BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017380
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 583 bits (1502), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/327 (86%), Positives = 316/327 (96%), Gaps = 1/327 (0%)
Query: 46 CSAGGQTGFFTRLGRLIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDE 105
CSAG +GFFTRLGRLIKEKAKSDVEK+FSGFSKTR+NLAVIDELLL+WNLA+TD+VLDE
Sbjct: 34 CSAG-PSGFFTRLGRLIKEKAKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDE 92
Query: 106 LEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQL 165
LEEALLVSDFGP+IT++IVE LR+DI++GKLKSG +IKDALK SVL++L KK +KTELQL
Sbjct: 93 LEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQL 152
Query: 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225
G+RKPAV++IVGVNGGGKTTSLGKLA+RLKNEG K+LMAAGDTFRAAASDQLEIWAERTG
Sbjct: 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTG 212
Query: 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV 285
CEIVVAEG+KAKA++VLS+AVKRGKE+G+D+VLCDTSGRLHTNYSLMEEL+ACKKAVGK+
Sbjct: 213 CEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKI 272
Query: 286 VNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345
V+GAPNEILLVLDG TGLNMLPQAREFN+VVGITGLILTKLDGSARGGCVVSVV+ELGIP
Sbjct: 273 VSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332
Query: 346 VKFVGVGEGVEDLQPFDAEAFVNAIFS 372
VKF+GVGE VEDLQPFD EAFVNAIFS
Sbjct: 333 VKFIGVGEAVEDLQPFDPEAFVNAIFS 359
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 543 bits (1398), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/302 (86%), Positives = 293/302 (97%)
Query: 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD 130
EK+FSGFSKTR+NLAVIDELLL+WNLA+TD+VLDELEEALLVSDFGP+IT++IVE LR+D
Sbjct: 1 EKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLRED 60
Query: 131 ILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKL 190
I++GKLKSG +IKDALK SVL++L KK +KTELQLG+RKPAV++IVGVNGGGKTTSLGKL
Sbjct: 61 IMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKL 120
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK 250
A+RLKNEG K+LMAAGDTFRAAASDQLEIWAERTGCEIVVAEG+KAKA++VLS+AVKRGK
Sbjct: 121 AHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180
Query: 251 EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAR 310
E+G+D+VLCDTSGRLHTNYSLMEEL+ACKKAVGK+V+GAPNEILLVLDG TGLNMLPQAR
Sbjct: 181 EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 240
Query: 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 370
EFN+VVGITGLILTKLDGSARGGCVVSVV+ELGIPVKF+GVGE VEDLQPFD EAFVNAI
Sbjct: 241 EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 300
Query: 371 FS 372
FS
Sbjct: 301 FS 302
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/303 (71%), Positives = 265/303 (87%)
Query: 69 DVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLR 128
D++ +FSGFSKTR+NLAV+DELL YWNL +++ +LDELEE LLVSDFGP+ +KIV+++R
Sbjct: 15 DIQLLFSGFSKTRENLAVVDELLTYWNLDESESILDELEEVLLVSDFGPKTALKIVDTIR 74
Query: 129 DDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLG 188
DILAG+LKSGP IK+ALK ++ LLT++ TELQLG +PAV++IVGVNGGGKTT+LG
Sbjct: 75 KDILAGRLKSGPQIKEALKKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTTTLG 134
Query: 189 KLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKR 248
KLA R K EG K+LMAAGDTFRAAA +QLE+WA+RTG EIV+AEG K + ++VLSQAV+R
Sbjct: 135 KLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRR 194
Query: 249 GKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQ 308
E+ FD+VLCDTSGRLHTNY+LMEEL CK+AV K ++ APNE+LLVLDGTTGLNML Q
Sbjct: 195 AVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQ 254
Query: 309 AREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVN 368
AREFN V+G+TG ILTKLDG+ARGGCVVSVVDEL IPVKFVGVGEG++DLQPFDA++FV+
Sbjct: 255 AREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQSFVD 314
Query: 369 AIF 371
A+F
Sbjct: 315 ALF 317
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 199/321 (61%), Gaps = 21/321 (6%)
Query: 53 GFFTRLGR-LIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALL 111
GFF RL R L+K K E + SGF + L+ D + +ELEE LL
Sbjct: 194 GFFARLKRSLLKTK-----ENLGSGF------------ISLFRGKKIDDDLFEELEEQLL 236
Query: 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171
++D G T KI+ +L + +L+ + LK + ++L K L + + P
Sbjct: 237 IADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEP--LNVEGKAPF 294
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
V+L+VGVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R V+A
Sbjct: 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIA 353
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+ A ++SV+ A++ K + D+++ DT+GRL LMEEL + + K+ AP+
Sbjct: 354 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 413
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E++L +D +TG N + QA+ F++ VG+TG+ LTKLDG+A+GG + SV D+ GIP++++GV
Sbjct: 414 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 473
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GE +EDL+PF A+ F+ A+F+
Sbjct: 474 GERIEDLRPFKADDFIEALFA 494
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 172/261 (65%), Gaps = 3/261 (1%)
Query: 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171
++D G T KI+ +L + +L+ + LK + ++L K L + + P
Sbjct: 43 IADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEP--LNVEGKAPF 100
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
V+L+VGVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R V+A
Sbjct: 101 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIA 159
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+ A ++SV+ A++ K + D+++ DT+GRL LMEEL + + K+ AP+
Sbjct: 160 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 219
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E++L +D +TG N + QA+ F++ VG+TG+ LTKLDG+A+GG + SV D+ GIP++++GV
Sbjct: 220 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 279
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GE +EDL+PF A+ F+ A+F+
Sbjct: 280 GERIEDLRPFKADDFIEALFA 300
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 172/261 (65%), Gaps = 3/261 (1%)
Query: 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171
++D G T KI+ +L + +L+ + LK + ++L K L + + P
Sbjct: 42 IADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEP--LNVEGKAPF 99
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
V+L+VGVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R V+A
Sbjct: 100 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIA 158
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+ A ++SV+ A++ K + D+++ DT+GRL LMEEL + + K+ AP+
Sbjct: 159 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 218
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E++L +D +TG N + QA+ F++ VG+TG+ LTKLDG+A+GG + SV D+ GIP++++GV
Sbjct: 219 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 278
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GE +EDL+PF A+ F+ A+F+
Sbjct: 279 GERIEDLRPFKADDFIEALFA 299
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 172/261 (65%), Gaps = 3/261 (1%)
Query: 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171
++D G T KI+ +L + +L+ + LK + ++L K L + + P
Sbjct: 37 IADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEP--LNVEGKAPF 94
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231
V+L+VGVNG GKTT++GKLA + + +G +++AAGDTFRAAA +QL++W +R V+A
Sbjct: 95 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIA 153
Query: 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPN 291
+ A ++SV+ A++ K + D+++ DT+GRL LMEEL + + K+ AP+
Sbjct: 154 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 213
Query: 292 EILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGV 351
E++L +D +TG N + QA+ F++ VG+TG+ LTKLDG+A+GG + SV D+ GIP++++GV
Sbjct: 214 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 273
Query: 352 GEGVEDLQPFDAEAFVNAIFS 372
GE +EDL+PF A+ F+ A+F+
Sbjct: 274 GERIEDLRPFKADDFIEALFA 294
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 166/260 (63%), Gaps = 12/260 (4%)
Query: 113 SDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAV 172
+D G T I+E L + K G D ++LK +L++L T+L + P V
Sbjct: 58 ADVGVETTEYILERLEE-------KDG-DALESLKEIILEILN---FDTKLNVPPEPPFV 106
Query: 173 VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232
+++VGVNG GKTTS GKLA +EG +++AA DTFRAAA +QL+IW ER G V++
Sbjct: 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA-TVISH 165
Query: 233 GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNE 292
E A ++V AV + D+V+ DT+GRLHT +LMEEL + V K + AP+E
Sbjct: 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHE 225
Query: 293 ILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVG 352
LLV+D TTG N L QA+ F + V +TG+ILTKLDG+A+GG +++ ELGIP+KF+GVG
Sbjct: 226 TLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVG 285
Query: 353 EGVEDLQPFDAEAFVNAIFS 372
E EDL+PFD EAFV + S
Sbjct: 286 EKAEDLRPFDPEAFVEVLLS 305
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 176/299 (58%), Gaps = 13/299 (4%)
Query: 75 SGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAG 134
S F+ ++D I +L + AD D+ +ELE+ L+ +D G ++ +K+ +R
Sbjct: 14 SAFNFSKD----IKKLSKKYKQAD-DEFFEELEDVLIQTDMGMKMVLKVSNLVRKK--TK 66
Query: 135 KLKSGPDIKDALKNSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLA 191
+ S +IKDAL S+ T K + + + ++VGVNG GKTTSL K+A
Sbjct: 67 RDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126
Query: 192 YRLKNEGAKILMAAGDTFRAAASDQLEIWAE---RTGCEIVVAEGEKAKASSVLSQAVKR 248
G K+L+AA DTFRA A+ QLE W + ++V A A +SV+ A+K+
Sbjct: 127 NYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKK 186
Query: 249 GKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQ 308
KEQ +D++L DT+GRL +LM EL K + +V AP+E+LLV+D TTG N + Q
Sbjct: 187 AKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQ 246
Query: 309 AREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
A EF+ V ++G+ILTK+D +++GG +++ + L IP+K +GVGE V+DL FD + ++
Sbjct: 247 AEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYI 305
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 170/280 (60%), Gaps = 13/280 (4%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPD----IKDALKNSVLDL 153
D DK LDELE LL +D + + E ++ ++ K++ G D I++A+K +V ++
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI 110
Query: 154 L--TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211
L +++ + E KP V++ VG NG GKTT++ KLA LKN G +++AA DTFRA
Sbjct: 111 LETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170
Query: 212 AASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSL 271
A +QLE A+R G + V+ A ++V A++ K +G D+VL DT+GR TN +L
Sbjct: 171 GAIEQLEEHAKRIGVK-VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNL 229
Query: 272 MEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331
M+E+ K + +V PN ++ V D G ++ QAR+FN+ V I G+ILTKLD AR
Sbjct: 230 MDEM----KKIARVTK--PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADAR 283
Query: 332 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
GG +S+ + P+ FVGVG+G +DL+PF+ E F+ IF
Sbjct: 284 GGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIF 323
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 13/243 (5%)
Query: 141 DIKDALKNSVLDLLTKKGNKTEL-QLGY--RKPAVV-------LIVGVNGGGKTTSLGKL 190
D+K+A+K ++ +L + L +LG+ +KP V L+VGVNG GKTT++ KL
Sbjct: 63 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 122
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS-QAVKRG 249
+N G K++ AGDTFRAA QL W +R I V +G + S+ L+ AV+
Sbjct: 123 GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGPEGTDSAALAYDAVQAM 180
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD TG N L QA
Sbjct: 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 240
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFV A
Sbjct: 241 KKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEA 300
Query: 370 IFS 372
+
Sbjct: 301 LLE 303
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 167/280 (59%), Gaps = 13/280 (4%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPD----IKDALKNSVLDL 153
D DK LDELE LL +D + + E ++ ++ K++ G D I++A+K +V ++
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI 110
Query: 154 L--TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211
L +++ + E KP V+ VG NG GKTT++ KLA LKN G +++AA DTFRA
Sbjct: 111 LETSRRIDLIEEIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170
Query: 212 AASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSL 271
A +QLE A+R G + V+ A ++V A++ K +G D+VL DT+GR TN +L
Sbjct: 171 GAIEQLEEHAKRIGVK-VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNL 229
Query: 272 MEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331
+E K + +V PN ++ V D G ++ QAR+FN+ V I G+ILTKLD AR
Sbjct: 230 XDE----XKKIARVTK--PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADAR 283
Query: 332 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
GG +S+ + P+ FVGVG+G +DL+PF+ E F+ IF
Sbjct: 284 GGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIF 323
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 13/243 (5%)
Query: 141 DIKDALKNSVLDLLTKKGNKTEL-QLGY--RKPAVV-------LIVGVNGGGKTTSLGKL 190
D+K+A+K ++ +L + L +LG+ +KP V L+VGVNG GKTT++ KL
Sbjct: 63 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 122
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS-QAVKRG 249
+N G K++ AGDTFRAA QL W +R I V +G + + L+ AV+
Sbjct: 123 GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGPEGTDPAALAYDAVQAM 180
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD TG N L QA
Sbjct: 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 240
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFV A
Sbjct: 241 KKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEA 300
Query: 370 IFS 372
+
Sbjct: 301 LLE 303
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 13/243 (5%)
Query: 141 DIKDALKNSVLDLLTKKGNKTEL-QLGY--RKPAVV-------LIVGVNGGGKTTSLGKL 190
D+K+A+K ++ +L + L +LG+ +KP V L+VGVNG GKTT++ KL
Sbjct: 42 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 101
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS-QAVKRG 249
+N G K++ AGDTFRAA QL W +R I V +G + + L+ AV+
Sbjct: 102 GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGPEGTDPAALAYDAVQAM 159
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD TG N L QA
Sbjct: 160 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 219
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFV A
Sbjct: 220 KKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEA 279
Query: 370 IFS 372
+
Sbjct: 280 LLE 282
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 13/243 (5%)
Query: 141 DIKDALKNSVLDLLTKKGNKTEL-QLGY--RKPAVV-------LIVGVNGGGKTTSLGKL 190
D+K+A+K ++ +L + L +LG+ +KP V L+VGVNG GKTT++ KL
Sbjct: 43 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 102
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS-QAVKRG 249
+N G K++ AGDTFRAA QL W +R I V +G + + L+ AV+
Sbjct: 103 GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGPEGTDPAALAYDAVQAM 160
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD TG N L QA
Sbjct: 161 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 220
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFV A
Sbjct: 221 KKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEA 280
Query: 370 IFS 372
+
Sbjct: 281 LLE 283
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 13/243 (5%)
Query: 141 DIKDALKNSVLDLLTKKGNKTEL-QLGY--RKPAVV-------LIVGVNGGGKTTSLGKL 190
D+K+A+K ++ +L + L +LG+ +KP V L+VGVNG GKTT++ KL
Sbjct: 62 DLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 121
Query: 191 AYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS-QAVKRG 249
+N G K++ AGDTFRAA QL W +R I V +G + + L+ AV+
Sbjct: 122 GRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR--LSIPVIQGPEGTDPAALAYDAVQAM 179
Query: 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQA 309
K +G+D++ DT+GRLHT ++LMEEL K+A+ K P E+ LVLD TG N L QA
Sbjct: 180 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 239
Query: 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNA 369
++F++ VG+TG+I+TKLDG+A+GG ++ +V L +P+KFVGVGEG +DLQPFD EAFV A
Sbjct: 240 KKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEA 299
Query: 370 IFS 372
+
Sbjct: 300 LLE 302
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 160/276 (57%), Gaps = 15/276 (5%)
Query: 101 KVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--KG 158
+V+ +++ AL+ +D ++ +K+ + + L K G K+ + V + L K
Sbjct: 28 EVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGE 87
Query: 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE 218
+L+L +K V+L+VG+ G GKTT+ KLA ++ G K + A DT+R AA +QL+
Sbjct: 88 EAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLK 147
Query: 219 IWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ--GFDIVLCDTSGRLHTNYSLMEELV 276
AE+ I G++ + S + VK G E+ D+++ DT+GR L+EE+
Sbjct: 148 QLAEKIHVPIY---GDETRTKSPVD-IVKEGMEKFKKADVLIIDTAGRHKEEKGLLEEM- 202
Query: 277 ACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG-ITGLILTKLDGSARGGCV 335
K + ++ N P+EI+LV+DGT G QA+ F + VG I +I+TKLDGSA+GG
Sbjct: 203 ---KQIKEITN--PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGA 257
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S V E P+KF+G+GEG++DL+PFD + F++ +
Sbjct: 258 LSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLL 293
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 160/276 (57%), Gaps = 15/276 (5%)
Query: 101 KVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--KG 158
+V+ +++ AL+ +D ++ +K+ + + L K G K+ + V + L K
Sbjct: 28 EVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGE 87
Query: 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE 218
+L+L +K V+L+VG+ G GKTT+ KLA ++ G K + A DT+R AA +QL+
Sbjct: 88 EAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLK 147
Query: 219 IWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ--GFDIVLCDTSGRLHTNYSLMEELV 276
AE+ I G++ + S + VK G E+ D+++ DT+GR L+EE+
Sbjct: 148 QLAEKIHVPIY---GDETRTKSPVD-IVKEGMEKFKKADVLIIDTAGRHKEEKGLLEEM- 202
Query: 277 ACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVG-ITGLILTKLDGSARGGCV 335
K + ++ N P+EI+LV+DGT G QA+ F + VG I +I+TKLDGSA+GG
Sbjct: 203 ---KQIKEITN--PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGA 257
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S V E P+KF+G+GEG++DL+PFD + F++ +
Sbjct: 258 LSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLL 293
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 153/275 (55%), Gaps = 14/275 (5%)
Query: 101 KVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK---- 156
+++ +++ AL+ +D R+ +++ ++ L K +G K+ + V + LTK
Sbjct: 30 ELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGT 89
Query: 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
+ E++ KP ++L+VG+ G GKTT++ KLA + G K+ + DT+R A Q
Sbjct: 90 EAKPIEIK---EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQ 146
Query: 217 LEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELV 276
L +R E+ EK A + + V K +G DI++ DT+GR + +L+EE+
Sbjct: 147 LRQLLDRYHIEVFGNPQEK-DAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEM- 204
Query: 277 ACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVV 336
K + V++ P+E++LV+DGT G QA F + I +I+TKLDGSA+GG +
Sbjct: 205 ---KQISNVIH--PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 259
Query: 337 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
S V G P+KF+G GE ++D++PFD FV+ +
Sbjct: 260 SAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 163/283 (57%), Gaps = 19/283 (6%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSV 150
N+ DT L E+ ALL +D + + + +++ + + L G + ++N +
Sbjct: 26 NVKDT---LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNEL 82
Query: 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK-ILMAAGDTF 209
+ + ++ N+T L L + PAVVL+ G+ G GKTTS+GKL L+ + K +L+ + D +
Sbjct: 83 VAAMGEE-NQT-LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140
Query: 210 RAAASDQLEIWAERTGCEIVVAE-GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTN 268
R AA QLE AE+ G + ++ G+K +++ A+K K + +D++L DT+GRLH +
Sbjct: 141 RPAAIKQLETLAEQVGVDFFPSDVGQKP--VDIVNAALKEAKLKFYDVLLVDTAGRLHVD 198
Query: 269 YSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDG 328
++M+E+ K V +N P E L V+D TG + A+ FN+ + +TG++LTK+DG
Sbjct: 199 EAMMDEI----KQVHASIN--PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 252
Query: 329 SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
ARGG +S+ G P+KF+GVGE E L+PF + + I
Sbjct: 253 DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRIL 295
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 163/283 (57%), Gaps = 19/283 (6%)
Query: 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSV 150
N+ DT L E+ ALL +D + + + +++ + + L G + ++N +
Sbjct: 25 NVKDT---LREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNEL 81
Query: 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK-ILMAAGDTF 209
+ + ++ N+T L L + PAVVL+ G+ G GKTTS+GKL L+ + K +L+ + D +
Sbjct: 82 VAAMGEE-NQT-LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 139
Query: 210 RAAASDQLEIWAERTGCEIVVAE-GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTN 268
R AA QLE AE+ G + ++ G+K +++ A+K K + +D++L DT+GRLH +
Sbjct: 140 RPAAIKQLETLAEQVGVDFFPSDVGQKP--VDIVNAALKEAKLKFYDVLLVDTAGRLHVD 197
Query: 269 YSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDG 328
++M+E+ K V +N P E L V+D TG + A+ FN+ + +TG++LTK+DG
Sbjct: 198 EAMMDEI----KQVHASIN--PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 251
Query: 329 SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
ARGG +S+ G P+KF+GVGE E L+PF + + I
Sbjct: 252 DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRIL 294
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D +T VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D +T VE +R++ L ++ + + +V + L +
Sbjct: 25 DLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 84
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 85 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 143
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 144 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 201
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 202 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 255
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 256 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 291
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D +T VE +R++ L ++ + + +V + L +
Sbjct: 25 DLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 84
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 85 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 143
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 144 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 201
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 202 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 255
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 256 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 291
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D +T VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D +T VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKK 157
D L E+ AL+ +D + VE +R++ L ++ + + +V + L +
Sbjct: 26 DLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEA 85
Query: 158 -GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216
G + L + + + +VG+ G GKTT+ KLA K +G + L+ A DT R AA +Q
Sbjct: 86 LGGEARLPV-LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144
Query: 217 LEIWAERTGCEIV-VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEEL 275
L + E+ G ++ V +GE + S+ + ++ + + D++L DT+GRL + LM EL
Sbjct: 145 LRLLGEKVGVPVLEVMDGESPE--SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202
Query: 276 VACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV 335
K+ +G P+E+LLVLD TG L AR F++ VG+TGL+LTKLDG ARGG
Sbjct: 203 ARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAA 256
Query: 336 VSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
+S G P+ F GV E E L+PF E I
Sbjct: 257 LSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 157/300 (52%), Gaps = 26/300 (8%)
Query: 79 KTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAG---- 134
++ N +I+E +L + +L E+ ALL +D + IK+V+ LR+++ +
Sbjct: 15 RSLSNATIINEEVL-------NAMLKEVCTALLEAD----VNIKLVKQLRENVKSAIDLE 63
Query: 135 KLKSGPDIKDALKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLA 191
++ SG + + ++++V L K G K K V++ VG+ G GKTT+ KLA
Sbjct: 64 EMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPT-KGKQNVIMFVGLQGSGKTTTCSKLA 122
Query: 192 YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251
Y + +G K + DTFRA A DQL+ A + + E + S+ V++ K
Sbjct: 123 YYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE-MDPVIIASEGVEKFKN 181
Query: 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQARE 311
+ F+I++ DTSGR SL EE++ A+ P+ I+ V+D + G QA+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAI------QPDNIVYVMDASIGQACEAQAKA 235
Query: 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
F D V + +I+TKLDG A+GG +S V P+ F+G GE ++D +PF + F++ +
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 145/274 (52%), Gaps = 7/274 (2%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--K 157
D+ + +L+++L+ SD ++ + +++ + K S + K+ + V D L+K
Sbjct: 25 DEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84
Query: 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 217
G+K + P ++++VGV G GKTT+ GKLAY K G K+ + A D +R AA DQL
Sbjct: 85 GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL 144
Query: 218 EIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVA 277
+ G + V E + + V + DI++ DT+GR Y +L+
Sbjct: 145 LQLGNQIGVQ-VYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR--HGYGEETKLLE 201
Query: 278 CKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVS 337
K + V+ P++++LV+D + G A F+ I +I+TK+DG+A+GG +S
Sbjct: 202 EMKEMYDVLK--PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALS 259
Query: 338 VVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
V G +KF+G GE +++L+ F+A+ FV+ I
Sbjct: 260 AVVATGATIKFIGTGEKIDELETFNAKRFVSRIL 293
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 145/274 (52%), Gaps = 7/274 (2%)
Query: 100 DKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--K 157
D+ + +L+++L+ SD ++ + +++ + K S + K+ + V D L+K
Sbjct: 32 DEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 91
Query: 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 217
G+K + P ++++VGV G GKTT+ GKLAY K G K+ + A D +R AA DQL
Sbjct: 92 GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL 151
Query: 218 EIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVA 277
+ G + V E + + V + DI++ DT+GR Y +L+
Sbjct: 152 LQLGNQIGVQ-VYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR--HGYGEETKLLE 208
Query: 278 CKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVS 337
K + V+ P++++LV+D + G A F+ I +I+TK+DG+A+GG +S
Sbjct: 209 EMKEMYDVLK--PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALS 266
Query: 338 VVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371
V G +KF+G GE +++L+ F+A+ FV+ I
Sbjct: 267 AVVATGATIKFIGTGEKIDELETFNAKRFVSRIL 300
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 144/269 (53%), Gaps = 11/269 (4%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--KGNK 160
+ EL+++L+ +D ++ + +++ + K + + ++ V D L+ G+K
Sbjct: 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDK 88
Query: 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 220
+ + P V+++VGV G GKTT+ GKLAY K +G K+ + D +R AA +QL+
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 221 AERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGR--LHTNYSLMEELVAC 278
++ G + GEK + + V++ + +I++ DT+GR +L+EE+
Sbjct: 149 GQQIGVPVYGEPGEK-DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNI 207
Query: 279 KKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338
+A+ P+E+ LV+D + G A +FN I +I+TK+DG+A+GG +S
Sbjct: 208 YEAI------KPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 261
Query: 339 VDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
V G +KF+G GE +++L+ F+ FV
Sbjct: 262 VAATGATIKFIGTGEKIDELEVFNPRRFV 290
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 143/269 (53%), Gaps = 11/269 (4%)
Query: 103 LDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK--KGNK 160
+ EL+++L+ +D ++ + +++ + K + + ++ V D L+ G+K
Sbjct: 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDK 88
Query: 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 220
+ + P V+++VGV G GK T+ GKLAY K +G K+ + D +R AA +QL+
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 221 AERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGR--LHTNYSLMEELVAC 278
++ G + GEK + + V++ + +I++ DT+GR +L+EE+
Sbjct: 149 GQQIGVPVYGEPGEK-DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNI 207
Query: 279 KKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338
+A+ P+E+ LV+D + G A +FN I +I+TK+DG+A+GG +S
Sbjct: 208 YEAI------KPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 261
Query: 339 VDELGIPVKFVGVGEGVEDLQPFDAEAFV 367
V G +KF+G GE +++L+ F+ FV
Sbjct: 262 VAATGATIKFIGTGEKIDELEVFNPRRFV 290
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 173 VLIVGVNGGGKTTSLGKLA-YRLKNEGAKILMAAGDTFRAAASDQLEIWAE--RTGCEIV 229
+++ G G GKTT+L KLA + + KI DT+R AA +QL+ +AE + E+
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC 167
Query: 230 VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGA 289
+ E +A + S+ +D V DT+GR + ++EL +
Sbjct: 168 YTKEEFQQAKELFSE---------YDHVFVDTAGRNFKDPQYIDELKETIPFESSI---- 214
Query: 290 PNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFV 349
+ LVL T + + V + I TK+D + G V +++ E I V F+
Sbjct: 215 --QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFM 272
Query: 350 GVGEGV-EDLQPFDAEAFVNAI 370
G+ V ED+Q FV +
Sbjct: 273 TNGQNVPEDIQTVSPLGFVRML 294
>pdb|3J20|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 236
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 56 TRLGRLIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDF 115
T+LG ++KE +D+ +IF + ++ +ID LL N + +VLD + + ++D
Sbjct: 20 TKLGMMVKEGQITDIHEIFRRGYQIKEP-EIIDVLLPEVNARENQEVLD-IALTVRMTDS 77
Query: 116 GPRITIKIVESL--RDDILAGKLKSGPDIKDALKNSV 150
G R+ +++ ++ RD + + G ++ A++ ++
Sbjct: 78 GRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAI 114
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASD 215
VV + G+ G GKTT +LA L+ EG ++ + GD R S+
Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE 58
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILMAAGDTFRAAASDQLEIWAE 222
++P +L+ G +G GKTT +R+K + I++ GD+FR+ LE+ E
Sbjct: 30 KQPIAILLGGQSGAGKTT-----IHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQE 81
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 268 NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNML 306
NY +E A KK+V ++ G E +L +G TG N+L
Sbjct: 58 NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLL 96
>pdb|2O26|A Chain A, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|B Chain B, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|E Chain E, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|F Chain F, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O27|A Chain A, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O27|B Chain B, Structure Of A Class Iii Rtk Signaling Assembly
Length = 145
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 280 KAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVV----GITGLILTKLDGSARGGCV 335
K + K+V PN+ ++ L+ G+++LP D+V +L K + G
Sbjct: 11 KDITKLVANLPNDYMITLNYVAGMDVLPSHCWLRDMVIQLSLSLTTLLDKFSNISEGLSN 70
Query: 336 VSVVDELG 343
S++D+LG
Sbjct: 71 YSIIDKLG 78
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
Polymerase B1 From The Archaeon Sulfolobus Solfataricus
Length = 847
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 189 KLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKR 248
KL Y + K+ + A T+ ++ ++A R VAE A V++ VK+
Sbjct: 557 KLLYDVVQRAMKVFINA--TYGVFGAETFPLYAPR------VAESVTALGRYVITSTVKK 608
Query: 249 GKEQGFDIVLCDTSGRLHTN 268
+E+G ++ DT N
Sbjct: 609 AREEGLTVLYGDTDSLFLLN 628
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207
+V ++G NG GKTT+L +A ++ + KI+ D
Sbjct: 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69
>pdb|3ZEY|P Chain P, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 266
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 56 TRLGRLIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLAD 98
T+LGRL+K++ + +E+IF FS ++D+L+ +L D
Sbjct: 47 TKLGRLVKDQKITSLEEIFL-FSMPIKEHQIVDQLIREGDLRD 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,789,819
Number of Sequences: 62578
Number of extensions: 461861
Number of successful extensions: 1882
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 65
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)