BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017379
(372 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
Length = 503
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 56/375 (14%)
Query: 22 AVCLDGSPPAYHFDKGFGAGINNWLVHIDGGAWCNNVEDCSKRRDSSYGSSKHMVKEANF 81
C DGSP Y+ + G+ WL+ ++GG +C N E+C DS Y + + ++ ++
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENC----DSRYSTMRRLMSSKDW 159
Query: 82 ------TGILSNEQKFNPDFYDWNRVRVRYCDGASFTGDVEAVNPETNLHFRGARVFEAV 135
TGILS++ + NP +++ N V + YC ++G + + F G+ + + V
Sbjct: 160 PHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEV 218
Query: 136 MEDLLAKGMKNAQNAILTGCSAGGLTSILHCDNFRALFPV----DTRVKCFADAGYFVNA 191
+ +LL KG+ A+ +L G SAGG +L+ D L +V+ AD+G+F++
Sbjct: 219 VRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDN 278
Query: 192 KDVSGESHIEEFY-KQVVALHGSAKH----LPASCTSRLSPGL---CFFPENVAGQIKTP 243
K I+ A+ ++ +P C + G CFF V ++ P
Sbjct: 279 KQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCP 338
Query: 244 LFIINSAYDSWQIS--NILVPEDADPKGAWSSCKVDIKTCSSTQLQTMQGFRVQFLNALA 301
+F++ +D Q++ N+ + +G W + I+ T++ + F A
Sbjct: 339 VFVVQWLFDEAQLTVDNVHLTGQPVQEGQW----LYIQNLGRELRGTLKDVQASFAPACL 394
Query: 302 GLGNSSSRGMFVDSCYTHCRTDYQET------WFSA--DSPVLDKTPIAKAVGDWYYDRS 353
S + + S +T + W + DS KTP+
Sbjct: 395 ------SHEIIIRSYWTDVQVKGTSLPRALHCWDRSFHDSHKASKTPMKGC--------- 439
Query: 354 PFQKID-CPYP-CNP 366
PF +D CP+P CNP
Sbjct: 440 PFHLVDSCPWPHCNP 454
>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
Length = 496
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 23/252 (9%)
Query: 23 VCLDGSPPAYHFDKGFGAGINNWLVHIDGGAWCNNVEDCSKRRDS--SYGSSKHMVKEAN 80
C DGSP Y+ + G+ WL+ ++GG +C N E+C R D+ SS+ +
Sbjct: 100 TCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRT 157
Query: 81 FTGILSNEQKFNPDFYDWNRVRVRYCDGASFTGDVEAVNPETNLHFRGARVFEAVMEDLL 140
TGILS++ + NP +++ N V + YC ++G + + + F GA + + V+ +LL
Sbjct: 158 GTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELL 216
Query: 141 AKGMKNAQNAILTGCSAGGLTSILHCD----NFRALFPVDTRVKCFADAGYFVNAK---- 192
+G+ A+ +L G SAGG +L+ D L +V+ AD+G+F++ K
Sbjct: 217 GRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRH 276
Query: 193 ----DVSGESHIEEFYKQVVALHGSAKHLPASCTSRLSPGL---CFFPENVAGQIKTPLF 245
D + E + + +G +P C + G CFF V ++ P+F
Sbjct: 277 TDCVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVF 333
Query: 246 IINSAYDSWQIS 257
++ +D Q++
Sbjct: 334 VVQWLFDEAQLT 345
>sp|P26492|FLAV_DESDE Flavodoxin OS=Desulfovibrio desulfuricans PE=1 SV=1
Length = 148
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 138 DLLAKGMKNAQNAILTGCSAGGLTSILHCDNFRALFPVDTRVKCFADAGYFVNAKDVSGE 197
D A+ + + +A+L GCSA G+ + D+F +LF R+ AG V A SG+
Sbjct: 40 DASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFNRIGL---AGRKVAAF-ASGD 95
Query: 198 SHIEEFYKQVVALHGSAKHLPASCTSR 224
E F V A+ AK L A+ +
Sbjct: 96 QEYEHFCGAVPAIEERAKELGATIIAE 122
>sp|A9AMA4|ACCD_BURM1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=accD PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 110 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 155
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
>sp|B4EFK3|ACCD_BURCJ Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=accD PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 110 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 155
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
>sp|Q1BM67|ACCD_BURCA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Burkholderia cenocepacia (strain AU 1054) GN=accD
PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 110 SFTGDVEAVNPETNLHFRGARVFEAVMEDLLAKGMKNAQNAILTGC 155
+F GDV P+ + F G RV E + + L +G + A+ + TG
Sbjct: 215 AFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGA 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,511,477
Number of Sequences: 539616
Number of extensions: 6261419
Number of successful extensions: 11108
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11095
Number of HSP's gapped (non-prelim): 8
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)