BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017377
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS------RQ 273
VLDVGCG G L + + V V + QV A R A + N ++
Sbjct: 65 VLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXD 122
Query: 274 LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
LP+ SFD V + + G L E R+L+PGG +
Sbjct: 123 LPFEDASFDAVWALES-LHHXPDRGRALREXARVLRPGGTVAIA 165
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLP 275
VLDVGCG G L AV V + E +Q ERG L + G+ S LP
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVX---IQKGKERGEGPDLSFIKGDLSS--LP 111
Query: 276 YPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGY 313
+ + F+ + + W ++ L E R+LK GY
Sbjct: 112 FENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGY 148
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-----L 274
VLD+G G G L + C+ V +AT V++A + N +Q L
Sbjct: 25 VLDIGAGAGHTA--LAFSPYVQECIGV-DATKEXVEVASSFAQEKGVENVRFQQGTAESL 81
Query: 275 PYPSLSFDMVHCAQCGIIW-DKKEGIFLIEADRLLKPGGYFVL 316
P+P SFD++ C + D ++ + E R+LK G F+L
Sbjct: 82 PFPDDSFDIITCRYAAHHFSDVRKAVR--EVARVLKQDGRFLL 122
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYE---ATGSQVQLALERGLPAMIGNFISRQLP 275
VLD+ CG G F L V V + E + + E + ++G+ +R+L
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRESNVEFIVGD--ARKLS 98
Query: 276 YPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFV 315
+ +FD V + ++ E E R+LKP G F+
Sbjct: 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+S+L+VG G G + L + + V E + + + + R A LP+P
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGV-----EPSEAXLAVGRRRAPEATWVRAWGEALPFP 92
Query: 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
SFD+V + E + L+EA R+L+PGG V+
Sbjct: 93 GESFDVVLLFTTLEFVEDVERV-LLEARRVLRPGGALVV 130
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP 277
+ VLD+GC G+ GA ++K V+ EA + A E+ ++G+ + PY
Sbjct: 34 KEVLDIGCSSGALGA---AIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETXDXPYE 90
Query: 278 SLSFDMVHCAQCGIIWDKKEGIF 300
FD C I D E +F
Sbjct: 91 EEQFD------CVIFGDVLEHLF 107
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 214 QAGVQSVLDVGCGFGSF--------GAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM 265
+ G ++D+GCGFG F ++++ L L +A A G + ER
Sbjct: 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERA---- 96
Query: 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317
+L P SFD+ + + + + + + L PGG+FV +
Sbjct: 97 ----DLDKLHLPQDSFDLAYSS-LALHYVEDVARLFRTVHQALSPGGHFVFS 143
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLS 280
+++G G G F L + + V E + ++A +RG+ + G + LP S
Sbjct: 52 VEIGVGTGRFAVPL------KIKIGV-EPSERXAEIARKRGVFVLKGT--AENLPLKDES 102
Query: 281 FDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316
FD D E L EA R+LK GGY ++
Sbjct: 103 FDFALXVTTICFVDDPERA-LKEAYRILKKGGYLIV 137
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 220 VLDVGCGFGSFGAHLVS-------LKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272
+LD+GCG G L S + + + + + E L + G A +
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 273 QLPYPSLSFDM-VHCAQCGIIWDKKEGIFLI-EADRLLKPGGYFVL 316
L + SFD V A + D KE +I E R+LKPG Y L
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>pdb|3UZ0|B Chain B, Crystal Structure Of Spoiiiah And Spoiiq Complex
pdb|3UZ0|D Chain D, Crystal Structure Of Spoiiiah And Spoiiq Complex
Length = 152
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 85 ELDLCGKERENFVPCYNVSANLLAGF----KEGEEFDRHCGMSGLGDRCLVRPPKD---- 136
E D +E+E + YN + +L G K+G++FD +SG +V+ KD
Sbjct: 29 ETDAAKEEKEAALVTYNNTYSLSKGIDLAEKDGKDFDVSASLSG----TVVKAEKDPVLG 84
Query: 137 YKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSED 186
Y + + G ++ + +++ +Q G K+ ++ ++ +SED
Sbjct: 85 YVVEVEHADGLSTVYQSLSEVSVEQ----GDKVKQNQVIGKSGKNLYSED 130
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 156 KITKDQFLSSGSMTKRLMLLEENQIAFHSEDGLVFDG----VKDYSRQIAE--MIGLGTD 209
++T+ +FL +R+ L+ IA S D DG ++D + + +I
Sbjct: 132 EMTEAEFLER---ARRVGLV----IAAQSPDLAPLDGKLYALRDVTATVESVPLIASSIM 184
Query: 210 SEFLQAGVQS-VLDVGCGFGSFGAHLVSLKLMA-VCVAVYEATGSQVQ---LALERGLPA 264
S+ L AG +S VLDV G G+F L +L+A VA+ + G +V+ ++E L
Sbjct: 185 SKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTMVAIGQGAGRRVRALLTSMEAPLGR 244
Query: 265 MIGNFI 270
+GN I
Sbjct: 245 AVGNAI 250
>pdb|3TUF|B Chain B, Structure Of The Spoiiq-Spoiiiah Pore Forming Complex
Length = 245
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 85 ELDLCGKERENFVPCYNVSANLLAGF----KEGEEFDRHCGMSGLGDRCLVRPPKD---- 136
E D +E+E + YN + +L G K+G++FD +SG +V+ KD
Sbjct: 59 ETDAAKEEKEAALVTYNNTYSLSKGIDLAEKDGKDFDVSASLSG----TVVKAEKDPVLG 114
Query: 137 YKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRLMLLEENQIAFHSED 186
Y + + G ++ + +++ +Q G K+ ++ ++ +SED
Sbjct: 115 YVVEVEHADGLSTVYQSLSEVSVEQ----GDKVKQNQVIGKSGKNLYSED 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,468,763
Number of Sequences: 62578
Number of extensions: 409676
Number of successful extensions: 825
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 13
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)