Query 017377
Match_columns 372
No_of_seqs 430 out of 2634
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3.2E-66 6.9E-71 510.1 14.4 266 95-372 1-270 (506)
2 COG2226 UbiE Methylase involve 99.8 6.9E-19 1.5E-23 162.7 14.4 120 194-323 37-161 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 2.8E-18 6.1E-23 159.4 11.1 104 218-322 49-157 (233)
4 PF08241 Methyltransf_11: Meth 99.7 1.7E-17 3.7E-22 130.7 10.2 93 221-316 1-95 (95)
5 PLN02233 ubiquinone biosynthes 99.7 1.5E-16 3.2E-21 150.5 15.2 105 218-323 75-187 (261)
6 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.3E-16 9.4E-21 142.3 9.3 102 218-323 61-166 (243)
7 PTZ00098 phosphoethanolamine N 99.6 4E-15 8.7E-20 140.8 16.1 118 195-322 39-160 (263)
8 PRK10258 biotin biosynthesis p 99.6 2.4E-15 5.1E-20 141.1 14.0 103 217-323 43-145 (251)
9 PLN02244 tocopherol O-methyltr 99.6 7.5E-15 1.6E-19 143.9 16.8 102 217-321 119-226 (340)
10 KOG1540 Ubiquinone biosynthesi 99.6 3.6E-15 7.9E-20 136.5 12.8 133 188-321 64-217 (296)
11 PRK14103 trans-aconitate 2-met 99.6 5.3E-15 1.2E-19 139.2 12.4 111 197-320 18-128 (255)
12 PLN02396 hexaprenyldihydroxybe 99.6 8.9E-15 1.9E-19 141.9 13.9 134 217-354 132-288 (322)
13 PF13489 Methyltransf_23: Meth 99.6 6.4E-15 1.4E-19 127.5 11.4 125 218-351 24-159 (161)
14 TIGR00477 tehB tellurite resis 99.6 2.9E-14 6.3E-19 129.1 15.6 141 218-364 32-178 (195)
15 PRK05785 hypothetical protein; 99.6 9.8E-15 2.1E-19 135.2 12.6 89 218-312 53-141 (226)
16 TIGR02752 MenG_heptapren 2-hep 99.6 2.9E-14 6.3E-19 131.9 15.4 119 194-321 31-154 (231)
17 PRK11207 tellurite resistance 99.6 4.3E-14 9.3E-19 128.2 15.0 139 218-364 32-179 (197)
18 PRK01683 trans-aconitate 2-met 99.5 8.5E-14 1.8E-18 131.0 14.8 113 197-320 20-132 (258)
19 PF13847 Methyltransf_31: Meth 99.5 3.6E-14 7.8E-19 123.0 11.3 102 217-320 4-112 (152)
20 TIGR00740 methyltransferase, p 99.5 1.8E-13 3.8E-18 127.6 16.0 102 218-321 55-164 (239)
21 TIGR02072 BioC biotin biosynth 99.5 7E-14 1.5E-18 128.9 12.8 105 217-323 35-140 (240)
22 PRK08317 hypothetical protein; 99.5 1.5E-13 3.3E-18 126.5 14.8 117 195-320 6-126 (241)
23 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.9E-13 6.2E-18 132.0 17.3 134 218-355 115-256 (340)
24 PRK11088 rrmA 23S rRNA methylt 99.5 7.2E-14 1.6E-18 132.8 12.7 98 218-323 87-186 (272)
25 PRK11036 putative S-adenosyl-L 99.5 6.8E-14 1.5E-18 131.7 12.4 102 217-322 45-153 (255)
26 PF07021 MetW: Methionine bios 99.5 1E-13 2.2E-18 123.2 12.3 130 218-353 15-165 (193)
27 PF12847 Methyltransf_18: Meth 99.5 9.5E-14 2.1E-18 113.4 10.6 100 218-319 3-112 (112)
28 PLN02336 phosphoethanolamine N 99.5 1.4E-13 3E-18 140.8 14.0 103 217-322 267-373 (475)
29 PRK15068 tRNA mo(5)U34 methylt 99.5 1.5E-13 3.4E-18 133.6 13.5 132 218-353 124-272 (322)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 3E-13 6.5E-18 126.9 14.2 102 218-321 58-167 (247)
31 PRK12335 tellurite resistance 99.5 5E-13 1.1E-17 128.1 15.2 98 218-319 122-224 (287)
32 PF13649 Methyltransf_25: Meth 99.5 4.2E-14 9.2E-19 114.1 6.6 93 220-312 1-101 (101)
33 TIGR03587 Pse_Me-ase pseudamin 99.5 1.2E-12 2.7E-17 119.3 16.8 100 218-321 45-145 (204)
34 TIGR00452 methyltransferase, p 99.5 3.5E-13 7.6E-18 130.3 13.3 132 218-353 123-271 (314)
35 PF02353 CMAS: Mycolic acid cy 99.5 3.1E-13 6.7E-18 128.4 12.1 114 194-320 48-168 (273)
36 COG2230 Cfa Cyclopropane fatty 99.5 4.2E-13 9.1E-18 126.6 12.8 117 194-323 58-181 (283)
37 PF08242 Methyltransf_12: Meth 99.5 1.9E-14 4.2E-19 115.4 3.1 92 221-314 1-99 (99)
38 KOG1270 Methyltransferases [Co 99.5 1.6E-13 3.5E-18 126.4 9.3 100 217-323 90-200 (282)
39 PRK11873 arsM arsenite S-adeno 99.5 9.9E-13 2.1E-17 124.9 14.6 103 218-321 79-186 (272)
40 COG4106 Tam Trans-aconitate me 99.4 5.2E-13 1.1E-17 119.7 10.6 115 197-322 19-133 (257)
41 PRK11705 cyclopropane fatty ac 99.4 1.2E-12 2.5E-17 130.3 13.9 115 194-321 153-270 (383)
42 PRK00107 gidB 16S rRNA methylt 99.4 2.1E-12 4.5E-17 116.1 14.1 116 218-353 47-167 (187)
43 PF03141 Methyltransf_29: Puta 99.4 3.9E-13 8.4E-18 134.1 9.8 124 216-354 365-490 (506)
44 smart00828 PKS_MT Methyltransf 99.4 1.9E-12 4E-17 119.2 13.5 100 219-321 2-107 (224)
45 smart00138 MeTrc Methyltransfe 99.4 8.8E-13 1.9E-17 124.9 11.6 103 217-319 100-243 (264)
46 KOG4300 Predicted methyltransf 99.4 1.8E-12 4E-17 115.4 11.3 103 218-323 78-187 (252)
47 PRK06922 hypothetical protein; 99.4 1.1E-12 2.5E-17 135.6 11.4 102 218-320 420-539 (677)
48 PF03848 TehB: Tellurite resis 99.4 8.9E-12 1.9E-16 112.0 15.3 139 218-362 32-176 (192)
49 PRK00216 ubiE ubiquinone/menaq 99.4 8.2E-12 1.8E-16 115.3 15.1 103 218-321 53-161 (239)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 7.6E-12 1.6E-16 114.3 14.6 102 218-320 41-145 (223)
51 PF05401 NodS: Nodulation prot 99.4 6.8E-12 1.5E-16 112.0 12.2 98 218-319 45-147 (201)
52 PRK06202 hypothetical protein; 99.4 1.5E-11 3.3E-16 114.1 14.2 102 217-320 61-168 (232)
53 TIGR00537 hemK_rel_arch HemK-r 99.3 4.2E-11 9.1E-16 106.7 16.1 120 218-354 21-164 (179)
54 TIGR02021 BchM-ChlM magnesium 99.3 2.2E-11 4.7E-16 112.0 14.3 150 193-354 38-205 (219)
55 PRK00121 trmB tRNA (guanine-N( 99.3 6.3E-12 1.4E-16 114.4 9.8 101 218-320 42-158 (202)
56 TIGR02469 CbiT precorrin-6Y C5 99.3 3.9E-11 8.4E-16 99.3 13.6 97 218-319 21-123 (124)
57 KOG1541 Predicted protein carb 99.3 2.4E-11 5.3E-16 109.3 13.0 124 189-323 29-165 (270)
58 PLN02336 phosphoethanolamine N 99.3 1.3E-11 2.9E-16 126.2 12.8 101 218-321 39-145 (475)
59 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.5E-11 7.6E-16 110.4 13.8 100 218-320 36-154 (213)
60 PRK11188 rrmJ 23S rRNA methylt 99.3 3.6E-11 7.7E-16 110.1 13.4 97 218-321 53-168 (209)
61 PF05175 MTS: Methyltransferas 99.3 1.5E-10 3.2E-15 102.5 16.8 113 197-319 20-141 (170)
62 PRK13944 protein-L-isoaspartat 99.3 4E-11 8.7E-16 109.4 13.4 109 196-319 60-174 (205)
63 PF08003 Methyltransf_9: Prote 99.3 2.3E-11 5.1E-16 115.1 12.0 131 218-352 117-264 (315)
64 TIGR00138 gidB 16S rRNA methyl 99.3 9.5E-11 2.1E-15 104.9 15.1 95 218-319 44-143 (181)
65 PRK09489 rsmC 16S ribosomal RN 99.3 1.2E-10 2.6E-15 114.2 17.0 116 194-320 182-305 (342)
66 TIGR02081 metW methionine bios 99.3 6.8E-11 1.5E-15 106.7 12.3 129 218-354 15-166 (194)
67 KOG3010 Methyltransferase [Gen 99.3 1.3E-11 2.8E-16 112.6 7.5 98 218-320 35-139 (261)
68 TIGR02716 C20_methyl_CrtF C-20 99.2 2.7E-10 5.8E-15 110.1 16.7 101 218-322 151-258 (306)
69 PRK05134 bifunctional 3-demeth 99.2 9.3E-11 2E-15 108.6 13.0 100 218-321 50-154 (233)
70 PRK13942 protein-L-isoaspartat 99.2 1.1E-10 2.4E-15 107.1 13.1 111 194-319 62-177 (212)
71 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 3E-15 114.8 14.4 115 194-318 214-340 (378)
72 TIGR00091 tRNA (guanine-N(7)-) 99.2 4E-11 8.7E-16 108.4 9.8 101 218-320 18-134 (194)
73 PRK08287 cobalt-precorrin-6Y C 99.2 3.6E-10 7.8E-15 101.4 15.7 115 218-351 33-152 (187)
74 COG4976 Predicted methyltransf 99.2 1.2E-11 2.6E-16 111.9 5.9 136 217-356 126-266 (287)
75 TIGR00406 prmA ribosomal prote 99.2 2.2E-10 4.7E-15 110.0 14.8 97 218-320 161-261 (288)
76 COG2813 RsmC 16S RNA G1207 met 99.2 4.8E-10 1E-14 106.3 16.7 129 180-319 129-267 (300)
77 TIGR00080 pimt protein-L-isoas 99.2 1.7E-10 3.6E-15 106.0 13.2 109 196-319 65-178 (215)
78 PRK04266 fibrillarin; Provisio 99.2 6.8E-10 1.5E-14 102.8 17.0 128 218-353 74-208 (226)
79 PLN03075 nicotianamine synthas 99.2 1.8E-10 3.8E-15 110.0 13.2 103 216-319 123-234 (296)
80 TIGR01983 UbiG ubiquinone bios 99.2 1.2E-10 2.6E-15 107.0 11.5 101 217-321 46-152 (224)
81 PLN02585 magnesium protoporphy 99.2 2.3E-10 4.9E-15 110.9 13.6 130 218-354 146-298 (315)
82 PRK00517 prmA ribosomal protei 99.2 9.2E-10 2E-14 103.5 17.4 112 218-353 121-236 (250)
83 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.1E-10 4.6E-15 113.3 12.6 101 218-320 124-237 (390)
84 PRK13255 thiopurine S-methyltr 99.2 3.5E-10 7.7E-15 104.2 13.3 96 218-316 39-153 (218)
85 PRK14967 putative methyltransf 99.2 1.2E-09 2.6E-14 100.9 16.8 101 218-321 38-162 (223)
86 PRK00377 cbiT cobalt-precorrin 99.2 7.8E-10 1.7E-14 100.2 15.1 98 218-319 42-146 (198)
87 PRK14968 putative methyltransf 99.2 1.5E-09 3.2E-14 96.7 16.4 119 218-352 25-170 (188)
88 TIGR01177 conserved hypothetic 99.2 6.5E-10 1.4E-14 108.6 14.7 116 195-321 169-297 (329)
89 PF13659 Methyltransf_26: Meth 99.2 1.3E-10 2.8E-15 95.6 8.3 100 218-319 2-116 (117)
90 PRK07580 Mg-protoporphyrin IX 99.1 4.7E-10 1E-14 103.4 12.8 91 218-314 65-162 (230)
91 COG2264 PrmA Ribosomal protein 99.1 3.6E-10 7.7E-15 107.7 12.0 117 217-353 163-286 (300)
92 TIGR03438 probable methyltrans 99.1 4.7E-10 1E-14 108.3 12.9 105 218-322 65-181 (301)
93 PTZ00146 fibrillarin; Provisio 99.1 7.3E-10 1.6E-14 105.5 13.8 127 218-351 134-267 (293)
94 PF06325 PrmA: Ribosomal prote 99.1 1E-09 2.2E-14 105.2 13.1 116 218-354 163-282 (295)
95 cd02440 AdoMet_MTases S-adenos 99.1 9.3E-10 2E-14 86.1 10.2 97 219-317 1-103 (107)
96 TIGR00438 rrmJ cell division p 99.1 3.1E-09 6.7E-14 95.4 14.8 96 218-319 34-147 (188)
97 PLN02232 ubiquinone biosynthes 99.1 3.9E-10 8.4E-15 98.9 8.6 77 245-322 1-85 (160)
98 TIGR03534 RF_mod_PrmC protein- 99.1 3.3E-09 7.3E-14 98.9 15.2 100 218-319 89-218 (251)
99 KOG2361 Predicted methyltransf 99.1 8.5E-10 1.8E-14 100.8 10.2 129 189-323 50-188 (264)
100 KOG1271 Methyltransferases [Ge 99.1 9.5E-10 2.1E-14 96.4 9.9 103 218-321 69-184 (227)
101 PF05148 Methyltransf_8: Hypot 99.1 2E-09 4.3E-14 97.0 12.1 122 218-365 74-200 (219)
102 PRK07402 precorrin-6B methylas 99.0 5.9E-09 1.3E-13 94.2 13.6 108 199-320 31-144 (196)
103 PRK00312 pcm protein-L-isoaspa 99.0 6.3E-09 1.4E-13 95.2 13.9 106 196-319 66-176 (212)
104 TIGR00563 rsmB ribosomal RNA s 99.0 8.4E-09 1.8E-13 104.3 14.5 117 198-323 228-373 (426)
105 PRK13256 thiopurine S-methyltr 99.0 1.3E-08 2.9E-13 93.9 14.5 110 218-330 45-175 (226)
106 PRK10901 16S rRNA methyltransf 99.0 8.6E-09 1.9E-13 104.3 14.2 116 199-323 235-377 (427)
107 KOG3045 Predicted RNA methylas 99.0 4.2E-09 9.1E-14 97.0 10.4 119 218-364 182-305 (325)
108 TIGR03533 L3_gln_methyl protei 99.0 2.6E-08 5.5E-13 95.5 16.3 100 218-319 123-252 (284)
109 PRK13943 protein-L-isoaspartat 98.9 1E-08 2.2E-13 99.7 13.2 109 195-318 67-180 (322)
110 COG4123 Predicted O-methyltran 98.9 1.1E-08 2.4E-13 95.1 12.8 102 218-320 46-172 (248)
111 PRK09328 N5-glutamine S-adenos 98.9 2.4E-08 5.2E-13 94.7 15.5 99 218-318 110-238 (275)
112 PRK14901 16S rRNA methyltransf 98.9 2.1E-08 4.6E-13 101.6 15.6 116 199-323 243-389 (434)
113 PRK14966 unknown domain/N5-glu 98.9 2.4E-08 5.1E-13 99.5 15.5 120 218-351 253-401 (423)
114 PF01135 PCMT: Protein-L-isoas 98.9 8.1E-09 1.8E-13 94.4 10.7 112 194-320 58-174 (209)
115 PRK14904 16S rRNA methyltransf 98.9 1E-08 2.2E-13 104.2 12.4 105 218-323 252-382 (445)
116 smart00650 rADc Ribosomal RNA 98.9 1.3E-08 2.9E-13 89.8 10.9 106 199-319 4-114 (169)
117 TIGR00536 hemK_fam HemK family 98.9 3E-08 6.5E-13 95.0 14.2 101 218-320 116-246 (284)
118 PF03291 Pox_MCEL: mRNA cappin 98.9 5.9E-09 1.3E-13 101.7 9.0 103 217-321 63-189 (331)
119 COG2242 CobL Precorrin-6B meth 98.9 1.4E-07 3E-12 83.8 16.5 107 199-320 25-137 (187)
120 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.6E-08 3.4E-13 95.9 11.2 106 218-323 73-204 (264)
121 PRK00811 spermidine synthase; 98.9 4.5E-08 9.7E-13 93.8 14.3 102 216-319 76-192 (283)
122 PF06080 DUF938: Protein of un 98.9 2.9E-08 6.3E-13 89.7 12.1 142 219-362 28-204 (204)
123 PRK11805 N5-glutamine S-adenos 98.9 2.2E-08 4.8E-13 96.9 12.1 100 218-319 135-264 (307)
124 PRK04457 spermidine synthase; 98.9 6.3E-08 1.4E-12 91.7 14.6 117 195-319 52-178 (262)
125 PRK14903 16S rRNA methyltransf 98.9 3.6E-08 7.8E-13 99.8 13.8 106 218-323 239-371 (431)
126 PF05219 DREV: DREV methyltran 98.8 2.1E-08 4.6E-13 93.2 10.8 95 216-318 94-188 (265)
127 PF00891 Methyltransf_2: O-met 98.8 3E-08 6.5E-13 92.4 11.7 102 216-323 100-204 (241)
128 PRK01581 speE spermidine synth 98.8 1E-07 2.2E-12 93.4 15.0 102 216-319 150-269 (374)
129 PHA03411 putative methyltransf 98.8 2.9E-08 6.4E-13 93.6 10.9 98 218-317 66-182 (279)
130 PRK14902 16S rRNA methyltransf 98.8 4.1E-08 8.9E-13 99.8 12.3 117 198-323 240-384 (444)
131 TIGR03704 PrmC_rel_meth putati 98.8 1.4E-07 3E-12 88.8 14.7 101 218-319 88-217 (251)
132 KOG2940 Predicted methyltransf 98.8 1.2E-08 2.6E-13 92.6 6.6 103 218-323 74-179 (325)
133 COG2518 Pcm Protein-L-isoaspar 98.8 1E-07 2.2E-12 86.3 12.7 106 195-319 59-170 (209)
134 PHA03412 putative methyltransf 98.7 7.2E-08 1.6E-12 89.1 10.6 95 218-313 51-158 (241)
135 PRK01544 bifunctional N5-gluta 98.7 1.3E-07 2.8E-12 97.6 13.6 99 218-318 140-269 (506)
136 PF05724 TPMT: Thiopurine S-me 98.7 4.5E-07 9.9E-12 83.5 15.4 130 218-353 39-188 (218)
137 PF05891 Methyltransf_PK: AdoM 98.7 7.4E-08 1.6E-12 87.6 9.8 137 216-354 55-200 (218)
138 PLN02366 spermidine synthase 98.7 3.3E-07 7.1E-12 88.7 14.3 102 216-319 91-207 (308)
139 KOG1975 mRNA cap methyltransfe 98.7 1E-07 2.3E-12 90.5 10.3 104 217-322 118-241 (389)
140 COG2519 GCD14 tRNA(1-methylade 98.7 4.7E-07 1E-11 83.9 14.4 110 199-323 85-200 (256)
141 COG0220 Predicted S-adenosylme 98.7 9.1E-08 2E-12 88.5 9.1 101 218-320 50-166 (227)
142 PRK03612 spermidine synthase; 98.7 2.1E-07 4.7E-12 96.3 12.5 103 216-320 297-417 (521)
143 TIGR00417 speE spermidine synt 98.6 5E-07 1.1E-11 85.9 13.7 102 216-319 72-187 (270)
144 PF02390 Methyltransf_4: Putat 98.6 1.6E-07 3.4E-12 85.1 9.4 100 218-319 19-134 (195)
145 PF01739 CheR: CheR methyltran 98.6 2.3E-07 5E-12 84.0 10.0 104 216-319 31-176 (196)
146 PLN02781 Probable caffeoyl-CoA 98.6 4.1E-07 9E-12 84.7 11.9 99 217-319 69-179 (234)
147 PRK13168 rumA 23S rRNA m(5)U19 98.6 5.1E-07 1.1E-11 91.8 13.4 110 195-320 284-402 (443)
148 COG2890 HemK Methylase of poly 98.6 8.2E-07 1.8E-11 84.9 13.7 99 219-319 113-239 (280)
149 KOG2899 Predicted methyltransf 98.6 2.8E-07 6.1E-12 84.4 9.4 103 216-319 58-210 (288)
150 COG3963 Phospholipid N-methylt 98.5 1.1E-06 2.5E-11 76.2 11.5 120 193-320 33-158 (194)
151 PF10294 Methyltransf_16: Puta 98.5 1.3E-06 2.8E-11 77.7 11.7 131 186-321 17-159 (173)
152 PRK03522 rumB 23S rRNA methylu 98.5 1.2E-06 2.7E-11 85.1 12.1 97 218-321 175-277 (315)
153 PRK10611 chemotaxis methyltran 98.5 1.6E-06 3.5E-11 83.0 12.5 101 218-318 117-262 (287)
154 PRK15128 23S rRNA m(5)C1962 me 98.5 2.3E-06 5E-11 85.6 14.1 100 218-319 222-340 (396)
155 PRK00274 ksgA 16S ribosomal RN 98.5 7.6E-07 1.7E-11 84.8 9.7 84 194-288 28-113 (272)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.4 3.2E-06 6.8E-11 76.9 12.6 116 193-320 37-161 (199)
157 COG0500 SmtA SAM-dependent met 98.4 3E-06 6.4E-11 69.6 11.5 101 220-323 52-160 (257)
158 PRK11783 rlmL 23S rRNA m(2)G24 98.4 9.4E-07 2E-11 94.7 10.3 101 218-320 540-658 (702)
159 PF08704 GCD14: tRNA methyltra 98.4 4.1E-06 8.9E-11 78.4 12.9 128 198-351 30-167 (247)
160 PRK14896 ksgA 16S ribosomal RN 98.4 1.9E-06 4.1E-11 81.4 10.6 83 194-289 15-100 (258)
161 TIGR00478 tly hemolysin TlyA f 98.4 6E-06 1.3E-10 76.5 13.0 122 218-351 77-213 (228)
162 PRK04148 hypothetical protein; 98.4 3.2E-06 7E-11 71.6 10.2 91 218-318 18-109 (134)
163 KOG2904 Predicted methyltransf 98.4 7.1E-06 1.5E-10 76.7 13.2 122 194-321 131-288 (328)
164 cd04789 HTH_Cfa Helix-Turn-Hel 98.4 2E-08 4.3E-13 81.5 -3.6 61 28-91 5-65 (102)
165 COG1041 Predicted DNA modifica 98.3 3.8E-06 8.2E-11 81.5 11.3 115 194-319 183-311 (347)
166 TIGR00755 ksgA dimethyladenosi 98.3 6.6E-06 1.4E-10 77.4 12.4 82 194-288 15-102 (253)
167 PF01596 Methyltransf_3: O-met 98.3 3.9E-06 8.4E-11 76.6 9.3 100 217-320 46-157 (205)
168 PLN02672 methionine S-methyltr 98.3 6.6E-06 1.4E-10 90.8 12.7 100 218-319 120-279 (1082)
169 cd04775 HTH_Cfa-like Helix-Tur 98.3 4.1E-08 8.8E-13 79.7 -3.6 61 28-91 5-65 (102)
170 PLN02476 O-methyltransferase 98.3 9.2E-06 2E-10 77.3 11.7 99 217-319 119-229 (278)
171 TIGR00479 rumA 23S rRNA (uraci 98.3 8.2E-06 1.8E-10 82.7 11.9 95 218-319 294-397 (431)
172 TIGR02085 meth_trns_rumB 23S r 98.2 9E-06 1.9E-10 81.0 11.4 95 218-319 235-335 (374)
173 COG1352 CheR Methylase of chem 98.2 1.3E-05 2.8E-10 75.9 11.7 103 217-319 97-242 (268)
174 COG4122 Predicted O-methyltran 98.2 1.2E-05 2.5E-10 73.9 10.9 101 216-320 59-168 (219)
175 PRK11727 23S rRNA mA1618 methy 98.2 4.2E-05 9.2E-10 74.3 15.1 97 192-289 90-198 (321)
176 KOG1661 Protein-L-isoaspartate 98.2 7.6E-06 1.6E-10 73.7 9.1 95 218-319 84-194 (237)
177 KOG1499 Protein arginine N-met 98.2 6E-06 1.3E-10 79.8 9.1 97 217-315 61-164 (346)
178 PRK01544 bifunctional N5-gluta 98.2 4.9E-06 1.1E-10 85.9 9.0 103 215-319 346-463 (506)
179 cd04790 HTH_Cfa-like_unk Helix 98.2 3E-07 6.5E-12 81.6 -0.2 62 27-91 4-66 (172)
180 COG2263 Predicted RNA methylas 98.1 1.5E-05 3.3E-10 70.8 9.7 65 218-287 47-115 (198)
181 PF01170 UPF0020: Putative RNA 98.1 1.2E-05 2.7E-10 71.7 9.2 100 218-317 30-150 (179)
182 PTZ00338 dimethyladenosine tra 98.1 1.3E-05 2.8E-10 77.2 9.9 82 194-288 22-109 (294)
183 cd01282 HTH_MerR-like_sg3 Heli 98.1 4.7E-07 1E-11 74.7 -0.1 60 28-90 4-63 (112)
184 cd04787 HTH_HMRTR_unk Helix-Tu 98.1 5.7E-07 1.2E-11 76.5 -0.2 61 28-91 4-65 (133)
185 PLN02823 spermine synthase 98.1 4.2E-05 9.1E-10 74.9 11.9 102 216-319 103-221 (336)
186 cd01110 HTH_SoxR Helix-Turn-He 98.0 9.4E-07 2E-11 75.7 -0.1 55 28-82 5-59 (139)
187 PF05185 PRMT5: PRMT5 arginine 98.0 2.1E-05 4.5E-10 80.0 9.5 97 217-315 187-294 (448)
188 PF07942 N2227: N2227-like pro 98.0 0.00013 2.7E-09 69.2 14.1 135 217-355 57-242 (270)
189 cd04768 HTH_BmrR-like Helix-Tu 98.0 1.1E-06 2.3E-11 70.5 0.0 60 28-90 4-64 (96)
190 KOG1331 Predicted methyltransf 98.0 3.8E-06 8.2E-11 79.0 3.5 100 218-323 47-148 (293)
191 TIGR01950 SoxR redox-sensitive 98.0 1.2E-06 2.6E-11 75.3 -0.3 54 28-81 5-58 (142)
192 PRK11933 yebU rRNA (cytosine-C 98.0 7.5E-05 1.6E-09 76.3 12.6 106 218-323 115-247 (470)
193 PLN02589 caffeoyl-CoA O-methyl 98.0 2.8E-05 6E-10 73.0 8.7 98 217-318 80-190 (247)
194 cd04784 HTH_CadR-PbrR Helix-Tu 98.0 1.4E-06 3.1E-11 73.4 0.0 60 28-90 4-64 (127)
195 cd01108 HTH_CueR Helix-Turn-He 98.0 1.7E-06 3.7E-11 72.9 0.1 54 28-81 4-58 (127)
196 KOG1269 SAM-dependent methyltr 98.0 1.4E-05 2.9E-10 79.0 6.4 99 218-319 112-216 (364)
197 COG2521 Predicted archaeal met 98.0 4.9E-05 1.1E-09 69.6 9.4 147 194-353 118-275 (287)
198 TIGR02044 CueR Cu(I)-responsiv 98.0 1.8E-06 3.9E-11 72.8 0.1 54 28-81 4-58 (127)
199 KOG3201 Uncharacterized conser 97.9 5.4E-06 1.2E-10 71.7 3.0 134 218-363 31-175 (201)
200 PF09243 Rsm22: Mitochondrial 97.9 0.00013 2.8E-09 69.6 12.6 104 216-323 33-144 (274)
201 KOG3178 Hydroxyindole-O-methyl 97.9 6E-05 1.3E-09 73.0 10.0 102 216-323 177-280 (342)
202 PF11968 DUF3321: Putative met 97.9 0.0001 2.2E-09 67.2 10.9 128 218-365 53-195 (219)
203 cd01111 HTH_MerD Helix-Turn-He 97.9 2E-06 4.3E-11 70.3 -0.1 54 28-81 4-58 (107)
204 cd04788 HTH_NolA-AlbR Helix-Tu 97.9 2E-06 4.3E-11 69.0 -0.2 60 29-91 5-65 (96)
205 cd04782 HTH_BltR Helix-Turn-He 97.9 2.5E-06 5.4E-11 68.5 0.1 61 28-91 4-65 (97)
206 cd04781 HTH_MerR-like_sg6 Heli 97.9 2.3E-06 5.1E-11 71.4 -0.1 56 28-83 4-59 (120)
207 PRK10227 DNA-binding transcrip 97.9 2.7E-06 5.8E-11 72.5 0.1 54 28-81 4-58 (135)
208 COG0789 SoxR Predicted transcr 97.9 2.7E-06 6E-11 71.0 0.1 62 27-91 3-65 (124)
209 KOG3191 Predicted N6-DNA-methy 97.9 0.00026 5.6E-09 62.6 12.1 106 217-323 44-173 (209)
210 cd04770 HTH_HMRTR Helix-Turn-H 97.9 3.2E-06 7E-11 70.8 0.2 60 28-90 4-64 (123)
211 PRK04338 N(2),N(2)-dimethylgua 97.9 0.00012 2.5E-09 73.2 11.2 96 218-319 59-159 (382)
212 PF12147 Methyltransf_20: Puta 97.9 0.00027 6E-09 67.0 12.8 138 216-353 135-296 (311)
213 PRK15002 redox-sensitivie tran 97.8 3.2E-06 6.9E-11 73.6 -0.3 57 25-81 12-68 (154)
214 TIGR02047 CadR-PbrR Cd(II)/Pb( 97.8 3.9E-06 8.5E-11 70.8 0.2 55 28-82 4-59 (127)
215 PRK13752 putative transcriptio 97.8 3.6E-06 7.9E-11 72.5 -0.1 63 25-90 8-71 (144)
216 cd04783 HTH_MerR1 Helix-Turn-H 97.8 3.9E-06 8.4E-11 70.7 0.1 54 29-82 5-59 (126)
217 PRK00536 speE spermidine synth 97.8 0.00049 1.1E-08 65.0 14.2 93 216-320 72-173 (262)
218 cd04774 HTH_YfmP Helix-Turn-He 97.8 3.6E-06 7.9E-11 67.5 -0.2 53 29-81 5-58 (96)
219 TIGR00095 RNA methyltransferas 97.8 0.00052 1.1E-08 61.9 13.7 99 218-320 51-161 (189)
220 cd04785 HTH_CadR-PbrR-like Hel 97.8 4.5E-06 9.7E-11 70.3 0.3 60 28-90 4-64 (126)
221 TIGR02054 MerD mercuric resist 97.8 3.8E-06 8.2E-11 70.0 -0.2 62 26-90 5-67 (120)
222 cd01109 HTH_YyaN Helix-Turn-He 97.8 4.5E-06 9.8E-11 68.9 0.2 60 28-90 4-64 (113)
223 cd04786 HTH_MerR-like_sg7 Heli 97.8 4.2E-06 9.1E-11 71.0 -0.1 60 29-91 5-65 (131)
224 PRK13749 transcriptional regul 97.8 4.4E-06 9.4E-11 69.7 -0.3 63 26-91 5-68 (121)
225 cd04776 HTH_GnyR Helix-Turn-He 97.8 5.3E-06 1.2E-10 69.0 0.1 54 27-81 3-56 (118)
226 cd04779 HTH_MerR-like_sg4 Heli 97.8 4.9E-06 1.1E-10 70.8 -0.2 61 28-91 4-64 (134)
227 TIGR02043 ZntR Zn(II)-responsi 97.8 5.4E-06 1.2E-10 70.3 0.0 55 27-81 4-59 (131)
228 cd04777 HTH_MerR-like_sg1 Heli 97.8 5.6E-06 1.2E-10 67.6 0.0 60 28-91 4-63 (107)
229 cd04772 HTH_TioE_rpt1 First He 97.8 7.3E-06 1.6E-10 66.1 0.6 51 29-79 5-56 (99)
230 PRK09514 zntR zinc-responsive 97.7 6.2E-06 1.3E-10 70.8 -0.0 61 27-90 4-65 (140)
231 KOG3987 Uncharacterized conser 97.7 1.5E-05 3.2E-10 71.7 2.2 124 181-318 83-207 (288)
232 TIGR02051 MerR Hg(II)-responsi 97.7 6.4E-06 1.4E-10 69.2 -0.2 59 29-90 4-63 (124)
233 COG0421 SpeE Spermidine syntha 97.7 0.00029 6.2E-09 67.4 11.0 102 216-319 76-191 (282)
234 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.0002 4.3E-09 69.3 10.1 119 194-320 32-185 (311)
235 cd04766 HTH_HspR Helix-Turn-He 97.7 1.8E-06 3.9E-11 68.5 -3.5 62 27-91 4-66 (91)
236 cd04769 HTH_MerR2 Helix-Turn-H 97.7 7E-06 1.5E-10 68.1 -0.1 59 29-87 5-63 (116)
237 PF02527 GidB: rRNA small subu 97.7 0.00019 4.1E-09 64.4 9.0 93 219-318 51-148 (184)
238 PF01728 FtsJ: FtsJ-like methy 97.7 0.00015 3.2E-09 64.5 8.3 100 216-320 23-141 (181)
239 cd04763 HTH_MlrA-like Helix-Tu 97.7 7.8E-06 1.7E-10 61.0 -0.2 58 29-89 5-63 (68)
240 cd01107 HTH_BmrR Helix-Turn-He 97.7 9.6E-06 2.1E-10 66.4 0.2 61 28-91 4-66 (108)
241 COG0030 KsgA Dimethyladenosine 97.7 0.00033 7.3E-09 65.9 10.1 83 194-287 16-102 (259)
242 KOG0820 Ribosomal RNA adenine 97.7 0.00036 7.9E-09 65.4 10.1 83 194-287 44-130 (315)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00023 5E-09 67.0 8.7 105 216-322 56-203 (256)
244 PF13411 MerR_1: MerR HTH fami 97.6 6E-06 1.3E-10 61.6 -1.6 53 29-81 5-57 (69)
245 TIGR02143 trmA_only tRNA (urac 97.6 0.00019 4.2E-09 70.9 8.6 93 218-319 199-312 (353)
246 cd04773 HTH_TioE_rpt2 Second H 97.6 1.2E-05 2.5E-10 66.0 -0.1 54 28-81 4-58 (108)
247 cd01105 HTH_GlnR-like Helix-Tu 97.6 1.3E-05 2.9E-10 63.1 -0.0 62 27-91 4-66 (88)
248 TIGR03439 methyl_EasF probable 97.6 0.00081 1.8E-08 65.4 12.2 104 218-321 78-200 (319)
249 cd04780 HTH_MerR-like_sg5 Heli 97.6 1.2E-05 2.6E-10 64.3 -0.4 60 29-91 5-66 (95)
250 PRK05031 tRNA (uracil-5-)-meth 97.6 0.00037 8.1E-09 69.1 9.7 94 218-320 208-322 (362)
251 cd01279 HTH_HspR-like Helix-Tu 97.6 3.2E-06 7E-11 68.0 -4.2 63 26-91 3-66 (98)
252 KOG2352 Predicted spermine/spe 97.5 0.00041 9E-09 69.9 9.7 99 219-319 51-162 (482)
253 PF02475 Met_10: Met-10+ like- 97.5 0.00051 1.1E-08 62.4 9.4 91 218-315 103-199 (200)
254 COG4627 Uncharacterized protei 97.5 5.9E-05 1.3E-09 64.9 2.9 58 266-323 33-91 (185)
255 TIGR02987 met_A_Alw26 type II 97.5 0.00077 1.7E-08 70.1 11.7 43 218-260 33-82 (524)
256 PF01564 Spermine_synth: Sperm 97.5 0.001 2.2E-08 62.4 10.9 102 216-319 76-192 (246)
257 COG1092 Predicted SAM-dependen 97.5 0.0019 4.2E-08 64.4 13.2 104 218-323 219-341 (393)
258 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00049 1.1E-08 66.2 7.8 88 196-291 7-101 (296)
259 cd04764 HTH_MlrA-like_sg1 Heli 97.4 3.2E-05 7E-10 57.5 -0.3 53 29-81 5-57 (67)
260 KOG1709 Guanidinoacetate methy 97.4 0.0011 2.4E-08 60.2 9.4 117 189-317 83-205 (271)
261 PF03602 Cons_hypoth95: Conser 97.4 0.00083 1.8E-08 60.2 8.8 122 191-321 23-156 (183)
262 cd04767 HTH_HspR-like_MBC Heli 97.4 3.4E-05 7.4E-10 64.1 -0.3 54 27-81 4-58 (120)
263 KOG1500 Protein arginine N-met 97.3 0.0013 2.8E-08 63.4 9.5 95 217-316 178-280 (517)
264 cd04765 HTH_MlrA-like_sg2 Heli 97.3 3.9E-05 8.5E-10 61.8 -0.6 60 29-91 5-66 (99)
265 cd01106 HTH_TipAL-Mta Helix-Tu 97.3 4.7E-05 1E-09 61.7 -0.1 60 29-91 5-65 (103)
266 COG2520 Predicted methyltransf 97.3 0.0046 1E-07 60.5 13.6 118 218-348 190-313 (341)
267 KOG1663 O-methyltransferase [S 97.3 0.0026 5.6E-08 58.4 11.0 97 218-318 75-183 (237)
268 cd01104 HTH_MlrA-CarA Helix-Tu 97.3 5.3E-05 1.1E-09 56.3 -0.1 54 28-81 4-58 (68)
269 KOG3420 Predicted RNA methylas 97.3 0.00064 1.4E-08 58.1 6.2 69 218-288 50-122 (185)
270 PF10672 Methyltrans_SAM: S-ad 97.3 0.002 4.3E-08 61.7 10.5 101 218-320 125-240 (286)
271 PF08123 DOT1: Histone methyla 97.2 0.0029 6.3E-08 57.7 10.3 121 188-319 21-159 (205)
272 PF01269 Fibrillarin: Fibrilla 97.2 0.0031 6.7E-08 57.8 10.0 97 218-319 75-179 (229)
273 PRK15043 transcriptional regul 97.2 8.4E-05 1.8E-09 69.2 -0.1 56 26-81 5-61 (243)
274 PF00398 RrnaAD: Ribosomal RNA 97.2 0.002 4.3E-08 61.0 9.1 103 193-310 15-123 (262)
275 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0039 8.5E-08 67.1 12.2 103 218-320 192-349 (702)
276 PRK11760 putative 23S rRNA C24 97.1 0.01 2.2E-07 58.0 13.6 93 217-319 212-306 (357)
277 cd00592 HTH_MerR-like Helix-Tu 97.1 0.0001 2.2E-09 59.2 -0.0 53 29-81 5-57 (100)
278 COG0742 N6-adenine-specific me 97.1 0.014 3E-07 52.3 13.1 123 189-321 22-157 (187)
279 COG1189 Predicted rRNA methyla 97.1 0.012 2.6E-07 54.4 12.7 129 218-353 81-222 (245)
280 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.002 4.3E-08 64.1 8.2 97 218-319 46-148 (374)
281 cd04761 HTH_MerR-SF Helix-Turn 97.1 0.00016 3.4E-09 49.9 0.3 45 29-73 5-49 (49)
282 smart00422 HTH_MERR helix_turn 97.1 0.00011 2.5E-09 54.7 -0.5 53 29-81 5-58 (70)
283 KOG2915 tRNA(1-methyladenosine 97.0 0.012 2.6E-07 55.3 12.7 109 197-319 94-211 (314)
284 PF00376 MerR: MerR family reg 97.0 8.6E-05 1.9E-09 49.0 -1.5 34 29-62 4-38 (38)
285 COG0357 GidB Predicted S-adeno 97.0 0.0029 6.2E-08 58.1 7.9 120 217-352 68-192 (215)
286 COG0144 Sun tRNA and rRNA cyto 96.9 0.011 2.5E-07 58.4 12.5 106 218-323 158-293 (355)
287 PRK13182 racA polar chromosome 96.9 0.00017 3.7E-09 64.0 -0.5 61 28-91 4-64 (175)
288 PF03059 NAS: Nicotianamine sy 96.9 0.01 2.2E-07 56.6 11.1 102 217-319 121-231 (276)
289 PF13578 Methyltransf_24: Meth 96.8 0.00041 8.8E-09 56.0 0.9 96 221-318 1-105 (106)
290 COG0293 FtsJ 23S rRNA methylas 96.8 0.0058 1.3E-07 55.5 8.4 99 217-321 46-162 (205)
291 PF13679 Methyltransf_32: Meth 96.8 0.0041 8.9E-08 53.1 7.1 43 216-260 25-72 (141)
292 COG3897 Predicted methyltransf 96.8 0.0085 1.8E-07 53.8 8.7 97 218-321 81-182 (218)
293 COG0116 Predicted N6-adenine-s 96.7 0.019 4E-07 56.9 11.8 129 187-319 166-345 (381)
294 COG2265 TrmA SAM-dependent met 96.7 0.0061 1.3E-07 61.8 8.3 117 188-319 269-397 (432)
295 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.0073 1.6E-07 59.7 7.7 51 218-271 198-253 (352)
296 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.0083 1.8E-07 57.5 7.7 126 218-352 87-245 (283)
297 COG5459 Predicted rRNA methyla 96.5 0.013 2.8E-07 57.0 8.4 108 216-323 113-230 (484)
298 KOG2798 Putative trehalase [Ca 96.5 0.055 1.2E-06 52.0 12.5 153 194-354 132-336 (369)
299 cd04778 HTH_MerR-like_sg2 Heli 96.4 0.00081 1.8E-08 62.0 0.2 60 29-91 6-65 (219)
300 PF04816 DUF633: Family of unk 96.3 0.1 2.2E-06 47.6 13.1 116 220-354 1-123 (205)
301 TIGR01444 fkbM_fam methyltrans 96.2 0.0086 1.9E-07 50.6 5.3 41 219-260 1-41 (143)
302 PF04672 Methyltransf_19: S-ad 96.2 0.034 7.4E-07 52.6 9.5 105 216-322 68-194 (267)
303 PF06962 rRNA_methylase: Putat 95.8 0.051 1.1E-06 46.5 8.1 97 244-347 2-114 (140)
304 COG4262 Predicted spermidine s 95.8 0.062 1.3E-06 52.7 9.5 105 217-323 290-412 (508)
305 PF09445 Methyltransf_15: RNA 95.7 0.019 4E-07 50.5 5.2 67 218-287 1-76 (163)
306 COG4798 Predicted methyltransf 95.7 0.058 1.3E-06 48.5 8.2 133 218-354 50-204 (238)
307 KOG3115 Methyltransferase-like 95.7 0.033 7.1E-07 50.4 6.6 41 218-259 62-102 (249)
308 KOG2187 tRNA uracil-5-methyltr 95.7 0.021 4.5E-07 58.2 6.0 80 177-269 350-438 (534)
309 KOG1122 tRNA and rRNA cytosine 95.6 0.067 1.5E-06 53.3 9.1 107 216-323 241-376 (460)
310 cd04762 HTH_MerR-trunc Helix-T 95.6 0.0039 8.5E-08 42.3 0.3 45 29-73 5-49 (49)
311 COG4076 Predicted RNA methylas 95.5 0.045 9.7E-07 49.0 6.8 93 218-315 34-132 (252)
312 COG1064 AdhP Zn-dependent alco 95.4 0.042 9.1E-07 53.8 7.0 94 218-321 168-262 (339)
313 PLN02668 indole-3-acetate carb 95.3 0.21 4.4E-06 49.9 11.7 48 275-323 157-242 (386)
314 PF07091 FmrO: Ribosomal RNA m 95.1 0.15 3.2E-06 47.8 9.3 130 217-351 106-240 (251)
315 PRK13699 putative methylase; P 95.0 0.077 1.7E-06 49.2 7.2 50 298-364 52-101 (227)
316 PF05971 Methyltransf_10: Prot 94.6 0.13 2.7E-06 49.6 7.7 96 193-292 82-189 (299)
317 COG1889 NOP1 Fibrillarin-like 94.6 0.24 5.3E-06 44.9 8.9 98 216-320 76-182 (231)
318 PF04989 CmcI: Cephalosporin h 93.8 0.17 3.6E-06 46.2 6.4 102 217-320 33-149 (206)
319 KOG2793 Putative N2,N2-dimethy 93.8 0.92 2E-05 42.6 11.4 100 218-320 88-201 (248)
320 PF03492 Methyltransf_7: SAM d 93.3 0.51 1.1E-05 46.4 9.4 76 216-293 16-119 (334)
321 COG0286 HsdM Type I restrictio 93.2 0.88 1.9E-05 47.1 11.3 119 195-321 173-329 (489)
322 cd08283 FDH_like_1 Glutathione 93.1 1.1 2.3E-05 44.6 11.5 100 218-319 186-307 (386)
323 PF03269 DUF268: Caenorhabditi 93.1 0.059 1.3E-06 47.0 2.1 46 278-323 61-116 (177)
324 PF03514 GRAS: GRAS domain fam 92.8 3 6.5E-05 41.6 14.1 105 218-323 112-248 (374)
325 TIGR00006 S-adenosyl-methyltra 92.8 0.64 1.4E-05 45.0 9.0 58 194-260 6-63 (305)
326 PHA01634 hypothetical protein 92.6 1.1 2.3E-05 37.8 8.7 67 218-286 30-98 (156)
327 PF10354 DUF2431: Domain of un 92.5 1.9 4.2E-05 37.9 11.0 118 223-353 3-150 (166)
328 cd08254 hydroxyacyl_CoA_DH 6-h 92.4 0.94 2E-05 43.3 9.8 92 218-319 167-264 (338)
329 KOG1099 SAM-dependent methyltr 92.4 0.16 3.5E-06 46.8 4.0 95 216-317 41-162 (294)
330 PRK11524 putative methyltransf 92.3 0.39 8.4E-06 46.0 6.8 43 276-318 23-80 (284)
331 KOG1596 Fibrillarin and relate 92.2 0.39 8.5E-06 44.7 6.3 97 218-320 158-263 (317)
332 PF01861 DUF43: Protein of unk 92.2 4.8 0.0001 37.6 13.5 120 218-351 46-174 (243)
333 COG2384 Predicted SAM-dependen 92.1 4.5 9.8E-05 37.2 13.0 117 219-354 19-142 (226)
334 PF06859 Bin3: Bicoid-interact 91.8 0.11 2.4E-06 42.4 2.1 39 280-319 1-45 (110)
335 KOG2539 Mitochondrial/chloropl 91.8 0.3 6.5E-06 49.4 5.5 107 216-323 200-320 (491)
336 KOG1562 Spermidine synthase [A 91.4 0.5 1.1E-05 45.2 6.2 102 216-319 121-237 (337)
337 PF07757 AdoMet_MTase: Predict 91.3 0.19 4.1E-06 41.0 2.9 30 217-249 59-88 (112)
338 cd00315 Cyt_C5_DNA_methylase C 91.2 5 0.00011 38.2 13.1 66 219-287 2-69 (275)
339 KOG0822 Protein kinase inhibit 90.5 1.2 2.5E-05 46.0 8.2 99 217-316 368-476 (649)
340 PRK09424 pntA NAD(P) transhydr 90.0 2.6 5.6E-05 43.8 10.6 101 216-319 164-286 (509)
341 KOG2198 tRNA cytosine-5-methyl 89.8 2.8 6E-05 41.5 10.0 106 218-323 157-301 (375)
342 PRK09880 L-idonate 5-dehydroge 89.5 1.6 3.6E-05 42.4 8.5 93 218-319 171-267 (343)
343 PF00107 ADH_zinc_N: Zinc-bind 89.1 0.7 1.5E-05 37.9 4.8 84 226-321 1-92 (130)
344 TIGR03453 partition_RepA plasm 88.8 0.14 3.1E-06 51.2 0.3 65 12-77 22-87 (387)
345 PF02005 TRM: N2,N2-dimethylgu 88.7 3.2 6.9E-05 41.5 9.8 98 218-320 51-156 (377)
346 KOG2920 Predicted methyltransf 88.5 0.2 4.4E-06 47.5 1.2 102 217-323 117-239 (282)
347 COG3510 CmcI Cephalosporin hyd 88.4 3.4 7.5E-05 37.3 8.7 107 216-323 69-185 (237)
348 PF01555 N6_N4_Mtase: DNA meth 87.5 2.3 4.9E-05 38.2 7.4 39 218-259 193-231 (231)
349 KOG2730 Methylase [General fun 87.3 0.92 2E-05 41.8 4.5 67 218-287 96-172 (263)
350 KOG4589 Cell division protein 87.0 0.88 1.9E-05 40.9 4.2 101 217-323 70-189 (232)
351 cd05188 MDR Medium chain reduc 86.9 6.7 0.00014 35.8 10.4 94 218-321 136-235 (271)
352 TIGR02822 adh_fam_2 zinc-bindi 86.7 7.3 0.00016 37.7 10.9 88 218-319 167-255 (329)
353 COG4301 Uncharacterized conser 86.2 14 0.0003 34.9 11.6 104 217-323 79-198 (321)
354 TIGR00561 pntA NAD(P) transhyd 85.5 2.7 5.9E-05 43.6 7.5 96 217-315 164-281 (511)
355 COG3129 Predicted SAM-dependen 85.1 2 4.2E-05 40.0 5.5 100 189-291 53-164 (292)
356 cd08245 CAD Cinnamyl alcohol d 84.9 9.6 0.00021 36.4 10.8 93 218-319 164-257 (330)
357 PF01795 Methyltransf_5: MraW 84.1 8.6 0.00019 37.4 9.8 56 196-260 8-63 (310)
358 KOG0024 Sorbitol dehydrogenase 84.0 8.1 0.00017 37.7 9.4 98 218-323 171-278 (354)
359 COG0275 Predicted S-adenosylme 83.6 7 0.00015 37.7 8.8 63 190-260 5-67 (314)
360 cd08232 idonate-5-DH L-idonate 83.5 9.8 0.00021 36.5 10.2 93 218-319 167-263 (339)
361 KOG1501 Arginine N-methyltrans 83.5 2.7 5.9E-05 42.4 6.2 62 194-259 46-107 (636)
362 cd08234 threonine_DH_like L-th 83.4 12 0.00027 35.6 10.8 92 218-319 161-258 (334)
363 PRK11524 putative methyltransf 83.2 4.7 0.0001 38.5 7.6 40 218-260 210-249 (284)
364 COG1867 TRM1 N2,N2-dimethylgua 82.7 4.9 0.00011 39.8 7.5 101 217-323 53-159 (380)
365 TIGR02825 B4_12hDH leukotriene 82.7 17 0.00038 34.7 11.5 92 218-319 140-238 (325)
366 cd08237 ribitol-5-phosphate_DH 81.6 8 0.00017 37.6 8.8 92 218-319 165-257 (341)
367 cd08230 glucose_DH Glucose deh 81.1 9 0.0002 37.3 9.0 91 218-319 174-270 (355)
368 KOG2651 rRNA adenine N-6-methy 81.0 5.3 0.00011 39.8 7.0 41 216-258 153-193 (476)
369 PRK13699 putative methylase; P 79.6 7.8 0.00017 35.8 7.5 40 218-260 165-204 (227)
370 PF01555 N6_N4_Mtase: DNA meth 79.5 3.9 8.5E-05 36.6 5.5 53 297-364 35-88 (231)
371 COG1565 Uncharacterized conser 79.1 5.1 0.00011 39.6 6.3 44 217-260 78-128 (370)
372 PLN03154 putative allyl alcoho 78.7 22 0.00047 34.7 10.8 92 218-319 160-259 (348)
373 cd08239 THR_DH_like L-threonin 78.5 16 0.00035 35.1 9.8 93 218-319 165-263 (339)
374 TIGR03451 mycoS_dep_FDH mycoth 78.2 13 0.00029 36.2 9.2 93 218-320 178-278 (358)
375 cd00401 AdoHcyase S-adenosyl-L 77.9 12 0.00026 37.9 8.7 87 218-320 203-291 (413)
376 cd08281 liver_ADH_like1 Zinc-d 77.6 13 0.00028 36.5 9.0 92 218-319 193-291 (371)
377 cd08255 2-desacetyl-2-hydroxye 77.4 16 0.00034 33.9 9.1 91 218-319 99-191 (277)
378 COG0287 TyrA Prephenate dehydr 76.3 15 0.00033 35.1 8.7 88 218-313 4-93 (279)
379 TIGR03366 HpnZ_proposed putati 76.0 17 0.00037 34.1 8.9 93 218-319 122-219 (280)
380 PF05711 TylF: Macrocin-O-meth 75.8 25 0.00055 33.0 9.8 58 295-363 189-248 (248)
381 TIGR00497 hsdM type I restrict 75.1 44 0.00095 34.7 12.3 103 218-320 219-357 (501)
382 COG1063 Tdh Threonine dehydrog 74.5 18 0.00039 35.6 8.9 96 218-321 170-272 (350)
383 KOG1253 tRNA methyltransferase 74.3 2.2 4.8E-05 43.6 2.4 99 217-320 110-218 (525)
384 TIGR03201 dearomat_had 6-hydro 73.7 29 0.00062 33.7 10.1 94 218-320 168-274 (349)
385 TIGR01202 bchC 2-desacetyl-2-h 73.0 15 0.00033 35.1 7.9 85 218-319 146-232 (308)
386 COG0604 Qor NADPH:quinone redu 72.5 24 0.00053 34.4 9.2 94 218-321 144-244 (326)
387 cd05564 PTS_IIB_chitobiose_lic 71.9 10 0.00022 30.0 5.4 75 223-319 4-78 (96)
388 PF02636 Methyltransf_28: Puta 71.8 3 6.6E-05 39.0 2.6 43 218-260 20-69 (252)
389 PRK10742 putative methyltransf 71.7 14 0.0003 34.8 6.9 50 198-256 76-125 (250)
390 PF02254 TrkA_N: TrkA-N domain 71.6 6.4 0.00014 31.6 4.2 89 225-319 4-97 (116)
391 cd08294 leukotriene_B4_DH_like 70.9 46 0.001 31.5 10.7 90 218-318 145-241 (329)
392 PF00145 DNA_methylase: C-5 cy 70.9 63 0.0014 30.6 11.7 124 219-353 2-140 (335)
393 PLN02740 Alcohol dehydrogenase 69.9 30 0.00064 34.2 9.4 93 218-319 200-301 (381)
394 cd08261 Zn_ADH7 Alcohol dehydr 69.6 34 0.00073 32.8 9.5 92 218-319 161-259 (337)
395 PLN02586 probable cinnamyl alc 68.2 28 0.0006 34.2 8.7 93 218-319 185-279 (360)
396 cd08295 double_bond_reductase_ 68.2 53 0.0012 31.5 10.6 91 218-318 153-251 (338)
397 TIGR01764 excise DNA binding d 68.0 1.4 3.1E-05 29.4 -0.4 41 30-71 7-47 (49)
398 cd05278 FDH_like Formaldehyde 67.9 34 0.00074 32.7 9.2 92 218-318 169-267 (347)
399 PF02153 PDH: Prephenate dehyd 67.8 17 0.00036 34.2 6.7 52 230-287 1-52 (258)
400 TIGR00853 pts-lac PTS system, 67.6 16 0.00035 28.9 5.6 77 218-317 4-80 (95)
401 PRK01747 mnmC bifunctional tRN 67.5 16 0.00034 39.2 7.3 37 279-317 165-205 (662)
402 cd05565 PTS_IIB_lactose PTS_II 67.3 14 0.0003 29.7 5.1 75 223-319 5-79 (99)
403 PRK03659 glutathione-regulated 66.7 18 0.00038 38.5 7.3 99 219-323 402-503 (601)
404 PLN02827 Alcohol dehydrogenase 66.6 37 0.00081 33.5 9.3 93 218-319 195-296 (378)
405 PF04445 SAM_MT: Putative SAM- 66.5 22 0.00048 33.1 7.0 83 198-289 63-160 (234)
406 TIGR00675 dcm DNA-methyltransf 64.9 58 0.0012 31.6 10.0 65 220-287 1-66 (315)
407 PLN02178 cinnamyl-alcohol dehy 64.8 24 0.00051 35.0 7.5 93 218-319 180-274 (375)
408 COG2452 Predicted site-specifi 64.7 2 4.3E-05 38.4 -0.2 45 30-74 7-51 (193)
409 cd05285 sorbitol_DH Sorbitol d 64.4 57 0.0012 31.4 10.0 92 218-319 164-266 (343)
410 COG1568 Predicted methyltransf 64.4 73 0.0016 30.7 10.0 115 218-347 154-280 (354)
411 PF11599 AviRa: RRNA methyltra 64.2 25 0.00055 32.5 6.7 45 216-260 51-96 (246)
412 cd08242 MDR_like Medium chain 64.1 68 0.0015 30.3 10.3 86 218-318 157-245 (319)
413 KOG4058 Uncharacterized conser 63.5 23 0.00049 30.8 6.0 41 218-260 74-114 (199)
414 TIGR02818 adh_III_F_hyde S-(hy 63.5 47 0.001 32.6 9.3 93 218-319 187-288 (368)
415 cd08298 CAD2 Cinnamyl alcohol 62.9 88 0.0019 29.6 10.9 88 218-319 169-257 (329)
416 PRK10309 galactitol-1-phosphat 62.9 49 0.0011 31.9 9.2 93 218-319 162-261 (347)
417 cd08236 sugar_DH NAD(P)-depend 62.2 54 0.0012 31.4 9.3 92 218-318 161-258 (343)
418 cd08285 NADP_ADH NADP(H)-depen 61.5 54 0.0012 31.6 9.2 92 218-319 168-267 (351)
419 cd08300 alcohol_DH_class_III c 60.7 71 0.0015 31.2 10.0 93 218-319 188-289 (368)
420 PRK07502 cyclohexadienyl dehyd 60.5 48 0.001 31.7 8.6 89 218-315 7-97 (307)
421 KOG3924 Putative protein methy 60.2 70 0.0015 32.2 9.5 124 188-322 171-312 (419)
422 cd08277 liver_alcohol_DH_like 60.1 70 0.0015 31.2 9.8 93 218-319 186-287 (365)
423 cd05281 TDH Threonine dehydrog 59.5 72 0.0016 30.6 9.7 92 218-319 165-263 (341)
424 PTZ00357 methyltransferase; Pr 59.1 45 0.00098 36.1 8.3 93 219-313 703-830 (1072)
425 KOG0023 Alcohol dehydrogenase, 57.6 13 0.00029 36.3 3.9 96 220-323 187-284 (360)
426 PRK03562 glutathione-regulated 57.5 26 0.00056 37.5 6.6 96 218-320 401-500 (621)
427 PF05050 Methyltransf_21: Meth 57.3 18 0.0004 30.4 4.6 39 222-260 1-42 (167)
428 cd08279 Zn_ADH_class_III Class 56.6 99 0.0021 30.0 10.2 92 218-319 184-283 (363)
429 COG0686 Ald Alanine dehydrogen 56.3 29 0.00063 33.9 6.0 97 217-316 168-266 (371)
430 cd08231 MDR_TM0436_like Hypoth 56.1 96 0.0021 30.0 10.0 92 218-319 179-281 (361)
431 cd08293 PTGR2 Prostaglandin re 56.0 67 0.0015 30.7 8.8 90 218-318 156-254 (345)
432 PRK10669 putative cation:proto 55.8 28 0.00061 36.5 6.5 94 219-319 419-516 (558)
433 TIGR00692 tdh L-threonine 3-de 55.4 92 0.002 29.8 9.7 92 218-319 163-262 (340)
434 COG1255 Uncharacterized protei 55.2 56 0.0012 27.2 6.6 80 218-309 15-95 (129)
435 cd08241 QOR1 Quinone oxidoredu 53.9 1.3E+02 0.0029 27.7 10.3 90 218-318 141-238 (323)
436 COG0541 Ffh Signal recognition 53.9 1.7E+02 0.0037 29.9 11.2 125 196-323 78-226 (451)
437 cd08278 benzyl_alcohol_DH Benz 53.2 81 0.0018 30.8 9.0 93 218-320 188-287 (365)
438 cd08266 Zn_ADH_like1 Alcohol d 53.0 1.5E+02 0.0033 27.7 10.7 92 218-319 168-266 (342)
439 cd08267 MDR1 Medium chain dehy 52.1 2E+02 0.0043 26.7 11.2 91 218-318 145-240 (319)
440 COG2933 Predicted SAM-dependen 51.0 85 0.0018 30.0 8.0 86 216-311 211-296 (358)
441 TIGR00027 mthyl_TIGR00027 meth 50.9 2.2E+02 0.0047 26.8 12.9 101 217-320 82-199 (260)
442 PF12728 HTH_17: Helix-turn-he 50.8 4.4 9.6E-05 27.7 -0.3 43 30-73 7-49 (51)
443 PRK06522 2-dehydropantoate 2-r 50.6 1.9E+02 0.0042 27.1 10.9 94 219-319 2-101 (304)
444 cd08301 alcohol_DH_plants Plan 50.5 96 0.0021 30.2 9.0 93 218-319 189-290 (369)
445 cd08263 Zn_ADH10 Alcohol dehyd 50.5 1.1E+02 0.0024 29.7 9.5 92 218-319 189-288 (367)
446 PRK09590 celB cellobiose phosp 50.0 48 0.001 26.8 5.5 78 219-319 3-82 (104)
447 PRK13869 plasmid-partitioning 49.8 6.8 0.00015 39.5 0.7 63 12-75 37-100 (405)
448 cd05283 CAD1 Cinnamyl alcohol 49.7 1.3E+02 0.0029 28.7 9.8 93 218-319 171-264 (337)
449 cd08270 MDR4 Medium chain dehy 49.5 1.6E+02 0.0034 27.4 10.0 88 218-319 134-223 (305)
450 cd08243 quinone_oxidoreductase 49.4 2.1E+02 0.0046 26.4 11.0 89 218-319 144-239 (320)
451 cd08238 sorbose_phosphate_red 49.3 1.2E+02 0.0027 30.1 9.7 93 218-317 177-287 (410)
452 PF14740 DUF4471: Domain of un 49.0 29 0.00063 33.4 4.8 66 278-351 220-285 (289)
453 PLN02494 adenosylhomocysteinas 48.7 72 0.0016 33.0 7.8 88 218-320 255-343 (477)
454 TIGR00518 alaDH alanine dehydr 48.6 30 0.00064 34.5 5.0 97 217-316 167-265 (370)
455 PRK07417 arogenate dehydrogena 48.2 1.1E+02 0.0024 28.8 8.7 83 220-314 3-87 (279)
456 cd08233 butanediol_DH_like (2R 47.7 1.6E+02 0.0034 28.3 10.0 93 218-320 174-274 (351)
457 KOG2671 Putative RNA methylase 47.2 27 0.00059 34.5 4.3 103 218-323 210-359 (421)
458 KOG2912 Predicted DNA methylas 46.6 39 0.00085 33.0 5.2 63 194-260 83-145 (419)
459 PLN02514 cinnamyl-alcohol dehy 46.2 97 0.0021 30.2 8.3 93 218-319 182-276 (357)
460 PRK05476 S-adenosyl-L-homocyst 45.9 66 0.0014 32.8 7.0 88 218-321 213-302 (425)
461 cd01842 SGNH_hydrolase_like_5 45.6 38 0.00083 30.3 4.6 46 276-321 46-102 (183)
462 KOG1098 Putative SAM-dependent 45.3 21 0.00044 37.9 3.3 34 218-251 46-79 (780)
463 PF11899 DUF3419: Protein of u 45.1 35 0.00076 34.2 4.9 47 276-323 291-339 (380)
464 PF05206 TRM13: Methyltransfer 44.9 41 0.00089 31.8 5.1 34 218-251 20-57 (259)
465 TIGR00936 ahcY adenosylhomocys 44.8 1.3E+02 0.0028 30.5 8.9 87 218-320 196-284 (406)
466 PRK15001 SAM-dependent 23S rib 44.7 1.3E+02 0.0028 30.2 8.8 90 219-319 47-143 (378)
467 PRK05396 tdh L-threonine 3-deh 44.4 1.6E+02 0.0035 28.0 9.5 93 218-320 165-265 (341)
468 PF02558 ApbA: Ketopantoate re 43.9 51 0.0011 27.6 5.2 92 221-320 2-103 (151)
469 PRK10458 DNA cytosine methylas 43.7 2.9E+02 0.0063 28.5 11.4 41 218-260 89-129 (467)
470 cd08296 CAD_like Cinnamyl alco 43.0 2.8E+02 0.0061 26.4 10.9 92 218-319 165-260 (333)
471 KOG4684 Uncharacterized conser 42.8 19 0.00041 32.9 2.3 38 2-39 191-228 (275)
472 cd08289 MDR_yhfp_like Yhfp put 42.4 1.6E+02 0.0035 27.7 9.0 92 218-319 148-244 (326)
473 COG0270 Dcm Site-specific DNA 42.1 86 0.0019 30.5 7.1 123 218-349 4-141 (328)
474 PRK10083 putative oxidoreducta 42.0 2.1E+02 0.0045 27.2 9.8 93 218-319 162-260 (339)
475 PF11312 DUF3115: Protein of u 41.7 30 0.00066 33.6 3.7 44 280-323 200-247 (315)
476 cd08274 MDR9 Medium chain dehy 41.4 2.2E+02 0.0047 27.1 9.8 89 218-318 179-273 (350)
477 PRK12921 2-dehydropantoate 2-r 41.2 2.4E+02 0.0053 26.5 10.0 91 219-317 2-101 (305)
478 PRK10310 PTS system galactitol 41.1 55 0.0012 25.7 4.6 13 223-235 7-19 (94)
479 PF03446 NAD_binding_2: NAD bi 40.8 1.1E+02 0.0024 26.2 6.9 86 219-318 3-94 (163)
480 PRK08306 dipicolinate synthase 40.3 1.2E+02 0.0026 29.1 7.7 89 217-318 152-241 (296)
481 cd08240 6_hydroxyhexanoate_dh_ 40.1 1.7E+02 0.0037 28.0 8.9 90 218-319 177-275 (350)
482 COG0863 DNA modification methy 39.6 64 0.0014 30.4 5.7 50 299-365 80-129 (302)
483 KOG2352 Predicted spermine/spe 39.3 56 0.0012 33.7 5.3 105 218-323 297-421 (482)
484 PRK08507 prephenate dehydrogen 39.0 1.6E+02 0.0035 27.6 8.3 83 220-314 3-87 (275)
485 cd08246 crotonyl_coA_red croto 38.8 2.8E+02 0.0061 27.2 10.3 92 218-319 195-316 (393)
486 PF03686 UPF0146: Uncharacteri 37.8 52 0.0011 27.7 4.0 88 218-319 15-103 (127)
487 cd08260 Zn_ADH6 Alcohol dehydr 36.1 2.1E+02 0.0046 27.3 8.8 92 218-319 167-265 (345)
488 TIGR00872 gnd_rel 6-phosphoglu 35.9 2.5E+02 0.0054 26.7 9.2 90 220-320 3-94 (298)
489 cd08265 Zn_ADH3 Alcohol dehydr 35.7 2.3E+02 0.005 27.8 9.1 93 218-319 205-308 (384)
490 PF08351 DUF1726: Domain of un 35.4 61 0.0013 25.5 3.9 42 278-323 9-50 (92)
491 TIGR02819 fdhA_non_GSH formald 34.5 3.3E+02 0.0072 27.0 10.1 100 218-320 187-301 (393)
492 cd08291 ETR_like_1 2-enoyl thi 34.5 1.5E+02 0.0033 28.1 7.4 82 227-319 156-243 (324)
493 cd08286 FDH_like_ADH2 formalde 34.2 3E+02 0.0066 26.1 9.6 92 218-319 168-267 (345)
494 KOG0821 Predicted ribosomal RN 34.2 67 0.0015 29.9 4.5 31 218-248 52-82 (326)
495 PLN02702 L-idonate 5-dehydroge 34.0 3.4E+02 0.0074 26.2 10.0 93 218-319 183-286 (364)
496 PRK05708 2-dehydropantoate 2-r 32.7 4E+02 0.0087 25.4 10.0 95 218-320 3-106 (305)
497 PRK14756 hypothetical protein; 32.4 47 0.001 20.2 2.1 24 18-41 4-27 (29)
498 cd08282 PFDH_like Pseudomonas 32.4 2.6E+02 0.0056 27.3 8.8 98 218-319 178-286 (375)
499 PF07101 DUF1363: Protein of u 31.0 19 0.0004 28.7 0.3 17 220-236 6-22 (124)
500 PRK13705 plasmid-partitioning 30.9 23 0.0005 35.5 1.1 60 14-74 30-94 (388)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.2e-66 Score=510.08 Aligned_cols=266 Identities=41% Similarity=0.778 Sum_probs=249.2
Q ss_pred CcccCcCchhhhhc--CccccchhhcCCCCCCCCCCcccCCCCCCCCCCCCCCCccccccccccCchhhhcccccccccc
Q 017377 95 NFVPCYNVSANLLA--GFKEGEEFDRHCGMSGLGDRCLVRPPKDYKIPLRWPAGRDVIWSANVKITKDQFLSSGSMTKRL 172 (372)
Q Consensus 95 ~~~pc~d~~~~~~~--~~~~~~~~~r~c~~~~~~~~cl~~~p~~~~~p~~wp~s~d~~W~~nv~~~~~~~l~~~~~~~~~ 172 (372)
|||||+|+++++++ ++++++|+|||||+.+++.+||+|+|+||+.|++||+|||++|++|+||++ |...+..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999998 899999999999998999999999999999999999999999999999998 7778899999
Q ss_pred cccccceeeecCCCcccccchhHHHHHHHHHHcc--CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCC
Q 017377 173 MLLEENQIAFHSEDGLVFDGVKDYSRQIAEMIGL--GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEAT 250 (372)
Q Consensus 173 ~~~~~~~~~F~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s 250 (372)
+..+++.+.|+++++.+.+++..|+++|.++++. ..+ .++++||||||+|+|+++|+++++.+++++..|.+
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g------~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~ 151 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGG------GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEH 151 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCC------ceEEEEeccceeehhHHHHhhCCceEEEcccccCC
Confidence 9999999999996665558999999999999987 333 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc
Q 017377 251 GSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR 330 (372)
Q Consensus 251 ~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~ 330 (372)
++++|+|.+||+++++..+..++||||+++||+|||+.|++.|.++.+.+|.|++|+|||||+|+++.|+.+.+. ..
T Consensus 152 ~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~---~~ 228 (506)
T PF03141_consen 152 EAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT---DE 228 (506)
T ss_pred chhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccc---hH
Confidence 999999999999999998889999999999999999999999998888899999999999999999999888422 23
Q ss_pred hhhHHHHHHHHHHHhcCeeEEeeecceEEEEecCCCcccccC
Q 017377 331 KNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVDAHCYTSR 372 (372)
Q Consensus 331 e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~~~~cy~~~ 372 (372)
+..++|+.+++++++|||++++++++++|||||.+++||.+|
T Consensus 229 ~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r 270 (506)
T PF03141_consen 229 DLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKR 270 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhc
Confidence 778999999999999999999999999999999999999886
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=6.9e-19 Score=162.70 Aligned_cols=120 Identities=24% Similarity=0.272 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~~~~ 268 (372)
..|-+.+.+.+...++ .+|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.+..
T Consensus 37 ~~Wr~~~i~~~~~~~g--------~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 37 RLWRRALISLLGIKPG--------DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred HHHHHHHHHhhCCCCC--------CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 3445555555554444 8999999999999999998854 67899999999999999988443 66788
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+|++.|||+|++||+|.+++++.++ ++...+|+|++|||||||.+++.+.....
T Consensus 108 ~dAe~LPf~D~sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 108 GDAENLPFPDNSFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred echhhCCCCCCccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 8999999999999999999997777 68888999999999999999988765543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=2.8e-18 Score=159.36 Aligned_cols=104 Identities=28% Similarity=0.341 Sum_probs=79.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||||.++..++++......|+++|+|+.|++.|+++ +. ++.+...|++.+|+++++||+|+|++++.+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn 128 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN 128 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence 7999999999999999988744456899999999999999876 22 577888899999999999999999998777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ ++...+|+|++|+|||||.+++.+....
T Consensus 129 ~-~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 129 F-PDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp --SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred h-CCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 6 6778899999999999999998876443
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.73 E-value=1.7e-17 Score=130.68 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=79.3
Q ss_pred EEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC--eEEEEeeccCCCCCCCCccEEEeccccccccccHH
Q 017377 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEG 298 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~ 298 (372)
||+|||+|.++..++++ ....++++|+++.+++.++++... ..+...+...+|+++++||+|++..+++|+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 346799999999999999987543 447778899999999999999999887777 8888
Q ss_pred HHHHHHHhcccCCeEEEE
Q 017377 299 IFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 299 ~~L~el~rvLkPGG~lvi 316 (372)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.71 E-value=1.5e-16 Score=150.47 Aligned_cols=105 Identities=20% Similarity=0.136 Sum_probs=88.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--------CCeEEEEeeccCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--------l~~~~~~~d~~~lp~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++++......++|+|+|+.|++.|+++. .++.+...++..+|+++++||+|+++++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~ 154 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG 154 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc
Confidence 78999999999999988876322357999999999999997652 1456777888999999999999999988
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++++ +++..++.|+.|+|||||++++.+.....
T Consensus 155 l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 155 LRNV-VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cccC-CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 7666 67888999999999999999999876543
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=4.3e-16 Score=142.27 Aligned_cols=102 Identities=26% Similarity=0.377 Sum_probs=89.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||-|.++..|+..| ..|+|+|.++.+|+.|+.+ ++.+.+....++++....++||+|+|..+++|.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 789999999999999999987 6699999999999988854 555556666667776666899999999999998
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+++..+++.+.+++||||.+++++++...
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 88888999999999999999999998665
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.65 E-value=4e-15 Score=140.84 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeec
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFIS 271 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~ 271 (372)
...+.+.+.+...++ .+|||||||+|..+..+++.. ...++++|+|+.+++.|+++.. .+.+...|.
T Consensus 39 ~~~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~ 108 (263)
T PTZ00098 39 EATTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI 108 (263)
T ss_pred HHHHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc
Confidence 345566666666665 789999999999999887652 3579999999999999998632 356667777
Q ss_pred cCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...|+++++||+|++..+++|+. .+...+|+++.++|||||+++++++...
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78899999999999988888875 3677899999999999999999987543
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=2.4e-15 Score=141.10 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=88.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.....+...|...+|+++++||+|+++.+ ++|..+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d 118 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGN 118 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCC
Confidence 3689999999999999988764 468999999999999998865555666788889999999999999876 567788
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+..+|.++.++|+|||.++++.+....
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 889999999999999999999876543
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=7.5e-15 Score=143.93 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..|++.. ...++|+|+|+.|++.|+++ ++ ++.+...|+..+|+++++||+|++..++
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3789999999999999999863 35799999999999887764 44 3667778888999999999999999888
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+|+ .+...++.++.|+|||||.+++++...
T Consensus 197 ~h~-~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM-PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc-CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 887 667789999999999999999987643
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.63 E-value=3.6e-15 Score=136.46 Aligned_cols=133 Identities=23% Similarity=0.211 Sum_probs=106.3
Q ss_pred ccccchhHHHHHHHHHHccCCCchhh--------hcCCCeEEEeCCCCcHHHHHHHhcCCc-----eeEEEEeeCCHHHH
Q 017377 188 LVFDGVKDYSRQIAEMIGLGTDSEFL--------QAGVQSVLDVGCGFGSFGAHLVSLKLM-----AVCVAVYEATGSQV 254 (372)
Q Consensus 188 ~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~~~~VLDIGCG~G~~~~~L~~~~~~-----~~~v~gvD~s~~~v 254 (372)
+.|+....+++.+.+.+.++..+.|. .....++||++||||..+..++++-.. ...|+..|+++.|+
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 45666666677777777766554443 223479999999999999999886322 26789999999999
Q ss_pred HHHHHcC----C----CeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 255 QLALERG----L----PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 255 ~~A~~rg----l----~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+++|. + .+.+...|+++|||++.+||+.++++++..+ .++.++|+|++|||||||.|.+-..+.
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 8877663 3 2567888999999999999999999998888 777889999999999999999877643
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=5.3e-15 Score=139.21 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=87.9
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
...+.+.+....+ .+|||||||+|.++..+++.. ....++|+|+|+.|++.|+++++.+. ..|+..++
T Consensus 18 ~~~ll~~l~~~~~--------~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~~~~--~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVGAERA--------RRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGVDAR--TGDVRDWK- 85 (255)
T ss_pred HHHHHHhCCCCCC--------CEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCCcEE--EcChhhCC-
Confidence 3445555554443 789999999999999998874 23579999999999999998765544 44566664
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++||+|+|+.+++|. +++..++.++.++|||||++++..+.
T Consensus 86 ~~~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCCceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 56899999999875554 77788999999999999999998654
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=8.9e-15 Score=141.89 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----C--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----L--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
..+|||||||+|.++..|+..+ ..|+|+|+++.+++.|+++. . .+.+...+++++++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3689999999999999998764 46899999999999998651 1 3556677778888888999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCC------------CC-CCcchh----hHHHHHHHHHHHhcCeeEEee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPR------------GS-SSSRKN----KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~------------~~-~~~~e~----~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+|+ .++..++.++.++|||||.+++++++.... .. .+...+ .-.-+++..+.+..++++...
T Consensus 209 eHv-~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHV-ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred Hhc-CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 887 677789999999999999999998765420 00 011000 112355677778888887755
Q ss_pred e
Q 017377 354 Q 354 (372)
Q Consensus 354 ~ 354 (372)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.60 E-value=6.4e-15 Score=127.55 Aligned_cols=125 Identities=27% Similarity=0.466 Sum_probs=93.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.+. .++++|+++.+++. ........+....+.++++||+|+|+.+++|. +++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~-~d~ 94 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL-PDP 94 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS-SHH
T ss_pred CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhc-ccH
Confidence 7999999999999999988764 69999999999988 33344444444556788999999999987777 578
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCC--cchhhHHHHHHHHHHHhcCeeEE
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP---------RGSSS--SRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~--~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
..+|.++.++|||||+++++++.... ....+ .....-.-+.+..+.++.+++++
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 88999999999999999999997642 00000 00111123456667777888766
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=2.9e-14 Score=129.08 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=95.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++.++++++ ..|+++|+|+.+++.++++ ++++.....+....+++ ++||+|+++.+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 689999999999999999875 4689999999999876543 55555555555555554 679999999877666
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeCCCCCC-CCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSPESKPR-GSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~-~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
. ++...++.++.++|+|||++++........ ...++.......+++..+.. .|+.+.-......|.|..
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~ 178 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATD 178 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccc
Confidence 4 344579999999999999966654322111 11111122233344444444 388777666666676654
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.59 E-value=9.8e-15 Score=135.20 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=76.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||||||+|.++..+++.. ...++|+|+|+.|++.|+++. .....++..+|+++++||+|+++++++|+ +++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~-~d~ 126 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS-DNI 126 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc-CCH
Confidence 689999999999999998873 257999999999999998763 23456788899999999999999987655 788
Q ss_pred HHHHHHHHhcccCCe
Q 017377 298 GIFLIEADRLLKPGG 312 (372)
Q Consensus 298 ~~~L~el~rvLkPGG 312 (372)
..+++|+.|+|||.+
T Consensus 127 ~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 127 EKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHhcCce
Confidence 889999999999953
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=2.9e-14 Score=131.88 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
..+.+.+.+.+...++ .+|||+|||+|.++..+++.......++++|+++.+++.|+++ ++ .+.+..
T Consensus 31 ~~~~~~~l~~l~~~~~--------~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~ 102 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAG--------TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH 102 (231)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE
Confidence 3344556666655444 7999999999999999987633345799999999999988765 23 355666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.|...+++++++||+|+++.++.+. ++...++.++.++|+|||++++.++..
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred echhcCCCCCCCccEEEEecccccC-CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7777888888999999998775554 677789999999999999999987654
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=4.3e-14 Score=128.16 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=93.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..|++++ ..|+++|+|+.+++.++++ ++. +.+...|...++++ ++||+|+|+.++++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 689999999999999999875 4689999999999887654 443 44555566666664 67999999988665
Q ss_pred ccc-cHHHHHHHHHhcccCCeEEEEEe-CCCCCC--CCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 293 WDK-KEGIFLIEADRLLKPGGYFVLTS-PESKPR--GSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 293 ~~~-~~~~~L~el~rvLkPGG~lvis~-p~~~~~--~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
+.+ +...++.++.++|+|||++++.. ...... ...++.. -.-+++..+.+ +|+.+.......+|.++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~--~~~~el~~~~~--~~~~~~~~~~~~~~~~~~ 179 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFA--FKEGELRRYYE--GWEMVKYNEDVGELHRTD 179 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCc--cCHHHHHHHhC--CCeEEEeeCCHHhhcccc
Confidence 543 45679999999999999966543 221110 0111111 11123344434 688776655556666543
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=8.5e-14 Score=131.03 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=89.2
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
.+.+.+.+....+ .+|||||||+|.++..+++.. ....++++|+|+.|++.|+++...+.+...|...++
T Consensus 20 ~~~ll~~~~~~~~--------~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~- 89 (258)
T PRK01683 20 ARDLLARVPLENP--------RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHhhCCCcCC--------CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-
Confidence 4445555544433 789999999999999998874 346799999999999999988655666666666554
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++||+|+++.++ ||..+...++.++.++|||||.+++..+.
T Consensus 90 ~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 90 PPQALDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCCccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 45799999999875 45577788999999999999999998654
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.55 E-value=3.6e-14 Score=123.00 Aligned_cols=102 Identities=24% Similarity=0.339 Sum_probs=84.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
..+|||+|||+|.++..+++.......++|+|+|+.|++.|+++ +++ +.+...|+.+++ ++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 37899999999999999995422346699999999999998874 554 778888888877 66 89999999977
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++++ .++..+++++.++|++||.++++++.
T Consensus 83 l~~~-~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF-PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT-SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc-cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6554 77778999999999999999999886
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=1.8e-13 Score=127.60 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|.++..++++. .....++|+|+|+.|++.|+++ ..++.+...|...++++ .+|+|+++.++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecch
Confidence 689999999999999998762 2346799999999999998875 22456777777777765 48999999887
Q ss_pred ccccc-cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDK-KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~-~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++.+ +...++.++.++|+|||.++++++..
T Consensus 133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 66643 34679999999999999999998744
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=7e-14 Score=128.93 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=87.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-CeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.+|||||||+|.++..+++.+. ...++++|+++.+++.++++.. ++.+...|....++++++||+|+++.+++ +..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~-~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ-WCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh-hcc
Confidence 36899999999999999998864 3558999999999999887643 34566677888888899999999998754 447
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++..++.++.++|+|||.++++++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 7888999999999999999999876543
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.53 E-value=1.5e-13 Score=126.50 Aligned_cols=117 Identities=27% Similarity=0.351 Sum_probs=95.0
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEee
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFI 270 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d 270 (372)
.+.+.+.+.+...++ .+|||+|||+|.++..+++.......++++|+++.+++.++++ +..+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 6 RYRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred HHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc
Confidence 345556666666554 7899999999999999988642345799999999999999876 2345566667
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...+++++++||+|++..++.|+ .++..+++++.++|+|||++++.++.
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 77788888999999999887776 67778999999999999999998865
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=2.9e-13 Score=131.97 Aligned_cols=134 Identities=23% Similarity=0.149 Sum_probs=98.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+...|...+++++++||+|+++.+++++ +
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~-~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW-P 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-C
Confidence 689999999999998888753 2357899999999999998763 23455667788889999999999999887776 6
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchh------hHHHHHHHHHHHhcCeeEEeeec
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKN------KSLLKVMEEFTEKICWSLIAQQD 355 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~------~~~w~~i~~l~~~lcw~~~~~~~ 355 (372)
++..+|+++.++|+|||.+++..+....... .... ....+++.++.++.+|+.+..+.
T Consensus 193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~--~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DPQRGIKEAYRVLKIGGKACLIGPVHPTFWL--SRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEecCcchhH--HHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 6778999999999999999987653321000 0000 01124556677888888765543
No 24
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.53 E-value=7.2e-14 Score=132.84 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=82.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc--eeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM--AVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~--~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.... ...++|+|+|+.+++.|.++..++.+...+...+|+++++||+|++... +
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-----~ 161 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-----P 161 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----C
Confidence 67999999999999999876322 2368999999999999998876777777888899999999999998643 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
..+.++.|+|||||++++..|+..+
T Consensus 162 ---~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 162 ---CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ---CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 1468999999999999999887654
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=6.8e-14 Score=131.71 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=83.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC-CCCCCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP-YPSLSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp-~~~~sFDlV~~~~~ 289 (372)
+.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ ++ .+.+...++..++ +++++||+|+|..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3689999999999999999875 4689999999999988875 33 3456666666653 66789999999988
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
++++ .++..++.++.++|||||++++..++..
T Consensus 122 l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 122 LEWV-ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 6665 6777899999999999999998876543
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.53 E-value=1e-13 Score=123.25 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=102.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|||+|||.|.+..+|.+. ......|+|++++.+..+.++|+++..++++..--.|++++||.|+++.++.++ .++
T Consensus 15 srVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-~~P 91 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-RRP 91 (193)
T ss_pred CEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-hHH
Confidence 68999999999999999885 345678999999999999999999999988654445999999999999998887 778
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCCcc------------hhhHHHHHHHHHHHhcCeeEEee
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP---------RGSSSSR------------KNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~~~------------e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+|.||.|+ |...+++.||..+ +.++|.. -+.-...+++++++.++.++.-+
T Consensus 92 ~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 92 DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 8899999666 7788999999866 2333322 12233455677777777776644
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.52 E-value=9.5e-14 Score=113.44 Aligned_cols=100 Identities=26% Similarity=0.321 Sum_probs=77.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------CCeEEEEeec-cCCCCCCCCccEEEecc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFIS-RQLPYPSLSFDMVHCAQ-C 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------l~~~~~~~d~-~~lp~~~~sFDlV~~~~-~ 289 (372)
.+|||||||+|.++..++++. ....++++|+|+.+++.|+++. .++.+...|. ..... .+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 689999999999999999932 2356999999999999988763 3567777776 33333 35699999997 4
Q ss_pred ccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWD--KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~--~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..++. ++...++.++.+.|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 33332 4556799999999999999999863
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=1.4e-13 Score=140.84 Aligned_cols=103 Identities=25% Similarity=0.318 Sum_probs=87.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CC--CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
..+|||||||+|..+..+++.. ...++|+|+|+.+++.|+++ +. .+.+...|...+++++++||+|+|..+++|
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3689999999999999888763 35799999999999999765 22 356777788888888899999999988877
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ .++..++.++.|+|||||.++++++...
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7 6777899999999999999999987543
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=133.62 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=95.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH--Hc----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL--ER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~--~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||+|.++..++..+.. .|+|+|+|+.++..+. ++ ..++.+...++..+|+ +++||+|+|..+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 78999999999999999988643 4899999999886433 22 2346677778888888 78999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC---CCCcchh--------hHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG---SSSSRKN--------KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~---~~~~~e~--------~~~w~~i~~l~~~lcw~~~~~ 353 (372)
|. .++..+|++++++|+|||.+++++....... ..+.... ...-..+..+.++.+++.+..
T Consensus 201 H~-~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HR-RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 76 6777899999999999999999764322211 0010000 011245667778888876644
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=3e-13 Score=126.86 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=81.0
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. .+.+...+...+|++ .+|+|+++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 68999999999999888763 12346799999999999999876 22 356666777777764 49999999887
Q ss_pred cccccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+++.++ ...++.++.++|+|||.|++++...
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 776432 3579999999999999999998543
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=5e-13 Score=128.11 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=78.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++.++++.+ ..|+++|+|+.+++.++++ ++++.....|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999876 4689999999999877643 6666666666655555 6789999999876665
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 D-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ++...+++++.++|+|||++++..+
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4 3445799999999999999777554
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=4.2e-14 Score=114.07 Aligned_cols=93 Identities=27% Similarity=0.350 Sum_probs=74.4
Q ss_pred EEEeCCCCcHHHHHHHhcC--CceeEEEEeeCCHHHHHHHHHcC----CCeEEEEeeccCCCCCCCCccEEEeccc-ccc
Q 017377 220 VLDVGCGFGSFGAHLVSLK--LMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLPYPSLSFDMVHCAQC-GII 292 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~--~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~~d~~~lp~~~~sFDlV~~~~~-~~~ 292 (372)
|||+|||+|..+..+++.. .....++++|+|+.|++.++++. .++.+.+.|...+++.+++||+|+|+++ +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999873 12267999999999999998774 7888999999999988999999999655 566
Q ss_pred ccc-cHHHHHHHHHhcccCCe
Q 017377 293 WDK-KEGIFLIEADRLLKPGG 312 (372)
Q Consensus 293 ~~~-~~~~~L~el~rvLkPGG 312 (372)
+.+ +...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 543 34579999999999998
No 33
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=1.2e-12 Score=119.28 Aligned_cols=100 Identities=19% Similarity=0.045 Sum_probs=80.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc-c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-K 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~-~ 296 (372)
.+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++...+.+...++.. |+++++||+|+++.+++|+.+ +
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHH
Confidence 689999999999999998762 2357999999999999999865455555666666 889999999999999888853 3
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...++.++.|++ ++++++.+...
T Consensus 123 ~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 123 LPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHhhc--CcEEEEEEeeC
Confidence 457899999998 57888877533
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.48 E-value=3.5e-13 Score=130.29 Aligned_cols=132 Identities=17% Similarity=0.111 Sum_probs=94.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--c----CCCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--R----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||+|.++..++..+. ..++|+|+|+.|+..+.. + ...+.+...+..++|.. .+||+|+|+.+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence 7999999999999999988764 358999999999865432 1 12345556667777764 5899999999988
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC--CC-Ccchh--------hHHHHHHHHHHHhcCeeEEee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG--SS-SSRKN--------KSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~--~~-~~~e~--------~~~w~~i~~l~~~lcw~~~~~ 353 (372)
|+ .++..+|++++++|||||.|++.+....... .. +.... ...-..+..+.++.+|+.+..
T Consensus 200 H~-~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 200 HR-KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred cc-CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 87 6777899999999999999999865332211 00 10000 011245667778889887743
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.47 E-value=3.1e-13 Score=128.42 Aligned_cols=114 Identities=29% Similarity=0.383 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
.+..+.+.+.+.+.++ .+|||||||.|.++.+++++. ...|+|+.+|+.+.+.|+++ |+. +.+.
T Consensus 48 ~~k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~ 117 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVR 117 (273)
T ss_dssp HHHHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 3445566666666666 899999999999999999982 35699999999999988754 654 5566
Q ss_pred EeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|..+++. +||.|++..++.|+. .+...+++++.++|+|||.+++....
T Consensus 118 ~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 118 LQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566665543 899999999999996 45678999999999999999987654
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=4.2e-13 Score=126.59 Aligned_cols=117 Identities=24% Similarity=0.267 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~ 267 (372)
..-.+.+.+.+.+.++ .+|||||||.|.++.+++++- ..+|+|+++|++|.+.++++ |+. +.+.
T Consensus 58 ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 58 RAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 4557778888888887 999999999999999999983 36699999999999877764 665 3333
Q ss_pred EeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
-.| .+...+.||-|++...++|+. ++...+++.++++|+|||.+++.+.....
T Consensus 128 l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 128 LQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 223 333345599999999999997 44567999999999999999998765544
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.9e-14 Score=115.39 Aligned_cols=92 Identities=30% Similarity=0.333 Sum_probs=59.3
Q ss_pred EEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C-CCeEEEEeeccCCC-C-CCCCccEEEeccccccc
Q 017377 221 LDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G-LPAMIGNFISRQLP-Y-PSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g-l~~~~~~~d~~~lp-~-~~~sFDlV~~~~~~~~~ 293 (372)
||||||+|.++..+++.. ....++++|+|+.|++.|+++ . .......+...+.. . +.++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999885 568899999999999766655 2 12233333322222 1 22599999999887777
Q ss_pred cccHHHHHHHHHhcccCCeEE
Q 017377 294 DKKEGIFLIEADRLLKPGGYF 314 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~l 314 (372)
++...+++.+.++|+|||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 88889999999999999986
No 38
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.47 E-value=1.6e-13 Score=126.38 Aligned_cols=100 Identities=29% Similarity=0.334 Sum_probs=80.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C---------eEEEEeeccCCCCCCCCccEEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P---------AMIGNFISRQLPYPSLSFDMVH 285 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~---------~~~~~~d~~~lp~~~~sFDlV~ 285 (372)
.++|||+|||.|.++..|+..| ..|+|+|.++.||+.|+++.- | ..+.+.+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 3679999999999999999887 569999999999999998711 1 11222222222 34599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+.+++|. .++..++..+.++|||||.+++++.+...
T Consensus 164 csevleHV-~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 99998888 78888999999999999999999886544
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=9.9e-13 Score=124.85 Aligned_cols=103 Identities=22% Similarity=0.126 Sum_probs=83.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|..+..++........++++|+++.+++.|+++ ++ ++.+...+...+|+++++||+|+++.++ |
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~-~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI-N 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc-c
Confidence 7999999999998877766522335699999999999999875 33 3556666788889988999999998665 4
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+..+...++.++.++|||||.+++++...
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 44677789999999999999999987643
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.45 E-value=5.2e-13 Score=119.70 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=97.5
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY 276 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~ 276 (372)
..++...++.... ++|.|+|||+|..+..|+.+- ....|+|+|.|++|++.|+++.++..+..+|.....
T Consensus 19 a~dLla~Vp~~~~--------~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVPLERP--------RRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCCcccc--------ceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-
Confidence 4456666666554 789999999999999999884 457799999999999999999999999888776654
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 277 PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 277 ~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|+..+|++++|.+ +||.++-..+|..+...|.|||.+.+..|..-
T Consensus 89 p~~~~dllfaNAv-lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 89 PEQPTDLLFANAV-LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CCCccchhhhhhh-hhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 5688999999955 88888878899999999999999999988643
No 41
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.44 E-value=1.2e-12 Score=130.33 Aligned_cols=115 Identities=28% Similarity=0.319 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.. ...|+++|+|+.|++.|+++. +.+.+...+.
T Consensus 153 ~~k~~~l~~~l~l~~g--------~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~ 222 (383)
T PRK11705 153 EAKLDLICRKLQLKPG--------MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence 3445566666666555 799999999999999998762 246999999999999998863 3444444454
Q ss_pred cCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+ +++||.|++..+++|.. .+...++.++.++|||||++++.+...
T Consensus 223 ~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 443 47899999998877774 344679999999999999999987643
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=2.1e-12 Score=116.14 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=90.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..++... ....++++|.++.|++.|+++ +++ +.+...+...++. +++||+|+|+..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence 789999999999999888753 346799999999999887754 443 5667777777776 779999999742
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+...++.++.++|+|||++++..+... -..+.+.++..+|.+...
T Consensus 122 --~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 --ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred --cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeee
Confidence 3456799999999999999999865321 234667777789987654
No 43
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.43 E-value=3.9e-13 Score=134.14 Aligned_cols=124 Identities=19% Similarity=0.455 Sum_probs=106.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD- 294 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~- 294 (372)
..++|+|+.+|.|.|+++|.+..+.+|+|+++ ..++.+....+||+-..+.+. .+.+++.+.+||+||+++.+-.+.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence 56899999999999999999999999999988 567788889999998888776 678888889999999997766653
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 295 -KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 295 -~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+...+|.||+|+|||||+++|. +....-..++.++++|.|+.....
T Consensus 443 rC~~~~illEmDRILRP~G~~iiR-------------D~~~vl~~v~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIR-------------DTVDVLEKVKKIAKSLRWEVRIHD 490 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEe-------------ccHHHHHHHHHHHHhCcceEEEEe
Confidence 44567999999999999999998 445667788999999999988654
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=1.9e-12 Score=119.20 Aligned_cols=100 Identities=29% Similarity=0.340 Sum_probs=81.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+|||||||+|.++..+++... ...++++|+|+.+++.|+++ ++. +.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 699999999999999988742 35689999999999988875 332 45555566555665 58999999988777
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+ .+...++.++.++|+|||+++++++..
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 7 567789999999999999999998753
No 45
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.43 E-value=8.8e-13 Score=124.93 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=80.5
Q ss_pred CCeEEEeCCCCcH----HHHHHHhcCC----ceeEEEEeeCCHHHHHHHHHcC--------C------------------
Q 017377 217 VQSVLDVGCGFGS----FGAHLVSLKL----MAVCVAVYEATGSQVQLALERG--------L------------------ 262 (372)
Q Consensus 217 ~~~VLDIGCG~G~----~~~~L~~~~~----~~~~v~gvD~s~~~v~~A~~rg--------l------------------ 262 (372)
+.+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3689999999995 5555655432 2468999999999999998641 1
Q ss_pred ------CeEEEEeeccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 263 ------PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK-KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 263 ------~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~-~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+.+...|....++++++||+|+|.++++++.+ +...++.++.++|+|||++++...
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 245566677777777899999999988888853 335799999999999999999643
No 46
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.8e-12 Score=115.40 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=84.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCCeE-EEEeeccCCC-CCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAM-IGNFISRQLP-YPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~~~-~~~~d~~~lp-~~~~sFDlV~~~~~~ 290 (372)
..|||||||||..-.++-.. ...+|+++|+++.|-++|.++ ...+. +++++.+++| ++++|+|.|+|..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 46899999999876666433 346799999999998766543 33444 7788889998 899999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
... +++.+.|.++.|+|||||.+++.......
T Consensus 156 CSv-e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 156 CSV-EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ecc-CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 776 88889999999999999999998765543
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=135.60 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=83.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCC--CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP--YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++... ....++|+|+|+.|++.|+++ +.++.+...|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 789999999999998888764 346899999999999998875 344555666777777 8889999999997766
Q ss_pred ccc------------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWD------------KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~------------~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++. .+...+|+++.++|||||.+++.+..
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 552 24467999999999999999998764
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=8.9e-12 Score=111.97 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=90.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.++||+|||.|..+.+|+++|. .|+++|.|+..++. |.+.++++.....|.....++ +.||+|++..++.+.
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 6899999999999999999984 58999999998864 445688888887887777775 689999997666665
Q ss_pred cc-cHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCc-chhhHHHHHHHHHHHhcCeeEEeeecceEEEEe
Q 017377 294 DK-KEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSS-RKNKSLLKVMEEFTEKICWSLIAQQDETFIWQK 362 (372)
Q Consensus 294 ~~-~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~-~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K 362 (372)
.. ....++..|...++|||++++...........|. .+..-.-.++..+.. .|+++.-..+...-+|
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 43 3457899999999999999986543322111000 011111122333323 5998865555554444
No 49
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.39 E-value=8.2e-12 Score=115.26 Aligned_cols=103 Identities=25% Similarity=0.230 Sum_probs=85.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++........++++|+++.+++.++++. .++.+...+...+++++++||+|+++.+++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 68999999999999999887543467999999999999888762 235566667777778788999999988766
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++ .+...+|.++.++|+|||.+++.+...
T Consensus 133 ~~-~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 133 NV-PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cC-CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 55 677789999999999999999876543
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.39 E-value=7.6e-12 Score=114.29 Aligned_cols=102 Identities=26% Similarity=0.248 Sum_probs=84.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+|||+|||+|.++..+++.......++++|+++.+++.++++.. .+.+...+....++++++||+|+++.++++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~- 119 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV- 119 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc-
Confidence 789999999999999998876433579999999999999887642 3456666777788888899999998876555
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+...+++++.++|+|||++++.+..
T Consensus 120 ~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 120 TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 67778999999999999999987753
No 51
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=6.8e-12 Score=111.96 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=74.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+++||+|||.|.++..|+.+. -.++++|+|+..++.|++|- .++.+...+... ..|+++||+|+++.+++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCC
Confidence 789999999999999999873 56899999999999999883 236666665544 35789999999999988885
Q ss_pred c--cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 K--KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~--~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+ +...++..+...|+|||.+++-..
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3 345789999999999999999765
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.35 E-value=1.5e-11 Score=114.09 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=77.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+|||||||+|.++..|++. ......++|+|+|+.|++.|+++. .++.+...+...+++++++||+|+|+.+++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 378999999999998888753 112357999999999999998763 223444455666777788999999999988
Q ss_pred ccccc-HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 292 IWDKK-EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 292 ~~~~~-~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+.++ ...+|+++.|+++ |.+++.+..
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 87543 2469999999998 566666544
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.34 E-value=4.2e-11 Score=106.68 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=86.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++..+. .++++|+++.+++.++++ +..+.+...|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6799999999999999998763 689999999999988764 445555555554432 4689999998665444
Q ss_pred ccc--------------------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKK--------------------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~--------------------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+. ...++.++.++|+|||.+++..+.... -..+.++.++.+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEEE
Confidence 211 235799999999999999998764331 123455556677776654
Q ss_pred e
Q 017377 354 Q 354 (372)
Q Consensus 354 ~ 354 (372)
+
T Consensus 164 ~ 164 (179)
T TIGR00537 164 A 164 (179)
T ss_pred E
Confidence 4
No 54
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=2.2e-11 Score=111.98 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMI 266 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~ 266 (372)
...+.+.+.+.+..... ...+|||||||+|.++..+++.+ ..++|+|+++.+++.|+++ +. .+.+
T Consensus 38 ~~~~~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~ 108 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPL------KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEF 108 (219)
T ss_pred HHHHHHHHHHHHhcCCC------CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence 34455556666652111 23789999999999999998874 4689999999999988875 22 3556
Q ss_pred EEeeccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCC------CCCC-----CcchhhH
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKP------RGSS-----SSRKNKS 334 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~------~~~~-----~~~e~~~ 334 (372)
...+...++ ++||+|++..+++|+. ++...++.++.+++++++++.+....... .... +......
T Consensus 109 ~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T TIGR02021 109 EVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLH 185 (219)
T ss_pred EECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEe
Confidence 666665554 7899999998887875 34567899999999987776654221100 0000 0000111
Q ss_pred HHHHHHHHHHhcCeeEEeee
Q 017377 335 LLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 335 ~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-+.++.+.+..+|+.+..+
T Consensus 186 ~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 186 PMTDLERALGELGWKIVREG 205 (219)
T ss_pred cHHHHHHHHHHcCceeeeee
Confidence 23456777788889888654
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.32 E-value=6.3e-12 Score=114.41 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=79.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeec-cCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFIS-RQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~-~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++.. ....++++|+|+.+++.|+++ ++ ++.+...++ ..++ +++++||+|++++.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 689999999999999998764 335799999999999988764 33 356676776 6666 77889999999754
Q ss_pred cccccc--------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDK--------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~--------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|.. ....++.++.++|+|||+++++.++
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 23321 1246899999999999999998764
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=3.9e-11 Score=99.28 Aligned_cols=97 Identities=24% Similarity=0.181 Sum_probs=73.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC-CCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ-LPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~-lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.... ..++++|+++.+++.++++ +. ++.+...+... ++...++||.|++.....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 68999999999999999987433 6799999999999887653 33 24444444433 333346899999975422
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+++++.++|+|||++++...
T Consensus 100 ----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 ----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 234689999999999999999753
No 57
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=2.4e-11 Score=109.26 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=92.5
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC--eEE
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP--AMI 266 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~--~~~ 266 (372)
+........+...+.+.+..+ .+.-|||||||+|..+..|.+.| ..++|+|+|+.|++.|.++.+. ...
T Consensus 29 i~~IQ~em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil 99 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLIL 99 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeee
Confidence 333334445555566655543 44789999999999999998876 4488999999999999987665 445
Q ss_pred EEeeccCCCCCCCCccEEEecccccccc-------ccH----HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 267 GNFISRQLPYPSLSFDMVHCAQCGIIWD-------KKE----GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 267 ~~~d~~~lp~~~~sFDlV~~~~~~~~~~-------~~~----~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++. +-+||.+++||.|++... +.|. .++ ..++..++.+|++|+..++...+.+.
T Consensus 100 ~DMG-~GlpfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 100 CDMG-EGLPFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred eecC-CCCCCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 5553 779999999999999744 5663 122 24677899999999999999876544
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=1.3e-11 Score=126.19 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=81.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEeecc--CCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFISR--QLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d~~--~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..|++.+ ..++++|+++.+++.+.+.. .++.+...++. .+|+++++||+|+|+.+++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 689999999999999999874 36899999999998876542 23445555553 57788899999999988777
Q ss_pred cccc-HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKK-EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~-~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
+.++ ...++.++.++|||||++++.+...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 7543 4579999999999999999987544
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.31 E-value=3.5e-11 Score=110.44 Aligned_cols=100 Identities=21% Similarity=0.031 Sum_probs=77.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCC----------------CeEEEEeeccCCCCC-CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGL----------------PAMIGNFISRQLPYP-SL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl----------------~~~~~~~d~~~lp~~-~~ 279 (372)
.+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. ++++ .+.+.+.|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 6899999999999999999874 5999999999999753 3333 344556666665532 46
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCC
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.||.|+-..+++|++++. ..++..+.++|||||++++.+..
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 799999987878886544 46899999999999987766543
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=3.6e-11 Score=110.10 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=71.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..+++.......|+++|+++ |. ...++.+.+.|+...+ +.+++||+|+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 6899999999999999998754446799999988 21 1123556666666643 66789999999754
Q ss_pred cccccccH-----------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 290 GIIWDKKE-----------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 290 ~~~~~~~~-----------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.++..++ ..+|.++.++|+|||.|++.....
T Consensus 127 -~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 127 -PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 3332221 358999999999999999987643
No 61
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=1.5e-10 Score=102.52 Aligned_cols=113 Identities=23% Similarity=0.262 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeec
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFIS 271 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~ 271 (372)
.+.+.+.+..... .+|||+|||+|..+..++..+.. ..++++|+++.+++.++++ ++. +.+...|.
T Consensus 20 t~lL~~~l~~~~~--------~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~ 90 (170)
T PF05175_consen 20 TRLLLDNLPKHKG--------GRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHHTT--------CEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST
T ss_pred HHHHHHHHhhccC--------CeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc
Confidence 4455555554333 68999999999999999988654 5599999999999988764 555 55555544
Q ss_pred cCCCCCCCCccEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 272 RQLPYPSLSFDMVHCAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +.++++||+|+|+--++.-.. -...++.+..+.|+|||.+++...
T Consensus 91 ~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 32 344789999999854222222 134689999999999999988765
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=4e-11 Score=109.35 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=79.9
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEe
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNF 269 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~ 269 (372)
....+.+.+...++ .+|||||||+|..+..+++.......++++|+++.+++.|+++ ++. +.+...
T Consensus 60 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 60 MVAMMCELIEPRPG--------MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34556666655554 7899999999999988887632234699999999999888764 432 456666
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|........++||+|++..+..+. ..++.++|+|||.+++...
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEEc
Confidence 665544456799999998765443 3578899999999988653
No 63
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.29 E-value=2.3e-11 Score=115.14 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=92.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH---HHHc-CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL---ALER-GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~---A~~r-gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
++|||||||.|.++..|+.+|. ..|+|+|.+....-. +++- |.. +.......+.+|. .++||+|+|.++++
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 8999999999999999999875 468999999866532 2221 222 2333356788887 78999999999999
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCC-----------CCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGS-----------SSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~-----------~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
|. .+|-..|.+++..|+|||.+++.+........ ++..-....-..+..+.++.+|+-+.
T Consensus 194 Hr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 194 HR-RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred cc-CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 97 77777999999999999999986653322100 00001112245567777888887653
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=9.5e-11 Score=104.91 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=73.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..++.... ...++++|.++.|++.++++ ++ ++.+...++..++ .+++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 7899999999999999876542 35699999999998776543 55 3666777777664 357999999874 2
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++..+.++|+|||.+++...
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2334578889999999999998853
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=1.2e-10 Score=114.20 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~ 269 (372)
+.-.+.+.+.++.... .+|||+|||+|.++..++++.. ...++++|+|+.+++.|+++ ++...+...
T Consensus 182 D~gt~lLl~~l~~~~~--------g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~ 252 (342)
T PRK09489 182 DVGSQLLLSTLTPHTK--------GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFAS 252 (342)
T ss_pred CHHHHHHHHhccccCC--------CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEc
Confidence 3334556666654332 5799999999999999998753 35699999999999888753 555555444
Q ss_pred eccCCCCCCCCccEEEecccccccc----ccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWD----KKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~----~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|... ..+++||+|+|+..++... .....++.++.++|+|||.++++...
T Consensus 253 D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 253 NVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 4332 2367899999997644321 22357899999999999999998763
No 66
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=6.8e-11 Score=106.73 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=89.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-C-CCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-PYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-l-p~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|||||||+|.++..+++.. ...++++|+++.+++.|+++++..... +... + ++++++||+|+|+.+++|+ .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~--d~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQG--DLDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEE--EhhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 589999999999999887653 235689999999999998877665544 4433 4 4778899999999887666 6
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC---------CCCCC------------cchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP---------RGSSS------------SRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~---------~~~~~------------~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
++..+|+++.|++++ .+++.|+... ....+ +.......+.+..+.+..+++++...
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 777899999887654 4555444311 00000 00122345667778888888887543
No 67
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.25 E-value=1.3e-11 Score=112.58 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=71.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCe------EEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPA------MIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~------~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
+.++|+|||+|..+..++++- -.|+|+|+|++|++.|++..... ...+.++..|--.++|.|+|+|..| .
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-V 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-H
Confidence 589999999997676666652 45889999999999998753221 1222222233334899999999998 7
Q ss_pred cccccHHHHHHHHHhcccCCe-EEEEEeCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGG-YFVLTSPE 320 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG-~lvis~p~ 320 (372)
|| -+...+.++++|+||+.| .+.+-..+
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 88 556669999999999876 66655544
No 68
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.24 E-value=2.7e-10 Score=110.10 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..++++.+ ...++++|. +.+++.++++ ++. +.+...|....++++ +|+|+++++++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh 226 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILY 226 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhh
Confidence 7999999999999999998864 356889997 6888877654 443 445556665556653 69999988888
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 292 IWDKKE-GIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 292 ~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+|.++. ..+|++++++|+|||.+++.+....
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 886543 5799999999999999999986443
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.24 E-value=9.3e-11 Score=108.60 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=80.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCC-CCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLP-YPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +..+.+...+....+ ..++.||+|++..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 689999999999999998874 4589999999999988765 444455555555544 34579999999988776
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. .++..+|.++.++|+|||.++++.+..
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6 667779999999999999999987753
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=107.08 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.++..+++.......++++|+++.+++.|+++ ++ ++.+..
T Consensus 62 p~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred HHHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3455566666666665 7999999999999998887633345799999999999988865 44 356666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|....+.+.+.||+|++.....+ +...+.+.|||||.+++...
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEEc
Confidence 676655556789999999765333 23467778999999998643
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.23 E-value=1.4e-10 Score=114.81 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC----CeE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL----PAM 265 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl----~~~ 265 (372)
+.-.+.+.+.++.... .+|||+|||+|.++..++++++ ...++++|+|+.+++.|+++ +. .+.
T Consensus 214 D~GtrllL~~lp~~~~--------~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 214 DIGARFFMQHLPENLE--------GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred ChHHHHHHHhCCcccC--------CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence 3345567777765433 5899999999999999998864 36799999999999998865 22 223
Q ss_pred EEEeeccCCCCCCCCccEEEeccccccc---ccc-HHHHHHHHHhcccCCeEEEEEe
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIW---DKK-EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~---~~~-~~~~L~el~rvLkPGG~lvis~ 318 (372)
+...|... .+++++||+|+|+-.++.. .++ ...++.++.++|+|||.++++.
T Consensus 285 ~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 285 FMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33333221 2345689999998553322 111 2468999999999999999995
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.23 E-value=4e-11 Score=108.40 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=78.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC---CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp---~~~~sFDlV~~~~~ 289 (372)
.+|||||||+|.++..++.+.. ...++|+|+++.+++.|+++ ++ ++.+...|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 6899999999999999998754 36799999999999887654 33 4566666665543 56679999998854
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|.... ..++.++.++|||||.+++.+..
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4443221 35899999999999999998653
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=3.6e-10 Score=101.37 Aligned_cols=115 Identities=22% Similarity=0.139 Sum_probs=81.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||||||+|.++..+++... ...++++|+++.+++.|+++ ++ .+.+...+.. .++ .++||+|++.....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~- 108 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGG- 108 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCcc-
Confidence 7899999999999999988753 36799999999999988764 33 2444444432 233 36899999975422
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
....++.++.++|+|||++++....... ...+..+.++.+++.+
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~------------~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILLEN------------LHSALAHLEKCGVSEL 152 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecHhh------------HHHHHHHHHHCCCCcc
Confidence 2345889999999999999997653221 2344455566666543
No 74
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.23 E-value=1.2e-11 Score=111.87 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=96.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CC-CCCCCccEEEecccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-YPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp-~~~~sFDlV~~~~~~~~~~ 294 (372)
-+++||+|||||.++..|.+. ...++|+|+|++|++.|.++++--...+.+... ++ ..++.||+|++..++..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl- 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL- 201 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh-
Confidence 378999999999999998876 245899999999999999998754433333332 22 456889999999886655
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC---CcchhhHHHHHHHHHHHhcCeeEEeeecc
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKNKSLLKVMEEFTEKICWSLIAQQDE 356 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~~~~w~~i~~l~~~lcw~~~~~~~~ 356 (372)
-+.+.++.-+...|+|||.|.+|.-........ |.......-.-+.+..+..+.+++.....
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 556668899999999999999997544332211 11111122333556667778888766543
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=2.2e-10 Score=109.98 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=72.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++............+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH---
Confidence 7899999999999988887753 4689999999999988875 333222222111234456799999997432
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.....++.++.++|+|||++++++..
T Consensus 236 -~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 -EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 22346899999999999999999863
No 76
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.8e-10 Score=106.32 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=92.9
Q ss_pred eeecCCCcccc--cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH
Q 017377 180 IAFHSEDGLVF--DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA 257 (372)
Q Consensus 180 ~~F~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A 257 (372)
..|.. ...+| +..+.-.+.+.+.++...+ .+|||+|||.|.++..+++..+ ...++.+|++...++.|
T Consensus 129 ~~~~t-~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 129 LTFKT-LPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESA 198 (300)
T ss_pred eEEEe-CCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHH
Confidence 33444 33455 3445556788888887665 4899999999999999999876 46799999999999999
Q ss_pred HHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccccccHH----HHHHHHHhcccCCeEEEEEeC
Q 017377 258 LER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEG----IFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 258 ~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~----~~L~el~rvLkPGG~lvis~p 319 (372)
+++ ++.......+..-.+..+ +||+|+||--++.-..-.. .++.+..+.|++||.|+|+..
T Consensus 199 r~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 199 RKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 875 444322222223344444 9999999965443322222 689999999999999999977
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.22 E-value=1.7e-10 Score=105.99 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEee
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFI 270 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d 270 (372)
....+.+.+...++ .+|||||||+|.++..|++.......++++|+++.+++.|+++ ++ ++.+...|
T Consensus 65 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 65 MVAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 44566666666555 7999999999999999988743345689999999999988765 44 35556566
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..........||+|++.....+ +...+.+.|+|||++++...
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cccCCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEEc
Confidence 5554444568999998755332 34567889999999998754
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.21 E-value=6.8e-10 Score=102.78 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=80.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccC----CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQ----LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~----lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++... ...|+++|+++.|++.+.++ ..++.+...|... .+++ ++||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC-
Confidence 7999999999999999988732 35799999999988754332 1234444445432 1223 56999986522
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.+.....++.++.++|||||.++++.+........ +.....+......+..+++.+..
T Consensus 151 --~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~---~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 151 --QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK---DPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred --ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC---CHHHHHHHHHHHHHHcCCeEEEE
Confidence 11122356899999999999999975432111010 11111222335556668877644
No 79
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=1.8e-10 Score=109.97 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHc-----CC--CeEEEEeeccCCCCCCCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVS-LKLMAVCVAVYEATGSQVQLALER-----GL--PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~r-----gl--~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+++|+|||||.|.++..++. .......++++|.++++++.|++. ++ .+.+...|+.+.+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 348999999998865544433 334556799999999999988864 22 2556666666554335789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++++|. ++...+|..+.+.|+|||++++...
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 888885 6777899999999999999999873
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.20 E-value=1.2e-10 Score=107.05 Aligned_cols=101 Identities=27% Similarity=0.348 Sum_probs=81.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCC-CCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYP-SLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~-~~sFDlV~~~~~~ 290 (372)
..+|||+|||+|.++..+++.+. .++++|.++.+++.++++ ++ ++.+...+....+.+ +++||+|+++.++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36899999999999999887653 488999999999888764 44 355655666555544 3789999999876
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
++. .++..+|.++.++|+|||.+++++++.
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 665 677789999999999999999988654
No 81
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.20 E-value=2.3e-10 Score=110.87 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=83.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC----------CeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL----------PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl----------~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
.+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++.. .+.+...|... .+++||+|+|.
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 689999999999999999875 469999999999999887621 23344444332 35889999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCCC-------CCCC--cc---hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 288 QCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKPR-------GSSS--SR---KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 288 ~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~~-------~~~~--~~---e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+++|+.++. ..++..+.+ +.+||.++...+..... ..++ .. .....-+.++.+.+..+|++....
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 9988885443 245666664 45666644333321110 0000 00 000113556777788889876443
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.20 E-value=9.2e-10 Score=103.47 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=79.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ ++...+ .++..+.+||+|+++...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA--- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH---
Confidence 78999999999999888876542 489999999999988875 331111 112222379999997431
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
.....++.++.++|||||++++++..... .+.+....++.+++....
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~------------~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILEEQ------------ADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcHhh------------HHHHHHHHHHCCCEEEEE
Confidence 22345889999999999999999764321 234455557778876643
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=113.27 Aligned_cols=101 Identities=28% Similarity=0.354 Sum_probs=79.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC--CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l--p~~~~sFDlV~~~~~~ 290 (372)
..+||||||+|.++..++...+ ...++|+|+++.+++.|.++ ++ ++.+...|+..+ .+++++||.|++++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 5899999999999999998864 46799999999998776543 55 355666676543 578999999998754
Q ss_pred ccccccH------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKE------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..|.... ..++.++.|+|+|||.+.+.+-.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 5564322 36899999999999999997653
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=3.5e-10 Score=104.16 Aligned_cols=96 Identities=21% Similarity=0.029 Sum_probs=74.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCC----------------eEEEEeeccCCCCC-CC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLP----------------AMIGNFISRQLPYP-SL 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~----------------~~~~~~d~~~lp~~-~~ 279 (372)
.+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. ++++. +.+.+.|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 6899999999999999999874 5999999999999763 44443 34455566655432 25
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEE
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvi 316 (372)
.||+|+-..+++|.+++. ..++..+.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999887777776444 4799999999999997554
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.17 E-value=1.2e-09 Score=100.87 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=74.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++..+. ..++++|+++.+++.++++ ++++.+...|... .+++++||+|+++--...-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 6899999999999999987642 3689999999999877764 4555555555543 3567899999997332211
Q ss_pred cc--------------------cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 294 DK--------------------KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 294 ~~--------------------~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ....++.++.++|||||.+++.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 01 12357888999999999999876543
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.17 E-value=7.8e-10 Score=100.23 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=72.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccC-CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQ-LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~-lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..++........++++|+++.+++.|+++ ++ ++.+...+... ++..++.||.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~- 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG- 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-
Confidence 7899999999999998876522335699999999999987754 42 34454455543 2333468999998632
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...++.++.++|+|||.+++...
T Consensus 121 ---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 121 ---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 24556799999999999999998655
No 87
>PRK14968 putative methyltransferase; Provisional
Probab=99.17 E-value=1.5e-09 Score=96.65 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=83.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..++..+ ..++++|.++.+++.++++ +.. +.+...|... ++++++||+|+++...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 689999999999999999873 5689999999999888654 332 4444444433 4556689999987543
Q ss_pred cccc--------------------ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeE
Q 017377 291 IIWD--------------------KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSL 350 (372)
Q Consensus 291 ~~~~--------------------~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~ 350 (372)
.+.. .....++.++.++|+|||.+++..+.... -+.+..+.+..+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~------------~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG------------EDEVLEYLEKLGFEA 168 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC------------HHHHHHHHHHCCCee
Confidence 3210 11235789999999999999988753321 123455666677765
Q ss_pred Ee
Q 017377 351 IA 352 (372)
Q Consensus 351 ~~ 352 (372)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 54
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.15 E-value=6.5e-10 Score=108.62 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.....++ .+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+...
T Consensus 169 ~la~~~~~l~~~~~g--------~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~ 237 (329)
T TIGR01177 169 KLARAMVNLARVTEG--------DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG 237 (329)
T ss_pred HHHHHHHHHhCCCCc--------CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence 344455555544444 789999999999988776654 5689999999999887765 443 456677
Q ss_pred eccCCCCCCCCccEEEeccc--c---ccc--c-ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 270 ISRQLPYPSLSFDMVHCAQC--G---IIW--D-KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~--~---~~~--~-~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
|+.++|+++++||+|+++-- . ... . +....++.++.++|+|||++++..|..
T Consensus 238 D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 238 DATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 88889988899999999621 1 010 1 113568999999999999999998754
No 89
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.15 E-value=1.3e-10 Score=95.61 Aligned_cols=100 Identities=33% Similarity=0.412 Sum_probs=77.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+.+ +. ++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 579999999999999999886 47799999999999988875 33 3667777766654 78899999999844
Q ss_pred ccccc-------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWD-------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~-------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..... .....+++++.++|+|||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1124689999999999999999876
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.15 E-value=4.7e-10 Score=103.36 Aligned_cols=91 Identities=26% Similarity=0.289 Sum_probs=69.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||||||+|.++..+++.+. .++++|+|+.+++.|+++ +. .+.+...+ ++..+++||+|++..+++
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 6899999999999999998753 489999999999999875 22 23444443 455678999999998887
Q ss_pred cccc-cHHHHHHHHHhcccCCeEE
Q 017377 292 IWDK-KEGIFLIEADRLLKPGGYF 314 (372)
Q Consensus 292 ~~~~-~~~~~L~el~rvLkPGG~l 314 (372)
|+.. +...++.++.+++++++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEE
Confidence 8753 3346888888877654443
No 91
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.6e-10 Score=107.68 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=82.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEEeeccCCCCCC-CCccEEEeccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQLPYPS-LSFDMVHCAQC 289 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~--~~~~~d~~~lp~~~-~sFDlV~~~~~ 289 (372)
+++|||+|||+|.++...++.|. ..+.|+|+++..++.|+++ +++. ....+ ..+..+. +.||+|++|-.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~--~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGF--LLLEVPENGPFDVIVANIL 238 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc--cchhhcccCcccEEEehhh
Confidence 37999999999999999999875 4588999999999988875 5542 12211 1222333 59999999842
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
. +-...+..++.+.|||||++++|+... .+.+...+.+ ++.+|++...
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~-----------~q~~~V~~a~-~~~gf~v~~~ 286 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILE-----------DQAESVAEAY-EQAGFEVVEV 286 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehH-----------hHHHHHHHHH-HhCCCeEeEE
Confidence 1 223468889999999999999998632 2233333334 5667777644
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=4.7e-10 Score=108.32 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=74.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeeccC-CCCCCCC----ccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------GLPAMIGNFISRQ-LPYPSLS----FDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~~~-lp~~~~s----FDlV~~ 286 (372)
.+|||+|||+|..+..|++.......++++|+|+.|++.|.++ ++++.....|+.+ ++++... ..++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 6799999999999999998743346799999999999888765 2334445566654 3444332 233444
Q ss_pred cccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 287 AQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 287 ~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
...+.++. ++...+|+++.++|+|||.|++......
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 44455554 2344789999999999999998765443
No 93
>PTZ00146 fibrillarin; Provisional
Probab=99.14 E-value=7.3e-10 Score=105.45 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=81.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH----HHHHHHHcCCCeEEEEeeccC---CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS----QVQLALERGLPAMIGNFISRQ---LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~----~v~~A~~rgl~~~~~~~d~~~---lp~~~~sFDlV~~~~~~ 290 (372)
.+|||+|||+|.++..+++.......|+++|+++. +++.|+++ .++.....|+.. ...+..+||+|++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-
Confidence 79999999999999999987333456999999986 45555544 234444444432 2223468999999742
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
. .++...++.++.++|||||+|+|...... .+..++.+.... +++ +..++.+++.+
T Consensus 212 -~-pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~pe~~f~-~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 212 -Q-PDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAKPEVVFA-SEV-QKLKKEGLKPK 267 (293)
T ss_pred -C-cchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCCHHHHHH-HHH-HHHHHcCCceE
Confidence 2 23444577899999999999999543322 233333333333 334 34466666644
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=1e-09 Score=105.18 Aligned_cols=116 Identities=24% Similarity=0.290 Sum_probs=80.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+|||||||+|.++...++.|. ..++++|+++.+++.|+++ ++...+.... ......+.||+|++|-. .
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~---~ 235 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL---A 235 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES----H
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC---H
Confidence 7999999999999999998875 4589999999999988875 5554333221 22344589999999833 1
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
+-...++..+.++|+|||++++|+..... .+.+.+..++ ++++....
T Consensus 236 -~vL~~l~~~~~~~l~~~G~lIlSGIl~~~------------~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 -DVLLELAPDIASLLKPGGYLILSGILEEQ------------EDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp -HHHHHHHHHCHHHEEEEEEEEEEEEEGGG------------HHHHHHHHHT-TEEEEEEE
T ss_pred -HHHHHHHHHHHHhhCCCCEEEEccccHHH------------HHHHHHHHHC-CCEEEEEE
Confidence 22345778899999999999999874321 2333333355 88876543
No 95
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.09 E-value=9.3e-10 Score=86.15 Aligned_cols=97 Identities=32% Similarity=0.341 Sum_probs=73.7
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---C--CCeEEEEeeccCCCC-CCCCccEEEecccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---G--LPAMIGNFISRQLPY-PSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---g--l~~~~~~~d~~~lp~-~~~sFDlV~~~~~~~~ 292 (372)
+|+|+|||+|.++..+++. ....++++|.++.+++.+++. . ....+...+...... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999873 346789999999999888721 1 123444444444442 5678999999987555
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3466677999999999999999986
No 96
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.08 E-value=3.1e-09 Score=95.44 Aligned_cols=96 Identities=20% Similarity=0.089 Sum_probs=68.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|.++..++........++++|+++.+ ....+.+...+..+.+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 789999999999999988774344569999999865 1123444444554432 45678999998643
Q ss_pred cc---cccc-------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GI---IWDK-------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~---~~~~-------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +|.. ....++.++.++|+|||++++...
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 11 1211 124689999999999999999764
No 97
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.08 E-value=3.9e-10 Score=98.90 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=65.2
Q ss_pred EEeeCCHHHHHHHHHcC--------CCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEE
Q 017377 245 AVYEATGSQVQLALERG--------LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 245 ~gvD~s~~~v~~A~~rg--------l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvi 316 (372)
+|+|+|+.|++.|+++. .++.+...|+.++|+++++||+|++.++++++ ++...+|++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 47899999999997542 13567778899999999999999999886666 7888899999999999999999
Q ss_pred EeCCCC
Q 017377 317 TSPESK 322 (372)
Q Consensus 317 s~p~~~ 322 (372)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 887643
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=3.3e-09 Score=98.91 Aligned_cols=100 Identities=26% Similarity=0.335 Sum_probs=73.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ ++. +.+...+... ++++++||+|+|+--...
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 5899999999999999998642 35799999999999988764 443 5555555544 466789999999632111
Q ss_pred ------ccc-------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 ------WDK-------------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ------~~~-------------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.. ....++.++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 100 012568899999999999999753
No 99
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=8.5e-10 Score=100.78 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCC-ceeEEEEeeCCHHHHHHHHHcCC-----
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALERGL----- 262 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~-~~~~v~gvD~s~~~v~~A~~rgl----- 262 (372)
+|.......+++-+.++.... .+.+|||||||.|...-.+++... ....+.+.|.|+.+++..+++.-
T Consensus 50 FfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~ 123 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR 123 (264)
T ss_pred ccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh
Confidence 344444455566666654433 223899999999999988887642 23778999999999999887621
Q ss_pred -CeEEEEeeccC--CCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 263 -PAMIGNFISRQ--LPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 263 -~~~~~~~d~~~--lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+.+.+++... -|.+.+++|+|++.+++...+++. ..++.++.++|||||.+++.+.....
T Consensus 124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 23344443333 356789999999999988876554 47999999999999999999887765
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.06 E-value=9.5e-10 Score=96.40 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=80.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.+...|++.++.. .++|+|.|+.+++.|+. ++.+ +.+.++|+..-.+..+.||+|+--..+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 489999999999999999998763 38999999999987653 3555 6788888877778889999998643322
Q ss_pred cc--c-c----cHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IW--D-K----KEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~--~-~----~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.+ . + .+..++..+.++|+|||+|+|+..+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 22 1 1 11347888999999999999998764
No 101
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.06 E-value=2e-09 Score=96.99 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=73.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
..|-|+|||.+.++..+.. + ..|...|.-.. +.. +...|+..+|++++++|++++. +--|..+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~--------n~~--Vtacdia~vPL~~~svDv~Vfc--LSLMGTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP--------NPR--VTACDIANVPLEDESVDVAVFC--LSLMGTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH--S-------EEEEESS-S--------STT--EEES-TTS-S--TT-EEEEEEE--S---SS-H
T ss_pred EEEEECCCchHHHHHhccc-C---ceEEEeeccCC--------CCC--EEEecCccCcCCCCceeEEEEE--hhhhCCCc
Confidence 5899999999999876542 2 34666676431 212 3345789999999999999985 44556777
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeec-----ceEEEEecCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQD-----ETFIWQKTVD 365 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~-----~~~iw~K~~~ 365 (372)
..++.|..|+|||||.|+|....... + .-+.+....+++++++..+.. -.+.++|..+
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf-------~---~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRF-------E---NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG--------S----HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred HHHHHHHHheeccCcEEEEEEecccC-------c---CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 78999999999999999999764322 1 123334445889999998652 4567777664
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=5.9e-09 Score=94.22 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=75.8
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~ 273 (372)
.+.+.+...++ .+|||+|||+|.++..++... ....++++|.++.+++.++++ ++ ++.+...++..
T Consensus 31 ~l~~~l~~~~~--------~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 31 LLISQLRLEPD--------SVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 45566655444 789999999999999988653 236799999999999988764 43 34455444432
Q ss_pred -CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 274 -lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++.....+|.|+... ..+...++.++.++|+|||++++..+.
T Consensus 102 ~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 222223467765432 234457899999999999999999764
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.01 E-value=6.3e-09 Score=95.16 Aligned_cols=106 Identities=22% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEee
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFI 270 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d 270 (372)
....+.+.+...++ .+|||||||+|.++..+++.. ..++++|+++.+++.|+++ ++. +.+...+
T Consensus 66 ~~~~l~~~l~~~~~--------~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 66 MVARMTELLELKPG--------DRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred HHHHHHHhcCCCCC--------CEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 34455555555444 789999999999998887763 2589999999999888765 342 4555555
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 271 SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
......+.++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 135 ~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 135 GWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 4332223478999999765333 34567899999999999866
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.98 E-value=8.4e-09 Score=104.31 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEE--EEeec
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMI--GNFIS 271 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~--~~~d~ 271 (372)
..+...+...++ .+|||+|||+|..+..+++... ...++++|+++.+++.++++ |+.+.+ .+.+.
T Consensus 228 ~~~~~~L~~~~g--------~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 228 QWVATWLAPQNE--------ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHhCCCCC--------CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 355555655555 7899999999999999988643 46799999999999877655 655333 44454
Q ss_pred cCCCC--CCCCccEEEec----c-cccccccc----------------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 272 RQLPY--PSLSFDMVHCA----Q-CGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 272 ~~lp~--~~~sFDlV~~~----~-~~~~~~~~----------------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...++ +.++||.|++. . +..+-.++ ...+|.++.++|||||.+++++.....
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 44443 56789999952 1 11211121 246899999999999999999887655
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.97 E-value=1.3e-08 Score=93.90 Aligned_cols=110 Identities=15% Similarity=-0.016 Sum_probs=85.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-----------------cCCCeEEEEeeccCCCCC---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-----------------RGLPAMIGNFISRQLPYP--- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-----------------rgl~~~~~~~d~~~lp~~--- 277 (372)
.+||+.|||.|.-+..|+++|. .|+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 6899999999999999999985 48999999999988754 134566777777777642
Q ss_pred CCCccEEEeccccccccccHH-HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc
Q 017377 278 SLSFDMVHCAQCGIIWDKKEG-IFLIEADRLLKPGGYFVLTSPESKPRGSSSSR 330 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~~~~~-~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~ 330 (372)
.+.||+|+-..++++++++.. .+.+.+.++|+|||.+++...........|+.
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf 175 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPY 175 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCC
Confidence 268999998878888875554 78999999999999999877644332333433
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=8.6e-09 Score=104.25 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=82.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQL 274 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~l 274 (372)
.+...+...++ .+|||+|||+|..+..+++.... ..++++|+++.+++.++++ |+.+.+...|+..+
T Consensus 235 ~~~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 235 LAATLLAPQNG--------ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred HHHHHcCCCCC--------CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 44445555444 78999999999999999987532 5799999999999888755 55666666676655
Q ss_pred C--CCCCCccEEEecc----c--c-----cccccc----------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 275 P--YPSLSFDMVHCAQ----C--G-----IIWDKK----------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 275 p--~~~~sFDlV~~~~----~--~-----~~~~~~----------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+ ++.++||.|++.- . + ..|... ...+|.++.++|||||++++++.....
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 4 3467899999532 1 0 011111 235899999999999999999875544
No 107
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.96 E-value=4.2e-09 Score=97.01 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
..|.|+|||.+.++..-. ..|+..|+.. ++-.+...|+.++|.+++|.|++++ |+.-|..+.
T Consensus 182 ~vIaD~GCGEakiA~~~~------~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~--CLSLMgtn~ 243 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSER------HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVF--CLSLMGTNL 243 (325)
T ss_pred eEEEecccchhhhhhccc------cceeeeeeec----------CCCceeeccccCCcCccCcccEEEe--eHhhhcccH
Confidence 579999999998765211 2245556532 2223444578899999999999997 455667888
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee-----cceEEEEecC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ-----DETFIWQKTV 364 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~-----~~~~iw~K~~ 364 (372)
..++.|++|+|+|||.++|....... ..... +..-...++|...... +..+.++|+.
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf-------~dv~~---f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRF-------SDVKG---FVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhc-------ccHHH---HHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 88999999999999999999764333 11111 2223377888876553 4567888876
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=2.6e-08 Score=95.47 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=72.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 6899999999999999998743 35799999999999988865 543 4555555432 3456689999997110
Q ss_pred -----ccc----c--c------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 -----IIW----D--K------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 -----~~~----~--~------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+. . + ....++.++.++|+|||++++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 000 0 0 113578889999999999998765
No 109
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=1e-08 Score=99.71 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|.++..+++.......|+++|.++.+++.|+++ +.. +.+...
T Consensus 67 ~l~a~ll~~L~i~~g--------~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g 138 (322)
T PRK13943 67 SLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG 138 (322)
T ss_pred HHHHHHHHhcCCCCC--------CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 344455555555444 7899999999999999987633223588999999999888763 443 455555
Q ss_pred eccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 270 ISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|....+.+.++||+|++.....+ ....+.+.|+|||.+++..
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 65555545578999999754332 2345678999999998854
No 110
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=95.09 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=75.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~ 289 (372)
.+|||+|||+|..+..++++... ..++++|+++.+.+.|+++ ++ .+.+.+.|..++. ....+||+|+||--
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 78999999999999999988433 7799999999999999875 22 2445555655543 34457999999822
Q ss_pred cccc-----------------cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIW-----------------DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~-----------------~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+.- .-+.+.+++...++|||||++.+..++
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 1111 122345788889999999999999774
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.94 E-value=2.4e-08 Score=94.66 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=71.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----CCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----LPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++.... ...++++|+++.+++.|+++. .++.+...|... ++++++||+|+++--...
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 6899999999999999998752 367999999999999988752 134555555422 334578999999622110
Q ss_pred ------cc-------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 293 ------WD-------------------KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 293 ------~~-------------------~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.. +....++.++.++|+|||++++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 00 112357888889999999999964
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=2.1e-08 Score=101.60 Aligned_cols=116 Identities=22% Similarity=0.173 Sum_probs=83.6
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.+...+...++ .+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..
T Consensus 243 l~~~~l~~~~g--------~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~ 314 (434)
T PRK14901 243 LVAPLLDPQPG--------EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRN 314 (434)
T ss_pred HHHHHhCCCCc--------CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh
Confidence 44445554444 7899999999999999988632335799999999999877654 553 5666667766
Q ss_pred CC----CCCCCccEEEec------ccccccccc----------------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 LP----YPSLSFDMVHCA------QCGIIWDKK----------------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 lp----~~~~sFDlV~~~------~~~~~~~~~----------------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +..++||.|++. +.+.+. ++ ...+|.++.++|||||+++.++.....
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~-p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRH-PDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccC-cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 65 446789999963 121111 11 346799999999999999999876544
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.93 E-value=2.4e-08 Score=99.51 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=81.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCC-CCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYP-SLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~ 292 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ +.++.+...|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 5899999999999999887532 35789999999999988865 44566666665443332 457999999732111
Q ss_pred cc--------------------cc----HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 293 WD--------------------KK----EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 293 ~~--------------------~~----~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
-. ++ ...++.++.+.|+|||.+++..... .-+.+.++.++.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-------------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-------------QGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------HHHHHHHHHHHCCC
Confidence 00 01 1246677788999999998865421 12345666666677
Q ss_pred eEE
Q 017377 349 SLI 351 (372)
Q Consensus 349 ~~~ 351 (372)
..+
T Consensus 399 ~~v 401 (423)
T PRK14966 399 SGV 401 (423)
T ss_pred cEE
Confidence 544
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=8.1e-09 Score=94.43 Aligned_cols=112 Identities=20% Similarity=0.111 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~ 268 (372)
......+.+.+...++ .+|||||||+|.+++.|+........++++|..+..++.|+++ ++ ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4456677788887777 8999999999999999998733445688999999999998876 44 456666
Q ss_pred eeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 269 FISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 269 ~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.|...-.-....||.|++..+.... + ..+.+.|++||++++-...
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i---p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI---P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEESS
T ss_pred cchhhccccCCCcCEEEEeeccchH---H----HHHHHhcCCCcEEEEEEcc
Confidence 6654332245689999998664322 2 3467789999999987654
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1e-08 Score=104.19 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=76.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEec----c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCA----Q 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~----~ 288 (372)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|+..++ ++++||+|++. .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCC
Confidence 7899999999999988887532335799999999999877654 554 456666666654 56789999952 1
Q ss_pred ccc-------cccc----------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGI-------IWDK----------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~-------~~~~----------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
... .|.. ....+|.++.++|||||++++++.....
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 111 1111 1235899999999999999999886654
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.89 E-value=1.3e-08 Score=89.80 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeeccCCC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISRQLP 275 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~~lp 275 (372)
.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.+++.++++.. ++.+...|+..++
T Consensus 4 ~i~~~~~~~~~--------~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~ 72 (169)
T smart00650 4 KIVRAANLRPG--------DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHhcCCCCc--------CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC
Confidence 45555554444 689999999999999999873 468999999999999887632 4667777888888
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeC
Q 017377 276 YPSLSFDMVHCAQCGIIWDKKEGIFLIEADR--LLKPGGYFVLTSP 319 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~~~~~~~L~el~r--vLkPGG~lvis~p 319 (372)
+++..||.|+++-- ++... ..+..+.. .+.++|.+++..-
T Consensus 73 ~~~~~~d~vi~n~P-y~~~~---~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 73 LPKLQPYKVVGNLP-YNIST---PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ccccCCCEEEECCC-cccHH---HHHHHHHhcCCCcceEEEEEEHH
Confidence 88778999998743 44321 23333332 2458888888654
No 117
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.89 E-value=3e-08 Score=94.97 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=73.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG- 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~- 290 (372)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 5899999999999999998743 35799999999999988875 443 5555555433 4455589999996110
Q ss_pred -----------ccccc------------cHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 -----------IIWDK------------KEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 -----------~~~~~------------~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.++.+ ....++.++.++|+|||++++....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 11101 2335788899999999999987653
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.88 E-value=5.9e-09 Score=101.67 Aligned_cols=103 Identities=31% Similarity=0.330 Sum_probs=70.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------------CCeEEEEeeccC------CC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------------LPAMIGNFISRQ------LP 275 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------------l~~~~~~~d~~~------lp 275 (372)
..+|||+|||-|.-.......+ ...++|+|++...|+.|++|- ..+.+...|... ++
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 3799999999888666666654 356899999999999998873 123344444322 22
Q ss_pred CCCCCccEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWDKKE---GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~~~~---~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.....||+|-|-+++|+..+.. ..+|..+...|+|||+|+.+.|..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 2235999999999876665443 358999999999999999988753
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.87 E-value=1.4e-07 Score=83.81 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ 273 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~ 273 (372)
.....+...++ ..++|||||+|+.+..++..+ ....++++|-++.+++..+++ +++ +.+...++..
T Consensus 25 l~ls~L~~~~g--------~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 25 LTLSKLRPRPG--------DRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHhhCCCCC--------CEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 44556666666 799999999999999999444 457899999999999776654 544 3444444332
Q ss_pred -CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 274 -LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 274 -lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++-. .+||.|+...+ .+...+|..+...|||||.+++....
T Consensus 96 ~L~~~-~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 96 ALPDL-PSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hhcCC-CCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 2211 27999999866 34456899999999999999998763
No 120
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=1.6e-08 Score=95.87 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=76.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEec----c
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCA----Q 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~----~ 288 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++. +.+...|...++...+.||.|++. .
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 7899999999999999887632334699999999999877654 543 455556666665555679999963 1
Q ss_pred c-cc--------cccc--------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 C-GI--------IWDK--------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~-~~--------~~~~--------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. .. .+.+ ....+|.++.++|||||+++.++.....
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 11 1111 1235899999999999999999876544
No 121
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=4.5e-08 Score=93.75 Aligned_cols=102 Identities=18% Similarity=0.089 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----------CCeEEEEeeccC-CCCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----------LPAMIGNFISRQ-LPYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----------l~~~~~~~d~~~-lp~~~~sFDlV 284 (372)
.+++|||||||.|.++..++++. ....|+++|+++.+++.|++.- ..+.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35799999999999999998762 3357899999999999998741 123444444433 23346789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .++... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98632 233222 24578999999999999998644
No 122
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.86 E-value=2.9e-08 Score=89.68 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=93.9
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHH----HHHHcCCCeE--EEEeeccCC--CC------CCCCccEE
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQ----LALERGLPAM--IGNFISRQL--PY------PSLSFDMV 284 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~----~A~~rgl~~~--~~~~d~~~l--p~------~~~sFDlV 284 (372)
+|||||||||..+.+++.+-+ .....+.|.++.... .+.+.+++.. ...+|...- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999998743 366788888887753 2333344321 112233333 33 35699999
Q ss_pred Eecccccccc-ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcc---------------hhhHHHHHHHHHHHhcCe
Q 017377 285 HCAQCGIIWD-KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSR---------------KNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 285 ~~~~~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~---------------e~~~~w~~i~~l~~~lcw 348 (372)
+|.++++.+. .....++..+.++|+|||.|++.+|.... ..++.. .-....+.+..++...+.
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9998865554 33346899999999999999999986554 111111 112234567888888888
Q ss_pred eEEeee-----cceEEEEe
Q 017377 349 SLIAQQ-----DETFIWQK 362 (372)
Q Consensus 349 ~~~~~~-----~~~~iw~K 362 (372)
++.... +...||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 876542 45677776
No 123
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=2.2e-08 Score=96.89 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+++--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 579999999999999998874 236799999999999988765 442 5555555432 33456899999972100
Q ss_pred ------------cccc------------cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 ------------IWDK------------KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ------------~~~~------------~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++.+ ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1100 113578899999999999998754
No 124
>PRK04457 spermidine synthase; Provisional
Probab=98.85 E-value=6.3e-08 Score=91.71 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-C-----CCeEEEE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-G-----LPAMIGN 268 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-g-----l~~~~~~ 268 (372)
.|.+.+...+...+ .+++|||||||.|.++..++... ....++++|+++.+++.|++. + ..+.+..
T Consensus 52 ~y~~~m~~~l~~~~-------~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~ 123 (262)
T PRK04457 52 AYTRAMMGFLLFNP-------RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIE 123 (262)
T ss_pred HHHHHHHHHHhcCC-------CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45555554443222 34789999999999999998774 346799999999999999876 2 1244555
Q ss_pred eeccC-CCCCCCCccEEEecccc-ccccc--cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 FISRQ-LPYPSLSFDMVHCAQCG-IIWDK--KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~d~~~-lp~~~~sFDlV~~~~~~-~~~~~--~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.|... ++-..++||+|++...- ..... ....++.++.++|+|||.+++...
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 55432 22224689999986210 11111 124699999999999999999754
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=3.6e-08 Score=99.77 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=78.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEEec----
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCA---- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~~~---- 287 (372)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 7899999999999999988632346799999999999887755 554 456666766665 456789999963
Q ss_pred -cccccccc----------------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 -QCGIIWDK----------------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 -~~~~~~~~----------------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.....-.+ ....+|.++.++|||||++++++.....
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 11111011 1235789999999999999999987654
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.84 E-value=2.1e-08 Score=93.22 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
...++||||+|.|..+..|+..- ..|++.|.|..|...-+++|..+.- ..+..-.+..||+|.|.+++-. .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~----~~~w~~~~~~fDvIscLNvLDR-c~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLD----IDDWQQTDFKFDVISCLNVLDR-CD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEe----hhhhhccCCceEEEeehhhhhc-cC
Confidence 34689999999999999998752 3478889999999999999986542 2223323568999999877544 48
Q ss_pred cHHHHHHHHHhcccCCeEEEEEe
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+|..+|++|++.|+|+|.++++.
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEE
Confidence 88889999999999999999865
No 127
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.83 E-value=3e-08 Score=92.44 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
+.++|+|||+|.|.++..++++.+. ..++..|. +..++.+++ .-.+.+...|.. -++|. +|+|+..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 3478999999999999999988654 56788998 778888887 445777777776 67776 999999999999975
Q ss_pred cH-HHHHHHHHhcccCC--eEEEEEeCCCCC
Q 017377 296 KE-GIFLIEADRLLKPG--GYFVLTSPESKP 323 (372)
Q Consensus 296 ~~-~~~L~el~rvLkPG--G~lvis~p~~~~ 323 (372)
+. ..+|+++++.|+|| |.++|.+...+.
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 44 47899999999999 999999876554
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.82 E-value=1e-07 Score=93.37 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------------CCCeEEEEeeccC-CCCCCCCcc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------------GLPAMIGNFISRQ-LPYPSLSFD 282 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------------gl~~~~~~~d~~~-lp~~~~sFD 282 (372)
.+++||+||||+|..+..+++.. ....|+.+|+++.+++.|++. ...+.+...|+.. ++-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45799999999999988888763 346799999999999999962 1234444444443 333457899
Q ss_pred EEEecccccccc-----ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 283 MVHCAQCGIIWD-----KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 283 lV~~~~~~~~~~-----~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+|++... .... -....++..+.+.|+|||.+++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998732 1111 1113588999999999999988744
No 129
>PHA03411 putative methyltransferase; Provisional
Probab=98.81 E-value=2.9e-08 Score=93.65 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=74.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++...+.+...|+..+. .+++||+|+++-.+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 5899999999999988877632 25799999999999999887545666666766654 34689999998665553211
Q ss_pred ------------------HHHHHHHHHhcccCCeEEEEE
Q 017377 297 ------------------EGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 297 ------------------~~~~L~el~rvLkPGG~lvis 317 (372)
...++.....+|+|+|.+.+.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 134667788899999977765
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=4.1e-08 Score=99.83 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=80.7
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeecc
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISR 272 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~ 272 (372)
..+...+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ |+. +.+...|..
T Consensus 240 ~lv~~~l~~~~g--------~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 311 (444)
T PRK14902 240 MLVAPALDPKGG--------DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR 311 (444)
T ss_pred HHHHHHhCCCCC--------CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 344555554444 7899999999999999988632335799999999999887764 543 455556665
Q ss_pred CCC--CCCCCccEEEeccc------ccc-----ccc---c-------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 273 QLP--YPSLSFDMVHCAQC------GII-----WDK---K-------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 273 ~lp--~~~~sFDlV~~~~~------~~~-----~~~---~-------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++ ++ ++||+|++.-- +.+ |.. + ...+|.++.++|||||.+++++.....
T Consensus 312 ~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 312 KVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred cccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 543 33 78999997421 000 100 0 134799999999999999998765433
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.79 E-value=1.4e-07 Score=88.83 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=68.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeeccC-CCC-CCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFISRQ-LPY-PSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~~~-lp~-~~~sFDlV~~~~~~~~~ 293 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++- ....+...|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999998763 2356899999999999888651 112344444432 221 13579999997321110
Q ss_pred ------c---------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 ------D---------------KK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ------~---------------~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
. .+ ...++..+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999999865
No 132
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=92.59 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=86.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+++|||||.|.....|...++ ..++-+|.|..|++.++.. ++.....+.|.+.++|.+++||+|+++.+ .||.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhhh
Confidence 5799999999999999999875 4577789999999988754 44455667788999999999999999965 8898
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+...-+.+++..|||+|.|+-+......
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 77777889999999999999977655443
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1e-07 Score=86.30 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
.....+.+.+...++ .+|||||||+|..++.|++.. ..|+.+|..+...+.|+++ |. ++.+.+.
T Consensus 59 ~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 59 HMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred HHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 355577778888777 899999999999999999874 2688899999999999875 55 3555555
Q ss_pred eccCCCCC-CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 270 ISRQLPYP-SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 270 d~~~lp~~-~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.. ..++ ...||.|+.+.+.-..+ ..+.+-|+|||.+++-.-
T Consensus 128 DG~-~G~~~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 128 DGS-KGWPEEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred Ccc-cCCCCCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 433 2333 37899999986644432 235678999999998765
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=7.2e-08 Score=89.10 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=69.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC--ceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD- 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~--~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~- 294 (372)
.+|||+|||+|.++..++.+.. ....|+++|+++.+++.|+++...+.+...|....++ +++||+|++|--.....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 6899999999999998887521 2357999999999999999876556666667665554 56899999983222110
Q ss_pred ----------ccHHHHHHHHHhcccCCeE
Q 017377 295 ----------KKEGIFLIEADRLLKPGGY 313 (372)
Q Consensus 295 ----------~~~~~~L~el~rvLkPGG~ 313 (372)
.-...++....++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1123477888887777775
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=1.3e-07 Score=97.58 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=69.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+...|... ++++++||+|+|+--.+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 589999999999999988763 235799999999999998876 432 3444444322 24456899999962111
Q ss_pred c-------------c--------ccc----HHHHHHHHHhcccCCeEEEEEe
Q 017377 292 I-------------W--------DKK----EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~-------------~--------~~~----~~~~L~el~rvLkPGG~lvis~ 318 (372)
. + ..+ ...++.++.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 0 011 1236778899999999999864
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.72 E-value=4.5e-07 Score=83.51 Aligned_cols=130 Identities=19% Similarity=0.104 Sum_probs=83.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCC----------------CeEEEEeeccCCCCCC-C
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGL----------------PAMIGNFISRQLPYPS-L 279 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl----------------~~~~~~~d~~~lp~~~-~ 279 (372)
.+||..|||.|.-...|+++| ..|+|+|+|+..++.+. ++++ .+.+.+.|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 689999999999999999987 56999999999999884 4433 1234555665554333 4
Q ss_pred CccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC-CCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 280 SFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP-RGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~-~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
+||+|+=..++..++++. ....+.+.++|+|||.+++.+..... ....|+... .-++++.+.. -.|++..-
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v--~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSV--TEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------HHHHHHHHT-TTEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCC--CHHHHHHHhc-CCcEEEEE
Confidence 799999776666665444 57899999999999994443332222 122333332 2244555544 45665543
No 137
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.72 E-value=7.4e-08 Score=87.57 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=87.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
+..++||.|+|-|..+..++-..+ -.|..+|..+..++.|++.-.. ..+.+...+++..+.++||+|++-.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 347899999999999998876644 4467789999999999964221 334445566665456799999999999
Q ss_pred cccccc-HHHHHHHHHhcccCCeEEEEEeCCCCCCCCC-Ccc--hhhHHHHHHHHHHHhcCeeEEeee
Q 017377 291 IIWDKK-EGIFLIEADRLLKPGGYFVLTSPESKPRGSS-SSR--KNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 291 ~~~~~~-~~~~L~el~rvLkPGG~lvis~p~~~~~~~~-~~~--e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.|.+++ .-.+|+.+...|+|||.+++-+......... ... .....-+.+..+.++.+.+++...
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 999744 3579999999999999999876544331100 000 011123456677788899988766
No 138
>PLN02366 spermidine synthase
Probab=98.69 E-value=3.3e-07 Score=88.67 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccCC--CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQL--PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~l--p~~~~sFDlV 284 (372)
.+++||+||||.|.++..++++ .....++.+|+++.+++.|++.- ..+.+...|+... ..++++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3589999999999999999877 34467889999999999998752 1244454454221 1235789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .++... ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98632 332221 23589999999999999987643
No 139
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.69 E-value=1e-07 Score=90.46 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-----------CCeEEEEeec------cCCCCCCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-----------LPAMIGNFIS------RQLPYPSL 279 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-----------l~~~~~~~d~------~~lp~~~~ 279 (372)
+..++|+|||.|.-....-+.++ ..++|+|+.+..|+.|++|- .++.+..+|. ..+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 36799999999987766666654 45789999999999998761 1345555543 23556666
Q ss_pred CccEEEeccccccccc---cHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 280 SFDMVHCAQCGIIWDK---KEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~---~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+||+|-|-+++|.--+ ..+.+|.++.+.|+|||+|+-+.|...
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 7999999988543222 234689999999999999999988643
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.7e-07 Score=83.90 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeecc
Q 017377 199 QIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISR 272 (372)
Q Consensus 199 ~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~ 272 (372)
.|...+.+.++ .+|||.|.|+|.++++|+..-.....++.+|+.+...+.|+++ ++. +.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 56667777777 8999999999999999996533446788999999999999987 332 445555665
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 273 QLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 273 ~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.-+++ .||+|+.- + ++|-.++..++.+|+|||.+++-.|..+.
T Consensus 157 ~~~~~~-~vDav~LD-----m-p~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 157 EGIDEE-DVDAVFLD-----L-PDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cccccc-ccCEEEEc-----C-CChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 555554 89999864 3 56667999999999999999999997644
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.67 E-value=9.1e-08 Score=88.47 Aligned_cols=101 Identities=26% Similarity=0.237 Sum_probs=80.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCC-CeEEEEeeccCCC---CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGL-PAMIGNFISRQLP---YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl-~~~~~~~d~~~lp---~~~~sFDlV~~~~~ 289 (372)
..+||||||.|.+...+|.+++. ..+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999999866 5799999998887554 45588 7888777765432 45669999999876
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKE--------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.|+... ..+++.+.++|+|||.+.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6665321 25899999999999999998653
No 142
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=2.1e-07 Score=96.34 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC------------CCeEEEEeeccC-CCCCCCCcc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG------------LPAMIGNFISRQ-LPYPSLSFD 282 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg------------l~~~~~~~d~~~-lp~~~~sFD 282 (372)
++++|||||||+|..+..++++. ...+++.+|+++.+++.|+++. ..+.+...|... +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 34789999999999999998763 3367999999999999999831 224445455443 222357899
Q ss_pred EEEecccccccccc-----HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 283 MVHCAQCGIIWDKK-----EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 283 lV~~~~~~~~~~~~-----~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+|++... .+..+. ...+++.+.+.|+|||.+++....
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999743 222221 135889999999999999997643
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.64 E-value=5e-07 Score=85.94 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
++++|||||||+|.++..+++.. ....++++|+++.+++.|++.- ..+.+...|... +....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34799999999999999888764 2356899999999999888741 112333333221 112257899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+... .+.... ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8643 222221 24688999999999999998744
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.63 E-value=1.6e-07 Score=85.14 Aligned_cols=100 Identities=29% Similarity=0.380 Sum_probs=72.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccC-CC--CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQ-LP--YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~-lp--~~~~sFDlV~~~~~ 289 (372)
..+||||||.|.+...++...+. ..+.|+|+....+..|.++ +++ +.+...|+.. ++ ++++++|.|+.++-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 37999999999999999998754 6799999999988765543 654 5566666655 22 56799999998854
Q ss_pred ccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKK--------EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p 319 (372)
-.|+.. ...+|..+.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 445321 13589999999999999999854
No 145
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.62 E-value=2.3e-07 Score=84.02 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCCcH----HHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc--------CC-----------------
Q 017377 216 GVQSVLDVGCGFGS----FGAHLVSL----KLMAVCVAVYEATGSQVQLALER--------GL----------------- 262 (372)
Q Consensus 216 ~~~~VLDIGCG~G~----~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r--------gl----------------- 262 (372)
.+-+|+.+||++|. ++..+.+. ......|.|.|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999994 44444441 22258899999999999999752 11
Q ss_pred --------CeEEEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 263 --------PAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 263 --------~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
.+.+...+..+.+.+.+.||+|+|.++++.+.++. ..++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 12344444444334567899999999999886443 4799999999999999999743
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.61 E-value=4.1e-07 Score=84.71 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCC-C-----CCCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQL-P-----YPSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~l-p-----~~~~sFDlV 284 (372)
+++|||||||+|..+..++..-.....++++|+++.+++.|+++ ++. +.+...++.+. + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 37899999999998888876533346799999999999988765 543 44444444331 1 124689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++... .+....++..+.++|+|||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 88632 13334688999999999999887543
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.61 E-value=5.1e-07 Score=91.82 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEe
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNF 269 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~ 269 (372)
...+.+.+.+...++ .+|||+|||+|.++..+++.. ..++++|+|+.+++.|+++ ++ ++.+...
T Consensus 284 ~l~~~vl~~l~~~~~--------~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~ 352 (443)
T PRK13168 284 KMVARALEWLDPQPG--------DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHA 352 (443)
T ss_pred HHHHHHHHHhcCCCC--------CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe
Confidence 445555555554443 689999999999999999874 4689999999999988864 44 3556655
Q ss_pred eccC----CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 270 ISRQ----LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 270 d~~~----lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+.. +++.+++||+|+++--... ....+..+.+ ++|++.++++..+
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeCh
Confidence 5532 3455678999998632111 1235555555 6999999998643
No 148
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=8.2e-07 Score=84.91 Aligned_cols=99 Identities=25% Similarity=0.253 Sum_probs=68.4
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+|||||||+|..+..++..... ..|+++|+|+.+++.|+++ ++ ..+......-+.--.++||+|+||--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 6999999999999999988643 6799999999999988865 53 2222222211221234899999982111100
Q ss_pred --------------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 --------------------KK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 --------------------~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+ ...++.++.+.|+|||.+++..-
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 01 12567889999999999998855
No 149
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=2.8e-07 Score=84.44 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-------eE----------EE-----------
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-------AM----------IG----------- 267 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-------~~----------~~----------- 267 (372)
.+..+|||||..|.++..+++.- ....+.|+|+++..|+.|++.--. +. ++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 34679999999999999999873 335689999999999999875110 00 00
Q ss_pred ----------------Eeecc-CCCCCCCCccEEEecc----ccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 268 ----------------NFISR-QLPYPSLSFDMVHCAQ----CGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 268 ----------------~~d~~-~lp~~~~sFDlV~~~~----~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
+++.. -+.+....||+|.|-. +-..|+++. ..++..+.++|.|||+|++.--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 00000 1123456899999952 222344433 4799999999999999998743
No 150
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.53 E-value=1.1e-06 Score=76.25 Aligned_cols=120 Identities=18% Similarity=0.063 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR 272 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~ 272 (372)
..-..+.|+..+....+ .-|||+|.|||.++..++++++...+++.++.|++.+....++-..+.+.++|+.
T Consensus 33 Ss~lA~~M~s~I~pesg--------lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~ 104 (194)
T COG3963 33 SSILARKMASVIDPESG--------LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAF 104 (194)
T ss_pred cHHHHHHHHhccCcccC--------CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchh
Confidence 34456666666665554 6899999999999999999999989999999999999888887666666666665
Q ss_pred CCC-----CCCCCccEEEeccccccccccHH-HHHHHHHhcccCCeEEEEEeCC
Q 017377 273 QLP-----YPSLSFDMVHCAQCGIIWDKKEG-IFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 273 ~lp-----~~~~sFDlV~~~~~~~~~~~~~~-~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+. +.+..||.|+|.--+..++.... ++|+++...|++||.++-....
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 554 67788999999865555543333 5889999999999999987665
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.51 E-value=1.3e-06 Score=77.66 Aligned_cols=131 Identities=19% Similarity=0.129 Sum_probs=70.1
Q ss_pred CcccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C
Q 017377 186 DGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G 261 (372)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g 261 (372)
+...+++..-..+.+.+...... ........+|||+|||+|..+..++... ....|+..|.++ .++..+.+ +
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~--~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEF--NPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp ------HHHHHHHHHHH---------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred cEEEechHHHHHHHHHHhccccc--chhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 34556666555555555321000 0111134799999999999999988872 335678889988 76655543 2
Q ss_pred ----CCeEEEEeeccC-C---CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 262 ----LPAMIGNFISRQ-L---PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 262 ----l~~~~~~~d~~~-l---p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..+.+..++=.+ . ....+.||+|+++.+++.- .....++.-+.++|+|+|.++++.+..
T Consensus 93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCcEEEecCcccccccccccCCEEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 112233222111 1 1234689999999987764 666678999999999999988887643
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.49 E-value=1.2e-06 Score=85.07 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=67.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCC-CCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPY-PSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~-~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..+++.+ ..++|+|+++.+++.|+++ +++ +.+...|+..+.. ..+.||+|+++--..
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 789999999999999999864 4689999999999988754 553 5666666655432 345799999873211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ...+.++..-++|++.++++..+.
T Consensus 252 G~----~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 252 GI----GKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred Cc----cHHHHHHHHHcCCCeEEEEECCcc
Confidence 11 112333344478888888776543
No 153
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.49 E-value=1.6e-06 Score=82.96 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CeEEEeCCCCcH----HHHHHHhcC---CceeEEEEeeCCHHHHHHHHHc--------CCC-------------------
Q 017377 218 QSVLDVGCGFGS----FGAHLVSLK---LMAVCVAVYEATGSQVQLALER--------GLP------------------- 263 (372)
Q Consensus 218 ~~VLDIGCG~G~----~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~r--------gl~------------------- 263 (372)
-+|+..||.+|. ++..+.+.. .....|+|+|+|+.+++.|++- +++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999994 344444431 1246799999999999988753 111
Q ss_pred ---------eEEEEeeccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 017377 264 ---------AMIGNFISRQLPYP-SLSFDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 264 ---------~~~~~~d~~~lp~~-~~sFDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~ 318 (372)
+.+...+....+++ .+.||+|+|.++++++.++ ...++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 12233333333443 5789999999998888543 4579999999999999988764
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.49 E-value=2.3e-06 Score=85.64 Aligned_cols=100 Identities=18% Similarity=0.115 Sum_probs=69.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCCC----CCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
.+|||+|||+|.++..++..+ ...++++|+|+.+++.|+++ ++. +.+...|+...- -..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 689999999999998776554 24789999999999988765 553 455555554321 13468999999
Q ss_pred cccccccc--------ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWD--------KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~--------~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.--.+.-. .....++....++|+|||.++..+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 73211111 1122345567899999999998764
No 155
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.47 E-value=7.6e-07 Score=84.77 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC--CCeEEEEeec
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG--LPAMIGNFIS 271 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg--l~~~~~~~d~ 271 (372)
....+.+.+.+....+ .+|||||||+|.++..+++++. .++++|+++.|++.++++. ..+.+...|.
T Consensus 28 ~~i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~ 96 (272)
T PRK00274 28 ENILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDA 96 (272)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChh
Confidence 3456677776665554 7899999999999999999853 6899999999999998753 3466777777
Q ss_pred cCCCCCCCCccEEEecc
Q 017377 272 RQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 272 ~~lp~~~~sFDlV~~~~ 288 (372)
..+++++-.+|.|+++-
T Consensus 97 ~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 97 LKVDLSELQPLKVVANL 113 (272)
T ss_pred hcCCHHHcCcceEEEeC
Confidence 77776643368888873
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.44 E-value=3.2e-06 Score=76.85 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcc-CCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEE
Q 017377 193 VKDYSRQIAEMIGL-GTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMI 266 (372)
Q Consensus 193 ~~~~~~~l~~~l~~-~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~ 266 (372)
.+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++. ..++++|.++.+++.++++ ++ ++.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~--------~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVD--------ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CHHHHHHHHHHHhhhcCC--------CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 34445555555532 222 6899999999999987666653 5799999999999887764 43 2455
Q ss_pred EEeeccC-CCCCCCCccEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeCC
Q 017377 267 GNFISRQ-LPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADR--LLKPGGYFVLTSPE 320 (372)
Q Consensus 267 ~~~d~~~-lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~r--vLkPGG~lvis~p~ 320 (372)
...|... ++...++||+|+++-- +.. .-...++..+.. +|+|+|.++++...
T Consensus 107 ~~~D~~~~l~~~~~~fDlV~~DPP-y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 107 VNTNALSFLAQPGTPHNVVFVDPP-FRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEchHHHHHhhcCCCceEEEECCC-CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 5555433 2223457999999843 111 112234454444 48999999998664
No 157
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.44 E-value=3e-06 Score=69.62 Aligned_cols=101 Identities=29% Similarity=0.312 Sum_probs=71.3
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC--C---eEEEEeeccC--CCCCC-CCccEEEeccccc
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL--P---AMIGNFISRQ--LPYPS-LSFDMVHCAQCGI 291 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl--~---~~~~~~d~~~--lp~~~-~sFDlV~~~~~~~ 291 (372)
++|+|||+|... .+.........++++|.++.++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333332221357779999999987555431 1 2344444444 77877 589999 665656
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6544 667999999999999999998876544
No 158
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.43 E-value=9.4e-07 Score=94.74 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=72.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC-CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL-PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l-p~~~~sFDlV~~~~~ 289 (372)
++|||+|||+|.++..++..+. ..|+++|+|+.+++.|+++ ++. +.+...|..+. .-..++||+|++.--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 6899999999999999998753 3589999999999988875 443 45555554331 111468999999621
Q ss_pred ccc----------ccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GII----------WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~----------~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+. ...+...++..+.++|+|||.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 111 0122345788889999999999887653
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.41 E-value=4.1e-06 Score=78.43 Aligned_cols=128 Identities=23% Similarity=0.230 Sum_probs=87.4
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeec
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFIS 271 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~ 271 (372)
..|...+.+.++ .+|||.|.|+|+++.+|+..-.....+..+|.++...+.|+++ |+. +.+...|.
T Consensus 30 ~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 30 SYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred HHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 356677788887 8999999999999999997522345688899999999998875 553 56666676
Q ss_pred cCCCCC---CCCccEEEeccccccccccHHHHHHHHHhcc-cCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 017377 272 RQLPYP---SLSFDMVHCAQCGIIWDKKEGIFLIEADRLL-KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (372)
Q Consensus 272 ~~lp~~---~~sFDlV~~~~~~~~~~~~~~~~L~el~rvL-kPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc 347 (372)
....|+ +..||.|+.- + ++|-.++..+.++| +|||.+++-.|.. .+.....+.+ +..+
T Consensus 102 ~~~g~~~~~~~~~DavfLD-----l-p~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----------eQv~~~~~~L-~~~g 163 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLD-----L-PDPWEAIPHAKRALKKPGGRICCFSPCI-----------EQVQKTVEAL-REHG 163 (247)
T ss_dssp GCG--STT-TTSEEEEEEE-----S-SSGGGGHHHHHHHE-EEEEEEEEEESSH-----------HHHHHHHHHH-HHTT
T ss_pred ecccccccccCcccEEEEe-----C-CCHHHHHHHHHHHHhcCCceEEEECCCH-----------HHHHHHHHHH-HHCC
Confidence 554443 3679999864 2 44445899999999 9999999999954 3334444455 4456
Q ss_pred eeEE
Q 017377 348 WSLI 351 (372)
Q Consensus 348 w~~~ 351 (372)
|..+
T Consensus 164 f~~i 167 (247)
T PF08704_consen 164 FTDI 167 (247)
T ss_dssp EEEE
T ss_pred Ceee
Confidence 6554
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.40 E-value=1.9e-06 Score=81.44 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++- -++.+...|
T Consensus 15 ~~~~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--------DPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHHhcCCCCc--------CeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 4566777777665554 789999999999999999884 36899999999999988762 235666777
Q ss_pred ccCCCCCCCCccEEEeccc
Q 017377 271 SRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 271 ~~~lp~~~~sFDlV~~~~~ 289 (372)
...++++ .||.|+++-.
T Consensus 84 ~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred cccCCch--hceEEEEcCC
Confidence 7777765 4899999844
No 161
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.38 E-value=6e-06 Score=76.53 Aligned_cols=122 Identities=19% Similarity=0.114 Sum_probs=74.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeE-EEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAM-IGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~-~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.|+..+++.+. ..++++|+++.|+.........+. +...+...+ +..-..||+++++..
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-- 152 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-- 152 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH--
Confidence 6899999999999999999853 568999999988876444433322 222222222 212236776666532
Q ss_pred cccccHHHHHHHHHhcccCCeEEEE-EeCCCCCC----CC-C---CcchhhHHHHHHHHHHHhcCeeEE
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVL-TSPESKPR----GS-S---SSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvi-s~p~~~~~----~~-~---~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
+ +|..+.+.|+| |.+++ .-|..... .. . ....+...-+.+..++...+|+..
T Consensus 153 -~------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 153 -S------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred -h------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 57889999999 66654 33433221 01 0 112233445555666677788765
No 162
>PRK04148 hypothetical protein; Provisional
Probab=98.37 E-value=3.2e-06 Score=71.59 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=64.0
Q ss_pred CeEEEeCCCCcH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|||||||+|. ++..|++.| ..|+++|+++..++.|++++..+...+.-..++.+ -+.+|+|.+.+. +.+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~-y~~a~liysirp----p~e 89 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI-YKNAKLIYSIRP----PRD 89 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH-HhcCCEEEEeCC----CHH
Confidence 689999999996 888888776 46899999999999999998877776543222222 256999998754 233
Q ss_pred HHHHHHHHHhcccCCeEEEEEe
Q 017377 297 EGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~ 318 (372)
....+.++.+-+. .-++|..
T Consensus 90 l~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 90 LQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHcC--CCEEEEc
Confidence 3445555555443 4455543
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=7.1e-06 Score=76.66 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE--EE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM--IG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~--~~ 267 (372)
+.+.+.+.+.+..... .....+||+|||+|..+..++..-. ...++++|.|+.++..|.++ ++..+ +.
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4556666655543221 1224799999999999999887643 57799999999999888876 33322 22
Q ss_pred Eeec-----cCCCCCCCCccEEEecccccccc-------------------------ccHHHHHHHHHhcccCCeEEEEE
Q 017377 268 NFIS-----RQLPYPSLSFDMVHCAQCGIIWD-------------------------KKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 268 ~~d~-----~~lp~~~~sFDlV~~~~~~~~~~-------------------------~~~~~~L~el~rvLkPGG~lvis 317 (372)
+.++ ...+...+.+|+++||--.+.-. +....++.-..|.|+|||.+++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 2211 22345578999999982211100 01113455678999999999998
Q ss_pred eCCC
Q 017377 318 SPES 321 (372)
Q Consensus 318 ~p~~ 321 (372)
....
T Consensus 285 ~~~~ 288 (328)
T KOG2904|consen 285 LVER 288 (328)
T ss_pred eccc
Confidence 7744
No 164
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=98.35 E-value=2e-08 Score=81.48 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|++.+|+-|||+.|++...|..||||.|++.|+.++..|+.+..-|. +++++..
T Consensus 5 ~eva~~~gvs~~tlR~ye~~Gll~~~r~~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~ 65 (102)
T cd04789 5 SELAEKAGISRSTLLYYEKLGLITGTRNANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA 65 (102)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 447899999999999999999999889999999999999999999999988888 5666655
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=3.8e-06 Score=81.45 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGN 268 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~ 268 (372)
.++.+.+.+......+ ..|||==||||++..... ..+..+.|.|++..|++-|+.+ ++. ..+..
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEag---l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAG---LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhh---hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3566677776666666 789999999999876654 3456789999999999998876 333 32333
Q ss_pred e-eccCCCCCCCCccEEEecc--cc---cccc---ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 269 F-ISRQLPYPSLSFDMVHCAQ--CG---IIWD---KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 269 ~-d~~~lp~~~~sFDlV~~~~--~~---~~~~---~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. |+..+|+++++||.|++-- +. .... +-...+|..+.++|++||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 8999999999999999941 10 1111 1124689999999999999999988
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.33 E-value=6.6e-06 Score=77.43 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.+....+ .+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+...|
T Consensus 15 ~~i~~~i~~~~~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D 83 (253)
T TIGR00755 15 ESVIQKIVEAANVLEG--------DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGD 83 (253)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECc
Confidence 4456667776665544 7899999999999999998863 3899999999999888652 345667777
Q ss_pred ccCCCCCCCCcc---EEEecc
Q 017377 271 SRQLPYPSLSFD---MVHCAQ 288 (372)
Q Consensus 271 ~~~lp~~~~sFD---lV~~~~ 288 (372)
+..++++ +|| +|+++-
T Consensus 84 ~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 84 ALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred hhcCChh--HcCCcceEEEcC
Confidence 7777765 566 777763
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.28 E-value=3.9e-06 Score=76.59 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=73.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-----CCCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-----YPSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-----~~~~sFDlV 284 (372)
+++|||||+++|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 47899999999999999997644456799999999999988754 543 4555554432 11 124689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+.-.. ..+...++..+.++|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 98632 244456888899999999999987543
No 168
>PLN02672 methionine S-methyltransferase
Probab=98.28 E-value=6.6e-06 Score=90.80 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=69.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-----------------CeEEEEeeccCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-----------------PAMIGNFISRQLPY 276 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-----------------~~~~~~~d~~~lp~ 276 (372)
.+|||+|||+|..+..+++.... ..++++|+|+.+++.|+++ ++ .+.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 58999999999999999987532 5799999999999988755 11 244555554332 2
Q ss_pred CC--CCccEEEeccccc--------------c-----------c----c----ccH----HHHHHHHHhcccCCeEEEEE
Q 017377 277 PS--LSFDMVHCAQCGI--------------I-----------W----D----KKE----GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 277 ~~--~sFDlV~~~~~~~--------------~-----------~----~----~~~----~~~L~el~rvLkPGG~lvis 317 (372)
.+ ..||+|++|--.+ + . . ++. ..++.+..++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999972111 0 0 0 111 35678888999999999987
Q ss_pred eC
Q 017377 318 SP 319 (372)
Q Consensus 318 ~p 319 (372)
.-
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 54
No 169
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=98.27 E-value=4.1e-08 Score=79.66 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|+|.+|+-|||+.|++...|..||||.|++.|+.++..|..+...|. +++++..
T Consensus 5 ~eva~~~gvs~~tLR~ye~~Gll~~~r~~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~ 65 (102)
T cd04775 5 GQMSRKFGVSRSTLLYYESIGLIPSARSEANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG 65 (102)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 457899999999999999999998888899999999999999999999988888 5666654
No 170
>PLN02476 O-methyltransferase
Probab=98.26 E-value=9.2e-06 Score=77.29 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C----CCCCccEE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y----PSLSFDMV 284 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~----~~~sFDlV 284 (372)
+++|||||+|+|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 47999999999999999987532345689999999999888764 553 4444444322 21 1 23689999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-.. ..+...++..+.++|+|||.+++...
T Consensus 199 FIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 199 FVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 97532 23345688899999999999888644
No 171
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.25 E-value=8.2e-06 Score=82.69 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=66.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccC----CCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQ----LPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~----lp~~~~sFDlV~~~~ 288 (372)
.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++ ++ ++.+...|... +++.+++||+|++.-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 689999999999999998763 3689999999999988864 44 35555555543 234456899999763
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..... ...++..+.+ ++|++.++++..
T Consensus 371 Pr~G~---~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKGC---AAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCCCC---CHHHHHHHHh-cCCCEEEEEcCC
Confidence 21111 1235665554 889998888743
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.23 E-value=9e-06 Score=80.95 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp-~~~~sFDlV~~~~~~~ 291 (372)
.+|||+|||+|.++..++..+ ..++++|+++.+++.|+++ ++ ++.+...|..... -..++||+|++.--.-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999764 4689999999999988765 44 3556666654322 1124699999873211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 123455554 4799999998864
No 173
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-05 Score=75.88 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCeEEEeCCCCc----HHHHHHHhcCC----ceeEEEEeeCCHHHHHHHHHc---------CCC----------------
Q 017377 217 VQSVLDVGCGFG----SFGAHLVSLKL----MAVCVAVYEATGSQVQLALER---------GLP---------------- 263 (372)
Q Consensus 217 ~~~VLDIGCG~G----~~~~~L~~~~~----~~~~v~gvD~s~~~v~~A~~r---------gl~---------------- 263 (372)
+-+|.-+||++| +.+..|.+... ....|+|.|++...++.|+.- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 468999999999 45555555543 258899999999999988642 221
Q ss_pred ---------eEEEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 017377 264 ---------AMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 264 ---------~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+...+....++..+.||+|+|-++++.+.... ..++..++..|+|||+|++-..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 1111222222232457799999999988886443 4799999999999999999643
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=73.89 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE--EEE-eeccC-CC-CCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM--IGN-FISRQ-LP-YPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~--~~~-~d~~~-lp-~~~~sFDlV~~ 286 (372)
++++|||||.+.|..+..|+..-.....++.+|.++++.+.|+++ |+... ... +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 347899999999999999998744346799999999999999876 55432 222 22211 11 45689999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-. ...+...++..+.++|+|||.+++....
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 52 2333446999999999999999986543
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=4.2e-05 Score=74.34 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC--e
Q 017377 192 GVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP--A 264 (372)
Q Consensus 192 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~--~ 264 (372)
+...|+..+.+.+..............+|||||||+|.....|+.+.. ...++|+|+++.+++.|+++ ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 345788888777754221111122346899999999988777776532 46799999999999988864 232 2
Q ss_pred EEE-EeeccCC----CCCCCCccEEEeccc
Q 017377 265 MIG-NFISRQL----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 265 ~~~-~~d~~~l----p~~~~sFDlV~~~~~ 289 (372)
.+. ..+...+ ..+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 221 1111111 124678999999954
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.6e-06 Score=73.69 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=67.6
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc---CC------------CeEEEEeeccCCCCCCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER---GL------------PAMIGNFISRQLPYPSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r---gl------------~~~~~~~d~~~lp~~~~sF 281 (372)
.+.||+|.|+|.++..++.. +......+|+|..++.|+.++++ .+ ...+...|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999998887743 33334448999999999988765 11 1234455555555567889
Q ss_pred cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 282 DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.|||.... ....+++...|+|||.+++-..
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEeec
Confidence 999997331 1245677788999999988654
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.20 E-value=6e-06 Score=79.78 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHcCCCeE--EEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALERGLPAM--IGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~rgl~~~--~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.++|||||||+|.++...++.|. ..+.++|.|.-+. +.++.+++... +.....+++.+|-+..|+|++...-+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 37899999999999999998873 5688899876551 33444565532 33334444455578899999964322
Q ss_pred cc--cccHHHHHHHHHhcccCCeEEE
Q 017377 292 IW--DKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 292 ~~--~~~~~~~L~el~rvLkPGG~lv 315 (372)
.. ..-...+|-.=++-|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22 1222346666788999999987
No 178
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.20 E-value=4.9e-06 Score=85.94 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCC-eEEEEeeccCC--CCCCCCccEEEec
Q 017377 215 AGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLP-AMIGNFISRQL--PYPSLSFDMVHCA 287 (372)
Q Consensus 215 ~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~-~~~~~~d~~~l--p~~~~sFDlV~~~ 287 (372)
.+...+||||||.|.|...++..++. ..+.|+|++...+..+.. .++. +.+...++..+ -++++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34578999999999999999998755 668999999987765543 3554 33433343222 2788999999998
Q ss_pred cccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 017377 288 QCGIIWDKKE--------GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 288 ~~~~~~~~~~--------~~~L~el~rvLkPGG~lvis~p 319 (372)
+. -.|+... ..+|..+.++|+|||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 65 5664221 2589999999999999999854
No 179
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=98.18 E-value=3e-07 Score=81.61 Aligned_cols=62 Identities=18% Similarity=0.033 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
+.=||.++|+|.+|+.|||+.|++.. .|..||||.|+++|+.+|..|..+...|. +++++..
T Consensus 4 I~evA~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~ 66 (172)
T cd04790 4 ISQLARQFGLSRSTLLYYERIGLLSPSARSESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS 66 (172)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34588999999999999999999985 67899999999999999999999999998 6777776
No 180
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.5e-05 Score=70.81 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=52.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC----CCeEEEEeeccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG----LPAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg----l~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
++|+|+|||||.++...+-.|. ..|+++|+++.+++.++++- -.+.+...|..+. ...||.|++|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 7899999999999988877764 56899999999999988762 2566776666655 4668999987
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.14 E-value=1.2e-05 Score=71.74 Aligned_cols=100 Identities=26% Similarity=0.251 Sum_probs=65.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCce--------eEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMA--------VCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~--------~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDl 283 (372)
..|||--||+|++....+..+... ..+.|.|+++.+++.|+++ ++. +.+...|+..+++.++++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 689999999999986665442222 2478999999999988876 443 56777788999988899999
Q ss_pred EEeccccc-ccc--ccH----HHHHHHHHhcccCCeEEEEE
Q 017377 284 VHCAQCGI-IWD--KKE----GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 284 V~~~~~~~-~~~--~~~----~~~L~el~rvLkPGG~lvis 317 (372)
|+++--.- -.. .+. ..++.++.++|++...++++
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99972100 001 111 25689999999994444444
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.14 E-value=1.3e-05 Score=77.21 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--CCeEEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G--LPAMIG 267 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g--l~~~~~ 267 (372)
....+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + -++.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4566677777666555 789999999999999999874 3589999999999988764 2 235566
Q ss_pred EeeccCCCCCCCCccEEEecc
Q 017377 268 NFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~ 288 (372)
..|+...++ ..||+|+++-
T Consensus 91 ~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred ECCHhhhcc--cccCEEEecC
Confidence 666655554 4689999873
No 183
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=98.13 E-value=4.7e-07 Score=74.66 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.+.|+|..|+=|||+.|++...|..||||.|++.++.++..|..|...|. ++++..
T Consensus 4 ~eva~~~gvs~~tlR~Ye~~GLl~p~r~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sl~eI~ 63 (112)
T cd01282 4 GELAARTGVSVRSLRYYEEQGLLVPERSANGYRDYDEAAVDRVRQIRRLLAAGL---TLEEIR 63 (112)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347889999999999999999999899999999999999999999999998877 454444
No 184
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=98.10 E-value=5.7e-07 Score=76.45 Aligned_cols=61 Identities=11% Similarity=-0.086 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.++|+|..|+-|||+.|++...|-. ||||.|++.++.++..|+.+...|. ++++...
T Consensus 4 gE~A~~~gvs~~TLRyYE~~GLl~p~r~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 4 KELANAAGVTPDTVRFYTRIGLLRPTRDPVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34788999999999999999999887776 9999999999999999999999888 5666443
No 185
>PLN02823 spermine synthase
Probab=98.06 E-value=4.2e-05 Score=74.93 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---------CCeEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---------LPAMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---------l~~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||.||+|.|..+..+++.. ....++.+|+++.+++.|++.. ..+.+...|... +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45789999999999999888763 2356899999999999998752 123333333322 233457899999
Q ss_pred ecccccccc---c---cHHHHHH-HHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWD---K---KEGIFLI-EADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~---~---~~~~~L~-el~rvLkPGG~lvis~p 319 (372)
+-. .-.+. . ....+++ .+.+.|+|||.+++...
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 862 12211 0 1234777 89999999999987643
No 186
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=98.03 E-value=9.4e-07 Score=75.71 Aligned_cols=55 Identities=9% Similarity=-0.131 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
.=||.++|++..|+=|||+.|++...|..||||+|+++|+.++..|..++..|..
T Consensus 5 ~EvA~~~Gvs~~tLRyYE~~GLl~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~s 59 (139)
T cd01110 5 GEVAKRSGVAVSALHFYEQKGLIASWRNAGNQRRYPRDVLRRIAFIKVAQRLGLS 59 (139)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeEECHHHHHHHHHHHHHHHcCCC
Confidence 4478999999999999999999998999999999999999999999999988883
No 187
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.03 E-value=2.1e-05 Score=79.98 Aligned_cols=97 Identities=26% Similarity=0.286 Sum_probs=65.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHH----HHcCC--CeEEEEeeccCCCCCCCCccEEEec
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLA----LERGL--PAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A----~~rgl--~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
...|||||||+|.+....++.+ .....|.+++-++.++... +.++. .+.+...+++++..|. .+|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 3679999999999987666543 1346799999998776443 33444 4778888888887764 89999996
Q ss_pred ccccccc--ccHHHHHHHHHhcccCCeEEE
Q 017377 288 QCGIIWD--KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 288 ~~~~~~~--~~~~~~L~el~rvLkPGG~lv 315 (372)
-.- .+. +-....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 321 222 222357888999999999887
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.03 E-value=0.00013 Score=69.18 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=90.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHcC--C-Ce----------------------E---
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALERG--L-PA----------------------M--- 265 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~rg--l-~~----------------------~--- 265 (372)
..+||=-|||.|.++-.++.+|+ .+.|.|.|--|+ ++..... . .. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 46899999999999999999864 578999999886 2332210 0 00 0
Q ss_pred --------------EEEeeccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCC-
Q 017377 266 --------------IGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSS- 327 (372)
Q Consensus 266 --------------~~~~d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~- 327 (372)
...+|...+..++ ++||.|++.+ ++.-..+.-..|..|.++|||||+++=.+|.-.+-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0001111111123 6999999874 35544666789999999999999888777765542221
Q ss_pred --CcchhhHHHHHHHHHHHhcCeeEEeeec
Q 017377 328 --SSRKNKSLLKVMEEFTEKICWSLIAQQD 355 (372)
Q Consensus 328 --~~~e~~~~w~~i~~l~~~lcw~~~~~~~ 355 (372)
.....+-.|+++..+++.++|+.+.++.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0011344589999999999999987663
No 189
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=98.02 E-value=1.1e-06 Score=70.49 Aligned_cols=60 Identities=13% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccccccceeccCCCCc-cccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPD-IYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.++|++..|+-|||+.|++...+ -.||||.|++.|+.++..|+.+..-|. ++++-.
T Consensus 4 ~eva~~~gvs~~tLRyye~~Gll~p~~~~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~~I~ 64 (96)
T cd04768 4 GEFAKLAGVSIRTLRHYDDIGLFKPAKIAENGYRYYSYAQLYQLQFILFLRELGF---SLAEIK 64 (96)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347899999999999999999998754 589999999999999999999998888 454444
No 190
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=3.8e-06 Score=78.97 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=77.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK- 296 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~- 296 (372)
..++|+|||.|-.+.. + ....+.|.|.+...+..++..+.. .....|+..+|+.+.+||.+++..+++|+...
T Consensus 47 sv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 5799999999965321 2 224578999999999888877764 33445788999999999999999888887533
Q ss_pred -HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 297 -EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 297 -~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...+++|+.|+|||||...+.......
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 346999999999999998877665544
No 191
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=97.99 E-value=1.2e-06 Score=75.34 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=||.++|++..|+=|||+.|++...|-.||||+|+++|+.++..|..+..-|.
T Consensus 5 gevA~~~Gvs~~tLRyYE~~GLl~~~r~~~g~R~Y~~~di~~l~~I~~lr~~G~ 58 (142)
T TIGR01950 5 GELAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRRVAVIKAAQRVGI 58 (142)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 447899999999999999999999889999999999999999999999988887
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.99 E-value=7.5e-05 Score=76.31 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=74.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEE----ec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVH----CA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~----~~ 287 (372)
.+|||++||.|.=+..+++.-.....+++.|+++.-++..+++ |+. +.+.+.|...++ ...+.||.|+ |+
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 7899999999999999988632335689999999888766544 665 345555555442 3346799999 55
Q ss_pred cc---------ccccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QC---------GIIWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~---------~~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.. ...|..+ ...+|....++|||||+++.++.....
T Consensus 195 G~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 195 GEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 22 1112111 135788999999999999999987655
No 193
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=2.8e-05 Score=72.97 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C-----CCCCccE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y-----PSLSFDM 283 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~-----~~~sFDl 283 (372)
+++|||||+++|..+..++..-.....++.+|.++...+.|++. |+. +.+...++.+ ++ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 47899999999999999987533456799999999999888754 543 3444443322 12 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|+.-.- ......++..+.++|+|||.+++..
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 997632 2333457888889999999988753
No 194
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.98 E-value=1.4e-06 Score=73.36 Aligned_cols=60 Identities=15% Similarity=-0.017 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|-++|+|..|+=|||+.|++. ..|..||||.|+++|+.++..|..+..-|. ++++..
T Consensus 4 gevA~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (127)
T cd04784 4 GELAKKTGCSVETIRYYEKEGLLPAPARSANNYRLYDEEHLERLLFIRRCRSLDM---SLDEIR 64 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347889999999999999999997 567889999999999999999998888788 455444
No 195
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=97.96 E-value=1.7e-06 Score=72.93 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+-|||+.|++. ..|..||||.|+++++.++..|..+..-|.
T Consensus 4 ~e~a~~~gvs~~tlRyYe~~GLl~~~~r~~~g~R~Y~~~~~~~l~~I~~lr~~G~ 58 (127)
T cd01108 4 GEAAKLTGLSAKMIRYYEEIGLIPPPSRSDNGYRVYNQRDIEELRFIRRARDLGF 58 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCC
Confidence 347889999999999999999997 678889999999999999999999988888
No 196
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.96 E-value=1.4e-05 Score=78.97 Aligned_cols=99 Identities=23% Similarity=0.220 Sum_probs=78.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..++|+|||.|....++... ....++|+|.++.++..+.+. ++. ..+...+....||++++||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 47899999999999888765 345678899999888666543 222 2234556778899999999999998877
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|. ++...++.|++|+++|||+++....
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHHH
Confidence 77 7777899999999999999997543
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.95 E-value=4.9e-05 Score=69.60 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC-------CeEE
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL-------PAMI 266 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl-------~~~~ 266 (372)
+.+.+.+++.-..+.. ...+|||...|-|.+++..+++|. ..|..++.++..++.|.-+.. .+.+
T Consensus 118 dP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 4555555554433331 237999999999999999999975 246667888888888875521 1233
Q ss_pred EEeeccCC--CCCCCCccEEEeccccccc--cccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHH
Q 017377 267 GNFISRQL--PYPSLSFDMVHCAQCGIIW--DKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEF 342 (372)
Q Consensus 267 ~~~d~~~l--p~~~~sFDlV~~~~~~~~~--~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l 342 (372)
..+|+.+. .|+|.+||+|+----.+.. .-.-..+.+|++|+|||||.++--+-++..+.+ . ......+..-
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr----G-~d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR----G-LDLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc----c-CChhHHHHHH
Confidence 33344332 4789999999753111111 112246889999999999999987765554222 1 1112233444
Q ss_pred HHhcCeeEEee
Q 017377 343 TEKICWSLIAQ 353 (372)
Q Consensus 343 ~~~lcw~~~~~ 353 (372)
..+.+|..+.+
T Consensus 265 Lr~vGF~~v~~ 275 (287)
T COG2521 265 LRRVGFEVVKK 275 (287)
T ss_pred HHhcCceeeee
Confidence 47778886544
No 198
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=97.95 E-value=1.8e-06 Score=72.78 Aligned_cols=54 Identities=13% Similarity=-0.040 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|+|..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|.
T Consensus 4 ~e~a~~~gvs~~tlRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (127)
T TIGR02044 4 GQVAKLTGLSSKMIRYYEEKGLIPPPLRSEGGYRTYTQQHLDELRLISRARQVGF 58 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 3478899999999999999999976 57889999999999999999999988887
No 199
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=5.4e-06 Score=71.68 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=89.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCC----eE-EEEe----eccCCCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLP----AM-IGNF----ISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~----~~-~~~~----d~~~lp~~~~sFDlV~~~ 287 (372)
+.|||+|.|.-.++..|........+|...|-++..++-.++- ..+ .. ...+ ...+......+||+|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 6899999997666666655555667788889999888655432 111 00 0000 111222345699999999
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee-cceEEEEec
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ-DETFIWQKT 363 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~-~~~~iw~K~ 363 (372)
.|++ +.+....+++.++++|+|.|..++..|-... ..+.+.++++..++...... -+..|||+.
T Consensus 111 DClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------SLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cchh-HHHHHHHHHHHHHHHhCcccceeEecCcccc-----------hHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9954 4455567889999999999999998884332 34455666677777777654 345677764
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.94 E-value=0.00013 Score=69.64 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEE----EEeeccCCCCCCCCccEEEecc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMI----GNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~----~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
.+++|||+|||+|...-.+.+.-.....++.+|.|+.|++.++.. ...... ...-....++. ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 457999999999986655554322446788999999999887653 111110 00101122332 339999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++....+.. ..+++.+...+.+ +|+|.+|+...
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 988886522 2466666666655 99999987654
No 201
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.93 E-value=6e-05 Score=73.02 Aligned_cols=102 Identities=20% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC-CCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG-LPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg-l~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+....+|+|.|.|..+..++..- . .+.+++...+.+-.+...- ..+.....|+.+- .|.+ |+|++-.+++||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCC
Confidence 35789999999999999999853 2 2677888888876555443 3333333333333 3433 6999999999997
Q ss_pred ccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 295 KKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 295 ~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++. ..+|++++..|+|||.+++.+...+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 443 57999999999999999999875443
No 202
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.93 E-value=0.0001 Score=67.18 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=82.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC---CCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY---PSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~---~~~sFDlV~~~~~~~~~~ 294 (372)
-++|||||=+...... .. ....|+.||+++. ...+...+ ....|. +++.||+|.|+.++-.+
T Consensus 53 lrlLEVGals~~N~~s--~~--~~fdvt~IDLns~--------~~~I~qqD--Fm~rplp~~~~e~FdvIs~SLVLNfV- 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TS--GWFDVTRIDLNSQ--------HPGILQQD--FMERPLPKNESEKFDVISLSLVLNFV- 117 (219)
T ss_pred ceEEeecccCCCCccc--cc--CceeeEEeecCCC--------CCCceeec--cccCCCCCCcccceeEEEEEEEEeeC-
Confidence 5899999975543222 12 2356899999752 22333443 334444 46799999999775555
Q ss_pred ccH---HHHHHHHHhcccCCeE-----EEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecc----eEEEEe
Q 017377 295 KKE---GIFLIEADRLLKPGGY-----FVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDE----TFIWQK 362 (372)
Q Consensus 295 ~~~---~~~L~el~rvLkPGG~-----lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~----~~iw~K 362 (372)
+++ +.++..+.+.|+|+|. |+++.|.+-..+. ..-..+.+..+.+.+++..+..+.. -..|+|
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-----Ry~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-----RYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-----cccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 433 4799999999999999 9999886543211 1111234566778899998876533 246777
Q ss_pred cCC
Q 017377 363 TVD 365 (372)
Q Consensus 363 ~~~ 365 (372)
...
T Consensus 193 ~~~ 195 (219)
T PF11968_consen 193 SGK 195 (219)
T ss_pred cCC
Confidence 544
No 203
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=97.92 E-value=2e-06 Score=70.34 Aligned_cols=54 Identities=13% Similarity=-0.055 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|++..|+=|||+.|++.. .|..||||.|++.|+.++..|..+...|.
T Consensus 4 ge~A~~~gvs~~tlR~ye~~GLl~p~~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~ 58 (107)
T cd01111 4 SQLALDAGVSVHIVRDYLLRGLLHPVARTEGGYGLFDDCALQRLRFVRAAFEAGI 58 (107)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC
Confidence 3478899999999999999999976 68889999999999999999999887777
No 204
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.92 E-value=2e-06 Score=68.96 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=53.1
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||.++|++..|+=|||+.|++.. .|..||||.|++.|+.++..|..+..-|. ++++...
T Consensus 5 eva~~~gvs~~tlR~ye~~Gll~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~eI~~ 65 (96)
T cd04788 5 ELARRTGLSVRTLHHYDHIGLLSPSQRTEGGHRLYDRADIRRLHQIIALRRLGF---SLREIGR 65 (96)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478899999999999999999976 57789999999999999999999988888 5666554
No 205
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.90 E-value=2.5e-06 Score=68.50 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.++|++..|+=|||+.|++... |-.||||.|+++|+.++..|..+..-|. ++++...
T Consensus 4 ~eva~~~gvs~~tlR~ye~~Gll~p~~~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~ 65 (97)
T cd04782 4 GEFAKLCGISKQTLFHYDKIGLFKPEIVKENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD 65 (97)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 34789999999999999999999764 6679999999999999999999988888 4555443
No 206
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=97.90 E-value=2.3e-06 Score=71.38 Aligned_cols=56 Identities=13% Similarity=-0.140 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRP 83 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~ 83 (372)
.=+|.++|++..|+-|||+.|++...+-.||||.|+++++.++..|..+..-|...
T Consensus 4 gevA~~~gvs~~tlRyYe~~GLl~p~~~~~gyR~Y~~~~l~~l~~I~~lr~~G~~L 59 (120)
T cd04781 4 AEVARQSGLPASTLRYYEEKGLIASIGRRGLRRQYDPQVLDRLALIALGRAAGFSL 59 (120)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCCCH
Confidence 34789999999999999999999987667899999999999999999988877743
No 207
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=97.89 E-value=2.7e-06 Score=72.53 Aligned_cols=54 Identities=20% Similarity=0.025 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=||.++|++..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|.
T Consensus 4 ge~a~~~gvs~~tlRyYE~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (135)
T PRK10227 4 SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHCCC
Confidence 3478899999999999999999975 67889999999999999999999876666
No 208
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=97.89 E-value=2.7e-06 Score=70.97 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
+.-||.++|++..|+=|||+.|++...+.. ||||.|+++|++++..|..+..-|. +++++..
T Consensus 3 I~eva~~~gvs~~tLRyYE~~GLl~p~~~~~~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 3 IGEVAKLTGVSVRTLRFYERKGLLSPERRDEGGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCCCCCcccCCCCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 456899999999999999999999876555 8999999999999999999886566 6777765
No 209
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00026 Score=62.62 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCCCCCccEEEeccccc-
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGI- 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~- 291 (372)
+..+||||||+|..+..|++.........+.|+++.+.+. |+.++..+.....|... .+..++.|+++-+--..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence 4679999999999999999874344556789999998865 44455544333333211 12337788877762211
Q ss_pred -------------ccc--cc----HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 292 -------------IWD--KK----EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 292 -------------~~~--~~----~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.|. .+ .++++..+..+|.|.|.+++.....+.
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 121 11 235677888999999999998775443
No 210
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.87 E-value=3.2e-06 Score=70.76 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|.++|++..|+=|||+.|++. ..|-.||||.|+++++.++..|..+..-|. ++++..
T Consensus 4 ~eva~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~---sl~eI~ 64 (123)
T cd04770 4 GELAKAAGVSPDTIRYYERIGLLPPPQRSENGYRLYGEADLARLRFIRRAQALGF---SLAEIR 64 (123)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 347889999999999999999998 678889999999999999999999988888 455444
No 211
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.87 E-value=0.00012 Score=73.17 Aligned_cols=96 Identities=25% Similarity=0.236 Sum_probs=69.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.+|||++||+|.++..++.... ...|+++|+++.+++.++++ ++. ..+...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 5799999999999999987532 24689999999999988764 444 3345455543221146799999862
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+..++....+.+++||+++++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 1 2223477787788999999999944
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=0.00027 Score=66.97 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHH----HHHcCCC--eEEEEeeccCC---CCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQL----ALERGLP--AMIGNFISRQL---PYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~----A~~rgl~--~~~~~~d~~~l---p~~~~sFDlV~ 285 (372)
.+-+||||.||.|....-.+..... ..++.-.|.|+..|+. ++++|+. +.+.+.|+.+. .--+-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4568999999999987766665433 4578889999999865 4566776 35666665432 11234579999
Q ss_pred eccccccccccH--HHHHHHHHhcccCCeEEEEEeCCCCCCCCC---Ccchh---------hHHHHHHHHHHHhcCeeEE
Q 017377 286 CAQCGIIWDKKE--GIFLIEADRLLKPGGYFVLTSPESKPRGSS---SSRKN---------KSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 286 ~~~~~~~~~~~~--~~~L~el~rvLkPGG~lvis~p~~~~~~~~---~~~e~---------~~~w~~i~~l~~~lcw~~~ 351 (372)
.++...-+.++. ...|.-+.+.+.|||+++.+..+-.+.-.+ ..+.| +....+|..+.+..+++..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 997655554433 246888999999999999998654441100 00011 1224567777777777655
Q ss_pred ee
Q 017377 352 AQ 353 (372)
Q Consensus 352 ~~ 353 (372)
..
T Consensus 295 ~q 296 (311)
T PF12147_consen 295 DQ 296 (311)
T ss_pred hh
Confidence 43
No 213
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=97.84 E-value=3.2e-06 Score=73.58 Aligned_cols=57 Identities=11% Similarity=-0.131 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 25 CFLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.+.=+|-++|++..|+-|||+.|+|...|..||||+|++.++.+|..|..+..-|.
T Consensus 12 ~~IgevAk~~gvs~~TlRyYE~~GLi~~~r~~~g~R~Y~~~~i~~L~~I~~lr~lG~ 68 (154)
T PRK15002 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGI 68 (154)
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 456668999999999999999999999999999999999999999999999988888
No 214
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=97.84 E-value=3.9e-06 Score=70.78 Aligned_cols=55 Identities=9% Similarity=-0.082 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
.=||.++|+|..|+-|||+.|++.. .|-.||||.|++.++.++..|..+..-|..
T Consensus 4 ~e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~lG~s 59 (127)
T TIGR02047 4 GELAQKTGVSVETIRFYEKQGLLPPPARTDNNYRVYTVGHVERLAFIRNCRTLDMS 59 (127)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHcCCC
Confidence 3478899999999999999999974 678899999999999999999999888883
No 215
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=97.83 E-value=3.6e-06 Score=72.48 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 25 CFLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.+.=||.++|+|-.|+=|||+.|++.. .|-.||||.|++.++.++..|..+..-|. ++++..
T Consensus 8 ~~IgevAk~~Gvs~~TLRyYE~~GLl~p~~r~~~gyR~Y~~~~l~rl~~I~~lr~~G~---sL~eI~ 71 (144)
T PRK13752 8 LTIGVFAKAAGVNVETIRFYQRKGLLPEPDKPYGSIRRYGEADVTRVRFVKSAQRLGF---SLDEIA 71 (144)
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 4566789999999999999999999974 67789999999999999999999998888 555544
No 216
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.83 E-value=3.9e-06 Score=70.66 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTR 82 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~ 82 (372)
=+|.++|+|..|+=|||+.|++. ..|..||||.|++.++.++..|..+...|..
T Consensus 5 e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~s 59 (126)
T cd04783 5 ELAKAAGVNVETIRYYQRRGLLPEPPRPEGGYRRYPEETVTRLRFIKRAQELGFT 59 (126)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCCC
Confidence 47889999999999999999998 7888999999999999999999999888883
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=97.83 E-value=0.00049 Score=65.05 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---------CeEEEEeeccCCCCCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---------PAMIGNFISRQLPYPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---------~~~~~~~d~~~lp~~~~sFDlV~~ 286 (372)
.+++||=||.|.|..++.++++. ..++.+|+++..++.+++.-. .+.+... . ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h--hhccCCcCCEEEE
Confidence 56899999999999999999884 278999999999999987321 2222211 1 1112478999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-.. ....+.+.++|.|+|||.++...-.
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCC
Confidence 632 2234788999999999999997543
No 218
>cd04774 HTH_YfmP Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator. Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.82 E-value=3.6e-06 Score=67.46 Aligned_cols=53 Identities=17% Similarity=-0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~ 81 (372)
=+|..+|++.+|+-||++.|++...|..||||.|++.|+.++..|..|.. .|.
T Consensus 5 e~a~~~gvs~~tLR~ye~~Gll~p~r~~~g~R~Y~~~dv~~l~~I~~L~~~~G~ 58 (96)
T cd04774 5 EVAKRLGLTKRTLKYYEEIGLVSPERSEGRYRLYSEEDLKRLERILRLREVLGF 58 (96)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCEEECHHHHHHHHHHHHHHHHcCC
Confidence 47889999999999999999999889999999999999999999999988 666
No 219
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.82 E-value=0.00052 Score=61.86 Aligned_cols=99 Identities=15% Similarity=0.034 Sum_probs=64.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC-CC-C-CC-CCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ-LP-Y-PS-LSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~-lp-~-~~-~sFDlV~~~ 287 (372)
.+|||++||+|.++..++.++. ..++++|.++.+++.++++ ++. +.+...|... +. + .. ..||+|+..
T Consensus 51 ~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 6899999999999999999975 3589999999999877764 443 3455555422 11 1 12 247877764
Q ss_pred cccccccccHHHHHHHH--HhcccCCeEEEEEeCC
Q 017377 288 QCGIIWDKKEGIFLIEA--DRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el--~rvLkPGG~lvis~p~ 320 (372)
-- +.. .....++..+ ..+|++||.+++....
T Consensus 129 PP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PP-FFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 21 111 1222334333 4579999998887653
No 220
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.82 E-value=4.5e-06 Score=70.31 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=||.++|+|..|+=|||+.|++.. .|..||||.|+++++.++..|..+...|. ++++..
T Consensus 4 ~e~a~~~gvs~~tlR~Ye~~Gll~~~~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (126)
T cd04785 4 GELARRTGVNVETIRYYESIGLLPEPARTAGGYRLYGAAHVERLRFIRRARDLGF---SLEEIR 64 (126)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 4478999999999999999999975 57789999999999999999999988888 444443
No 221
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=97.82 E-value=3.8e-06 Score=70.04 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.+.=||...|++..|+=|||+.|++.. .|..||||.|++.++.+|..|..+...|. ++++..
T Consensus 5 tI~elA~~~gvs~~tlR~Ye~~GLL~p~~r~~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~ 67 (120)
T TIGR02054 5 TISRLAEDAGVSVHVVRDYLLRGLLHPVRRTTSGYGIFDDASLQRLRFVRAAFEAGI---GLGELA 67 (120)
T ss_pred cHHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 355689999999999999999999985 57889999999999999999999999888 455544
No 222
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.81 E-value=4.5e-06 Score=68.88 Aligned_cols=60 Identities=12% Similarity=-0.101 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcccccccceeccC-CCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSS-SKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
.=+|.+.|+|..|+-|||+.|++ ...|..||||.|+++++.++..|..+..-|. ++++-.
T Consensus 4 ~e~a~~~gvs~~tlr~ye~~gll~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (113)
T cd01109 4 KEVAEKTGLSADTLRYYEKEGLLPPVKRDENGIRDFTEEDLEWLEFIKCLRNTGM---SIKDIK 64 (113)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34788999999999999999999 4578889999999999999999999887777 455443
No 223
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=97.81 E-value=4.2e-06 Score=70.95 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||..+|++..|+-|||+.|++.. .|-.||||.|++.|+.++..|..+..-|. ++++...
T Consensus 5 e~a~~~gvs~~tLRyYE~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~Gf---sL~eI~~ 65 (131)
T cd04786 5 ELAKRSGMAASRIRFYEAEGLLSSVERSANGYRDYPPETVWVLEIISSAQQAGF---SLDEIRQ 65 (131)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478899999999999999999975 56789999999999999999999888877 5555443
No 224
>PRK13749 transcriptional regulator MerD; Provisional
Probab=97.78 E-value=4.4e-06 Score=69.69 Aligned_cols=63 Identities=14% Similarity=-0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.+.=||..+|+|-.|+=|||+.|++.. .|-.||||.|+++++.+|..|..+..-|. ++++...
T Consensus 5 tIgelA~~~gvS~~tiR~YE~~GLl~p~~r~~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 5 TVSRLALDAGVSVHIVRDYLLRGLLRPVACTTGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred cHHHHHHHHCCCHHHHHHHHHCCCCCCCCcCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 345688999999999999999999986 58889999999999999999998777777 5666654
No 225
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.78 E-value=5.3e-06 Score=69.05 Aligned_cols=54 Identities=9% Similarity=-0.215 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=||.++|+|..|+=|||+.|++...|.. |||.|++.++.++..|..+..-|.
T Consensus 3 Igeva~~~gvs~~tlRyYe~~GLl~p~r~~-gyR~Y~~~~l~~l~~I~~lr~~G~ 56 (118)
T cd04776 3 ISELAREFDVTPRTLRFYEDKGLLSPERRG-QTRVYSRRDRARLKLILRGKRLGF 56 (118)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcCCC-CccccCHHHHHHHHHHHHHHHCCC
Confidence 345889999999999999999999987865 999999999999999999988888
No 226
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.78 E-value=4.9e-06 Score=70.78 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.++|++..|+-||++.|++...|..+|||.|++.++.++..|..+..-|. ++++...
T Consensus 4 ~e~a~~~gvs~~TLR~Ye~~GLl~p~r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 64 (134)
T cd04779 4 GQLAHLAGVSKRTIDYYTNLGLLTPERSDSNYRYYDETALDRLQLIEHLKGQRL---SLAEIKD 64 (134)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCccCCCCCeeECHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 457899999999999999999999999999999999999999999999988888 5655543
No 227
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=97.77 E-value=5.4e-06 Score=70.29 Aligned_cols=55 Identities=11% Similarity=-0.065 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
+.=+|.+.|++..|+-|||+.|++.. .|-.||||.|++.|+.++..|..+..-|.
T Consensus 4 I~e~a~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 59 (131)
T TIGR02043 4 IGELAKLCGVTSDTLRFYEKNGLIKPAGRTDSGYRLYTDEDQKRLRFILKAKELGF 59 (131)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999986 57789999999999999999999888888
No 228
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.76 E-value=5.6e-06 Score=67.64 Aligned_cols=60 Identities=12% Similarity=-0.171 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=+|.+.|+|..|+=|||+.|++.. +-.||||+|++.++.++..|..+..-|. ++++-..
T Consensus 4 ge~a~~~gvs~~tlRyYe~~GLl~p-~~~~g~r~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 63 (107)
T cd04777 4 GKFAKKNNITIDTVRHYIDLGLLIP-EKKGGQYFFDEKCQDDLEFILELKGLGF---SLIEIQK 63 (107)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCcCC-ccCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3478999999999999999999976 4468999999999999999999988888 5555543
No 229
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=97.76 E-value=7.3e-06 Score=66.05 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLG 79 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g 79 (372)
=+|.++|+|..|+=|||+.|++.. .|..||||.|++.|+.++..|..|..|
T Consensus 5 e~A~~~gvs~~tlR~Ye~~Gll~~~~r~~~g~R~Y~~~~v~~l~~I~~l~~g 56 (99)
T cd04772 5 DLARAIGLSPQTVRNYESLGLIPPAERTANGYRIYTDKHIAALRAYRALLPG 56 (99)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCCeecCHHHHHHHHHHHHHhhC
Confidence 378899999999999999999985 688999999999999999999998744
No 230
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=97.74 E-value=6.2e-06 Score=70.77 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
+.=+|.++|++..|+=|||+.|++.. .|..||||.|++.++.++..|..+..-|. ++++-.
T Consensus 4 I~e~a~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 65 (140)
T PRK09514 4 IGELAKLAEVTPDTLRFYEKQGLMDPEVRTEGGYRLYTEQDLQRLRFIRRAKQLGF---TLEEIR 65 (140)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcccCCCCCeeeCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 34578999999999999999999986 57899999999999999999999988888 444444
No 231
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.73 E-value=1.5e-05 Score=71.69 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred eecCCCcccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 181 AFHSEDGLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 181 ~F~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.|-+ .++||--.+. ++.+.+.+... .|.+ .+.++||+|+|.|..+..++..- ..|.+.+.|..|....+.+
T Consensus 83 G~lg-rGsMFifSe~---QF~klL~i~~p-~w~~-~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLG-RGSMFIFSEE---QFRKLLVIGGP-AWGQ-EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccc-cCceEEecHH---HHHHHHhcCCC-ccCC-CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 4555 5567754444 44455544421 2332 44799999999999999887642 3367789999999999888
Q ss_pred CCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccC-CeEEEEEe
Q 017377 261 GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP-GGYFVLTS 318 (372)
Q Consensus 261 gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkP-GG~lvis~ 318 (372)
+.++.-.. +..-.+-.||+|.|-..+ .-..++..+|++++.+|+| .|..+++-
T Consensus 154 ~ynVl~~~----ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 154 NYNVLTEI----EWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CCceeeeh----hhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 87654321 111124469999997653 3347788899999999999 88888754
No 232
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=97.73 E-value=6.4e-06 Score=69.19 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=51.6
Q ss_pred HHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCG 90 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~ 90 (372)
=+|.++|++..|+=|||+.|++. ..|..||||.|++.++.++..|..+..-|. ++++-.
T Consensus 4 e~a~~~gvs~~tlR~Ye~~GLl~~~~r~~~g~R~Y~~~~l~~l~~I~~l~~~G~---sl~eI~ 63 (124)
T TIGR02051 4 ELAKAAGVNVETIRYYERKGLLPEPDRPEGGYRRYPEETVKRLRFIKRAQELGF---SLEEIG 63 (124)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCEeECHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 37889999999999999999997 568889999999999999999999988888 444444
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00029 Score=67.37 Aligned_cols=102 Identities=19% Similarity=0.068 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC---------eEEEEeeccC-CCCCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP---------AMIGNFISRQ-LPYPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~---------~~~~~~d~~~-lp~~~~sFDlV~ 285 (372)
.+++||-||-|.|.++..++++.. ...++.+|+++..++.|++.-.. +.+...|... +.-..++||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 457999999999999999999864 57789999999999999976221 1222222221 121234899999
Q ss_pred eccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 286 CAQCGIIWDK----KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 286 ~~~~~~~~~~----~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+-.. -...+ ....+++.+++.|+++|.++...-
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 8632 22111 124689999999999999999843
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.72 E-value=0.0002 Score=69.27 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhc------CCceeEEEEeeCCHHHHHHHHHc----CCC
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSL------KLMAVCVAVYEATGSQVQLALER----GLP 263 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~------~~~~~~v~gvD~s~~~v~~A~~r----gl~ 263 (372)
....+.+.+++....+ .+|+|-.||+|.|...+.+. ......+.|+|+++.++..|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~~~~--------~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKG--------DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT-TT--------EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcccc--------ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3456677777755444 68999999999998887762 12346799999999999887643 322
Q ss_pred e---EEEEeeccCCCCC--CCCccEEEecc--cccccc------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 264 A---MIGNFISRQLPYP--SLSFDMVHCAQ--CGIIWD------------------KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 264 ~---~~~~~d~~~lp~~--~~sFDlV~~~~--~~~~~~------------------~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. .+...|....+.. .+.||+|+++- ....|. .....++..+.+.|++||.+++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 2444443333322 47899999972 111010 011247788999999999999888
Q ss_pred CC
Q 017377 319 PE 320 (372)
Q Consensus 319 p~ 320 (372)
|.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 74
No 235
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.72 E-value=1.8e-06 Score=68.47 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
..-+|.++|++.+|+-||++.|++...|..+|||+|++.|+.++..|..|.. .|. +++....
T Consensus 4 i~e~A~~~gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i~~L~~d~g~---~l~~i~~ 66 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRIQRLTQELGV---NLAGVKR 66 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4568999999999999999999999889899999999999999999999987 666 5666665
No 236
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.72 E-value=7e-06 Score=68.10 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=50.5
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccc
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELD 87 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (372)
=+|.+.|+|..|+-|||+.|++...+..+|||.|++.|+.++..|..+..-|...++.+
T Consensus 5 e~a~~~gvs~~tLryYe~~GLi~p~~~~~~yR~Y~~~d~~~l~~I~~lr~~G~sl~eI~ 63 (116)
T cd04769 5 ELAQQTGVTIKAIRLYEEKGLLPSPKRSGNYRVYDAQHVECLRFIKEARQLGFTLAELK 63 (116)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCCCCCCceeeCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 36889999999999999999998765566999999999999999999988888544433
No 237
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.71 E-value=0.00019 Score=64.43 Aligned_cols=93 Identities=31% Similarity=0.372 Sum_probs=68.3
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCCC-eEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
+++|||+|.|.-|..|+-..+ ...++.+|....-+.+. .+.+++ +.+.+..++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 799999999998888876543 35688999998766543 344776 6666666666 556789999999744
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEe
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 344568888999999999988873
No 238
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.71 E-value=0.00015 Score=64.50 Aligned_cols=100 Identities=26% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC-----eE-EEEee-ccC-CCCCCCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP-----AM-IGNFI-SRQ-LPYPSLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~-----~~-~~~~d-~~~-lp~~~~sFDlV~~~ 287 (372)
+..+|||+||++|.|+..+++++.....+.|+|+.+..-- .+.. +. ..... ... ++-..+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----cceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 3479999999999999999998755688999999865100 1110 10 01000 011 11123689999996
Q ss_pred ccccccc----ccH-------HHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 QCGIIWD----KKE-------GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ~~~~~~~----~~~-------~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+ .... .+. ...+.-+...|+|||.+++-...
T Consensus 99 ~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 99 MA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 42 1111 111 12345556789999999988765
No 239
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=97.69 E-value=7.8e-06 Score=61.02 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=51.1
Q ss_pred HHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccC
Q 017377 29 IVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLC 89 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c 89 (372)
=+|.++|++.+|+-||++ .|++...|..+|||.|++.|+.++..|..|...|. +++++
T Consensus 5 e~A~~~gVs~~tlr~ye~~~gl~~~~r~~~g~R~yt~~di~~l~~i~~l~~~g~---~l~~i 63 (68)
T cd04763 5 EVALLTGIKPHVLRAWEREFGLLKPQRSDGGHRLFNDADIDRILEIKRWIDNGV---QVSKV 63 (68)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCCCcCCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHH
Confidence 478999999999999995 69998889999999999999999999999888777 55544
No 240
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=97.68 E-value=9.6e-06 Score=66.40 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCcc--ccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDI--YSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.=||.+.|++.+|+=|||+.|++...+. .||||.|++.++.++..|..+..-|. ++++...
T Consensus 4 ~eva~~~gis~~tlR~ye~~GLi~p~~~~~~ngyR~Y~~~~i~~l~~I~~lr~~G~---sl~~i~~ 66 (108)
T cd01107 4 GEFAKLSNLSIKALRYYDKIGLLKPAYVDPDTGYRYYSAEQLERLNRIKYLRDLGF---PLEEIKE 66 (108)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCcCCCCCCccccCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3478999999999999999999988663 48999999999999999999988777 4555443
No 241
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00033 Score=65.86 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcC---CCeEEEEee
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERG---LPAMIGNFI 270 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rg---l~~~~~~~d 270 (372)
....+.+.+.....++ .+|||||+|.|.+|..|++++. .++++++++.+++..+++. -+..+...|
T Consensus 16 ~~v~~kIv~~a~~~~~--------d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 16 KNVIDKIVEAANISPG--------DNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred HHHHHHHHHhcCCCCC--------CeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 4457777777766555 7899999999999999999853 4889999999999888773 345666778
Q ss_pred ccCCCCCCC-CccEEEec
Q 017377 271 SRQLPYPSL-SFDMVHCA 287 (372)
Q Consensus 271 ~~~lp~~~~-sFDlV~~~ 287 (372)
+-..++++. .++.|++|
T Consensus 85 aLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 85 ALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred hhcCcchhhcCCCEEEEc
Confidence 777777654 68999987
No 242
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.65 E-value=0.00036 Score=65.37 Aligned_cols=83 Identities=24% Similarity=0.199 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc--CCC--eEEEEe
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--GLP--AMIGNF 269 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--gl~--~~~~~~ 269 (372)
...+++|.+..+.++. ..|||||.|||.++..|++.+ ..|+++++++.|+....++ |.+ ..+..+
T Consensus 44 p~v~~~I~~ka~~k~t--------D~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPT--------DVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCCC--------CEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 3456666666666655 899999999999999999986 4588899999999888877 444 222222
Q ss_pred eccCCCCCCCCccEEEec
Q 017377 270 ISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 270 d~~~lp~~~~sFDlV~~~ 287 (372)
....+..+.-.||.++++
T Consensus 113 ~gD~lK~d~P~fd~cVsN 130 (315)
T KOG0820|consen 113 HGDFLKTDLPRFDGCVSN 130 (315)
T ss_pred ecccccCCCcccceeecc
Confidence 222233333468999985
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.63 E-value=0.00023 Score=66.99 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--------------------cCC-----------C-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--------------------RGL-----------P- 263 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--------------------rgl-----------~- 263 (372)
++.++||||||+-.+-..-+.. ....|+..|.++..++..++ .|- .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3478999999996553222222 34568889999877653221 010 0
Q ss_pred -e-EEEEeeccC-CCCCC-----CCccEEEeccccccccccHH---HHHHHHHhcccCCeEEEEEeCCCC
Q 017377 264 -A-MIGNFISRQ-LPYPS-----LSFDMVHCAQCGIIWDKKEG---IFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 264 -~-~~~~~d~~~-lp~~~-----~sFDlV~~~~~~~~~~~~~~---~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
+ .+...|..+ -|+.. ..||+|++.+|+.....+.. .+++++.++|||||+|++.+....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 1 122234333 23332 35999999999888776654 689999999999999999876443
No 244
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=97.63 E-value=6e-06 Score=61.62 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.++|++.+|+-||++.|++...+..||||.|++.|+..+..|..|...|.
T Consensus 5 eva~~~gvs~~tlr~y~~~gll~~~~~~~g~r~y~~~dv~~l~~i~~l~~~G~ 57 (69)
T PF13411_consen 5 EVAKLLGVSPSTLRYYEREGLLPPPRDENGYRYYSEEDVERLREIKELRKQGM 57 (69)
T ss_dssp HHHHHTTTTHHHHHHHHHTTSSTTBESTTSSEEE-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCcCHHHHHHHHHhcCcccccccCceeeccHHHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999999999999999999999887666
No 245
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.63 E-value=0.00019 Score=70.87 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=60.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC-C-------C---C----
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P-------Y---P---- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l-p-------~---~---- 277 (372)
.+|||++||+|.++..|++.. ..++++|+++.+++.|+++ ++ ++.+...|.... + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 359999999999999888763 3699999999999988875 44 345555554331 1 1 0
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 278 -~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...||+|+..--.-.+ ...++..+ ++|++.++++..
T Consensus 276 ~~~~~d~v~lDPPR~G~---~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGL---DPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCCCC---cHHHHHHH---HcCCcEEEEEcC
Confidence 1137988875221111 11244444 348888888855
No 246
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=97.63 E-value=1.2e-05 Score=65.95 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcccccccceeccCCCCcc-ccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDI-YSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.=+|.++|+|..|+-|||+.|++...+- .||||+|++.|+.++..|..|..-|.
T Consensus 4 ~eva~~~gvs~~tlR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 58 (108)
T cd04773 4 GELAHLLGVPPSTLRHWEKEGLLSPDREPETGYRVYDPSDVRDARLIHLLRRGGY 58 (108)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCceeeCHHHHHHHHHHHHHHHCCC
Confidence 3478999999999999999999987664 59999999999999999999988777
No 247
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.60 E-value=1.3e-05 Score=63.09 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccc-cchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIY-SSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
..=+|.++|++..|+=|||+.|++...|.. ||||+|++.|+..+..|..|...|. ++++...
T Consensus 4 i~evA~~~gvs~~tLR~ye~~Gll~p~r~~~~g~R~Ys~~dv~~l~~I~~Lr~~G~---sl~~i~~ 66 (88)
T cd01105 4 IGEVSKLTGVSPRQLRYWEEKGLIKSIRSDGGGQRKYSLADVDRLLVIKELLDEGF---TLAAAVE 66 (88)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceecCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 345789999999999999999999887777 5999999999999999999998887 5554443
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.60 E-value=0.00081 Score=65.44 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=66.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHHHHcCC----C-eEE--EEeeccC----CCC--CCCCc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALERGL----P-AMI--GNFISRQ----LPY--PSLSF 281 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~rgl----~-~~~--~~~d~~~----lp~--~~~sF 281 (372)
..++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ ..++..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 479999999999877766541 123678999999999988776522 2 222 2222211 221 12346
Q ss_pred cEEEecc-cccccccc-HHHHHHHHHh-cccCCeEEEEEeCCC
Q 017377 282 DMVHCAQ-CGIIWDKK-EGIFLIEADR-LLKPGGYFVLTSPES 321 (372)
Q Consensus 282 DlV~~~~-~~~~~~~~-~~~~L~el~r-vLkPGG~lvis~p~~ 321 (372)
.+|+.-+ ++-++.++ ...+|+++.+ .|+|||.|+|..-..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 7776654 33344322 2368999999 999999999976443
No 249
>cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.59 E-value=1.2e-05 Score=64.30 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
=||.++|++..|+-||++.|++.. .|..||||.|++.++.++..|+.|.. .|. ++++...
T Consensus 5 eva~~~gvs~~tlR~Ye~~GLl~p~~r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~---~l~~I~~ 66 (95)
T cd04780 5 ELSKRSGVSVATIKYYLREGLLPEGRRLAPNQAEYSEAHVERLRLIRALQQEGGL---PISQIKE 66 (95)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478999999999999999999986 67889999999999999999999975 567 5666665
No 250
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.57 E-value=0.00037 Score=69.09 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCC-C-CC-------------
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQL-P-YP------------- 277 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~l-p-~~------------- 277 (372)
.+|||++||+|.++..++... ..++++|.++.+++.|+++ ++ ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999887653 3689999999999988865 45 345555554331 1 10
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 278 -SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 278 -~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
...||+|+..--...+ ...++..+. +|++.++++..+
T Consensus 285 ~~~~~D~v~lDPPR~G~---~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL---DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCCCCC---cHHHHHHHH---ccCCEEEEEeCH
Confidence 1258999875221111 123444443 378888888653
No 251
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.56 E-value=3.2e-06 Score=68.01 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCCCCCccccCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTTRPKELDLCGK 91 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~c~~ 91 (372)
...-+|.++|++.+|+-||++.|++...|..+|||+|+++|+.++..|..|+. .|. ++++...
T Consensus 3 ~i~eva~~~gVs~~tLR~ye~~Gli~p~r~~~g~R~Ys~~dv~~l~~I~~L~~~~G~---~l~~i~~ 66 (98)
T cd01279 3 PISVAAELLGIHPQTLRVYDRLGLVSPARTNGGGRRYSNNDLELLRQVQRLSQDEGF---NLAGIKR 66 (98)
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCeeECHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 34568899999999999999999998888889999999999999999999988 677 5666665
No 252
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00041 Score=69.89 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=80.2
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC----eEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP----AMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~----~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
++|-+|||.-.+...+.+.|+ .+|+.+|+|+-.++.+..++.. ..+...++..+.|++++||+|+--+.+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 799999999999999988876 4578899999999888877532 3466678889999999999999987766654
Q ss_pred ccHH---------HHHHHHHhcccCCeEEEEEeC
Q 017377 295 KKEG---------IFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~~~~---------~~L~el~rvLkPGG~lvis~p 319 (372)
.+.. ..+.++.|+|+|||.++..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 3322 357899999999999887665
No 253
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.54 E-value=0.00051 Score=62.41 Aligned_cols=91 Identities=25% Similarity=0.189 Sum_probs=61.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|+|+-||.|.|+..+++.+ ....|.++|.++.+++..+++ ++. +.....|...+.- .+.||-|+++.-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-- 178 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-- 178 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T--
T ss_pred eEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh--
Confidence 789999999999999999843 235689999999999876654 444 4566777776655 789999998732
Q ss_pred cccccHHHHHHHHHhcccCCeEEE
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
.....+|..+.+++++||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 111237888999999999864
No 254
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=5.9e-05 Score=64.86 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=48.5
Q ss_pred EEEeeccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 266 IGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 266 ~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.+-.....+|.++|.|+|.+.+++.|...+. ..++++++|+|||||++-++.|....
T Consensus 33 lvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 33 LVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 33334567789999999999999999997444 47899999999999999999997665
No 255
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.52 E-value=0.00077 Score=70.12 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=35.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC-------ceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL-------MAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~-------~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+|||.|||+|.|...+++... ....+.++|+++..++.++.+
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 5899999999999988876521 136789999999999888765
No 256
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.48 E-value=0.001 Score=62.45 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccCC-CCCCC-CccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL-PYPSL-SFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~l-p~~~~-sFDlV 284 (372)
.+++||=||-|.|..+..+++.. ....++.+|+++..++.|++- ...+.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 45899999999999999998774 346789999999999998864 12344554443221 11223 89999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-..- ..... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 985321 21111 13589999999999999999874
No 257
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.47 E-value=0.0019 Score=64.36 Aligned_cols=104 Identities=20% Similarity=0.113 Sum_probs=74.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccCC----CCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQL----PYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~l----p~~~~sFDlV~~ 286 (372)
++|||+=|=||.|+.+.+..|. .+++.+|.|...++.|+++ |++ ..+.+.|+... .-...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 7899999999999999998764 3688899999999999886 543 34555554321 123458999998
Q ss_pred ccccc------cc--cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 287 AQCGI------IW--DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 287 ~~~~~------~~--~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
----+ .| ..+...++..+.++|+|||.+++++....-
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 41100 11 123346788999999999999999775433
No 258
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.40 E-value=0.00049 Score=66.23 Aligned_cols=88 Identities=9% Similarity=-0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCC---CeEEEEeecc
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGL---PAMIGNFISR 272 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl---~~~~~~~d~~ 272 (372)
..+++.+.+...++ ..++|.+||.|..+..+++.......|+|+|.++.+++.|+++-. .+.+...+..
T Consensus 7 ll~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHH
Confidence 45566677765554 689999999999999999885434679999999999999987632 3444444443
Q ss_pred CCC--CCC--CCccEEEeccccc
Q 017377 273 QLP--YPS--LSFDMVHCAQCGI 291 (372)
Q Consensus 273 ~lp--~~~--~sFDlV~~~~~~~ 291 (372)
.+. .++ .+||.|++..++.
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCcc
Confidence 332 111 2799999864433
No 259
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=97.40 E-value=3.2e-05 Score=57.46 Aligned_cols=53 Identities=13% Similarity=-0.027 Sum_probs=46.1
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.++|++.+|+-||++-|.+...+..+|||.|++.|+.++..|..+...|.
T Consensus 5 evA~~~gvs~~tlR~~~~~g~l~~~~~~~g~R~y~~~~l~~l~~i~~l~~~g~ 57 (67)
T cd04764 5 EVSEIIGVKPHTLRYYEKEFNLYIPRTENGRRYYTDEDIELLKKIKTLLEKGL 57 (67)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCCCCCCCceeeCHHHHHHHHHHHHHHHCCC
Confidence 47889999999999999654444678899999999999999999999888776
No 260
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0011 Score=60.20 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=80.9
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCC----e
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLP----A 264 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~----~ 264 (372)
|-.-...+.+..++.+..+. .+||.||-|.|.....+.+..+...- -++.++..++..++.|.. +
T Consensus 83 Mm~WEtpiMha~A~ai~tkg---------grvLnVGFGMgIidT~iQe~~p~~H~--IiE~hp~V~krmr~~gw~ek~nV 151 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAISTKG---------GRVLNVGFGMGIIDTFIQEAPPDEHW--IIEAHPDVLKRMRDWGWREKENV 151 (271)
T ss_pred hhhhhhHHHHHHHHHHhhCC---------ceEEEeccchHHHHHHHhhcCCcceE--EEecCHHHHHHHHhcccccccce
Confidence 33444567777777776322 68999999999998888877654333 379999999998887652 3
Q ss_pred EEEEee--ccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 265 MIGNFI--SRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 265 ~~~~~d--~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
.+.... -..-.++++.||-|.----..+. ++...+...+.|+|||+|.+-+-
T Consensus 152 iil~g~WeDvl~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 152 IILEGRWEDVLNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EEEecchHhhhccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 322211 01112678999999875322333 67777888999999999987653
No 261
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.40 E-value=0.00083 Score=60.22 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=75.0
Q ss_pred cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--e
Q 017377 191 DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--A 264 (372)
Q Consensus 191 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~ 264 (372)
...++.-+.+.+++... . -...++||+-||+|.++...+++|. ..++.+|.+...++..+++ +.. .
T Consensus 23 PT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~ 94 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKI 94 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGE
T ss_pred CCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcce
Confidence 33345555666666543 0 0227899999999999999999985 4578899999999877765 333 3
Q ss_pred EEEEeecc-CC---CCCCCCccEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCCC
Q 017377 265 MIGNFISR-QL---PYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD--RLLKPGGYFVLTSPES 321 (372)
Q Consensus 265 ~~~~~d~~-~l---p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~--rvLkPGG~lvis~p~~ 321 (372)
.+...|.. .+ ......||+|++--- +........++..+. .+|+++|.+++.....
T Consensus 95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeeccCHHHHHHhhcccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 44444421 12 124688999998622 222111245666665 7999999999987643
No 262
>cd04767 HTH_HspR-like_MBC Helix-Turn-Helix DNA binding domain of putative HspR-like transcription regulators. Putative helix-turn-helix (HTH) transcription regulator HspR-like proteins. Unlike the characterized HspR, these proteins have a C-terminal domain with putative metal binding cysteines (MBC). Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind spe
Probab=97.38 E-value=3.4e-05 Score=64.15 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccC-CCC
Q 017377 27 LSIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSL-GTT 81 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-g~~ 81 (372)
+.-+|.++|++.+|+-|||+.|++...| .+|||+|++.|+.+|..|..|.. .|.
T Consensus 4 I~eVA~~~GVs~~TLR~wE~~GLl~p~r-~~G~R~Ys~~dv~rL~~I~~L~~e~G~ 58 (120)
T cd04767 4 IGVVAELLNIHPETLRIWERHGLIKPAR-RNGQRLYSNNDLKRLRFIKKLINEKGL 58 (120)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCcC-CCCcEEECHHHHHHHHHHHHHHHHcCC
Confidence 4568899999999999999999998766 49999999999999999999976 556
No 263
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.33 E-value=0.0013 Score=63.38 Aligned_cols=95 Identities=23% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~ 290 (372)
.+.|||+|||+|.++...+..|. ..|.+++.|+ |.+.|++. .+. +.+..+..+++.+| +..|+|++.-.-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 47899999999999988887764 4578888764 55666543 222 23334445666665 569999986432
Q ss_pred ccccccHH--HHHHHHHhcccCCeEEEE
Q 017377 291 IIWDKKEG--IFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 291 ~~~~~~~~--~~L~el~rvLkPGG~lvi 316 (372)
+-. -+.+ .-....++.|+|.|..+=
T Consensus 254 ~mL-~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YML-VNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhh-hhHHHHHHHHHHHhhcCCCCcccC
Confidence 222 2221 122345699999999873
No 264
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=97.33 E-value=3.9e-05 Score=61.83 Aligned_cols=60 Identities=12% Similarity=-0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccc-cCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTL-SLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~c~~ 91 (372)
=+|.++|++.+|+-||++ .|++...|..||||+|++.|+..+..|..+ +..|. ++++...
T Consensus 5 EvA~~~gVs~~tLR~ye~~~gli~p~r~~~g~R~Yt~~di~~l~~I~~llr~~G~---~l~~i~~ 66 (99)
T cd04765 5 EVAEILGLPPHVLRYWETEFPQLKPVKRAGGRRYYRPKDVELLLLIKHLLYEKGY---TIEGAKQ 66 (99)
T ss_pred HHHHHHCcCHHHHHHHHHHcCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 378899999999999995 588887888999999999999999999985 55566 5666554
No 265
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=97.33 E-value=4.7e-05 Score=61.70 Aligned_cols=60 Identities=15% Similarity=0.012 Sum_probs=50.9
Q ss_pred HHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=+|.+.|++.+|+-||++.|++.. .|-.||||.|++.|+.++..|..+...|. ++++...
T Consensus 5 eva~~~gvs~~tlR~ye~~Gll~~~~~~~~g~R~y~~~di~~l~~i~~lr~~g~---~l~~i~~ 65 (103)
T cd01106 5 EVAKLTGVSVRTLHYYDEIGLLKPSRRTENGYRLYTEEDLERLQQILFLKELGF---SLKEIKE 65 (103)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 478999999999999999999965 56679999999999999999998888777 4544443
No 266
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.0046 Score=60.49 Aligned_cols=118 Identities=19% Similarity=0.067 Sum_probs=86.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+|||+=+|.|.|+..++..+... |.++|+++.+++..+++ ++. +....+|+...+...+.||-|+++..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-- 265 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-- 265 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC--
Confidence 689999999999999999987543 89999999999887765 333 34566777777766589999999743
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICW 348 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw 348 (372)
.....++....+.+++||.+.+.......... ......+..++.+.+.
T Consensus 266 ---~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~------~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 ---KSAHEFLPLALELLKDGGIIHYYEFVPEDDIE------ERPEKRIKSAARKGGY 313 (341)
T ss_pred ---CcchhhHHHHHHHhhcCcEEEEEeccchhhcc------cchHHHHHHHHhhccC
Confidence 22234788888899999999988775544111 0134556666666654
No 267
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.0026 Score=58.40 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=70.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeecc-CC-----CCCCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISR-QL-----PYPSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~-~l-----p~~~~sFDlV~ 285 (372)
+++||||.=||..+..++..-+....++++|+++...+.+.+. |+. +.+....+. .+ ..+.++||+++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 7899999999988877777666678899999999998776542 443 222222211 11 13678999998
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.- +|-++......++.++||+||.+++.-
T Consensus 155 vD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 VD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred Ec----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 63 554444578899999999999999753
No 268
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=97.30 E-value=5.3e-05 Score=56.26 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcccccccce-eccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 28 SIVALIAVLGSSTSNTLDF-VTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.-+|..+|++.+|+-||++ .|++...|..||||.|+++++..+..|..+..-|.
T Consensus 4 ~eva~~~gvs~~tlr~w~~~~g~~~~~r~~~~~r~yt~~~v~~l~~i~~l~~~g~ 58 (68)
T cd01104 4 GAVARLTGVSPDTLRAWERRYGLPAPQRTDGGHRLYSEADVARLRLIRRLTSEGV 58 (68)
T ss_pred HHHHHHHCcCHHHHHHHHHhCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 3578999999999999996 68888888889999999999999999999888666
No 269
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00064 Score=58.06 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=52.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
..++|+|||.|-+.....- +....+.|+|+++.+++.+..+ .+.+.+.+.+...+-+..+.||.++.+-
T Consensus 50 kkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 7899999999988744433 3346689999999999988765 3344555666777777779999999873
No 270
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.29 E-value=0.002 Score=61.74 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=66.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC---eEEEEeeccC-CC--CCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP---AMIGNFISRQ-LP--YPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~---~~~~~~d~~~-lp--~~~~sFDlV~~~ 287 (372)
++|||+=|=||.|+.+.+..|. ..++.+|.|..+++.|+++ +++ ..+...|+.. +. -..+.||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999999887653 4588999999999998876 543 3455444422 11 024689999984
Q ss_pred ---cc--cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 288 ---QC--GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 288 ---~~--~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+. -.....+...++..+.++|+|||.+++....
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 1111123346788899999999999877663
No 271
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.21 E-value=0.0029 Score=57.73 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=63.4
Q ss_pred ccccc-hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------
Q 017377 188 LVFDG-VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (372)
Q Consensus 188 ~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------ 260 (372)
..|.. .......+.+.+...++ ...+|||||.|......+-.. ......|+++.+...+.|...
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~~--------dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTPD--------DVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--TT---------EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCCC--------CEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 45532 23445556666666555 789999999999866655431 123468999999887655431
Q ss_pred -----CCC---eEEEEeeccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 -----GLP---AMIGNFISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 -----gl~---~~~~~~d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
|.. +.+..+|..+.++.. ..-|+|+++.. -+.++....|.+...-||+|-+++-..+
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 222 223333322211110 34699999864 3445555677888889999987664333
No 272
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.18 E-value=0.0031 Score=57.85 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=66.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHH----HHHHHHcCCCeEEEEeeccCCC----CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQ----VQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~----v~~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~~~~ 289 (372)
.+||-+|.++|+...++++--.....|.+++.|+.. ++.|++|. ++.....|+. .| .--+.+|+|++. +
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~D-V 151 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQD-V 151 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEEE--
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEec-C
Confidence 799999999999999998863334568999999844 56677663 4443333443 22 112479999986 2
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.-++..+.++.++...||+||+++++.-
T Consensus 152 --aQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 152 --AQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp --SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 2334455688899999999999999864
No 273
>PRK15043 transcriptional regulator MirA; Provisional
Probab=97.18 E-value=8.4e-05 Score=69.17 Aligned_cols=56 Identities=11% Similarity=-0.000 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcccccccc-eeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 26 FLSIVALIAVLGSSTSNTLD-FVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
.+.-+|.+.|++..|+=||| +.|++...|..||||+|++.|+.++..|..+..-|.
T Consensus 5 tIgeVA~~~GVs~~TLR~wErr~GLL~P~Rt~~G~R~Ys~~dv~rL~~I~~l~~~G~ 61 (243)
T PRK15043 5 TIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGV 61 (243)
T ss_pred CHHHHHHHHCcCHHHHHHHHHhcCCCCCccCCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 45568899999999999999 699999999999999999999999999998776666
No 274
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.18 E-value=0.002 Score=61.01 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCCeEEEEe
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLPAMIGNF 269 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~~~~~~~ 269 (372)
.....+.+.+.+....+ ..|||||+|+|.++..|++.+ ..++++|+++.+++..+++ ..++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 45678888888876555 789999999999999999986 5688999999999988885 345777777
Q ss_pred eccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccC
Q 017377 270 ISRQLPYPS---LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKP 310 (372)
Q Consensus 270 d~~~lp~~~---~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkP 310 (372)
|...+..+. +.-..|+++-- ++. ...++.++...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 877776554 45567777622 222 22355555553333
No 275
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.15 E-value=0.0039 Score=67.14 Aligned_cols=103 Identities=14% Similarity=-0.007 Sum_probs=67.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcC-----------------------------------------CceeEEEEeeCCHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLK-----------------------------------------LMAVCVAVYEATGSQVQL 256 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~-----------------------------------------~~~~~v~gvD~s~~~v~~ 256 (372)
..++|-+||+|++....+... .....++|+|+++.+++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 689999999999987765420 011368999999999999
Q ss_pred HHHc----CCC--eEEEEeeccCCCCC--CCCccEEEecccc-cccc--ccHHHHHH---HHHhcccCCeEEEEEeCC
Q 017377 257 ALER----GLP--AMIGNFISRQLPYP--SLSFDMVHCAQCG-IIWD--KKEGIFLI---EADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 257 A~~r----gl~--~~~~~~d~~~lp~~--~~sFDlV~~~~~~-~~~~--~~~~~~L~---el~rvLkPGG~lvis~p~ 320 (372)
|+++ |+. +.+...|..+++.+ .++||+|+++--. ..+. .+...+.. +..+...+|+.+++.++.
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8876 553 45666677766544 3589999998221 1111 12222333 334444489998887764
No 276
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.14 E-value=0.01 Score=58.01 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
..++|||||++|.|+..|+++|. .|+++|..+ +-.... ....+.....+.....-+.+.+|+|+|--+ +.
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e~ 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----EK 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecc-----cC
Confidence 47999999999999999999874 689999654 222222 222344444443333222678999999733 55
Q ss_pred HHHHHHHHHhcccCC--eEEEEEeC
Q 017377 297 EGIFLIEADRLLKPG--GYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPG--G~lvis~p 319 (372)
|..+..-|.+.|..| ..+|+..-
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEE
Confidence 556666677777655 45555543
No 277
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.14 E-value=0.0001 Score=59.19 Aligned_cols=53 Identities=15% Similarity=-0.028 Sum_probs=48.9
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
=+|.+.|++.+|+-||++.|++...+..+|||+|++.|+.++..+..|...|.
T Consensus 5 eva~~~gi~~~tlr~~~~~Gll~~~~~~~g~r~y~~~dv~~l~~i~~l~~~g~ 57 (100)
T cd00592 5 EVAKLLGVSVRTLRYYEEKGLLPPERSENGYRLYSEEDLERLRLIRRLRELGL 57 (100)
T ss_pred HHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCcccCHHHHHHHHHHHHHHHcCC
Confidence 37889999999999999999999888899999999999999999999987666
No 278
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.014 Score=52.34 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=77.9
Q ss_pred cccchhHHHHHHHHHHccC-CCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----C--
Q 017377 189 VFDGVKDYSRQIAEMIGLG-TDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----G-- 261 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----g-- 261 (372)
.-...++.-+.+.+++... . ...++||+=+|+|.++...+++|. ..++.+|.+...++..+++ +
T Consensus 22 ~RPT~drVREalFNil~~~~i-------~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~ 92 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEI-------EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE 92 (187)
T ss_pred cCCCchHHHHHHHHhcccccc-------CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc
Confidence 3334445555666666542 1 227899999999999999999975 4567799999999887766 3
Q ss_pred CCeEEEEeeccCC-CCCCC--CccEEEecccccccc-ccHHHHH--HHHHhcccCCeEEEEEeCCC
Q 017377 262 LPAMIGNFISRQL-PYPSL--SFDMVHCAQCGIIWD-KKEGIFL--IEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 262 l~~~~~~~d~~~l-p~~~~--sFDlV~~~~~~~~~~-~~~~~~L--~el~rvLkPGG~lvis~p~~ 321 (372)
..+.+...|+... +-... .||+|+.--- ++.. -+....+ .+-...|+|||.+++.....
T Consensus 93 ~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 93 GEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2333443444322 22223 4999998632 2221 1112222 23567899999999986643
No 279
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.012 Score=54.40 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=88.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEE-EeeccCCC---CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIG-NFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~-~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
+.+||||+-||.|+..++++|. ..|.++|..-.++..-.+....+... ..+...+. +. +..|+|+|--+++..
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFISL 157 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFISL 157 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhhH
Confidence 8999999999999999999974 56899999999887766665554432 22222222 22 368899997554443
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEe-CCCCC-CCC------C-CcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTS-PESKP-RGS------S-SSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~-p~~~~-~~~------~-~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+|-.+..+++|||.++.-. |-... ++. . .+..+...-..+.++++..+|...--
T Consensus 158 ----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 158 ----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 458899999999998887644 33222 111 1 12234556777888888889987643
No 280
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.06 E-value=0.002 Score=64.12 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=69.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeeccCCC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFISRQLP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~~~lp-~~~~sFDlV~~~~~~~ 291 (372)
-+|||+.||+|..+..++.+......|+++|+++..++.++++ ++. +.+.+.|+..+- ...+.||+|...- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4799999999999999998732225689999999999888765 333 444444443321 1235799998752 2
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+..++..+.+.+++||++.++..
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2223489999999999999999843
No 281
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=97.06 E-value=0.00016 Score=49.93 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=40.7
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLEL 73 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 73 (372)
=+|.++|++..|+-+|++-|++...+..+|+|+|++.|+.++..|
T Consensus 5 e~a~~~gv~~~tlr~~~~~g~l~~~~~~~~~~~y~~~~v~~l~~i 49 (49)
T cd04761 5 ELAKLTGVSPSTLRYYERIGLLSPARTEGGYRLYSDADLERLRLI 49 (49)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCEEeCHHHHHHhhhC
Confidence 478899999999999999999987788889999999999998765
No 282
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=97.06 E-value=0.00011 Score=54.69 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=48.2
Q ss_pred HHHHHHHHhcccccccceeccCCCC-ccccchhhhhHHHhHHHHhhccccCCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKP-DIYSSYRRLKEQAAVDYLELRTLSLGTT 81 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
-+|.+.|++.+|+-+|++-|++... +..+|||+|++.|+.++..+..|..-|.
T Consensus 5 eva~~~gvs~~tlr~~~~~gli~~~~~~~~g~r~y~~~dl~~l~~i~~lr~~g~ 58 (70)
T smart00422 5 EVAKLAGVSVRTLRYYERIGLLPPPIRTEGGYRLYSDEDLERLRFIKRLKELGF 58 (70)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCEecCHHHHHHHHHHHHHHHcCC
Confidence 4788999999999999999999976 8899999999999999999999876666
No 283
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.012 Score=55.34 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=77.4
Q ss_pred HHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEee
Q 017377 197 SRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFI 270 (372)
Q Consensus 197 ~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d 270 (372)
+..|..++...++ .+|+|-|.|+|+++.+++..-..+..+...|.++.-.+.|++. ++. +.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 4467788888888 8999999999999999998754556788899999887777653 543 4444445
Q ss_pred ccCCCC--CCCCccEEEeccccccccccHHHHHHHHHhcccCCe-EEEEEeC
Q 017377 271 SRQLPY--PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGG-YFVLTSP 319 (372)
Q Consensus 271 ~~~lp~--~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG-~lvis~p 319 (372)
.....| .+..+|.|+.- + +.|-.++--+..+||.+| +++-..|
T Consensus 166 Vc~~GF~~ks~~aDaVFLD-----l-PaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLD-----L-PAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccCCccccccccceEEEc-----C-CChhhhhhhhHHHhhhcCceEEeccH
Confidence 555444 35789988764 2 333346666777998876 5555555
No 284
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=96.98 E-value=8.6e-05 Score=48.98 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccccccceeccC-CCCccccchhhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSS-SKPDIYSSYRRL 62 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~ 62 (372)
=+|.++|++..|+=|||+.|+| ...|-.||||+|
T Consensus 4 e~A~~~gvs~~tlR~ye~~Gll~~~~r~~~g~R~Y 38 (38)
T PF00376_consen 4 EVAKLLGVSPRTLRYYEREGLLPPPERTEGGYRRY 38 (38)
T ss_dssp HHHHHHTS-HHHHHHHHHTTSS-SSEETTTS-EEE
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCccCCCCeecC
Confidence 3789999999999999999999 789999999987
No 285
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0029 Score=58.06 Aligned_cols=120 Identities=23% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCCC-eEEEEeeccCCCCCCCCccEEEeccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGLP-AMIGNFISRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl~-~~~~~~d~~~lp~~~~sFDlV~~~~~~~ 291 (372)
..+++|||+|.|.-|..|+-..+ ...++-+|....-+.+- .+.+++ +.+.+..++.+.-...-||+|.|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 47999999999999998874433 34488899987655433 344777 77777666666422111999999744
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
.+...++.-+...+++||.++..-.. .........+.......+.+..
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~----------~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL----------AGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH----------hhhhhHHHHHHHHHhhcCcEEE
Confidence 33344667788999999987643221 2233445555555555555543
No 286
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.011 Score=58.42 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=72.4
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCc-eeEEEEeeCCHHHHHHHHHc----CCCe-EEEEeeccCCC--CCC-CCccEEEec-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLM-AVCVAVYEATGSQVQLALER----GLPA-MIGNFISRQLP--YPS-LSFDMVHCA- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~-~~~v~gvD~s~~~v~~A~~r----gl~~-~~~~~d~~~lp--~~~-~sFDlV~~~- 287 (372)
.+|||+.++.|.=+.++++.... ...|+++|.++.-++...++ |+.. .....|...++ .+. +.||.|+.-
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECC
Confidence 89999999999988888887332 34469999999877655543 6653 44455554443 222 359999862
Q ss_pred -----ccc-------cccccc--------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 -----QCG-------IIWDKK--------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 -----~~~-------~~~~~~--------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+++ ..+... ...+|....++|||||.++.++.....
T Consensus 238 PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 238 PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 111 111111 235789999999999999999987655
No 287
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=96.93 E-value=0.00017 Score=63.99 Aligned_cols=61 Identities=8% Similarity=-0.152 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 28 SIVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
.-+|..+|+|.+|+-||++-|.+...|..||||+|++.|+..|..|..+..-|. +++++..
T Consensus 4 ~evA~~lGVS~~TLRrw~k~g~L~~~R~~~G~R~y~~~dl~~L~~I~~l~~~Gm---~i~~i~~ 64 (175)
T PRK13182 4 PFVAKKLGVSPKTVQRWVKQLNLPCEKNEYGHYIFTEEDLQLLEYVKSQIEEGQ---NMQDTQK 64 (175)
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCcCCCCCEEECHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 357899999999999999888888899999999999999999999998887777 5666643
No 288
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.90 E-value=0.01 Score=56.57 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCcHHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHc-------CCCeEEEEeeccCCCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVS-LKLMAVCVAVYEATGSQVQLALER-------GLPAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~r-------gl~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
+++|+=||||.=-++..+.. +......++++|+++..++.+++- +-...+...|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997666655554 323456789999999999888642 2335566666666655557899999874
Q ss_pred cccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWD-KKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~-~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+..+. ++...+|..+.+.++||..+++...
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 34433 3556799999999999999998743
No 289
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.83 E-value=0.00041 Score=56.01 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=38.2
Q ss_pred EEeCCCCcHHHHHHHhcCCce--eEEEEeeCCH---HHHHHHHHcCCC--eEEEEeeccCC--CCCCCCccEEEeccccc
Q 017377 221 LDVGCGFGSFGAHLVSLKLMA--VCVAVYEATG---SQVQLALERGLP--AMIGNFISRQL--PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 221 LDIGCG~G~~~~~L~~~~~~~--~~v~gvD~s~---~~v~~A~~rgl~--~~~~~~d~~~l--p~~~~sFDlV~~~~~~~ 291 (372)
||||+..|..+..+++.-... ..++++|..+ ..-+..++.++. +.+...+..+. .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999988887652121 3688999998 344444433332 44444433221 133578999998742
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
|-.+.....+..+.+.|+|||.+++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 322444567889999999999999865
No 290
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0058 Score=55.50 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=63.6
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--------CCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--------YPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--------~~~~sFDlV~~~~ 288 (372)
...|+|+|+.+|+++..+++.......|+++|+.+.-. -..+.+...|...-+ +....+|+|+|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 37899999999999999998744444588999876421 112444444544322 3445589999742
Q ss_pred c---ccccc-ccH------HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 289 C---GIIWD-KKE------GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 289 ~---~~~~~-~~~------~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
. .-++. +.. ..++.-...+|+|||.+++-..-.
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 1 11221 111 134566678999999999987643
No 291
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.81 E-value=0.0041 Score=53.14 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=36.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHh-----cCCceeEEEEeeCCHHHHHHHHHc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVS-----LKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~-----~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 347899999999999999988 3 446799999999998877665
No 292
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0085 Score=53.81 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=63.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH----HcCCCeEEEEeeccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL----ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~----~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
++|||+|.|+|..+...+..|. ..++..|+.+..++.+. .+|+.+.+...+ +-..+..||+|+...+++..
T Consensus 81 krVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d---~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHAD---LIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeecc---ccCCCcceeEEEeeceecCc
Confidence 7999999999998888777754 33566788877765443 345555544333 22367889999999877665
Q ss_pred cccHHHHHHHHHhcccCCeEEEE-EeCCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVL-TSPES 321 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvi-s~p~~ 321 (372)
..-..++. +.+.|+..|..++ -+|..
T Consensus 156 -~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 156 -TEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred -hHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 33334566 6666655555444 44543
No 293
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.019 Score=56.87 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=83.5
Q ss_pred cccccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCce-------------------------
Q 017377 187 GLVFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMA------------------------- 241 (372)
Q Consensus 187 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~------------------------- 241 (372)
-..+++...+-+.++..+-...+ |.. ...++|-=||+|++.+..+-.+...
T Consensus 166 yR~~~g~ApLketLAaAil~lag--w~~--~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~ 241 (381)
T COG0116 166 YRVYDGPAPLKETLAAAILLLAG--WKP--DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLR 241 (381)
T ss_pred ccccCCCCCchHHHHHHHHHHcC--CCC--CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHH
Confidence 33445544555555554432222 111 1579999999999988776653210
Q ss_pred ------e-------EEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCCccEEEecccc-cccccc--H--
Q 017377 242 ------V-------CVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLSFDMVHCAQCG-IIWDKK--E-- 297 (372)
Q Consensus 242 ------~-------~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~sFDlV~~~~~~-~~~~~~--~-- 297 (372)
. .++|.|+++.+++.|+.+ |+. +.+.+.|...++-+-+.+|+|+||--. .-.... .
T Consensus 242 ~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~ 321 (381)
T COG0116 242 EEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAK 321 (381)
T ss_pred HHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHH
Confidence 1 277999999999998866 655 667778888777554899999998210 111111 1
Q ss_pred --HHHHHHHHhcccCCeEEEEEeC
Q 017377 298 --GIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 298 --~~~L~el~rvLkPGG~lvis~p 319 (372)
..+...+++.++--+.+++++.
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcc
Confidence 2355677788888888888866
No 294
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0061 Score=61.80 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=76.4
Q ss_pred ccccch----hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---
Q 017377 188 LVFDGV----KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER--- 260 (372)
Q Consensus 188 ~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r--- 260 (372)
.+|+.. +.+++...+.+...++ .+|||+=||.|.|+..|+++. ..|+|+|+++.+++.|+++
T Consensus 269 sF~Q~N~~~~ekl~~~a~~~~~~~~~--------~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 269 SFFQVNPAVAEKLYETALEWLELAGG--------ERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred CceecCHHHHHHHHHHHHHHHhhcCC--------CEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHH
Confidence 466543 3445555555555443 789999999999999999653 6699999999999888765
Q ss_pred -CCC-eEEEEeeccCCCC---CCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 261 -GLP-AMIGNFISRQLPY---PSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 261 -gl~-~~~~~~d~~~lp~---~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
++. +.+...+++++.- ....+|.|+..--.-. .+ ..+++.+. -++|-..+++|..
T Consensus 338 n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~-~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 338 NGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--AD-REVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred cCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CC-HHHHHHHH-hcCCCcEEEEeCC
Confidence 554 5666666665542 2357899987511111 11 12444444 4567777888754
No 295
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.55 E-value=0.0073 Score=59.73 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC-eEEEEeec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP-AMIGNFIS 271 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~-~~~~~~d~ 271 (372)
..|||+-||.|.|+..|++.. ..|+|+|+++.+++.|+++ ++. +.+..+++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 379999999999999999864 4589999999999988764 554 55555443
No 296
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.52 E-value=0.0083 Score=57.52 Aligned_cols=126 Identities=25% Similarity=0.296 Sum_probs=80.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeE-EEEeeccCC-C-CCCCCccEEEec---
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAM-IGNFISRQL-P-YPSLSFDMVHCA--- 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~-~~~~d~~~l-p-~~~~sFDlV~~~--- 287 (372)
..|||+.+|.|.=+..+++.-.....+++.|++..-++..+++ |+... ....|.... + .....||.|+.-
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 7899999999999999988744456799999999888665543 66543 333444433 1 233469999872
Q ss_pred -cc--cccc-------c-cc-------HHHHHHHHHhcc----cCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHh
Q 017377 288 -QC--GIIW-------D-KK-------EGIFLIEADRLL----KPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEK 345 (372)
Q Consensus 288 -~~--~~~~-------~-~~-------~~~~L~el~rvL----kPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~ 345 (372)
.. +..- . .+ ...+|....+.+ ||||+++.++...... | ..+.++.|.++
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e------E---NE~vV~~fl~~ 237 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE------E---NEEVVEKFLKR 237 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG------G---THHHHHHHHHH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH------H---HHHHHHHHHHh
Confidence 11 1111 0 11 125788999999 9999999998855431 1 12345556555
Q ss_pred c-CeeEEe
Q 017377 346 I-CWSLIA 352 (372)
Q Consensus 346 l-cw~~~~ 352 (372)
. .+++..
T Consensus 238 ~~~~~l~~ 245 (283)
T PF01189_consen 238 HPDFELVP 245 (283)
T ss_dssp STSEEEEC
T ss_pred CCCcEEEe
Confidence 4 555543
No 297
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.013 Score=57.01 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH--cCC-----CeEEEEeeccCCCCC-CCCccEEEec
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE--RGL-----PAMIGNFISRQLPYP-SLSFDMVHCA 287 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~--rgl-----~~~~~~~d~~~lp~~-~~sFDlV~~~ 287 (372)
.+.+|||+|.|.|.-...+-+--+.--+++-++.|+..-+.... .++ +..-.++...+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 34679999999997554443332222334445667655443221 111 111122233455554 3568888776
Q ss_pred ccccccccc--HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKK--EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~--~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.-+.+...+ ....++.+..++.|||.|+|..++...
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 655665322 124688889999999999999886544
No 298
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.055 Score=52.02 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---HHHHHc----C-C---
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---QLALER----G-L--- 262 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~~A~~r----g-l--- 262 (372)
+..++++....+.... .....+||=-|||.|.++..|+..|+. +-|-+.|--|+ .++... + .
T Consensus 132 kpii~~l~~lfp~~~~----~r~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IY 204 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGK----ERTKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIY 204 (369)
T ss_pred hhHHHHHHhhCCCccc----cccCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 3455566655554221 112357999999999999999987753 45556666664 233311 0 0
Q ss_pred CeEE--------------------EEe----eccCC-------------CCCCCCccEEEeccccccccccHHHHHHHHH
Q 017377 263 PAMI--------------------GNF----ISRQL-------------PYPSLSFDMVHCAQCGIIWDKKEGIFLIEAD 305 (372)
Q Consensus 263 ~~~~--------------------~~~----d~~~l-------------p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~ 305 (372)
|... ..+ ....+ +-..++||+|+..+ ++.-..+.-.+|..+.
T Consensus 205 PfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 205 PFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIY 283 (369)
T ss_pred eeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHH
Confidence 0000 000 00000 01124699999864 3444455567899999
Q ss_pred hcccCCeEEEEEeCCCCCCCC----CCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 306 RLLKPGGYFVLTSPESKPRGS----SSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 306 rvLkPGG~lvis~p~~~~~~~----~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.+|+|||+++=.+|.-.+-.. .+....+-..+++...++.++|++..++
T Consensus 284 ~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 284 KILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999988776544111 1111233446777888899999998776
No 299
>cd04778 HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=96.44 E-value=0.00081 Score=61.98 Aligned_cols=60 Identities=8% Similarity=-0.117 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhccccCCCCCCCccccCCC
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELRTLSLGTTRPKELDLCGK 91 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~ 91 (372)
=||..+|+|-.|.=|||+.|++...|..+|||.|++.++.+|..|..|+.-|. ++++...
T Consensus 6 elA~~~Gvs~~tIR~Ye~~GLL~p~r~~~~~r~Y~~~~v~rL~~I~~l~~~G~---~L~~I~~ 65 (219)
T cd04778 6 DLARAAGTTVRNVRAYQDRGLLPPPRRRGRVAIYNDSHLARLRLINQLLERGY---TLAHIAE 65 (219)
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCcccCCCCcccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 47889999999999999999999888889999999999999999999997666 4555443
No 300
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.29 E-value=0.1 Score=47.63 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=73.2
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCCCCCCC-ccEEEecccccc
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLPYPSLS-FDMVHCAQCGII 292 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp~~~~s-FDlV~~~~~~~~ 292 (372)
|.||||--|.+..+|++++.. ..++++|+++.-++.|++. ++. +.+...|.-. +++.+. .|.|+.+++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH-
Confidence 689999999999999999854 5688999999999988865 433 3333333211 233443 79998875411
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-...+|.+....++..-.|++.-. . ....++.+....+|.+..+.
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lILqP~-~-------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLILQPN-T-------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEEEEES-S--------------HHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHhhHHHhccCCeEEEeCC-C-------------ChHHHHHHHHHCCCEEEEeE
Confidence 2223567777777776667777532 2 23567888889999988653
No 301
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.21 E-value=0.0086 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=34.6
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
++||||||.|.++..++..+.. ..++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHH
Confidence 4899999999999999887643 4799999999999877654
No 302
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.18 E-value=0.034 Score=52.56 Aligned_cols=105 Identities=11% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCeEEEeCCCCc--HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---CCC--eEEEEeeccCC-------------C
Q 017377 216 GVQSVLDVGCGFG--SFGAHLVSLKLMAVCVAVYEATGSQVQLALER---GLP--AMIGNFISRQL-------------P 275 (372)
Q Consensus 216 ~~~~VLDIGCG~G--~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---gl~--~~~~~~d~~~l-------------p 275 (372)
+++..||||||-- .....++..-.....|.-+|+++..+..++.. ... ..+..+|..+. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5689999999953 24555555433457788899999988755543 223 45555554331 1
Q ss_pred CCCCCccEEEecccccccc--ccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWD--KKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~--~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
| ++.+=+++ ..++++.. +++..++..+...|.||.+|+|+.....
T Consensus 148 ~-~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 F-DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp T-TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred C-CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 2 23333443 33555554 3567899999999999999999987553
No 303
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.81 E-value=0.051 Score=46.46 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=61.3
Q ss_pred EEEeeCCHHHHHHHHHc----CC--CeEEEEeeccCCC--CCCCCccEEEeccccccccc-----cH---HHHHHHHHhc
Q 017377 244 VAVYEATGSQVQLALER----GL--PAMIGNFISRQLP--YPSLSFDMVHCAQCGIIWDK-----KE---GIFLIEADRL 307 (372)
Q Consensus 244 v~gvD~s~~~v~~A~~r----gl--~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~~~~~-----~~---~~~L~el~rv 307 (372)
|.+.|+.+.+++.++++ +. .+.+...+-+.+. .+.+++|+|+-|.+...-.+ .+ -.+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 78899999999888776 33 2454444333333 23358999999866544322 11 2689999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 017377 308 LKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC 347 (372)
Q Consensus 308 LkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc 347 (372)
|+|||.+.+....-.. +-..+.+.+.+|.+.+.
T Consensus 82 L~~gG~i~iv~Y~GH~-------gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVVYPGHP-------GGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE--STC-------HHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEEeCCCC-------CCHHHHHHHHHHHHhCC
Confidence 9999999999876544 55667778888887654
No 304
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.80 E-value=0.062 Score=52.68 Aligned_cols=105 Identities=20% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC--------CeEEEEeeccC-CCCCCCCccE
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL--------PAMIGNFISRQ-LPYPSLSFDM 283 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl--------~~~~~~~d~~~-lp~~~~sFDl 283 (372)
.++||=+|.|.|.-...+.+. +....|+-+|.++.|++.++.. .+ .+.+.+.|+.+ +.-..+.||.
T Consensus 290 a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 478999999999999999876 3457899999999999998843 11 12333333322 1223468999
Q ss_pred EEeccccccccccH-----HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 284 VHCAQCGIIWDKKE-----GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 284 V~~~~~~~~~~~~~-----~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|+...- -.-++.. ..+..-+.|.|+++|.+++....+..
T Consensus 369 vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 369 VIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 987521 1111111 23566788999999999998665544
No 305
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.71 E-value=0.019 Score=50.51 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccCCC--CCCCC-ccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQLP--YPSLS-FDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~lp--~~~~s-FDlV~~~ 287 (372)
.+|+|+.||.|..+..++... ..|+++|+++..++.|+.+ |+. +.+...|..++. +.... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999874 4588999999999988865 543 566666644331 11122 8999986
No 306
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.68 E-value=0.058 Score=48.51 Aligned_cols=133 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHH----------HHHHHHHcCCC-eEEEEeeccCCCCCCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGS----------QVQLALERGLP-AMIGNFISRQLPYPSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~----------~v~~A~~rgl~-~~~~~~d~~~lp~~~~sFDlV~ 285 (372)
.+|+|+=.|.|.|+..+... +.. ..|+++-..+. +-..+++.... ..........++ +.+..|+++
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~ 127 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP 127 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence 89999999999999998875 322 23444333222 11122222111 111101111222 333444444
Q ss_pred e--------ccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCC--CCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 286 C--------AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRG--SSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 286 ~--------~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~--~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
. +.. +| ......+..++++.|||||.+++.+.....-. ......++-.-..+..-.+..+|++..+.
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 3 322 22 24445789999999999999999876544310 00111222222334444577788887663
No 307
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.67 E-value=0.033 Score=50.41 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
-.+.|||||.|.+...|+...+. ..+.|+++-...-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHH
Confidence 35899999999999999988655 458888886655544443
No 308
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.021 Score=58.15 Aligned_cols=80 Identities=26% Similarity=0.289 Sum_probs=57.1
Q ss_pred cceeeecCCCcccccch----hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH
Q 017377 177 ENQIAFHSEDGLVFDGV----KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS 252 (372)
Q Consensus 177 ~~~~~F~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~ 252 (372)
+-.++|+- +.+|+.- +.++..+.++..+..+ ..+||+-||||.++..++.. +..|.|+++++.
T Consensus 350 ~ltF~iSp--~AFFQ~Nt~~aevLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~---~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 350 GLTFRISP--GAFFQTNTSAAEVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARG---VKRVIGVEISPD 416 (534)
T ss_pred CeEEEECC--chhhccCcHHHHHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhcc---ccceeeeecChh
Confidence 34445554 4577533 4456666677666665 78999999999999999875 356899999999
Q ss_pred HHHHHHHc----CCC-eEEEEe
Q 017377 253 QVQLALER----GLP-AMIGNF 269 (372)
Q Consensus 253 ~v~~A~~r----gl~-~~~~~~ 269 (372)
.++.|+.+ |+. +.+.++
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hcchhhhcchhcCccceeeeec
Confidence 99988765 443 556655
No 309
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.60 E-value=0.067 Score=53.29 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH----cCCCeE-EEEeeccCCC---CCCCCccEEEe-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE----RGLPAM-IGNFISRQLP---YPSLSFDMVHC- 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~----rgl~~~-~~~~d~~~lp---~~~~sFDlV~~- 286 (372)
...+|||+.+.+|.=+.+++..-..+..|.+.|.+..-+....+ .|+... ..+.|...+| |+. +||-|..
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLD 319 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLD 319 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeec
Confidence 45799999999998777776653334568899999887765443 376543 4556666555 554 8999984
Q ss_pred ---ccccccc-------c----------ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 287 ---AQCGIIW-------D----------KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 287 ---~~~~~~~-------~----------~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.-... . .-..++|.....++++||+||.++.....
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 4311111 0 11235788889999999999999886654
No 310
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=95.56 E-value=0.0039 Score=42.29 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhh
Q 017377 29 IVALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLEL 73 (372)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 73 (372)
=+|.+++++++|+..|.+-|.+...+..+|+++|+..|+..++.|
T Consensus 5 e~a~~lgvs~~tl~~~~~~g~~~~~~~~~~~~~~~~~ei~~~~~~ 49 (49)
T cd04762 5 EAAELLGVSPSTLRRWVKEGKLKAIRTPGGHRRFPEEDLERLLGI 49 (49)
T ss_pred HHHHHHCcCHHHHHHHHHcCCCCceeCCCCceecCHHHHHHHHhC
Confidence 367889999999999999999887777789999999999998764
No 311
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.51 E-value=0.045 Score=48.96 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=67.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CC-CeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GL-PAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl-~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
.++.|+|.|+|.++...++. .-.|.+++.++.....|.++ |. ++.+.+.|+....| ..-|+|+|...-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 57999999999988776654 35688999999988888887 22 35566777777766 56799999632111
Q ss_pred cc-ccHHHHHHHHHhcccCCeEEE
Q 017377 293 WD-KKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 293 ~~-~~~~~~L~el~rvLkPGG~lv 315 (372)
.. +....++..+...||-+|.++
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccc
Confidence 11 233357778888999998887
No 312
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.43 E-value=0.042 Score=53.81 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=66.9
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|+=+|+| .|..+..+++. ..+.|+++|.++.-.+.|++.|.+..+...+....+--.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------
Confidence 667766665 56778888875 23779999999999999999988765542222222211234999997622
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+....+.||+||.+++...+.
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCCC
Confidence 236778889999999999998764
No 313
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.34 E-value=0.21 Score=49.95 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=33.2
Q ss_pred CCCCCCccEEEecccccccccc-H-------------------------------------HHHHHHHHhcccCCeEEEE
Q 017377 275 PYPSLSFDMVHCAQCGIIWDKK-E-------------------------------------GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 275 p~~~~sFDlV~~~~~~~~~~~~-~-------------------------------------~~~L~el~rvLkPGG~lvi 316 (372)
-||+++.+++|++.+ .||... | ..+|+-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 389999999999987 677421 0 1123333456889999999
Q ss_pred EeCCCCC
Q 017377 317 TSPESKP 323 (372)
Q Consensus 317 s~p~~~~ 323 (372)
+......
T Consensus 236 ~~~Gr~~ 242 (386)
T PLN02668 236 VCLGRTS 242 (386)
T ss_pred EEecCCC
Confidence 9876643
No 314
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.14 E-value=0.15 Score=47.80 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCeEEEEeeccCCCCCCCCccEEEecccccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPAMIGNFISRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+.+|+|||||.=-++....... ....++|+|++..++++...- +++......|...- .+....|+.+..-. ++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLllK~-lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-PPKEPADLALLLKT-LP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-CCCCCcchhhHHHH-HH
Confidence 5899999999999998877654 335899999999999876543 66655555554333 24577999998754 33
Q ss_pred ccccHH-HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 293 WDKKEG-IFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 293 ~~~~~~-~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
..+... ..-.++...++ .-.+++|.|...-..+. .--....-..++.++..-.|..-
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~-~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRN-KGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES--------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCc-cccccCHHHHHHHhcccCCceee
Confidence 322221 12122223332 23566676654331110 00111223345666666677744
No 315
>PRK13699 putative methylase; Provisional
Probab=95.00 E-value=0.077 Score=49.19 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTV 364 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~ 364 (372)
..++.|++|+|||||.+++..... . ...+....++.+|.+. +.+||.|+.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~----------~---~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWN----------R---VDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccc----------c---HHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 357899999999999988743210 0 1122333466777754 556899875
No 316
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.59 E-value=0.13 Score=49.64 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC--eE
Q 017377 193 VKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP--AM 265 (372)
Q Consensus 193 ~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~--~~ 265 (372)
...|+..+.+.+...... ....-++||||+|....-..|..+- ...+++|.|+++..++.|++. ++. +.
T Consensus 82 R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 347888888887654330 0113589999999875443343331 247799999999999998864 333 33
Q ss_pred EEEeecc-C----CCCCCCCccEEEecccccc
Q 017377 266 IGNFISR-Q----LPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 266 ~~~~d~~-~----lp~~~~sFDlV~~~~~~~~ 292 (372)
+...... . +.-+++.||+.+|+--++.
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 3222111 1 1123468999999854443
No 317
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.24 Score=44.86 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH----HHHHHc-CCCeEEEEeeccCCC----CCCCCccEEEe
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV----QLALER-GLPAMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v----~~A~~r-gl~~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
...+||=+|+.+|+...++++--. ...+.+++.|+... ..|.+| ++-..+. |+. .| .--+..|+|.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~--DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILE--DAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeec--ccC-CcHHhhhhcccccEEEE
Confidence 348999999999999999887632 35588999998664 456655 2223333 332 22 11245888887
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-- .-+.....+..++...|++||+++++.-.
T Consensus 152 DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 152 DV---AQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred ec---CCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 51 12233345788899999999988887543
No 318
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.85 E-value=0.17 Score=46.19 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHH-HHHHc---CCCeEEEEeeccCCC-------C-CCCCc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQ-LALER---GLPAMIGNFISRQLP-------Y-PSLSF 281 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~-~A~~r---gl~~~~~~~d~~~lp-------~-~~~sF 281 (372)
|++|+|+|.-.|..+..+++. -.....|.++|++-.... .|.+. ...+.+..+|..+.. . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 479999999998877666543 213467999999543332 22222 124555555544321 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 282 DMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 282 DlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+|+-- + .|..++....|+....+++||+|+++.+..
T Consensus 113 vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 113 VLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred eEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 344443 3 455577777888899999999999987653
No 319
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.77 E-value=0.92 Score=42.57 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=59.8
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH--HHHHHc--------CCCeEEEEee--c-cCCCCCCCC-ccE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV--QLALER--------GLPAMIGNFI--S-RQLPYPSLS-FDM 283 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v--~~A~~r--------gl~~~~~~~d--~-~~lp~~~~s-FDl 283 (372)
.+||++|.|+|.-+..++.... ..+.-.|...... +..... |-.+....++ . ....+-... ||+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 6799999999988877776532 3344456554332 222111 2122222221 1 111111122 999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 284 VHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 284 V~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
|+++.|+++- .....++.-+...|-.+|.+++..+-
T Consensus 166 ilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 9999998775 44455888888899999977777664
No 320
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.31 E-value=0.51 Score=46.36 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcC---------------CceeEEEEeeCCHHHHH-----------HHHHcCCCeE-EE-
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLK---------------LMAVCVAVYEATGSQVQ-----------LALERGLPAM-IG- 267 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~---------------~~~~~v~gvD~s~~~v~-----------~A~~rgl~~~-~~- 267 (372)
+.-+|+|+||..|..+..+.+.- .....+.--|.-.+-.. .... ..++. .+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 34689999999999887776531 12345666665432211 1111 12222 11
Q ss_pred EeeccCCCCCCCCccEEEeccccccc
Q 017377 268 NFISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 268 ~~d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
..+...--||++|.|+++++.+ .||
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHW 119 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHW 119 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB
T ss_pred CchhhhccCCCCceEEEEEech-hhh
Confidence 1233333489999999999976 666
No 321
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.20 E-value=0.88 Score=47.06 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=76.4
Q ss_pred HHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcC---CceeEEEEeeCCHHHHHHHHHc----CCC--eE
Q 017377 195 DYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLK---LMAVCVAVYEATGSQVQLALER----GLP--AM 265 (372)
Q Consensus 195 ~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~---~~~~~v~gvD~s~~~v~~A~~r----gl~--~~ 265 (372)
...+.+++.+...+. .+|.|-.||+|.+.....+.- .....+.|.|.++.....|+.+ |++ +.
T Consensus 173 ~v~~liv~~l~~~~~--------~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 173 EVSELIVELLDPEPR--------NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred HHHHHHHHHcCCCCC--------CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 345566666665333 589999999998866655431 1126689999999999888865 444 23
Q ss_pred EEEeeccCCCC-----CCCCccEEEecccc--cccc---------------------c-cHHHHHHHHHhcccCCeEEEE
Q 017377 266 IGNFISRQLPY-----PSLSFDMVHCAQCG--IIWD---------------------K-KEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 266 ~~~~d~~~lp~-----~~~sFDlV~~~~~~--~~~~---------------------~-~~~~~L~el~rvLkPGG~lvi 316 (372)
....++..-|. ..+.||.|+++--+ -.|. . ....++..+...|+|||...+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 33333333332 34679999987221 1111 0 113578899999999998887
Q ss_pred EeCCC
Q 017377 317 TSPES 321 (372)
Q Consensus 317 s~p~~ 321 (372)
..|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 77644
No 322
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.10 E-value=1.1 Score=44.58 Aligned_cols=100 Identities=20% Similarity=0.107 Sum_probs=64.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-C-----CC-CCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-L-----PY-PSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-l-----p~-~~~sFDlV~~~~~ 289 (372)
.+||.+|||. |..+..+++.... ..++++|.++...+.+++.+- ..+......+ + .+ ..+.+|+|+-.-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 6899999987 8888888876321 347888999999999988731 1222111110 0 12 2346999987421
Q ss_pred cc--------------cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GI--------------IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~--------------~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +-..+....+.++.+.|+|+|.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 0012234578999999999999998764
No 323
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.05 E-value=0.059 Score=47.01 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCCccEEEecccccccc-------ccH---HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 278 SLSFDMVHCAQCGIIWD-------KKE---GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~-------~~~---~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++||.+.|..++.|.. -++ ...+.++.++|||||.++++.|.-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 57899999988877763 111 25889999999999999999996654
No 324
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.82 E-value=3 Score=41.63 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=63.2
Q ss_pred CeEEEeCCCCcH----HHHHHHhc--CCceeEEEEeeC----CHHHH--------HHHHHcCCCeEEEEeecc---C---
Q 017377 218 QSVLDVGCGFGS----FGAHLVSL--KLMAVCVAVYEA----TGSQV--------QLALERGLPAMIGNFISR---Q--- 273 (372)
Q Consensus 218 ~~VLDIGCG~G~----~~~~L~~~--~~~~~~v~gvD~----s~~~v--------~~A~~rgl~~~~~~~d~~---~--- 273 (372)
-.|+|+|-|.|. +...|+.+ ++....||+++. +...+ ++|+..|++..+...-.. .
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 579999999985 34444444 567899999999 66555 456666888776653111 1
Q ss_pred --CCCCCCCccEEEeccccccccc------cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 274 --LPYPSLSFDMVHCAQCGIIWDK------KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 274 --lp~~~~sFDlV~~~~~~~~~~~------~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+...++..=+|-|...+++..+ ++...+....|-|+|.-. ++.+...+.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv-v~~E~ea~~ 248 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV-VLVEQEADH 248 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE-EEEeecCCC
Confidence 2233343334445555555542 233456677778999944 444444433
No 325
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.82 E-value=0.64 Score=45.04 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.-..+++.+.+...++ ..++|.=+|.|..+..+++.... ..++|+|.++.+++.|+++
T Consensus 6 pVll~Evl~~L~~~~g--------giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPD--------GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred chhHHHHHHhcCcCCC--------CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 4456677777766555 68999999999999999987433 6799999999999998875
No 326
>PHA01634 hypothetical protein
Probab=92.55 E-value=1.1 Score=37.84 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE--eeccCCCCCCCCccEEEe
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN--FISRQLPYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~--~d~~~lp~~~~sFDlV~~ 286 (372)
++|+|||.+-|..+.+++-+|. ..|.+++.++...+..++.--...+.+ ......+-.-+.||+..+
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 7999999999999999998874 458899999999988877411111111 012233333456887764
No 327
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.52 E-value=1.9 Score=37.89 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=75.4
Q ss_pred eCCCCcHHHHHHHhcCC--ceeEEEEeeCCHHHHH----------HHHHcCCCeEEEEeeccCCC----CCCCCccEEEe
Q 017377 223 VGCGFGSFGAHLVSLKL--MAVCVAVYEATGSQVQ----------LALERGLPAMIGNFISRQLP----YPSLSFDMVHC 286 (372)
Q Consensus 223 IGCG~G~~~~~L~~~~~--~~~~v~gvD~s~~~v~----------~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~ 286 (372)
||=|.=+|+..|+.... .....+..|..+...+ ..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 67777788999988732 2333455666554443 223345555543 3555554 35689999998
Q ss_pred cccccccc-------cc-------HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEe
Q 017377 287 AQCGIIWD-------KK-------EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIA 352 (372)
Q Consensus 287 ~~~~~~~~-------~~-------~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~ 352 (372)
++- |.. .+ ...++..+.++|+++|.+.|+...... -..|+ ++.+++..+..+..
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Ccccc-HHHHHHhcCCEEEE
Confidence 853 332 11 124688899999999999999764433 14576 46888888887765
Q ss_pred e
Q 017377 353 Q 353 (372)
Q Consensus 353 ~ 353 (372)
.
T Consensus 150 ~ 150 (166)
T PF10354_consen 150 K 150 (166)
T ss_pred E
Confidence 4
No 328
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.41 E-value=0.94 Score=43.34 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=61.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+||..|+| .|..+..+++.. ...++.++.++...+.+++.++...+..-+ ... ....+.+|+|+.....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCCC-
Confidence 678888876 477777777752 244778899999999988777654332111 000 1245679998854211
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.++.+.|+++|.++....
T Consensus 243 ------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 243 ------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------HHHHHHHHHHhhcCCEEEEECC
Confidence 2367888999999999997654
No 329
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.38 E-value=0.16 Score=46.83 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCc----e-e---EEEEeeCCHHHHHHHHHcCCC-eEEEEeeccCCC--------CCC
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLM----A-V---CVAVYEATGSQVQLALERGLP-AMIGNFISRQLP--------YPS 278 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~----~-~---~v~gvD~s~~~v~~A~~rgl~-~~~~~~d~~~lp--------~~~ 278 (372)
+..+|+|+.+..|+++..|.++-.. . . .|+++|+.+.. .++ +....+|+.... |..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------PI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------PIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------ccCceEEeecccCCHhHHHHHHHHhCC
Confidence 3578999999999999998875211 1 1 27788875432 222 334444444322 455
Q ss_pred CCccEEEecc-----ccccccccHH-----HHHHHHHhcccCCeEEEEE
Q 017377 279 LSFDMVHCAQ-----CGIIWDKKEG-----IFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 279 ~sFDlV~~~~-----~~~~~~~~~~-----~~L~el~rvLkPGG~lvis 317 (372)
..-|+|+|-+ ++|.+.+... .+|.-...+|||||.|+--
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 6899999963 2333322221 3566678899999999854
No 330
>PRK11524 putative methyltransferase; Provisional
Probab=92.31 E-value=0.39 Score=45.97 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCCCccEEEeccc--c-c-------ccc-----ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 276 YPSLSFDMVHCAQC--G-I-------IWD-----KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 276 ~~~~sFDlV~~~~~--~-~-------~~~-----~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
+++++||+|++.-- . . .+. +-....+.++.|+|||||.+++..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 56788888888511 0 0 010 111357899999999999999863
No 331
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=92.18 E-value=0.39 Score=44.68 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=61.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCH----HHHHHHHHcC-CCeEEEEeeccCCCC----CCCCccEEEecc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG----SQVQLALERG-LPAMIGNFISRQLPY----PSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~----~~v~~A~~rg-l~~~~~~~d~~~lp~----~~~sFDlV~~~~ 288 (372)
.+||-+|+++|+.-....+---....|.+++.|. ..+..|++|. +-.++. |+ +.|. .-.-.|+|++.
T Consensus 158 sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE--DA-rhP~KYRmlVgmVDvIFaD- 233 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE--DA-RHPAKYRMLVGMVDVIFAD- 233 (317)
T ss_pred ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec--cC-CCchheeeeeeeEEEEecc-
Confidence 7899999999998888877632334577888875 4466777662 222233 22 2221 11246666654
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..-++....+..+..-.||+||.++++.-.
T Consensus 234 --vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 234 --VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred --CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 122233345667888999999999998653
No 332
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.17 E-value=4.8 Score=37.58 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCCeEEEEeeccCCCCC---CCCccEEEecccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLPAMIGNFISRQLPYP---SLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~~~~~~~d~~~lp~~---~~sFDlV~~~~~~ 290 (372)
++||=+|=+.-...+..+. + ....|+.+|+++..+++ |.+.|+++.....|. +.|+| .++||++++.-
T Consensus 46 k~il~lGDDDLtSlA~al~-~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~Dl-R~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALT-G-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDL-RDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp -EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---T-TS---TTTSS-BSEEEE----
T ss_pred CEEEEEcCCcHHHHHHHhh-C-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecc-cccCCHHHhcCCCEEEeCC--
Confidence 7899999665443322222 2 23568889999999864 556688877776665 34554 37999999862
Q ss_pred cccc-ccHHHHHHHHHhcccCCe-EEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 291 IIWD-KKEGIFLIEADRLLKPGG-YFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 291 ~~~~-~~~~~~L~el~rvLkPGG-~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
.++ +-...++..-...||.-| ..+++-. ... .....|-.++.....++.-+.
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~~~-------~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-HKE-------ASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE--TTT---------HHHHHHHHHHHHTS--EEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-cCc-------CcHHHHHHHHHHHHHCCcCHH
Confidence 222 223457888888898766 4444322 211 234667777777777765443
No 333
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.06 E-value=4.5 Score=37.23 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe--EEEEeeccCCCCC-CCCccEEEeccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA--MIGNFISRQLPYP-SLSFDMVHCAQCGI 291 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~--~~~~~d~~~lp~~-~~sFDlV~~~~~~~ 291 (372)
.+.||||--|.+..+|.+.+.. ..+++.|+++.-++.|... ++.- ....+|. ..++. +..+|+|+.+++--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 4999999999999999998754 5577899999888887654 3322 2222232 22333 34799998874311
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeee
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQ 354 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~ 354 (372)
.-...+|.+-..-|+.=-++++. |+.+. ..++.|.....|.+..+.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeeee
Confidence 22234666666666633344444 32222 235677778888887663
No 334
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.83 E-value=0.11 Score=42.43 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=26.9
Q ss_pred CccEEEeccccccc-----ccc-HHHHHHHHHhcccCCeEEEEEeC
Q 017377 280 SFDMVHCAQCGIIW-----DKK-EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 280 sFDlV~~~~~~~~~-----~~~-~~~~L~el~rvLkPGG~lvis~p 319 (372)
.||+|.|..+ .-| .++ ...+++.+.+.|+|||+|++.-.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4899999643 323 222 23689999999999999999754
No 335
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.77 E-value=0.3 Score=49.43 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCeEEEeCCCCcH--HHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-------CCCeEEE-EeeccCCCCCC-CCccEE
Q 017377 216 GVQSVLDVGCGFGS--FGAHLVSLKLMAVCVAVYEATGSQVQLALER-------GLPAMIG-NFISRQLPYPS-LSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~--~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-------gl~~~~~-~~d~~~lp~~~-~sFDlV 284 (372)
.++.++|+|.|.|. +++..+... ..-.++.||.+.+|....... |-+..-. ++--..+|.+. +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34678888887664 444444443 234577899999998765532 1111111 22234566554 459999
Q ss_pred EeccccccccccH--HHHHH-HHHhcccCCeEEEEEeCCCCC
Q 017377 285 HCAQCGIIWDKKE--GIFLI-EADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 285 ~~~~~~~~~~~~~--~~~L~-el~rvLkPGG~lvis~p~~~~ 323 (372)
+|++.+++..... ..+.. -+.+..++||++++..+...-
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 9999888775322 12333 367788999999999876544
No 336
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.36 E-value=0.5 Score=45.24 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=69.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc---------CCCeEEEEeeccCC--CCCCCCccEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER---------GLPAMIGNFISRQL--PYPSLSFDMV 284 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r---------gl~~~~~~~d~~~l--p~~~~sFDlV 284 (372)
.+++||=||-|.|.+....+.+ .....+.-+|++++.++..++- +..+.+.-+|...+ ....++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5689999999999998888877 4556678889999888876653 22233332232111 1347899999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEeC
Q 017377 285 HCAQCGIIWDKK----EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 285 ~~~~~~~~~~~~----~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.-.. ....+. ...++..+.+.||+||+++...-
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 98633 222221 12467789999999999998864
No 337
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.34 E-value=0.19 Score=40.95 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEA 249 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~ 249 (372)
.....|||||+|.+.-.|.+.|..+. |+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~---GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGW---GIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcc---cccc
Confidence 35799999999999999888887654 4454
No 338
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.18 E-value=5 Score=38.16 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=47.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC--CCCccEEEec
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP--SLSFDMVHCA 287 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~--~~sFDlV~~~ 287 (372)
+|+|+-||.|.+...+...|+ ..+.++|+++..++..+.+.... ....|...+... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeC
Confidence 589999999999888888774 34788999999998877664332 223344444321 3569999985
No 339
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.45 E-value=1.2 Score=45.96 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCC-----CeEEEEeeccCCCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGL-----PAMIGNFISRQLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl-----~~~~~~~d~~~lp~~~~sFDlV~~~~ 288 (372)
+..|+=+|.|-|-+....++. -.....+.+++-++.++-..+.+.. .+.+...|+...+-|....|++++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 456888999999876555432 2245778999999998865554432 3666777888888556889999986
Q ss_pred ccccccccH--HHHHHHHHhcccCCeEEEE
Q 017377 289 CGIIWDKKE--GIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 289 ~~~~~~~~~--~~~L~el~rvLkPGG~lvi 316 (372)
.+-.+.++. ...|.-+-+.|||+|+.+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 334444433 3589999999999987663
No 340
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.99 E-value=2.6 Score=43.84 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc---------CCC----------
Q 017377 216 GVQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR---------QLP---------- 275 (372)
Q Consensus 216 ~~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~---------~lp---------- 275 (372)
.+.+|+=+|||.- ..+...++. ....|.++|.++.-.+.+++.|......+.... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3579999999974 455555554 123588999999999999988766332221100 000
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 276 YPS--LSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 276 ~~~--~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
+.+ +.+|+|+..-. ..-...+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999998733 22222343346999999999999987654
No 341
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.83 E-value=2.8 Score=41.46 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=65.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCce---eEEEEeeCCHHHHHHH---HHcCC--CeEEEEeeccCCC---------CCCCC
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMA---VCVAVYEATGSQVQLA---LERGL--PAMIGNFISRQLP---------YPSLS 280 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~---~~v~gvD~s~~~v~~A---~~rgl--~~~~~~~d~~~lp---------~~~~s 280 (372)
.+|||+.+..|+=++.|++..... .-+++-|.+..-+... .++-. ...+...++...| .....
T Consensus 157 ~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (375)
T KOG2198|consen 157 DKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLK 236 (375)
T ss_pred CeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhh
Confidence 799999999999998888763321 2477889887655332 22211 1222222322222 33457
Q ss_pred ccEEEec-----ccc-------cc--cc--------ccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 281 FDMVHCA-----QCG-------II--WD--------KKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 281 FDlV~~~-----~~~-------~~--~~--------~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
||-|.|- .+. .. |. .-.-.+|..-.++||+||.+|.|+..-++
T Consensus 237 fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 237 FDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred cceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 9999873 100 00 11 11124688889999999999999986665
No 342
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.55 E-value=1.6 Score=42.38 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEe--eccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNF--ISRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~--d~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+||=+||| .|.++..+++. +. ..++++|.++..++.+++.|....+..- +.....-..+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 678878875 34455555554 32 2477889999999999988865433210 11111111235899886522
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+....+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1256778899999999998765
No 343
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.15 E-value=0.7 Score=37.95 Aligned_cols=84 Identities=25% Similarity=0.252 Sum_probs=60.9
Q ss_pred CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-------C-CCCCCccEEEeccccccccccH
Q 017377 226 GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-------P-YPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 226 G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-------p-~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|.|.++..+++... ..++++|.++.-.+.+++.|....+. .... . .+.+.+|+|+-.-. .
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~---~~~~~~~~~i~~~~~~~~~d~vid~~g------~- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVID---YSDDDFVEQIRELTGGRGVDVVIDCVG------S- 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEE---TTTSSHHHHHHHHTTTSSEEEEEESSS------S-
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccc---ccccccccccccccccccceEEEEecC------c-
Confidence 46888888888733 67889999999999999988444332 2221 1 23457999985422 1
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+.+...+|+|||.+++.....
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 237888999999999999998765
No 344
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=88.76 E-value=0.14 Score=51.15 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=52.5
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHhcccccccceeccCC-CCccccchhhhhHHHhHHHHhhcccc
Q 017377 12 ILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSS-KPDIYSSYRRLKEQAAVDYLELRTLS 77 (372)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~ 77 (372)
++.|.++-... .+.+.=+|..+|++.+|+=|||+-|++. ..|..+|||.|++.++..+..+-.++
T Consensus 22 ~~~p~~~k~~~-~~~i~eva~~~gv~~~tlr~~e~~~~~~~~~r~~~g~r~yt~~di~~l~~~~~~~ 87 (387)
T TIGR03453 22 LFPPNARKTLR-KFTSGEVAKLLGVSDSYLRQLSLEGKGPEPETLSNGRRSYTLEQINELRRHLAQR 87 (387)
T ss_pred cCCCccccccc-cCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCceeeCHHHHHHHHHHHHhc
Confidence 45566553333 4677779999999999999999888765 57889999999999999999887664
No 345
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=88.71 E-value=3.2 Score=41.52 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCCe---EEEEeeccCCC-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLPA---MIGNFISRQLP-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~~---~~~~~d~~~lp-~~~~sFDlV~~~~~ 289 (372)
-+|||.=+|+|.=+...+........|+.-|+|+++++.++++ ++.. .+...|+..+= .....||+|-.-
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD-- 128 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD-- 128 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE---
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC--
Confidence 5899999999998888777632346788999999999888765 4443 44444544332 246789999753
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+ -.+..+|....+.++.||++.++...
T Consensus 129 --Pf-GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 --PF-GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ---S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred --CC-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 22 22334899999999999999998653
No 346
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=88.54 E-value=0.2 Score=47.54 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE---------------eecc---CCCC-C
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN---------------FISR---QLPY-P 277 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~---------------~d~~---~lp~-~ 277 (372)
.++|||+|||.|.-+......+. ..+...|.+...++.- +++..... .... +.-+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~---t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLV---TLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred CceeEecCCcccccchhhhhhcc--ceeeeEecchhheeee---cccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 37899999999998888877653 4566678777665211 11111000 0000 0011 1
Q ss_pred CC--CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 278 SL--SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 278 ~~--sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+ .||+|.++..++........+......+++++|.+++..-....
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yF 239 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYF 239 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhcc
Confidence 12 68888888766655322222356677788999999887554333
No 347
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.42 E-value=3.4 Score=37.30 Aligned_cols=107 Identities=11% Similarity=-0.001 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEE
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVH 285 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~ 285 (372)
+++.|+|+|.-.|..+...++. ......+.++|++-...+-+..+-..+.+...+..+.. ...+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 3478999999888766665543 22446788889887665544443444556555443322 1112123334
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 286 CAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
|-.+-+++ +..-+.|+-..++|..|-|+++.+.+.+.
T Consensus 149 ilDsdHs~-~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 149 ILDSDHSM-EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EecCCchH-HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 44443333 55555677788999999999999887765
No 348
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.48 E-value=2.3 Score=38.22 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=31.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
..|||.=||+|+.+......+ ....|+|+++..++.|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 689999999999988877765 448899999999998864
No 349
>KOG2730 consensus Methylase [General function prediction only]
Probab=87.27 E-value=0.92 Score=41.76 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC--eEEEEeeccC----CCCCCCCccEEEec
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP--AMIGNFISRQ----LPYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~--~~~~~~d~~~----lp~~~~sFDlV~~~ 287 (372)
..|+|.-||.|..+...+.+++. |.++|+++.-+..|+.+ |++ +.+.++|..+ +.+...-+|+|..+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 57999999999999999888654 77899999999988876 665 4455555322 33444446677655
No 350
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=86.99 E-value=0.88 Score=40.87 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC--------CCCCCCCccEEEecc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ--------LPYPSLSFDMVHCAQ 288 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~--------lp~~~~sFDlV~~~~ 288 (372)
..+|||+||.+|+++....++.....-+.|+|+-. ..--.|....... |..+ -..|+...|+|++-.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~-dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGN-DVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCccccccc-ccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 37999999999999988887742334478888732 1111233222221 2211 014678899999852
Q ss_pred ccccc-----cccH------HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 289 CGIIW-----DKKE------GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 289 ~~~~~-----~~~~------~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
. ..- .+.. ..+|.-....++|+|.++.-......
T Consensus 145 a-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 145 A-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred C-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 1 111 1111 12344445678899999988765443
No 351
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.85 E-value=6.7 Score=35.76 Aligned_cols=94 Identities=30% Similarity=0.302 Sum_probs=60.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~~ 291 (372)
.+||-+|+|. |..+..+++.. ...+++++.++...+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCC--
Confidence 7899999985 66666666652 255788899988888887766432221110 000 112467999986522
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
.. ..+..+.+.|+++|.++......
T Consensus 211 ----~~-~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 211 ----GP-ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ----CH-HHHHHHHHhcccCCEEEEEccCC
Confidence 10 25667788999999999876543
No 352
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.66 E-value=7.3 Score=37.74 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=57.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=.|+| .|.++..+++. ....+++++.++.-.+.+++.|....+.. ... ..+.+|+++-..+ .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~------~ 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP------A 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC------c
Confidence 688888875 34455555554 22357778999988999998887643321 111 1245887654322 1
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|++||.+++...
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEec
Confidence 1367888899999999998764
No 353
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=14 Score=34.87 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCeEEEeCCCCcHHHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc------CCCeEEEEeec----cCCCCCCCCcc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER------GLPAMIGNFIS----RQLPYPSLSFD 282 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r------gl~~~~~~~d~----~~lp~~~~sFD 282 (372)
..+.+|+|.|+..=++.|++. +. ..+++++|+|...+....+. ++++.-.+.+. ..+| ...--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 378999999999888777664 32 36789999999988543221 33333222221 1222 22222
Q ss_pred EE-EeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 283 MV-HCAQCGIIWDKKE-GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 283 lV-~~~~~~~~~~~~~-~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++ +....+-.+.+++ ..+|..+...|+||-++++-+-..+.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 22 2223334444443 46899999999999999987654443
No 354
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.52 E-value=2.7 Score=43.62 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec---------cCC--C--------C
Q 017377 217 VQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---------RQL--P--------Y 276 (372)
Q Consensus 217 ~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~---------~~l--p--------~ 276 (372)
+.+|+=+|+|.- ..+..++.. ....++.+|.++...+.+++.|......+... ..+ + +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 479999999975 555555544 22347889999998888887665432221100 000 0 1
Q ss_pred C--CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEE
Q 017377 277 P--SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 277 ~--~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lv 315 (372)
+ -..+|+|++. +++.-.+.+..+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 2569999876 444444455557888999999999987
No 355
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.06 E-value=2 Score=39.98 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred cccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCC
Q 017377 189 VFDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLP 263 (372)
Q Consensus 189 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~ 263 (372)
+..+...|++.+++.+....+. .. ....++||||-|.--.--.+ ...--..+++|.|+++..++.|+.. ++.
T Consensus 53 pvPgRAdYih~laDLL~s~~g~-~~-~~~i~~LDIGvGAnCIYPli-G~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 53 PVPGRADYIHHLADLLASTSGQ-IP-GKNIRILDIGVGANCIYPLI-GVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred CCCChhHHHHHHHHHHHhcCCC-CC-cCceEEEeeccCcccccccc-cceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence 4466788999999999766551 11 22358999998865432222 1111246789999999999888754 222
Q ss_pred e--EEEEe-ecc----CCCCCCCCccEEEeccccc
Q 017377 264 A--MIGNF-ISR----QLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 264 ~--~~~~~-d~~----~lp~~~~sFDlV~~~~~~~ 291 (372)
. .+..- +.. .+--..+.||+++|+--++
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred hheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 1 11100 111 1111257899999996544
No 356
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.93 E-value=9.6 Score=36.37 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||-+|+| .|..+..+++. ....++.++.++...+.+++.+....+.........-..+.+|+|+....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-------
Confidence 678888886 66666666655 22457778889988888876664433221110000001246898885421
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.++.+.|+++|.++....
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEECC
Confidence 01267788899999999987653
No 357
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=84.12 E-value=8.6 Score=37.36 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 196 YSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..+++.+.+...++ ..++|.=-|.|..+..+++.... ..++|+|-++.+++.|+++
T Consensus 8 ll~Evl~~L~~~~~--------g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 8 LLKEVLEALNPKPG--------GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER 63 (310)
T ss_dssp THHHHHHHHT--TT---------EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC
T ss_pred cHHHHHHhhCcCCC--------ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH
Confidence 45667777776555 68999999999999999987544 7899999999999999865
No 358
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.00 E-value=8.1 Score=37.73 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=64.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---------CCCCCCccEEEec
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---------PYPSLSFDMVHCA 287 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---------p~~~~sFDlV~~~ 287 (372)
.+||=+|+|+ |..+...++. +-...|+.+|.++.-++.|++-|..+.......... -+....||..+-.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 7899999997 4444444443 344678889999999999999777655432221101 1223458888854
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 288 QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 288 ~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.. .+. .++.....+|+||.+++.+.....
T Consensus 250 sG-~~~------~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 250 SG-AEV------TIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred cC-chH------HHHHHHHHhccCCEEEEeccCCCc
Confidence 22 222 455567789999999988765544
No 359
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.62 E-value=7 Score=37.73 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=52.6
Q ss_pred ccchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 190 FDGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 190 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
+....-+.+++.+.+...++ ...+|.=-|.|..+..++++.....+++++|-++.+++.|+++
T Consensus 5 ~~HipVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred CCccchHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 34445567788888877776 7899999999999999999976667799999999999999886
No 360
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=83.54 E-value=9.8 Score=36.51 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee--ccCCCCCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI--SRQLPYPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d--~~~lp~~~~sFDlV~~~~~~~~~ 293 (372)
.+||-.|||. |..+..+++. |. ..+++++.++...+.+++.+....+..-+ ...+....+.+|+|+....
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 6788888764 5566666654 32 14677888888888777766543221100 1112112245899986422
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 241 -~--~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -A--PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -C--HHHHHHHHHHHhcCCEEEEEec
Confidence 1 1257788999999999997653
No 361
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=83.48 E-value=2.7 Score=42.44 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE 259 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~ 259 (372)
..|..-+...+..... -...+..-|||||.|||.++...+..+. -.+++++.-..|++.|++
T Consensus 46 iky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARK 107 (636)
T ss_pred HHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHH
Confidence 3555556555554332 0111224699999999999888777763 348999999999988875
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.38 E-value=12 Score=35.64 Aligned_cols=92 Identities=25% Similarity=0.239 Sum_probs=56.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC----CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL----PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l----p~~~~sFDlV~~~~~~~ 291 (372)
.+||-+|+| .|..+..+++. +.. .+..++.++...+.+++.+....+. .+.... ..+.+.+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 688888865 24455555554 322 2566788888888887777652221 111110 113467999986521
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 236 ---~--~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ---V--PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ---C--hHHHHHHHHHHhcCCEEEEEec
Confidence 1 1367788899999999987654
No 363
>PRK11524 putative methyltransferase; Provisional
Probab=83.16 E-value=4.7 Score=38.49 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=34.9
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..|||-=||+|+.+......+ -.+.|+|+++..++.|++|
T Consensus 210 D~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 210 DIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 689999999999888777665 4488999999999999988
No 364
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=82.73 E-value=4.9 Score=39.78 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-----CCCeEEEEeeccCCCCC-CCCccEEEecccc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-----GLPAMIGNFISRQLPYP-SLSFDMVHCAQCG 290 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-----gl~~~~~~~d~~~lp~~-~~sFDlV~~~~~~ 290 (372)
+.+|||.=+|+|.=+..++...... .++.-|+|+.+++.++++ +.+....+.|+..+=.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC---
Confidence 3789999999999888887763332 678899999999998876 22333333333322211 3678887432
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.+. .+.-++....+..+.||++.++......
T Consensus 129 -PFG-SPaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 129 -PFG-SPAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred -CCC-CCchHHHHHHHHhhcCCEEEEEeccccc
Confidence 232 2223888888899999999998665443
No 365
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.73 E-value=17 Score=34.68 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|. |.|.++..+++.. ...+++++.++...+.+++.|....+..-+.... ....+.+|+|+-.-.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 67887774 5778888887762 2457778888888999988776543321110000 012346898885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|++||.++....
T Consensus 217 -------~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 -------GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -------HHHHHHHHHHhCcCcEEEEecc
Confidence 1245778899999999997653
No 366
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=81.56 E-value=8 Score=37.61 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=55.2
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=+|||. |.++..++++-.-...++++|.++.-++.+++.+.. .. . ..+. ....+|+|+-.-.- ..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~--~~-~--~~~~-~~~g~d~viD~~G~----~~ 234 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET--YL-I--DDIP-EDLAVDHAFECVGG----RG 234 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce--ee-h--hhhh-hccCCcEEEECCCC----Cc
Confidence 6899899863 445555555311123577889999888888753322 11 1 1111 11248988854220 11
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.+..++|++||.+++...
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 12367888999999999998764
No 367
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.14 E-value=9 Score=37.31 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=56.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeC---CHHHHHHHHHcCCCeEEEEeeccCC--CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEA---TGSQVQLALERGLPAMIGNFISRQL--PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~---s~~~v~~A~~rgl~~~~~~~d~~~l--p~~~~sFDlV~~~~~~~ 291 (372)
.+||=+|+|. |.++..+++.. ...+++++. ++.-.+.+++.|... .+...... ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC--
Confidence 6788888863 66666666652 234666765 678888888877653 21111110 001246898886522
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..++|++||.+++...
T Consensus 248 ---~--~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ---V--PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---C--HHHHHHHHHHccCCcEEEEEec
Confidence 1 1267788999999999988664
No 368
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.05 E-value=5.3 Score=39.76 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=31.7
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL 258 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~ 258 (372)
+...|.|+|.|.|.++..|.-+ ....|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 4578999999999999888755 2366889999976665443
No 369
>PRK13699 putative methylase; Provisional
Probab=79.60 E-value=7.8 Score=35.82 Aligned_cols=40 Identities=20% Similarity=0.012 Sum_probs=34.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..|||-=||+|+.+....+.+ ..+.|+|+++...+.|.+|
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 689999999999988877765 3478999999999988876
No 370
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.49 E-value=3.9 Score=36.64 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcC-eeEEeeecceEEEEecC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKIC-WSLIAQQDETFIWQKTV 364 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lc-w~~~~~~~~~~iw~K~~ 364 (372)
....+.++.|+|||||.+++......... .....+.+..+ |... +.++|.|+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-----------~~~~~~~~~~g~~~~~----~~iiW~K~~ 88 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG-----------FLFELALEIFGGFFLR----NEIIWNKPN 88 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT-----------HHHHHHHHHHTT-EEE----EEEEEE-SS
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH-----------HHHHHHHHHhhhhhee----ccceeEecC
Confidence 34689999999999999999866433211 11222234445 6554 567999983
No 371
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.13 E-value=5.1 Score=39.61 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCeEEEeCCCCcHHHHHHHhcC-------CceeEEEEeeCCHHHHHHHHHc
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLK-------LMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~-------~~~~~v~gvD~s~~~v~~A~~r 260 (372)
+..++|||.|.|.++.-++..- ....++.-+++|+...+.-+++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 3689999999999998887641 2467788899999988766554
No 372
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.69 E-value=22 Score=34.73 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=59.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCCeEEEEeeccCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=.|+ |.|.++..+++.. ...+++++.++...+.++ +.|....+..-+...+ ....+.+|+|+-.-.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 68888887 4788888888762 245777888888888876 5676543321100010 011246898885422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|++||.+++...
T Consensus 238 --------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 238 --------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred --------HHHHHHHHHHhccCCEEEEECc
Confidence 1267788899999999997654
No 373
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.52 E-value=16 Score=35.09 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=56.1
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeE-EEEeeCCHHHHHHHHHcCCCeEEEEeec--cCC-C-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFIS--RQL-P-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~-v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~l-p-~~~~sFDlV~~~~~~~ 291 (372)
.+||=+|+| .|.++..+++.. ... +++++.++...+.+++.|....+..-+. ..+ . .....+|+|+-...
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g-- 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG-- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC--
Confidence 677777765 344555555542 233 7778999999999988776433221110 000 0 12346999985422
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|+++|.+++...
T Consensus 241 ----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 1 1255677889999999997654
No 374
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.17 E-value=13 Score=36.18 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=57.9
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||=.|+|. |..+..+++.. .. .++++|.++...+.+++.|....+. ....+. ......+|+|+-.-.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 6788888753 45555566542 23 4778899999999998877643322 111110 012245898885421
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.. ..+.+..+.+++||.+++....
T Consensus 255 ------~~-~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 255 ------RP-ETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred ------CH-HHHHHHHHHhccCCEEEEECCC
Confidence 11 2567778899999999987643
No 375
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.88 E-value=12 Score=37.94 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=56.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
++|+=+|+|. |...+.+++. ..+.++.+|.++.-.+.|.+.|.... ..+ ..+ ..+|+|+..-. .
T Consensus 203 ktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~atG------~ 267 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTTG------N 267 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECCC------C
Confidence 7899999996 5555544443 12357778999988888887775322 111 111 35799987522 2
Q ss_pred HHHHHH-HHHhcccCCeEEEEEeCC
Q 017377 297 EGIFLI-EADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 297 ~~~~L~-el~rvLkPGG~lvis~p~ 320 (372)
.. ++. +..+.+|+||.++.....
T Consensus 268 ~~-~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 268 KD-IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HH-HHHHHHHhcCCCCcEEEEeCCC
Confidence 22 444 458899999999888753
No 376
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.60 E-value=13 Score=36.48 Aligned_cols=92 Identities=21% Similarity=0.085 Sum_probs=57.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=+|+|. |.++..+++.. .. .++++|.++...+.+++.|....+... .... ....+.+|+|+-.-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~-~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGATATVNAG-DPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCCceEeCCC-chhHHHHHHHHhCCCCCEEEECCC-
Confidence 5677688753 55555566542 23 477889999999999887765433211 1110 011236899885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+....+.|++||.+++...
T Consensus 269 -----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 1256777889999999998654
No 377
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=77.45 E-value=16 Score=33.88 Aligned_cols=91 Identities=24% Similarity=0.153 Sum_probs=55.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=.|+|. |..+..+++. +.. .+++++.++...+.+++.|....+... ..-....+.+|+|+.... .
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~d~vl~~~~-----~ 169 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAAD--TADEIGGRGADVVIEASG-----S 169 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCcccccc--chhhhcCCCCCEEEEccC-----C
Confidence 6777778764 5555555554 322 277789899888888887721111111 111113456899885411 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|+++|.++....
T Consensus 170 --~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 170 --PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred --hHHHHHHHHHhcCCcEEEEEec
Confidence 1256778889999999987643
No 378
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.35 E-value=15 Score=35.07 Aligned_cols=88 Identities=25% Similarity=0.188 Sum_probs=54.9
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|+=+|.| -|+++..+.+.+. ...+++.|.+...++.+.+.|+........ .--.....|+|+.+ ..+ .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Viva---vPi-~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVA---VPI-E 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEe---ccH-H
Confidence 456667766 3677777777775 466899999999999998887654432110 01123557999875 222 2
Q ss_pred cHHHHHHHHHhcccCCeE
Q 017377 296 KEGIFLIEADRLLKPGGY 313 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~ 313 (372)
....+++++...|++|..
T Consensus 76 ~~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 76 ATEEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHHHhcccCCCCCE
Confidence 223466666666666543
No 379
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.95 E-value=17 Score=34.14 Aligned_cols=93 Identities=20% Similarity=0.162 Sum_probs=56.9
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCC-C-CCCCCccEEEecccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-P-YPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~l-p-~~~~sFDlV~~~~~~~~ 292 (372)
.+||=+|+| .|.++..+++. +. ..++.+|.++.-.+.+++.|....+..-+. ..+ . .....+|+|+-.-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G--- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG--- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC---
Confidence 678888875 34455555554 32 236677999998999988876433221100 000 0 12345898875421
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|+|+|.+++...
T Consensus 197 ---~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ---A-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ---C-hHHHHHHHHHhcCCCEEEEecc
Confidence 1 1267788899999999998764
No 380
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=75.83 E-value=25 Score=33.04 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee--ecceEEEEec
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ--QDETFIWQKT 363 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~--~~~~~iw~K~ 363 (372)
+....+|..++..|.|||++++.+.+. . .. -.++.+|.+..+-..-.. ...-+.|+|.
T Consensus 189 esT~~aLe~lyprl~~GGiIi~DDY~~-~-------gc---r~AvdeF~~~~gi~~~l~~id~~~v~w~k~ 248 (248)
T PF05711_consen 189 ESTKDALEFLYPRLSPGGIIIFDDYGH-P-------GC---RKAVDEFRAEHGITDPLHPIDWTGVYWRKE 248 (248)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEESSTTT-H-------HH---HHHHHHHHHHTT--S--EE-SSS-EEEE--
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCC-h-------HH---HHHHHHHHHHcCCCCccEEecCceEEEecC
Confidence 334568999999999999999998754 2 22 344566665555443333 2334568773
No 381
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=75.12 E-value=44 Score=34.66 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=62.4
Q ss_pred CeEEEeCCCCcHHHHHHHhc---CCceeEEEEeeCCHHHHHHHHHc----CCCe---EEEEeeccCC-CC-CCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSL---KLMAVCVAVYEATGSQVQLALER----GLPA---MIGNFISRQL-PY-PSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~---~~~~~~v~gvD~s~~~v~~A~~r----gl~~---~~~~~d~~~l-p~-~~~sFDlV~ 285 (372)
..|.|.-||+|.+....... +.....++|.+....+...+..+ +... .....+...- .+ ....||.|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 57999999999987654331 22235689999999998877754 3221 1112222111 12 235688888
Q ss_pred ecccc--------------------ccc----cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 286 CAQCG--------------------IIW----DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 286 ~~~~~--------------------~~~----~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
++--+ .|+ ......++..+..+|++||...+.-+.
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 75210 111 112235788889999999987777653
No 382
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.50 E-value=18 Score=35.60 Aligned_cols=96 Identities=27% Similarity=0.249 Sum_probs=63.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-----CCCCC-CCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-----LPYPS-LSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-----lp~~~-~sFDlV~~~~~~ 290 (372)
.+|+=+|||+ |.++..+++.. -...|+.+|.++.-++.|++.+-.....+..... ..... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3899999996 77776666652 2356788899999999999854322222111100 01122 36999985433
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...++.++.+++||||.+++.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1127889999999999999887653
No 383
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.32 E-value=2.2 Score=43.65 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc----CCC----eEEEEee--ccCCCCCCCCccEEEe
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER----GLP----AMIGNFI--SRQLPYPSLSFDMVHC 286 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r----gl~----~~~~~~d--~~~lp~~~~sFDlV~~ 286 (372)
+-+|||.=|++|.-+...+..-.....+++-|.++..|+..+++ ++. ....++. +...+-....||+|..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 36799999999998888887744567788999999999876654 221 1111111 2233445688999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
- .+. .+..+|....+.++.||.+.++...
T Consensus 190 D----PyG-s~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 190 D----PYG-SPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred C----CCC-CccHHHHHHHHHhhcCCEEEEEecc
Confidence 4 222 2234899999999999999998653
No 384
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.65 E-value=29 Score=33.70 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=56.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cCC----C--CCCCCcc----EE
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQL----P--YPSLSFD----MV 284 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~l----p--~~~~sFD----lV 284 (372)
.+||=+|+|. |..+..+++.. ...++++|.++..++.+++.|....+...+. ..+ . .....+| .|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 6899999864 55556666552 2357778999999999988776533221110 000 0 1112344 45
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 285 HCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
+-.-. . ...+....++|++||.+++....
T Consensus 246 ~d~~g------~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 246 FECSG------S-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EECCC------C-hHHHHHHHHHHhcCCeEEEECcC
Confidence 42211 1 12566778899999999987653
No 385
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=72.98 E-value=15 Score=35.06 Aligned_cols=85 Identities=22% Similarity=0.158 Sum_probs=53.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=+||| .|.++..+++. +.. .+..+|.++..++.|.+... .+.... ....||+|+-.-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G------ 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG------ 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC------
Confidence 567777876 46677777765 432 35567888887777754321 111111 2346899886522
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|++||.+++...
T Consensus 210 ~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 1256788899999999998764
No 386
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.54 E-value=24 Score=34.36 Aligned_cols=94 Identities=23% Similarity=0.197 Sum_probs=60.3
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee---ccCC--CCCCCCccEEEecccc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQL--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~l--p~~~~sFDlV~~~~~~ 290 (372)
.+||=.| .|.|+++..|++.-. ..+.++-.+++-.+.+++.|.+..+..-+ .... ......+|+|+..-.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG- 220 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG- 220 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC-
Confidence 7888887 567889999998732 13444556666666888888764443110 0011 122346999987522
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
...+.+....|++||.++......
T Consensus 221 -------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 221 -------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred -------HHHHHHHHHHhccCCEEEEEecCC
Confidence 235677889999999999876644
No 387
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=71.94 E-value=10 Score=29.98 Aligned_cols=75 Identities=21% Similarity=0.111 Sum_probs=46.0
Q ss_pred eCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHH
Q 017377 223 VGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302 (372)
Q Consensus 223 IGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~ 302 (372)
+-||.|..+..+++. +-+.+.++|+++.+...+.....-....+|+|++. +.....+.
T Consensus 4 ~~Cg~G~sTS~~~~k---------------i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pqv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVKK---------------MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hhHHHHHH
Confidence 458888877766542 34567778888776655554443234568999886 33344667
Q ss_pred HHHhcccCCeEEEEEeC
Q 017377 303 EADRLLKPGGYFVLTSP 319 (372)
Q Consensus 303 el~rvLkPGG~lvis~p 319 (372)
++.+...+.+.-+...+
T Consensus 62 ~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 62 EVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHhccCCCcEEEcC
Confidence 77765555444444333
No 388
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=71.76 E-value=3 Score=38.98 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=31.8
Q ss_pred CeEEEeCCCCcHHHHHHHhc--CC-----ceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSL--KL-----MAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~--~~-----~~~~v~gvD~s~~~v~~A~~r 260 (372)
-+|+|+|+|.|.++..+++. .. ...+++-+|+|+.+.+..+++
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 58999999999999988874 11 235788899999888766655
No 389
>PRK10742 putative methyltransferase; Provisional
Probab=71.74 E-value=14 Score=34.80 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL 256 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~ 256 (372)
+.+++.+.++.+ ...+|||.=+|.|..+..++..|. .|+++|-|+.....
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaal 125 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAAL 125 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHH
Confidence 467777777665 113899999999999999999875 38899999877543
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.64 E-value=6.4 Score=31.59 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHhcCC-ceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC----CCCCCccEEEeccccccccccHHH
Q 017377 225 CGFGSFGAHLVSLKL-MAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP----YPSLSFDMVHCAQCGIIWDKKEGI 299 (372)
Q Consensus 225 CG~G~~~~~L~~~~~-~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp----~~~~sFDlV~~~~~~~~~~~~~~~ 299 (372)
||.|.++..+++.-. ....++.+|.++..++.+.+.+..+..++. .+.. ..-...|.|++... .+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~--~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDA--TDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-T--TSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccc--hhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 667778877776411 124688899999999999999966655543 2211 12246788877532 122223
Q ss_pred HHHHHHhcccCCeEEEEEeC
Q 017377 300 FLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 300 ~L~el~rvLkPGG~lvis~p 319 (372)
.+....|-+-|...++....
T Consensus 78 ~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 78 LIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEEC
Confidence 55566677788888887755
No 391
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.87 E-value=46 Score=31.48 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=58.0
Q ss_pred CeEEEeC--CCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVG--CGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIG--CG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.| .|.|.++..+++.. ...+++++.++...+.+++.|....+.. ....+ ....+.+|+|+-.-.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEEECCC-
Confidence 6777776 45677777777662 2457778888888888888776433321 11110 112246898885422
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
...+.+..+.|+++|.++...
T Consensus 221 -------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 -------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -------HHHHHHHHHhhccCCEEEEEc
Confidence 135678899999999998764
No 392
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=70.85 E-value=63 Score=30.59 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=72.1
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEeccccccc--
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW-- 293 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~~~~-- 293 (372)
+++|+=||-|.+..-|...|+ -.+.++|+++..++.-+.+.. .....|...+. ++. .+|+++...--..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 689999999999999988874 447889999999887766543 44444555543 443 59999875110111
Q ss_pred ------cccHH-HH---HHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEee
Q 017377 294 ------DKKEG-IF---LIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQ 353 (372)
Q Consensus 294 ------~~~~~-~~---L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~ 353 (372)
..+.. .+ +.++.+.++|--.++=-+++.-. ......++.+....+++++.+...
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~------~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS------SKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT------GGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccccccccchhhHHHHHHHhhccceEEEecccceeec------cccccccccccccccccceeehhc
Confidence 12222 12 34455667886444433343222 022245666666668888776543
No 393
>PLN02740 Alcohol dehydrogenase-like
Probab=69.86 E-value=30 Score=34.16 Aligned_cols=93 Identities=19% Similarity=0.078 Sum_probs=56.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeecc-CC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISR-QL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~-~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |..+..+++.. .. .|+++|.++...+.+++.|....+..-+.. .+ ....+.+|+|+-.-.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 6788888752 44455555542 23 477889999999999887765433211000 00 011236999886422
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
.. ..+.+....+++| |.+++...
T Consensus 278 ------~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 ------NV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ------Ch-HHHHHHHHhhhcCCCEEEEEcc
Confidence 11 2667777889997 98887654
No 394
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.56 E-value=34 Score=32.78 Aligned_cols=92 Identities=25% Similarity=0.203 Sum_probs=57.1
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC----C--CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ----L--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~----l--p~~~~sFDlV~~~~~~ 290 (372)
.+||-.|+|. |..+..+++. ....++++..++...+.+++.+....+. ..... + ..+...+|+|+....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTIN-VGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 6788888763 6666667665 2244666777888888887766433221 11111 0 023456999986521
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++..+.
T Consensus 237 ----~--~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 ----N--PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ----C--HHHHHHHHHHHhcCCEEEEEcC
Confidence 1 1257888999999999986643
No 395
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.19 E-value=28 Score=34.15 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=51.2
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHH-HHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQ-VQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~-v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=.|+| .|.++..+++.- ...++.++.++.. .+.+++.|....+..-+...+.-..+.+|+|+-.-.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g------ 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS------ 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC------
Confidence 567778876 355666666552 2345556666544 345556665433211110011000124888885421
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|++||.++....
T Consensus 257 ~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 1267778899999999997754
No 396
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=68.16 E-value=53 Score=31.52 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=57.5
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-cCCCeEEEEeeccCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNFISRQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=.|+ |.|.++..+++.. ...+++++.++...+.+++ .|....+..-+.... ....+.+|+|+-.-.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 67887875 5677777777662 2346777888888888877 676433221000000 011246898875421
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
...+.+..+.|+++|.++...
T Consensus 231 --------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 --------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred --------HHHHHHHHHHhccCcEEEEec
Confidence 136778899999999999754
No 397
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=67.99 E-value=1.4 Score=29.41 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHH
Q 017377 30 VALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYL 71 (372)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 71 (372)
+|.++|+|++|.-.|-+-|.+...+. ++-+++...|+.+.+
T Consensus 7 ~a~~lgis~~ti~~~~~~g~i~~~~~-g~~~~~~~~~l~~~~ 47 (49)
T TIGR01764 7 AAEYLGVSKDTVYRLIHEGELPAYRV-GRHYRIPREDVDEYL 47 (49)
T ss_pred HHHHHCCCHHHHHHHHHcCCCCeEEe-CCeEEEeHHHHHHHH
Confidence 67889999999988888898887776 567789999988765
No 398
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.94 E-value=34 Score=32.74 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=54.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~~ 290 (372)
.+||-.|+| .|..+..+++.-.. ..++.++.++...+.+++.+....+. .....+ -.+.+.+|+|+-...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~g- 245 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAVG- 245 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEccC-
Confidence 677777765 35555666655211 24666788888777777666432221 110000 013357999885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. ...+.+..+.|+++|.++...
T Consensus 246 ----~--~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 ----F--EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ----C--HHHHHHHHHHhhcCCEEEEEc
Confidence 1 136788889999999998654
No 399
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=67.78 E-value=17 Score=34.20 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEec
Q 017377 230 FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCA 287 (372)
Q Consensus 230 ~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~ 287 (372)
++..|.+.+. ...|+++|.++..++.|.+.|+......- ...+ ..+|+|+.+
T Consensus 1 ~A~aL~~~g~-~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~----~~~Dlvvla 52 (258)
T PF02153_consen 1 IALALRKAGP-DVEVYGYDRDPETLEAALELGIIDEASTD-IEAV----EDADLVVLA 52 (258)
T ss_dssp HHHHHHHTTT-TSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHG----GCCSEEEE-
T ss_pred ChHHHHhCCC-CeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHh----cCCCEEEEc
Confidence 4566777763 36799999999999999988876544321 1111 335888764
No 400
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.62 E-value=16 Score=28.89 Aligned_cols=77 Identities=21% Similarity=0.122 Sum_probs=47.7
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
.+|| +-||.|..+..+++. +-+.+.++|+++.+...+..+++-....+|+|+.. +..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k---------------~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~-------pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK---------------MNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA-------PQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH---------------HHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC-------chH
Confidence 3566 679999776655532 34567888998777666554443333568999876 233
Q ss_pred HHHHHHHHhcccCCeEEEEE
Q 017377 298 GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis 317 (372)
...+.++...+.+-|.=+..
T Consensus 61 ~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHhhhcCCCEEE
Confidence 33566677766654444433
No 401
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=67.49 E-value=16 Score=39.22 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=26.1
Q ss_pred CCccEEEeccccccccccH----HHHHHHHHhcccCCeEEEEE
Q 017377 279 LSFDMVHCAQCGIIWDKKE----GIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 279 ~sFDlV~~~~~~~~~~~~~----~~~L~el~rvLkPGG~lvis 317 (372)
..||+|+.-. +-.- .++ ..+|.++.|+++|||.+.-.
T Consensus 165 ~~~d~~~lD~-FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 165 ARADAWFLDG-FAPA-KNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ccccEEEeCC-CCCc-cChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 5699998752 2221 222 35899999999999999843
No 402
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=67.34 E-value=14 Score=29.69 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=51.7
Q ss_pred eCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccHHHHHH
Q 017377 223 VGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKEGIFLI 302 (372)
Q Consensus 223 IGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~~~~L~ 302 (372)
+-||.|..+..+++ .+-+.++++|+++.+......+++-..+.+|+|+.. +...-.+.
T Consensus 5 l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQv~~~~~ 62 (99)
T cd05565 5 VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQMASYYD 62 (99)
T ss_pred EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------ChHHHHHH
Confidence 56888865555543 345678889999887766666665555678988765 44445788
Q ss_pred HHHhcccCCeEEEEEeC
Q 017377 303 EADRLLKPGGYFVLTSP 319 (372)
Q Consensus 303 el~rvLkPGG~lvis~p 319 (372)
++...+.+-|.-+...+
T Consensus 63 ~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 63 ELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHhhhcCCCEEEeC
Confidence 88888888777665544
No 403
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=66.66 E-value=18 Score=38.52 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=59.1
Q ss_pred eEEEeCCCCcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--CCCCCccEEEeccccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--YPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~~~~~ 295 (372)
.|+= ||.|.++..+++. .-....++.+|.+++.++.+++.|.++.+++....+.- -.-+..|++++... . +
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~--d--~ 475 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN--E--P 475 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC--C--H
Confidence 3444 4555666555542 11224578899999999999988888888865321110 12245788877521 1 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+....+-...|.+.|...++....+..+
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 2223455566678888888876655433
No 404
>PLN02827 Alcohol dehydrogenase-like
Probab=66.63 E-value=37 Score=33.51 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=55.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |.++..+++. |. ..++++|.++...+.|++.|....+..-+. ... ....+.+|+|+-.-.
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 6888888752 4444555554 32 246778989999999988886533221100 000 011236898885422
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. . ..+.+..+.|++| |.+++...
T Consensus 273 -----~-~-~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 273 -----D-T-GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred -----C-h-HHHHHHHHhhccCCCEEEEECC
Confidence 1 1 2567778889998 99987654
No 405
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=66.47 E-value=22 Score=33.15 Aligned_cols=83 Identities=27% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHH---H----HHHHc-CC------C
Q 017377 198 RQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQV---Q----LALER-GL------P 263 (372)
Q Consensus 198 ~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v---~----~A~~r-gl------~ 263 (372)
+.+++......+ ...+|||.=+|-|.-+..++..| ..|++++-|+-+. + .+.+. .. .
T Consensus 63 ~~l~kA~Glk~~------~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 63 DPLAKAVGLKPG------MRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp SHHHHHTT-BTT------B---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred cHHHHHhCCCCC------CCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 356666655554 22489999999999998888766 4699999998653 2 22221 11 1
Q ss_pred eEEEEeeccC-CCCCCCCccEEEeccc
Q 017377 264 AMIGNFISRQ-LPYPSLSFDMVHCAQC 289 (372)
Q Consensus 264 ~~~~~~d~~~-lp~~~~sFDlV~~~~~ 289 (372)
+.+...|..+ ++.++++||+|..--.
T Consensus 134 i~l~~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCCCHSS--SEEEE--S
T ss_pred CEEEcCCHHHHHhhcCCCCCEEEECCC
Confidence 3344444333 4566899999998644
No 406
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.88 E-value=58 Score=31.56 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=43.5
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCC-CCCccEEEec
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYP-SLSFDMVHCA 287 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~-~~sFDlV~~~ 287 (372)
|+|+-||.|.+..-+...|+. .+.++|+++..++.-+.+... .....|...+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 589999999999998887753 367899999998877665432 2222344443211 1248999864
No 407
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.81 E-value=24 Score=35.00 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=52.2
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHH-HHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQ-VQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~-v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=.|+| .|.++..+++.- ...++.++.+++. .+.+++.|....+..-+...+.-..+.+|+|+-.-.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G------ 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS------ 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC------
Confidence 677777875 355555566542 2346667766544 667766676433221110000000124788875421
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|++||.++....
T Consensus 252 ~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 A-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred c-HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 1256778889999999997764
No 408
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=64.72 E-value=2 Score=38.43 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=42.5
Q ss_pred HHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhhc
Q 017377 30 VALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLELR 74 (372)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 74 (372)
.|.++|+|++|+.=|-+-|.|......+|-.++.|.++.++..+.
T Consensus 7 ~~~~lgis~~Tl~rw~r~G~i~~~~~~~gr~~~~ee~v~~~~~~~ 51 (193)
T COG2452 7 ACQLLGISYSTLLRWIREGKIRVVTTEGGKYRIPEEEIKKYLGKR 51 (193)
T ss_pred HHHHhCcCHHHHHHHHHcCcccceEecCceEeccHhHHHHHhchh
Confidence 578999999999999999999999999999999999999998876
No 409
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.43 E-value=57 Score=31.36 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=55.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeE-EEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---------CCCCCCccEEEe
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVC-VAVYEATGSQVQLALERGLPAMIGNFISRQL---------PYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~-v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---------p~~~~sFDlV~~ 286 (372)
.+||=.|+|. |..+..+++.- ... ++.++.++...+.+++.+....+.. ..... ....+.||+|+-
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~vi~~-~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKELGATHTVNV-RTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCcEEecc-ccccchhHHHHHHHHhCCCCCCEEEE
Confidence 5676677654 55566666551 223 6667778888888776665433221 11110 123456999985
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... . ...+.+..+.|+++|.++....
T Consensus 241 ~~g-----~--~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 241 CTG-----A--ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCC-----C--HHHHHHHHHHhhcCCEEEEEcc
Confidence 422 1 1267788999999999987653
No 410
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=64.36 E-value=73 Score=30.67 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=68.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHH----HHHcCCC-eEEEEeeccCCCCCC---CCccEEEeccc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQL----ALERGLP-AMIGNFISRQLPYPS---LSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~----A~~rgl~-~~~~~~d~~~lp~~~---~sFDlV~~~~~ 289 (372)
+.|+=+| -.-.++.+++-.+. .-.|+.+|+++..+++ |.+.|++ +.....|. +-|+|+ +.||+.+.--.
T Consensus 154 K~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dl-r~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDL-RNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCccchhheeehh-cccChHHHHhhCCeeecCch
Confidence 5688888 44455555554443 3568889999999864 5566776 44444443 345553 68998876421
Q ss_pred cccccccHHHHHHHHHhcccCC---eEEEEEeCCCCCCCCCCcchhhHHHHHHHH-HHHhcC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG---GYFVLTSPESKPRGSSSSRKNKSLLKVMEE-FTEKIC 347 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG---G~lvis~p~~~~~~~~~~~e~~~~w~~i~~-l~~~lc 347 (372)
... +....++..=...||.- ||+.++... .....|..++. +...++
T Consensus 231 -eTi-~alk~FlgRGI~tLkg~~~aGyfgiT~re----------ssidkW~eiQr~lIn~~g 280 (354)
T COG1568 231 -ETI-KALKLFLGRGIATLKGEGCAGYFGITRRE----------SSIDKWREIQRILINEMG 280 (354)
T ss_pred -hhH-HHHHHHHhccHHHhcCCCccceEeeeecc----------ccHHHHHHHHHHHHHhcC
Confidence 111 22234555555567665 888888542 23455776666 444444
No 411
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=64.20 E-value=25 Score=32.46 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=31.3
Q ss_pred CCCeEEEeCCCCcHHHHHHHh-cCCceeEEEEeeCCHHHHHHHHHc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVS-LKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~-~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+-++-|-.||.|.+...+.- ++..-..|.+-|+++.+++.|.++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 557999999999987544432 222446789999999999988764
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.11 E-value=68 Score=30.30 Aligned_cols=86 Identities=26% Similarity=0.278 Sum_probs=53.5
Q ss_pred CeEEEeCCCCcHHHHHH---HhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 218 QSVLDVGCGFGSFGAHL---VSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L---~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.+||=.|+ |.++..+ ++. ....++.++.++...+.+++.|...... ... ....+.+|+|+-...
T Consensus 157 ~~vlV~g~--g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~-~~~~~~~d~vid~~g----- 223 (319)
T cd08242 157 DKVAVLGD--GKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRLGVETVLP---DEA-ESEGGGFDVVVEATG----- 223 (319)
T ss_pred CEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEeC---ccc-cccCCCCCEEEECCC-----
Confidence 56777775 4444444 433 2234677888899999998866543221 111 124467999986421
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEe
Q 017377 295 KKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. ...+....+.|+++|.+++..
T Consensus 224 ~--~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 S--PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred C--hHHHHHHHHHhhcCCEEEEEc
Confidence 1 125677788999999999743
No 413
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.55 E-value=23 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=32.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
.+.+|+|.|.|..-...+..+. ..-+|++.++-.+..++-+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred CcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHH
Confidence 6899999999998877777663 3357899999998776644
No 414
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=63.47 E-value=47 Score=32.59 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=56.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-ccC----C-CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-SRQ----L-PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-~~~----l-p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+|. |.++..+++. +. ..++++|.++...+.+++.|....+...+ ... + ....+.+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKA--SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 6788888763 5555666654 32 24778899999999998888754332111 000 0 011235888875421
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. ...+.+..+.+++| |.+++...
T Consensus 265 ------~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 265 ------N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ------C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 12567778899886 99887664
No 415
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=62.93 E-value=88 Score=29.61 Aligned_cols=88 Identities=24% Similarity=0.238 Sum_probs=52.5
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=.|||. |..+..+++. ....++.++.++...+.+++.|....+. .... +.+.+|+++.... .
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~--~~~~vD~vi~~~~------~ 235 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELARELGADWAGD---SDDL--PPEPLDAAIIFAP------V 235 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHHhCCcEEec---cCcc--CCCcccEEEEcCC------c
Confidence 4555566652 2333334443 1245677788888888887767532221 1111 3456898774311 1
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.++.+.|+++|.++....
T Consensus 236 -~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 236 -GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred -HHHHHHHHHHhhcCCEEEEEcC
Confidence 1368889999999999997653
No 416
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=62.90 E-value=49 Score=31.92 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=54.3
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cCC--CCCCCCcc-EEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQL--PYPSLSFD-MVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~l--p~~~~sFD-lV~~~~~~ 290 (372)
.+||=.|+|. |.++..+++. +. ..+++++.++.-.+.+++.|....+..-+. ..+ ......+| +|+-.-.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G- 238 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG- 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC-
Confidence 6777778753 4444555554 32 235678889998888887775432211100 000 01234577 5553211
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|++||.+++...
T Consensus 239 -----~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 239 -----V-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1367788899999999998764
No 417
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=62.22 E-value=54 Score=31.39 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=54.6
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cC-CC-CCCCCccEEEeccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQ-LP-YPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~-lp-~~~~sFDlV~~~~~~~ 291 (372)
.+||-.|+|. |..+..+++. |.. .++.++.++...+.+.+.+....+..-+. .. .. .+...+|+|+....
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~--~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g-- 236 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAK--RVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAG-- 236 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCC--
Confidence 6788888654 5555566654 321 26777888888887776665322211000 00 01 12345999986411
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. ...+..+.+.|+++|.++..+
T Consensus 237 ---~--~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 237 ---S--PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ---C--HHHHHHHHHHhhcCCEEEEEc
Confidence 1 236778899999999998765
No 418
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.51 E-value=54 Score=31.62 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=56.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----C-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p-~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|..+..+++. +. ..++++|.++...+.+++.|....+. .....+ . .....+|+|+....
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGA--GRIIAVGSRPNRVELAKEYGATDIVD-YKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCceEec-CCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 677777875 34555555654 32 24677899888888888877643322 111110 1 12346899985422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 245 ------~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 245 ------G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ------C-HHHHHHHHHHhhcCCEEEEecc
Confidence 1 1367888999999999986543
No 419
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.69 E-value=71 Score=31.19 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=56.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeecc-CC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISR-QL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~-~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+| .|.++..+++. ... .++++|.++...+.+++.|....+..-+.. .. ....+.+|+|+-.-.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 677777865 34455555554 123 477889999999999887765433211100 00 011236898886422
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. ...+.+..+.|+++ |.+++...
T Consensus 266 ------~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 266 ------N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ------C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 1 12677788899997 99887654
No 420
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=60.53 E-value=48 Score=31.74 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=49.9
Q ss_pred CeEEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+|.=||+|. +.++..+.+.+. ...++++|.++...+.+.+.+....... +... .-...|+|+..--. .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~~-~~~~---~~~~aDvViiavp~----~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVTT-SAAE---AVKGADLVILCVPV----G 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceecC-CHHH---HhcCCCEEEECCCH----H
Confidence 5688888885 345555555553 2368889999998888887765322110 1100 11346888765211 1
Q ss_pred cHHHHHHHHHhcccCCeEEE
Q 017377 296 KEGIFLIEADRLLKPGGYFV 315 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lv 315 (372)
....++.++...+++|..++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEE
Confidence 11235556666666666443
No 421
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=60.20 E-value=70 Score=32.16 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=64.4
Q ss_pred ccc-cchhHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc------
Q 017377 188 LVF-DGVKDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER------ 260 (372)
Q Consensus 188 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r------ 260 (372)
..| +........+.+.+..+++ ....|+|.|.|.....++..+.... -+|+++....-+.|...
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~--------D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk 241 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPA--------DVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKK 241 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCC--------CcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHH
Confidence 444 3333444455566666665 7789999999998777766532212 12333332222221110
Q ss_pred -----CCC---eEEEEeeccCC---CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCC
Q 017377 261 -----GLP---AMIGNFISRQL---PYPSLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESK 322 (372)
Q Consensus 261 -----gl~---~~~~~~d~~~l---p~~~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~ 322 (372)
|-. ......+...- ..-...-++|+++.+. +.++...=+.++..-+++|-.++=+.+...
T Consensus 242 ~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 242 LMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 221 11222211100 0112456888887653 334444446688888999988776655444
No 422
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=60.10 E-value=70 Score=31.20 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=55.0
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-c----CC-CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-R----QL-PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~----~l-p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+| .|.++..+++. +. ..++++|.++...+.+++.|....+...+. . .+ ....+.+|+|+-.-.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~--~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g 263 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGA--SRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCC
Confidence 677777875 24444555554 32 257788999999999987776433211100 0 00 011246899885321
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. ...+.+..+.|+++ |.+++...
T Consensus 264 -----~--~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 264 -----N--ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred -----C--hHHHHHHHHhcccCCCEEEEEcC
Confidence 1 12677788899886 99987654
No 423
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.45 E-value=72 Score=30.60 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=53.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|+|. |..+..+++.- .. .+..++-++.-.+.+.+.+....+.. ..... -.+.+.+|+|+....
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vd~vld~~g- 240 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKMGADVVINP-REEDVVEVKSVTDGTGVDVVLEMSG- 240 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCcceeeCc-ccccHHHHHHHcCCCCCCEEEECCC-
Confidence 5666677653 55555666542 22 35566777777777777675432211 11111 022356899986421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++..+.
T Consensus 241 ----~--~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 241 ----N--PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred ----C--HHHHHHHHHHhccCCEEEEEcc
Confidence 1 1256778899999999987654
No 424
>PTZ00357 methyltransferase; Provisional
Probab=59.14 E-value=45 Score=36.08 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=59.1
Q ss_pred eEEEeCCCCcHHHHHHHhc----CCceeEEEEeeCCHHHHHHHHHc-----CC---------CeEEEEeeccCCCCC---
Q 017377 219 SVLDVGCGFGSFGAHLVSL----KLMAVCVAVYEATGSQVQLALER-----GL---------PAMIGNFISRQLPYP--- 277 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~----~~~~~~v~gvD~s~~~v~~A~~r-----gl---------~~~~~~~d~~~lp~~--- 277 (372)
.|+=+|+|-|-+....++. +. ...|.+++-++..+.+.+.+ .- .+.+...|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999876554432 43 47799999995533222222 11 245666677766432
Q ss_pred --------CCCccEEEeccccccccccH--HHHHHHHHhcccC----CeE
Q 017377 278 --------SLSFDMVHCAQCGIIWDKKE--GIFLIEADRLLKP----GGY 313 (372)
Q Consensus 278 --------~~sFDlV~~~~~~~~~~~~~--~~~L~el~rvLkP----GG~ 313 (372)
-+.+|+|++. .+-.+.++. ...|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1379999996 334454443 2578888888887 776
No 425
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.57 E-value=13 Score=36.27 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=56.7
Q ss_pred EEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-cCCCeEEEEe-eccCCCCCCCCccEEEeccccccccccH
Q 017377 220 VLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNF-ISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-rgl~~~~~~~-d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|.-+| |-|+++..+++. ..+.|+++|-+..--+.|-+ .|.+..+... +.....--.++.|.++-. ...+ .
T Consensus 187 I~GlG-GLGh~aVq~AKA--MG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~--v~~~---a 258 (360)
T KOG0023|consen 187 IVGLG-GLGHMAVQYAKA--MGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT--VSNL---A 258 (360)
T ss_pred EecCc-ccchHHHHHHHH--hCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee--eeec---c
Confidence 33443 489999999987 45789999999766555554 4555443322 111111112345544321 0111 1
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
...+.-+.+.||++|.+++...+...
T Consensus 259 ~~~~~~~~~~lk~~Gt~V~vg~p~~~ 284 (360)
T KOG0023|consen 259 EHALEPLLGLLKVNGTLVLVGLPEKP 284 (360)
T ss_pred ccchHHHHHHhhcCCEEEEEeCcCCc
Confidence 12567788999999999998876654
No 426
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=57.45 E-value=26 Score=37.46 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=55.6
Q ss_pred CeEEEeCCCC-cHHHHH-HHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC--CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCGF-GSFGAH-LVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP--YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~-L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp--~~~~sFDlV~~~~~~~~~ 293 (372)
.+|+=+|||. |..... |.+++ ..++.+|.++..++.+++.|.++.+++..-.+.- -.-+..|++++...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~---- 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID---- 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC----
Confidence 4577677663 332222 33334 3478899999999999988888877755322110 12246788887521
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.++....+....|-+.|.-.++.....
T Consensus 474 d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 112223444556666777776665443
No 427
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=57.29 E-value=18 Score=30.42 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=22.9
Q ss_pred EeCCCCc--HHHHHHH-hcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 222 DVGCGFG--SFGAHLV-SLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 222 DIGCG~G--~~~~~L~-~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
|||++.| ....+++ +.......++++|+++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 2333456788999999987765444
No 428
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=56.57 E-value=99 Score=30.05 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=55.3
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccC----C-C-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQ----L-P-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~----l-p-~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|..+..+++.- .. .++.++.++...+.+++.+....+. ..... + . .+.+.+|+|+....
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~~~g~~~vv~-~~~~~~~~~l~~~~~~~~vd~vld~~~ 260 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIA--GASRIIAVDPVPEKLELARRFGATHTVN-ASEDDAVEAVRDLTDGRGADYAFEAVG 260 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHhCCeEEeC-CCCccHHHHHHHHcCCCCCCEEEEcCC
Confidence 577777775 455555666542 23 3677788888888877666532221 11000 0 0 12456998885421
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 261 -----~--~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 261 -----R--AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred -----C--hHHHHHHHHHhhcCCeEEEEec
Confidence 0 1367788999999999987654
No 429
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=56.28 E-value=29 Score=33.88 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 217 VQSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 217 ~~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+.+|.=||.|. |..++.++-- ....|+-+|.|..-++..... +..+...--+...+.-.-...|+|+.. +++.-.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga-VLIpga 244 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLIPGA 244 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEecCC
Confidence 34677788885 6777777654 346678889998776554332 222222211222222223578999987 556655
Q ss_pred ccHHHHHHHHHhcccCCeEEEE
Q 017377 295 KKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvi 316 (372)
..|..+.+++...+|||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 7777789999999999999883
No 430
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=56.09 E-value=96 Score=29.99 Aligned_cols=92 Identities=26% Similarity=0.307 Sum_probs=54.1
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---------CCCCCccEEEe
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQLP---------YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---------~~~~sFDlV~~ 286 (372)
.+||=.|+| .|..+..+++. ... .+++++.++...+.+++.|....+. ......+ ...+.+|+|+-
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~vid 255 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVVIE 255 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEEEE
Confidence 566667754 23344445544 123 5777888888888887767643221 1110000 12346899885
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... . ...+.+..+.|+++|.++....
T Consensus 256 ~~g-----~--~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 256 ASG-----H--PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCC-----C--hHHHHHHHHHhccCCEEEEEcC
Confidence 421 1 1256778899999999997654
No 431
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=55.98 E-value=67 Score=30.72 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=56.7
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHH-cCCCeEEEEeeccCC-----CCCCCCccEEEecc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALE-RGLPAMIGNFISRQL-----PYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~-rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~ 288 (372)
.+||=.|+ |.|.++..+++.. .. .+++++.+++..+.+++ .|....+.. ....+ ...++.+|+|+..-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~-~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINY-KTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHCCCCceEEEECC
Confidence 57877775 5777877777762 23 47778888888888765 676443221 11111 01125699998542
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. .. .+.+..+.|+++|.++...
T Consensus 233 g------~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G------GE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred C------cH--HHHHHHHHhccCCEEEEEe
Confidence 2 11 3467888999999999754
No 432
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.84 E-value=28 Score=36.50 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=53.5
Q ss_pred eEEEeCCCCcHHHHHHHhcC-CceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-CC-CCCCCccEEEeccccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLK-LMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-LP-YPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~-~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-lp-~~~~sFDlV~~~~~~~~~~~ 295 (372)
.++=+|| |.++..+++.- -....++.+|.+++.++.+++.+.++.+++....+ +. ..-+..|.+++.-. +
T Consensus 419 hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~-----~ 491 (558)
T PRK10669 419 HALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP-----N 491 (558)
T ss_pred CEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC-----C
Confidence 3454555 55555555430 01245788999999999999888887777553211 10 12246787765421 2
Q ss_pred cHH-HHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEG-IFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~-~~L~el~rvLkPGG~lvis~p 319 (372)
+.. ..+-...|...|...++....
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 222 223334466678877776643
No 433
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=55.38 E-value=92 Score=29.82 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=54.1
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||-.|+| .|..+..+++. |.. .++.++.++...+.+++.+....+.. ....+ ..+.+.||+|+-...
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~v~~-~~~~~~~~l~~~~~~~~~d~vld~~g 239 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASGAY--PVIVSDPNEYRLELAKKMGATYVVNP-FKEDVVKEVADLTDGEGVDVFLEMSG 239 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCcEEEcc-cccCHHHHHHHhcCCCCCCEEEECCC
Confidence 456556664 34455555554 321 25666888888888877776432211 11110 123456999986421
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.++.+.|+++|.++....
T Consensus 240 -----~--~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 -----A--PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred -----C--HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 1367788999999999987764
No 434
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.18 E-value=56 Score=27.16 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=47.1
Q ss_pred CeEEEeCCCCcH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|.|||-|.=. .+..|+++| ..++++|+.+. .|. .|+++..-+...-.+... ...|+|.+..+ +++
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY-~~A~lIYSiRp----ppE 82 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP-EGLRFVVDDITNPNISIY-EGADLIYSIRP----PPE 82 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cCc-ccceEEEccCCCccHHHh-hCccceeecCC----CHH
Confidence 479999988654 466777776 45788999886 332 344444332222222222 34688887654 344
Q ss_pred HHHHHHHHHhccc
Q 017377 297 EGIFLIEADRLLK 309 (372)
Q Consensus 297 ~~~~L~el~rvLk 309 (372)
....+.++.+.++
T Consensus 83 l~~~ildva~aVg 95 (129)
T COG1255 83 LQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHhhC
Confidence 4456666666554
No 435
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=53.94 E-value=1.3e+02 Score=27.71 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=54.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||-.|| +.|..+..++.. ....+..++.++...+.+++.+....+... .... -.+...+|+++....
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~~~d~v~~~~g 217 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARALGADHVIDYR-DPDLRERVKALTGGRGVDVVYDPVG 217 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHHcCCceeeecC-CccHHHHHHHHcCCCCcEEEEECcc
Confidence 68999998 345555555554 223477778888888888777654332211 1000 012346898886422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
. ..+..+.+.++++|.++...
T Consensus 218 -----~---~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 218 -----G---DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred -----H---HHHHHHHHhhccCCEEEEEc
Confidence 1 24556778899999988654
No 436
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.89 E-value=1.7e+02 Score=29.89 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHHHHHHHcc-CCCchhhhcCCCeEEEeC---CC----CcHHHHHHHhcCCceeEEEEeeCC-HHHHHHHH----HcCC
Q 017377 196 YSRQIAEMIGL-GTDSEFLQAGVQSVLDVG---CG----FGSFGAHLVSLKLMAVCVAVYEAT-GSQVQLAL----ERGL 262 (372)
Q Consensus 196 ~~~~l~~~l~~-~~~~~~~~~~~~~VLDIG---CG----~G~~~~~L~~~~~~~~~v~gvD~s-~~~v~~A~----~rgl 262 (372)
..+++.+.+.. ..........+..||=+| .| .|-++.+|.+++..+. +++.|.- +++++..+ +-++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVL-LVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceE-EEecccCChHHHHHHHHHHHHcCC
Confidence 35566666663 222222233456777774 45 2445566666665544 6778886 44454433 3354
Q ss_pred CeEEEEeeccCCC----------CCCCCccEEEec-cccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 263 PAMIGNFISRQLP----------YPSLSFDMVHCA-QCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 263 ~~~~~~~d~~~lp----------~~~~sFDlV~~~-~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
++.-. +...-| +..+.||+|+.- ...+|..++.-.-+.+++.+++|.=.+++.+.....
T Consensus 157 ~~f~~--~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 157 PFFGS--GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred ceecC--CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 44322 223333 235679999984 344555444445688899999999999999886654
No 437
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.24 E-value=81 Score=30.76 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=56.7
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|+|. |..+..+++. |. ..++++|.++...+.+++.+....+. .....+ ....+.+|+|+-.-.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~--~~v~~~~~~~~k~~~~~~~g~~~~i~-~~~~~~~~~v~~~~~~~~d~vld~~g- 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGC--TTIIAVDIVDSRLELAKELGATHVIN-PKEEDLVAAIREITGGGVDYALDTTG- 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCcEEec-CCCcCHHHHHHHHhCCCCcEEEECCC-
Confidence 6777777653 5555555554 32 14778899998888888777543221 110000 011346899885421
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+.++.+.|+++|.++.....
T Consensus 264 ----~--~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 264 ----V--PAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred ----C--cHHHHHHHHHhccCCEEEEeCcC
Confidence 1 12677889999999999987643
No 438
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=52.96 E-value=1.5e+02 Score=27.65 Aligned_cols=92 Identities=20% Similarity=0.172 Sum_probs=53.6
Q ss_pred CeEEEeCCC--CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc---CC--CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCG--FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR---QL--PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG--~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~---~l--p~~~~sFDlV~~~~~~ 290 (372)
.+||=+|.+ .|.....++... ...+..++.++...+.+.+.+....+...+.. .+ ....+.+|+++.+...
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~ 245 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGA 245 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcH
Confidence 678877765 455555555442 23466778888888777665543222111100 00 0123468999865331
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+.++.+.|+++|.++....
T Consensus 246 --------~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 246 --------ATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred --------HHHHHHHHHhhcCCEEEEEec
Confidence 245677788999999887653
No 439
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.13 E-value=2e+02 Score=26.69 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=49.9
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC---CCCCCCccEEEecccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL---PYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l---p~~~~sFDlV~~~~~~~~ 292 (372)
.+||-.|+ +.|..+..++... ...++.++.+ ...+.+++.+....+.. ..... ....+.+|+|+....
T Consensus 145 ~~vli~g~~g~~g~~~~~la~~~--g~~v~~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~--- 217 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIAKAL--GAHVTGVCST-RNAELVRSLGADEVIDY-TTEDFVALTAGGEKYDVIFDAVG--- 217 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCH-HHHHHHHHcCCCEeecC-CCCCcchhccCCCCCcEEEECCC---
Confidence 78999987 3566666666552 2345666644 66677776665332211 11111 123456999986422
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
.........+. .|+++|.++...
T Consensus 218 --~~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 218 --NSPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred --chHHHHHHhhh-ccCCCCEEEEec
Confidence 11111232333 399999999754
No 440
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.99 E-value=85 Score=30.03 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 216 GVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 216 ~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
......|+|+..|.++-.|.+++ +.|+++|..+.. +.....|. +...-.|.....-.....|-.+|..+ +
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma-~sL~dtg~-v~h~r~DGfk~~P~r~~idWmVCDmV-----E 280 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMA-QSLMDTGQ-VTHLREDGFKFRPTRSNIDWMVCDMV-----E 280 (358)
T ss_pred CCceeeecccCCCccchhhhhcc---eEEEEeccchhh-hhhhcccc-eeeeeccCcccccCCCCCceEEeehh-----c
Confidence 34789999999999999999886 568889976543 22222232 22222232222213467899998643 4
Q ss_pred cHHHHHHHHHhcccCC
Q 017377 296 KEGIFLIEADRLLKPG 311 (372)
Q Consensus 296 ~~~~~L~el~rvLkPG 311 (372)
.+..+-.-|..-|..|
T Consensus 281 kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 KPARVAALIAKWLVNG 296 (358)
T ss_pred CcHHHHHHHHHHHHcc
Confidence 4544444445555544
No 441
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=50.85 E-value=2.2e+02 Score=26.78 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=56.4
Q ss_pred CCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHH----HHcCC----CeEEEEeecc-CC-------CCCCCC
Q 017377 217 VQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLA----LERGL----PAMIGNFISR-QL-------PYPSLS 280 (372)
Q Consensus 217 ~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A----~~rgl----~~~~~~~d~~-~l-------p~~~~s 280 (372)
+..|+.+|||.=+-...+... ....+.-+|.-+ .++.- .+.+. ...+...|.. .+ .|..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC--CCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 367999999998777666422 224455556533 33221 11111 2233333332 11 133334
Q ss_pred ccEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 281 FDMVHCAQCGIIWDKK-EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 281 FDlV~~~~~~~~~~~~-~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
--++++.+++..+.++ ...+|..+.+...||+.+++....
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4466666665555433 346888888888899999987654
No 442
>PF12728 HTH_17: Helix-turn-helix domain
Probab=50.82 E-value=4.4 Score=27.74 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=34.2
Q ss_pred HHHHHHHhcccccccceeccCCCCccccchhhhhHHHhHHHHhh
Q 017377 30 VALIAVLGSSTSNTLDFVTSSSKPDIYSSYRRLKEQAAVDYLEL 73 (372)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 73 (372)
+|.++++|++|.-.|-+-|.+..-+ .++-.++..+|++++..=
T Consensus 7 ~a~~l~is~~tv~~~~~~g~i~~~~-~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 7 AAELLGISRSTVYRWIRQGKIPPFK-IGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHCcCHHHHHHHHHcCCCCeEE-eCCEEEEeHHHHHHHHHh
Confidence 6789999999987777888887665 445588999999988653
No 443
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=50.56 E-value=1.9e+02 Score=27.11 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=52.6
Q ss_pred eEEEeCCCC-cH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee----ccCCCCCCCCccEEEecccccc
Q 017377 219 SVLDVGCGF-GS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI----SRQLPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 219 ~VLDIGCG~-G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d----~~~lp~~~~sFDlV~~~~~~~~ 292 (372)
+|+=||+|. |. ++..|++.+ ..|+.++.++..++...+.++....+... ....+-+...+|+|+..-- .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k--~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVK--A 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecc--c
Confidence 466788874 33 455555554 34677788777777776666543100000 0000111257899987521 1
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+...++..+...+.++..++....
T Consensus 77 --~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 77 --YQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred --ccHHHHHHHHhhhcCCCCEEEEecC
Confidence 2345578888888887766665443
No 444
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.53 E-value=96 Score=30.20 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=55.1
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCC-----CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~l-----p~~~~sFDlV~~~~~ 289 (372)
.+||=+|+| .|.++..+++. ... .++++|.++...+.+++.|....+...+. ..+ ....+.+|+|+-.-.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 677777764 24444555554 123 57788999999999988776433321110 000 012236888875421
Q ss_pred cccccccHHHHHHHHHhcccCC-eEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPG-GYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPG-G~lvis~p 319 (372)
. ...+....+.+++| |.+++...
T Consensus 267 ------~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 267 ------N-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ------C-hHHHHHHHHHhhcCCCEEEEECc
Confidence 1 22567778889996 99987654
No 445
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=50.51 E-value=1.1e+02 Score=29.66 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=53.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|..+..+++. +. ..++.++.++...+.+++.+....+. ...... ..++..||+|+..-.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G~--~~vi~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~~d~vld~vg 265 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFGA--SPIIAVDVRDEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVDVVVEALG 265 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCceEec-CCcccHHHHHHHHhCCCCCCEEEEeCC
Confidence 556655654 44455555554 32 22667788888888887766533222 111110 113456999986421
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. . ..+.++.+.|+++|.++....
T Consensus 266 -----~-~-~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 266 -----K-P-ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred -----C-H-HHHHHHHHHHhcCCEEEEEcc
Confidence 1 1 256778899999999987653
No 446
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.96 E-value=48 Score=26.76 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=49.0
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCC--CCCCccEEEecccccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPY--PSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~--~~~sFDlV~~~~~~~~~~~~ 296 (372)
+|| +-||.|..+..+++. +-+.++++|+++.+...+...++- ....||+|++. ++
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~-------PQ 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS-------PQ 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC-------hH
Confidence 355 669999877766543 234677889887766554444432 23468999876 33
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.++...+.+-|.-+...+
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeC
Confidence 44467778888876555444433
No 447
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=49.80 E-value=6.8 Score=39.53 Aligned_cols=63 Identities=8% Similarity=-0.042 Sum_probs=48.1
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHhcccccccceeccCCC-CccccchhhhhHHHhHHHHhhcc
Q 017377 12 ILGRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSYRRLKEQAAVDYLELRT 75 (372)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~ 75 (372)
+|.|.++..+ =.|...=+|.++|++.+|+=||++-|.... .+..+|.|.|+..|+.+++.+-.
T Consensus 37 ~~~p~~~k~~-r~ft~~e~A~~lgvs~~tlr~~~~~g~~~~~~~~~~grR~yt~~di~~lr~~l~ 100 (405)
T PRK13869 37 LFPPTSHKSL-RKFTSGEAARLMKISDSTLRKMTLAGEGPQPELASNGRRFYTLGQINEIRQMLA 100 (405)
T ss_pred cCCCCCCCCC-CCCCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCceeecHHHHHHHHHHHH
Confidence 3455544332 245666789999999999999997777654 57789999999999999998663
No 448
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=49.73 E-value=1.3e+02 Score=28.69 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=52.3
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+||=.||| .|..+..+++. ....+..++.++...+.+.+.+....+...+.....-..+.+|+|+.... ..
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g-----~~ 243 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVS-----AS 243 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCC-----Cc
Confidence 444446763 34444444444 12357778888888888877664433211110000011356898885422 11
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
..+.++.+.|+++|.++....
T Consensus 244 --~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 --HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred --chHHHHHHHhcCCCEEEEEec
Confidence 146778899999999997654
No 449
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.50 E-value=1.6e+02 Score=27.38 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=56.1
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=.|+ +.|..+..+++.. ...+..++.++...+.+++.|....+.. ..+ +.++.+|+++-...
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~--~~~~~~d~vl~~~g------ 201 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALA--GAHVVAVVGSPARAEGLRELGAAEVVVG--GSE--LSGAPVDLVVDSVG------ 201 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEEec--ccc--ccCCCceEEEECCC------
Confidence 67777777 4555655566542 2446777888888888887776522221 111 22356899885421
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+.+..+.|+++|.++....
T Consensus 202 ~--~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 202 G--PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred c--HHHHHHHHHhcCCCEEEEEec
Confidence 1 256788999999999997653
No 450
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.41 E-value=2.1e+02 Score=26.45 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=57.2
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|+ +.|..+..+++.. ...++.+..++...+.+.+.|....+.. ...+ .+ .+.+|+|+....
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~-~~~~d~vl~~~~- 217 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKELGADEVVID--DGAIAEQLRAA-PGGFDKVLELVG- 217 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCcEEEec--CccHHHHHHHh-CCCceEEEECCC-
Confidence 67777775 4666777777652 2446777888888888877776433321 1110 12 456999985422
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ..+.+..+.|+++|.++....
T Consensus 218 -----~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 218 -----T--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred -----h--HHHHHHHHHhccCCEEEEEcc
Confidence 1 257788899999999987653
No 451
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.34 E-value=1.2e+02 Score=30.13 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=54.7
Q ss_pred CeEEEeC-CC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHc--------CCCeEEEEeec-cCC-----C-CCCC
Q 017377 218 QSVLDVG-CG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALER--------GLPAMIGNFIS-RQL-----P-YPSL 279 (372)
Q Consensus 218 ~~VLDIG-CG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~r--------gl~~~~~~~d~-~~l-----p-~~~~ 279 (372)
.+||=+| +| .|.++..+++. +.-...++++|.++..++.+++. |......+... ..+ . ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 5777776 34 67777777765 22123578899999999999875 32212221100 011 0 1234
Q ss_pred CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 280 SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 280 sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
.||+|+..-. . ...+.+..+.++++|.+++.
T Consensus 257 g~D~vid~~g------~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFVP------V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcCC------C-HHHHHHHHHHhccCCeEEEE
Confidence 6898876421 1 23677888999988866543
No 452
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=48.98 E-value=29 Score=33.38 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEE
Q 017377 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLI 351 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~ 351 (372)
.+-||+|+.+....|... .++.++++|||.+++.....-- ..........-+.+.++++..+|+-.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaKfmv--dLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAKFMV--DLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcchhhe--eCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 477999998765555422 2478899999999998752211 11112333445667888888888643
No 453
>PLN02494 adenosylhomocysteinase
Probab=48.71 E-value=72 Score=32.95 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=53.9
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
++|+=+|+|. |...+..+.. ..+.|+.+|.++.....|...|..+. . ..+. -...|+|++...-.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka--~Ga~VIV~e~dp~r~~eA~~~G~~vv--~--leEa---l~~ADVVI~tTGt~~---- 321 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKA--AGARVIVTEIDPICALQALMEGYQVL--T--LEDV---VSEADIFVTTTGNKD---- 321 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhhHHHHhcCCeec--c--HHHH---HhhCCEEEECCCCcc----
Confidence 7899999984 4333333332 23468888888866556665555421 1 1111 134799987533222
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
.+..+....+|+||+++.....
T Consensus 322 --vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 322 --IIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred --chHHHHHhcCCCCCEEEEcCCC
Confidence 2447788899999999988763
No 454
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=48.62 E-value=30 Score=34.46 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=50.6
Q ss_pred CCeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-CCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 217 VQSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-GLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 217 ~~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-gl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+.+|+=||+| .|..++..+.. ....|+.+|.++...+.+... +..+.....+...+.-.-..+|+|+..-. ..-.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g~ 243 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPGA 243 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCCC
Confidence 3568888988 45555555544 123578899988776665443 22211110011111101146899997521 1111
Q ss_pred ccHHHHHHHHHhcccCCeEEEE
Q 017377 295 KKEGIFLIEADRLLKPGGYFVL 316 (372)
Q Consensus 295 ~~~~~~L~el~rvLkPGG~lvi 316 (372)
..+..+-.++.+.++||+.++-
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEE
Confidence 1122233566677899988774
No 455
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=48.19 E-value=1.1e+02 Score=28.83 Aligned_cols=83 Identities=27% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 220 VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|.=||+|. |+++..|.+.+ ..|.++|.++..++.+.+.+...... .... .-...|+|+..-- . ...
T Consensus 3 I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~g~~~~~~----~~~~-~~~~aDlVilavp---~-~~~ 70 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIERGLVDEAS----TDLS-LLKDCDLVILALP---I-GLL 70 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCccccc----CCHh-HhcCCCEEEEcCC---H-HHH
Confidence 45578774 55666666665 35888999999998888776421110 0111 1245788886521 1 122
Q ss_pred HHHHHHHHhcccCCeEE
Q 017377 298 GIFLIEADRLLKPGGYF 314 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~l 314 (372)
..++.++...++|+-.+
T Consensus 71 ~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 71 LPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHhCCCCcEE
Confidence 34677777777776443
No 456
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=47.66 E-value=1.6e+02 Score=28.33 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=54.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCcee-EEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----C-CCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAV-CVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~-~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p-~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|.++..+++. ... .++.++.++...+.+++.|....+... ..++ . ...+.+|+|+-...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~-~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEELGATIVLDPT-EVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCCEEECCC-ccCHHHHHHHHhCCCCCCEEEECCC
Confidence 566666753 34444555554 223 567778888888888776754332211 1110 0 12345899985422
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+.++.+.|++||.++.....
T Consensus 251 ------~-~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 251 ------V-QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred ------C-HHHHHHHHHhccCCCEEEEEccC
Confidence 0 12567888999999999876543
No 457
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=47.22 E-value=27 Score=34.48 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=63.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-----------cCCCe---EEEEeeccCCCC-CCCCcc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALE-----------RGLPA---MIGNFISRQLPY-PSLSFD 282 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-----------rgl~~---~~~~~d~~~lp~-~~~sFD 282 (372)
..|+|-=-|||++....+.-| .-+.|.|++-.++...+. -|... .+..+|...-|+ ....||
T Consensus 210 divyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 789999999999877766554 447889999888763211 12111 122234344443 346899
Q ss_pred EEEecc------------------------ccccccc-c-------HHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 283 MVHCAQ------------------------CGIIWDK-K-------EGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 283 lV~~~~------------------------~~~~~~~-~-------~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.|+|-- -.-|.+. . ....|.=..++|.-||.+++--|....
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~~e 359 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTITE 359 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCchhh
Confidence 999950 0011110 0 113456678999999999998885444
No 458
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=46.58 E-value=39 Score=33.05 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHccCCCchhhhcCCCeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 194 KDYSRQIAEMIGLGTDSEFLQAGVQSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 194 ~~~~~~l~~~l~~~~~~~~~~~~~~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
..|++.+.+.+..... ......+.+|||.|+--.-..+-.+. ....+.++|+.+..+..|.++
T Consensus 83 ~nYihwI~DLLss~q~---~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~sn 145 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQS---DKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSN 145 (419)
T ss_pred hhhHHHHHHHhhcccC---CCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhcc
Confidence 4677777777765432 11123457999988765443333222 225678899999999888765
No 459
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=46.24 E-value=97 Score=30.18 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=49.3
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHH-HcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLAL-ERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~-~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
.+||=+|+| .|.++..+++.. ...++.++.++...+.+. +.|....+...+...+.-....+|+|+-.-.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g------ 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP------ 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC------
Confidence 567766664 355555566552 233555666666555543 3455322211110001000124788875321
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|++||.++....
T Consensus 254 ~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 V-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred c-hHHHHHHHHHhccCCEEEEECC
Confidence 1 1266778889999999998764
No 460
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=45.87 E-value=66 Score=32.77 Aligned_cols=88 Identities=17% Similarity=0.067 Sum_probs=53.0
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
++|+=+|+|. |...+..+.. ..+.|+.+|.++.....+...|..+ . +.... -..+|+|+..-. .
T Consensus 213 k~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~~G~~v--~--~l~ea---l~~aDVVI~aTG------~ 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAAMDGFRV--M--TMEEA---AELGDIFVTATG------N 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHHhcCCEe--c--CHHHH---HhCCCEEEECCC------C
Confidence 7899999985 3333333332 2245788898887665555545432 1 11111 135899987522 2
Q ss_pred HHHHHH-HHHhcccCCeEEEEEeCCC
Q 017377 297 EGIFLI-EADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 297 ~~~~L~-el~rvLkPGG~lvis~p~~ 321 (372)
.. ++. +....+|+|++++......
T Consensus 278 ~~-vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 278 KD-VITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred HH-HHHHHHHhcCCCCCEEEEcCCCC
Confidence 22 454 6889999999999887654
No 461
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.64 E-value=38 Score=30.26 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=34.1
Q ss_pred CCCCCccEEEecccccccc-----------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWD-----------KKEGIFLIEADRLLKPGGYFVLTSPES 321 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~-----------~~~~~~L~el~rvLkPGG~lvis~p~~ 321 (372)
..++..|+||.|.|+..+. .+.+.++..++.+|+|+-.+++.+..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 4567789999998877553 123467778888999999999876544
No 462
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=45.25 E-value=21 Score=37.89 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=27.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATG 251 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~ 251 (372)
..|||+||.+|.+.....+.-+...-|+|+|+-+
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 7899999999999888777654556688999854
No 463
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=45.13 E-value=35 Score=34.17 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCCCCccEEEeccccccccccH--HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 276 YPSLSFDMVHCAQCGIIWDKKE--GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 276 ~~~~sFDlV~~~~~~~~~~~~~--~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++++||.++.+.. ..|.++. ...+.++.+.++|||.+++-......
T Consensus 291 ~~~~s~~~~vL~D~-~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 291 LPPGSFDRFVLSDH-MDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCCCCeeEEEecch-hhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 46899999998865 5554333 46789999999999999998765443
No 464
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=44.92 E-value=41 Score=31.82 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=26.0
Q ss_pred CeEEEeCCCCcHHHHHHHhcCC----ceeEEEEeeCCH
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKL----MAVCVAVYEATG 251 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~----~~~~v~gvD~s~ 251 (372)
..++|+|||.|.++.+++..-. ....+..+|-..
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 6899999999999999987531 234567788754
No 465
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=44.80 E-value=1.3e+02 Score=30.52 Aligned_cols=87 Identities=18% Similarity=0.050 Sum_probs=53.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
++|+=+|+|. |...+..++. ..+.|+.+|.++.....|...|..+ .. ..+. . ...|+|++.-. .
T Consensus 196 k~VvViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp~r~~~A~~~G~~v--~~--leea-l--~~aDVVItaTG------~ 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARG--MGARVIVTEVDPIRALEAAMDGFRV--MT--MEEA-A--KIGDIFITATG------N 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhh--CcCEEEEEeCChhhHHHHHhcCCEe--CC--HHHH-H--hcCCEEEECCC------C
Confidence 7899999996 4444444443 2356778888886655666555422 11 1111 1 34699887522 2
Q ss_pred HHHHHH-HHHhcccCCeEEEEEeCC
Q 017377 297 EGIFLI-EADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 297 ~~~~L~-el~rvLkPGG~lvis~p~ 320 (372)
. .++. +....+|+|++++.....
T Consensus 261 ~-~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 261 K-DVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred H-HHHHHHHHhcCCCCcEEEEECCC
Confidence 2 2444 588899999999988764
No 466
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=44.66 E-value=1.3e+02 Score=30.18 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=52.6
Q ss_pred eEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHH---HHHHHHHcCCCeE-EEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGS---QVQLALERGLPAM-IGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~---~v~~A~~rgl~~~-~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
.||=|+=..|.++..++..++. .+ .|.--. ..+-+..++++.. +...+. ..++| +.+|+|+.- ++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~~-----~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLIK-----VP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEEE-----eC
Confidence 5899999999999999876543 22 232111 1122334466533 121221 22334 448988753 33
Q ss_pred c---cHHHHHHHHHhcccCCeEEEEEeC
Q 017377 295 K---KEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 295 ~---~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. .....|..+.++|.||+.++...-
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 2 233578889999999999765443
No 467
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=44.42 E-value=1.6e+02 Score=28.05 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=55.8
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC------CCCCCCccEEEeccc
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL------PYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l------p~~~~sFDlV~~~~~ 289 (372)
.+||=.|+|. |..+..+++. +. ..++.++.++...+.+.+.|....+. .....+ -...+.+|+|+....
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGA--RHVVITDVNEYRLELARKMGATRAVN-VAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHHHhcCCCCCCEEEECCC
Confidence 5666677653 4555555554 32 13556688888888888877643321 111110 012456899886322
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
. ...+..+.+.|+++|.++.....
T Consensus 242 -----~--~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 242 -----A--PSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred -----C--HHHHHHHHHHHhcCCEEEEEecC
Confidence 1 23677788999999999988654
No 468
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.92 E-value=51 Score=27.56 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=52.5
Q ss_pred EEeCCCC-cH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEE------ee-ccCC-CCCCCCccEEEecccc
Q 017377 221 LDVGCGF-GS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGN------FI-SRQL-PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 221 LDIGCG~-G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~------~d-~~~l-p~~~~sFDlV~~~~~~ 290 (372)
+=+|+|. |. ++..|.+.+ ..|+.++-++ .++..++.++.+.... .. .... +...+.||+|+..-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g---~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-- 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAG---HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-- 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTT---CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--
T ss_pred EEECcCHHHHHHHHHHHHCC---CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe--
Confidence 3456663 44 344444444 4467778777 6666666665432111 10 0111 12457899999751
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
-. .+...++..+.+.+.|+..+++.-..
T Consensus 76 Ka--~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 76 KA--YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp SG--GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred cc--cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 12 23345899999999999888776544
No 469
>PRK10458 DNA cytosine methylase; Provisional
Probab=43.68 E-value=2.9e+02 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER 260 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r 260 (372)
-+++|+=||.|.+..-+-..|+. .+.++|+++.+.+.-+.+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHH
Confidence 58999999999999998877763 467899999888766554
No 470
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=43.04 E-value=2.8e+02 Score=26.37 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEeccccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW 293 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~~~~ 293 (372)
.+||=.|+| .|..+..+++. ....++.++.++...+.+++.|....+. .....+. .....+|+|+....
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~d~vi~~~g---- 237 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAK--MGFRTVAISRGSDKADLARKLGAHHYID-TSKEDVAEALQELGGAKLILATAP---- 237 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHcCCcEEec-CCCccHHHHHHhcCCCCEEEECCC----
Confidence 677777853 23444444444 1234677888888888888777643221 1111100 00134788885311
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 294 DKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 294 ~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|+++|.++....
T Consensus 238 --~-~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 --N-AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred --c-hHHHHHHHHHcccCCEEEEEec
Confidence 1 2367788999999999997654
No 471
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=42.78 E-value=19 Score=32.89 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCccccccchhccCCCchhHHHHHHHHHHHHHHHHhcc
Q 017377 2 RSPWFNKLSVILGRGPPLSWLLLCFLSIVALIAVLGSS 39 (372)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (372)
|-|--.|+++|+++-.+.+.+++|+...+..+.+++.|
T Consensus 191 rCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt 228 (275)
T KOG4684|consen 191 RCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILT 228 (275)
T ss_pred cCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45667899999998888899998888888888888776
No 472
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=42.36 E-value=1.6e+02 Score=27.65 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=56.0
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec--cC-CCCCCCCccEEEecccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS--RQ-LPYPSLSFDMVHCAQCGII 292 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~--~~-lp~~~~sFDlV~~~~~~~~ 292 (372)
.+||=+|+ +.|..+..+++.- ...++.++.++...+.+++.|....+..-+. .. ..+....+|+|+....
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g--- 222 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG--- 222 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc---
Confidence 57777776 3455555566542 2346777888888888887776433211110 00 0122356888875421
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 293 WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 293 ~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
...+.+..+.|+++|.++....
T Consensus 223 -----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 223 -----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----HHHHHHHHHHhhcCCEEEEEee
Confidence 1256788899999999998764
No 473
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=42.10 E-value=86 Score=30.52 Aligned_cols=123 Identities=14% Similarity=0.068 Sum_probs=69.1
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC---CCCCCccEEEeccccccc-
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP---YPSLSFDMVHCAQCGIIW- 293 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp---~~~~sFDlV~~~~~~~~~- 293 (372)
.+++|+=||-|.+..-+...|+. .+.++|+++..++.-+.+.....+...|..... +....+|+++...--..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 57999999999999888887753 367799999999877665442222222333222 111278999875211111
Q ss_pred -------cccHH----HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCee
Q 017377 294 -------DKKEG----IFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWS 349 (372)
Q Consensus 294 -------~~~~~----~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~ 349 (372)
.+|+. .-+.++...++| -.|++. ....-.. .....|+.+..-.+++++.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E-NV~gl~~-----~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE-NVKGLLS-----SKGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe-cCchHHh-----cCchHHHHHHHHHHHcCCc
Confidence 12322 234566667788 333333 2221110 0223566655555666665
No 474
>PRK10083 putative oxidoreductase; Provisional
Probab=41.95 E-value=2.1e+02 Score=27.19 Aligned_cols=93 Identities=24% Similarity=0.241 Sum_probs=53.4
Q ss_pred CeEEEeCCC-CcHHHHHHHhc--CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee---ccCCCCCCCCccEEEeccccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL--KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI---SRQLPYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~--~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d---~~~lp~~~~sFDlV~~~~~~~ 291 (372)
.+||=+|+| .|..+..+++. |. ..++++|.++...+.+++.|....+..-+ ...+.-....+|+|+....
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g-- 237 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNV--KAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC-- 237 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC--
Confidence 577778854 23344444542 43 23667888898888888877643322110 0011101123457664321
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+.+..+.|+++|.++....
T Consensus 238 ----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1267888899999999998654
No 475
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=41.74 E-value=30 Score=33.61 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=29.8
Q ss_pred CccEEEeccccccc----cccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 280 SFDMVHCAQCGIIW----DKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 280 sFDlV~~~~~~~~~----~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
+.|+|...+.+... ......+|..+..+++||-+|+|++.+-.+
T Consensus 200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 45666554332222 122346899999999999999999876665
No 476
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.35 E-value=2.2e+02 Score=27.09 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=51.6
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC---C-CCCCCCccEEEeccccc
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ---L-PYPSLSFDMVHCAQCGI 291 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~---l-p~~~~sFDlV~~~~~~~ 291 (372)
.+||=.|+ +.|..+..+++.. ...+++++.+. ..+.+++.+... +...+... . ......+|+|+....
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~~~-~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~~g-- 252 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRR--GAIVIAVAGAA-KEEAVRALGADT-VILRDAPLLADAKALGGEPVDVVADVVG-- 252 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCch-hhHHHHhcCCeE-EEeCCCccHHHHHhhCCCCCcEEEecCC--
Confidence 67888887 3455555566542 23355556554 667777666642 21111000 0 113456999986422
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 017377 292 IWDKKEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 292 ~~~~~~~~~L~el~rvLkPGG~lvis~ 318 (372)
...+.++.+.|+++|.++...
T Consensus 253 ------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 ------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ------HHHHHHHHHHhccCCEEEEec
Confidence 125678889999999998654
No 477
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=41.16 E-value=2.4e+02 Score=26.48 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=49.6
Q ss_pred eEEEeCCCC-cH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-------ccCCCCCCCCccEEEeccc
Q 017377 219 SVLDVGCGF-GS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-------SRQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 219 ~VLDIGCG~-G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-------~~~lp~~~~sFDlV~~~~~ 289 (372)
+|+=||+|. |. ++..|++.+. .|+.++. +..++..++.++.......+ ..+..-....+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~---~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR---DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC---ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 466678875 33 5555666553 4666777 66677666666543211100 0011111256898876521
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEE
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLT 317 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis 317 (372)
. .....++.++...+.++..++..
T Consensus 78 --~--~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 78 --A--YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred --c--cCHHHHHHHHHhhcCCCCEEEEe
Confidence 1 23345788888888887655544
No 478
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.12 E-value=55 Score=25.69 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.0
Q ss_pred eCCCCcHHHHHHH
Q 017377 223 VGCGFGSFGAHLV 235 (372)
Q Consensus 223 IGCG~G~~~~~L~ 235 (372)
+-||+|.-+..++
T Consensus 7 vvCgsG~~TS~m~ 19 (94)
T PRK10310 7 VACGGAVATSTMA 19 (94)
T ss_pred EECCCchhHHHHH
Confidence 4588888666664
No 479
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.84 E-value=1.1e+02 Score=26.21 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=46.0
Q ss_pred eEEEeCCCCcHHHHHH----HhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccc
Q 017377 219 SVLDVGCGFGSFGAHL----VSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWD 294 (372)
Q Consensus 219 ~VLDIGCG~G~~~~~L----~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~ 294 (372)
+|-=||+| ..+..+ ++.+ ..++.+|.+++..+...+.+ +... .+..++ -...|+|++. ....
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~g--~~~~-~s~~e~---~~~~dvvi~~---v~~~ 68 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAG---YEVTVYDRSPEKAEALAEAG--AEVA-DSPAEA---AEQADVVILC---VPDD 68 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTT---TEEEEEESSHHHHHHHHHTT--EEEE-SSHHHH---HHHBSEEEE----SSSH
T ss_pred EEEEEchH--HHHHHHHHHHHhcC---CeEEeeccchhhhhhhHHhh--hhhh-hhhhhH---hhcccceEee---cccc
Confidence 34446665 444444 4445 45778899999888887776 2221 111111 1235888875 1222
Q ss_pred ccHHHHHHH--HHhcccCCeEEEEEe
Q 017377 295 KKEGIFLIE--ADRLLKPGGYFVLTS 318 (372)
Q Consensus 295 ~~~~~~L~e--l~rvLkPGG~lvis~ 318 (372)
+....++.+ +...|++|..++-..
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred hhhhhhhhhhHHhhccccceEEEecC
Confidence 333456777 788888887766543
No 480
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=40.33 E-value=1.2e+02 Score=29.12 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCeEEEeCCCCc-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccc
Q 017377 217 VQSVLDVGCGFG-SFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDK 295 (372)
Q Consensus 217 ~~~VLDIGCG~G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~ 295 (372)
..+|+=||.|.- ......+.. ....++.+|.++...+.+.+.|... ... ..++-.-..+|+|+..- +
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~~~~~~~~~~G~~~--~~~--~~l~~~l~~aDiVI~t~---p--- 219 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKSAHLARITEMGLSP--FHL--SELAEEVGKIDIIFNTI---P--- 219 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCee--ecH--HHHHHHhCCCCEEEECC---C---
Confidence 378999999853 222222322 1246788899988777777665432 111 11111124689999752 1
Q ss_pred cHHHHHHHHHhcccCCeEEEEEe
Q 017377 296 KEGIFLIEADRLLKPGGYFVLTS 318 (372)
Q Consensus 296 ~~~~~L~el~rvLkPGG~lvis~ 318 (372)
...+-+++...++||+.++-..
T Consensus 220 -~~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 220 -ALVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred -hhhhhHHHHHcCCCCcEEEEEc
Confidence 1123456677889998877443
No 481
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=40.05 E-value=1.7e+02 Score=28.03 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=53.7
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC-------CCCCCccEEEecc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP-------YPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp-------~~~~sFDlV~~~~ 288 (372)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+.+.|....+. ..... ...+.+|+|+...
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGP--ANIIVVDIDEAKLEAAKAAGADVVVN---GSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCcEEec---CCCccHHHHHHHHhCCCCcEEEECC
Confidence 677777764 24444445544 32 14666788888888887777642221 11111 1122688888642
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. . ...+.+..+.|+++|.++....
T Consensus 252 g------~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 252 N------N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred C------C-HHHHHHHHHHhhcCCeEEEECC
Confidence 1 1 1267888999999999986543
No 482
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=39.58 E-value=64 Score=30.35 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCeEEEEEeCCCCCCCCCCcchhhHHHHHHHHHHHhcCeeEEeeecceEEEEecCC
Q 017377 299 IFLIEADRLLKPGGYFVLTSPESKPRGSSSSRKNKSLLKVMEEFTEKICWSLIAQQDETFIWQKTVD 365 (372)
Q Consensus 299 ~~L~el~rvLkPGG~lvis~p~~~~~~~~~~~e~~~~w~~i~~l~~~lcw~~~~~~~~~~iw~K~~~ 365 (372)
..+.++.|+|+++|.+++..+.... ..+....+..+|... ...+|.|+..
T Consensus 80 ~~~~~~~rvl~~~~~~~v~~~~~~~-------------~~~~~~~~~~gf~~~----~~iiw~k~~~ 129 (302)
T COG0863 80 QWLAEQKRVLKPGGSLYVIDPFSNL-------------ARIEDIAKKLGFEIL----GKIIWKKPSP 129 (302)
T ss_pred HHHHHhhheecCCCEEEEECCchhh-------------hHHHHHHHhCCCeEe----eeEEEeCCCC
No 483
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=39.32 E-value=56 Score=33.68 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=66.5
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHc-C------CCeEEEEe-----eccCCCCCCCCccEEE
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALER-G------LPAMIGNF-----ISRQLPYPSLSFDMVH 285 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~r-g------l~~~~~~~-----d~~~lp~~~~sFDlV~ 285 (372)
..+|=||-|.|.+...+... .....++++++.+.+++.|.+. + ..+.+.++ ......-.+..||++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~-~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMS-LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred CcEEEEecCCCccccceeee-cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 46788888889988887655 3447799999999999877654 1 11222111 0011111466799887
Q ss_pred ec---ccccccccc-H----HHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 286 CA---QCGIIWDKK-E----GIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 286 ~~---~~~~~~~~~-~----~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.- --.+.+... + ..+|..++.+|.|-|.++|.....+.
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 52 112222222 1 24788899999999999998776555
No 484
>PRK08507 prephenate dehydrogenase; Validated
Probab=39.01 E-value=1.6e+02 Score=27.60 Aligned_cols=83 Identities=24% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 220 VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|.=||+|. |.++..|.+.+. ...++++|.++..++.+.+.|...... +.... . + .|+|+..- .. ...
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~--~~~~~--~-~-aD~Vilav---p~-~~~ 71 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIV--SFEEL--K-K-CDVIFLAI---PV-DAI 71 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccC--CHHHH--h-c-CCEEEEeC---cH-HHH
Confidence 45567765 455666665554 346888999999888887766531111 11111 1 2 68888651 11 222
Q ss_pred HHHHHHHHhcccCCeEE
Q 017377 298 GIFLIEADRLLKPGGYF 314 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~l 314 (372)
..++.++.. +++|..+
T Consensus 72 ~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 72 IEILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHhc-cCCCCEE
Confidence 346667766 7666533
No 485
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=38.82 E-value=2.8e+02 Score=27.17 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=54.4
Q ss_pred CeEEEeCC--CCcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeecc------------------C-CC-
Q 017377 218 QSVLDVGC--GFGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISR------------------Q-LP- 275 (372)
Q Consensus 218 ~~VLDIGC--G~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~------------------~-lp- 275 (372)
.+||=.|+ +.|..+..+++. ....++.++.++...+.+++.|....+-.-... . ..
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF 272 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence 67888886 355555666655 223455678888888999887754322110000 0 00
Q ss_pred -------CCCC-CccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 276 -------YPSL-SFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 276 -------~~~~-sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.+.. .+|+|+.... . ..+.+..+.++++|.++....
T Consensus 273 ~~~v~~l~~~~~g~d~vid~~g------~--~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 273 GKAIWDILGGREDPDIVFEHPG------R--ATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred HHHHHHHhCCCCCCeEEEECCc------h--HhHHHHHHHhccCCEEEEEcc
Confidence 0122 5888875421 1 246777899999999998653
No 486
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=37.80 E-value=52 Score=27.67 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=42.4
Q ss_pred CeEEEeCCCCcH-HHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEecccccccccc
Q 017377 218 QSVLDVGCGFGS-FGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKK 296 (372)
Q Consensus 218 ~~VLDIGCG~G~-~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~ 296 (372)
.+|.|||-|.=. .+..|.+.| ..++++|+.+. .|. .|+++..-+.-.-++..- ...|+|.+.+. +.+
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY-~~a~lIYSiRP----P~E 82 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIY-EGADLIYSIRP----PPE 82 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------STTEE---SSS--HHHH-TTEEEEEEES------TT
T ss_pred CcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc-cCcceeeecccCCCHHHh-cCCcEEEEeCC----ChH
Confidence 589999999765 455555655 56888999987 333 577666553322111111 35788888754 233
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 017377 297 EGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 297 ~~~~L~el~rvLkPGG~lvis~p 319 (372)
....+.++.+-+ |.-++|...
T Consensus 83 l~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-B
T ss_pred HhHHHHHHHHHh--CCCEEEECC
Confidence 334555555544 455666544
No 487
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.14 E-value=2.1e+02 Score=27.27 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=53.8
Q ss_pred CeEEEeCCC-CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec-cCC-----CCCCCCccEEEecccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS-RQL-----PYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~-~~l-----p~~~~sFDlV~~~~~~ 290 (372)
.+||=.|+| .|..+..+++. ....++.++.++...+.+.+.|+...+. ... ..+ .+..+.+|+|+....
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~d~vi~~~g- 242 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASA--LGARVIAVDIDDDKLELARELGAVATVN-ASEVEDVAAAVRDLTGGGAHVSVDALG- 242 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHhCCCEEEc-cccchhHHHHHHHHhCCCCCEEEEcCC-
Confidence 567777753 34444455554 2345777888888888887767632221 111 111 011226999886521
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 IIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
. ...+....+.|+++|.++....
T Consensus 243 -----~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 243 -----I-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEeCC
Confidence 1 1256778899999999887543
No 488
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=35.89 E-value=2.5e+02 Score=26.72 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=49.4
Q ss_pred EEEeCCCC--cHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCCCCCCCccEEEeccccccccccH
Q 017377 220 VLDVGCGF--GSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLPYPSLSFDMVHCAQCGIIWDKKE 297 (372)
Q Consensus 220 VLDIGCG~--G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp~~~~sFDlV~~~~~~~~~~~~~ 297 (372)
|-=||+|. +.++..|++.+ ..|.++|.+++.++.+.+.+.... .+..++.-....-|+|++. ... ...
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~~~~~~~~dvIi~~---vp~-~~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKEDRTTGV---ANLRELSQRLSAPRVVWVM---VPH-GIV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCccc---CCHHHHHhhcCCCCEEEEE---cCc-hHH
Confidence 45577764 23455555555 346778999998887776653221 1111111011235888765 121 133
Q ss_pred HHHHHHHHhcccCCeEEEEEeCC
Q 017377 298 GIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 298 ~~~L~el~rvLkPGG~lvis~p~ 320 (372)
..++.++...|++|- +++...+
T Consensus 73 ~~v~~~l~~~l~~g~-ivid~st 94 (298)
T TIGR00872 73 DAVLEELAPTLEKGD-IVIDGGN 94 (298)
T ss_pred HHHHHHHHhhCCCCC-EEEECCC
Confidence 457788888888874 4454433
No 489
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=35.71 E-value=2.3e+02 Score=27.79 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=53.9
Q ss_pred CeEEEeCCCC-cHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec---------cCCCCCCCCccEEEe
Q 017377 218 QSVLDVGCGF-GSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS---------RQLPYPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG~-G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~---------~~lp~~~~sFDlV~~ 286 (372)
.+||=.|+|. |..+..+++. |. ..++.++.++...+.+++.|++..+..-+. .++ .+...+|+|+.
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G~--~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvld 281 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAGA--SKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGADIQVE 281 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCCEEEE
Confidence 5565557642 2333334443 32 246778888887788888777543321100 011 22356999886
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... .....+.++.+.|+++|.++..+.
T Consensus 282 ~~g------~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 282 AAG------APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCC------CcHHHHHHHHHHHHcCCEEEEECC
Confidence 422 122367788899999999997653
No 490
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=35.36 E-value=61 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCC
Q 017377 278 SLSFDMVHCAQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSPESKP 323 (372)
Q Consensus 278 ~~sFDlV~~~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~~~~ 323 (372)
.++||+++.. +...+. + .+|..+...++-||.+++-.|+...
T Consensus 9 G~e~~~~i~d-~~~g~~--p-nal~a~~gtv~gGGllill~p~~~~ 50 (92)
T PF08351_consen 9 GQEFDLLIFD-AFEGFD--P-NALAALAGTVRGGGLLILLLPPWES 50 (92)
T ss_dssp T--BSSEEEE--SS-----H-HHHHHHHTTB-TT-EEEEEES-GGG
T ss_pred CCccCEEEEE-ccCCCC--H-HHHHHHhcceecCeEEEEEcCCHHH
Confidence 4678999876 223332 2 3788899999999999999987543
No 491
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=34.53 E-value=3.3e+02 Score=27.01 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=57.7
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCCC------CCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQLP------YPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~lp------~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|..+..+++. +.. .++..|.++.-.+.|++.|... +.......++ .....+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~--~vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAA--VVIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 455557775 34455555554 432 2445688888899999888742 2110000100 12346899985432
Q ss_pred ccc-------ccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 290 GII-------WDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 290 ~~~-------~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
... ...+....+.+..+++++||.+++....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 110 1112224788899999999999997653
No 492
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=34.48 E-value=1.5e+02 Score=28.08 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=48.9
Q ss_pred CcHHHHHHHhcCCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccCC-----C-CCCCCccEEEeccccccccccHHHH
Q 017377 227 FGSFGAHLVSLKLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQL-----P-YPSLSFDMVHCAQCGIIWDKKEGIF 300 (372)
Q Consensus 227 ~G~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~l-----p-~~~~sFDlV~~~~~~~~~~~~~~~~ 300 (372)
.|.++..+++. ....+++++.++...+.+++.|....+.. ....+ . .+...+|+|+-.-. . ..
T Consensus 156 vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~i~~-~~~~~~~~v~~~~~~~~~d~vid~~g-----~---~~ 224 (324)
T cd08291 156 LGRMLVRLCKA--DGIKVINIVRRKEQVDLLKKIGAEYVLNS-SDPDFLEDLKELIAKLNATIFFDAVG-----G---GL 224 (324)
T ss_pred HHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCcEEEEC-CCccHHHHHHHHhCCCCCcEEEECCC-----c---HH
Confidence 45566666655 22347778889988888888776543321 11111 0 12346898885422 1 12
Q ss_pred HHHHHhcccCCeEEEEEeC
Q 017377 301 LIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 301 L~el~rvLkPGG~lvis~p 319 (372)
+.+..+.|++||.++....
T Consensus 225 ~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 225 TGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred HHHHHHhhCCCCEEEEEEe
Confidence 3456778899999988653
No 493
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=34.22 E-value=3e+02 Score=26.15 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=51.5
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeec------cCCCCCCCCccEEEeccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFIS------RQLPYPSLSFDMVHCAQC 289 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~------~~lp~~~~sFDlV~~~~~ 289 (372)
.+||=.|+| .|..+..+++. +. ..++.++.++...+.+++.|.+..+..... ..+ .+...+|+|+..-
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~- 243 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSP--SKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV- 243 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEECC-
Confidence 455546653 22333334443 31 345668888888888777675432221100 001 1234699998542
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 290 GIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 290 ~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. ...+..+.+.|+++|.++....
T Consensus 244 -----g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 244 -----GI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred -----CC-HHHHHHHHHhccCCcEEEEecc
Confidence 11 1257788899999999987653
No 494
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=34.15 E-value=67 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.2
Q ss_pred CeEEEeCCCCcHHHHHHHhcCCceeEEEEee
Q 017377 218 QSVLDVGCGFGSFGAHLVSLKLMAVCVAVYE 248 (372)
Q Consensus 218 ~~VLDIGCG~G~~~~~L~~~~~~~~~v~gvD 248 (372)
.-|.+||.|.|..+..+++.+.....++-.|
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D 82 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKD 82 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence 5699999999999999998876544444333
No 495
>PLN02702 L-idonate 5-dehydrogenase
Probab=33.99 E-value=3.4e+02 Score=26.18 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEee-ccC-------CC-CCCCCccEEEe
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFI-SRQ-------LP-YPSLSFDMVHC 286 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d-~~~-------lp-~~~~sFDlV~~ 286 (372)
.+||=+|+| .|..+..+++. +. ..++.+|.++...+.+++.|.+..+.... ... +. ...+.+|+|+-
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid 260 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFGA--PRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD 260 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence 567777764 34455555554 32 23667888888888888777654432110 001 10 12346898886
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 287 AQCGIIWDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 287 ~~~~~~~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
... . ...+.+..+.|+++|.++....
T Consensus 261 ~~g------~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 261 CVG------F-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CCC------C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 421 1 1267888999999999887654
No 496
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=32.72 E-value=4e+02 Score=25.44 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=54.6
Q ss_pred CeEEEeCCCC-c-HHHHHHHhcCCceeEEEEeeCCHHHHHHHHH-cCCCeEEEEeecc------CCCCCCCCccEEEecc
Q 017377 218 QSVLDVGCGF-G-SFGAHLVSLKLMAVCVAVYEATGSQVQLALE-RGLPAMIGNFISR------QLPYPSLSFDMVHCAQ 288 (372)
Q Consensus 218 ~~VLDIGCG~-G-~~~~~L~~~~~~~~~v~gvD~s~~~v~~A~~-rgl~~~~~~~d~~------~lp~~~~sFDlV~~~~ 288 (372)
.+|+=+|+|. | .++.+|.+.|. .|+.++-+++.++..++ .|+... ...... ..+-+.+.||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEEEC
Confidence 4688899884 4 46677766653 46667777666665554 354321 011000 0111235799998651
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 017377 289 CGIIWDKKEGIFLIEADRLLKPGGYFVLTSPE 320 (372)
Q Consensus 289 ~~~~~~~~~~~~L~el~rvLkPGG~lvis~p~ 320 (372)
=.+ +...++..+...+.++..++..-..
T Consensus 79 --K~~--~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 79 --KAY--DAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred --CHH--hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 111 2345788888889888876655443
No 497
>PRK14756 hypothetical protein; Provisional
Probab=32.44 E-value=47 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHhcccc
Q 017377 18 PLSWLLLCFLSIVALIAVLGSSTS 41 (372)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (372)
-+|.-+.-..+.|++|++.|.|.-
T Consensus 4 dLK~SL~tTvvaL~~Iva~~~ta~ 27 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVGLTAA 27 (29)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHh
Confidence 356677778889999999887754
No 498
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=32.37 E-value=2.6e+02 Score=27.30 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=56.2
Q ss_pred CeEEEeCCC-CcHHHHHHHhc-CCceeEEEEeeCCHHHHHHHHHcCCCeEEEEeeccC-----CCCCCCCccEEEecccc
Q 017377 218 QSVLDVGCG-FGSFGAHLVSL-KLMAVCVAVYEATGSQVQLALERGLPAMIGNFISRQ-----LPYPSLSFDMVHCAQCG 290 (372)
Q Consensus 218 ~~VLDIGCG-~G~~~~~L~~~-~~~~~~v~gvD~s~~~v~~A~~rgl~~~~~~~d~~~-----lp~~~~sFDlV~~~~~~ 290 (372)
.+||=.|+| .|..+..+++. |. ..++++|.++...+.+++.|.. ..+..... ..+..+.+|+|+-....
T Consensus 178 ~~vlI~g~g~vg~~~~~~a~~~G~--~~vi~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 253 (375)
T cd08282 178 DTVAVFGAGPVGLMAAYSAILRGA--SRVYVVDHVPERLDLAESIGAI--PIDFSDGDPVEQILGLEPGGVDRAVDCVGY 253 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCe--EeccCcccHHHHHHHhhCCCCCEEEECCCC
Confidence 566667775 34555555544 32 2466689999888888877752 11111111 01122468998864221
Q ss_pred cc----ccccHHHHHHHHHhcccCCeEEEEEeC
Q 017377 291 II----WDKKEGIFLIEADRLLKPGGYFVLTSP 319 (372)
Q Consensus 291 ~~----~~~~~~~~L~el~rvLkPGG~lvis~p 319 (372)
.. +..+....+.+..++|+++|.+++...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 254 EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred cccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 11 111233468889999999999976654
No 499
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=31.00 E-value=19 Score=28.68 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.4
Q ss_pred EEEeCCCCcHHHHHHHh
Q 017377 220 VLDVGCGFGSFGAHLVS 236 (372)
Q Consensus 220 VLDIGCG~G~~~~~L~~ 236 (372)
-+|||||.|........
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 47999999986554443
No 500
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=30.88 E-value=23 Score=35.47 Aligned_cols=60 Identities=5% Similarity=-0.158 Sum_probs=44.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhcccccccceeccCCC-Cccccch---h-hhhHHHhHHHHhhc
Q 017377 14 GRGPPLSWLLLCFLSIVALIAVLGSSTSNTLDFVTSSSK-PDIYSSY---R-RLKEQAAVDYLELR 74 (372)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y---~-~~~~~~~~~~~~~~ 74 (372)
.|..+..+ -.+-..=+|.++|++..|+=|||+.|++.. .|..+|+ | .|+=.++..++.+.
T Consensus 30 ~p~~~k~~-r~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei~~lr~~~ 94 (388)
T PRK13705 30 SPEARKIT-RRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVF 94 (388)
T ss_pred CCcccccc-CCCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHHHHHHHhh
Confidence 45444332 244556689999999999999999999987 4678887 4 58877887777665
Done!