BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017376
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 43/352 (12%)
Query: 34 VKGLVDAGIDRIPRIFYLPTDCLDKTPVPRDVQYIF-----------PTVDLQGVDKDPI 82
V+ L +GI IP+ + P + L+ + +F PT+DL+ ++ D
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELE------SINDVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 83 Q-RKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFFEQDFELKKEFYTRDIT- 140
+ R+ +E ++KAS G +INHGIP ++E +K+ FF E K+++ T
Sbjct: 61 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 141 KMVGYNSNFDLYSAPAANWRDTILFNMAPNPPKPEE---------MPAACRDIVMEYTKS 191
K+ GY S ++ W D F++A PEE P+ + EY K
Sbjct: 121 KIQGYGSKLANNASGQLEWED-YFFHLA----YPEEKRDLSIWPKTPSDYIEATSEYAKC 175
Query: 192 VMKXXXXXXXXXXXXXXXNPNYL-KGMDCAEGLLLLG--HYYPACPQPELTMGATEHADD 248
+ P+ L K + E LLL +YYP CPQPEL +G H D
Sbjct: 176 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 235
Query: 249 DFVTVLLQDHIGGLQVCYQNHWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANRV 308
+T +L + + GLQ+ Y+ W+ P ++V++IGD L+++SN K+ S HR L N+
Sbjct: 236 SALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE 295
Query: 309 GPRISVASFFSPKRQPSSKL-YGPIKELLSEENPPKYRETTVRDFVLHLHKK 359
RIS A F P P K+ P+ E++S E+P K+ R F H+ K
Sbjct: 296 KVRISWAVFCEP---PKDKIVLKPLPEMVSVESPAKF---PPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 43/352 (12%)
Query: 34 VKGLVDAGIDRIPRIFYLPTDCLDKTPVPRDVQYIF-----------PTVDLQGVDKDPI 82
V+ L +GI IP+ + P + L+ + +F PT+DL+ ++ D
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELE------SINDVFLEEKKEDGPQVPTIDLKNIESDDE 59
Query: 83 Q-RKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFFEQDFELKKEFYTRDIT- 140
+ R+ +E ++KAS G +INHGIP ++E +K+ FF E K+++ T
Sbjct: 60 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 119
Query: 141 KMVGYNSNFDLYSAPAANWRDTILFNMAPNPPKPEE---------MPAACRDIVMEYTKS 191
K+ GY S ++ W D F++A PEE P+ + EY K
Sbjct: 120 KIQGYGSKLANNASGQLEWED-YFFHLA----YPEEKRDLSIWPKTPSDYIEATSEYAKC 174
Query: 192 VMKXXXXXXXXXXXXXXXNPNYL-KGMDCAEGLLLLG--HYYPACPQPELTMGATEHADD 248
+ P+ L K + E LLL +YYP CPQPEL +G H D
Sbjct: 175 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 234
Query: 249 DFVTVLLQDHIGGLQVCYQNHWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANRV 308
+T +L + + GLQ+ Y+ W+ P ++V++IGD L+++SN K+ S HR L N+
Sbjct: 235 SALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE 294
Query: 309 GPRISVASFFSPKRQPSSKL-YGPIKELLSEENPPKYRETTVRDFVLHLHKK 359
RIS A F P P K+ P+ E++S E+P K+ R F H+ K
Sbjct: 295 KVRISWAVFCEP---PKDKIVLKPLPEMVSVESPAKF---PPRTFAQHIEHK 340
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 163/352 (46%), Gaps = 43/352 (12%)
Query: 34 VKGLVDAGIDRIPRIFYLPTDCLDKTPVPRDVQYIF-----------PTVDLQGVDKDPI 82
V+ L +GI IP+ + P + L+ + +F PT+DL+ ++ D
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELE------SINDVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 83 Q-RKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFFEQDFELKKEFYTRDIT- 140
+ R+ +E ++KAS G +INHGIP + E +K+ FF E K+++ T
Sbjct: 61 KIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 141 KMVGYNSNFDLYSAPAANWRDTILFNMAPNPPKPEE---------MPAACRDIVMEYTKS 191
K+ GY S ++ W D F++A PEE P+ + EY K
Sbjct: 121 KIQGYGSKLANNASGQLEWED-YFFHLA----YPEEKRDLSIWPKTPSDYIEATSEYAKC 175
Query: 192 VMKXXXXXXXXXXXXXXXNPNYL-KGMDCAEGLLLLG--HYYPACPQPELTMGATEHADD 248
+ P+ L K + E LLL +YYP CPQPEL +G H D
Sbjct: 176 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDV 235
Query: 249 DFVTVLLQDHIGGLQVCYQNHWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANRV 308
+T +L + + GLQ+ Y+ W+ P ++V +IGD L+++SN K+ S HR L N+
Sbjct: 236 SALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKE 295
Query: 309 GPRISVASFFSPKRQPSSKL-YGPIKELLSEENPPKYRETTVRDFVLHLHKK 359
RIS A F P P K+ P+ E +S E+P K+ R F H+ K
Sbjct: 296 KVRISWAVFCEP---PKDKIVLKPLPEXVSVESPAKF---PPRTFAQHIEHK 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 16/259 (6%)
Query: 69 FPTVDLQGVDKDPIQRKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFFEQDF 128
FP + L V+ ++R E ++ A E GFF+++NHGIP + + +++ + +++
Sbjct: 4 FPIISLDKVNG--VERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 129 ELK-KEFYTRDITKMVGYNSNFDLYSAPAANWRDTILFNMAP--NPPKPEEMPAACRDIV 185
E + KE + V +W T P N + ++ R++
Sbjct: 62 EQRFKELVASKALEGVQA-------EVTDXDWESTFFLKHLPISNISEVPDLDEEYREVX 114
Query: 186 MEYTKSVMKXXXXXXXXXXXXXXXNPNYLKGMDCAEGLLLLG---HYYPACPQPELTMGA 242
++ K + K YLK G YP CP+P+L G
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 243 TEHADDDFVTVLLQD-HIGGLQVCYQNHWIDVPPSPGALVINIGDLLQLISNDKFISAEH 301
H D + +L QD + GLQ+ WIDVPP ++V+N+GD L++I+N K+ S H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 302 RVLANRVGPRISVASFFSP 320
RV+A + G R S+ASF++P
Sbjct: 235 RVIAQKDGARXSLASFYNP 253
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 229 YYPACPQPELTMGATEHADDDFVTVLLQDHIGGLQVCYQN-HWIDVPPSPGALVINIGDL 287
+YP P+ + A H D + +T+LL GGL+V ++ W+ + P PG LVINIGD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 288 LQLISNDKFISAEHRVL----ANRVGPRISVASFFSPKRQPSSKLYGPIKELLSEENPPK 343
L+ ++N+ S HRV+ R PR S F K ++ ++ ENP +
Sbjct: 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKT---LQNCVTAENPDR 291
Query: 344 YRETTVRDFVLH 355
Y E+ D L
Sbjct: 292 YPESITADEFLQ 303
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 37/268 (13%)
Query: 71 TVDLQGVDKDPIQRKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFF----EQ 126
T+D + D K VE +R+ +GF + NH I ++E + + FF +
Sbjct: 6 TIDYRAAD----SAKRFVESLRE----TGFGVLSNHPIDKELVERIYTEWQAFFNSEAKN 57
Query: 127 DFELKKE----FYTRDITKMVGYNSNFDL----YSAPAANWRDTILFNMAPNPPKPEEMP 178
+F +E F+ I++ ++ D+ + P D++ N+ K +
Sbjct: 58 EFXFNRETHDGFFPASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLA 117
Query: 179 AACRDIVMEYTKSVMKXXXXXXXXXXXXXXXNPNYLKGMDCAEGLLLLGHYYPACPQPEL 238
+ + + Y+ +K P + + + LL + HY P E
Sbjct: 118 SELLEWIETYSPDEIKAKFSIPL---------PEXI--ANSHKTLLRILHYPPXTGDEEX 166
Query: 239 -TMGATEHADDDFVTVLLQDHIGGLQVCYQN-HWIDVPPSPGALVINIGDLLQLISNDKF 296
+ A H D + +TVL + GLQV ++ W+DVP G ++INIGD LQ S+ F
Sbjct: 167 GAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYF 226
Query: 297 ISAEHRVL----ANRVGPRISVASFFSP 320
S HRV+ ++ RIS+ F P
Sbjct: 227 PSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 46/261 (17%)
Query: 80 DPIQRKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFF-----EQDFELKKEF 134
D + + +++ AS +GFF +NHGI V + L + + F E+ ++L
Sbjct: 21 DQAAKMRVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEFHMSITPEEKWDLAIRA 77
Query: 135 YTRDITKMV--GYNSNFDLYSAPAANWRDTILF---NMAPNPPK-------------PEE 176
Y ++ V GY S P ++ + N P+ P+ P+E
Sbjct: 78 YNKEHQDQVRAGY-----YLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDE 132
Query: 177 MPA-ACRDIVMEYTKSVMKXXXXXXXXXXXXXXXNPNYL----KGMDCAEGLLLLGHYYP 231
+D +Y V N+ K D ++L+ + Y
Sbjct: 133 TKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPY- 191
Query: 232 ACPQPELTMGATE---------HADDDFVTVLLQDHIGGLQVCYQNHWIDVPPSPGALVI 282
P PE + H D +TVL Q ++ LQV + D+ +I
Sbjct: 192 LDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLI 251
Query: 283 NIGDLLQLISNDKFISAEHRV 303
N G + ++N+ + + HRV
Sbjct: 252 NCGSYMAHLTNNYYKAPIHRV 272
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 46/261 (17%)
Query: 80 DPIQRKEIVERVRKASETSGFFQVINHGIPVSILEELKEGVRRFF-----EQDFELKKEF 134
D + + +++ AS +GFF +NHGI V + L + + F E+ ++L
Sbjct: 21 DQAAKMRVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEFHMSITPEEKWDLAIRA 77
Query: 135 YTRDITKMV--GYNSNFDLYSAPAANWRDTILF---NMAPNPPK-------------PEE 176
Y ++ V GY S P ++ + N P+ P+ P+E
Sbjct: 78 YNKEHQDQVRAGY-----YLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDE 132
Query: 177 MPA-ACRDIVMEYTKSVMKXXXXXXXXXXXXXXXNPNYL----KGMDCAEGLLLLGHYYP 231
+D +Y V N+ K D ++L+ + Y
Sbjct: 133 TKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPY- 191
Query: 232 ACPQPELTMGATE---------HADDDFVTVLLQDHIGGLQVCYQNHWIDVPPSPGALVI 282
P PE + H D +TVL Q ++ LQV + D+ +I
Sbjct: 192 LDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLI 251
Query: 283 NIGDLLQLISNDKFISAEHRV 303
N G + ++N+ + + HRV
Sbjct: 252 NCGSYMAHLTNNYYKAPIHRV 272
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 217 MDCAEGLLLLGHYYPACPQ----PELTMGATEHADDDFVTVLLQ----DHIGGLQVCYQN 268
+DC LL Y+P P+ E + H D VT++ Q + LQ
Sbjct: 153 LDCEP--LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 269 HWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANR 307
+ D+P P A+++ G + L++ + + H V A R
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPR 249
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 217 MDCAEGLLLLGHYYPACPQ----PELTMGATEHADDDFVTVLLQ----DHIGGLQVCYQN 268
+DC LL Y+P P+ E + H D VT++ Q + LQ
Sbjct: 153 LDCEP--LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 269 HWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANR 307
+ D+P P A+++ G + L++ + + H V A R
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPR 249
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 217 MDCAEGLLLLGHYYPACPQ----PELTMGATEHADDDFVTVLLQ----DHIGGLQVCYQN 268
+DC LL Y+P P+ E + H D VT++ Q + LQ
Sbjct: 173 LDCEP--LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 230
Query: 269 HWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANR 307
+ D+P P A+++ G + L++ + + H V A R
Sbjct: 231 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPR 269
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 217 MDCAEGLLLLGHYYPACPQ----PELTMGATEHADDDFVTVLLQ----DHIGGLQVCYQN 268
+DC LL Y+P P+ E + H D VT++ Q + LQ
Sbjct: 153 LDCEP--LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 269 HWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANR 307
+ D+P P A+++ G + L++ + + H V A R
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPR 249
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 217 MDCAEGLLLLGHYYPACPQ----PELTMGATEHADDDFVTVLLQ----DHIGGLQVCYQN 268
+DC LL Y+P P+ E + H D VT++ Q + LQ
Sbjct: 153 LDCEP--LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210
Query: 269 HWIDVPPSPGALVINIGDLLQLISNDKFISAEHRVLANR 307
+ D+P P A+++ G + L++ + + H V A R
Sbjct: 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPR 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,287,657
Number of Sequences: 62578
Number of extensions: 464392
Number of successful extensions: 1147
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 24
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)