||+|+|.+|+.+++..++||.+..+.+.+ +.+.-.|.|.- .+-..+..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 45543322 2345889999999999999999999999999999987765 45554555532 1224566666665
Q ss_pred H
Q 017375 250 K 250 (372)
Q Consensus 250 ~ 250 (372)
.
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 4
No 162
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.21 E-value=0.62 Score=34.26 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=38.8
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
+.|.-+||||-|.+++.+++. |.||..-+-.-.+-....++..-. ..+++..+.|.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 357889999999999999999 999997654433222223332222 1133455666666654
No 163
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.20 E-value=0.22 Score=37.55 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=46.7
Q ss_pred EEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEE--EEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAAL--MQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~--F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
|+++++-||-.|++++-+|..+|.-|.+|.|.-+ +++---+ |.+.+ .+..++.......+..++.+.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999763 4443333 34444 2333443333355666655544
No 164
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.13 E-value=0.68 Score=49.82 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=50.9
Q ss_pred EEEEec-CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375 172 VNVVNC-YDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL 249 (372)
Q Consensus 172 V~i~~~-~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L 249 (372)
|.|... ...-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.|.- .+-..+..+...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 445433 122345889999999999999999999999999999998764 55544454431 2224566666665
Q ss_pred H
Q 017375 250 K 250 (372)
Q Consensus 250 ~ 250 (372)
.
T Consensus 673 ~ 673 (683)
T TIGR00691 673 K 673 (683)
T ss_pred h
Confidence 4
No 165
>PRK08210 aspartate kinase I; Reviewed
Probab=93.11 E-value=1.8 Score=43.41 Aligned_cols=96 Identities=11% Similarity=0.213 Sum_probs=65.2
Q ss_pred CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc---
Q 017375 181 DYSVVTITSKDR-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--- 256 (372)
Q Consensus 181 ~~t~v~V~~~Dr-pGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--- 256 (372)
+...|+|...+. ||.+++|..+|+++|+||....... . .-.|.+.. +..+++.+.|.+ +...
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~---------~~~~~a~~~l~~-~~~~v~~ 335 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD---------EDSEKAKEILEN-LGLKPSV 335 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH---------HHHHHHHHHHHH-hCCcEEE
Confidence 456777776665 9999999999999999999864432 2 12355532 123333333333 1111
Q ss_pred CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 017375 257 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR 290 (372)
Q Consensus 257 ~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~ 290 (372)
...-..|.|.+. ++||++.++.++|++.|++|..
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 123567777775 7899999999999999999974
No 166
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.92 E-value=0.47 Score=51.08 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
...|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.= .+.+.+.+|-..|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 45888999999999999999999999999999987754 44444555532 23355666655554
No 167
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.79 E-value=0.47 Score=45.19 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=46.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDA 316 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~ 316 (372)
..|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+.. .+=.||| |..|..-++
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~ 250 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDP 250 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcH
Confidence 46888888889999999999999999999999998866544 5557777 677766553
No 168
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.76 E-value=0.56 Score=46.98 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDA 316 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~ 316 (372)
.|.|-+..+|+||.|+++-..|+.+|||+.+.+-.-. +..-+=.||| |..|..-++
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~ 353 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA 353 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence 4667777889999999999999999999999998844 5556678888 666755444
No 169
>PRK09034 aspartate kinase; Reviewed
Probab=92.75 E-value=6.2 Score=40.40 Aligned_cols=107 Identities=10% Similarity=0.171 Sum_probs=69.6
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375 181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R 256 (372)
Q Consensus 181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r 256 (372)
+.+.|++.+ .+++|+++++..+|+++|++|... + .+...-.|.|.+.+ +.. ..+..+.+.|...+.. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence 456777774 678999999999999999999875 2 22233346665321 111 0113333333332211 0
Q ss_pred ---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 257 ---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 257 ---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
...-..|.+.|. ++||+++++..+|++.||+|....-.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 123577888654 789999999999999999999886433
No 170
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=92.72 E-value=12 Score=37.49 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=66.0
Q ss_pred CeEEEEEE---ecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 47 DHTAIELT---GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 47 ~~t~i~v~---~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
+...|.|. ..+++|.++++..+|.++|++|..-... ..+ ..-.|.|.. +..+++.+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDE----------TDADEAVRALKDQSGA- 325 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence 45567777 5678999999999999999999733211 111 223455532 1122333334332211
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTV 200 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~ 200 (372)
... ..+.+ ..+...|.|.+. ++||+++++.
T Consensus 326 ~~~-------------------------------------------~~i~~----~~~~a~IsvVG~~~~~~~g~~a~i~ 358 (401)
T TIGR00656 326 AGL-------------------------------------------DRVEV----EEGLAKVSIVGAGMVGAPGVASEIF 358 (401)
T ss_pred cCC-------------------------------------------ceEEE----eCCeEEEEEECCCcccCccHHHHHH
Confidence 000 11222 235677778774 7999999999
Q ss_pred HHHHhCCceEEE
Q 017375 201 CTLTDMQYVVFH 212 (372)
Q Consensus 201 ~~L~~~glnI~~ 212 (372)
.+|++.|+||..
T Consensus 359 ~~L~~~gIni~~ 370 (401)
T TIGR00656 359 SALEEKNINILM 370 (401)
T ss_pred HHHHHCCCcEEE
Confidence 999999999984
No 171
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.44 E-value=7.4 Score=42.93 Aligned_cols=102 Identities=4% Similarity=0.093 Sum_probs=70.1
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH---
Q 017375 180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI--- 253 (372)
Q Consensus 180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L--- 253 (372)
.+.+.|+|.+. .+||+++++..+|+++|++|......+.. ..-.|.|... ..+...+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~---------d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQS---------DAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence 45678888765 68999999999999999999765444322 2224656431 2233333333332
Q ss_pred -hc-c------CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375 254 -ER-R------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 254 -~~-r------~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
.. . ......|.|.|. ++||++.++..+|++.|++|....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 21 1 123577888876 789999999999999999998775
No 172
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.30 E-value=0.73 Score=42.05 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI 228 (372)
Q Consensus 179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V 228 (372)
......+.+.-.|+||.+..++.+|.++|+||...++... ++.++-+..+
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3445577788899999999999999999999999999875 4777766555
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.21 E-value=0.31 Score=49.16 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIR 323 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~ 323 (372)
...|-+.-.|+||.+..|+.+|+++|+||...+....|+.+.-+|-+ ++ +++++.+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence 47888899999999999999999999999999998888666555544 34 55554555555
No 174
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.03 E-value=0.59 Score=34.26 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCeEEEEEEec----CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375 180 KDYSVVTITSK----DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 229 (372)
Q Consensus 180 ~~~t~v~V~~~----DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~ 229 (372)
.+...|+|.++ |.||+++++++.|++.|++|.... | ...+.+.|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence 35678888888 799999999999999999998765 3 334455564
No 175
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.99 E-value=0.72 Score=49.64 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=46.7
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+.|.|.+.||+|+|++|+.+++.+++||.+..+.+.. +.+.-.|.|. +.+.+.+.+|-..|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-------V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-------IKNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-------ECCHHHHHHHHHHHh
Confidence 45888999999999999999999999999999998863 4444445443 223355566655554
No 176
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.81 E-value=0.1 Score=40.49 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=41.6
Q ss_pred EEEEEecC-CccHHHHHHHHHHhCCceEEEEEEEee-----C----CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 184 VVTITSKD-RPKLVFDTVCTLTDMQYVVFHANIDAE-----G----PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 184 ~v~V~~~D-rpGLL~~i~~~L~~~glnI~~A~I~T~-----g----~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
+|+|.++| ++|++++++++|+++|+||.+-+-.+. + +...-.|.|..+ +. + .+.++..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~---~~-~---~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ---PA-D---LEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC---CC-C---HHHHHHHHHH
Confidence 47899999 999999999999999999965443221 1 344556777532 22 2 2556665553
No 177
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.78 E-value=0.68 Score=40.43 Aligned_cols=46 Identities=15% Similarity=0.451 Sum_probs=37.7
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CC-ceEEEEEEe
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NT-RAAALMQVT 95 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~-~~~d~F~V~ 95 (372)
-+.+.+-++||.|.++++.++++|.||.-|+.+.. +| .+.-.|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 46788999999999999999999999999999984 44 444455554
No 178
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.74 E-value=0.63 Score=46.02 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=42.1
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
..+.|.|.-+||||.|++|+..|.+.||||.+.+|.-..+...-++.+.
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 4599999999999999999999999999999999976666666666664
No 179
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.72 E-value=4.8 Score=40.91 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=65.7
Q ss_pred CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--
Q 017375 181 DYSVVTITSKDR--PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-- 256 (372)
Q Consensus 181 ~~t~v~V~~~Dr--pGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r-- 256 (372)
+...|+|.+.+- +|.++++.++|.++|++|......+.. ..-.|.|... ..+...+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKE---------DADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence 456777776443 799999999999999999876532322 2223555421 1222222232211111
Q ss_pred -----CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375 257 -----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 257 -----~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
...-+.+.+.+. ++||++++|.++|++.|++|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 123477888654 789999999999999999998775
No 180
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.50 E-value=1.1 Score=47.85 Aligned_cols=73 Identities=23% Similarity=0.178 Sum_probs=50.8
Q ss_pred EEEEecC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375 172 VNVVNCY-DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL 249 (372)
Q Consensus 172 V~i~~~~-~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L 249 (372)
|.|+.+. ..-...|.|.+.||+|+|.+|+.+|+..+.||......+.. +.+.-.|.+.- .+-..+..+...|
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l 689 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARL 689 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHH
Confidence 4455553 34556899999999999999999999999999999998864 44443343321 1223555555555
Q ss_pred H
Q 017375 250 K 250 (372)
Q Consensus 250 ~ 250 (372)
.
T Consensus 690 ~ 690 (701)
T COG0317 690 K 690 (701)
T ss_pred h
Confidence 4
No 181
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.49 E-value=0.42 Score=47.55 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=38.4
Q ss_pred ceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017375 260 GLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG 308 (372)
Q Consensus 260 ~t~lev~~~-DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~ 308 (372)
.+.|.+.-+ |+||.|++|+..|+.+||||.+.++ .....-+-.|||.-
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 577788886 9999999999999999999999999 33333333499853
No 182
>PLN02551 aspartokinase
Probab=91.36 E-value=14 Score=38.66 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHH---HHHH
Q 017375 180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL---KAAI 253 (372)
Q Consensus 180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L---~~~L 253 (372)
.+.+.|+|.+. +.+|.++++...|+++|++|... .+.. ..-.|.+...+ .. ..+.+++.+ ...|
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~---~~---~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSK---LW---SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhH---hh---hhhhHHHHHHHHHHHh
Confidence 35678888765 68999999999999999999876 2322 22346664321 11 112222222 2223
Q ss_pred hc--c---CCCceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375 254 ER--R---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 306 (372)
Q Consensus 254 ~~--r---~~~~t~lev~~~--DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v 306 (372)
.+ + ......|.|.|. .+||++.++-++|++.||+|.... +|...... |.|
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV 491 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIV 491 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEE
Confidence 21 1 123466777754 689999999999999999998877 44444444 444
No 183
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.36 E-value=1.3 Score=33.32 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=34.2
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCC
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDG 233 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g 233 (372)
+.+..+|+||-|+++...|+.+|+|+.+-.-.... ....-.|+|. .+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd-~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD-CEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE-EEc
Confidence 44555899999999999999999999875554433 2233456664 445
No 184
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.01 E-value=1.1 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=36.7
Q ss_pred CCeEEEEEEec----CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375 46 MDHTAIELTGS----DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96 (372)
Q Consensus 46 ~~~t~i~v~~~----DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~ 96 (372)
.+...|+|.++ |.||..++++..|+++|+||.-.. | ...|.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 46778888888 799999999999999999998555 4 4567777764
No 185
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.86 E-value=0.98 Score=48.29 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=47.4
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEE-EEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAA-LMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d-~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.-...|.|.+.||+|||++|+.+|+..+.||.+....+.++.... .|.+. +.+...+.+|-..|.
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~l~ 690 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLARLK 690 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHHHh
Confidence 345789999999999999999999999999999888886555444 33333 223355556555554
No 186
>PRK09181 aspartate kinase; Validated
Probab=90.80 E-value=5.5 Score=41.06 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=70.4
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375 181 DYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R 256 (372)
Q Consensus 181 ~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r 256 (372)
+.+.|+|.+. +.+|+++++..+|.++|++|. .+.+.. ..-.|.|.+. . ..++++.+.|...+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~------~-~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS------L-KTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC------h-HHHHHHHHHHHHhcCCce
Confidence 5677788654 789999999999999999998 333332 2334666431 1 2345555555544421 1
Q ss_pred --CCCceEEEEEeCC--CcchHHHHHHHHHhCCceEEEEE
Q 017375 257 --VSEGLKLELCTTD--RVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 257 --~~~~t~lev~~~D--rpGlL~~It~~L~~~gi~I~~a~ 292 (372)
...-..|.+.|.. +||+..++.++|++.||+|....
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 2345788888765 89999999999999999998766
No 187
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=90.61 E-value=0.67 Score=40.46 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=37.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 306 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v 306 (372)
-+.+.+.++||.|.++|-.+++.|.||..++-...++-.....|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm 48 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM 48 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence 467889999999999999999999999999987765544445555
No 188
>PRK06291 aspartate kinase; Provisional
Probab=90.53 E-value=23 Score=36.40 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred CeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 47 DHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 47 ~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
+...|.|.+. +.+|+++++..+|.++|++|.--...+ . ..--.|.|.. +..++..+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s-s-e~sIsf~V~~----------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS-S-ESNISLVVDE----------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC-C-CceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence 4567777764 689999999999999999998543222 1 1223455543 11122233344333211
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTV 200 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~ 200 (372)
. . ..|.+. .+...|.|.+. +++|++.++.
T Consensus 388 ~-~-------------------------------------------~~i~~~----~~~a~IsvvG~gm~~~~gv~~rif 419 (465)
T PRK06291 388 L-V-------------------------------------------RDVTFD----KDVCVVAVVGAGMAGTPGVAGRIF 419 (465)
T ss_pred c-C-------------------------------------------cceEEe----CCEEEEEEEcCCccCCcChHHHHH
Confidence 0 0 012221 24567777775 6999999999
Q ss_pred HHHHhCCceEEEEEEEe
Q 017375 201 CTLTDMQYVVFHANIDA 217 (372)
Q Consensus 201 ~~L~~~glnI~~A~I~T 217 (372)
.+|.+.|+||..-...+
T Consensus 420 ~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 420 SALGESGINIKMISQGS 436 (465)
T ss_pred HHHHHCCCCEEEEEecc
Confidence 99999999998544333
No 189
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.88 E-value=2.2 Score=32.19 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=35.3
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS 234 (372)
Q Consensus 185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~ 234 (372)
+.+..+|+||-|+++-..|+.+|+|+.+-.-.... ....-.|||. .+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence 44555899999999999999999999876665533 2233457774 3454
No 190
>PRK06349 homoserine dehydrogenase; Provisional
Probab=89.85 E-value=1.4 Score=44.64 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+.|.+...|+||.|.+|+..|.+++++|.+..-....+.....++++.. .+...+++..++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~----~~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE----TSEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence 48899999999999999999999999999988765443345566777643 223345555555543
No 191
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.66 E-value=1.6 Score=44.07 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEe
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~ 95 (372)
.....|.+.-.|+||.+++|+.+|+++|+||..-++++.++.+.-+|-+.
T Consensus 336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D 385 (409)
T PRK11790 336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD 385 (409)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence 36678888999999999999999999999999999988888877777553
No 192
>PRK06382 threonine dehydratase; Provisional
Probab=89.64 E-value=2.1 Score=43.15 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE----e-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW----T-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~----T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
.+..+.+.|..+|+||-|++++.+|.++|+||.+-... . ..+...-+|.|... +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999877654 2 24455566766531 22333456655553
No 193
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.62 E-value=0.85 Score=47.58 Aligned_cols=62 Identities=23% Similarity=0.479 Sum_probs=45.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQ 324 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~ 324 (372)
.++.+-+.-.|+||.+..|+..|.+++|||..+++.-.. +.+.=++-+ ..+++++.+++|++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 456666677999999999999999999999999987643 333333333 34667766676664
No 194
>PRK08210 aspartate kinase I; Reviewed
Probab=89.36 E-value=22 Score=35.58 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=62.2
Q ss_pred CeEEEEEEecCc-cchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 017375 47 DHTAIELTGSDR-PGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK 125 (372)
Q Consensus 47 ~~t~i~v~~~Dr-pGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 125 (372)
+...|+|...+. ||.+++|...|.++|+||.--..+ .. .-.|.+.. +..+++...|.+ + + .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~--~is~~v~~----------~~~~~a~~~l~~-~-~-~- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PT--EVVFTVSD----------EDSEKAKEILEN-L-G-L- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cc--eEEEEEcH----------HHHHHHHHHHHH-h-C-C-
Confidence 445666665554 999999999999999999966332 11 23455532 112233333332 1 0 0
Q ss_pred CCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHHHH
Q 017375 126 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTVCT 202 (372)
Q Consensus 126 ~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~~~ 202 (372)
.+.+ ..+...|.|.+ .++||+++++..+
T Consensus 332 ---------------------------------------------~v~~----~~~~a~isvvG~~~~~~~g~~~~i~~a 362 (403)
T PRK08210 332 ---------------------------------------------KPSV----RENCAKVSIVGAGMAGVPGVMAKIVTA 362 (403)
T ss_pred ---------------------------------------------cEEE----eCCcEEEEEEcCCcCCCccHHHHHHHH
Confidence 0111 12345666665 4799999999999
Q ss_pred HHhCCceEEE
Q 017375 203 LTDMQYVVFH 212 (372)
Q Consensus 203 L~~~glnI~~ 212 (372)
|++.|+||..
T Consensus 363 L~~~~I~i~~ 372 (403)
T PRK08210 363 LSEEGIEILQ 372 (403)
T ss_pred HHhCCCCEEE
Confidence 9999999974
No 195
>PRK09224 threonine dehydratase; Reviewed
Probab=89.23 E-value=19 Score=37.34 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH-H-----
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA-I----- 253 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~-L----- 253 (372)
.....+.|.-|||||-|..++.+|. +.||...+-.-.+.....+|......+. +...+.|.+.|.+. .
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 3466889999999999999999999 5777765544333223334433332221 11256677666543 0
Q ss_pred --------------hccCC---CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 254 --------------ERRVS---EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 254 --------------~~r~~---~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
.+|.+ ..-.+.+.=+.|||-|-++...|. -+-||...+-.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 11232 235788899999999999999777 77899998864
No 196
>PLN02317 arogenate dehydratase
Probab=88.95 E-value=2.1 Score=42.73 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=47.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe---------------eeeEEEEEcCCCCCCCHHHHHHHHHH
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK---------------AVNTFYVGGASGYPVDAKIIDSIRQS 325 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~---------------~~d~F~v~~~~g~~~~~~~~~~l~~~ 325 (372)
|.|-+.-.|+||.|+++-.+|+.+|||+.+.+-.-...+ -+=.||| |..|..-++ .++..-+.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~-~~~~aL~~ 361 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADP-RAQNALAH 361 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCH-HHHHHHHH
Confidence 777778889999999999999999999999997765443 2348888 566754443 33333344
Q ss_pred HHH
Q 017375 326 IGQ 328 (372)
Q Consensus 326 l~~ 328 (372)
|.+
T Consensus 362 L~~ 364 (382)
T PLN02317 362 LQE 364 (382)
T ss_pred HHH
Confidence 443
No 197
>PRK09034 aspartate kinase; Reviewed
Probab=88.94 E-value=30 Score=35.46 Aligned_cols=111 Identities=9% Similarity=0.132 Sum_probs=66.7
Q ss_pred CeEEEEEEe---cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 47 DHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 47 ~~t~i~v~~---~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
+.+.|++.. ++++|.+++|..+|+++|++|.-- +.+ ...-.|.|... . + +...+..+...|. .+
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss-~~sis~~v~~~--~--~-~~a~~~~l~~el~----~~ 373 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSG-IDDLSIIIRER--Q--L-TPKKEDEILAEIK----QE 373 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCC-CcEEEEEEeHH--H--h-hHHHHHHHHHHHH----Hh
Confidence 345666664 668999999999999999999864 222 23345767541 1 1 1000012222221 11
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTV 200 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~ 200 (372)
... ..|.+. .+...|.+.+ .+.||+++++.
T Consensus 374 ~~~-------------------------------------------~~I~~~----~~va~VsivG~g~~~~~gv~arif 406 (454)
T PRK09034 374 LNP-------------------------------------------DELEIE----HDLAIIMVVGEGMRQTVGVAAKIT 406 (454)
T ss_pred hCC-------------------------------------------ceEEEe----CCEEEEEEECCCCCCCccHHHHHH
Confidence 100 112221 2456777765 47899999999
Q ss_pred HHHHhCCceEEEEEEEe
Q 017375 201 CTLTDMQYVVFHANIDA 217 (372)
Q Consensus 201 ~~L~~~glnI~~A~I~T 217 (372)
.+|+++|+||......+
T Consensus 407 ~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 407 KALAEANINIQMINQGS 423 (454)
T ss_pred HHHHHCCCCEEEEEecC
Confidence 99999999998765433
No 198
>PRK14646 hypothetical protein; Provisional
Probab=88.69 E-value=5.7 Score=34.54 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCC
Q 017375 194 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDR 270 (372)
Q Consensus 194 GLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~Dr 270 (372)
-+...+..++..+|+.+.+......+ ++++ ..+|..++|..++- +.++.+-+.+.+.|+. -.+..|.|||+++.=
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 45667888899999999999999876 4555 45565444444555 4788899999888874 356789999997644
Q ss_pred cchHHHHHHHHHhCCceE
Q 017375 271 VGLLSNVTRIFRENSLTV 288 (372)
Q Consensus 271 pGlL~~It~~L~~~gi~I 288 (372)
---|..--.+-+-.|=.|
T Consensus 86 dRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 86 SDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCcCCCHHHHHHhCCCEE
Confidence 334666666666656444
No 199
>PRK12483 threonine dehydratase; Reviewed
Probab=88.44 E-value=24 Score=36.82 Aligned_cols=136 Identities=8% Similarity=0.081 Sum_probs=82.1
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHH-HHHHHHHHHH------
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAER-ERVIQCLKAA------ 252 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~-e~l~~~L~~~------ 252 (372)
.....+.|.-+||||-|.+++.+|... ||.+..-......-..++......+ .+.. +.|.+.|.+.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence 456688999999999999999999988 7776554433322223333332211 1233 5666665433
Q ss_pred --------------HhccCC---CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC
Q 017375 253 --------------IERRVS---EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD 315 (372)
Q Consensus 253 --------------L~~r~~---~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~ 315 (372)
+.+|.+ +.-.+.|.=+.|||-|.++++.|... -||+..+=.-.|.....+|.=-. +.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~-----~~ 489 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ-----VP 489 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe-----eC
Confidence 011232 34688899999999999999999852 34444443333555555654322 12
Q ss_pred HHHHHHHHHHHHH
Q 017375 316 AKIIDSIRQSIGQ 328 (372)
Q Consensus 316 ~~~~~~l~~~l~~ 328 (372)
+++.+.+.+.|.+
T Consensus 490 ~~~~~~~~~~l~~ 502 (521)
T PRK12483 490 EDERAALDAALAA 502 (521)
T ss_pred hhHHHHHHHHHHH
Confidence 2345666666654
No 200
>PRK06382 threonine dehydratase; Provisional
Probab=88.42 E-value=3.2 Score=41.79 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe----e-CCeEEEEEEEe
Q 017375 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA----E-GPEAYQEYFIR 229 (372)
Q Consensus 179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T----~-g~~~~d~F~V~ 229 (372)
....+.+.|.-+|+||-|.+++..|.++|+||.+..... . .+...-+|.|.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve 382 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN 382 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE
Confidence 356779999999999999999999999999998766541 1 24455455554
No 201
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.26 E-value=4.3 Score=31.25 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=36.7
Q ss_pred EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
.+.|.-+|+||=|++++.+|. +.||....-.-. .+.+.-.+.+.-+ ++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence 577889999999999999999 667664433332 2333223333321 10 3445666666654
No 202
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.86 E-value=5.2 Score=30.15 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=39.2
Q ss_pred eEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHH-HHHHHHHH
Q 017375 261 LKLELC---TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIID-SIRQSIGQ 328 (372)
Q Consensus 261 t~lev~---~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~-~l~~~l~~ 328 (372)
+.|+|. ..++||++++|..+|+++||+|..... ++ ..=.|-|.. ......+.+. +|..+|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~--~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN--TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec--cccchhHHHHHHHHHHHHh
Confidence 356663 468899999999999999999999842 22 333444432 2222222333 56666655
No 203
>PRK14634 hypothetical protein; Provisional
Probab=87.84 E-value=6.7 Score=34.08 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC-
Q 017375 193 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT- 268 (372)
Q Consensus 193 pGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~- 268 (372)
.-+-..+..++..+|+.+.+..+...+ ++++- .+|..++|..++- +.++.+-+.+...|+. -.+..|.|||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lr-V~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQ-VQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEE-EEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 345666777889999999999998876 45554 4565556654655 4788899999888874 2467899999976
Q ss_pred -CCcchHHHHHHHHHhCCc
Q 017375 269 -DRVGLLSNVTRIFRENSL 286 (372)
Q Consensus 269 -DrpGlL~~It~~L~~~gi 286 (372)
||| |..--++-+-.|=
T Consensus 85 ldRp--L~~~~~f~r~~G~ 101 (155)
T PRK14634 85 IGDQ--LSSDRDFQTFRGF 101 (155)
T ss_pred CCCc--CCCHHHHHHhCCC
Confidence 555 5455555555443
No 204
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.66 E-value=3.6 Score=31.01 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=38.2
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCC-CCHHHHHHHHHHHHH
Q 017375 267 TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYP-VDAKIIDSIRQSIGQ 328 (372)
Q Consensus 267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~-~~~~~~~~l~~~l~~ 328 (372)
..+.||++++|-++|+++|++|...-. ++ ..=.|-|.. ... +.++.+++|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~--~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDP--DPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeC--cccccchHHHHHHHHHHHh
Confidence 457899999999999999999999842 33 222444432 221 344466777777765
No 205
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=87.55 E-value=1.1 Score=46.69 Aligned_cols=62 Identities=19% Similarity=0.460 Sum_probs=45.8
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQ 324 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~ 324 (372)
.++.+-+.-.|+||.+..|+..|.+++|||..+++.-. |+.+.=++-+ ..+++++.+++|++
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 35666667799999999999999999999999998755 4444433333 33677767777764
No 206
>PRK14636 hypothetical protein; Provisional
Probab=87.39 E-value=5.8 Score=35.26 Aligned_cols=91 Identities=10% Similarity=0.069 Sum_probs=63.0
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC
Q 017375 192 RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT 268 (372)
Q Consensus 192 rpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~ 268 (372)
.+-+...+..++..+|+.+.+..+...+ .+++- .+|..+++..++- +.++.+-+.|...|+. -.+..|.|||+++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lr-V~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP 81 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQ-IMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSP 81 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence 3446667888899999999999998876 45554 4454444344554 4788899999988874 3567899999976
Q ss_pred --CCcchHHHHHHHHHhCCc
Q 017375 269 --DRVGLLSNVTRIFRENSL 286 (372)
Q Consensus 269 --DrpGlL~~It~~L~~~gi 286 (372)
||| |..--.+-+-.|=
T Consensus 82 GldRp--L~~~~df~r~~G~ 99 (176)
T PRK14636 82 GIDRP--LTRPKDFADWAGH 99 (176)
T ss_pred CCCCC--CCCHHHHHHhCCC
Confidence 555 4444444444443
No 207
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.09 E-value=5.2 Score=30.77 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=37.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
++.|.-+||||=|.+++++|+ +.||....-.-.+ +.+.-.+-+....| .++.+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 577889999999999999999 4555544333222 33333333332211 3466777777665
No 208
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=87.08 E-value=24 Score=36.17 Aligned_cols=113 Identities=10% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCeEEEEEEecC---CccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375 180 KDYSVVTITSKD---RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 255 (372)
Q Consensus 180 ~~~t~v~V~~~D---rpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~- 255 (372)
.+.+.|+|.+.. .+|.++++...|.++|+||..-........ -.|.+... ..+...+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence 456677777543 459999999999999999976433322222 45666431 122233333333221
Q ss_pred --c--C-CCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 256 --R--V-SEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 256 --r--~-~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
+ . ..-..|.+.|. ..||+.+++.++|++.+|||.+.. .....=.|.|.
T Consensus 374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~ 429 (447)
T COG0527 374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVD 429 (447)
T ss_pred cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEc
Confidence 1 1 12356666654 679999999999999999999887 22333456663
No 209
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=86.93 E-value=2 Score=37.38 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=41.5
Q ss_pred eEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHH
Q 017375 261 LKLELCT--TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIR 323 (372)
Q Consensus 261 t~lev~~--~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~ 323 (372)
-+||+.. .+.||+|+.|+..++++|++|..+-..--.-..+-..||. .-+|+..+.+.+|+
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IV--te~~iP~~li~el~ 156 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIV--TERPIPGDLIDELK 156 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEE--EeccCCHHHHHHHh
Confidence 4555554 6679999999999999999999987543333444455553 24466665555554
No 210
>PRK11899 prephenate dehydratase; Provisional
Probab=86.75 E-value=4.5 Score=38.69 Aligned_cols=53 Identities=9% Similarity=0.235 Sum_probs=40.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCC
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSP 235 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~ 235 (372)
.|.+.+..+|+||.|+++.++|+.+|+|+.+-.-.-.+ +...-.|||. .+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECCC
Confidence 57777777999999999999999999999876665443 3345567774 56653
No 211
>PRK14630 hypothetical protein; Provisional
Probab=86.01 E-value=10 Score=32.56 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=60.9
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEeC--
Q 017375 192 RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-- 268 (372)
Q Consensus 192 rpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~~-- 268 (372)
.--+-..+..++..+|+.+.+......+ ++.+ ..+|..++| ++- +.++.+-+.+...|+.-.+..|.|||+++
T Consensus 7 ~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 7 NSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 3345667788899999999999988766 4555 444654444 444 47888888888888765577899999976
Q ss_pred CCcchHHHHHHHHHhCC
Q 017375 269 DRVGLLSNVTRIFRENS 285 (372)
Q Consensus 269 DrpGlL~~It~~L~~~g 285 (372)
||| |...-++-+-.|
T Consensus 83 dRp--L~~~~df~r~~G 97 (143)
T PRK14630 83 NRK--IKSDREFKIFEG 97 (143)
T ss_pred CCc--CCCHHHHHHhCC
Confidence 555 444444444444
No 212
>PRK06545 prephenate dehydrogenase; Validated
Probab=85.77 E-value=2.8 Score=41.38 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=36.5
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGP 220 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~ 220 (372)
..++.|.|.-+|+||-+++++..|...|+||.+-+|.-..+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~ 328 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE 328 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence 45789999999999999999999999999999999966443
No 213
>PRK14645 hypothetical protein; Provisional
Probab=85.74 E-value=12 Score=32.50 Aligned_cols=92 Identities=22% Similarity=0.266 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEeCC
Q 017375 193 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--VSEGLKLELCTTD 269 (372)
Q Consensus 193 pGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~~~~t~lev~~~D 269 (372)
.-+-..+..++..+|+.+.+..+...+ ++++- .+|..++|..++- +.++.+-+.+...|+.. .+..|.|||+++.
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 346677788999999999999998776 45554 4454334545655 47888999999888743 4678999999763
Q ss_pred CcchHHHHHHHHHhCCc
Q 017375 270 RVGLLSNVTRIFRENSL 286 (372)
Q Consensus 270 rpGlL~~It~~L~~~gi 286 (372)
----|...-.+.+-.|-
T Consensus 87 ldRpL~~~~df~r~~G~ 103 (154)
T PRK14645 87 PKRPLFTARHFERFAGL 103 (154)
T ss_pred CCCCCCCHHHHHHhCCC
Confidence 33335555566555553
No 214
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.49 E-value=4.8 Score=33.16 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=36.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS 234 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~ 234 (372)
.+.+.+..+|+||-|+++-..|+.+|+|+.+-.-.... ....-.|+|. .+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId-ieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR-CEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE-EEeC
Confidence 45666666999999999999999999999876655543 2222346663 3453
No 215
>PRK08198 threonine dehydratase; Provisional
Probab=85.24 E-value=6.6 Score=39.37 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 82 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~ 82 (372)
......+.|.-+|+||-|+++...++.+|.||.+-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34557899999999999999999999999999988765
No 216
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.09 E-value=1.9 Score=40.24 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=44.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEE--EEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ--EYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d--~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
..++.+...|.||++.+|+++|+..|+||.+--+.-....+.- +..+. |. + .-+|+.++.|+...
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~---Gt---d-~VveQa~rQiedlV 143 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ---GT---D-GVVEQARRQIEDLV 143 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe---cc---H-HHHHHHHHHHHHhh
Confidence 4588999999999999999999999999998777554433333 33333 21 2 24555555555443
No 217
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=84.78 E-value=5.7 Score=39.45 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=45.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-----CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-----SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT 329 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-----g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~ 329 (372)
+...+.|.-+||||.|.+|++.++++|.||.+..-... -+.+.=.+.+ +..+ .++.++|.+.|.+.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHHHHHHHHHHHHc
Confidence 34689999999999999999999999999988854311 1233333444 2222 34666777777653
No 218
>PLN02551 aspartokinase
Probab=84.72 E-value=55 Score=34.23 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=79.7
Q ss_pred CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375 46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 122 (372)
Q Consensus 46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 122 (372)
.+.+.|+|.+. +.+|.++++...|.++|++|.-- .|. + ..-.|.|... . . + ..+.+++.+.+.+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e-~sIs~~v~~~--~--~-~--~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-E-VSISLTLDPS--K--L-W--SRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-C-CEEEEEEehh--H--h-h--hhhhHHHHHHHHHHH
Confidence 34567777655 68999999999999999999854 332 2 2335666431 1 1 0 112333333221111
Q ss_pred CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec--CCccHHHHHH
Q 017375 123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK--DRPKLVFDTV 200 (372)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~--DrpGLL~~i~ 200 (372)
... ...|.+. .+...|.|.+. ..||+++++.
T Consensus 433 -l~~------------------------------------------~~~V~v~----~~vAiISvVG~~~~~~gvaariF 465 (521)
T PLN02551 433 -LEK------------------------------------------IAVVNLL----QGRSIISLIGNVQRSSLILEKVF 465 (521)
T ss_pred -hhc------------------------------------------CCeEEEe----CCEEEEEEEccCCCCccHHHHHH
Confidence 000 0112222 24566777654 6899999999
Q ss_pred HHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375 201 CTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI 253 (372)
Q Consensus 201 ~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L 253 (372)
.+|+..|+||..-...+.. .--.|.|.+ +..++..+.|...+
T Consensus 466 ~aLa~~gInV~mIsqgaSe--inIS~vV~~---------~d~~~Av~aLH~~F 507 (521)
T PLN02551 466 RVLRTNGVNVQMISQGASK--VNISLIVND---------DEAEQCVRALHSAF 507 (521)
T ss_pred HHHHHCCCCeEEEEecCCC--cEEEEEEeH---------HHHHHHHHHHHHHH
Confidence 9999999999864443322 222355532 23455555665554
No 219
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=84.66 E-value=5.4 Score=38.06 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=41.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCC
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPV 236 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~ 236 (372)
..|.+.+..+|+||-|+++-++|+.+|+|...-...-.+ +...-.||| |.+|..-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~ 248 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHID 248 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcC
Confidence 478888888999999999999999999998765554443 334445666 4566653
No 220
>PRK11898 prephenate dehydratase; Provisional
Probab=83.71 E-value=5.4 Score=38.17 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=46.1
Q ss_pred ceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 260 GLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 260 ~t~lev~~~-DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.|.|-+... |+||-|+++-..|+++|||+.+.+..-... .-+=.||| |.+|..-++ .++.+-+.|.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~~~~-~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHIDDV-LVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccCCCH-HHHHHHHHHHH
Confidence 355656664 469999999999999999999999876543 34557888 566754332 34444444443
No 221
>PRK08198 threonine dehydratase; Provisional
Probab=83.51 E-value=9.8 Score=38.15 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=33.0
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID 216 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~ 216 (372)
.....+.|.-+|+||-|.++...++++|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 4556899999999999999999999999999987665
No 222
>PRK09084 aspartate kinase III; Validated
Probab=82.81 E-value=15 Score=37.60 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=70.2
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375 180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 255 (372)
Q Consensus 180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~- 255 (372)
.+...|+|.+. +.+|.++++..+|+++|++|..-. +.. .--.|.|...+- . . .....+.+.+...+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~--~-~-~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGS--T-S-TGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhh--h-h-hhhHHHHHHHHHHHhcC
Confidence 45678888754 689999999999999999998764 222 233566653211 0 0 0112233333333432
Q ss_pred -c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375 256 -R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 306 (372)
Q Consensus 256 -r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v 306 (372)
+ .+.-..|.+.|. ++||++.++..+|++. +|.. -.+|...... |.|
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~---I~qgsSe~sIS~vV 429 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRM---ICYGASSHNLCFLV 429 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhC--CeEE---EEEcCCCCcEEEEE
Confidence 1 134577888876 7899999999999874 4433 3344554444 444
No 223
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=82.42 E-value=3 Score=38.89 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=32.5
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
+.-+|.+-..|-||+|.+|+-+|+..|.||.++-+-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 357889999999999999999999999999998764
No 224
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.14 E-value=10 Score=37.59 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.8
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 82 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~ 82 (372)
....+.|..+|+||-|++++..++++|.||.+-.-.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 445899999999999999999999999999987543
No 225
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=81.90 E-value=11 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=31.0
Q ss_pred EEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017375 263 LELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG 308 (372)
Q Consensus 263 lev~~---~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~ 308 (372)
|+|.+ .++||+.++|-++|+++|+++.... | ++ ..=.|++..
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 44543 4779999999999999999999983 3 22 444677743
No 226
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=81.83 E-value=6.8 Score=34.26 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=45.4
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L 120 (372)
...+.+.-.|.||-|+++++.|+..|+||.+-.+.-. +....=+-.|.. | ++...+.+..+|.+.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhc
Confidence 4567888899999999999999999999999887753 333222223333 2 2234566777776543
No 227
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=81.66 E-value=4.5 Score=41.21 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=42.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeee--eEEEEEcCCCCC
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAV--NTFYVGGASGYP 313 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~--d~F~v~~~~g~~ 313 (372)
.|.|-+...|+||-|+++-+.|+++|||+.+.+..-...... =.||| |..|..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~ 85 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFH 85 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCH
Confidence 467777779999999999999999999999999876655444 47888 445544
No 228
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.42 E-value=3.8 Score=42.77 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=39.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI 228 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V 228 (372)
..+..+.+...|+||.+..++..|.++++||...++... |+.++-++.+
T Consensus 450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 344566667799999999999999999999999998763 4677655555
No 229
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.22 E-value=4 Score=40.68 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=37.0
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375 181 DYSVVTITSK-DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 229 (372)
Q Consensus 181 ~~t~v~V~~~-DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~ 229 (372)
..+.+.+.-+ |+||-|+++..+|+.+|+||.+-.+.-...+-.- |+|.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence 3566777776 9999999999999999999999888333344433 7774
No 230
>PRK14640 hypothetical protein; Provisional
Probab=81.12 E-value=20 Score=30.99 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRV 271 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~Drp 271 (372)
+...+..++..+|+.+.+..+...+ ++.+ ..+|..++| ++- +.++.+-+.|..+|+. -.+..|.|||+++.--
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 4456777889999999999998876 4555 444544444 544 5788999999999874 2467899999976443
Q ss_pred chHHHHHHHHHhCCceE
Q 017375 272 GLLSNVTRIFRENSLTV 288 (372)
Q Consensus 272 GlL~~It~~L~~~gi~I 288 (372)
--|...-++-+-.|=.|
T Consensus 84 RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CcCCCHHHHHHhCCCeE
Confidence 34666666666666544
No 231
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=79.15 E-value=8 Score=39.21 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=42.2
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCC
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYP 313 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~ 313 (372)
.|.|-+...|+||-|++|-+.|+++|||+.+.+..-.. ..-+=.||| |..|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc
Confidence 36777778999999999999999999999999887543 334557888 455654
No 232
>PRK06349 homoserine dehydrogenase; Provisional
Probab=78.97 E-value=9.9 Score=38.54 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=40.7
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~ 96 (372)
....-|.+...|+||.|++|+++|.++|+||.+-......+....++.|++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 355788899999999999999999999999997765544444556667775
No 233
>PRK09181 aspartate kinase; Validated
Probab=78.56 E-value=86 Score=32.38 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=65.2
Q ss_pred CeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375 47 DHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS 123 (372)
Q Consensus 47 ~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~ 123 (372)
+.+.|+|.+. +.+|+.+++..+|.++|++|. .+.+. + ..-.|.|.. . . .+++++.+.|.+.+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~-~sis~~v~~--~---~---~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-A-NTITHYLWG--S---L---KTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-C-cEEEEEEcC--C---h---HHHHHHHHHHHHhcCC-
Confidence 5566677544 688999999999999999998 33332 2 234565643 1 1 1223333333321110
Q ss_pred CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecC--CccHHHHHHH
Q 017375 124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKD--RPKLVFDTVC 201 (372)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~D--rpGLL~~i~~ 201 (372)
..|.. .+...|.|++.. +||+.+++..
T Consensus 395 ----------------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~f~ 423 (475)
T PRK09181 395 ----------------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKAVQ 423 (475)
T ss_pred ----------------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHHHH
Confidence 01110 245677777654 8999999999
Q ss_pred HHHhCCceEEEEE
Q 017375 202 TLTDMQYVVFHAN 214 (372)
Q Consensus 202 ~L~~~glnI~~A~ 214 (372)
+|.+.|+||..-.
T Consensus 424 aL~~~~Ini~~i~ 436 (475)
T PRK09181 424 ALAEAGINVLALH 436 (475)
T ss_pred HHHHCCCCeEEEE
Confidence 9999999997633
No 234
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.54 E-value=3.8 Score=35.66 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=26.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEE
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI 215 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I 215 (372)
..+.....+.||+++.+++.++++||+|.++-.
T Consensus 96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 96 IEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred EEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 344444577899999999999999999998654
No 235
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=78.52 E-value=17 Score=26.98 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=39.6
Q ss_pred eEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-HHHHHHHHHHHHH
Q 017375 261 LKLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD-AKIIDSIRQSIGQ 328 (372)
Q Consensus 261 t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~-~~~~~~l~~~l~~ 328 (372)
+.+.+.+ .+.||++++|.++|++.|+++...- + ++ ..=.|.|.. ..... ...+.+|+.+|..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~--~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP--TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc--hhhccchHHHHHHHHHHHh
Confidence 3566643 5789999999999999999997764 2 22 223444432 22221 2356677777766
No 236
>PLN02550 threonine dehydratase
Probab=78.42 E-value=83 Score=33.45 Aligned_cols=134 Identities=12% Similarity=0.138 Sum_probs=82.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA------I 253 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~------L 253 (372)
....+.|.-+||||-|.+++.+|... ||.+..-.-.. +.+.-.+-|. .. .++..++|.+.|.+. |
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG-VH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE-eC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 44678999999999999999999986 77654443322 3333222232 11 234667777776654 1
Q ss_pred h--------------ccC--CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHH
Q 017375 254 E--------------RRV--SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAK 317 (372)
Q Consensus 254 ~--------------~r~--~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~ 317 (372)
. +|. .+.-.+.+.=+.|||-|.++...|... -||...+=...++....+|.=-. +.++
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vlvGi~-----v~~~ 561 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVLVGIQ-----VPPE 561 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEEEEEe-----eCHH
Confidence 0 111 123578888999999999999988752 35555554444555555554322 2234
Q ss_pred HHHHHHHHHHH
Q 017375 318 IIDSIRQSIGQ 328 (372)
Q Consensus 318 ~~~~l~~~l~~ 328 (372)
..+.+.+.|.+
T Consensus 562 e~~~l~~~l~~ 572 (591)
T PLN02550 562 EMQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHHH
Confidence 56677776654
No 237
>PRK14637 hypothetical protein; Provisional
Probab=78.39 E-value=27 Score=30.21 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=62.4
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccC-CCceEEEEEeC
Q 017375 191 DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV-SEGLKLELCTT 268 (372)
Q Consensus 191 DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~-~~~t~lev~~~ 268 (372)
---|....+..++..+|+.+.+..+...+ ++.+-+| |..+.| ++- +.++.+-+.+..+|+.-. +..+.|||+++
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSP 81 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSP 81 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCC
Confidence 34577888999999999999999999876 4565544 543333 444 478888888888886422 35689999976
Q ss_pred CCcchHHHHHHHHHhCCc
Q 017375 269 DRVGLLSNVTRIFRENSL 286 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi 286 (372)
.--.-|...-++-+-.|=
T Consensus 82 GldRpL~~~~~f~r~~G~ 99 (151)
T PRK14637 82 GIERVIKNAAEFSIFVGE 99 (151)
T ss_pred CCCCCCCCHHHHHHhCCC
Confidence 333335555555555443
No 238
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=78.12 E-value=11 Score=37.71 Aligned_cols=54 Identities=4% Similarity=0.169 Sum_probs=40.5
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCC
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSP 235 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~ 235 (372)
..|.+.+..+|+||.|+++-+.|+..|+|+..-.-.-. ++...-.|||. .+|..
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCCC
Confidence 36667677789999999999999999999987666533 34455567774 56643
No 239
>PRK14639 hypothetical protein; Provisional
Probab=77.94 E-value=23 Score=30.14 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=59.2
Q ss_pred HHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCcchHH
Q 017375 199 TVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRVGLLS 275 (372)
Q Consensus 199 i~~~L~~~glnI~~A~I~T~g~-~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~DrpGlL~ 275 (372)
+..++..+|+.+.+......++ +.+ ..+|....| ++- +.++.+-+.+.+.|+. -.+..|.|||+++.----|.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~ 78 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIY-RVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLS 78 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEE-EEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCC
Confidence 3457889999999999998775 555 444543333 554 4789999999999874 24678999999764333355
Q ss_pred HHHHHHHhCCceE
Q 017375 276 NVTRIFRENSLTV 288 (372)
Q Consensus 276 ~It~~L~~~gi~I 288 (372)
..-.+-+-.|-.|
T Consensus 79 ~~~~f~r~~G~~v 91 (140)
T PRK14639 79 KIEHFAKSIGELV 91 (140)
T ss_pred CHHHHHHhCCCEE
Confidence 5555555555544
No 240
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=77.72 E-value=1.2e+02 Score=33.61 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375 46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 122 (372)
Q Consensus 46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 122 (372)
.+...|.|.+. .+||+++++..+|.++|++|.-....+ .+ .--.|.|.. +..++....|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se-~sIsf~V~~----------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SE-YSISFCVPQ----------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CC-ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 46677888765 678999999999999999997543332 22 223555543 1122223333332221
Q ss_pred CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHH
Q 017375 123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDT 199 (372)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i 199 (372)
+... . ....|.+. .+...|.|.+. ++||+++++
T Consensus 381 el~~----~------------------------------------~~~~i~~~----~~valIsvvG~gm~~~~gv~ari 416 (819)
T PRK09436 381 ELKE----G------------------------------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAAKF 416 (819)
T ss_pred Hhcc----C------------------------------------CcceEEEe----CCEEEEEEEccCcccCcCHHHHH
Confidence 1100 0 00122332 34677888875 789999999
Q ss_pred HHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCcc--hHHHH
Q 017375 200 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVG--LLSNV 277 (372)
Q Consensus 200 ~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~~DrpG--lL~~I 277 (372)
..+|.+.|+||......+..... .|.|.. +..+...+.|...+-. ......|-+.|....| ++..+
T Consensus 417 f~aL~~~~InI~~IsqgsSe~~I--s~vV~~---------~d~~~al~~LH~~f~~-~~~~~~i~l~G~G~VG~~~~~~l 484 (819)
T PRK09436 417 FSALGRANINIVAIAQGSSERSI--SVVIDN---------DDATKALRACHQSFFL-SDQVLDVFVIGVGGVGGALLEQI 484 (819)
T ss_pred HHHHHHCCCCEEEEEeccccceE--EEEEcH---------HHHHHHHHHHHHHHhc-ccccccEEEEecCHHHHHHHHHH
Confidence 99999999999875444433222 244532 1334444455555421 1245666666666555 23332
Q ss_pred H---HHHHhCCceEEEEEEe
Q 017375 278 T---RIFRENSLTVTRAEVA 294 (372)
Q Consensus 278 t---~~L~~~gi~I~~a~i~ 294 (372)
. ..|.+.|+++.-..|.
T Consensus 485 ~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 485 KRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred HHHHHHHHhcCCcEEEEEEE
Confidence 2 2344446666544443
No 241
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.04 E-value=23 Score=24.95 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=26.2
Q ss_pred EEEEEe---cCCccHHHHHHHHHHhCCceEEEEEE
Q 017375 184 VVTITS---KDRPKLVFDTVCTLTDMQYVVFHANI 215 (372)
Q Consensus 184 ~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I 215 (372)
.|.+.| ++.||+++++.++|++.|++|.....
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 455665 47899999999999999999976544
No 242
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=76.82 E-value=7.7 Score=40.41 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=33.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g 297 (372)
.++|.|.||.|+..+|-..|...+|++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 589999999999999999999999999999997763
No 243
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=76.61 E-value=34 Score=29.56 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--VSEGLKLELCTTDRV 271 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~~~~t~lev~~~Drp 271 (372)
+-..+..++..+|+.+.+..+...+ +..+- .+|....| ++- +.++.+-+.+..+|+.. .+..|.|||+++.--
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~-V~Id~~~g--v~i-ddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLR-IYIDKEGG--IDL-DDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEE-EEEECCCC--CCH-HHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 4455678899999999999999876 44444 44543334 444 58889999999988742 457899999976333
Q ss_pred chHHHHHHHHHhCCc
Q 017375 272 GLLSNVTRIFRENSL 286 (372)
Q Consensus 272 GlL~~It~~L~~~gi 286 (372)
--|...-++-+-.|=
T Consensus 85 RpL~~~~~f~r~~G~ 99 (154)
T PRK00092 85 RPLKKARDFRRFIGR 99 (154)
T ss_pred CcCCCHHHHHHhCCC
Confidence 334444444444443
No 244
>PRK14638 hypothetical protein; Provisional
Probab=76.55 E-value=35 Score=29.40 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--VSEGLKLELCTTDRV 271 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~~~~t~lev~~~Drp 271 (372)
+-..+..++..+|+.+.+......+ ++.+-+| |..++| .++- +.++.+-+.|...|+.. .+..|.|||+++.--
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~-ID~~~G-~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRII-IDNPVG-YVSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCC-CcCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 4455677889999999999998876 4555444 543334 2444 47888999999888742 467899999976333
Q ss_pred chHHHHHHHHHhCCce
Q 017375 272 GLLSNVTRIFRENSLT 287 (372)
Q Consensus 272 GlL~~It~~L~~~gi~ 287 (372)
--|...-+.-+-.|=.
T Consensus 87 RpL~~~~~f~r~~G~~ 102 (150)
T PRK14638 87 RPLRGPKDYVRFTGKL 102 (150)
T ss_pred CCCCCHHHHHHhCCCE
Confidence 3355555555555533
No 245
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=76.48 E-value=9.2 Score=33.46 Aligned_cols=65 Identities=11% Similarity=0.210 Sum_probs=46.9
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~ 254 (372)
-.+.+.-.|.||.|.++++.|+..|+||.+-.+.-.. +...-++.+ . | ++ ...|++...|...++
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~--g---~~-~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S--G---DE-QVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c--C---Cc-chHHHHHHHHHhhcc
Confidence 4678888999999999999999999999998886543 333333333 2 2 11 356788887777665
No 246
>PRK14647 hypothetical protein; Provisional
Probab=76.45 E-value=34 Score=29.75 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--VSEGLKLELCTTDRV 271 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g~-~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~~~~t~lev~~~Drp 271 (372)
+-..+..++..+|+.+.+..+...++ +++-+ +|..+.| ++- +.++.+-+.+...|+.. .+..|.|||+++.--
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV-~ID~~~g--vsl-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRL-FIDKEGG--VNL-DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEE-EEeCCCC--CCH-HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 44456777899999999999998774 55544 4543333 443 47888999999988742 567899999976333
Q ss_pred chHHHHHHHHHhCCceE
Q 017375 272 GLLSNVTRIFRENSLTV 288 (372)
Q Consensus 272 GlL~~It~~L~~~gi~I 288 (372)
--|...-+.-+-.|-.|
T Consensus 86 RpL~~~~~f~r~~G~~v 102 (159)
T PRK14647 86 RPLKKEADYERYAGRLV 102 (159)
T ss_pred CcCCCHHHHHHhCCcEE
Confidence 33555555555555433
No 247
>PRK14643 hypothetical protein; Provisional
Probab=75.69 E-value=36 Score=29.83 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEee---CCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEGP-EAYQEYFIRH---IDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT 268 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g~-~~~d~F~V~~---~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~ 268 (372)
+-..+..++..+|+.+.+....+.++ +++ ..+|.+ ++| .++- +.++.+-+.+.+.|+. -.+..|.|||+++
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~l-rV~Id~~~~~~g-gvtl-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 87 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMI-QILVEDILQANK-PLDF-DILIKANDLVSNKIDQFIKTSEKYLLEISSS 87 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEecCCCcCC-CcCH-HHHHHHHHHHHHHhCccCCCCCCeEEEecCC
Confidence 44556778899999999999999874 555 455643 233 3544 4788888899988873 3577899999977
Q ss_pred CCcchHHHHHHHHHhCCceE
Q 017375 269 DRVGLLSNVTRIFRENSLTV 288 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi~I 288 (372)
.----|...-.+-+-.|=.|
T Consensus 88 GleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 88 GIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCCHHHHHHhcCCeE
Confidence 44444655555555555544
No 248
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.57 E-value=25 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=28.0
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 262 KLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 262 ~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
.|.+.| .+.||++++|.++|++.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 466666 4789999999999999999998885433
No 249
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=73.94 E-value=7.5 Score=26.29 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=26.9
Q ss_pred EEEEEeCC---CcchHHHHHHHHHhCCceEEEEEEe
Q 017375 262 KLELCTTD---RVGLLSNVTRIFRENSLTVTRAEVA 294 (372)
Q Consensus 262 ~lev~~~D---rpGlL~~It~~L~~~gi~I~~a~i~ 294 (372)
.+++.+.+ .+|+++++.++|++++++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 45666555 8999999999999999999877543
No 250
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=73.83 E-value=6 Score=41.28 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=38.7
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEe
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVT 95 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~ 95 (372)
+...+.+.-.|+||....++..|.++++||...++.- .++.++-++.+.
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 3444556669999999999999999999999888876 356666666553
No 251
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=73.64 E-value=41 Score=37.42 Aligned_cols=102 Identities=9% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375 180 KDYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER- 255 (372)
Q Consensus 180 ~~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~- 255 (372)
.+.+.|+|.+ .+.+|.++++.+.|+++|++|..- .+.. ..-+|.+.+.+ .......++.+...|.. +..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~--~~~~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSE--NLVNTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEcccc--ccchHHHHHHHHHHHhh-cCcE
Confidence 3567788853 468999999999999999999765 2322 22235554321 11011233444444331 110
Q ss_pred c-CCCceEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 017375 256 R-VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTV 288 (372)
Q Consensus 256 r-~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I 288 (372)
. ...-.+|.|.|. .+||++.++..+|++.||++
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1 123577888876 78999999999999977544
No 252
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.11 E-value=37 Score=25.46 Aligned_cols=38 Identities=5% Similarity=-0.069 Sum_probs=28.6
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 017375 189 SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRH 230 (372)
Q Consensus 189 ~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~ 230 (372)
.+++||+++++..+|+++|+||..-. + +. .--.|.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 57889999999999999999998753 2 22 334466653
No 253
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=73.10 E-value=1.2e+02 Score=31.46 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=68.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH-H-----
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA-I----- 253 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~-L----- 253 (372)
.....+.|.-|||||-|.+++.+|.. .||...+-.-.+.....+|...... .++..+.+.+.|.+. .
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEEC
Confidence 45668899999999999999999997 4666554443332223344433322 224667777777653 0
Q ss_pred --------------hccCCC---ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 254 --------------ERRVSE---GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 254 --------------~~r~~~---~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
.+|.+. .-...+.=+-|||-|-++-.+|. -+-||...+-
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Y 451 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHY 451 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEE
Confidence 012322 35788889999998888766443 2448888775
No 254
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=72.75 E-value=20 Score=26.75 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=36.5
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 268 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 268 ~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.-.||++++|-++|+++|++|...-. ++ ..=.|-+. .. .+.++.+++|.++|..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~--~~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALH--ME-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEe--hh-hcChHHHHHHHHHHHH
Confidence 35699999999999999999999852 33 22234443 22 2233366777777766
No 255
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.22 E-value=19 Score=24.53 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.0
Q ss_pred ecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEec
Q 017375 55 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 96 (372)
Q Consensus 55 ~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~ 96 (372)
.+|.+|.++++...|..+|++|........ +|...-.|.|.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 578899999999999999999976544322 233334566643
No 256
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.18 E-value=32 Score=24.33 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=28.1
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 262 KLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 262 ~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
.|.+.|. ++||++++|.++|++.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566655 789999999999999999998886544
No 257
>PLN02317 arogenate dehydratase
Probab=72.17 E-value=20 Score=35.90 Aligned_cols=36 Identities=6% Similarity=0.175 Sum_probs=30.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA 217 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T 217 (372)
.|.|.+.-+|+||-|+++-.+|+.+|+|+..-.-.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP 318 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP 318 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence 477777779999999999999999999998766544
No 258
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=71.54 E-value=37 Score=25.19 Aligned_cols=62 Identities=5% Similarity=-0.009 Sum_probs=36.9
Q ss_pred EEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 184 VVTIT---SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 184 ~v~V~---~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.|++. ..+.||+++++..+|+++|+++..-. +.+ .--.|.|.. .....+...+..|.+.|..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~--~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP--TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc--hhhccchHHHHHHHHHHHh
Confidence 45553 36789999999999999999996542 322 223355543 2221111245555555543
No 259
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.26 E-value=22 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 267 TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
..+.||++++|-++|+++|++|..... ++ ..=.|-|.
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~ 47 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLD 47 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEE
Confidence 458899999999999999999999842 33 33355554
No 260
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=70.49 E-value=36 Score=24.27 Aligned_cols=28 Identities=18% Similarity=0.506 Sum_probs=24.7
Q ss_pred EEEEEec---CccchHHHHHHHHHhcCceEE
Q 017375 50 AIELTGS---DRPGLLSEVSAVLTHLKCNVV 77 (372)
Q Consensus 50 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~ 77 (372)
.|.|.+. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 789999999999999999996
No 261
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.47 E-value=16 Score=24.95 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.5
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEE
Q 017375 267 TTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVG 307 (372)
Q Consensus 267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~ 307 (372)
..|.||++.++.++|+++|++|........+ +...=.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4688999999999999999999887653222 2233346553
No 262
>PRK14633 hypothetical protein; Provisional
Probab=69.78 E-value=64 Score=27.79 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCcc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRVG 272 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~DrpG 272 (372)
+-..+..++..+|+.+.+......+++.+-+| |..++| ++- +.++.+-+.|...|+. -.+..|.|||+++.---
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~G--v~l-ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENG--VSV-DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCC--CCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 34567778999999999999987776655444 543444 444 4788899999888874 34678999999764333
Q ss_pred hHHHHHHHHHhCCce
Q 017375 273 LLSNVTRIFRENSLT 287 (372)
Q Consensus 273 lL~~It~~L~~~gi~ 287 (372)
-|...-++-+-.|=.
T Consensus 82 pL~~~~~f~r~~G~~ 96 (150)
T PRK14633 82 QIFNIIQAQALVGFN 96 (150)
T ss_pred CCCCHHHHHHhCCCe
Confidence 466666666665544
No 263
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=69.66 E-value=14 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.9
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375 267 TTDRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 267 ~~DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
..|+||.+++|.+.|++.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999986653
No 264
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=69.59 E-value=40 Score=25.86 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=50.4
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK 121 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~ 121 (372)
...+.+.++++|+.|.++-++-...|..|.....++. .|.+---|.|.. ..++ +.|...|.++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 4678899999999999999999999999998888883 666666676643 2333 577778876543
No 265
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.36 E-value=37 Score=23.96 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.1
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 017375 184 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDA 217 (372)
Q Consensus 184 ~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T 217 (372)
.|.+.+. ++||+++++.++|++.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 689999999999999999997665444
No 266
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=69.25 E-value=31 Score=29.15 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=44.4
Q ss_pred cCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEec
Q 017375 43 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTD 96 (372)
Q Consensus 43 ~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~ 96 (372)
.....-..+.+.-.||.|.|+++-.++++.+|||+.-+-.- .+|++--+..+..
T Consensus 67 m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 67 MLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 34455677889999999999999999999999999887776 5888776666654
No 267
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=68.77 E-value=32 Score=24.51 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.7
Q ss_pred ecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEe
Q 017375 55 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT 95 (372)
Q Consensus 55 ~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~ 95 (372)
.+|.||.++++...|.++|++|.-...... ++...-.|.|.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 478999999999999999999984433222 22233346554
No 268
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=68.24 E-value=84 Score=34.79 Aligned_cols=101 Identities=7% Similarity=0.022 Sum_probs=65.3
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH-Hhc
Q 017375 180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA-IER 255 (372)
Q Consensus 180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~-L~~ 255 (372)
.+.+.|+|.+. +.+|.++++..+|+++|++|..-...+... .-.|.+.. ...+.+.+.|... ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 45667788765 788999999999999999987654332222 22344431 1223333333322 111
Q ss_pred c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 017375 256 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRA 291 (372)
Q Consensus 256 r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a 291 (372)
+ ......|.|.|. .+||+..++..+|++.+|++...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 123467888875 58999999999999999998553
No 269
>PRK08526 threonine dehydratase; Provisional
Probab=68.13 E-value=46 Score=33.50 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe----eeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcc
Q 017375 258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK----AVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKV 333 (372)
Q Consensus 258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~----~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~ 333 (372)
.+...+.+.-+||||-|.++++.+.+.+.||....=...... ...++...... +.+++++|.+.|.+.=..+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~l~~~g~~~ 399 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEHQEEIRKILTEKGFNF 399 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHHHHHHHHHHHHCCCCe
Confidence 456899999999999999999999999999998775443222 12222222222 3567888888886643333
No 270
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=68.12 E-value=41 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.4
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEE
Q 017375 184 VVTITSK---DRPKLVFDTVCTLTDMQYVVF 211 (372)
Q Consensus 184 ~v~V~~~---DrpGLL~~i~~~L~~~glnI~ 211 (372)
.|.|.+. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999996
No 271
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=66.60 E-value=31 Score=29.18 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCcchHHH
Q 017375 199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRVGLLSN 276 (372)
Q Consensus 199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~DrpGlL~~ 276 (372)
+..++..+|+.+.+..+...++...-..+|.. ++. ++- +.++.+-+.+...|+. -.+..|.|||+++.----|..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~l-ddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~ 78 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSL-DDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKS 78 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----H-HHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SS
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCH-HHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCC
Confidence 45678899999999999998865433344543 333 554 4778888888877764 346789999997633333433
Q ss_pred HHHHHHhCC
Q 017375 277 VTRIFRENS 285 (372)
Q Consensus 277 It~~L~~~g 285 (372)
.-+.-.-.|
T Consensus 79 ~~~~~~~iG 87 (141)
T PF02576_consen 79 PRDFERFIG 87 (141)
T ss_dssp HHHHHHH-S
T ss_pred HHHHHHhcC
Confidence 333333334
No 272
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.01 E-value=43 Score=23.43 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=32.0
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 262 KLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 262 ~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
.+.+.|. +.||+++++.+.|++.|++|......+.+ ..=.|.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 4566664 77999999999999999999888654422 22236663
No 273
>PRK14632 hypothetical protein; Provisional
Probab=65.77 E-value=74 Score=28.10 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCcc
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRVG 272 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~DrpG 272 (372)
+-..+..++..+|+.+.+......+.+.+-+ +|....| ++- +.++.+-+.|..+|+. -.+..|.|||+++.---
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV-~ID~~~G--V~l-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRL-FVDGPEG--VTI-DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEE-EEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 4445667788999999999987544555544 4543334 444 4788899999988874 24678999999763333
Q ss_pred hHHHHHHHHHhCCc
Q 017375 273 LLSNVTRIFRENSL 286 (372)
Q Consensus 273 lL~~It~~L~~~gi 286 (372)
-|...-++-+-.|=
T Consensus 86 pL~~~~~f~r~iG~ 99 (172)
T PRK14632 86 PFFRAEQMSPYVGR 99 (172)
T ss_pred cCCCHHHHHHhCCC
Confidence 35555555555443
No 274
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=64.43 E-value=41 Score=25.82 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=40.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYV 306 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v 306 (372)
.+.+++.+.++|+.|.+|-++-...|..|-...-++. ++.+.--|-|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4789999999999999999999999999998888776 6666666666
No 275
>PRK08526 threonine dehydratase; Provisional
Probab=64.13 E-value=54 Score=33.01 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=34.4
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT 83 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T 83 (372)
.+....+.|.-+||||-|++++..+...+.||.+-.-..
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 556788999999999999999999999999999876644
No 276
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=62.99 E-value=74 Score=32.05 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=45.2
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe-ecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~-T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+...+.+.-+||||=|.++.+.+...+-||...+-. ..+.....++..-...+ .++.+++.+.|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 3568999999999999999999666666699977654 33333333333322222 4577788887765
No 277
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.43 E-value=15 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=25.2
Q ss_pred EEEEEecC---CccHHHHHHHHHHhCCceEEEEEE
Q 017375 184 VVTITSKD---RPKLVFDTVCTLTDMQYVVFHANI 215 (372)
Q Consensus 184 ~v~V~~~D---rpGLL~~i~~~L~~~glnI~~A~I 215 (372)
.|+|.+.+ .+|.++++.++|++++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 34555544 899999999999999999976543
No 278
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.16 E-value=64 Score=24.10 Aligned_cols=57 Identities=5% Similarity=-0.024 Sum_probs=37.2
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 189 SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 189 ~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.++.||+++++.++|+++|+||..-. + +. .--.|.|.... ..+.. +.+++|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence 46789999999999999999998753 2 22 33346564322 11333 256667766654
No 279
>PRK11898 prephenate dehydratase; Provisional
Probab=62.14 E-value=41 Score=32.12 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=41.3
Q ss_pred eEEEEEEecC-CccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 182 YSVVTITSKD-RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 182 ~t~v~V~~~D-rpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
.+.+.+..++ +||-|+++-..|+.+|+|+.+-.-.-.. ....-.|||. .+|.. .++ ..+.+.+.|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd-~eg~~-~~~-~~~~al~~L~ 263 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID-VEGHI-DDV-LVAEALKELE 263 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE-EEccC-CCH-HHHHHHHHHH
Confidence 4556666555 6999999999999999999876555432 2233457774 45653 332 3344444443
No 280
>PRK08841 aspartate kinase; Validated
Probab=60.93 E-value=64 Score=32.37 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=59.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCc
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEG 260 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~ 260 (372)
+.+.|++.+ +.+.++.+.|+++|+++..-. +.... -.|.|.. ...+.++..+...+ .....-
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~--~~~~v~~---------~~~~~~~~~~~~~i-~~~~~~ 318 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADR--AQIVIKQ---------DACAKLKLVFDDKI-RNSESV 318 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCc--EEEEECH---------HHHHHHHHhCcccE-EEeCCE
Confidence 455666644 357899999999999987542 22221 1355531 12233321111001 012345
Q ss_pred eEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 017375 261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
..+.+.|...||+.+++.++|++.||+|....
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 78999999999999999999999999995544
No 281
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.50 E-value=20 Score=24.67 Aligned_cols=32 Identities=6% Similarity=0.157 Sum_probs=26.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 017375 262 KLELCTT---DRVGLLSNVTRIFRENSLTVTRAEV 293 (372)
Q Consensus 262 ~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i 293 (372)
.|++.+. +++|++++|...|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999977654
No 282
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=60.29 E-value=91 Score=36.94 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=102.1
Q ss_pred CCCEEEEEecC--CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEeeCCCCCCCCHH
Q 017375 168 QRPNVNVVNCY--DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-----PEAYQEYFIRHIDGSPVKSDA 240 (372)
Q Consensus 168 ~~~~V~i~~~~--~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-----~~~~d~F~V~~~~g~~~~~~~ 240 (372)
.+..+.+.... .++...+.++.+.++..|+++.-+|..+|+.|.+.+-+... ...+..|++..+.+......+
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 34556665332 34678999999999999999999999999999998766532 356777999887776555545
Q ss_pred HHHHHHHHHHHHHhccCCCc----eEEE-EEeCCCcchHHHHHHHHHhCCceEEEEEEee-cC------CeeeeEEEEE-
Q 017375 241 ERERVIQCLKAAIERRVSEG----LKLE-LCTTDRVGLLSNVTRIFRENSLTVTRAEVAT-KS------GKAVNTFYVG- 307 (372)
Q Consensus 241 ~~e~l~~~L~~~L~~r~~~~----t~le-v~~~DrpGlL~~It~~L~~~gi~I~~a~i~T-~g------~~~~d~F~v~- 307 (372)
.++.+++.+..+..++.... .++. =-+--..-+|-..++.|.+.|+......|.. .- ..-.+.|+.+
T Consensus 553 ~~~~~~~a~~~v~~g~~e~D~~n~Lvl~agL~wrev~lLRA~~~Yl~Q~~~~~s~~~i~~~l~~~p~i~~~L~~lF~~rf 632 (1528)
T PF05088_consen 553 IRERFEEAFEAVWNGRAENDGFNRLVLSAGLTWREVALLRAYARYLRQIGFPFSQEYIEETLLAHPEIARLLVELFEARF 632 (1528)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777766553321 1111 0112234578888888888887654444421 11 1123445543
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhhhccc
Q 017375 308 GASGYPVDAKIIDSIRQSIGQTILKVK 334 (372)
Q Consensus 308 ~~~g~~~~~~~~~~l~~~l~~~~~~~~ 334 (372)
++..........+.+++.|.+.+-.|.
T Consensus 633 ~P~~~~~~~~~~~~~~~~i~~~l~~V~ 659 (1528)
T PF05088_consen 633 DPDSQEAREAAQEELEEEIEEALDEVA 659 (1528)
T ss_pred CCCccccchhHHHHHHHHHHHHHhhcC
Confidence 221222223345566666665554433
No 283
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.88 E-value=1.1e+02 Score=26.49 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC--
Q 017375 194 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT-- 268 (372)
Q Consensus 194 GLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~-- 268 (372)
.+..-+-.++..+|+.+.+..+...+ ++++-+| +..+ | .++- +.++.+-+.+...|+. ..+..|.|||+++
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~-g-~v~l-ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGl 84 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY-IDKE-G-GVTL-DDCADVSRAISALLDVEDPIEGAYFLEVSSPGL 84 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCC-C-CCCH-HHHHHHHHHHHHHhccCCcccccEEEEeeCCCC
Confidence 45566777889999999999999988 5777655 4333 3 3333 4688888899888873 2456899999966
Q ss_pred CCcchHHHHHHHHHhCCc
Q 017375 269 DRVGLLSNVTRIFRENSL 286 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi 286 (372)
|||=. ....+-.-.|-
T Consensus 85 dRpL~--~~~~f~r~~G~ 100 (153)
T COG0779 85 DRPLK--TAEHFARFIGE 100 (153)
T ss_pred CCCcC--CHHHHHHhcCc
Confidence 67643 33333333443
No 284
>PRK12483 threonine dehydratase; Reviewed
Probab=58.88 E-value=81 Score=33.00 Aligned_cols=64 Identities=6% Similarity=0.046 Sum_probs=44.1
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHH-HHHHHHHHH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKII-DSIRQSIGQ 328 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~-~~l~~~l~~ 328 (372)
+...+.|.-+||||-|.++++.|... ||....-.....+...++......+ .++. ++|.++|.+
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~~i~~~l~~ 408 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP----RHDPRAQLLASLRA 408 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC----hhhhHHHHHHHHHH
Confidence 45889999999999999999999998 7776665544434444444433222 3354 677777765
No 285
>PRK14631 hypothetical protein; Provisional
Probab=58.88 E-value=1.3e+02 Score=26.63 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeC----------------CCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375 194 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHI----------------DGSPVKSDAERERVIQCLKAAIER- 255 (372)
Q Consensus 194 GLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~----------------~g~~~~~~~~~e~l~~~L~~~L~~- 255 (372)
-+-..+.-++..+|+.+.+..+...+ .+.+-+| |..+ .+..++- +.++.+-+.+..+|+.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~-ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIY-IDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEE-EecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhccc
Confidence 35556778899999999999999876 4555444 4322 1223544 4788899999998874
Q ss_pred -cCCCceEEEEEeCCCcchHHHHHHHHHhCCceE
Q 017375 256 -RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTV 288 (372)
Q Consensus 256 -r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I 288 (372)
-.+..|.|||+++.--.-|.....+-+-.|=.|
T Consensus 87 d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 87 DPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred ccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 356789999997744444666777666666443
No 286
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=58.31 E-value=66 Score=38.01 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec---CC--ceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 44 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NT--RAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 44 ~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~---~~--~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
..++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+.. ++ ..+.-|.+..+ .+..+...+.++.+++.+..
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999987772 23 34567888873 45445444566788888887
Q ss_pred hhcCCC
Q 017375 119 VLKGSN 124 (372)
Q Consensus 119 ~L~~~~ 124 (372)
+..+..
T Consensus 564 v~~g~~ 569 (1528)
T PF05088_consen 564 VWNGRA 569 (1528)
T ss_pred HhcCCC
Confidence 776654
No 287
>PRK09084 aspartate kinase III; Validated
Probab=58.28 E-value=2.1e+02 Score=29.16 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375 46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96 (372)
Q Consensus 46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~ 96 (372)
.+...|+|.+. +.+|.++++..+|.++|++|.--. + .+ .--.|.|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-se-~sIs~~i~~ 353 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-SE-VSVSLTLDT 353 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-cC-cEEEEEEec
Confidence 35567777654 688999999999999999998543 2 22 234676754
No 288
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=57.39 E-value=27 Score=34.85 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.|+|.+.||.||..++-..|...+|++...+|...| .-|+--+ .++.+..++|+.+|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~-----~IYln~p---~l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-----RIYLNFP---ELEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC-----eEEEecc---ccCHHHHHHHHHHHhc
Confidence 489999999999999999999999999999984333 3455211 2334456666666554
No 289
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.08 E-value=64 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=28.2
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 017375 262 KLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVAT 295 (372)
Q Consensus 262 ~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T 295 (372)
.+.+.|. ++||++++|...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666664 789999999999999999999886544
No 290
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=54.67 E-value=1.4e+02 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEE
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFH 212 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~ 212 (372)
...+.|.-+|+||-|..+-.=|+..|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 3567888999999999999999999999986
No 291
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=54.53 E-value=2.6e+02 Score=28.69 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCeEEEEEEecC---ccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375 46 MDHTAIELTGSD---RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG 122 (372)
Q Consensus 46 ~~~t~i~v~~~D---rpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~ 122 (372)
.+.+.|+|.... .+|.++++.+.|+++|+||.- |.+.-....-.|.|... + ..+....|.+.+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~~~~~~i~~~v~~~-------~---~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQSISEVSISFTVPES-------D---APRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEeccCCCeEEEEEchh-------h---HHHHHHHHHHHHhh
Confidence 466777777543 459999999999999999973 22221112256767541 1 12222333332221
Q ss_pred CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEE---ecCCccHHHHH
Q 017375 123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT---SKDRPKLVFDT 199 (372)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~---~~DrpGLL~~i 199 (372)
... .|.++ .+...|.+. .+..||..+++
T Consensus 373 ~~~---------------------------------------------~v~~~----~~~a~vsiVG~gm~~~~gvaa~~ 403 (447)
T COG0527 373 LLA---------------------------------------------EVEVE----EGLALVSIVGAGMRSNPGVAARI 403 (447)
T ss_pred hcc---------------------------------------------eEEee----CCeeEEEEEccccccCcCHHHHH
Confidence 110 11111 123455555 45689999999
Q ss_pred HHHHHhCCceEEEEE
Q 017375 200 VCTLTDMQYVVFHAN 214 (372)
Q Consensus 200 ~~~L~~~glnI~~A~ 214 (372)
..+|++.|+||....
T Consensus 404 f~aL~~~~ini~~is 418 (447)
T COG0527 404 FQALAEENINIIMIS 418 (447)
T ss_pred HHHHHhCCCcEEEEE
Confidence 999999999999866
No 292
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=54.02 E-value=1e+02 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.028 Sum_probs=31.3
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW 82 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~ 82 (372)
......+.+.-|||||-|.+++..+...+.||..-+-.
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 45677899999999999999999777777799955443
No 293
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=52.78 E-value=2.6e+02 Score=28.28 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=28.5
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEE
Q 017375 181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHAN 214 (372)
Q Consensus 181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~ 214 (372)
+...|.|.+ .+.||+++++..+|++.|+||....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 466777764 4789999999999999999997654
No 294
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.74 E-value=76 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.7
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 017375 184 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDA 217 (372)
Q Consensus 184 ~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T 217 (372)
.|.+.+. +.+|+++++.+.|++.|++|......+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 789999999999999999997665433
No 295
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=52.29 E-value=42 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=28.4
Q ss_pred eEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 261 LKLELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 261 t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
+.|++.+ .+.+|+++++.++|++.++++....-.+.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~ 40 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASS 40 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC
Confidence 3566643 37899999999999999999988765433
No 296
>PRK08639 threonine dehydratase; Validated
Probab=52.17 E-value=1.4e+02 Score=30.18 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=43.7
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee-cCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT-KSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T-~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
.+...+.+.-+||||-|.++.+.+...+-||...+-.- .+.....++..-... ++++.+++.+.|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~----~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK----DAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 45689999999999999999996665555998876432 222222233222222 24577888888765
No 297
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.11 E-value=75 Score=21.78 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=25.9
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375 262 KLELCT---TDRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 262 ~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
.|.+.+ .+.||++.++...|++.++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 456654 3679999999999999999998876
No 298
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=51.36 E-value=1.3e+02 Score=31.16 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=45.0
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ 328 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~ 328 (372)
+...+.|.-+||||-|.+++++|... ||...+=.-.+.....+|...... +++++++|.+.|.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~----~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLS----NPQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 46889999999999999999999984 666665443333344455543322 34677888888765
No 299
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=51.18 E-value=23 Score=36.85 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=33.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG 219 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g 219 (372)
.++|.|.||.|+..++...|..+++|+....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999987653
No 300
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=50.67 E-value=36 Score=23.46 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=25.8
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375 262 KLELCT---TDRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 262 ~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
.|.+.+ .+.||++.++.+.|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4779999999999999999998776
No 301
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=50.63 E-value=83 Score=32.07 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=43.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.+.|.+..+|+||-|+++-.+|+.+|+|+.+-.-.-.. ....-.|+|. .+|.. . ..+..+.+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc--c-HHHHHHHHHHHH
Confidence 46777777999999999999999999999875554332 2223347774 34543 2 244555555544
No 302
>PRK00907 hypothetical protein; Provisional
Probab=50.31 E-value=72 Score=25.19 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=46.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEE----EeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI----DAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I----~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.+-+.|.|.+++++...|..++..+.-.....++ ++.|.+..-++.|+- ++.+.++.|-++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhh
Confidence 4689999999999999999999999876666666 445566666666653 233466777776653
No 303
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=50.19 E-value=29 Score=29.31 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=39.8
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe-ecCCeeeeEEEEE
Q 017375 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKSGKAVNTFYVG 307 (372)
Q Consensus 260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~-T~g~~~~d~F~v~ 307 (372)
-..+.+.-.||.|.|+++-.++++.++||...+=+ ...++|.-+..+.
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 47889999999999999999999999999887644 2367777777773
No 304
>PRK08639 threonine dehydratase; Validated
Probab=49.74 E-value=1.2e+02 Score=30.62 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=42.9
Q ss_pred CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375 45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118 (372)
Q Consensus 45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~ 118 (372)
+.....+.+.-|||||-|.+++..+...+.||..-+-.- .+.....++..-. ..+++..++|.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 456788999999999999999996776666998765432 1111112222222 1233455677777664
No 305
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.48 E-value=94 Score=22.18 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=27.0
Q ss_pred EEEEEec--CCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 017375 184 VVTITSK--DRPKLVFDTVCTLTDMQYVVFHANIDAEG 219 (372)
Q Consensus 184 ~v~V~~~--DrpGLL~~i~~~L~~~glnI~~A~I~T~g 219 (372)
.|.+.+. ..+|++.++..+|++.|++|......+.+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 4555554 46899999999999999999875554443
No 306
>PRK14635 hypothetical protein; Provisional
Probab=49.35 E-value=1.5e+02 Score=25.82 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=60.4
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCC--CCCCCHHHHHHHHHHHHHHHhcc-CCCceEEEEEeC
Q 017375 192 RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG--SPVKSDAERERVIQCLKAAIERR-VSEGLKLELCTT 268 (372)
Q Consensus 192 rpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g--~~~~~~~~~e~l~~~L~~~L~~r-~~~~t~lev~~~ 268 (372)
..-+-..+..++. .|+.+.+..+...++.-.-..+|...++ ..++- +.++.+-+.+.+.|+.. ....|.|||+++
T Consensus 5 ~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~l-ddC~~vSr~is~~LD~~d~~~~Y~LEVSSP 82 (162)
T PRK14635 5 EEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSL-LECEQVSRKLKEELERISPDLDFTLKVSSA 82 (162)
T ss_pred HHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCH-HHHHHHHHHHHHHhCCCCCCCCeEEEEcCC
Confidence 3334445566664 6999999999988755333344532111 12444 47888999999888742 235899999976
Q ss_pred CCcchHHHHHHHHHhCCceEE
Q 017375 269 DRVGLLSNVTRIFRENSLTVT 289 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi~I~ 289 (372)
.----|..--..-+-.|-.+.
T Consensus 83 GldRpL~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 83 GAERKLRLPEDLDRFRGIPVR 103 (162)
T ss_pred CCCCcCCCHHHHHHhCCCEEE
Confidence 433335555666666665553
No 307
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=48.39 E-value=70 Score=32.82 Aligned_cols=54 Identities=4% Similarity=0.038 Sum_probs=37.9
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEE-EEEEEeeCCCC
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAY-QEYFIRHIDGS 234 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~-d~F~V~~~~g~ 234 (372)
...+.|.+..+|+||-|+++-++|+.+|+|+.+-.-.-.. .... -.|+|. .+|.
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~ 84 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELF 84 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcC
Confidence 3456777777999999999999999999999875554433 2222 346664 3454
No 308
>PRK14646 hypothetical protein; Provisional
Probab=47.63 E-value=1.9e+02 Score=25.07 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 273 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 273 lL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
+..-+..++.++|+.+..++....|....=..||....|..++-+.++.+-+++...+ .+ .+|.+.+ +||+.+
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~L-D~-~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEI-EN-SNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHh-Cc-CCCCCCCeEEEEcCCCCC
Confidence 4456778889999999999999988877778888444455677778999999988865 43 3455554 367666
Q ss_pred CCccc
Q 017375 348 PTRFL 352 (372)
Q Consensus 348 ~~~~~ 352 (372)
+|=+.
T Consensus 87 RpL~~ 91 (155)
T PRK14646 87 DELTS 91 (155)
T ss_pred CcCCC
Confidence 66443
No 309
>PRK09224 threonine dehydratase; Reviewed
Probab=46.67 E-value=1.6e+02 Score=30.55 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHH-HHHHHHHHHH
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKI-IDSIRQSIGQ 328 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~-~~~l~~~l~~ 328 (372)
+...+.|.-+||||-|.++++.|. +-||...+-.-.+.....+|......+ .++ .++|.+.|.+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~----~~~~~~~i~~~L~~ 391 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSR----GQEERAEIIAQLRA 391 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCC----hhhHHHHHHHHHHH
Confidence 468899999999999999999999 577776664444444444555433222 233 6777777754
No 310
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.49 E-value=33 Score=26.11 Aligned_cols=38 Identities=3% Similarity=-0.081 Sum_probs=28.4
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 017375 189 SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRH 230 (372)
Q Consensus 189 ~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~ 230 (372)
.++.||.++++..+|+++|+||..-. + ++ .--.|.|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 46889999999999999999998753 2 22 334466643
No 311
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.10 E-value=1e+02 Score=21.49 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.1
Q ss_pred EEEEEec---CccchHHHHHHHHHhcCceEEEEEE
Q 017375 50 AIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEV 81 (372)
Q Consensus 50 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I 81 (372)
.|.+++. ++||+.+++...|++.|++|.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 6799999999999999999985544
No 312
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=45.79 E-value=1.2e+02 Score=22.25 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred EEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEE
Q 017375 184 VVTITS---KDRPKLVFDTVCTLTDMQYVVFHANID 216 (372)
Q Consensus 184 ~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~ 216 (372)
.|++.+ .+.+|+++++.++|++.++++......
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456643 478999999999999999999765544
No 313
>PRK14641 hypothetical protein; Provisional
Probab=45.59 E-value=2e+02 Score=25.47 Aligned_cols=81 Identities=7% Similarity=0.077 Sum_probs=53.1
Q ss_pred HhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--C----CCceEEEEEeCCCcchHHH
Q 017375 204 TDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--V----SEGLKLELCTTDRVGLLSN 276 (372)
Q Consensus 204 ~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~----~~~t~lev~~~DrpGlL~~ 276 (372)
..+|+.+.+..+...+ ++.+-+| |. .+|. ++- +.++.+-+.+..+|+.. . ...|.|||+++.----|..
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~-ID-~~~g-v~l-DdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~ 95 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVL-LD-ADTG-IRI-DQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIIL 95 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEE-Ee-CCCC-CCH-HHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCC
Confidence 4899999999999876 4555444 53 3333 444 47888999999988743 2 2589999997643333555
Q ss_pred HHHHHHhCCceE
Q 017375 277 VTRIFRENSLTV 288 (372)
Q Consensus 277 It~~L~~~gi~I 288 (372)
.-++-+-.|=.|
T Consensus 96 ~~~f~r~~G~~V 107 (173)
T PRK14641 96 PRQYGRHVGRLL 107 (173)
T ss_pred HHHHHHhCCCEE
Confidence 555555555433
No 314
>PRK14644 hypothetical protein; Provisional
Probab=45.16 E-value=1.9e+02 Score=24.47 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=53.0
Q ss_pred HHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC--CCcchH
Q 017375 200 VCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT--DRVGLL 274 (372)
Q Consensus 200 ~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~--DrpGlL 274 (372)
..++..+|+.+.+......+ .+++-+| |. .. +- +.++.+-+.|..+|+. ..+..|.|||+++ ||| |
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~LrV~-Id-k~----~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp--L 75 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLEVI-LN-SR----DL-KDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD--Y 75 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEEEE-EC-CC----CH-HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC--C
Confidence 35688999999999999876 4555444 52 11 22 4788888888888874 3567899999955 888 3
Q ss_pred HHHHHHHHhCCc
Q 017375 275 SNVTRIFRENSL 286 (372)
Q Consensus 275 ~~It~~L~~~gi 286 (372)
.. .+.-+-.|=
T Consensus 76 ~~-~~f~r~~G~ 86 (136)
T PRK14644 76 ET-DELENHIGE 86 (136)
T ss_pred CH-HHHHHhCCC
Confidence 33 354444453
No 315
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=44.01 E-value=1e+02 Score=20.89 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=25.7
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceEEEEEE
Q 017375 184 VVTITSK---DRPKLVFDTVCTLTDMQYVVFHANI 215 (372)
Q Consensus 184 ~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I 215 (372)
.|++.+. +++|+++++...|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566544 8899999999999999999976544
No 316
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=43.86 E-value=39 Score=23.67 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=27.4
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 017375 190 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRH 230 (372)
Q Consensus 190 ~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~ 230 (372)
.+++|+.+++.++|+++|+++..- .| +. .--.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEeh
Confidence 478999999999999999999875 23 22 333466643
No 317
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.90 E-value=1.2e+02 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=30.9
Q ss_pred EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375 262 KLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV 306 (372)
Q Consensus 262 ~lev~~~--DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v 306 (372)
.+.+.|. ..+|++.++.++|++.|++|.... +|...... |.|
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~---~g~s~~sis~~v 47 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMIS---QGASKVNISLIV 47 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEE---ecCccceEEEEE
Confidence 4555554 468999999999999999998876 44445554 555
No 318
>PRK14634 hypothetical protein; Provisional
Probab=40.19 E-value=2.5e+02 Score=24.32 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 273 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 273 lL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
+-.-+..++.++|+.+..+++...|....=..||....|..++-+.++.+-++|...+ .+ ..|.+.+ ++|+.+
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~L-D~-~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEAL-EA-SQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHh-cc-cccCCCCeEEEEeCCCCC
Confidence 3445666788999999999998887776667888555675677778999999988766 33 2344433 267666
Q ss_pred CCccc
Q 017375 348 PTRFL 352 (372)
Q Consensus 348 ~~~~~ 352 (372)
+|=+.
T Consensus 87 RpL~~ 91 (155)
T PRK14634 87 DQLSS 91 (155)
T ss_pred CcCCC
Confidence 66444
No 319
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=40.10 E-value=1.2e+02 Score=20.68 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=29.3
Q ss_pred EEEEe---cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375 51 IELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96 (372)
Q Consensus 51 i~v~~---~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~ 96 (372)
|+|.+ .+.+|+++++...|...|+++..-. +. + .--.|.|.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~--~s-~-~~is~~v~~ 47 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TS-E-IKISCLIDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE--cc-C-ceEEEEEeH
Confidence 55554 4678999999999999999996554 22 2 223466654
No 320
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=38.11 E-value=63 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375 269 DRVGLLSNVTRIFRENSLTVTRAEVATK 296 (372)
Q Consensus 269 DrpGlL~~It~~L~~~gi~I~~a~i~T~ 296 (372)
|-+|+|+.|.+.|++.||.|.-. +|+
T Consensus 75 gltGilasV~~pLsd~gigIFav--Sty 100 (128)
T COG3603 75 GLTGILASVSQPLSDNGIGIFAV--STY 100 (128)
T ss_pred CcchhhhhhhhhHhhCCccEEEE--Eec
Confidence 67899999999999999999653 454
No 321
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=37.91 E-value=74 Score=23.07 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=25.6
Q ss_pred EEEEEeC-CCcchHHHHHHHHHhCCceEEEEE
Q 017375 262 KLELCTT-DRVGLLSNVTRIFRENSLTVTRAE 292 (372)
Q Consensus 262 ~lev~~~-DrpGlL~~It~~L~~~gi~I~~a~ 292 (372)
.+.|.+. +.||.+++|-+.|++.|++|....
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~ 34 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLIN 34 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 4555544 559999999999999999999993
No 322
>PRK14636 hypothetical protein; Provisional
Probab=36.79 E-value=3e+02 Score=24.36 Aligned_cols=78 Identities=6% Similarity=-0.012 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 273 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 273 lL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
+-.-+..++.++|+.+..+.+...+....=..||....|..++-+.++.+-++|...+ .+ .+|.+.+ +||+.+
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~L-D~-~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVF-DE-LDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHh-cc-CcCCCCCeEEEEeCCCCC
Confidence 4556778899999999999998887766667777544445677778999999988866 32 3444433 266666
Q ss_pred CCccc
Q 017375 348 PTRFL 352 (372)
Q Consensus 348 ~~~~~ 352 (372)
+|=+.
T Consensus 85 RpL~~ 89 (176)
T PRK14636 85 RPLTR 89 (176)
T ss_pred CCCCC
Confidence 66444
No 323
>PRK00907 hypothetical protein; Provisional
Probab=36.48 E-value=1.5e+02 Score=23.37 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=44.9
Q ss_pred eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe----cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT----HNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117 (372)
Q Consensus 48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T----~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~ 117 (372)
.+-|.|.|.+.++|...|..++..+.-......+.. .|.+..-++.|.- ++.++++.|=+.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-------ts~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-------ESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 478899999999999999999999988777777754 3444445666654 13355566655554
No 324
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.12 E-value=1.1e+02 Score=23.14 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375 268 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330 (372)
Q Consensus 268 ~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~ 330 (372)
.-..|++..+-++|.++|+++++.- ...|.|-|.- +...++++.++++.++|...+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii-~~~~~~~~~~~~i~~~i~~~~ 67 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMP------SGIDDISIII-RDNQLTDEKEQKILAEIKEEL 67 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEE-EccccchhhHHHHHHHHHHhc
Confidence 3458999999999999999999864 3456666642 344555545555666655533
No 325
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.06 E-value=1.6e+02 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred EEEEEec---CccchHHHHHHHHHhcCceE
Q 017375 50 AIELTGS---DRPGLLSEVSAVLTHLKCNV 76 (372)
Q Consensus 50 ~i~v~~~---DrpGLl~~i~~~l~~~glnI 76 (372)
.|.+++. +.||+++++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4666765 67999999999999987666
No 326
>PRK14642 hypothetical protein; Provisional
Probab=34.87 E-value=3.5e+02 Score=24.52 Aligned_cols=88 Identities=18% Similarity=0.034 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCC-----------CCCCCCHHHHHHHHHHHHHHHhccCCCceEE
Q 017375 195 LVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID-----------GSPVKSDAERERVIQCLKAAIERRVSEGLKL 263 (372)
Q Consensus 195 LL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~-----------g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~l 263 (372)
|-..+..++..+|+.+.+..+... + .+-+ +|..++ +..++- +.++.+-+.|..+|+......+.|
T Consensus 3 l~~liepvv~~lG~eLvdve~~~~-~-~LrV-~ID~~~~~~~~~~~~~~~~gVti-dDC~~vSR~Is~~LDve~~~y~~L 78 (197)
T PRK14642 3 LQQIVEQTVTGLGYDLVEIERSAG-G-LLRV-TIDLPWVPPTEGAPVGPEQFVTV-EDCEKVTRQLQFALEVDGVDYKRL 78 (197)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecC-C-EEEE-EEecCccccccccccccCCCccH-HHHHHHHHHHHHHhcccCccccEE
Confidence 445677889999999999997643 3 3333 343221 123444 478888899988887433444589
Q ss_pred EEEeCCCcchHHHHHHHHHhCCc
Q 017375 264 ELCTTDRVGLLSNVTRIFRENSL 286 (372)
Q Consensus 264 ev~~~DrpGlL~~It~~L~~~gi 286 (372)
||+++.----|...-++.+-.|=
T Consensus 79 EVSSPGldRPLk~~~df~rfiG~ 101 (197)
T PRK14642 79 EVSSPGIDRPLRHEQDFERFAGE 101 (197)
T ss_pred EEeCCCCCCCCCCHHHHHHhCCC
Confidence 99976333335555555555453
No 327
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.41 E-value=1.7e+02 Score=20.76 Aligned_cols=27 Identities=4% Similarity=-0.007 Sum_probs=21.9
Q ss_pred EEEEEec---CCccHHHHHHHHHHhCCceE
Q 017375 184 VVTITSK---DRPKLVFDTVCTLTDMQYVV 210 (372)
Q Consensus 184 ~v~V~~~---DrpGLL~~i~~~L~~~glnI 210 (372)
.|.+.+. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 67999999999999987776
No 328
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=33.05 E-value=1.6e+02 Score=22.68 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=36.3
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCC
Q 017375 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPV 236 (372)
Q Consensus 180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~ 236 (372)
.....+.+...| +..+...|..+|+++........++. ..|++.||+|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 345567777887 67777888999999886543332222 4699999999765
No 329
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.85 E-value=1.6e+02 Score=20.00 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=24.7
Q ss_pred EEEEEe---cCccchHHHHHHHHHhcCceEEEEE
Q 017375 50 AIELTG---SDRPGLLSEVSAVLTHLKCNVVSAE 80 (372)
Q Consensus 50 ~i~v~~---~DrpGLl~~i~~~l~~~glnI~~A~ 80 (372)
.|+|.+ .+.+|+++++...|.++|+++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4679999999999999999997543
No 330
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=32.69 E-value=74 Score=23.06 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=24.4
Q ss_pred EEEEEe-cCCccHHHHHHHHHHhCCceEEEE
Q 017375 184 VVTITS-KDRPKLVFDTVCTLTDMQYVVFHA 213 (372)
Q Consensus 184 ~v~V~~-~DrpGLL~~i~~~L~~~glnI~~A 213 (372)
.|+|.+ ++.||.++++.+.|+++|+||-.-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 344443 456999999999999999999887
No 331
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=32.47 E-value=2.2e+02 Score=32.21 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=36.4
Q ss_pred cCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEec
Q 017375 56 SDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD 96 (372)
Q Consensus 56 ~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~ 96 (372)
+...|+|+.++.++..+||.+..+.+-+. +|..+-.|||..
T Consensus 241 ~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~ 282 (1002)
T PTZ00324 241 YYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRG 282 (1002)
T ss_pred CcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEec
Confidence 44559999999999999999999999995 777788999987
No 332
>PLN02550 threonine dehydratase
Probab=31.27 E-value=6.7e+02 Score=26.74 Aligned_cols=125 Identities=13% Similarity=0.191 Sum_probs=68.1
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK 125 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~ 125 (372)
....+.|.-+||||-|.+++.+|... ||.+-.-.-. -+.+.-.+-|.- .+++..++|.+.|.+. + ..
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~l~~~--g-~~ 483 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-------HTEQELQALKKRMESA--Q-LR 483 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-------CCHHHHHHHHHHHHHC--C-CC
Confidence 44678899999999999999999986 7765443332 222222222321 1345566776666542 2 11
Q ss_pred CCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHh
Q 017375 126 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTD 205 (372)
Q Consensus 126 ~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~ 205 (372)
. ..+...... ..|++-++ | ....+ ..--.+.+.-|.|||-|..++.+|..
T Consensus 484 ~----~~l~~~~~~-~~~LR~v~-------------g-----~ra~~-------~~E~l~~v~fPErpGAl~~Fl~~lg~ 533 (591)
T PLN02550 484 T----VNLTSNDLV-KDHLRYLM-------------G-----GRAIV-------KDELLYRFVFPERPGALMKFLDAFSP 533 (591)
T ss_pred e----EeCCCChHH-hhhhhhee-------------c-----ccccc-------CceEEEEEEecCcCCHHHHHHHhhCC
Confidence 1 112110000 12332110 0 00111 12347788889999999999998875
Q ss_pred CCceEEEEE
Q 017375 206 MQYVVFHAN 214 (372)
Q Consensus 206 ~glnI~~A~ 214 (372)
. .||...+
T Consensus 534 ~-~nITeF~ 541 (591)
T PLN02550 534 R-WNISLFH 541 (591)
T ss_pred C-CceeeEE
Confidence 2 4444433
No 333
>PRK14630 hypothetical protein; Provisional
Probab=29.56 E-value=3.6e+02 Score=22.99 Aligned_cols=77 Identities=3% Similarity=-0.057 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 273 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 273 lL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
+-.-+..++.++|+.+..+.....|....=..||....| ++-+.++.+-+++...+ . +|.+.+ ++|+.+
T Consensus 10 i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~idDC~~vSr~i~~~l-d---~~i~~~Y~LEVSSPGld 83 (143)
T PRK14630 10 VYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGVDTLCDLHKMILLIL-E---AVLKYNFSLEISTPGIN 83 (143)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHh-c---ccCCCCeEEEEeCCCCC
Confidence 445577789999999999998887776666778854444 66667888888887655 2 344433 267777
Q ss_pred CCcccccc
Q 017375 348 PTRFLFGG 355 (372)
Q Consensus 348 ~~~~~~~~ 355 (372)
+|=+....
T Consensus 84 RpL~~~~d 91 (143)
T PRK14630 84 RKIKSDRE 91 (143)
T ss_pred CcCCCHHH
Confidence 77554433
No 334
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=29.12 E-value=3.6e+02 Score=30.62 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=47.9
Q ss_pred CCEEEEEecC-CCCeEEEEE---EecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375 169 RPNVNVVNCY-DKDYSVVTI---TSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS 234 (372)
Q Consensus 169 ~~~V~i~~~~-~~~~t~v~V---~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~ 234 (372)
.|.+.+.... ......+.+ ..+...|+|..++.++..+|+.+..+.+.+.. |..+-+|||+...+.
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 3555554433 223334444 45667889999999999999999999999974 677779999866554
No 335
>PRK14638 hypothetical protein; Provisional
Probab=28.60 E-value=3.8e+02 Score=23.01 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCCCC
Q 017375 275 SNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDSPT 349 (372)
Q Consensus 275 ~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~~~ 349 (372)
.-+..++.++|+.+...+....|..-.=..|| |..+..++-+.++.+.+.|...+ .+. +|.+.+ ++|+.++|
T Consensus 12 ~~~~~i~~~~G~elvdve~~~~~~~~~lrV~I-D~~~G~v~lddC~~vSr~is~~L-D~~-d~i~~~Y~LEVSSPGldRp 88 (150)
T PRK14638 12 KEAERIAEEQGLEIFDVQYRRESRGWVLRIII-DNPVGYVSVRDCELFSREIERFL-DRE-DLIEHSYTLEVSSPGLDRP 88 (150)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEEEE-ECCCCCcCHHHHHHHHHHHHHHh-ccc-cccCCceEEEEeCCCCCCC
Confidence 34566788999999999999887766667777 44444477778999999988866 332 333332 26666666
Q ss_pred ccccccc
Q 017375 350 RFLFGGL 356 (372)
Q Consensus 350 ~~~~~~~ 356 (372)
=+.....
T Consensus 89 L~~~~~f 95 (150)
T PRK14638 89 LRGPKDY 95 (150)
T ss_pred CCCHHHH
Confidence 5444333
No 336
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=27.46 E-value=3.5e+02 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375 277 VTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 331 (372)
Q Consensus 277 It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~ 331 (372)
|...+..+|+.+..+++...++...=..+|.. .+. ++-++++.+-+++...+-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~lddc~~~sr~i~~~LD 54 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSLDDCEKVSRAISALLD 54 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----HHHHHHHHHHHGGGTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCHHHHHHHHHHHHHHHc
Confidence 46778899999999999999887666666643 444 777889999999888773
No 337
>PRK02047 hypothetical protein; Provisional
Probab=26.57 E-value=3.1e+02 Score=21.37 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=37.6
Q ss_pred CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe---cCCc-eEEEEEEe
Q 017375 47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT---HNTR-AAALMQVT 95 (372)
Q Consensus 47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T---~~~~-~~d~F~V~ 95 (372)
..+.+.|.+++.+++...+..++..+...+..+.+.+ .+|+ ..-++.|.
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~ 67 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR 67 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE
Confidence 3588999999999999999999999988877777766 2444 34444444
No 338
>PRK14645 hypothetical protein; Provisional
Probab=25.42 E-value=4.4e+02 Score=22.74 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 273 LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 273 lL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
+-.-+..++.++|+.+..+++...|..-.=..||....|..++-+.++.+-+.|...+ .+ .+|.+.+ ++|+.+
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~L-D~-~d~i~~~Y~LEVSSPGld 88 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAEL-DR-LDPIEGEYRLEVESPGPK 88 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHh-cc-cccCCCceEEEEeCCCCC
Confidence 4455678889999999999998887665556777433466788788999999988766 33 2333322 266666
Q ss_pred CCccccc
Q 017375 348 PTRFLFG 354 (372)
Q Consensus 348 ~~~~~~~ 354 (372)
+|=+...
T Consensus 89 RpL~~~~ 95 (154)
T PRK14645 89 RPLFTAR 95 (154)
T ss_pred CCCCCHH
Confidence 6644433
No 339
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.33 E-value=1.5e+02 Score=22.86 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=34.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCC
Q 017375 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPV 236 (372)
Q Consensus 181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~ 236 (372)
+...+.+...|+..+ ..+...+..+|+.|...-.....++ .|++.||+|..+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 455677777776555 4455556679999876433322243 478999999865
No 340
>PRK02001 hypothetical protein; Validated
Probab=25.12 E-value=4.5e+02 Score=22.69 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCcchHHHHHH
Q 017375 200 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTR 279 (372)
Q Consensus 200 ~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~~DrpGlL~~It~ 279 (372)
..++..+|+.+.+..+... ..+-+ +|....| ++- +.++.+-+.|.+.|+.. +..|.|||+++.----|..--+
T Consensus 12 e~~~~~~g~eLvdv~~~~~--~~lrV-~ID~~~G--v~l-ddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRpL~~~~~ 84 (152)
T PRK02001 12 EELLEGPELFLVDLTISPD--NKIVV-EIDGDEG--VWI-EDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSPLKVPRQ 84 (152)
T ss_pred HhhhhhcCcEEEEEEEEcC--CEEEE-EEECCCC--CCH-HHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCcCCCHHH
Confidence 3456789999999888743 33333 3432233 444 47889999999988742 4789999997633333544445
Q ss_pred HHHhCCceE
Q 017375 280 IFRENSLTV 288 (372)
Q Consensus 280 ~L~~~gi~I 288 (372)
+-+-.|-.|
T Consensus 85 f~r~~G~~v 93 (152)
T PRK02001 85 YKKNIGREL 93 (152)
T ss_pred HHHhCCCEE
Confidence 555555433
No 341
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=24.80 E-value=2.4e+02 Score=21.64 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=36.1
Q ss_pred CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCC
Q 017375 259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 314 (372)
Q Consensus 259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~ 314 (372)
....+.+...| +....+.|.+.|+++........+.. ..||+.|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 45667777777 77788889999999886543322222 5899999999765
No 342
>PRK02047 hypothetical protein; Provisional
Probab=24.71 E-value=3.4e+02 Score=21.16 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=44.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe----eCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA----EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T----~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
.+.+.|.+++.+++...+..++..+...+..+.+.+ .|.+..-+..|.- .+++.+..|-++|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v------~s~eq~~~iY~~L~ 82 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRA------TSREQLDNIYRALT 82 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEE------CCHHHHHHHHHHHh
Confidence 468999999999999999999999977776666644 4555555555542 23346666666654
No 343
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=24.20 E-value=1e+03 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=26.4
Q ss_pred CeEEEEEEe---cCccchHHHHHHHHHhcCceEEEE
Q 017375 47 DHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSA 79 (372)
Q Consensus 47 ~~t~i~v~~---~DrpGLl~~i~~~l~~~glnI~~A 79 (372)
+.+.|+|.+ .+.+|.+++|...|+++|++|.--
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 456677753 468899999999999999999633
No 344
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.39 E-value=71 Score=23.75 Aligned_cols=54 Identities=6% Similarity=0.009 Sum_probs=34.3
Q ss_pred cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375 190 KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251 (372)
Q Consensus 190 ~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~ 251 (372)
.-.||+++++.++|+++|+||..-. + ++ .--.|.+.. . .+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~--~-~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM--E-NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh--h-hcCh-HHHHHHHHHHHH
Confidence 3469999999999999999998753 2 22 333455542 2 2222 155666666654
No 345
>PRK05925 aspartate kinase; Provisional
Probab=22.60 E-value=8.3e+02 Score=24.90 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=65.3
Q ss_pred CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--c-
Q 017375 181 DYSVVTITSK-DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--R- 256 (372)
Q Consensus 181 ~~t~v~V~~~-DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r- 256 (372)
+.+.+++.+. ..+|.++++.+.|.++|++|.... +.. ..-.|.+...+ ... ..++.|.. .+.. +
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~--s~~--~sis~~i~~~~---~~~-~~~~~l~~----~l~~~~~i 366 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM--AQN--LGVYFTIDDDD---ISE-EYPQHLTD----ALSAFGTV 366 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEechh---ccH-HHHHHHHH----HhcCCceE
Confidence 4456666533 257889999999999999996542 222 12345564311 111 12222222 2321 1
Q ss_pred --CCCceEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375 257 --VSEGLKLELCTTD--RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG 307 (372)
Q Consensus 257 --~~~~t~lev~~~D--rpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~ 307 (372)
...-..|.|.|.. ++|+..++..+|++.||+|.... .++. .=.|.|.
T Consensus 367 ~~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~---~s~~-~is~vV~ 417 (440)
T PRK05925 367 SCEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWC---QSDM-ALNLVVN 417 (440)
T ss_pred EEECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEE---CCCc-eEEEEEe
Confidence 1234677777652 37899999999999999996632 2333 2256663
No 346
>PRK14631 hypothetical protein; Provisional
Probab=22.59 E-value=5.4e+02 Score=22.72 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC----------------CCCCCCHHHHHHHHHHHHHhhhcccCCC
Q 017375 274 LSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA----------------SGYPVDAKIIDSIRQSIGQTILKVKGNP 337 (372)
Q Consensus 274 L~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~----------------~g~~~~~~~~~~l~~~l~~~~~~~~~~~ 337 (372)
-.-+.-++..+|+.+..+.+...|..-.=..||... .+..++-+.++.+-++|...+ .+ .+|
T Consensus 11 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~L-D~-~d~ 88 (174)
T PRK14631 11 TDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAML-DV-HDP 88 (174)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHh-cc-ccc
Confidence 345667788999999999999887766666777322 234577778999999988866 33 344
Q ss_pred CCCC-----CCCCCCCCccccccccc
Q 017375 338 EDLK-----SASQDSPTRFLFGGLFK 358 (372)
Q Consensus 338 ~~~~-----~~~~~~~~~~~~~~~~~ 358 (372)
.+.. ++|+.++|=+....+-|
T Consensus 89 i~~~Y~LEVSSPGldRpL~~~~df~r 114 (174)
T PRK14631 89 ISGEYALEVSSPGWDRPFFQLEQLQG 114 (174)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHHHH
Confidence 4433 36777777665444433
No 347
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.10 E-value=1.9e+02 Score=22.31 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=34.1
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCC
Q 017375 184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPV 236 (372)
Q Consensus 184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~ 236 (372)
.+.+...+. +..+...|...|+.+...-....+ ......|++.||+|..+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 444555544 888999999999998765544332 12234588999999865
No 348
>PRK08841 aspartate kinase; Validated
Probab=21.96 E-value=4.4e+02 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCeEEEEEEecCccchHHHHHHHHHhcCceEEE
Q 017375 46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVS 78 (372)
Q Consensus 46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~ 78 (372)
.+...|.+++...||+.+++..+|...|+||+.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 467789999999999999999999999999953
No 349
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=20.69 E-value=3.3e+02 Score=19.47 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=24.8
Q ss_pred EEEEEEecC--CccHHHHHHHHHHhCCceEEEE
Q 017375 183 SVVTITSKD--RPKLVFDTVCTLTDMQYVVFHA 213 (372)
Q Consensus 183 t~v~V~~~D--rpGLL~~i~~~L~~~glnI~~A 213 (372)
..|.+.+.. +||++.++.++|.+.|+++...
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i 35 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAA 35 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEE
Confidence 356666542 6899999999999999999763
No 350
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=20.65 E-value=2.8e+02 Score=20.05 Aligned_cols=33 Identities=9% Similarity=-0.103 Sum_probs=24.2
Q ss_pred HHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCC
Q 017375 200 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID 232 (372)
Q Consensus 200 ~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~ 232 (372)
......+|+.++.=.+.|.+|+.+..+.|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999997654
No 351
>PRK00341 hypothetical protein; Provisional
Probab=20.39 E-value=3.6e+02 Score=21.03 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=42.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe----eCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA----EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK 250 (372)
Q Consensus 183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T----~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~ 250 (372)
+.+.|.|.+.+++...|..++..+. ......+.+ .|.+..-++.|.- .+++.+..+-++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~------~s~~q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA------TDEDQLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHh
Confidence 7899999999999999999998876 766665543 3455555555542 23345666666654
No 352
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=20.36 E-value=2.6e+02 Score=20.26 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375 66 SAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96 (372)
Q Consensus 66 ~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~ 96 (372)
......+|..+..=.|.|.||+.+.++.|..
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~ 32 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPP 32 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-S
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccC
Confidence 3466789999999999999999999999976
No 353
>PRK14643 hypothetical protein; Provisional
Probab=20.30 E-value=5.8e+02 Score=22.25 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc--CCCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCC
Q 017375 275 SNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG--ASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLK-----SASQDS 347 (372)
Q Consensus 275 ~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~--~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 347 (372)
.-+..++..+|+.+..+...+.|..-.=..||.+ ..+..++-+.++.+.+++...+ .+ ..|.+.+ +||+.+
T Consensus 13 ~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~L-D~-~d~i~~~Y~LEVSSPGle 90 (164)
T PRK14643 13 ELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKI-DQ-FIKTSEKYLLEISSSGIE 90 (164)
T ss_pred HHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHh-Cc-cCCCCCCeEEEecCCCCC
Confidence 4456678899999999999999887766788854 1223477778899999888866 33 3444443 367766
Q ss_pred CCcccccc
Q 017375 348 PTRFLFGG 355 (372)
Q Consensus 348 ~~~~~~~~ 355 (372)
+|=+.-..
T Consensus 91 RpL~~~~d 98 (164)
T PRK14643 91 KQIRSQEE 98 (164)
T ss_pred CCCCCHHH
Confidence 66554433
Done!