Your job contains 1 sequence.
>017380
MAMASATPTRLPLISKHTSFYLTNCLPQTRFSHCTAIRPATNRFKCSAGGQTGFFTRLGR
LIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRIT
IKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNG
GGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS
VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGT
TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQP
FDAEAFVNAIFS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017380
(372 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 667 1.5e-65 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 639 1.4e-62 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 634 4.8e-62 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 589 2.8e-57 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 587 4.6e-57 1
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 584 9.6e-57 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 573 1.4e-55 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 570 2.9e-55 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 544 1.7e-52 1
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 543 2.1e-52 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 538 7.2e-52 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 521 4.6e-50 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 516 1.5e-49 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 492 5.4e-47 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 457 2.8e-43 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 454 5.7e-43 1
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 429 2.6e-40 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 409 3.4e-38 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 375 4.0e-37 2
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 396 8.0e-37 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 394 1.3e-36 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 393 1.7e-36 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 392 2.1e-36 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 388 5.7e-36 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 382 2.4e-35 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 382 2.4e-35 1
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 378 6.5e-35 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 374 1.7e-34 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 364 2.0e-33 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 358 8.5e-33 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 357 1.3e-32 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 353 2.9e-32 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 351 6.6e-32 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 343 7.6e-31 1
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 340 8.9e-31 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 339 1.1e-30 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 339 1.2e-30 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 339 1.2e-30 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 339 1.2e-30 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 339 1.2e-30 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 339 1.2e-30 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 339 1.2e-30 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 339 1.2e-30 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 341 1.7e-30 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 334 4.6e-30 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 332 4.9e-30 1
ASPGD|ASPL0000006202 - symbol:AN6627 species:162425 "Emer... 326 1.2e-28 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 320 1.2e-28 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 319 2.2e-28 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 321 2.3e-28 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 316 2.4e-28 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 318 4.0e-28 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 315 6.7e-28 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 315 6.7e-28 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 309 5.5e-27 1
TAIR|locus:2118701 - symbol:AT4G30600 species:3702 "Arabi... 308 1.1e-26 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 302 1.9e-26 1
POMBASE|SPBC3B9.03 - symbol:SPBC3B9.03 "signal recognitio... 295 1.8e-25 1
DICTYBASE|DDB_G0277377 - symbol:srpR "signal recognition ... 288 1.5e-24 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 284 2.0e-24 1
WB|WBGene00009521 - symbol:F38A1.8 species:6239 "Caenorha... 285 3.3e-24 1
CGD|CAL0003010 - symbol:orf19.3952 species:5476 "Candida ... 280 7.3e-24 1
SGD|S000002700 - symbol:SRP101 "Signal recognition partic... 183 3.9e-22 2
UNIPROTKB|F1NXV4 - symbol:SRPR "Uncharacterized protein" ... 239 1.6e-17 1
ZFIN|ZDB-GENE-030219-11 - symbol:srpr "signal recognition... 236 2.4e-17 2
UNIPROTKB|F1MNJ2 - symbol:SRPR "Signal recognition partic... 233 7.1e-17 1
UNIPROTKB|Q3MHE8 - symbol:SRPR "Signal recognition partic... 233 8.2e-17 1
UNIPROTKB|F1S754 - symbol:SRPR "Uncharacterized protein" ... 231 1.4e-16 1
UNIPROTKB|J9NTJ9 - symbol:SRPR "Signal recognition partic... 230 1.8e-16 1
UNIPROTKB|F1PLH3 - symbol:SRPR "Signal recognition partic... 230 1.8e-16 1
MGI|MGI:1914648 - symbol:Srpr "signal recognition particl... 229 2.4e-16 1
RGD|1311504 - symbol:Srpr "signal recognition particle re... 229 2.4e-16 1
UNIPROTKB|P08240 - symbol:SRPR "Signal recognition partic... 229 2.4e-16 1
UNIPROTKB|J9P788 - symbol:SRPR "Signal recognition partic... 230 2.6e-16 1
UNIPROTKB|P06625 - symbol:SRPR "Signal recognition partic... 222 1.6e-15 1
UNIPROTKB|Q485K6 - symbol:flhF "Flagellar biosynthetic pr... 205 9.2e-14 1
TIGR_CMR|CPS_1517 - symbol:CPS_1517 "flagellar biosynthet... 205 9.2e-14 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 200 4.8e-13 1
UNIPROTKB|Q8ECD1 - symbol:flhF "Flagellar polar localizat... 189 4.8e-12 1
TIGR_CMR|SO_3212 - symbol:SO_3212 "flagellar biosynthetic... 189 4.8e-12 1
UNIPROTKB|Q9KQD2 - symbol:VC_2068 "Flagellar biosynthetic... 186 1.2e-11 1
TIGR_CMR|VC_2068 - symbol:VC_2068 "flagellar biosynthetic... 186 1.2e-11 1
TIGR_CMR|CHY_1010 - symbol:CHY_1010 "flagellar biosynthes... 179 3.3e-11 1
UNIPROTKB|Q3V8C7 - symbol:flhF "Flagellar biogenesis prot... 176 1.4e-10 1
TIGR_CMR|GSU_3055 - symbol:GSU_3055 "flagellar biosynthet... 176 1.4e-10 1
UNIPROTKB|Q722L6 - symbol:LMOf2365_0717 "Putative flagell... 164 2.5e-09 1
UNIPROTKB|Q81SE2 - symbol:BA_1718 "Putative flagellar bio... 154 1.1e-08 1
TIGR_CMR|BA_1718 - symbol:BA_1718 "flagellar biosynthetic... 154 1.1e-08 1
TIGR_CMR|CJE_0061 - symbol:CJE_0061 "flagellar biosynthet... 159 1.3e-08 1
UNIPROTKB|Q48GG0 - symbol:flhF "Flagellar biosynthesis pr... 139 1.9e-06 1
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 134/302 (44%), Positives = 202/302 (66%)
Query: 71 EKIFSGFSKTRDNLAV-IDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRD 129
E++ G SKTRD+L ID L+L D D L+ELEE L+ +D G + T++++ L
Sbjct: 52 ERLKQGLSKTRDSLVGRIDRLVLGKKEIDAD-TLEELEEILITADLGVQTTVELIRGLEQ 110
Query: 130 DILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGK 189
+ +LK G +++ALK + L + + +L + P V++++GVNG GKTT++GK
Sbjct: 111 RLSRNELKDGEALREALKEDIHGRLARDAH--QLDVTGASPFVIMVIGVNGVGKTTTIGK 168
Query: 190 LAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG 249
LA R +G K+++AAGDTFRAAA++QL+IW ERTG + V+ E A S+V+ ++K
Sbjct: 169 LAARFTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVD-VIRHKEGADPSAVVFDSIKAA 227
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
+G DI++ DT+GRLHT +LMEEL ++ + + + GAP+E LLVLD TG N L QA
Sbjct: 228 VARGADILIVDTAGRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQA 287
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
+ F + +TG+ LTKLDG+A+GG VV++ +E IPV+++GVGEG++DL+ FD FV A
Sbjct: 288 KLFKEAAQVTGIALTKLDGTAKGGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQFVEA 347
Query: 370 IF 371
+F
Sbjct: 348 LF 349
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 124/321 (38%), Positives = 209/321 (65%)
Query: 54 FFTRLGRLIKEKAKSDVEKIFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLV 112
FF +L I ++ + EK G KTR++ A +++L+ + D D +ELEE L+
Sbjct: 3 FFKKLKEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDED-FFEELEEILIG 61
Query: 113 SDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKT-ELQLGYRKPA 171
+D G +++++ L++++ ++ +++ + ++++ + T E+ +
Sbjct: 62 ADVGVSTVMELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKDGLT 121
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
VVL VGVNG GKTT++GK+A++ K+EG +L+AAGDTFRA A +QLE+W +R G E V+
Sbjct: 122 VVLFVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVE-VIK 180
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G + ++V+ AV+ K + D++LCDT+GRL +LM+EL K+ + + V GAP+
Sbjct: 181 QGSGSDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPH 240
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E+LLV+D TTG N L QA+ F + +TG++LTKLDG+A+GG V+++ +E+ +PVKFVG+
Sbjct: 241 EVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGL 300
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GE ++DLQ FD E +V +F+
Sbjct: 301 GEQMDDLQQFDPEQYVYGLFA 321
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 128/302 (42%), Positives = 194/302 (64%)
Query: 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
+++ KT+ N+ E + + D +++ ++LEE L+ D G + ++++VE LR
Sbjct: 5 DRLKESLIKTKQNIVAKIEDVFKKSTVD-EELFEKLEEILIEGDVGVKPSLELVEKLRKT 63
Query: 131 ILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKL 190
++ +K LK +L +L NK L+ R P V+L+VGVNG GKTT++GKL
Sbjct: 64 ARERRITDSEQLKQVLKEEILKILEAGDNK--LKNVPRTPLVILVVGVNGVGKTTTIGKL 121
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK 250
AY K +G ++L+AAGDTFRAAA +QLEIW + GC V+ + E + ++V AVK
Sbjct: 122 AYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCP-VIKQKEGSDPAAVAFDAVKAAI 180
Query: 251 EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAR 310
+ D+++ DT+GRLHT +LMEEL K+ + + + GAP+E+LLVLD TTG N L Q
Sbjct: 181 ARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVE 240
Query: 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
FN + +TGL+LTKLDG+A+GG ++ + IP+KF+GVGE ++DL+PFD + FV A+
Sbjct: 241 YFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEAL 300
Query: 371 FS 372
FS
Sbjct: 301 FS 302
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 127/321 (39%), Positives = 201/321 (62%)
Query: 57 RLGRLIKEKAKSDV---EKIFSGFSKTRDNLA--VIDELLLYWNLADTDKVLDELEEALL 111
++ ++ EKA+S + ++ G SKTR NL +ID L+ D + +ELE LL
Sbjct: 165 KVEEIVDEKAESKLGFFARLKQGLSKTRQNLGGGLID---LFRGKQIDDDLFEELETHLL 221
Query: 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171
++D G T+KI+ESL +LK + D LK + ++ + P
Sbjct: 222 LADVGVETTMKIIESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPED-DGPF 280
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
V+L+VGVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W ER V+A
Sbjct: 281 VILMVGVNGVGKTTTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIP-VIA 339
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+ A ++SV+ A+ K + DI++ DT+GRL LMEEL + + K+ AP+
Sbjct: 340 QHTGADSASVIFDAISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPH 399
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E++L LD TG N L Q + F++ VG+TGL +TKLDG+A+GG + +V D+ IP++++GV
Sbjct: 400 EVMLTLDAGTGQNALSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGV 459
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GEG++DL+PF+++ F++A+FS
Sbjct: 460 GEGIDDLRPFNSDDFIDALFS 480
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 122/315 (38%), Positives = 201/315 (63%)
Query: 60 RLIKEK--AKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGP 117
R+++++ +S ++ S+T+ N+ L D D + +ELEE LL++D G
Sbjct: 77 RIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDD-LFEELEEQLLIADVGM 135
Query: 118 RITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVG 177
T KI+ +L +L+ G + LK + ++L++ + +KP V+L+VG
Sbjct: 136 DTTSKIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTE-KKPYVILMVG 194
Query: 178 VNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237
VNG GKTT++GKLA + + +G K+++AAGDTFRAAA +QL++W ER V+A+ A
Sbjct: 195 VNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVP-VIAQHTGAD 253
Query: 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVL 297
++SV+ A++ K +G D+V+ DT+GRL +LMEEL + + K+ + AP+EI+L L
Sbjct: 254 SASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTL 313
Query: 298 DGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVED 357
D TG N + QA+ F+DV ITG+ LTKLDG+A+GG + ++ D+ IP++++GVGE ++D
Sbjct: 314 DAGTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDD 373
Query: 358 LQPFDAEAFVNAIFS 372
L+PF + F++A+FS
Sbjct: 374 LRPFATQEFIDALFS 388
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 121/316 (38%), Positives = 199/316 (62%)
Query: 61 LIKEKAKSDVEKIFSGFS----KTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFG 116
+ +E+ K E F+ KT++NL + L+ D + +ELEE LL++D G
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGS-GFISLFRGKKIDDDLFEELEEQLLIADVG 241
Query: 117 PRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIV 176
T KI+ +L + +L+ + LK + ++L K ++ G + P V+L+V
Sbjct: 242 VETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-G-KAPFVILMV 299
Query: 177 GVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA 236
GVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R V+A+ A
Sbjct: 300 GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIAQHTGA 358
Query: 237 KASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLV 296
++SV+ A++ K + D+++ DT+GRL LMEEL + + K+ AP+E++L
Sbjct: 359 DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418
Query: 297 LDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVE 356
+D +TG N + QA+ F++ VG+TG+ LTKLDG+A+GG + SV D+ GIP++++GVGE +E
Sbjct: 419 IDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIE 478
Query: 357 DLQPFDAEAFVNAIFS 372
DL+PF A+ F+ A+F+
Sbjct: 479 DLRPFKADDFIEALFA 494
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 131/311 (42%), Positives = 196/311 (63%)
Query: 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
+++ +G +KTR+ L + W + ++VL+ELE ALL +D G T +I++ +R
Sbjct: 5 DRLKAGLAKTRERLLKA----IPWG-GNLEEVLEELEMALLAADVGLSATEEILQEVR-- 57
Query: 131 ILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQ-LGYR----KPA-----VVLIVGVNG 180
+G+ D+K+A+K ++ +L + L+ LG+ KP VVL+VGVNG
Sbjct: 58 -ASGR----KDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNG 112
Query: 181 GGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 240
GKTT++ KL +N G K++ AGDTFRAA QL W +R I V +G + +
Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLS--IPVIQGPEGTDPA 170
Query: 241 VLS-QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG 299
L+ AV+ K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD
Sbjct: 171 ALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230
Query: 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQ 359
TG N L QA++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQ
Sbjct: 231 VTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQ 290
Query: 360 PFDAEAFVNAI 370
PFD EAFV A+
Sbjct: 291 PFDPEAFVEAL 301
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 125/274 (45%), Positives = 178/274 (64%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D D D +E+ LLV+D GP T +V LR + +G +++ D + L++ +++ L
Sbjct: 151 DEDSWQD-VEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDVLINELQPG 209
Query: 158 GNKTELQLGYR-KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
+++ L + P+V+L+VGVNG GKTT++GKLA L +G ++++ A DTFRAAA+DQ
Sbjct: 210 MDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQ 269
Query: 217 LEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELV 276
L+ WA R G +V E A +SV AV +G G D+VL DT+GRLHT LM+EL
Sbjct: 270 LQTWAARVGAAVVRGP-EGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELD 328
Query: 277 ACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVV 336
K+ V + + +E+LLVLD T G N L QAR F +VV I+G +LTKLDG+A+GG V
Sbjct: 329 KVKRVVTR--RASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVF 386
Query: 337 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
V ELG+PVK VG+GEG +DL PF+ AFV+A+
Sbjct: 387 RVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDAL 420
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 113/301 (37%), Positives = 187/301 (62%)
Query: 72 KIFSGFSKTRDNLAV-IDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
++ +TR L + L+L D +L+ELE LL +D G T I+ +L
Sbjct: 27 RLNESLKRTRSRLTDGLSNLVLGKKTIDAS-LLEELEMILLSADIGIEATQSILNNLSQQ 85
Query: 131 ILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKL 190
+ L + DALK +L++L E+ P V+L VGVNG GKTT++ KL
Sbjct: 86 VARKSLSDPKALIDALKIELLNILEPCQKHLEISAS---PFVILTVGVNGVGKTTTIAKL 142
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK 250
A+ +++ ++++AAGDTFRAAA +QL+ W +R V+A+ A ++SV+ A++
Sbjct: 143 AHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAP-VIAQQPGADSASVIYDAMEAAT 201
Query: 251 EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAR 310
+ +D+++ DT+GRLHT LM+EL K+ + K+ AP+E LLVLD TG N + QA
Sbjct: 202 ARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQAE 261
Query: 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+F++ +G+TG+ +TKLDG+A+GG + ++ ++ +P++F+G+GE +EDL+PF+A+ F+ A+
Sbjct: 262 QFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKPFNAKEFIAAL 321
Query: 371 F 371
F
Sbjct: 322 F 322
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 110/271 (40%), Positives = 170/271 (62%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGN 159
D +L++LEE L+ +D G +++ ++ + + KL S +IK L + ++
Sbjct: 118 DDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKL-STQEIKALLAQEITRIMEPVAR 176
Query: 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI 219
+ L ++P VVL+VGVNG GKTT++GKLA + K G K+++AAGDTFRAAA +QL++
Sbjct: 177 P--MPLYPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQLQV 234
Query: 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACK 279
W +R G ++ A E + +S+ A+ R +E G D++L DT+GRL LMEEL
Sbjct: 235 WGDRAGVPVLTAP-EGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEELAKIV 293
Query: 280 KAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVV 339
+ + K + AP+ LLVLD TTG N + Q F + ++GL++TKLDG+A+GG +VS+
Sbjct: 294 RVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGILVSLA 353
Query: 340 DELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
D G+P+ +GVGE ++DL PFD E F A+
Sbjct: 354 DRFGLPIHAIGVGEQIDDLAPFDPEDFAAAL 384
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 114/312 (36%), Positives = 194/312 (62%)
Query: 65 KAKSDVEKIFS----GFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRIT 120
+AK E F+ G +T +N+ + L+ D++ +ELEE LL++D G T
Sbjct: 196 QAKPAKESFFARLKRGLMRTSENIGS-GFIGLFRGKKIDDELFEELEEQLLIADVGVETT 254
Query: 121 IKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNG 180
++++SL + +LK + D L++ + L + P V+L+VGVNG
Sbjct: 255 GRLIKSLTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPE-NANGPFVILMVGVNG 313
Query: 181 GGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 240
GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R VVA+ A ++S
Sbjct: 314 VGKTTTIGKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VVAQHTGADSAS 372
Query: 241 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGT 300
VL A++ K + D+++ DT+GRL LMEEL + + K+ AP+E++L LD +
Sbjct: 373 VLFDALQAAKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDAS 432
Query: 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 360
TG N + QA+ F + VG+TG+ ++KLDG+A+GG V ++ D+ IP++++GVGE ++DL+
Sbjct: 433 TGQNAISQAQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRT 492
Query: 361 FDAEAFVNAIFS 372
F+++ F++A+F+
Sbjct: 493 FNSKEFIDALFT 504
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 116/302 (38%), Positives = 176/302 (58%)
Query: 71 EKIFSGFSKTRDNL-AVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRD 129
EK KTR A ++ + D ++ +ELEE L++SD G ++ + E LR
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVD-EEFFEELEELLIMSDVGVQVASNLTEELRY 184
Query: 130 DILAGKLKSGPDI-KDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLG 188
+ K PD+ + + +++L K G+ E V+L VGVNG GKTTS+G
Sbjct: 185 EAKLENAKK-PDVLRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIG 243
Query: 189 KLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKR 248
KLA+R K G K+++ A DTFRA A QL W R +V EKA +SV+ ++R
Sbjct: 244 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGP-EKADPASVVFDGMER 302
Query: 249 GKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQ 308
+G DI++ DT+GRL +LM EL + + +VV AP+E L LD +TG N L Q
Sbjct: 303 AVTEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQ 362
Query: 309 AREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVN 368
A+EF+ + +TG++LTK+DG+ARGG V+++ +EL IPVK +G GE ++D+ F++E F+
Sbjct: 363 AKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMK 422
Query: 369 AI 370
+
Sbjct: 423 GL 424
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 113/308 (36%), Positives = 186/308 (60%)
Query: 67 KSDVEKIFSGFSKTRDNLAV-IDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVE 125
KS I + +K+RD L+ ID + ++++ +++LEE L+ +D GP +T +I++
Sbjct: 3 KSVFSSIRNSITKSRDYLSSGIDNIFAKEKISES--TIEQLEELLISADIGPTVTERIIK 60
Query: 126 SLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRK--PAVVLIVGVNGGGK 183
+++ K+K G ++ +K+ + + K + T +L + + P V++ GVNG GK
Sbjct: 61 TVKKI----KVKDGESLEQ-VKSITREEMKKVLDPTSKKLIFPQTGPQVIVFCGVNGNGK 115
Query: 184 TTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS 243
TT++GKLAY+ E +++AA D FRAAA +QL WAER +E K AS
Sbjct: 116 TTTIGKLAYKFIQENKTVMIAACDLFRAAAIEQLRFWAERASATFFSSETSK-NASGTAY 174
Query: 244 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGL 303
+A+++ E D+++ DTSGRLHT LMEEL + + K++ APNE++L LD +TG
Sbjct: 175 KALEKALEDKVDVLIVDTSGRLHTQNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQ 234
Query: 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL-GIPVKFVGVGEGVEDLQPFD 362
N L Q + F D V +TGL++TKLDG+++GG +V++ + + + FVG GE + DL+ F
Sbjct: 235 NALNQVQVFKDAVNLTGLVVTKLDGTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFS 294
Query: 363 AEAFVNAI 370
FV+A+
Sbjct: 295 PSEFVDAL 302
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 110/302 (36%), Positives = 177/302 (58%)
Query: 68 SDVEK-IFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVES 126
S+++K +F SK D I ++ D + L+EL+E L+ +D G
Sbjct: 11 SNIKKGLFKTSSKLSDG---IKKIFSSGKKVDQE-TLEELKELLITADVG----YDNASL 62
Query: 127 LRDDILAGKLKSGPD--IKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKT 184
L + + K D +K L S+ ++L + + KP V+++ G NG GKT
Sbjct: 63 LTQKLASTKFNEMDDNTVKQKLAESIENILLQVEKPLSIN---NKPHVIMVCGTNGNGKT 119
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T++GKLA+R KN G K+L+AA DTFRAAA++QL +W+++ +V + A A+S+ Q
Sbjct: 120 TTIGKLAHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGN-QGADAASIAYQ 178
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
A+++ + D++L DT+GRLH + +LMEEL ++ + K N AP++++L+LD TTG N
Sbjct: 179 AMQQALNEQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQN 238
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
+ Q F V I+GLI+TKLDG+A+GG V+ + + + + +G+GE VE LQ F A+
Sbjct: 239 AVNQVDAFLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAK 298
Query: 365 AF 366
F
Sbjct: 299 EF 300
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 108/268 (40%), Positives = 161/268 (60%)
Query: 104 DELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTEL 163
D LEE LL +D I +I+ L ++K D+K + + L KK E
Sbjct: 29 DLLEEILLEADVSYEIVEEIIYYLPPQ---NEVKK-EDLKRVMGSYFL--YEKKETNQE- 81
Query: 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223
KP V LI+GVNG GKTTS+ KLAY KN+ K+++ A DTFRA A +QL++WA++
Sbjct: 82 -----KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQK 136
Query: 224 TGCEIVV-AEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAV 282
+IV+ A+G S+V + + K + FD V+ DT+GRL +L EL +
Sbjct: 137 VDVDIVLTAQGHDP--SAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRIS 194
Query: 283 GKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342
K + GAP+ +LVLDGT G + QA+ FN++V + G+I+TKLDG+A+GG + S+ EL
Sbjct: 195 NKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIAREL 254
Query: 343 GIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+P+ +VGVGE + DLQ F+A A+++ +
Sbjct: 255 ELPIFYVGVGEQMTDLQEFNANAYLDTL 282
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 104/296 (35%), Positives = 164/296 (55%)
Query: 76 GFSKTRDNLAVIDELLLYWNLADTDK-VLDELEEALLVSDFGPRITIKIVESLRDDILAG 134
G SKT L+ ++ AD D+ L L + L+ +D GP + + + L
Sbjct: 14 GLSKTSARLSE-GIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFFTQKI--STLKF 70
Query: 135 KLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194
+++ L + + + L + + P ++L+ GVNG GKTT++ KLA++
Sbjct: 71 TDSVAEEVRLKLASEIENFLQPRSAPITIT---HTPHIILLCGVNGSGKTTTVAKLAHKF 127
Query: 195 KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGF 254
+ +++ A DTFRAAA +QL +WAER C IV A A+SV + V+R ++ F
Sbjct: 128 MKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGT-IGADAASVAYKTVERAVKEPF 186
Query: 255 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFND 314
D+V+ DT+GRLH + +LMEEL + + + AP++I+LVLD T G N Q F+
Sbjct: 187 DVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQVEMFSS 246
Query: 315 VVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
V + GLILTKLDG+A+GG V+ V + + + +G GEG+EDL+ F A F ++
Sbjct: 247 FVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSL 302
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 106/276 (38%), Positives = 150/276 (54%)
Query: 88 DELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147
+E+L N+A+ + ++ ALL +D + + V+S+ D + + G L
Sbjct: 95 EEVLTKDNIAEP---MRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLV 151
Query: 148 NSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205
V D L K G +ELQ P V+L+ G+ G GKTT KLA LK +G ++ A
Sbjct: 152 KIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIA 211
Query: 206 GDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRL 265
GD +R AA DQL I E+ G + A G K + + Q +K K+ D+V+ DT+GRL
Sbjct: 212 GDVYRPAAIDQLVILGEQVGVPVYTA-GTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRL 270
Query: 266 HTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTK 325
+ +M+EL K V K +N P E+LLV+D TG FN +GITG ILTK
Sbjct: 271 QIDKGMMDEL----KDVKKFLN--PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTK 324
Query: 326 LDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 361
LDG +RGG +SV + G P+K VG GE +EDL+PF
Sbjct: 325 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF 360
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 100/289 (34%), Positives = 165/289 (57%)
Query: 76 GFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK 135
GFS L+ E+ + D D V++++ +ALL +D + + +E+++ I+ G
Sbjct: 8 GFSSALQRLSGKREI----SSKDFDLVIEDITQALLDADVNLGVVDEFIENVKSKIVGGD 63
Query: 136 LKSG--PDIKDALKNSVLDLLTKKGN-KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY 192
+ G P+ + +K L+ GN K+ L L + PAV+++VG+ G GKTT+ K+A
Sbjct: 64 VVKGVLPE-QMVIKRIEECLIEVLGNEKSALDLKGKIPAVIMMVGLQGVGKTTNTVKVAL 122
Query: 193 RLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252
RLK + L+A+ D +R AA +QL++ A+ G + + E+ K + +A++ + +
Sbjct: 123 RLKKDSKNPLVASLDVYRPAAREQLKVLADGVGIDSLPIV-EEQKPLDIAKRAMREARLK 181
Query: 253 GFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREF 312
G D+VL DT+GRLH N +++EL KK V +P EI+LV+D G + + R+F
Sbjct: 182 GHDVVLLDTAGRLHINQDMIDELKCVKKEV------SPAEIVLVVDSLMGQDAVTMVRKF 235
Query: 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 361
N+ +GITG I T+ DG RGG ++S+ G P+KF+ GE EDL F
Sbjct: 236 NEELGITGTIFTRADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDF 284
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 375 (137.1 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 92/271 (33%), Positives = 149/271 (54%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK-GNK- 160
L ++ AL+ +D + +E +R+ L ++ +AL V D LT G++
Sbjct: 31 LHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQDELTHLLGDEL 90
Query: 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLA-YRLKNEGAKILMAAGDTFRAAASDQLEI 219
E+ L + P V+++ G+ G GKTT++ KLA + L+ + +++A+ D +R AA QLE
Sbjct: 91 VEINLNAQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVASADVYRPAAIQQLET 150
Query: 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACK 279
A + + ++ K + A+K+ ++Q D+++ DT+GRLH + LMEE+ A
Sbjct: 151 LASQINAIFFPTQADQ-KPVEIAKAALKQAEKQFMDVLILDTAGRLHIDNVLMEEMKAIS 209
Query: 280 KAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVV 339
AV P EILLV+D G + A+ FND + +TG+ILTKLDG RGG +S+
Sbjct: 210 DAV------TPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKLDGDTRGGAALSMR 263
Query: 340 DELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
P+KFVGVGE ++ L+PF + I
Sbjct: 264 MITQKPIKFVGVGEKIDALEPFHPNRMASRI 294
Score = 40 (19.1 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 41 TNRFKCSAGGQTGFFTRLGRLIKEKAKSDVEKIFSGFSKTRDNLAVIDELL 91
TNR S G LGRL +E +S + I S + L V+ + +
Sbjct: 6 TNRLTTSINKLRG----LGRLTEENIQSTLHDIRSALIEADVALPVVKDFI 52
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 88/276 (31%), Positives = 155/276 (56%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D D ++E++ ALL +D + + ++++ I+ G G + + D L +
Sbjct: 26 DFDAAMEEVKVALLEADVSLAVVKDFISNVKEKIVGGTTVKGVLPTQMIIKKIQDCLIEV 85
Query: 158 GNKTELQLGYRKP-AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
+ +L KP +V+++VG+ G GKTT+ KLA +LKN+ +++MA+ D +R AA Q
Sbjct: 86 LGSEKCELDISKPLSVIMMVGLQGVGKTTTTAKLALKLKNKKKEVVMASLDVYRPAAQKQ 145
Query: 217 LEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELV 276
LEI ++ + + +A ++ +A+ ++ D+++ DT+GRLH + +MEEL
Sbjct: 146 LEILGKQIDVQTLPIIENQAPID-IVKRAMDNAQQANCDVLILDTAGRLHVDQVMMEELR 204
Query: 277 ACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVV 336
A K +P+E++LV+D G + + A+ FND +GITG+ILT++DG +RGG +
Sbjct: 205 AIKDLT------SPSEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGDSRGGAAL 258
Query: 337 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372
S+ +G P+KF+ GE + DL F E I +
Sbjct: 259 SMKMSVGSPIKFIANGEKLSDLDDFYPERIAKRILN 294
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 95/277 (34%), Positives = 154/277 (55%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK-LKS---GPDIKDALKNSVLDL 153
D + L E+ ALL +D ++ + +++ + + L+S G + + +++L
Sbjct: 27 DVNLALREVRIALLEADVNFQVVKDFIAKVKEKAVGHEVLESLTPGQQVIKIVHEELINL 86
Query: 154 LTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAA 213
+ K K G P ++++VG+ G GKTT+ KLAY LK +G K L+ A D +R AA
Sbjct: 87 MGKTNAKLN-DAG-SPPTIIMLVGLQGAGKTTTAAKLAYLLKKQGKKPLLVAADVYRPAA 144
Query: 214 SDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLME 273
QL++ + + GE++ + ++ K + V+ DT+GRLH N LM+
Sbjct: 145 IKQLQVLGDTIDVPVFTM-GEQSPVD-IAKASINFAKSNLKNYVIIDTAGRLHINEELMD 202
Query: 274 ELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333
EL K + VV+ P+EILLV+D TG + + A+ FND +G+TG+ILTKLDG +GG
Sbjct: 203 EL----KKIKDVVH--PHEILLVVDAMTGQDAVNVAKSFNDELGLTGVILTKLDGDTKGG 256
Query: 334 CVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+SV G P+KF G+GE +E+L+PF + + I
Sbjct: 257 AALSVKAVTGCPIKFAGMGEKIENLEPFYPDRMASRI 293
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 103/303 (33%), Positives = 169/303 (55%)
Query: 77 FSKTRDNLA-VIDELLLYWNLADTD--KVLDELEEALLVSDFGPRITIKIVESLRDDILA 133
F + L+ V D L L++ D L E+ ALL +D + V++++D
Sbjct: 2 FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61
Query: 134 GKL-KS---GPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGK 189
+ KS G + + ++++D+L + +L++ PA +L+VG+ GGGKTT+ K
Sbjct: 62 QAVTKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKID-NPPAPILMVGLQGGGKTTTTAK 120
Query: 190 LAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGCEIV-VAEGEKAKASSVLSQAVK 247
LA RLK EG K+LMA+ D +R AA DQL + + G + + + G+K + +A +
Sbjct: 121 LAKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIGVDTLPIVPGQKPV--DIAKRAKQ 178
Query: 248 RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307
+ G+D+ + DT+GRLH + LM+E+ + V VV P E LLV+DG TG +
Sbjct: 179 QAMMGGYDVYMLDTAGRLHIDQVLMQEV----EDVRNVVT--PRETLLVVDGLTGQVAVE 232
Query: 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
A EF+ +GI+G++LT++DG RGG +S+ G P++FVG+GE ++ L+ F+ E
Sbjct: 233 VAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIA 292
Query: 368 NAI 370
I
Sbjct: 293 GRI 295
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 98/282 (34%), Positives = 165/282 (58%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL-KS---GPDIKDALKNSV 150
N+ DT L E+ ALL +D + + + +++ + ++ KS G + ++N +
Sbjct: 26 NVKDT---LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNEL 82
Query: 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK-ILMAAGDTF 209
+ + ++ N+T L L + PAVVL+ G+ G GKTTS+GKL L+ + K +L+ + D +
Sbjct: 83 VAAMGEE-NQT-LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140
Query: 210 RAAASDQLEIWAERTGCEIVVAE-GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTN 268
R AA QLE AE+ G + ++ G+K +++ A+K K + +D++L DT+GRLH +
Sbjct: 141 RPAAIKQLETLAEQVGVDFFPSDVGQKPV--DIVNAALKEAKLKFYDVLLVDTAGRLHVD 198
Query: 269 YSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDG 328
++M+E+ K V +N P E L V+D TG + A+ FN+ + +TG++LTK+DG
Sbjct: 199 EAMMDEI----KQVHASIN--PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 252
Query: 329 SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
ARGG +S+ G P+KF+GVGE E L+PF + + I
Sbjct: 253 DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 94/268 (35%), Positives = 151/268 (56%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTE 162
L+ L++ALL +D ++T +++ + +D+ + +A+K ++ ++L+ G
Sbjct: 29 LETLKKALLKADVHHKVTKELLTLIEEDVKQNGIGQ-KQFLNAIKVNLENILSVNGKNQG 87
Query: 163 LQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222
+ P VVL+ G+ GGGKTTS KLA LK K+L+AA D R AA +QL E
Sbjct: 88 FVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCE 147
Query: 223 RTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAV 282
E+ E EK V +A+K+ + D++L DT+GRL + +LM EL KAV
Sbjct: 148 ANEIELFFIENEKDPIR-VAKEALKKAESSMVDVLLVDTAGRLAIDEALMNEL----KAV 202
Query: 283 GKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342
V+N P+EI V D +G + + A FN+ + I+G+IL+K D +GG + + ++
Sbjct: 203 KDVLN--PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQI 260
Query: 343 GIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
GIP++F+GVGE V DL+ F + V+ I
Sbjct: 261 GIPLRFIGVGEKVADLEVFIPDRIVSRI 288
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 95/275 (34%), Positives = 147/275 (53%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRI 291
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 96/280 (34%), Positives = 154/280 (55%)
Query: 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDIL-AGKLKS---GPDIKDALKNSVLD 152
AD L E+ ALL +D + + +R+ + A LKS G + + + +++
Sbjct: 25 ADVAAALREVRRALLEADVALEVVRSFTDRVREKAVGAAVLKSIKPGQMVVKIVHDELVE 84
Query: 153 LLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRA 211
+L +G +L P V+++VG+ G GKTT+ GK+A RL + + K+LMA+ DT R
Sbjct: 85 MLGTEGVSIDLHAA--APVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRP 142
Query: 212 AASDQLEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYS 270
AA +QL +TG + + + G+ + + ++AV+ K G D+V+ DT+GR H +
Sbjct: 143 AAQEQLRQLGVQTGVDTLPIIAGQSP--TDIAARAVQAAKLGGHDVVILDTAGRTHIDEP 200
Query: 271 LMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSA 330
LM E+ KK P+EILLV D TG + + AR F++ VGITGL+LT++DG
Sbjct: 201 LMLEMADIKK------KSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDG 254
Query: 331 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
RGG +S+ G P+K +G+GE + +L F + I
Sbjct: 255 RGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 91/280 (32%), Positives = 154/280 (55%)
Query: 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRD-----DILAGKLKSGPDIKDALKNSVL 151
AD +++ E+ ALL +D ++ V+ + + D++ L G + ++ +
Sbjct: 26 ADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAVGQDVMKS-LTPGQQVIKVVQEELT 84
Query: 152 DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL-KNEGAKILMAAGDTFR 210
+L+ G ++++ + + P V+++VG+ G GKTT+ GKLA L K K ++ A D +R
Sbjct: 85 ELMG--GEQSKIAIANKPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYR 142
Query: 211 AAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYS 270
AA QLE ++ V + G++ + QA+ + KE D VL DT+G LH +
Sbjct: 143 PAAIKQLETLGKQLDMP-VFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEE 201
Query: 271 LMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSA 330
LM+EL K+ V K P+EI LV+D TG + + A+ F++ +G+TG++LTKLDG
Sbjct: 202 LMDELAKVKE-VAK-----PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDT 255
Query: 331 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
RGG +S+ P+KF G+GE ++ L+ F E + I
Sbjct: 256 RGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASRI 295
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 101/303 (33%), Positives = 160/303 (52%)
Query: 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
E + SKT N++ L N+ DT L E+ ALL +D + V +++
Sbjct: 3 ENLTDRLSKTLKNISGKGRLTED-NIKDT---LREVRMALLEADVALPVVRDFVNRVKEG 58
Query: 131 ILAGKL-KSGPDIKDALKNSVLDLLTKKGNKTE-LQLGYRKPAVVLIVGVNGGGKTTSLG 188
+ ++ KS ++ +K L G E L L + PAV+L+ G+ G GKTTS+G
Sbjct: 59 AVGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVG 118
Query: 189 KLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVK 247
KL+ LK + K+L+ + D +R AA QLE A G + + ++ K + + A+
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQ-KPIDIANAAID 177
Query: 248 RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307
K++ +D+++ DT+GRL + +M E+ A KA+ P E L V+D TG +
Sbjct: 178 HAKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAAD 231
Query: 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
A+ F D + +TG+ILTK+DG ARGG +SV G P+KF+GVGE + L+PF +
Sbjct: 232 TAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIA 291
Query: 368 NAI 370
+ I
Sbjct: 292 SRI 294
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 99/295 (33%), Positives = 152/295 (51%)
Query: 77 FSKTRDNLAVIDELLLYWNLADTDKVLDELEEAL-LVSDFGPRITIKIVESLRDDILAGK 135
F K R V+ E + L + VL E + +V DF R+ ++ V + +L
Sbjct: 13 FKKLRGQ-GVMSEENIKEALREVRLVLLEADVNFKVVKDFVERVRVRAVGT---QVLQS- 67
Query: 136 LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195
L G + ++ ++ L+ G L L + P +++VG+ G GKTTS GKLA LK
Sbjct: 68 LTPGQQVIKIVQEELVALMGG-GEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLK 126
Query: 196 NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFD 255
+ + L+ D +R AA +QL+ + E+ + ++ + +A++ GFD
Sbjct: 127 GQRRRPLLVPADVYRPAAIEQLKTLGRQLSVEVFDSRADQDPVD-ICREALRYATLNGFD 185
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+V+ DT+GR + LM ELV K+A P EIL V D TG + A FND
Sbjct: 186 VVILDTAGRHQIDEYLMNELVRIKEAA------EPREILFVADAMTGQEAVNVASGFNDR 239
Query: 316 VGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+ ITG++LTKLDG A+GG +S+ G PVK VGVGE ++ L+ F A+ V+ I
Sbjct: 240 LDITGVVLTKLDGDAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRI 294
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 98/296 (33%), Positives = 155/296 (52%)
Query: 78 SKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL- 136
SKT N++ L N+ +T L E+ ALL +D + + + +++ + +
Sbjct: 10 SKTLKNISGRGRLTED-NIKET---LREVRMALLEADVALPVIREFIAKVKEKAVGTDVS 65
Query: 137 KSGPDIKDALKNSVLDLLTKKGNKTE-LQLGYRKPAVVLIVGVNGGGKTTSLGKLA-YRL 194
KS + +K +L + G E L L PAVVL+ G+ G GKTTS+ KLA +
Sbjct: 66 KSLTPGQIFVKIVQKELESAMGEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLAKFLT 125
Query: 195 KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGF 254
+ E K+L+ + D +R AA QLE AE ++ K K + + A+ K+ +
Sbjct: 126 EREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSD-IKQKPIDIANAAIDHAKKNFY 184
Query: 255 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFND 314
D+++ DT+GRLH + ++M E+ A+ P E L +D TG + A+ FND
Sbjct: 185 DVLIVDTAGRLHIDENMMAEIQQLHAAIN------PIETLFTVDAMTGQDAANTAKAFND 238
Query: 315 VVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+ +TG+ILTK DG ARGG +S+ G P+KF+GVGE +E L+PF + + I
Sbjct: 239 ALPLTGIILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIASRI 294
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 357 (130.7 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 93/282 (32%), Positives = 144/282 (51%)
Query: 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPD-IKDALKNSVLDLLT 155
AD D E+ ALL +D + + +++ ++ S + + +K +L++
Sbjct: 25 ADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELIS 84
Query: 156 KKGNKT-ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAAS 214
G +T EL P VV++ G+ G GKTT GKLA RL+ +G L+ A D R AA
Sbjct: 85 ILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAV 144
Query: 215 DQLEIWAERTGCEIVV----AEGEKAKAS--SVLSQAVKRGKEQGFDIVLCDTSGRLHTN 268
+QL++ ER G + A E +V + + + + FD+V+ DT+GRL
Sbjct: 145 NQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRL--- 201
Query: 269 YSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDG 328
+ EEL+A A+ +N P+E+L VLD G + + A F + VG TG+ LTKLDG
Sbjct: 202 -GIDEELMAQAAAIRDAIN--PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDG 258
Query: 329 SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
ARGG +SV + G+P+ F GE +ED F + + I
Sbjct: 259 DARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 96/303 (31%), Positives = 155/303 (51%)
Query: 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
E + S+T N++ L N+ +T L E+ ALL +D + + V ++++
Sbjct: 3 ENLTDRLSRTLKNISGRGRLTEE-NVKET---LREVRMALLEADVALPVVREFVNNVKER 58
Query: 131 ILAGKLKSGPDIKDALKNSVLDLLTKK-GNKTE-LQLGYRKPAVVLIVGVNGGGKTTSLG 188
+ ++ A V L K G + L L + PAVV++ G+ G GKTTS+
Sbjct: 59 AVGQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVA 118
Query: 189 KLAYRLKNEGAK-ILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVK 247
KL L+ K +L+ + D +R AA QLE A E ++ + K + A+
Sbjct: 119 KLGKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQ-KPIDIAKAAIA 177
Query: 248 RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307
K + D+V+ DT+GRLH + ++M+E+ A A+ P E L V+D TG +
Sbjct: 178 HAKLKFIDVVILDTAGRLHVDEAMMDEIKALHAAL------KPIETLFVVDAMTGQDAAN 231
Query: 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
A+ FN+ + +TG+ILTK+DG ARGG +S+ G P+KF+GVGE + L+PF +
Sbjct: 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291
Query: 368 NAI 370
+ I
Sbjct: 292 SRI 294
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 351 (128.6 bits), Expect = 6.6e-32, P = 6.6e-32
Identities = 95/277 (34%), Positives = 147/277 (53%)
Query: 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK 156
+D + E+ ALL +D + ++ +R+ + ++ + + V + LT
Sbjct: 26 SDVQEATKEIRLALLEADVALPVVKDFIKKVRERAVGHEVIDTLNPAQQIIKIVDEELTA 85
Query: 157 K-GNKT-ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDTFRAAA 213
G+ T E+ + P ++++VG+ G GKTT GKLA +LK E A+ LM A D +R AA
Sbjct: 86 VLGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAA 145
Query: 214 SDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLME 273
DQL+ ++ V A G + A ++ Q +++ + D VL DT+GRL + LM
Sbjct: 146 IDQLKTLGQQIDVP-VFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMN 204
Query: 274 ELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333
EL K A+ + PNEILLV+D G AREFN + +TG+ILTK+DG RGG
Sbjct: 205 ELRDVK-ALAQ-----PNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGG 258
Query: 334 CVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+SV G P+KF G GE + D++ F + + I
Sbjct: 259 AALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSRI 295
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 343 (125.8 bits), Expect = 7.6e-31, P = 7.6e-31
Identities = 88/280 (31%), Positives = 145/280 (51%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILAG----KLKSGPDIKDALKNSVLD--- 152
D +L + ALL SD + K+ ++R +L+ K + K ++ +V D
Sbjct: 30 DVMLKGIVTALLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELC 89
Query: 153 -LLTKKGNKTELQLGY-RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210
L+T +G++ + + RK +++ VG+ G GKTTS KLA G K+ + DTFR
Sbjct: 90 KLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFR 149
Query: 211 AAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYS 270
A A DQL+ A R + E A V + + + K++ FDI++ DTSGR H
Sbjct: 150 AGAFDQLKQNAIRARIPFYGSYTETDPAK-VAEEGINKFKKEKFDIIIVDTSGRHHQEEE 208
Query: 271 LMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSA 330
L +E++ + V+ PN+ ++VLD + G Q++ F + +ILTK+DG A
Sbjct: 209 LFQEMIE----ISNVIK--PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHA 262
Query: 331 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
RGG +S V P+ F+G GE + DL+ F ++F++ +
Sbjct: 263 RGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKL 302
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 340 (124.7 bits), Expect = 8.9e-31, P = 8.9e-31
Identities = 97/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCAALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
A ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KAAIDLEEMASGLNKRRMIQHAVFKELVKLVDPGVKAWTPTK-GKNNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + ++
Sbjct: 116 TTCSKLAYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IAAE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ AV P+ I+ V+D + G
Sbjct: 175 GVEKFKSENFEIIIVDTSGRHKQEDSLFEEMLQVSNAV------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 339 (124.4 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 339 (124.4 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 96/306 (31%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K V++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNVIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DTFRA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 341 (125.1 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 96/276 (34%), Positives = 147/276 (53%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLR---D-DILAGKLKSGPDIKDALKNSVLDLLT 155
+ +L E+ ALL +D R+ ++ E++R D D +AG L I+ A+ ++ L+
Sbjct: 29 NSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVD 88
Query: 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASD 215
G K + K VV+ VG+ G GKTT+ KLAY + K + DTFRA A D
Sbjct: 89 P-GVKPYQPIK-GKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYD 146
Query: 216 QLEIWAERTGCEIVVAEGEKAKASSVLSQ-AVKRGKEQGFDIVLCDTSGRLHTNYSLMEE 274
Q++ A + + E V++Q V K +GF++++ DTSGR SL EE
Sbjct: 147 QVKQNATKARIPFYGSYTEIDPV--VIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEE 204
Query: 275 LVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334
++A AV +P+ I+ V+D T G QA+ F D V I +I+TKLDG A+GG
Sbjct: 205 MLAVSNAV------SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGG 258
Query: 335 VVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+S V P+ F+G GE ++DL+PF + FV+ +
Sbjct: 259 ALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 334 (122.6 bits), Expect = 4.6e-30, P = 4.6e-30
Identities = 94/306 (30%), Positives = 160/306 (52%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
KI S ++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++
Sbjct: 9 KITSAL-RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENV 56
Query: 132 LAG----KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKT 184
+ ++ SG + + ++++V L K G K K +++ VG+ G GKT
Sbjct: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK-GKQNIIMFVGLQGSGKT 115
Query: 185 TSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244
T+ KLAY + +G K + DT+RA A DQL+ A + + E + S+
Sbjct: 116 TTCSKLAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEMDPVI-IASE 174
Query: 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304
V++ K + F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQA 228
Query: 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE 364
QA+ F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF +
Sbjct: 229 CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288
Query: 365 AFVNAI 370
F++ +
Sbjct: 289 PFISKL 294
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 89/277 (32%), Positives = 148/277 (53%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILA-GKLK--SGPD-IKDALKNSVLDLLT 155
D + +L L +D +T + + ++R+ ++ ++K S P I +K ++ +L
Sbjct: 28 DDFVRKLRLTFLEADVSLPVTKQFIANVRESVIGKSRVKGISTPAVIGSVVKEELVKILG 87
Query: 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK-ILMAAGDTFRAAAS 214
+ K E + K +++ VG+ G GKTT+ KLA ++ + K IL+++ D +R AA
Sbjct: 88 GESQKFEFPK-FGKQ-ILMFVGLQGVGKTTTAAKLALLIRKKFKKNILLSSVDIYRPAAR 145
Query: 215 DQLEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLME 273
QLEI A++ + V + EGE A + + +G+D+++ DT+GR + LME
Sbjct: 146 KQLEILAKQIDVDTVPIVEGEDVDAIVKKTLDLFNNSHEGYDVLMVDTAGRSQIDSVLME 205
Query: 274 ELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333
EL K + P+EI VLD G + L AR F+ +G TG+I+++LD AR G
Sbjct: 206 ELKVIKNRL------QPSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIVSRLDSDARVG 259
Query: 334 CVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
V+SV +G+P++F G GE V DL+ F E I
Sbjct: 260 SVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRI 296
>ASPGD|ASPL0000006202 [details] [associations]
symbol:AN6627 species:162425 "Emericella nidulans"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 EMBL:BN001301 SUPFAM:SSF64356
EMBL:AACD01000110 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 HOGENOM:HOG000201671
OrthoDB:EOG42Z7ZQ RefSeq:XP_664231.1 ProteinModelPortal:Q5AYK3
STRING:Q5AYK3 EnsemblFungi:CADANIAT00007408 GeneID:2870372
KEGG:ani:AN6627.2 OMA:THETGRR Uniprot:Q5AYK3
Length = 636
Score = 326 (119.8 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 97/302 (32%), Positives = 150/302 (49%)
Query: 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSV------ 150
AD +K L +E+ LL + +++ E ++ +++ K + + ALK+++
Sbjct: 339 ADLEKPLKAMEDHLLKKNVAREAAVRLCEGVKQELVGKKTGNFQSVDAALKSAMESSLRK 398
Query: 151 -------LDLLTKKGNKTEL-QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL 202
LDLL + T+ + G +P V+ IVGVNG GK+T+LGK+ Y L +IL
Sbjct: 399 ILTPTSSLDLLHEIDTVTKANKQGTSRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRIL 458
Query: 203 MAAGDTFRAAASDQLEIWA---------ERTGCEIVVAEGEKAKASSVLSQAVKRGKEQG 253
+AA DTFR+ A +QL + A E G + +G A++V AV+ G
Sbjct: 459 IAACDTFRSGAVEQLRVHARNLKELSARENVGAVELYEKGYGKDAANVAKDAVEYGAANN 518
Query: 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFN 313
FD+VL DT+GR H + LM L K PN+I +V + G + + QAR FN
Sbjct: 519 FDVVLIDTAGRRHNDQRLMSSLEKFAKFA------QPNKIFMVGEALVGTDSVMQARNFN 572
Query: 314 DVVG----ITGLILTKLDGSA-RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVN 368
G + G I++K D G +VS+V GIP+ F+GVG+ DL+ VN
Sbjct: 573 QAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDLRGLSVPWAVN 632
Query: 369 AI 370
+
Sbjct: 633 LL 634
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 320 (117.7 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 95/295 (32%), Positives = 150/295 (50%)
Query: 82 DNLAVIDELLLYWNLADTDKVLDELEEALLVSD--FG----PRITIKIVESLRDDILAGK 135
+N+ +IDE +L + L+E+ ALL SD FG + IK + +L DD+ AG
Sbjct: 18 NNVTIIDEKVL-------NDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNL-DDLAAGH 69
Query: 136 LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195
K I+ A+ + +L K KP+VV+ VG+ G GKTT+ K AY +
Sbjct: 70 NKR-LIIEQAIFKELCRMLDP--GKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQ 126
Query: 196 NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFD 255
+G K + DTFRA A DQL+ A + + E + + V R K++ D
Sbjct: 127 KKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVK-IAVEGVDRFKKEKCD 185
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+++ DTSGR SL EE+ + V + P+ ++ V+D + G QA F +
Sbjct: 186 LIIVDTSGRHKQAASLFEEM----RQVAEATE--PDLVIFVMDSSIGQAAFEQAEAFKET 239
Query: 316 VGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
V + +I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV+ +
Sbjct: 240 VSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 319 (117.4 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 83/278 (29%), Positives = 144/278 (51%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLL 154
N + D +L E+ AL+ SD R+ ++ ++++ I ++ G + + ++ +V + L
Sbjct: 24 NEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRYIQKTVFNEL 83
Query: 155 TKKGNK--TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA 212
K + T + V + VG+ G GKTT+ K+AY + +G K + DTFRA
Sbjct: 84 LKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAG 143
Query: 213 ASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLM 272
A DQL+ A + + E + ++ V++ ++GF+I++ DTSGR SL
Sbjct: 144 AFDQLKQNATKARIPFYGSYSE-IDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLF 202
Query: 273 EELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARG 332
EE++ AV P+ ++ V+D + G QAR F+ V + +I+TKLD A+G
Sbjct: 203 EEMLQVSNAV------TPDNVVFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKG 256
Query: 333 GCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
G +S V PV F+G GE ++D + F ++FV +
Sbjct: 257 GGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKL 294
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 321 (118.1 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 88/276 (31%), Positives = 141/276 (51%)
Query: 98 DT-DKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK 156
DT +++L E+ AL SD + I++ ++++D I ++ +G + + +K V D L +
Sbjct: 26 DTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQMAAGLNKRKIIKQVVFDELIR 85
Query: 157 KGNK-TELQLGYR-KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAAS 214
+ L + K +V+ VG+ G GKTTS+ KLAY K +G + DTFRA A
Sbjct: 86 LLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTKLAYFYKKKGFSTAIVCADTFRAGAF 145
Query: 215 DQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEE 274
DQ+ A + +E EK V V K+ G +I++ DTSGR + L EE
Sbjct: 146 DQVRHNAAKAKIHYYGSETEKDPVV-VARTGVDIFKKDGTEIIIVDTSGRHKQDSELFEE 204
Query: 275 LVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334
+ + AV P+ + V+D + G QA F V + +I+TK+DG++ GG
Sbjct: 205 MKQIETAV------KPDNCIFVMDSSIGQAAYEQATAFRSSVKVGSIIITKMDGNSMGGG 258
Query: 335 VVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+S V P+ F+G GE + DL+ FD FV+ +
Sbjct: 259 AISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKL 294
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 71/202 (35%), Positives = 111/202 (54%)
Query: 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228
K V++ VG+ G GKTT+ KLAY + +G K + DTFRA A DQL+ A +
Sbjct: 36 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 95
Query: 229 VVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNG 288
+ E + S+ V++ K + F+I++ DTSGR SL EE++ A+
Sbjct: 96 YGSYTEMDPVI-IASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------ 148
Query: 289 APNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKF 348
P+ I+ V+D + G QA+ F D V + +I+TKLDG A+GG +S V P+ F
Sbjct: 149 QPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIF 208
Query: 349 VGVGEGVEDLQPFDAEAFVNAI 370
+G GE ++D +PF + F++ +
Sbjct: 209 IGTGEHIDDFEPFKTQPFISKL 230
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 318 (117.0 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 80/273 (29%), Positives = 137/273 (50%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLD-LLTKKG 158
D +L + ALL +D R+ ++ +++ I L G + K ++ +V D L +
Sbjct: 29 DTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVD 88
Query: 159 NKTELQLGYR-KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 217
K + + +P+V+++VG+ G GKTT+ KLA + G K + A DTFRA A DQL
Sbjct: 89 PKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQL 148
Query: 218 EIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVA 277
+ A + + E + + V + K FD+++ DTSGR L E+V
Sbjct: 149 KQNAIKARVPYFGSYTETDPVV-IAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVE 207
Query: 278 CKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVS 337
A+ P++ +++LD + G Q++ F + +I+TKLDG A+GG +S
Sbjct: 208 ISDAI------RPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALS 261
Query: 338 VVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
V P+ F+G GE + DL+ F +F++ +
Sbjct: 262 AVAATKTPIVFIGTGEHINDLERFSPRSFISKL 294
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 315 (115.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 87/281 (30%), Positives = 144/281 (51%)
Query: 96 LADTDKVLDE-LEE---ALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVL 151
LAD D V++E L+E AL++SD I +++++I G + K ++ V+
Sbjct: 22 LAD-DVVIEECLKEIIRALILSDINVSYLKDIKSNIKNNIEKNIDIYGNNKKKLVQKYVV 80
Query: 152 DLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209
+ L K +G K K V+L VG+ G GKTT+ K A+ + +G K + DTF
Sbjct: 81 EELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTF 140
Query: 210 RAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNY 269
RA A DQL+ A + + E + + V + +D+++ D+SGR
Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSE-VDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQEN 199
Query: 270 SLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGS 329
L EE++ + ++ P EI+ V+D G + QA F + V + +I+TK+DG
Sbjct: 200 ELFEEMIQVENSI------QPEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGH 253
Query: 330 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
A+GG +S V G P+ F+G GE V D + F+A++FV+ +
Sbjct: 254 AKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRL 294
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 315 (115.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 87/281 (30%), Positives = 144/281 (51%)
Query: 96 LADTDKVLDE-LEE---ALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVL 151
LAD D V++E L+E AL++SD I +++++I G + K ++ V+
Sbjct: 22 LAD-DVVIEECLKEIIRALILSDINVSYLKDIKSNIKNNIEKNIDIYGNNKKKLVQKYVV 80
Query: 152 DLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209
+ L K +G K K V+L VG+ G GKTT+ K A+ + +G K + DTF
Sbjct: 81 EELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTF 140
Query: 210 RAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNY 269
RA A DQL+ A + + E + + V + +D+++ D+SGR
Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSE-VDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQEN 199
Query: 270 SLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGS 329
L EE++ + ++ P EI+ V+D G + QA F + V + +I+TK+DG
Sbjct: 200 ELFEEMIQVENSI------QPEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGH 253
Query: 330 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
A+GG +S V G P+ F+G GE V D + F+A++FV+ +
Sbjct: 254 AKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRL 294
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 309 (113.8 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 77/224 (34%), Positives = 115/224 (51%)
Query: 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206
K L TK N +++L V++ VG+ G GKTTS KLA K G K+ +
Sbjct: 95 KPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCA 154
Query: 207 DTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLH 266
DTFRA A DQL+ A + + E + + V++ K++ FDI++ DTSGR
Sbjct: 155 DTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVK-IAFEGVQKFKQEKFDIIIVDTSGRHR 213
Query: 267 TNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKL 326
L E+V +G+ V P + ++V+DG+ G QAR F + +ILTK+
Sbjct: 214 QEEQLFTEMVQ----IGEAVQ--PTQTIMVMDGSIGQAAESQARAFKESSNFGSIILTKM 267
Query: 327 DGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
DG A+GG +S V P+ F+G GE V DL+ F F++ +
Sbjct: 268 DGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311
>TAIR|locus:2118701 [details] [associations]
symbol:AT4G30600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005783 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003924
EMBL:AL161577 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
HOGENOM:HOG000201671 OMA:LILWSSC EMBL:AY065066 EMBL:AY133612
IPI:IPI00534083 PIR:A85358 RefSeq:NP_194789.1 UniGene:At.4581
HSSP:P83749 ProteinModelPortal:Q9M0A0 SMR:Q9M0A0 STRING:Q9M0A0
PaxDb:Q9M0A0 PRIDE:Q9M0A0 EnsemblPlants:AT4G30600.1 GeneID:829183
KEGG:ath:AT4G30600 TAIR:At4g30600 InParanoid:Q9M0A0
PhylomeDB:Q9M0A0 ProtClustDB:CLSN2685629 ArrayExpress:Q9M0A0
Genevestigator:Q9M0A0 Uniprot:Q9M0A0
Length = 634
Score = 308 (113.5 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 96/299 (32%), Positives = 151/299 (50%)
Query: 95 NLADTD--KVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKS----GPDIKDALKN 148
NL TD L L+E L+ + I K+ ES+ + KL S ++ A+++
Sbjct: 342 NLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMED 401
Query: 149 SVLDLLTKKGNKTELQLGY-----RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203
+++ +LT + + L+ + RKP VV+ VGVNG GK+T+L K+AY L+ ++M
Sbjct: 402 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMM 461
Query: 204 AAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSG 263
AA DTFR+ A +QL A R I EK A V +A++ G D+VL DT+G
Sbjct: 462 AACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAV-VAKEAIQEATRNGSDVVLVDTAG 520
Query: 264 RLHTNYSLMEELVACKKAVGKVVN-GAPNEILLVLDGTTGLNMLPQAREFNDVVG----- 317
R+ N LM +A+ K++N P+ +L V + G + + Q +FN +
Sbjct: 521 RMQDNEPLM-------RALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTS 573
Query: 318 -----ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+V G PV FVG G+ DL+ + +A V +
Sbjct: 574 GNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 302 (111.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 84/290 (28%), Positives = 144/290 (49%)
Query: 83 NLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDI 142
N+ +IDE L ++ L+E+ ALL SD + ++ +++ + L +G +
Sbjct: 19 NVTIIDEKAL-------NECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNK 71
Query: 143 KDALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK 200
+ ++ ++ L K K K +VV+ VG+ G GKTT+ K AY + +G K
Sbjct: 72 RRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYK 131
Query: 201 ILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCD 260
+ DTFRA A DQL+ A + + E + + V K++ D+++ D
Sbjct: 132 PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVK-IAVEGVDTFKKENCDLIIVD 190
Query: 261 TSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITG 320
TSGR SL EE+ + V + P+ ++ V+D + G QA+ F V +
Sbjct: 191 TSGRHKQEASLFEEM----RQVAEATK--PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Query: 321 LILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+I+TK+DG A+GG +S V PV F+G GE +++ + FD + FV+ +
Sbjct: 245 VIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
>POMBASE|SPBC3B9.03 [details] [associations]
symbol:SPBC3B9.03 "signal recognition particle receptor
alpha subunit Srp101 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003924 "GTPase activity" evidence=ISM] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005525
"GTP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPBC3B9.03
GO:GO:0005525 GO:GO:0005829 GO:GO:0005634 EMBL:CU329671
GO:GO:0003924 GenomeReviews:CU329671_GR SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 HSSP:Q6MTB9 HOGENOM:HOG000201671
PIR:T40342 RefSeq:NP_596660.1 ProteinModelPortal:O43032
STRING:O43032 EnsemblFungi:SPBC3B9.03.1 GeneID:2540909
KEGG:spo:SPBC3B9.03 OMA:PVEANND OrthoDB:EOG42Z7ZQ NextBio:20802024
Uniprot:O43032
Length = 547
Score = 295 (108.9 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 88/297 (29%), Positives = 152/297 (51%)
Query: 93 YWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLD 152
Y D +L +++E L + I +++ ES++ ++ K+ S +K+ + + D
Sbjct: 255 YLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRD 314
Query: 153 LLTK-KGNKTELQL-----GYRK----PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL 202
LT+ T L L RK P + ++GVNG GK+T+L K+AY L + +IL
Sbjct: 315 RLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRIL 374
Query: 203 MAAGDTFRAAASDQLEIWAERT----GCEI-VVAEGEKAKASSVLSQAVKRGKEQGFDIV 257
+AA DTFR+ A +QL + + G I + A+G +S V+ AV+ K+ FD++
Sbjct: 375 VAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVI 434
Query: 258 LCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVV- 316
L DT+GR H + LM L KA K+ ++I V + G + L QA+ F +
Sbjct: 435 LIDTAGRRHNDQRLMGSLEKFTKAT-KL-----DKIFQVAEALVGTDSLAQAKHFQASLY 488
Query: 317 --GITGLILTKLDGSAR-GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+ G I++K+D + G +V +V + +P+ FVG+G+ DL+ + V+ +
Sbjct: 489 HRPLDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVVDQL 545
>DICTYBASE|DDB_G0277377 [details] [associations]
symbol:srpR "signal recognition particle receptor
alpha subunit" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA;ISS] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 dictyBase:DDB_G0277377 GO:GO:0005525
GO:GO:0005789 GO:GO:0003924 GenomeReviews:CM000151_GR
EMBL:AAFI02000019 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005785 GO:GO:0005047
HSSP:P08240 RefSeq:XP_642799.1 ProteinModelPortal:Q54ZR7
STRING:Q54ZR7 EnsemblProtists:DDB0252680 GeneID:8620992
KEGG:ddi:DDB_G0277377 OMA:LILWSSC ProtClustDB:CLSZ2846855
Uniprot:Q54ZR7
Length = 615
Score = 288 (106.4 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 88/295 (29%), Positives = 152/295 (51%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKS--GPD--IKDALKNSVLDL 153
D + +L + + L + P + KIV+S+ + KL + G +K +++++ +
Sbjct: 327 DLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRI 386
Query: 154 LTKKGN---KTELQ-LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209
LT K N E+Q + ++P ++ GVNG GK+T+L K+ Y L G K ++AA DTF
Sbjct: 387 LTPKRNIDILREVQAVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTF 446
Query: 210 RAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNY 269
R+ A +QL+ A+R + G A+SV A+ K+ G+D+VL DT+GR+ N
Sbjct: 447 RSGAIEQLKTHADRLNVHLF-ERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNE 505
Query: 270 SLMEELVACKKAVGKVVNGAPNEILL----VLDGTTGLNMLPQAREFNDVVG-------- 317
LM KA+ K+VN +++L L G G++ L + + ++
Sbjct: 506 PLM-------KALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIR 558
Query: 318 -ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G+ILTK D + G +S+V G P+ F+G G+ DL+ + ++ V ++
Sbjct: 559 TIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVVKSL 613
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 284 (105.0 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 84/303 (27%), Positives = 147/303 (48%)
Query: 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDI 131
+I S K +N+ +IDE L + L+E+ ALL SD + ++ +++ +
Sbjct: 9 RIMSAIQKM-NNVTIIDEKAL-------NDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 132 LAGKLKSGPDIKDALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGG--GKTTSL 187
L +G + + ++ ++ L K K+ KP+VV+ VG+ G K +
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 188 GKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVK 247
+ ++ +G K + DTFRA A DQL+ A ++ + + + V
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYY-GSYTGSDPVKIAVEGVD 179
Query: 248 RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307
R K++ D+++ DTSGR SL EE+ +A P+ ++ V+D + G
Sbjct: 180 RFKKENCDLIIVDTSGRHKQQASLFEEMRQISEAT------KPDLVIFVMDSSIGQTAFE 233
Query: 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
QAR F V + +I+TK+DG A+GG +S V PV F+G GE +++ + FDA+ FV
Sbjct: 234 QARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFV 293
Query: 368 NAI 370
+ +
Sbjct: 294 SRL 296
>WB|WBGene00009521 [details] [associations]
symbol:F38A1.8 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0018996 GO:GO:0003924 GO:GO:0048477
SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:FO080472 EMBL:FO081324 EMBL:FO081776
RefSeq:NP_741303.2 ProteinModelPortal:G4RYA5 SMR:G4RYA5
EnsemblMetazoa:F38A1.8 GeneID:185438 KEGG:cel:CELE_F38A1.8
CTD:185438 WormBase:F38A1.8 NextBio:928280 Uniprot:G4RYA5
Length = 625
Score = 285 (105.4 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 87/301 (28%), Positives = 152/301 (50%)
Query: 98 DTDKVLDELEEALLV----SDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDL 153
D + +++++ E L++ S+ +I +V L ++ + ++K A++ S++ L
Sbjct: 331 DLNPLIEKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQL 390
Query: 154 LTKKGNKTELQ--LGYRK---PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208
LT K L+ + ++ P V++ GVNG GK+T+L K+ + L ++L+AAGDT
Sbjct: 391 LTPKHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDT 450
Query: 209 FRAAASDQLEIWAE-----RTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSG 263
FRA A +QL A ++ +G + + + A+K+ EQ FD+VL DT+G
Sbjct: 451 FRAGAVEQLRTHARYLNDLHKNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAG 510
Query: 264 RLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG------ 317
R+ N LM EL K + VN P+ +L V + G + Q +FN+ +
Sbjct: 511 RMQDNEPLMRELA---KLIR--VN-EPDLVLFVGEALVGNEAVDQLVKFNEALANHASPG 564
Query: 318 -----ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
I G++LTK D + G VS+ G P+ FVG G+ DL+ + A V+++
Sbjct: 565 QKPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLL 624
Query: 372 S 372
+
Sbjct: 625 N 625
>CGD|CAL0003010 [details] [associations]
symbol:orf19.3952 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0045047 "protein targeting to ER" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 CGD:CAL0003010 GO:GO:0005525
GO:GO:0003924 EMBL:AACQ01000012 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
RefSeq:XP_721861.1 ProteinModelPortal:Q5AK68 STRING:Q5AK68
GeneID:3636513 KEGG:cal:CaO19.3952 Uniprot:Q5AK68
Length = 535
Score = 280 (103.6 bits), Expect = 7.3e-24, P = 7.3e-24
Identities = 87/298 (29%), Positives = 141/298 (47%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
+ D+V + E L+ + P I I++ ++ + A K + K AL + + +LT
Sbjct: 243 NVDEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVYKQALTDELTKILTPN 302
Query: 158 GN-------KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210
+ K +L R P V+ +VGVNG GK+T+L KLA+ +L+ A DTFR
Sbjct: 303 VSTDLLHDIKRNAELNTR-PYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFR 361
Query: 211 AAASDQLEIWAER----------TGCEIVVAEGEKAKASSVLS---QAVKRGKEQGFDIV 257
+ A +QL++ T I + E V+ QAV+ +E FDIV
Sbjct: 362 SGAVEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIV 421
Query: 258 LCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG 317
L DT+GR H+N LM L K G N PN+I++V + G + + QA FN G
Sbjct: 422 LIDTAGRTHSNAKLMAPL----KKFGDAAN--PNKIIMVGEALVGTDSVEQATNFNKAFG 475
Query: 318 ----ITGLILTKLDGSAR-GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
+ I++K+D G ++++V +P+ FVG G+ D++ + V +
Sbjct: 476 NKRTLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVKQVVEML 533
>SGD|S000002700 [details] [associations]
symbol:SRP101 "Signal recognition particle (SRP) receptor
alpha subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005525
"GTP binding" evidence=IEA;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA;IC;TAS]
[GO:0005047 "signal recognition particle binding" evidence=ISS;IMP]
[GO:0005785 "signal recognition particle receptor complex"
evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0045047 "protein targeting to ER"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SGD:S000002700 GO:GO:0005525
EMBL:BK006938 GO:GO:0017111 SUPFAM:SSF64356 EMBL:U51031
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 RefSeq:NP_010578.3
GeneID:851886 KEGG:sce:YDR292C KO:K13431 RefSeq:NP_010582.3
GeneID:851890 KEGG:sce:YDR296W GO:GO:0005785 TCDB:3.A.5.8.1
GO:GO:0005047 PDB:1NRJ PDBsum:1NRJ HOGENOM:HOG000201671
GeneTree:ENSGT00550000074936 OrthoDB:EOG42Z7ZQ EMBL:M77274
PIR:S70121 ProteinModelPortal:P32916 SMR:P32916 DIP:DIP-1672N
IntAct:P32916 MINT:MINT-364995 STRING:P32916 PaxDb:P32916
PeptideAtlas:P32916 EnsemblFungi:YDR292C CYGD:YDR292c OMA:HVENLAQ
EvolutionaryTrace:P32916 NextBio:969862 Genevestigator:P32916
GermOnline:YDR292C InterPro:IPR015284 Pfam:PF09201 Uniprot:P32916
Length = 621
Score = 183 (69.5 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 47/139 (33%), Positives = 75/139 (53%)
Query: 239 SSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLD 298
+ + QA+K ++Q FDIVL DT+GR H + +LM L K+ P++I++V +
Sbjct: 489 TKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPL----KSFAD--QAKPDKIIMVGE 542
Query: 299 GTTGLNMLPQAREFNDVVG----ITGLILTKLDGSARG-GCVVSVVDELGIPVKFVGVGE 353
G + + QA+ FND G + I++K D G +V++V GIP+ FVGVG+
Sbjct: 543 ALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQ 602
Query: 354 GVEDLQPFDAEAFVNAIFS 372
DL+ + VN + S
Sbjct: 603 TYTDLRTLSVKWAVNTLMS 621
Score = 148 (57.2 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 42/143 (29%), Positives = 70/143 (48%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLL 154
N +D VL++L + L+ + P + + + D++ K + +++ + S+ L
Sbjct: 307 NESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKAL 366
Query: 155 TK---KGNKTEL------------QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA 199
T+ G +L + G P V IVGVNG GK+T+L KLA+ L
Sbjct: 367 TQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNF 426
Query: 200 KILMAAGDTFRAAASDQLEIWAE 222
K+L+ A DTFR+ A +QL + E
Sbjct: 427 KVLIVACDTFRSGAVEQLRVHVE 449
Score = 39 (18.8 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 127 LRDDILAGKLKSGPDIKDALKNSVLDLLTK 156
L+ +L K + D+K L+ L+TK
Sbjct: 296 LQKHVLGNKTINESDLKSVLEKLTQQLITK 325
>UNIPROTKB|F1NXV4 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
OMA:LILWSSC GeneTree:ENSGT00550000074936 EMBL:AADN02042027
IPI:IPI00593518 Ensembl:ENSGALT00000001579 Uniprot:F1NXV4
Length = 644
Score = 239 (89.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 80/262 (30%), Positives = 128/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D D VL+++++ L+ + I +++ ES+ L GK+ +K AL+ +++
Sbjct: 343 DMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKK-LEGKVMGTFTTVTSTVKQALQEALVQ 401
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +R+P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 402 ILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAACD 461
Query: 208 TFRAAASDQLEIWAERT---------GCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL R G +V EK A+ + +A+ + QGFD
Sbjct: 462 TFRAGAVEQLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQGFD 521
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN AP+ +L V + G + Q +FN
Sbjct: 522 VVLVDTAGRMQDNAPLMTALA---KLIA--VN-APDLVLFVGEALVGNEAVDQLVKFNKA 575
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 576 LADHSMAQTPRLIDGIVLTKFD 597
Score = 153 (58.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 47/150 (31%), Positives = 74/150 (49%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+ + QGFD+VL DT+GR+ N LM L K + VN AP+
Sbjct: 498 KGYGKDAAGIAMEAISYARNQGFDVVLVDTAGRMQDNAPLMTALA---KLIA--VN-APD 551
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 552 LVLFVGEALVGNEAVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTY 611
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
P+ FVG G+ DL+ +A+A V A+
Sbjct: 612 ITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 641
Score = 40 (19.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 61 LDNQFELVFVVGFQKILTLTYVDKLIDDV 89
>ZFIN|ZDB-GENE-030219-11 [details] [associations]
symbol:srpr "signal recognition particle receptor
(docking protein)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
ZFIN:ZDB-GENE-030219-11 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
CTD:6734 GeneTree:ENSGT00550000074936 EMBL:CU469519 IPI:IPI00799782
RefSeq:XP_697518.3 UniGene:Dr.79180 Ensembl:ENSDART00000086823
GeneID:569063 KEGG:dre:569063 NextBio:20889487 Uniprot:E7EZW6
Length = 650
Score = 236 (88.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 81/262 (30%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKS-----GPDIKDALKNSVLD 152
D + VLD++++ L+ + I ++ +S+ L GK+ +K AL++S++
Sbjct: 349 DMEPVLDKMKDHLIAKNVAAEIASQLCDSVAKK-LEGKVMGTFTTVASTVKQALQDSLVQ 407
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L K L+ RKP V+ GVNG GK+T+L K++Y L G +L+AA D
Sbjct: 408 ILQPKRRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACD 467
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G + V EK A+ + +A+ + QGFD
Sbjct: 468 TFRAGAVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFD 527
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 528 VVLIDTAGRMQDNAPLMTALA---KLIA--VN-TPDLVLFVGEALVGNEAVDQLVKFNRA 581
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 582 LADHSKSDKPRLIDGIVLTKFD 603
Score = 158 (60.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 47/150 (31%), Positives = 74/150 (49%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+ + QGFD+VL DT+GR+ N LM L K + VN P+
Sbjct: 504 KGYGKDAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMTALA---KLIA--VN-TPD 557
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 558 LVLFVGEALVGNEAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTIDDKVGAAISMTY 617
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
G P+ FVG G+ DL+ +A A V+A+
Sbjct: 618 ITGQPIVFVGTGQTYSDLRSLNARAVVSAL 647
Score = 41 (19.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 54 FFTRLGRLIKEKAKSDVEKIFS-GFSKTRDNLAVIDELLLYWNLADTDKVLDELEE 108
FFT +K K ++ E +F GF L +D+ + L D+ +ELE+
Sbjct: 48 FFTHNTLSLKYKLDNEFELVFVVGFQANL-MLKYVDKFIDDVQLHFRDRYKNELEQ 102
Score = 38 (18.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F + +K V+ DD+
Sbjct: 60 LDNEFELVFVVGFQANLMLKYVDKFIDDV 88
>UNIPROTKB|F1MNJ2 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 IPI:IPI00695733
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:DAAA02063109
Ensembl:ENSBTAT00000018762 Uniprot:F1MNJ2
Length = 598
Score = 233 (87.1 bits), Expect = 7.1e-17, P = 7.1e-17
Identities = 79/262 (30%), Positives = 128/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 338 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 396
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 397 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 456
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G +V EK A+ + +A+ + QGFD
Sbjct: 457 TFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 516
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 517 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 570
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 571 LADHSMAQTPRLIDGIVLTKFD 592
>UNIPROTKB|Q3MHE8 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
EMBL:BC105264 IPI:IPI00695733 RefSeq:NP_001068590.1 UniGene:Bt.5518
HSSP:P08240 ProteinModelPortal:Q3MHE8 SMR:Q3MHE8 STRING:Q3MHE8
PRIDE:Q3MHE8 GeneID:281504 KEGG:bta:281504 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 InParanoid:Q3MHE8
OrthoDB:EOG4W0XCP NextBio:20805473 Uniprot:Q3MHE8
Length = 639
Score = 233 (87.1 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 79/262 (30%), Positives = 128/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 338 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 396
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 397 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 456
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G +V EK A+ + +A+ + QGFD
Sbjct: 457 TFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 516
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 517 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 570
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 571 LADHSMAQTPRLIDGIVLTKFD 592
Score = 147 (56.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 52/174 (29%), Positives = 82/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 470 TRRLSALHPPEKHGGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 528
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 529 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 582
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 583 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 636
Score = 40 (19.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>UNIPROTKB|F1S754 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:CU466237 EMBL:FP102836 EMBL:GACC01000039
Ensembl:ENSSSCT00000016593 Uniprot:F1S754
Length = 638
Score = 231 (86.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 79/262 (30%), Positives = 126/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ L GK+ +K AL+ S++
Sbjct: 337 DMESVLDKMRDHLIAKNVAADIAVQLCESVASK-LEGKVMGTFSTVTSTVKQALQESLVQ 395
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 396 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 455
Query: 208 TFRAAASDQLEIWAERT---------GCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL R G +V EK A+ + +A+ + QGFD
Sbjct: 456 TFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 515
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 516 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 569
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 570 LADHSMAQTPRLIDGIVLTKFD 591
Score = 147 (56.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 52/174 (29%), Positives = 82/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 469 TRRLSALHPPENHGGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 527
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 528 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 581
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 635
Score = 40 (19.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>UNIPROTKB|J9NTJ9 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 Ensembl:ENSCAFT00000045313
Uniprot:J9NTJ9
Length = 637
Score = 230 (86.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 78/262 (29%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 336 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 394
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 395 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 454
Query: 208 TFRAAASDQLEIWAER----------TGCEIV--VAEGEKAKASSVLSQAVKRGKEQGFD 255
TFRA A +QL R G +V +G A+ + +A+ + QGFD
Sbjct: 455 TFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 514
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 515 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 568
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 569 LADHSMAQTPRLIDGIVLTKFD 590
Score = 151 (58.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E A RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 468 TRRLSALHPPEKHAGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 526
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 527 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 580
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 581 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 634
Score = 40 (19.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 57 LDNQFELVFVVGFQKILTLTYVDKLIDDV 85
>UNIPROTKB|F1PLH3 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 RefSeq:XP_546411.3
Ensembl:ENSCAFT00000016629 GeneID:489293 KEGG:cfa:489293
Uniprot:F1PLH3
Length = 638
Score = 230 (86.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 78/262 (29%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 337 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 395
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 396 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 455
Query: 208 TFRAAASDQLEIWAER----------TGCEIV--VAEGEKAKASSVLSQAVKRGKEQGFD 255
TFRA A +QL R G +V +G A+ + +A+ + QGFD
Sbjct: 456 TFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 515
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 516 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 569
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 570 LADHSMAQTPRLIDGIVLTKFD 591
Score = 151 (58.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E A RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 469 TRRLSALHPPEKHAGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 527
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 528 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 581
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 635
Score = 40 (19.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>MGI|MGI:1914648 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005785 "signal recognition particle
receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 MGI:MGI:1914648 GO:GO:0005525 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:AK004967 EMBL:AK038017 EMBL:BC012512 EMBL:BC021839
IPI:IPI00119695 RefSeq:NP_080406.1 UniGene:Mm.284688
ProteinModelPortal:Q9DBG7 SMR:Q9DBG7 STRING:Q9DBG7
PhosphoSite:Q9DBG7 PaxDb:Q9DBG7 PRIDE:Q9DBG7
Ensembl:ENSMUST00000034541 GeneID:67398 KEGG:mmu:67398
UCSC:uc009osy.1 InParanoid:Q9DBG7 NextBio:324466 Bgee:Q9DBG7
Genevestigator:Q9DBG7 GermOnline:ENSMUSG00000032042 Uniprot:Q9DBG7
Length = 636
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 79/262 (30%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 335 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 393
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ ++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 394 ILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 453
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G +V EK A+ + +A+ + QGFD
Sbjct: 454 TFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 513
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 514 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 567
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 568 LADHSMAQTPRLIDGIVLTKFD 589
Score = 146 (56.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 46/150 (30%), Positives = 73/150 (48%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+ + QGFD+VL DT+GR+ N LM L K + VN P+
Sbjct: 490 KGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPD 543
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 544 LVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTY 603
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
P+ FVG G+ DL+ +A+A V A+
Sbjct: 604 ITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 633
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>RGD|1311504 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10116 "Rattus norvegicus" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:1311504 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:BC105782 IPI:IPI00362579 RefSeq:NP_001029322.1
UniGene:Rn.18349 SMR:Q3KRC3 STRING:Q3KRC3
Ensembl:ENSRNOT00000015177 GeneID:315548 KEGG:rno:315548
UCSC:RGD:1311504 InParanoid:Q3KRC3 NextBio:669402
Genevestigator:Q3KRC3 Uniprot:Q3KRC3
Length = 636
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 79/262 (30%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 335 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 393
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ ++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 394 ILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 453
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G +V EK A+ + +A+ + QGFD
Sbjct: 454 TFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 513
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 514 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 567
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 568 LADHSMAQTPRLIDGIVLTKFD 589
Score = 146 (56.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 46/150 (30%), Positives = 73/150 (48%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+ + QGFD+VL DT+GR+ N LM L K + VN P+
Sbjct: 490 KGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPD 543
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 544 LVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTY 603
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
P+ FVG G+ DL+ +A+A V A+
Sbjct: 604 ITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 633
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>UNIPROTKB|P08240 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0006613
"cotranslational protein targeting to membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0006987 "activation of signaling protein activity involved in
unfolded protein response" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0016021 Reactome:REACT_116125 GO:GO:0006987 EMBL:CH471065
GO:GO:0006412 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
PDB:2GO5 PDBsum:2GO5 PDB:2FH5 PDBsum:2FH5 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X06272 EMBL:AK312377 EMBL:AP001318 EMBL:BC001162 EMBL:BC009110
EMBL:BC013583 IPI:IPI00385267 PIR:A29440 RefSeq:NP_001171313.1
RefSeq:NP_003130.2 UniGene:Hs.368376 ProteinModelPortal:P08240
SMR:P08240 IntAct:P08240 MINT:MINT-1404634 STRING:P08240
PhosphoSite:P08240 DMDM:20455516 PaxDb:P08240 PRIDE:P08240
DNASU:6734 Ensembl:ENST00000332118 GeneID:6734 KEGG:hsa:6734
UCSC:uc001qdh.3 GeneCards:GC11M126132 HGNC:HGNC:11307 MIM:182180
neXtProt:NX_P08240 PharmGKB:PA36131 InParanoid:P08240 OMA:KEGSDGP
ChiTaRS:SRPR EvolutionaryTrace:P08240 GenomeRNAi:6734 NextBio:26272
ArrayExpress:P08240 Bgee:P08240 CleanEx:HS_SRPR
Genevestigator:P08240 GermOnline:ENSG00000182934 Uniprot:P08240
Length = 638
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 79/262 (30%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 337 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 395
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ ++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 396 ILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 455
Query: 208 TFRAAASDQLEIWA---------ERTGCEIVVAEGEKA---KASSVLSQAVKRGKEQGFD 255
TFRA A +QL E+ G +V EK A+ + +A+ + QGFD
Sbjct: 456 TFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 515
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 516 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 569
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 570 LADHSMAQTPRLIDGIVLTKFD 591
Score = 147 (56.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 52/174 (29%), Positives = 82/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 469 TRRLSALHPPEKHGGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 527
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 528 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 581
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 635
Score = 40 (19.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>UNIPROTKB|J9P788 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:AAEX03003376
EMBL:AAEX03003378 EMBL:AAEX03003377 EMBL:AAEX03003379
Ensembl:ENSCAFT00000047935 Uniprot:J9P788
Length = 773
Score = 230 (86.0 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 78/262 (29%), Positives = 127/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 472 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 530
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 531 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 590
Query: 208 TFRAAASDQLEIWAER----------TGCEIV--VAEGEKAKASSVLSQAVKRGKEQGFD 255
TFRA A +QL R G +V +G A+ + +A+ + QGFD
Sbjct: 591 TFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 650
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 651 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 704
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 705 LADHSMAQTPRLIDGIVLTKFD 726
Score = 151 (58.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 208 TFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT 267
T R +A E A RT ++ +G A+ + +A+ + QGFD+VL DT+GR+
Sbjct: 604 TRRLSALHPPEKHAGRTMVQLF-EKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 662
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG---------- 317
N LM L K + VN P+ +L V + G + Q +FN +
Sbjct: 663 NAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRL 716
Query: 318 ITGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
I G++LTK D + G +S+ P+ FVG G+ DL+ +A+A V A+
Sbjct: 717 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 770
Score = 40 (19.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 193 LDNQFELVFVVGFQKILTLTYVDKLIDDV 221
>UNIPROTKB|P06625 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005789 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 Reactome:REACT_146484 GO:GO:0005047
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X03184 PIR:A24570 ProteinModelPortal:P06625 SMR:P06625
STRING:P06625 PRIDE:P06625 InParanoid:P06625 Uniprot:P06625
Length = 638
Score = 222 (83.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 76/262 (29%), Positives = 126/262 (48%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-----PDIKDALKNSVLD 152
D + VLD++ + L+ + I +++ ES+ + L GK+ +K AL+ S++
Sbjct: 337 DMESVLDKMRDHLIAKNVAADIAVQLCESVANK-LEGKVMGTFSTVTSTVKQALQESLVQ 395
Query: 153 LLTKKGNKTELQ-----LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+L + L+ +++P VV GVNG GK+T+L K+++ L G +L+AA D
Sbjct: 396 ILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD 455
Query: 208 TFRAAASDQLEIWAER----------TGCEIV--VAEGEKAKASSVLSQAVKRGKEQGFD 255
TFRA A + + R G +V +G A+ + +A+ + QGFD
Sbjct: 456 TFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFD 515
Query: 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDV 315
+VL DT+GR+ N LM L K + VN P+ +L V + G + Q +FN
Sbjct: 516 VVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPDLVLFVGEALVGNEAVDQLVKFNRA 569
Query: 316 VG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 570 LADHSMAQTPRLIDGIVLTKFD 591
Score = 146 (56.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 46/150 (30%), Positives = 73/150 (48%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+ + QGFD+VL DT+GR+ N LM L K + VN P+
Sbjct: 492 KGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA---KLI--TVN-TPD 545
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 546 LVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTY 605
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
P+ FVG G+ DL+ +A+A V A+
Sbjct: 606 ITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 635
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDI 131
LD E + V F +T+ V+ L DD+
Sbjct: 58 LDNQFELVFVVGFQKILTLTYVDKLIDDV 86
>UNIPROTKB|Q485K6 [details] [associations]
symbol:flhF "Flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_268259.1 ProteinModelPortal:Q485K6 STRING:Q485K6
GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241 OMA:EPRQAWR
BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 205 (77.2 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 83/309 (26%), Positives = 150/309 (48%)
Query: 65 KAKSDVEKIFS-GFSKTRDNLAVIDELLLYW--NLADTDKVLDELEEALLVSDFGPRITI 121
K +D ++ S F+K + +A I LL + L D + + A+LV+ + +
Sbjct: 194 KGMNDDAQVSSQDFAKMQQEMASIRSLLEHQVSGLMWQDMAQKDPQRAVLVNRL---LAL 250
Query: 122 KIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGG 181
+ E + D I AG + K+A + L++++ N T+ + + VV +VG G
Sbjct: 251 GLNEQIADQI-AGYVPEQSHEKEAWLQAT-QLISQQINTTQNDI-INRGGVVALVGPTGV 307
Query: 182 GKTTSLGKLAYRLKN-EGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAS 239
GKTT++ KLA G+ ++ + + DTFR A +QL + + GC++ +A+ ++A
Sbjct: 308 GKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIGCQVSLAKD--SQAL 365
Query: 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG 299
+L Q + K ++L DT+G + L E+L A V N ++L +
Sbjct: 366 DILLQQYSKKK-----LILIDTAGMGQRDMRLAEQLTAL---VSNARVRIRNYLVLAANT 417
Query: 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDL 358
G+ M F V ++G I TKLD S G +++ + G+P+ ++ G+ V ED+
Sbjct: 418 QQGV-MQENVDRFKKVP-LSGCIYTKLDESISIGEIITTSIQNGLPIGYLTDGQRVPEDI 475
Query: 359 QPFDAEAFV 367
+ +AE V
Sbjct: 476 KVANAEKLV 484
>TIGR_CMR|CPS_1517 [details] [associations]
symbol:CPS_1517 "flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 GO:GO:0003924 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009296 GO:GO:0001539 GO:GO:0006614
eggNOG:COG1419 KO:K02404 HOGENOM:HOG000254735 ProtClustDB:PRK05703
TIGRFAMs:TIGR03499 RefSeq:YP_268259.1 ProteinModelPortal:Q485K6
STRING:Q485K6 GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241
OMA:EPRQAWR BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 205 (77.2 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 83/309 (26%), Positives = 150/309 (48%)
Query: 65 KAKSDVEKIFS-GFSKTRDNLAVIDELLLYW--NLADTDKVLDELEEALLVSDFGPRITI 121
K +D ++ S F+K + +A I LL + L D + + A+LV+ + +
Sbjct: 194 KGMNDDAQVSSQDFAKMQQEMASIRSLLEHQVSGLMWQDMAQKDPQRAVLVNRL---LAL 250
Query: 122 KIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGG 181
+ E + D I AG + K+A + L++++ N T+ + + VV +VG G
Sbjct: 251 GLNEQIADQI-AGYVPEQSHEKEAWLQAT-QLISQQINTTQNDI-INRGGVVALVGPTGV 307
Query: 182 GKTTSLGKLAYRLKN-EGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAS 239
GKTT++ KLA G+ ++ + + DTFR A +QL + + GC++ +A+ ++A
Sbjct: 308 GKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIGCQVSLAKD--SQAL 365
Query: 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG 299
+L Q + K ++L DT+G + L E+L A V N ++L +
Sbjct: 366 DILLQQYSKKK-----LILIDTAGMGQRDMRLAEQLTAL---VSNARVRIRNYLVLAANT 417
Query: 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDL 358
G+ M F V ++G I TKLD S G +++ + G+P+ ++ G+ V ED+
Sbjct: 418 QQGV-MQENVDRFKKVP-LSGCIYTKLDESISIGEIITTSIQNGLPIGYLTDGQRVPEDI 475
Query: 359 QPFDAEAFV 367
+ +AE V
Sbjct: 476 KVANAEKLV 484
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 200 (75.5 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 75/264 (28%), Positives = 123/264 (46%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLR---DDILAGKLKS-GPDIKDALKNSV 150
+LAD L+++ + L+ + I K+ +S+ D G S +K+AL S+
Sbjct: 311 SLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESL 370
Query: 151 LDLLTKKGN----KTELQLGYR-KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205
+ +L+ K + L+ +P ++ GVNG GK+T+L K+ + L +L+AA
Sbjct: 371 VRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAA 430
Query: 206 GDTFRAAASDQLEIW----------AERTGCEIV--VAEGEKAKASSVLSQAVKRGKEQG 253
DTFRA A +QL A+ G +V +G A+ + +A+K +
Sbjct: 431 CDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTR 490
Query: 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFN 313
D+VL DT+GR+ N LM L K + KV N P+ +L V + G + Q +FN
Sbjct: 491 VDVVLVDTAGRMQDNEPLMRSL---SKLI-KVNN--PDLVLFVGEALVGNEAVDQLVKFN 544
Query: 314 DVVG----------ITGLILTKLD 327
+ I G++LTK D
Sbjct: 545 QSLADYSSNENPHIIDGIVLTKFD 568
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 45/150 (30%), Positives = 72/150 (48%)
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+G A+ + +A+K + D+VL DT+GR+ N LM L K + KV N P+
Sbjct: 469 KGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSL---SKLI-KVNN--PD 522
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVG----------ITGLILTKLDG-SARGGCVVSVVD 340
+L V + G + Q +FN + I G++LTK D + G +S+
Sbjct: 523 LVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTY 582
Query: 341 ELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
G P+ FVG G+ DL+ + A VN++
Sbjct: 583 ITGQPIVFVGTGQTYADLKAINVNAVVNSL 612
>UNIPROTKB|Q8ECD1 [details] [associations]
symbol:flhF "Flagellar polar localization control system
flagellar assembly determinant GTPase FlhF" species:211586
"Shewanella oneidensis MR-1" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 189 (71.6 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 88/310 (28%), Positives = 145/310 (46%)
Query: 63 KEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDEL-EEALLVSDFGPRITI 121
++ A S +K + + D A+ DEL NL T +V + E + G +
Sbjct: 133 RDIANSFDKKPQTSQKQNADLEAMRDELASLRNLL-THQVSALMTEHKKRIDPVGAMLES 191
Query: 122 KIVESLRDDILAGKLKS-----GP-DIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLI 175
K++E+ +A KL + P ++ AL S+ ++L +G+ Q G VV +
Sbjct: 192 KLLEAEFSPAVASKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGG-----VVAL 246
Query: 176 VGVNGGGKTTSLGKLAYRLK-NEGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233
VG G GKTTSL KLA R + GA ++ + D +R A +QL + + GC + A
Sbjct: 247 VGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAH- 305
Query: 234 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEI 293
+ A+ +L Q R +VL DT+G + L ++L A ++ P
Sbjct: 306 DLAELEQILYQFRNR------KLVLIDTAGMGQRDMRLYQQLDNLT-ANSRI----PIRS 354
Query: 294 LLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGE 353
LVL T +L A + ++G++LTKLD S +SV+ + G+P+ +V G+
Sbjct: 355 YLVLSATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQ 414
Query: 354 GV-EDLQPFD 362
V ED++ D
Sbjct: 415 RVPEDMKVAD 424
>TIGR_CMR|SO_3212 [details] [associations]
symbol:SO_3212 "flagellar biosynthetic protein FlhF"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 189 (71.6 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 88/310 (28%), Positives = 145/310 (46%)
Query: 63 KEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDEL-EEALLVSDFGPRITI 121
++ A S +K + + D A+ DEL NL T +V + E + G +
Sbjct: 133 RDIANSFDKKPQTSQKQNADLEAMRDELASLRNLL-THQVSALMTEHKKRIDPVGAMLES 191
Query: 122 KIVESLRDDILAGKLKS-----GP-DIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLI 175
K++E+ +A KL + P ++ AL S+ ++L +G+ Q G VV +
Sbjct: 192 KLLEAEFSPAVASKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGG-----VVAL 246
Query: 176 VGVNGGGKTTSLGKLAYRLK-NEGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233
VG G GKTTSL KLA R + GA ++ + D +R A +QL + + GC + A
Sbjct: 247 VGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAH- 305
Query: 234 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEI 293
+ A+ +L Q R +VL DT+G + L ++L A ++ P
Sbjct: 306 DLAELEQILYQFRNR------KLVLIDTAGMGQRDMRLYQQLDNLT-ANSRI----PIRS 354
Query: 294 LLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGE 353
LVL T +L A + ++G++LTKLD S +SV+ + G+P+ +V G+
Sbjct: 355 YLVLSATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQ 414
Query: 354 GV-EDLQPFD 362
V ED++ D
Sbjct: 415 RVPEDMKVAD 424
>UNIPROTKB|Q9KQD2 [details] [associations]
symbol:VC_2068 "Flagellar biosynthetic protein FlhF,
putative" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 59/194 (30%), Positives = 98/194 (50%)
Query: 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GA-KILMAAGDTFRAAASDQLEIWAERTG 225
++ VV ++G G GKTT++ KLA R E G+ + + DT+R A +QL I+ G
Sbjct: 280 KRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMG 339
Query: 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV 285
C + VA+ + + + V+ Q R ++L DT+G + L E+L + G+
Sbjct: 340 CPVRVAK-DSNELADVIYQLRNRR------LILVDTAGMGQRDVRLSEQLDTLMQESGET 392
Query: 286 VNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345
++ LVL T +L + E + ++G I+TKLD G VSVV + +P
Sbjct: 393 IHS-----YLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALP 447
Query: 346 VKFVGVGEGV-EDL 358
V ++ G+ V ED+
Sbjct: 448 VAYIANGQRVPEDI 461
>TIGR_CMR|VC_2068 [details] [associations]
symbol:VC_2068 "flagellar biosynthetic protein FlhF,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 59/194 (30%), Positives = 98/194 (50%)
Query: 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GA-KILMAAGDTFRAAASDQLEIWAERTG 225
++ VV ++G G GKTT++ KLA R E G+ + + DT+R A +QL I+ G
Sbjct: 280 KRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMG 339
Query: 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV 285
C + VA+ + + + V+ Q R ++L DT+G + L E+L + G+
Sbjct: 340 CPVRVAK-DSNELADVIYQLRNRR------LILVDTAGMGQRDVRLSEQLDTLMQESGET 392
Query: 286 VNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345
++ LVL T +L + E + ++G I+TKLD G VSVV + +P
Sbjct: 393 IHS-----YLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALP 447
Query: 346 VKFVGVGEGV-EDL 358
V ++ G+ V ED+
Sbjct: 448 VAYIANGQRVPEDI 461
>TIGR_CMR|CHY_1010 [details] [associations]
symbol:CHY_1010 "flagellar biosynthesis protein FlhF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0009426 "bacterial-type flagellum basal body, distal rod"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0019861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0017111 GO:GO:0006614
eggNOG:COG1419 KO:K02404 RefSeq:YP_359857.1
ProteinModelPortal:Q3ADC7 STRING:Q3ADC7 GeneID:3728496
KEGG:chy:CHY_1010 PATRIC:21275153 HOGENOM:HOG000254735 OMA:IVESIRI
ProtClustDB:PRK05703 BioCyc:CHYD246194:GJCN-1009-MONOMER
Uniprot:Q3ADC7
Length = 350
Score = 179 (68.1 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 60/200 (30%), Positives = 104/200 (52%)
Query: 175 IVGVNGGGKTTSLGKLAYRLK-NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233
++G G GKTT+L K+A RL +E I DTFR A +QL+I+ + G + VA G
Sbjct: 161 LIGPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYLGTTVKVA-G 219
Query: 234 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEI 293
+ L +AV++ E G + + DT+GR + ++EL +AV K +I
Sbjct: 220 SPME----LWRAVQKQNE-G-ETIFIDTAGRPSKKQNQIQELAGFLEAVKK-----EKDI 268
Query: 294 LLVLDGTTGLNMLPQ-AREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVG 352
LV+ T + A++F+ G I+TK+D + + G +++++ + P+ ++GVG
Sbjct: 269 YLVISATVKPEDAEKIAKDFSPC-GFNKFIVTKIDETDKFGVLINLIVKFKKPIVYLGVG 327
Query: 353 EGV-EDLQPFDAEAFVNAIF 371
+ V +DL E V ++
Sbjct: 328 QNVPDDLISATPELIVEQVW 347
>UNIPROTKB|Q3V8C7 [details] [associations]
symbol:flhF "Flagellar biogenesis protein FlhF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064
GO:GO:0006614 KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 70/235 (29%), Positives = 115/235 (48%)
Query: 130 DILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRK--PAVVLIVGVNGGGKTTSL 187
D L + + G + +A++ S L K K L +K P ++ +VG G GKTT++
Sbjct: 216 DHLKPEARKGGTV-EAIR-SFLPQAFKSAIKCSGPLTVKKNGPRIIALVGPTGVGKTTTI 273
Query: 188 GKLA--YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQA 245
KLA Y L+ EG + + D FR A +QL+ ++ G + VA A A+ L A
Sbjct: 274 AKLAAHYALR-EGHRAALITIDNFRVGAVEQLKTYSRIMGVPVEVA----ATAAE-LEAA 327
Query: 246 VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNM 305
++ ++ +++L DT+GR H + +EEL G + + EI L L TT
Sbjct: 328 IELHSDK--ELILIDTAGRSHKDSEKIEELK------GFLESRFAIEIHLCLAATTRDRE 379
Query: 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQ 359
+ + E V+ ++ +I TKLD S G +V+ P+ + G+ V EDL+
Sbjct: 380 VLEIVERFGVLSVSRVIFTKLDESESYGSIVNAHLRTKFPLSYFTTGQRVPEDLE 434
>TIGR_CMR|GSU_3055 [details] [associations]
symbol:GSU_3055 "flagellar biosynthetic protein FlhF,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR020006 Pfam:PF00448 SMART:SM00382 SMART:SM00962
GO:GO:0005525 GO:GO:0005886 GO:GO:0019861 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064 GO:GO:0006614
KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 70/235 (29%), Positives = 115/235 (48%)
Query: 130 DILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRK--PAVVLIVGVNGGGKTTSL 187
D L + + G + +A++ S L K K L +K P ++ +VG G GKTT++
Sbjct: 216 DHLKPEARKGGTV-EAIR-SFLPQAFKSAIKCSGPLTVKKNGPRIIALVGPTGVGKTTTI 273
Query: 188 GKLA--YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQA 245
KLA Y L+ EG + + D FR A +QL+ ++ G + VA A A+ L A
Sbjct: 274 AKLAAHYALR-EGHRAALITIDNFRVGAVEQLKTYSRIMGVPVEVA----ATAAE-LEAA 327
Query: 246 VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNM 305
++ ++ +++L DT+GR H + +EEL G + + EI L L TT
Sbjct: 328 IELHSDK--ELILIDTAGRSHKDSEKIEELK------GFLESRFAIEIHLCLAATTRDRE 379
Query: 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQ 359
+ + E V+ ++ +I TKLD S G +V+ P+ + G+ V EDL+
Sbjct: 380 VLEIVERFGVLSVSRVIFTKLDESESYGSIVNAHLRTKFPLSYFTTGQRVPEDLE 434
>UNIPROTKB|Q722L6 [details] [associations]
symbol:LMOf2365_0717 "Putative flagellar biosynthesis
protein FlhF" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000897 InterPro:IPR020006 Pfam:PF00448 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
TIGRFAMs:TIGR03499 RefSeq:YP_013321.1 ProteinModelPortal:Q722L6
STRING:Q722L6 GeneID:2797398 KEGG:lmf:LMOf2365_0717 PATRIC:20322642
HOGENOM:HOG000254016 OMA:QFHGKKK ProtClustDB:PRK12726
Uniprot:Q722L6
Length = 407
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 56/191 (29%), Positives = 97/191 (50%)
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
++ ++G G GKTT+L KL ++L + + DTFR+ A +Q + +A++ E++VA
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA 267
Query: 232 EGEKAKASSVLSQAVKRGKEQG-FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAP 290
+ + L +AV+ D +L DT GR NY L EE V+ A VV+ P
Sbjct: 268 T-----SPAELEEAVQYMTYVNCVDHILIDTVGR---NY-LAEESVSEISAYTDVVH--P 316
Query: 291 NEILLVLD-GTTG---LNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPV 346
+ G + +LP+ E + I G I+TK+D + R G + +V+ E +PV
Sbjct: 317 DLTCFTFSSGMKSADVMTILPKLAE----IPIDGFIITKMDETTRIGDLYTVMQETNLPV 372
Query: 347 KFVGVGEGVED 357
++ G+ + +
Sbjct: 373 LYMTDGQNITE 383
>UNIPROTKB|Q81SE2 [details] [associations]
symbol:BA_1718 "Putative flagellar biosynthetic protein
FlhF" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/224 (23%), Positives = 107/224 (47%)
Query: 135 KLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194
K ++ I + + +L+ ++ N TE + ++ + ++G G GKTT+L K+A++
Sbjct: 42 KFENATMITEEVIEYILEDMSSHFN-TE-NVFEKEVQTIALIGPTGVGKTTTLAKMAWQF 99
Query: 195 KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQG- 253
+ + D R QL+ + + G E++ E A +++A+ KE+
Sbjct: 100 HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA-----MTRALTYFKEEAR 154
Query: 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTT-GLNMLPQAREF 312
D +L DT+G+ + +EE++ + +G+V P+ I L L + +M+ F
Sbjct: 155 VDYILIDTAGKNYRASETVEEMI---ETMGQV---EPDYICLTLSASMKSKDMIEIITNF 208
Query: 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVE 356
D+ I G++ TK D +A G ++ + P+ + G+ V+
Sbjct: 209 KDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 251
>TIGR_CMR|BA_1718 [details] [associations]
symbol:BA_1718 "flagellar biosynthetic protein FlhF,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/224 (23%), Positives = 107/224 (47%)
Query: 135 KLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194
K ++ I + + +L+ ++ N TE + ++ + ++G G GKTT+L K+A++
Sbjct: 42 KFENATMITEEVIEYILEDMSSHFN-TE-NVFEKEVQTIALIGPTGVGKTTTLAKMAWQF 99
Query: 195 KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQG- 253
+ + D R QL+ + + G E++ E A +++A+ KE+
Sbjct: 100 HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA-----MTRALTYFKEEAR 154
Query: 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTT-GLNMLPQAREF 312
D +L DT+G+ + +EE++ + +G+V P+ I L L + +M+ F
Sbjct: 155 VDYILIDTAGKNYRASETVEEMI---ETMGQV---EPDYICLTLSASMKSKDMIEIITNF 208
Query: 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVE 356
D+ I G++ TK D +A G ++ + P+ + G+ V+
Sbjct: 209 KDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 251
>TIGR_CMR|CJE_0061 [details] [associations]
symbol:CJE_0061 "flagellar biosynthetic protein FlhF"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0005525 "GTP binding"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0017111 GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_178086.1 ProteinModelPortal:Q5HX99 STRING:Q5HX99
GeneID:3230824 KEGG:cjr:CJE0061 PATRIC:20041827 OMA:KVATNEY
BioCyc:CJEJ195099:GJC0-65-MONOMER Uniprot:Q5HX99
Length = 484
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 62/231 (26%), Positives = 114/231 (49%)
Query: 143 KDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAK 200
KDA++ LL + ++ +K ++++VG G GKTT+L KLA+R ++ K
Sbjct: 256 KDAVQRYFHSLL-RNILPCRVESDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYK 314
Query: 201 ILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCD 260
+ DT+R A +QL +A+ I+ + K L +A+K +++L D
Sbjct: 315 TGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPKD-----LDEAIK--SLNNCEVILVD 367
Query: 261 TSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITG 320
T G ++ Y +L K+ + + + A ++ LV+ T L + + + I
Sbjct: 368 TIG--NSQYD-QSKLAKTKEFL--MHSNAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDT 422
Query: 321 LILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAI 370
LI+TK D + G + S+V E IP+ F +G+ V +DL+ +++ V+ I
Sbjct: 423 LIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEVANSDFLVHCI 473
>UNIPROTKB|Q48GG0 [details] [associations]
symbol:flhF "Flagellar biosynthesis protein FlhF"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0017111
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009296 GO:GO:0001539
GO:GO:0009288 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:YP_275523.1 ProteinModelPortal:Q48GG0
STRING:Q48GG0 GeneID:3559389 KEGG:psp:PSPPH_3365 PATRIC:19976136
Uniprot:Q48GG0
Length = 442
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 55/188 (29%), Positives = 88/188 (46%)
Query: 172 VVLIVGVNGGGKTTSLGKLA--YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229
V+ +VG G GKTT+L KLA Y LK I + + D+FR A +QL+ +
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283
Query: 230 VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGA 289
+ ++ ++ KR +VL DT+G ++ +L +L + G+ G
Sbjct: 284 HVDPGQSLVQALEPLLRKR-------VVLIDTAGLQASDPALRMQL---ESLAGR---GI 330
Query: 290 PNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFV 349
+ LVL T+ +L A G+ G ILTKLD +A G V+S+ +PV ++
Sbjct: 331 KSRNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390
Query: 350 GVGEGVED 357
G + D
Sbjct: 391 TDGPRIPD 398
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 372 372 0.00087 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 610 (65 KB)
Total size of DFA: 208 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.39u 0.09s 32.48t Elapsed: 00:00:01
Total cpu time: 32.41u 0.10s 32.51t Elapsed: 00:00:01
Start: Sat May 11 08:48:21 2013 End: Sat May 11 08:48:22 2013