Query 017380
Match_columns 372
No_of_seqs 569 out of 3136
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0552 FtsY Signal recognitio 100.0 2E-58 4.4E-63 437.4 24.1 307 65-372 29-340 (340)
2 PRK10416 signal recognition pa 100.0 8.4E-48 1.8E-52 372.5 25.4 314 54-372 1-315 (318)
3 COG0541 Ffh Signal recognition 100.0 1.3E-46 2.8E-51 366.5 20.0 268 96-372 24-295 (451)
4 PRK14974 cell division protein 100.0 1.2E-41 2.5E-46 330.8 21.2 268 95-372 59-335 (336)
5 TIGR01425 SRP54_euk signal rec 100.0 1.7E-41 3.7E-46 337.4 20.7 268 96-372 24-295 (429)
6 KOG0780 Signal recognition par 100.0 1.4E-40 3.1E-45 317.5 19.0 265 99-372 28-296 (483)
7 PRK10867 signal recognition pa 100.0 4.1E-40 8.9E-45 329.2 20.2 290 70-372 2-296 (433)
8 TIGR00064 ftsY signal recognit 100.0 1.5E-39 3.3E-44 308.9 20.7 270 99-371 3-272 (272)
9 PRK00771 signal recognition pa 100.0 7.9E-38 1.7E-42 313.4 20.4 264 97-372 21-288 (437)
10 TIGR00959 ffh signal recogniti 100.0 8.1E-38 1.8E-42 312.6 19.7 267 97-372 24-295 (428)
11 PRK14723 flhF flagellar biosyn 100.0 1.3E-37 2.9E-42 326.1 19.7 282 69-372 91-380 (767)
12 PRK06995 flhF flagellar biosyn 100.0 5.4E-36 1.2E-40 302.1 23.6 281 69-372 164-448 (484)
13 PRK12723 flagellar biosynthesi 100.0 2.2E-35 4.7E-40 291.7 21.3 279 69-372 84-369 (388)
14 PRK12726 flagellar biosynthesi 100.0 2.1E-35 4.5E-40 287.4 18.3 280 68-372 117-399 (407)
15 PF00448 SRP54: SRP54-type pro 100.0 1.4E-36 2.9E-41 275.6 8.9 196 170-372 1-196 (196)
16 PRK11889 flhF flagellar biosyn 100.0 3.4E-34 7.3E-39 279.6 18.4 256 99-372 176-434 (436)
17 COG1126 GlnQ ABC-type polar am 100.0 2E-34 4.3E-39 258.3 11.6 192 148-357 6-217 (240)
18 PRK14722 flhF flagellar biosyn 100.0 8.9E-33 1.9E-37 271.2 22.0 281 71-371 44-337 (374)
19 PRK14721 flhF flagellar biosyn 100.0 4.6E-33 1E-37 277.0 19.9 276 72-372 103-383 (420)
20 PRK12724 flagellar biosynthesi 100.0 3.3E-32 7.2E-37 268.8 20.5 261 97-371 151-415 (432)
21 COG1419 FlhF Flagellar GTP-bin 100.0 3.5E-32 7.6E-37 265.2 16.4 192 167-372 200-395 (407)
22 PRK05703 flhF flagellar biosyn 100.0 1.5E-31 3.3E-36 268.4 20.8 281 68-372 130-414 (424)
23 KOG0781 Signal recognition par 100.0 3.6E-32 7.8E-37 265.6 15.1 270 95-372 294-587 (587)
24 PRK06731 flhF flagellar biosyn 100.0 5.4E-32 1.2E-36 256.0 13.0 257 97-372 9-268 (270)
25 COG1120 FepC ABC-type cobalami 100.0 3.6E-32 7.8E-37 253.6 7.3 189 149-356 7-219 (258)
26 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-32 6.2E-37 253.2 2.9 174 148-348 8-205 (254)
27 COG1125 OpuBA ABC-type proline 100.0 6.1E-31 1.3E-35 240.7 10.7 206 148-372 5-237 (309)
28 COG1135 AbcC ABC-type metal io 100.0 8.6E-31 1.9E-35 245.9 9.5 192 149-356 6-222 (339)
29 COG1136 SalX ABC-type antimicr 100.0 1.5E-30 3.2E-35 238.3 10.7 191 149-353 6-219 (226)
30 COG1127 Ttg2A ABC-type transpo 100.0 3.9E-30 8.5E-35 234.0 10.6 193 148-355 12-225 (263)
31 COG4555 NatA ABC-type Na+ tran 100.0 3.5E-30 7.6E-35 228.4 9.8 187 148-355 5-212 (245)
32 COG2884 FtsE Predicted ATPase 100.0 8.4E-30 1.8E-34 224.1 11.6 194 147-357 4-218 (223)
33 COG1124 DppF ABC-type dipeptid 100.0 6.6E-30 1.4E-34 233.2 8.9 192 149-358 8-224 (252)
34 COG1116 TauB ABC-type nitrate/ 100.0 8.6E-30 1.9E-34 234.1 8.7 181 148-352 7-207 (248)
35 COG0411 LivG ABC-type branched 100.0 8.2E-30 1.8E-34 232.7 7.8 193 148-357 8-231 (250)
36 PRK12727 flagellar biosynthesi 100.0 2.4E-28 5.3E-33 246.6 18.8 276 68-371 260-540 (559)
37 COG1131 CcmA ABC-type multidru 100.0 2.9E-29 6.4E-34 241.1 9.4 188 148-356 8-217 (293)
38 COG3638 ABC-type phosphate/pho 100.0 8.4E-29 1.8E-33 224.7 11.2 209 148-371 7-244 (258)
39 COG3842 PotA ABC-type spermidi 100.0 6.3E-29 1.4E-33 241.2 8.0 187 148-355 9-216 (352)
40 COG4152 ABC-type uncharacteriz 100.0 3.3E-28 7.2E-33 221.5 11.0 184 148-355 6-209 (300)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 5E-28 1.1E-32 222.5 10.8 182 149-345 5-204 (218)
42 PRK13537 nodulation ABC transp 99.9 2.9E-28 6.4E-33 235.7 9.5 187 148-355 11-217 (306)
43 TIGR00960 3a0501s02 Type II (G 99.9 5.7E-28 1.2E-32 221.9 9.9 180 149-345 6-201 (216)
44 COG3839 MalK ABC-type sugar tr 99.9 2.5E-28 5.3E-33 236.0 7.7 187 148-355 7-213 (338)
45 cd03261 ABC_Org_Solvent_Resist 99.9 4.4E-28 9.6E-33 225.5 9.1 192 149-356 5-217 (235)
46 COG1137 YhbG ABC-type (unclass 99.9 1.7E-28 3.7E-33 217.4 5.7 190 147-355 7-218 (243)
47 COG1118 CysA ABC-type sulfate/ 99.9 8.2E-28 1.8E-32 225.4 10.0 186 148-354 6-216 (345)
48 TIGR01188 drrA daunorubicin re 99.9 1.4E-27 3E-32 230.6 11.9 182 153-355 2-203 (302)
49 TIGR02314 ABC_MetN D-methionin 99.9 5E-28 1.1E-32 237.1 8.9 192 149-356 6-221 (343)
50 TIGR01186 proV glycine betaine 99.9 1.1E-27 2.3E-32 236.2 10.9 188 153-355 2-209 (363)
51 PRK13536 nodulation factor exp 99.9 5.4E-28 1.2E-32 236.9 8.7 188 147-355 44-251 (340)
52 PRK11629 lolD lipoprotein tran 99.9 9.1E-28 2E-32 223.3 9.3 194 149-357 10-226 (233)
53 cd03226 ABC_cobalt_CbiO_domain 99.9 1.6E-27 3.4E-32 217.4 10.7 183 149-354 4-204 (205)
54 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.9E-27 4E-32 226.1 11.6 196 146-356 26-241 (269)
55 cd03259 ABC_Carb_Solutes_like 99.9 7.7E-28 1.7E-32 220.6 8.6 186 149-355 5-210 (213)
56 TIGR02211 LolD_lipo_ex lipopro 99.9 1.7E-27 3.7E-32 219.4 10.7 182 149-345 6-205 (221)
57 TIGR03608 L_ocin_972_ABC putat 99.9 1.4E-27 3E-32 217.5 9.9 181 149-345 3-197 (206)
58 COG4586 ABC-type uncharacteriz 99.9 4.7E-27 1E-31 217.0 13.0 185 157-357 37-238 (325)
59 TIGR02673 FtsE cell division A 99.9 2.6E-27 5.6E-32 217.1 11.1 180 149-345 6-200 (214)
60 COG4175 ProV ABC-type proline/ 99.9 4E-27 8.6E-32 221.4 12.3 192 149-355 33-244 (386)
61 TIGR03415 ABC_choXWV_ATP choli 99.9 3.6E-27 7.9E-32 233.6 12.7 194 148-356 28-245 (382)
62 TIGR02315 ABC_phnC phosphonate 99.9 3E-27 6.5E-32 220.8 11.1 192 149-356 6-226 (243)
63 PRK09536 btuD corrinoid ABC tr 99.9 1.2E-27 2.5E-32 238.7 7.7 190 148-357 7-220 (402)
64 cd03256 ABC_PhnC_transporter A 99.9 2.7E-27 5.9E-32 220.7 9.6 192 149-356 5-225 (241)
65 cd03219 ABC_Mj1267_LivG_branch 99.9 4.2E-27 9.1E-32 218.9 10.8 189 149-356 5-223 (236)
66 PRK10070 glycine betaine trans 99.9 5.1E-27 1.1E-31 234.0 12.0 193 148-355 32-244 (400)
67 PRK11153 metN DL-methionine tr 99.9 2.4E-27 5.3E-32 232.7 9.3 192 149-356 6-221 (343)
68 cd03258 ABC_MetN_methionine_tr 99.9 5.6E-27 1.2E-31 217.8 11.1 194 148-357 5-222 (233)
69 cd03268 ABC_BcrA_bacitracin_re 99.9 3.2E-27 6.9E-32 215.7 9.3 185 149-355 5-205 (208)
70 cd03265 ABC_DrrA DrrA is the A 99.9 2.4E-27 5.2E-32 218.5 8.5 188 149-356 5-212 (220)
71 PRK10584 putative ABC transpor 99.9 3.9E-27 8.4E-32 218.2 9.9 193 148-355 10-225 (228)
72 COG0410 LivF ABC-type branched 99.9 3.4E-27 7.3E-32 214.1 8.8 190 148-355 7-216 (237)
73 cd03292 ABC_FtsE_transporter F 99.9 5.1E-27 1.1E-31 215.1 10.2 179 150-345 6-199 (214)
74 cd03266 ABC_NatA_sodium_export 99.9 4.9E-27 1.1E-31 215.9 10.0 186 149-355 6-215 (218)
75 PRK10908 cell division protein 99.9 5.4E-27 1.2E-31 216.4 10.2 190 149-355 6-216 (222)
76 TIGR01288 nodI ATP-binding ABC 99.9 3.4E-27 7.3E-32 228.0 9.2 187 148-355 8-214 (303)
77 PRK11650 ugpC glycerol-3-phosp 99.9 2.8E-27 6.1E-32 233.1 8.7 186 149-355 8-214 (356)
78 COG1122 CbiO ABC-type cobalt t 99.9 9.2E-27 2E-31 216.3 11.6 190 151-358 10-221 (235)
79 cd03225 ABC_cobalt_CbiO_domain 99.9 3.6E-27 7.7E-32 215.8 8.7 177 149-345 4-197 (211)
80 TIGR01166 cbiO cobalt transpor 99.9 1.9E-26 4.1E-31 207.8 13.1 171 155-344 3-189 (190)
81 cd03262 ABC_HisP_GlnQ_permease 99.9 6.1E-27 1.3E-31 214.4 9.8 179 149-345 5-198 (213)
82 COG1129 MglA ABC-type sugar tr 99.9 2E-26 4.2E-31 231.6 13.7 208 147-372 11-244 (500)
83 cd03301 ABC_MalK_N The N-termi 99.9 5.3E-27 1.2E-31 214.9 8.8 186 149-355 5-210 (213)
84 cd03269 ABC_putative_ATPase Th 99.9 5.2E-27 1.1E-31 214.7 8.6 183 149-355 5-207 (210)
85 COG4598 HisP ABC-type histidin 99.9 4.9E-26 1.1E-30 198.8 14.1 195 146-355 8-231 (256)
86 cd03218 ABC_YhbG The ABC trans 99.9 9.4E-27 2E-31 216.0 10.1 188 149-355 5-212 (232)
87 PRK11432 fbpC ferric transport 99.9 4.5E-27 9.7E-32 231.2 8.2 188 148-356 10-217 (351)
88 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.5E-27 1.2E-31 216.1 8.0 184 149-356 5-214 (220)
89 PRK09493 glnQ glutamine ABC tr 99.9 8.7E-27 1.9E-31 217.5 9.4 190 149-356 6-216 (240)
90 TIGR03258 PhnT 2-aminoethylpho 99.9 5.1E-27 1.1E-31 231.6 8.1 187 148-355 9-218 (362)
91 PRK11247 ssuB aliphatic sulfon 99.9 6.4E-27 1.4E-31 221.0 8.5 185 148-356 16-214 (257)
92 TIGR03265 PhnT2 putative 2-ami 99.9 5.7E-27 1.2E-31 230.7 8.2 187 148-355 8-214 (353)
93 cd03296 ABC_CysA_sulfate_impor 99.9 6.9E-27 1.5E-31 218.2 8.3 186 149-355 7-216 (239)
94 cd03235 ABC_Metallic_Cations A 99.9 9.6E-27 2.1E-31 213.3 9.0 172 149-345 4-195 (213)
95 cd03297 ABC_ModC_molybdenum_tr 99.9 1.6E-26 3.5E-31 212.1 10.2 189 149-355 5-211 (214)
96 cd03224 ABC_TM1139_LivF_branch 99.9 7.6E-27 1.6E-31 215.1 8.1 189 149-356 5-212 (222)
97 PRK11264 putative amino-acid A 99.9 1.7E-26 3.8E-31 216.7 10.6 193 148-356 7-224 (250)
98 cd03263 ABC_subfamily_A The AB 99.9 1.7E-26 3.7E-31 212.6 10.2 186 149-356 5-212 (220)
99 TIGR03410 urea_trans_UrtE urea 99.9 1.4E-26 3E-31 214.7 9.6 191 149-356 5-212 (230)
100 PRK10851 sulfate/thiosulfate t 99.9 4.5E-27 9.8E-32 231.4 6.6 187 149-356 7-217 (353)
101 PRK11124 artP arginine transpo 99.9 1.6E-26 3.4E-31 216.0 9.8 192 149-356 7-221 (242)
102 cd03260 ABC_PstB_phosphate_tra 99.9 1.9E-26 4.2E-31 213.3 10.2 188 149-356 5-220 (227)
103 PRK15079 oligopeptide ABC tran 99.9 9.5E-27 2.1E-31 227.3 8.5 184 158-357 35-243 (331)
104 PRK11831 putative ABC transpor 99.9 1.4E-26 3.1E-31 220.0 9.3 192 148-355 11-223 (269)
105 PRK11000 maltose/maltodextrin 99.9 7.2E-27 1.6E-31 231.4 7.6 187 149-356 8-214 (369)
106 PRK11022 dppD dipeptide transp 99.9 1.2E-26 2.7E-31 226.2 8.6 193 149-357 8-235 (326)
107 PRK13538 cytochrome c biogenes 99.9 1.5E-26 3.2E-31 211.0 8.4 177 150-347 7-194 (204)
108 PRK15093 antimicrobial peptide 99.9 1.8E-26 4E-31 225.4 9.6 194 149-357 8-240 (330)
109 cd03257 ABC_NikE_OppD_transpor 99.9 2.6E-26 5.7E-31 212.2 10.1 192 149-355 6-225 (228)
110 PRK11300 livG leucine/isoleuci 99.9 2.1E-26 4.5E-31 216.8 9.5 191 148-356 9-234 (255)
111 PRK09452 potA putrescine/sperm 99.9 1.3E-26 2.7E-31 229.7 8.4 187 148-355 18-224 (375)
112 PRK13641 cbiO cobalt transport 99.9 2.1E-26 4.7E-31 220.8 9.6 191 149-356 7-225 (287)
113 TIGR03522 GldA_ABC_ATP gliding 99.9 1.5E-26 3.3E-31 223.3 8.4 185 149-355 7-211 (301)
114 cd03231 ABC_CcmA_heme_exporter 99.9 2.5E-26 5.4E-31 209.1 9.3 175 149-344 5-187 (201)
115 PRK13634 cbiO cobalt transport 99.9 2.5E-26 5.4E-31 220.7 9.8 184 158-357 21-227 (290)
116 PRK11231 fecE iron-dicitrate t 99.9 1.7E-26 3.8E-31 217.6 8.5 187 149-355 7-217 (255)
117 TIGR03411 urea_trans_UrtD urea 99.9 3.4E-26 7.4E-31 213.7 10.4 188 149-356 7-222 (242)
118 PRK13647 cbiO cobalt transport 99.9 1.2E-26 2.5E-31 221.2 7.3 188 149-356 9-218 (274)
119 TIGR03005 ectoine_ehuA ectoine 99.9 2.8E-26 6E-31 215.7 9.7 193 149-356 5-227 (252)
120 cd03264 ABC_drug_resistance_li 99.9 1.9E-26 4.2E-31 211.0 8.4 182 151-355 7-208 (211)
121 COG1123 ATPase components of v 99.9 4.1E-26 8.9E-31 230.7 11.4 207 148-371 284-530 (539)
122 PRK11248 tauB taurine transpor 99.9 1.7E-26 3.7E-31 217.8 8.1 184 150-357 7-212 (255)
123 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.8E-26 8.2E-31 211.4 10.2 188 143-355 21-221 (224)
124 PRK13646 cbiO cobalt transport 99.9 3.5E-26 7.7E-31 219.2 10.2 183 158-356 21-226 (286)
125 PRK13650 cbiO cobalt transport 99.9 3.2E-26 6.9E-31 218.7 9.8 189 149-356 9-220 (279)
126 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.8E-26 4E-31 214.9 7.9 189 149-357 6-213 (236)
127 PRK10619 histidine/lysine/argi 99.9 2.9E-26 6.2E-31 216.3 9.1 193 148-356 9-232 (257)
128 cd03298 ABC_ThiQ_thiamine_tran 99.9 3E-26 6.4E-31 209.8 8.8 184 149-355 5-208 (211)
129 PRK13638 cbiO cobalt transport 99.9 3.1E-26 6.6E-31 217.9 9.2 190 149-356 6-216 (271)
130 COG4604 CeuD ABC-type enteroch 99.9 5.3E-26 1.2E-30 201.2 9.9 194 148-355 5-215 (252)
131 PRK11308 dppF dipeptide transp 99.9 2.6E-26 5.6E-31 224.0 8.7 184 158-357 29-236 (327)
132 cd03267 ABC_NatA_like Similar 99.9 9.4E-26 2E-30 210.3 12.0 192 144-355 21-233 (236)
133 PRK10895 lipopolysaccharide AB 99.9 5.2E-26 1.1E-30 212.4 10.3 189 149-356 8-217 (241)
134 PRK13651 cobalt transporter AT 99.9 4.2E-26 9E-31 220.6 9.8 184 158-357 21-246 (305)
135 PRK10575 iron-hydroxamate tran 99.9 2.4E-26 5.2E-31 217.9 8.0 190 148-356 15-228 (265)
136 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.2E-26 6.9E-31 214.1 8.4 189 149-356 5-216 (242)
137 PRK13637 cbiO cobalt transport 99.9 3.3E-26 7.1E-31 219.5 8.7 182 158-356 21-225 (287)
138 PRK10762 D-ribose transporter 99.9 8.6E-26 1.9E-30 232.4 12.3 189 148-355 8-220 (501)
139 TIGR01189 ccmA heme ABC export 99.9 4.8E-26 1E-30 206.6 9.1 173 150-343 6-188 (198)
140 COG4181 Predicted ABC-type tra 99.9 1.1E-25 2.5E-30 195.1 10.9 196 148-357 10-227 (228)
141 PRK13540 cytochrome c biogenes 99.9 5.5E-26 1.2E-30 206.6 9.3 175 149-344 6-189 (200)
142 PRK10253 iron-enterobactin tra 99.9 2.8E-26 6.1E-31 217.5 7.7 190 148-356 11-224 (265)
143 PRK11701 phnK phosphonate C-P 99.9 7E-26 1.5E-30 213.8 10.3 194 148-356 10-232 (258)
144 TIGR01184 ntrCD nitrate transp 99.9 1.9E-25 4.1E-30 207.5 12.8 171 161-355 2-194 (230)
145 PRK09700 D-allose transporter 99.9 1.2E-25 2.5E-30 231.9 12.5 189 148-355 9-224 (510)
146 PRK14250 phosphate ABC transpo 99.9 7.2E-26 1.6E-30 211.7 9.8 188 149-356 8-212 (241)
147 PRK13548 hmuV hemin importer A 99.9 3.7E-26 8E-31 215.9 7.9 189 149-356 7-221 (258)
148 PRK13644 cbiO cobalt transport 99.9 6.5E-26 1.4E-30 216.1 9.6 188 149-355 6-214 (274)
149 PRK13643 cbiO cobalt transport 99.9 1.7E-25 3.6E-30 214.8 12.4 183 158-357 20-225 (288)
150 cd03214 ABC_Iron-Siderophores_ 99.9 5.1E-26 1.1E-30 203.5 8.0 163 150-355 5-177 (180)
151 PRK11607 potG putrescine trans 99.9 4.3E-26 9.4E-31 226.1 8.3 188 148-356 23-230 (377)
152 PRK11614 livF leucine/isoleuci 99.9 6.6E-26 1.4E-30 211.2 8.9 189 148-355 9-216 (237)
153 PRK13639 cbiO cobalt transport 99.9 7E-26 1.5E-30 216.0 9.3 188 150-356 7-217 (275)
154 PRK13539 cytochrome c biogenes 99.9 8E-26 1.7E-30 206.7 9.1 174 149-345 7-190 (207)
155 PRK13649 cbiO cobalt transport 99.9 7.7E-26 1.7E-30 216.1 9.2 181 158-355 21-224 (280)
156 TIGR02323 CP_lyasePhnK phospho 99.9 1.2E-25 2.7E-30 211.4 10.4 192 149-355 8-228 (253)
157 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-25 2.3E-30 232.2 10.8 190 148-356 15-220 (510)
158 PRK13549 xylose transporter AT 99.9 1.9E-25 4.1E-30 230.1 12.6 202 148-368 9-237 (506)
159 PRK10247 putative ABC transpor 99.9 9.5E-26 2.1E-30 208.8 9.3 178 148-345 11-201 (225)
160 TIGR02769 nickel_nikE nickel i 99.9 8.9E-26 1.9E-30 214.0 9.3 182 158-355 25-230 (265)
161 TIGR03873 F420-0_ABC_ATP propo 99.9 5.5E-26 1.2E-30 214.3 7.6 189 149-357 6-218 (256)
162 PRK13631 cbiO cobalt transport 99.9 1.3E-25 2.9E-30 218.4 10.3 194 147-357 24-257 (320)
163 COG1117 PstB ABC-type phosphat 99.9 9.1E-26 2E-30 202.1 8.3 190 148-356 11-228 (253)
164 TIGR00972 3a0107s01c2 phosphat 99.9 8.9E-26 1.9E-30 211.7 8.7 188 149-356 6-223 (247)
165 TIGR02142 modC_ABC molybdenum 99.9 5.4E-26 1.2E-30 224.2 7.4 189 150-355 5-211 (354)
166 PRK11144 modC molybdate transp 99.9 5.2E-26 1.1E-30 224.1 7.2 189 150-355 6-208 (352)
167 PRK09473 oppD oligopeptide tra 99.9 7.9E-26 1.7E-30 220.9 8.4 195 148-357 16-243 (330)
168 PRK13635 cbiO cobalt transport 99.9 5.8E-26 1.3E-30 217.0 7.3 188 149-355 10-219 (279)
169 PRK13652 cbiO cobalt transport 99.9 5.6E-26 1.2E-30 216.8 6.9 189 149-356 8-218 (277)
170 TIGR03740 galliderm_ABC gallid 99.9 1.3E-25 2.7E-30 207.4 8.9 184 149-356 5-204 (223)
171 COG0444 DppD ABC-type dipeptid 99.9 2.1E-25 4.6E-30 211.7 10.5 185 158-356 19-234 (316)
172 PRK13636 cbiO cobalt transport 99.9 1.5E-25 3.4E-30 214.4 9.6 192 148-356 9-222 (283)
173 PRK10982 galactose/methyl gala 99.9 2.2E-25 4.7E-30 228.8 11.4 189 149-356 3-214 (491)
174 PRK13543 cytochrome c biogenes 99.9 8.1E-26 1.8E-30 207.7 7.4 179 148-349 15-204 (214)
175 TIGR01277 thiQ thiamine ABC tr 99.9 1.6E-25 3.4E-30 205.5 8.9 184 149-355 5-208 (213)
176 PRK09984 phosphonate/organopho 99.9 1.6E-25 3.5E-30 211.8 8.9 193 149-356 9-233 (262)
177 PRK13648 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 212.7 8.8 190 148-356 11-222 (269)
178 PRK15112 antimicrobial peptide 99.9 3.6E-25 7.7E-30 210.2 10.7 180 158-356 27-230 (267)
179 TIGR02982 heterocyst_DevA ABC 99.9 2.7E-25 5.7E-30 205.0 9.5 172 158-345 19-205 (220)
180 PRK13633 cobalt transporter AT 99.9 2.8E-25 6.1E-30 212.3 9.8 190 149-356 9-224 (280)
181 cd03245 ABCC_bacteriocin_expor 99.9 3.1E-25 6.7E-30 204.2 9.4 185 149-355 7-217 (220)
182 PRK10771 thiQ thiamine transpo 99.9 2.2E-25 4.8E-30 207.1 8.3 185 149-356 6-210 (232)
183 cd03300 ABC_PotA_N PotA is an 99.9 3.9E-25 8.5E-30 205.5 9.8 187 149-356 5-211 (232)
184 PRK11288 araG L-arabinose tran 99.9 5.5E-25 1.2E-29 226.4 11.8 190 148-356 8-220 (501)
185 TIGR02324 CP_lyasePhnL phospho 99.9 4.7E-25 1E-29 203.6 10.0 172 158-345 22-212 (224)
186 PRK13645 cbiO cobalt transport 99.9 3.8E-25 8.2E-30 212.3 9.7 193 148-356 10-231 (289)
187 COG3845 ABC-type uncharacteriz 99.9 8.2E-25 1.8E-29 216.4 12.3 207 148-372 8-239 (501)
188 COG3840 ThiQ ABC-type thiamine 99.9 3.5E-25 7.7E-30 193.8 8.5 173 162-355 17-209 (231)
189 TIGR01978 sufC FeS assembly AT 99.9 2.5E-25 5.5E-30 207.7 8.1 189 149-356 5-225 (243)
190 PRK13549 xylose transporter AT 99.9 8.9E-25 1.9E-29 225.1 12.8 203 148-369 263-500 (506)
191 PRK10938 putative molybdenum t 99.9 3.1E-25 6.7E-30 227.6 9.1 189 148-356 7-215 (490)
192 PRK13632 cbiO cobalt transport 99.9 2.1E-25 4.6E-30 212.1 7.3 190 148-355 11-221 (271)
193 PRK13640 cbiO cobalt transport 99.9 3.9E-25 8.4E-30 211.6 9.1 189 149-356 10-223 (282)
194 PRK14242 phosphate transporter 99.9 5.3E-25 1.2E-29 207.0 9.7 189 148-356 10-228 (253)
195 cd03251 ABCC_MsbA MsbA is an e 99.9 6.6E-25 1.4E-29 203.9 9.5 185 150-356 6-216 (234)
196 PRK14273 phosphate ABC transpo 99.9 7.1E-25 1.5E-29 206.4 9.6 189 148-356 11-229 (254)
197 cd03299 ABC_ModC_like Archeal 99.9 6.1E-25 1.3E-29 204.7 9.0 186 150-357 6-211 (235)
198 PRK14268 phosphate ABC transpo 99.9 8.2E-25 1.8E-29 206.6 9.8 188 148-355 16-232 (258)
199 cd03252 ABCC_Hemolysin The ABC 99.9 5E-25 1.1E-29 205.2 8.2 185 150-356 6-216 (237)
200 PRK14267 phosphate ABC transpo 99.9 4.9E-25 1.1E-29 207.3 8.1 189 149-356 9-228 (253)
201 TIGR03269 met_CoM_red_A2 methy 99.9 1.2E-24 2.5E-29 224.9 11.7 204 148-369 283-518 (520)
202 PRK10419 nikE nickel transport 99.9 7.6E-25 1.6E-29 208.1 9.5 184 157-356 25-232 (268)
203 PRK13547 hmuV hemin importer A 99.9 5E-25 1.1E-29 209.8 8.2 189 149-356 6-235 (272)
204 COG1123 ATPase components of v 99.9 1.4E-24 3E-29 219.7 11.7 186 158-357 23-236 (539)
205 PRK14269 phosphate ABC transpo 99.9 9.9E-25 2.1E-29 204.6 9.9 187 148-356 6-221 (246)
206 PRK14247 phosphate ABC transpo 99.9 4.5E-25 9.7E-30 207.2 7.5 186 149-355 8-224 (250)
207 PRK13642 cbiO cobalt transport 99.9 6.1E-25 1.3E-29 209.7 8.5 189 149-356 9-220 (277)
208 PRK10744 pstB phosphate transp 99.9 5.4E-25 1.2E-29 208.0 8.1 189 148-356 17-235 (260)
209 PRK09700 D-allose transporter 99.9 1.5E-24 3.4E-29 223.5 12.2 191 159-368 278-504 (510)
210 PRK13541 cytochrome c biogenes 99.9 9.3E-25 2E-29 197.8 9.3 171 149-344 6-185 (195)
211 TIGR02633 xylG D-xylose ABC tr 99.9 1.7E-24 3.7E-29 222.7 12.2 189 149-356 6-221 (500)
212 COG2274 SunT ABC-type bacterio 99.9 4.5E-25 9.7E-30 232.9 8.0 236 102-358 428-689 (709)
213 COG4559 ABC-type hemin transpo 99.9 1.7E-24 3.7E-29 193.7 10.5 188 149-355 6-220 (259)
214 PRK10261 glutathione transport 99.9 5.1E-25 1.1E-29 232.1 8.4 183 158-356 338-544 (623)
215 PRK09544 znuC high-affinity zi 99.9 1.1E-24 2.3E-29 205.2 9.3 167 149-345 9-184 (251)
216 cd03229 ABC_Class3 This class 99.9 3.9E-25 8.4E-30 197.5 6.0 154 151-345 7-164 (178)
217 TIGR00968 3a0106s01 sulfate AB 99.9 7.4E-25 1.6E-29 204.4 8.2 186 150-356 6-211 (237)
218 cd03230 ABC_DR_subfamily_A Thi 99.9 7E-25 1.5E-29 195.0 7.3 147 152-345 8-158 (173)
219 COG4608 AppF ABC-type oligopep 99.9 1.6E-24 3.5E-29 201.6 10.0 153 158-356 27-190 (268)
220 PRK14248 phosphate ABC transpo 99.9 1E-24 2.2E-29 207.1 8.8 190 147-356 24-243 (268)
221 TIGR02770 nickel_nikD nickel i 99.9 4.6E-24 1E-28 198.1 12.9 176 160-356 2-206 (230)
222 PRK10261 glutathione transport 99.9 8.4E-25 1.8E-29 230.4 8.9 196 148-357 16-250 (623)
223 PRK14235 phosphate transporter 99.9 1E-24 2.2E-29 207.0 8.6 190 147-356 22-242 (267)
224 TIGR02633 xylG D-xylose ABC tr 99.9 2.9E-24 6.3E-29 221.0 12.4 203 148-369 261-498 (500)
225 cd03234 ABCG_White The White s 99.9 2.7E-24 5.8E-29 199.1 10.9 185 149-355 8-223 (226)
226 PRK15056 manganese/iron transp 99.9 7.4E-25 1.6E-29 208.5 7.2 185 148-356 10-221 (272)
227 PRK15134 microcin C ABC transp 99.9 1.6E-24 3.6E-29 224.3 10.2 194 148-356 9-237 (529)
228 CHL00131 ycf16 sulfate ABC tra 99.9 1.7E-24 3.7E-29 203.4 9.3 191 148-357 11-233 (252)
229 PRK14244 phosphate ABC transpo 99.9 2.3E-24 5E-29 202.5 10.1 188 149-356 10-228 (251)
230 PRK14241 phosphate transporter 99.9 1.4E-24 3E-29 205.0 8.6 190 148-356 8-233 (258)
231 PRK14240 phosphate transporter 99.9 1.8E-24 3.8E-29 203.2 9.0 188 149-356 8-225 (250)
232 PRK10418 nikD nickel transport 99.9 7.2E-25 1.6E-29 206.5 6.3 186 149-356 9-221 (254)
233 PRK14251 phosphate ABC transpo 99.9 2.3E-24 4.9E-29 202.6 9.5 189 148-356 8-226 (251)
234 cd03246 ABCC_Protease_Secretio 99.9 1.7E-24 3.7E-29 192.5 8.2 139 158-344 16-158 (173)
235 cd03216 ABC_Carb_Monos_I This 99.9 1.5E-24 3.2E-29 191.2 7.6 146 150-355 6-161 (163)
236 PRK10762 D-ribose transporter 99.9 1E-23 2.2E-28 217.1 14.7 190 160-368 268-489 (501)
237 cd03247 ABCC_cytochrome_bd The 99.9 2.5E-24 5.5E-29 192.2 9.0 141 158-345 16-160 (178)
238 PRK11288 araG L-arabinose tran 99.9 7.3E-24 1.6E-28 218.1 13.7 191 159-368 268-490 (501)
239 cd03254 ABCC_Glucan_exporter_l 99.9 3.6E-24 7.8E-29 198.3 10.3 185 150-356 8-217 (229)
240 PRK14246 phosphate ABC transpo 99.9 2.1E-24 4.6E-29 203.8 8.8 189 147-355 13-231 (257)
241 PRK14256 phosphate ABC transpo 99.9 1.8E-24 3.8E-29 203.5 8.1 190 149-356 9-227 (252)
242 COG4161 ArtP ABC-type arginine 99.9 2.2E-23 4.7E-28 179.4 14.1 208 148-370 6-240 (242)
243 PRK14249 phosphate ABC transpo 99.9 2.3E-24 4.9E-29 202.6 8.6 188 149-356 9-226 (251)
244 PRK14274 phosphate ABC transpo 99.9 2.8E-24 6.1E-29 203.0 9.2 189 148-356 16-234 (259)
245 PRK14245 phosphate ABC transpo 99.9 2.3E-24 5.1E-29 202.4 8.7 188 149-356 8-225 (250)
246 TIGR03269 met_CoM_red_A2 methy 99.9 2.5E-24 5.4E-29 222.5 9.5 193 149-356 5-249 (520)
247 PRK14259 phosphate ABC transpo 99.9 2.2E-24 4.7E-29 205.1 8.1 178 148-345 17-216 (269)
248 cd03215 ABC_Carb_Monos_II This 99.9 5.5E-24 1.2E-28 190.7 10.3 145 159-344 15-166 (182)
249 PRK14270 phosphate ABC transpo 99.9 2.9E-24 6.3E-29 201.9 8.8 188 149-356 9-226 (251)
250 PRK14262 phosphate ABC transpo 99.9 5.2E-24 1.1E-28 200.0 10.4 187 149-355 8-224 (250)
251 cd03244 ABCC_MRP_domain2 Domai 99.9 3.3E-24 7.2E-29 197.5 8.7 185 149-355 7-216 (221)
252 PRK14254 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 206.3 8.1 190 148-357 43-261 (285)
253 cd03228 ABCC_MRP_Like The MRP 99.9 5.9E-24 1.3E-28 188.7 9.9 146 151-345 7-158 (171)
254 cd03248 ABCC_TAP TAP, the Tran 99.9 3.3E-24 7.1E-29 198.3 8.3 176 148-345 15-212 (226)
255 PRK14239 phosphate transporter 99.9 3.6E-24 7.8E-29 201.2 8.7 189 148-356 9-227 (252)
256 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 6.8E-24 1.5E-28 197.7 10.4 177 158-356 17-217 (238)
257 PRK14253 phosphate ABC transpo 99.9 6.8E-24 1.5E-28 199.1 10.5 188 148-356 7-224 (249)
258 PRK14275 phosphate ABC transpo 99.9 3.9E-24 8.4E-29 205.1 8.9 189 148-356 43-261 (286)
259 PRK15134 microcin C ABC transp 99.9 3.9E-24 8.5E-29 221.5 9.6 193 147-356 278-506 (529)
260 KOG0058 Peptide exporter, ABC 99.9 5.6E-24 1.2E-28 218.7 10.4 192 144-356 465-682 (716)
261 PRK03695 vitamin B12-transport 99.9 3.6E-24 7.9E-29 201.1 8.3 177 159-356 11-213 (248)
262 PRK09580 sufC cysteine desulfu 99.9 2.2E-24 4.7E-29 202.1 6.7 190 149-356 6-226 (248)
263 cd03253 ABCC_ATM1_transporter 99.9 3.9E-24 8.6E-29 198.9 8.3 184 151-356 7-215 (236)
264 PRK14236 phosphate transporter 99.9 5.5E-24 1.2E-28 202.6 9.2 190 147-356 28-247 (272)
265 PRK15439 autoinducer 2 ABC tra 99.9 1.6E-23 3.5E-28 216.0 13.3 179 159-356 278-483 (510)
266 COG1119 ModF ABC-type molybden 99.9 3.4E-24 7.3E-29 196.1 7.2 193 147-355 34-252 (257)
267 PRK14272 phosphate ABC transpo 99.9 5.5E-24 1.2E-28 199.9 8.8 190 148-356 8-227 (252)
268 PRK14238 phosphate transporter 99.9 3.4E-24 7.5E-29 203.9 7.5 191 147-356 27-246 (271)
269 PRK14243 phosphate transporter 99.9 7E-24 1.5E-28 201.0 9.4 189 148-356 14-239 (264)
270 COG4525 TauB ABC-type taurine 99.9 6.9E-24 1.5E-28 187.6 8.6 173 149-345 8-196 (259)
271 cd03236 ABC_RNaseL_inhibitor_d 99.9 9.8E-24 2.1E-28 199.1 10.3 179 148-345 4-202 (255)
272 PRK14265 phosphate ABC transpo 99.9 6.6E-24 1.4E-28 202.3 9.1 191 148-357 24-250 (274)
273 cd03217 ABC_FeS_Assembly ABC-t 99.9 4E-24 8.6E-29 194.5 7.1 167 150-356 6-185 (200)
274 PRK14237 phosphate transporter 99.9 7.7E-24 1.7E-28 201.0 8.9 189 147-355 23-241 (267)
275 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.1E-23 2.4E-28 192.3 9.6 181 149-355 11-202 (207)
276 cd03213 ABCG_EPDR ABCG transpo 99.9 7.7E-24 1.7E-28 191.8 8.4 157 157-355 22-191 (194)
277 cd03233 ABC_PDR_domain1 The pl 99.9 8.4E-24 1.8E-28 192.7 8.4 174 149-355 8-199 (202)
278 cd03232 ABC_PDR_domain2 The pl 99.9 8.6E-24 1.9E-28 191.1 8.4 152 149-343 8-169 (192)
279 PRK13546 teichoic acids export 99.9 2.7E-23 5.8E-28 197.1 12.0 173 158-356 38-223 (264)
280 COG4133 CcmA ABC-type transpor 99.9 7.3E-23 1.6E-27 180.2 13.7 171 149-342 7-190 (209)
281 PRK14255 phosphate ABC transpo 99.9 9.1E-24 2E-28 198.5 8.7 190 148-357 9-228 (252)
282 PRK14260 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 200.2 8.0 189 148-355 11-233 (259)
283 PRK14258 phosphate ABC transpo 99.9 1.1E-23 2.3E-28 199.3 9.2 191 148-355 11-235 (261)
284 PRK14271 phosphate ABC transpo 99.9 1.2E-23 2.5E-28 200.8 9.4 190 146-355 23-241 (276)
285 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.7E-23 5.8E-28 195.1 11.7 160 160-345 10-179 (246)
286 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.1E-23 2.4E-28 200.8 9.2 185 149-356 7-216 (275)
287 cd03250 ABCC_MRP_domain1 Domai 99.9 1.4E-23 3E-28 191.2 9.5 171 149-345 5-191 (204)
288 PRK14252 phosphate ABC transpo 99.9 8.8E-24 1.9E-28 200.3 8.4 191 148-356 20-240 (265)
289 PRK14263 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 198.9 9.2 187 150-356 14-236 (261)
290 PRK10938 putative molybdenum t 99.9 1.6E-23 3.4E-28 215.0 10.4 190 148-356 264-483 (490)
291 COG4619 ABC-type uncharacteriz 99.9 7.9E-23 1.7E-27 176.9 13.0 179 152-345 11-197 (223)
292 TIGR03771 anch_rpt_ABC anchore 99.9 3.6E-23 7.8E-28 191.3 11.5 165 165-355 1-191 (223)
293 cd03290 ABCC_SUR1_N The SUR do 99.9 2.1E-23 4.7E-28 191.9 9.5 178 152-345 8-205 (218)
294 cd03288 ABCC_SUR2 The SUR doma 99.9 1.4E-23 3E-28 198.1 8.3 188 148-357 23-235 (257)
295 TIGR01194 cyc_pep_trnsptr cycl 99.9 2E-23 4.4E-28 217.3 9.6 194 147-359 340-553 (555)
296 TIGR01257 rim_protein retinal- 99.9 1.3E-23 2.9E-28 239.9 8.6 186 149-355 1942-2149(2272)
297 PRK14264 phosphate ABC transpo 99.9 2.3E-23 5.1E-28 201.5 8.9 191 147-357 48-281 (305)
298 PRK10982 galactose/methyl gala 99.9 5.7E-23 1.2E-27 210.9 12.3 190 159-367 263-484 (491)
299 PRK14261 phosphate ABC transpo 99.9 3.2E-23 7E-28 195.0 9.5 188 148-355 10-227 (253)
300 COG1134 TagH ABC-type polysacc 99.9 9.1E-23 2E-27 186.8 11.3 175 157-356 40-227 (249)
301 PRK13409 putative ATPase RIL; 99.9 4.9E-23 1.1E-27 215.1 10.9 180 146-345 75-274 (590)
302 PRK14266 phosphate ABC transpo 99.9 4.4E-23 9.6E-28 193.7 9.4 188 149-356 8-225 (250)
303 PRK11819 putative ABC transpor 99.9 4.4E-23 9.6E-28 214.8 10.3 189 148-355 10-239 (556)
304 PRK15177 Vi polysaccharide exp 99.9 1.2E-22 2.7E-27 186.6 12.0 169 159-355 2-182 (213)
305 KOG0057 Mitochondrial Fe/S clu 99.9 3.2E-22 6.9E-27 199.9 15.1 190 145-355 352-564 (591)
306 PRK11174 cysteine/glutathione 99.9 9.8E-23 2.1E-27 213.5 12.0 188 148-357 353-564 (588)
307 TIGR01257 rim_protein retinal- 99.9 3.6E-23 7.8E-28 236.4 9.1 187 147-355 931-1139(2272)
308 TIGR02868 CydC thiol reductant 99.9 5.7E-23 1.2E-27 212.7 9.6 173 147-342 337-529 (529)
309 PRK10636 putative ABC transpor 99.9 1.5E-23 3.2E-28 221.4 5.3 189 149-355 6-225 (638)
310 COG1101 PhnK ABC-type uncharac 99.9 9.2E-23 2E-27 183.0 9.6 183 159-358 21-231 (263)
311 PLN03211 ABC transporter G-25; 99.9 8.1E-23 1.8E-27 216.0 10.9 183 149-355 73-286 (659)
312 cd03223 ABCD_peroxisomal_ALDP 99.9 4.6E-23 9.9E-28 182.3 7.5 133 158-345 15-151 (166)
313 PRK15064 ABC transporter ATP-b 99.9 6.5E-23 1.4E-27 212.4 9.8 187 149-355 6-231 (530)
314 cd03222 ABC_RNaseL_inhibitor T 99.9 3.2E-23 7E-28 185.1 6.4 128 148-345 4-135 (177)
315 PRK13545 tagH teichoic acids e 99.9 4.9E-23 1.1E-27 209.2 8.4 173 158-356 38-223 (549)
316 PRK11176 lipid transporter ATP 99.9 5.6E-23 1.2E-27 215.0 9.1 189 147-357 344-559 (582)
317 PRK15064 ABC transporter ATP-b 99.9 5.6E-23 1.2E-27 212.9 8.8 174 148-355 323-514 (530)
318 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 5.1E-23 1.1E-27 219.3 8.6 187 147-357 454-665 (686)
319 COG4988 CydD ABC-type transpor 99.9 1.4E-22 3E-27 204.6 10.7 188 148-357 324-535 (559)
320 COG1132 MdlB ABC-type multidru 99.9 1.2E-22 2.7E-27 211.9 10.2 192 145-357 329-544 (567)
321 PRK10535 macrolide transporter 99.9 9.6E-23 2.1E-27 215.7 9.1 191 149-355 9-222 (648)
322 TIGR03375 type_I_sec_LssB type 99.9 5.7E-22 1.2E-26 211.6 15.1 199 147-370 466-690 (694)
323 COG4107 PhnK ABC-type phosphon 99.9 2.1E-21 4.6E-26 169.0 15.7 208 148-371 10-256 (258)
324 KOG0055 Multidrug/pheromone ex 99.9 4E-22 8.7E-27 215.3 13.8 191 146-357 352-568 (1228)
325 PRK13409 putative ATPase RIL; 99.9 7E-23 1.5E-27 214.0 7.7 164 149-345 345-517 (590)
326 PRK11160 cysteine/glutathione 99.9 1.2E-22 2.5E-27 212.4 9.3 188 147-356 341-553 (574)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.8E-22 3.9E-27 210.1 10.4 189 148-355 8-237 (552)
328 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.8E-22 3.9E-27 215.9 10.5 186 148-357 481-692 (710)
329 PRK10636 putative ABC transpor 99.9 1.7E-22 3.7E-27 213.3 10.0 176 148-355 316-506 (638)
330 PRK10522 multidrug transporter 99.9 1.2E-22 2.7E-27 211.1 8.6 189 148-356 326-529 (547)
331 COG4674 Uncharacterized ABC-ty 99.9 9.6E-23 2.1E-27 180.3 6.2 194 148-355 9-225 (249)
332 COG4172 ABC-type uncharacteriz 99.9 3.4E-22 7.4E-27 193.3 10.3 188 156-357 22-239 (534)
333 TIGR01193 bacteriocin_ABC ABC- 99.9 1.5E-22 3.2E-27 216.5 8.5 187 148-357 477-689 (708)
334 TIGR01192 chvA glucan exporter 99.9 1.8E-22 3.9E-27 211.5 8.7 188 148-356 338-549 (585)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.7E-22 3.8E-27 210.2 8.3 164 148-345 326-503 (552)
336 PRK11147 ABC transporter ATPas 99.9 2.4E-22 5.2E-27 212.3 9.3 175 148-355 323-517 (635)
337 TIGR01842 type_I_sec_PrtD type 99.9 7E-22 1.5E-26 205.3 12.3 189 148-357 320-534 (544)
338 COG4987 CydC ABC-type transpor 99.9 6E-22 1.3E-26 197.7 11.0 192 145-358 337-554 (573)
339 TIGR00958 3a01208 Conjugate Tr 99.9 1.1E-22 2.4E-27 217.5 6.1 188 146-357 480-694 (711)
340 PRK14257 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 196.7 7.6 190 147-356 83-304 (329)
341 cd03238 ABC_UvrA The excision 99.9 1.1E-21 2.3E-26 175.1 11.4 137 158-345 9-152 (176)
342 PRK10790 putative multidrug tr 99.9 1.1E-21 2.4E-26 205.7 13.2 187 148-356 344-554 (592)
343 PRK11819 putative ABC transpor 99.9 2.3E-22 5E-27 209.4 7.8 173 148-354 328-521 (556)
344 TIGR02203 MsbA_lipidA lipid A 99.9 3.9E-22 8.5E-27 208.1 8.8 186 148-355 334-546 (571)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.9E-22 4.1E-27 174.3 5.1 121 150-345 6-130 (144)
346 PRK11147 ABC transporter ATPas 99.9 7.6E-22 1.7E-26 208.5 10.6 190 148-355 7-232 (635)
347 TIGR01187 potA spermidine/putr 99.9 8.3E-22 1.8E-26 192.3 10.1 160 175-355 1-180 (325)
348 COG4148 ModC ABC-type molybdat 99.9 1.6E-22 3.4E-27 187.6 4.3 189 149-354 5-207 (352)
349 PRK13657 cyclic beta-1,2-gluca 99.9 5.2E-22 1.1E-26 208.1 8.4 188 147-356 337-549 (588)
350 TIGR02857 CydD thiol reductant 99.9 6.6E-22 1.4E-26 204.8 8.9 176 147-344 323-519 (529)
351 cd03291 ABCC_CFTR1 The CFTR su 99.9 2E-21 4.3E-26 185.9 11.5 172 157-355 50-237 (282)
352 COG0488 Uup ATPase components 99.9 4.4E-22 9.5E-27 204.1 7.1 187 148-353 7-227 (530)
353 TIGR01846 type_I_sec_HlyB type 99.9 2.1E-21 4.6E-26 207.2 12.6 189 148-357 459-672 (694)
354 PRK10789 putative multidrug tr 99.8 2.6E-21 5.5E-26 202.2 11.6 187 148-356 317-529 (569)
355 TIGR02204 MsbA_rel ABC transpo 99.8 5.5E-21 1.2E-25 199.7 12.6 187 148-356 341-554 (576)
356 KOG0055 Multidrug/pheromone ex 99.8 3.8E-21 8.3E-26 207.8 11.6 192 145-357 988-1205(1228)
357 PLN03130 ABC transporter C fam 99.8 2.7E-21 5.9E-26 221.1 10.6 191 145-356 1238-1452(1622)
358 COG0396 sufC Cysteine desulfur 99.8 6.5E-21 1.4E-25 172.8 10.7 180 158-356 18-225 (251)
359 PLN03232 ABC transporter C fam 99.8 2.7E-21 5.9E-26 220.5 10.1 190 145-356 1235-1449(1495)
360 COG4172 ABC-type uncharacteriz 99.8 3.9E-21 8.5E-26 186.0 9.4 183 158-357 301-508 (534)
361 TIGR00955 3a01204 The Eye Pigm 99.8 8.2E-21 1.8E-25 200.0 12.8 177 156-355 37-246 (617)
362 COG4618 ArpD ABC-type protease 99.8 9E-21 2E-25 188.0 12.1 178 158-354 350-549 (580)
363 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.5E-21 3.3E-26 170.5 5.7 133 153-346 8-144 (157)
364 PLN03073 ABC transporter F fam 99.8 4.9E-21 1.1E-25 203.8 9.6 193 148-370 512-716 (718)
365 PTZ00265 multidrug resistance 99.8 5.1E-21 1.1E-25 217.0 10.3 189 145-353 383-656 (1466)
366 TIGR00957 MRP_assoc_pro multi 99.8 9.9E-21 2.1E-25 216.2 11.7 191 145-357 1285-1500(1522)
367 PLN03073 ABC transporter F fam 99.8 1.3E-20 2.8E-25 200.7 11.1 195 145-355 178-420 (718)
368 PTZ00265 multidrug resistance 99.8 1E-20 2.3E-25 214.5 11.0 190 147-355 1168-1441(1466)
369 PTZ00243 ABC transporter; Prov 99.8 6.2E-21 1.3E-25 217.7 8.3 190 145-356 1309-1524(1560)
370 TIGR00954 3a01203 Peroxysomal 99.8 9.4E-21 2E-25 200.8 8.6 164 147-345 454-642 (659)
371 COG0488 Uup ATPase components 99.8 3.4E-20 7.3E-25 190.3 10.6 166 147-345 324-499 (530)
372 TIGR00956 3a01205 Pleiotropic 99.8 4.3E-20 9.3E-25 209.1 12.4 175 157-355 776-983 (1394)
373 PF00005 ABC_tran: ABC transpo 99.8 2.2E-20 4.9E-25 158.8 5.8 129 160-301 1-137 (137)
374 COG4167 SapF ABC-type antimicr 99.8 3.4E-19 7.5E-24 156.4 12.2 181 158-357 27-231 (267)
375 TIGR01271 CFTR_protein cystic 99.8 4.1E-20 9E-25 210.6 8.1 187 147-356 1220-1431(1490)
376 PLN03140 ABC transporter G fam 99.8 1.6E-19 3.4E-24 204.4 12.0 175 158-355 894-1100(1470)
377 COG4136 ABC-type uncharacteriz 99.8 4.4E-20 9.5E-25 157.3 5.3 175 150-345 8-198 (213)
378 KOG0056 Heavy metal exporter H 99.8 9.9E-20 2.1E-24 179.4 8.0 236 101-356 493-752 (790)
379 TIGR00956 3a01205 Pleiotropic 99.8 2.2E-19 4.8E-24 203.4 11.9 179 158-355 75-290 (1394)
380 cd03270 ABC_UvrA_I The excisio 99.8 1.5E-19 3.2E-24 167.7 8.4 75 258-344 120-201 (226)
381 PLN03140 ABC transporter G fam 99.8 2.8E-19 6.1E-24 202.4 9.9 177 157-355 178-417 (1470)
382 KOG0059 Lipid exporter ABCA1 a 99.8 3.9E-19 8.4E-24 193.7 9.6 183 145-345 565-761 (885)
383 COG4615 PvdE ABC-type sideroph 99.8 1.5E-19 3.3E-24 174.4 4.5 194 142-356 320-528 (546)
384 cd03115 SRP The signal recogni 99.8 1.6E-18 3.5E-23 153.7 9.9 172 172-350 2-173 (173)
385 TIGR01271 CFTR_protein cystic 99.8 2E-18 4.2E-23 197.0 11.2 171 158-355 440-626 (1490)
386 KOG0061 Transporter, ABC super 99.8 2.7E-18 5.8E-23 180.1 11.3 176 157-355 43-250 (613)
387 cd03278 ABC_SMC_barmotin Barmo 99.7 3.6E-18 7.8E-23 155.2 9.0 148 161-344 14-178 (197)
388 TIGR00957 MRP_assoc_pro multi 99.7 7.1E-18 1.5E-22 192.9 12.2 183 149-355 641-840 (1522)
389 COG4778 PhnL ABC-type phosphon 99.7 6.2E-18 1.3E-22 146.9 8.8 173 158-345 25-215 (235)
390 COG4138 BtuD ABC-type cobalami 99.7 1.9E-17 4E-22 144.6 10.6 176 160-355 15-211 (248)
391 PTZ00243 ABC transporter; Prov 99.7 1.1E-17 2.5E-22 191.1 11.4 172 157-355 673-860 (1560)
392 TIGR03499 FlhF flagellar biosy 99.7 2.3E-16 4.9E-21 151.1 17.4 174 71-263 107-282 (282)
393 PLN03130 ABC transporter C fam 99.7 1.8E-17 3.8E-22 190.0 11.2 182 148-355 618-818 (1622)
394 PLN03232 ABC transporter C fam 99.7 1.9E-17 4.2E-22 189.1 11.5 184 148-356 618-819 (1495)
395 KOG0054 Multidrug resistance-a 99.7 2.3E-17 4.9E-22 182.3 11.3 190 144-356 1138-1353(1381)
396 COG5265 ATM1 ABC-type transpor 99.7 8.8E-17 1.9E-21 156.7 11.9 188 149-357 267-478 (497)
397 KOG0927 Predicted transporter 99.7 2.2E-17 4.8E-22 165.0 7.8 170 148-345 393-569 (614)
398 cd03271 ABC_UvrA_II The excisi 99.7 1.9E-16 4.1E-21 149.7 12.2 76 258-345 152-235 (261)
399 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.3E-16 2.9E-21 148.9 9.0 69 262-343 146-222 (243)
400 cd03279 ABC_sbcCD SbcCD and ot 99.6 1.6E-16 3.5E-21 146.0 5.9 162 161-345 18-196 (213)
401 KOG0062 ATPase component of AB 99.6 3E-16 6.6E-21 156.1 8.2 164 143-345 79-258 (582)
402 cd03240 ABC_Rad50 The catalyti 99.6 3.5E-16 7.6E-21 142.9 5.9 150 164-345 17-186 (204)
403 KOG0927 Predicted transporter 99.6 1.9E-15 4.1E-20 151.2 11.1 184 144-345 75-282 (614)
404 cd03274 ABC_SMC4_euk Eukaryoti 99.6 5.3E-16 1.1E-20 142.6 5.3 71 260-343 113-191 (212)
405 KOG2355 Predicted ABC-type tra 99.6 1.6E-15 3.4E-20 135.7 6.8 195 149-358 18-230 (291)
406 COG4170 SapD ABC-type antimicr 99.6 2.9E-15 6.3E-20 134.4 8.4 185 157-356 20-239 (330)
407 COG1245 Predicted ATPase, RNas 99.6 3.3E-15 7E-20 147.0 9.3 151 167-345 364-519 (591)
408 KOG0066 eIF2-interacting prote 99.6 3.7E-15 8E-20 145.8 8.7 159 160-347 603-766 (807)
409 cd03273 ABC_SMC2_euk Eukaryoti 99.6 8.7E-16 1.9E-20 144.5 3.9 64 267-343 159-230 (251)
410 cd03276 ABC_SMC6_euk Eukaryoti 99.6 7.9E-15 1.7E-19 133.4 10.0 160 161-348 13-182 (198)
411 COG4178 ABC-type uncharacteriz 99.6 7.7E-15 1.7E-19 150.9 10.5 161 160-345 409-577 (604)
412 KOG0065 Pleiotropic drug resis 99.5 3.7E-15 8E-20 162.0 5.7 166 158-345 805-993 (1391)
413 COG1245 Predicted ATPase, RNas 99.5 3.2E-14 6.9E-19 140.1 11.2 184 146-344 76-275 (591)
414 COG2401 ABC-type ATPase fused 99.5 2.9E-14 6.2E-19 139.0 9.5 170 158-355 397-588 (593)
415 cd03275 ABC_SMC1_euk Eukaryoti 99.5 4.4E-15 9.5E-20 139.5 3.4 64 269-344 150-221 (247)
416 COG1129 MglA ABC-type sugar tr 99.5 1.3E-13 2.8E-18 139.3 12.8 194 160-371 275-498 (500)
417 cd03280 ABC_MutS2 MutS2 homolo 99.5 6.7E-14 1.4E-18 127.3 8.5 141 160-355 17-169 (200)
418 KOG0054 Multidrug resistance-a 99.5 1.1E-13 2.4E-18 153.4 10.7 176 159-355 536-721 (1381)
419 PRK00635 excinuclease ABC subu 99.4 7.3E-13 1.6E-17 150.4 13.6 75 259-345 793-875 (1809)
420 PRK00349 uvrA excinuclease ABC 99.4 6.6E-13 1.4E-17 144.6 12.8 75 259-345 814-896 (943)
421 cd03282 ABC_MSH4_euk MutS4 hom 99.4 6.3E-13 1.4E-17 121.5 9.9 135 158-345 17-154 (204)
422 KOG0060 Long-chain acyl-CoA tr 99.4 1.2E-12 2.7E-17 132.1 11.1 167 160-345 451-630 (659)
423 cd03277 ABC_SMC5_euk Eukaryoti 99.4 3.4E-12 7.4E-17 117.4 11.9 68 267-345 119-195 (213)
424 cd03243 ABC_MutS_homologs The 99.4 1.2E-12 2.5E-17 119.3 8.7 130 162-345 21-154 (202)
425 TIGR00630 uvra excinuclease AB 99.4 5.7E-12 1.2E-16 137.1 14.6 74 260-345 813-894 (924)
426 KOG0062 ATPase component of AB 99.3 7.1E-13 1.5E-17 132.3 5.2 162 161-354 381-557 (582)
427 cd03283 ABC_MutS-like MutS-lik 99.3 2.9E-12 6.2E-17 116.7 7.6 47 288-345 104-151 (199)
428 smart00534 MUTSac ATPase domai 99.3 3.3E-12 7.1E-17 114.9 6.5 121 172-345 1-125 (185)
429 COG3845 ABC-type uncharacteriz 99.3 1.5E-11 3.2E-16 122.8 11.4 195 158-370 272-499 (501)
430 cd03227 ABC_Class2 ABC-type Cl 99.3 1.1E-11 2.4E-16 109.1 8.8 122 164-345 15-144 (162)
431 KOG0064 Peroxisomal long-chain 99.3 3.4E-12 7.3E-17 127.7 4.8 181 160-363 498-694 (728)
432 cd03239 ABC_SMC_head The struc 99.2 1.5E-11 3.2E-16 110.0 7.8 59 275-345 95-161 (178)
433 cd03285 ABC_MSH2_euk MutS2 hom 99.2 7E-11 1.5E-15 109.4 9.8 132 158-344 18-155 (222)
434 KOG0066 eIF2-interacting prote 99.2 2E-11 4.3E-16 119.9 6.1 168 161-345 281-472 (807)
435 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1.2E-10 2.6E-15 107.1 8.9 138 159-346 18-158 (213)
436 cd03241 ABC_RecN RecN ATPase i 99.1 3.8E-10 8.3E-15 107.8 11.0 63 270-345 166-236 (276)
437 TIGR01069 mutS2 MutS2 family p 99.1 1.9E-10 4.2E-15 123.7 8.3 130 163-346 314-449 (771)
438 cd03287 ABC_MSH3_euk MutS3 hom 99.0 6.7E-10 1.4E-14 102.8 8.5 137 158-345 19-157 (222)
439 cd03284 ABC_MutS1 MutS1 homolo 98.9 4.1E-09 8.8E-14 97.2 8.6 35 159-194 20-54 (216)
440 TIGR02858 spore_III_AA stage I 98.9 5.7E-09 1.2E-13 99.3 9.4 39 171-209 112-150 (270)
441 PRK00635 excinuclease ABC subu 98.9 2.1E-08 4.5E-13 114.8 14.0 76 260-345 1684-1765(1809)
442 KOG0065 Pleiotropic drug resis 98.8 2E-09 4.3E-14 118.1 4.3 184 158-355 129-341 (1391)
443 COG0178 UvrA Excinuclease ATPa 98.8 3.9E-08 8.5E-13 103.4 13.6 78 257-345 805-888 (935)
444 PRK07721 fliI flagellum-specif 98.8 8.4E-08 1.8E-12 97.1 15.2 175 158-355 147-333 (438)
445 cd01124 KaiC KaiC is a circadi 98.8 4.2E-08 9.1E-13 87.4 11.5 129 172-344 1-142 (187)
446 PRK00409 recombination and DNA 98.8 1.1E-08 2.5E-13 110.4 8.8 70 265-345 381-453 (782)
447 cd01120 RecA-like_NTPases RecA 98.8 8.3E-08 1.8E-12 82.5 12.2 37 172-208 1-37 (165)
448 KOG0063 RNAse L inhibitor, ABC 98.8 3.1E-08 6.6E-13 97.6 9.8 185 144-345 74-276 (592)
449 COG3910 Predicted ATPase [Gene 98.7 1.2E-07 2.5E-12 84.4 11.5 145 170-342 37-188 (233)
450 cd00820 PEPCK_HprK Phosphoenol 98.7 1.1E-08 2.4E-13 83.7 4.5 45 158-208 3-47 (107)
451 cd03286 ABC_MSH6_euk MutS6 hom 98.7 2.2E-08 4.7E-13 92.5 7.0 137 158-345 18-156 (218)
452 PTZ00132 GTP-binding nuclear p 98.7 5.1E-08 1.1E-12 89.3 9.2 37 281-327 162-204 (215)
453 PRK08533 flagellar accessory p 98.7 1.6E-07 3.4E-12 87.5 11.8 41 167-208 21-62 (230)
454 cd03242 ABC_RecF RecF is a rec 98.7 2.6E-07 5.6E-12 88.0 12.9 42 270-313 179-233 (270)
455 KOG0063 RNAse L inhibitor, ABC 98.7 4.1E-08 9E-13 96.7 7.1 148 162-345 354-520 (592)
456 PF02463 SMC_N: RecF/RecN/SMC 98.7 7.1E-08 1.5E-12 88.6 7.9 59 274-345 136-202 (220)
457 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.2E-08 4.8E-13 101.0 4.6 50 159-210 21-71 (504)
458 TIGR00750 lao LAO/AO transport 98.6 8.1E-08 1.8E-12 92.9 7.4 107 162-268 26-141 (300)
459 PRK00349 uvrA excinuclease ABC 98.5 1.8E-07 3.8E-12 102.6 6.2 81 259-349 473-563 (943)
460 PRK13695 putative NTPase; Prov 98.5 8.1E-07 1.8E-11 78.8 9.1 132 172-344 2-138 (174)
461 PRK06067 flagellar accessory p 98.4 1.6E-06 3.5E-11 80.6 10.8 42 167-208 22-63 (234)
462 PRK12337 2-phosphoglycerate ki 98.4 4.5E-07 9.8E-12 91.5 7.3 108 99-211 176-292 (475)
463 TIGR00630 uvra excinuclease AB 98.4 3E-07 6.5E-12 100.6 5.9 80 260-349 472-561 (924)
464 cd01128 rho_factor Transcripti 98.4 9.9E-07 2.1E-11 83.1 8.0 33 165-197 11-43 (249)
465 TIGR01026 fliI_yscN ATPase Fli 98.4 4.2E-06 9.2E-11 84.9 13.0 49 158-207 152-200 (440)
466 cd01130 VirB11-like_ATPase Typ 98.4 2.7E-07 5.8E-12 83.0 3.9 41 165-205 20-60 (186)
467 PF13304 AAA_21: AAA domain; P 98.4 1.9E-06 4.2E-11 78.3 9.5 64 271-344 233-301 (303)
468 smart00382 AAA ATPases associa 98.3 8.2E-06 1.8E-10 67.2 11.6 39 170-208 2-40 (148)
469 smart00053 DYNc Dynamin, GTPas 98.3 5.5E-07 1.2E-11 84.3 4.4 155 172-334 28-210 (240)
470 TIGR00554 panK_bact pantothena 98.3 1.1E-06 2.4E-11 84.4 5.3 44 168-211 60-105 (290)
471 PRK09270 nucleoside triphospha 98.2 1.8E-06 3.9E-11 80.2 6.4 43 168-210 31-74 (229)
472 cd01131 PilT Pilus retraction 98.2 6.5E-06 1.4E-10 74.8 9.6 34 172-205 3-37 (198)
473 PF02881 SRP54_N: SRP54-type p 98.2 2.8E-06 6.1E-11 64.9 5.8 74 73-150 1-75 (75)
474 cd03114 ArgK-like The function 98.2 1E-06 2.3E-11 76.4 3.5 38 172-209 1-38 (148)
475 cd00009 AAA The AAA+ (ATPases 98.2 2.5E-05 5.5E-10 65.0 11.3 38 169-206 18-55 (151)
476 TIGR00235 udk uridine kinase. 98.1 2.1E-06 4.6E-11 78.4 4.3 40 168-209 4-43 (207)
477 PRK09435 membrane ATPase/prote 98.1 4.2E-06 9.2E-11 81.9 6.5 140 169-328 55-206 (332)
478 TIGR03881 KaiC_arch_4 KaiC dom 98.1 4.5E-05 9.8E-10 70.4 13.1 41 167-207 17-57 (229)
479 PLN03210 Resistant to P. syrin 98.1 8.3E-05 1.8E-09 84.3 17.1 41 165-205 202-243 (1153)
480 PRK04220 2-phosphoglycerate ki 98.1 1.2E-05 2.6E-10 77.3 8.9 100 106-210 22-128 (301)
481 PRK06793 fliI flagellum-specif 98.1 8.7E-06 1.9E-10 82.2 8.2 59 149-208 135-194 (432)
482 cd01125 repA Hexameric Replica 98.1 2.8E-05 6.1E-10 72.5 11.1 144 170-345 1-162 (239)
483 cd02025 PanK Pantothenate kina 98.1 3.2E-06 7E-11 78.2 4.4 39 172-210 1-41 (220)
484 TIGR02655 circ_KaiC circadian 98.0 1E-05 2.2E-10 83.4 7.5 145 167-344 18-169 (484)
485 PRK00889 adenylylsulfate kinas 98.0 7.2E-06 1.6E-10 72.6 5.2 43 168-210 2-44 (175)
486 PF07015 VirC1: VirC1 protein; 98.0 1.6E-05 3.5E-10 73.5 7.1 114 178-313 10-128 (231)
487 PF00488 MutS_V: MutS domain V 98.0 2.7E-05 5.9E-10 72.7 8.2 46 292-345 123-169 (235)
488 cd02023 UMPK Uridine monophosp 98.0 7.4E-06 1.6E-10 74.1 4.3 37 172-210 1-37 (198)
489 PRK09825 idnK D-gluconate kina 98.0 1.1E-05 2.4E-10 72.0 5.3 36 169-208 2-37 (176)
490 TIGR01420 pilT_fam pilus retra 97.9 6.8E-05 1.5E-09 74.0 10.8 37 168-204 120-157 (343)
491 PF13555 AAA_29: P-loop contai 97.9 1.4E-05 3E-10 58.8 4.2 35 164-198 16-51 (62)
492 PRK10463 hydrogenase nickel in 97.9 1.9E-05 4E-10 75.7 6.2 90 169-264 103-195 (290)
493 PRK05480 uridine/cytidine kina 97.9 1.5E-05 3.3E-10 72.7 5.4 40 168-209 4-43 (209)
494 PRK10078 ribose 1,5-bisphospho 97.9 1E-05 2.2E-10 72.6 4.1 36 170-208 2-37 (186)
495 PRK07196 fliI flagellum-specif 97.9 9.9E-06 2.2E-10 81.8 3.8 41 157-198 143-183 (434)
496 PRK00300 gmk guanylate kinase; 97.9 1.2E-05 2.5E-10 73.0 3.7 28 168-195 3-30 (205)
497 TIGR02788 VirB11 P-type DNA tr 97.8 1.1E-05 2.5E-10 78.3 3.6 40 164-203 138-177 (308)
498 cd01136 ATPase_flagellum-secre 97.8 4E-05 8.6E-10 74.8 7.4 49 158-207 58-106 (326)
499 TIGR02903 spore_lon_C ATP-depe 97.8 5E-05 1.1E-09 80.5 8.7 105 170-313 175-287 (615)
500 PRK09862 putative ATP-dependen 97.8 5.9E-06 1.3E-10 85.1 1.6 62 149-210 189-250 (506)
No 1
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-58 Score=437.37 Aligned_cols=307 Identities=45% Similarity=0.704 Sum_probs=276.2
Q ss_pred hhhhHHHHHHhhHHHHHHhHHH-HHHHHhhh-cccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHcCCCCChhh
Q 017380 65 KAKSDVEKIFSGFSKTRDNLAV-IDELLLYW-NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDD-ILAGKLKSGPD 141 (372)
Q Consensus 65 ~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~-~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 141 (372)
...+|+++++.+|+++++++.. +..++... ...+.++.+++||+.|+++||+++++.+|++.+++. ....+..+++.
T Consensus 29 ~~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~ 108 (340)
T COG0552 29 EKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKDEET 108 (340)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 3468999999999999999873 43333333 334568999999999999999999999999999994 66666667888
Q ss_pred HHHHHHHHHHHHhccCCCCCccc--eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH
Q 017380 142 IKDALKNSVLDLLTKKGNKTELQ--LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI 219 (372)
Q Consensus 142 ~~~~l~~~l~~~~~~~~~~~~is--l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~ 219 (372)
+++.+++.+...|.+....+... ..-+++.++++||+||+||||+++|||.+|+..+.+|.+.++||||++|.+|++.
T Consensus 109 v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~ 188 (340)
T COG0552 109 VKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEV 188 (340)
T ss_pred HHHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHH
Confidence 99999999999998643321111 1123588999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE 299 (372)
|+++.|+++ +.+.++.+|++++|++++.++.+++|.+|+||+||.|++.++|.||++..|.+-+.+...|+|++|+||+
T Consensus 189 w~er~gv~v-I~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 189 WGERLGVPV-ISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HHHHhCCeE-EccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 999999999 7766899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
|+|+|..+|++.|++++++||+|+||+|++++||+++.+.|.+++||.|+|.||.++||.+|++++||+.||+
T Consensus 268 ttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 268 TTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=8.4e-48 Score=372.49 Aligned_cols=314 Identities=47% Similarity=0.782 Sum_probs=276.6
Q ss_pred hhHHHHHHHhhhhhhHHHHHHhhHHHHHHhHH-HHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 017380 54 FFTRLGRLIKEKAKSDVEKIFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDIL 132 (372)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~ 132 (372)
||.++++.+.+...++|++++++|+++++.+. .+.+++. +....++.+++|++.|+++||+++++.+|++.+++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~ 78 (318)
T PRK10416 1 FFSWLKKKKKEKKEGWFERLKKGLSKTRENFGEGINGLFA--KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVK 78 (318)
T ss_pred ChhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 56778887777788999999999999999986 5777774 22334789999999999999999999999999999887
Q ss_pred cCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh
Q 017380 133 AGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~ 212 (372)
..+..+.+.+...+.+.+.+.++... .++.+.-.+|++++|+||||+|||||+++||+++.+.+++|.+.+.|++|.+
T Consensus 79 ~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~ 156 (318)
T PRK10416 79 RKNLKDPEELKELLKEELAEILEPVE--KPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAA 156 (318)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCcCC--ccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchh
Confidence 66666777888999999999987421 2333334578999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCc
Q 017380 213 ASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNE 292 (372)
Q Consensus 213 a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~ 292 (372)
+.+|+..|+.+.++++ +.+....+|...+++.+..+..+++|.+++||+|+.+....++.||.+..+.+.+.+...|++
T Consensus 157 a~eql~~~a~~~~i~~-~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~ 235 (318)
T PRK10416 157 AIEQLQVWGERVGVPV-IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHE 235 (318)
T ss_pred hHHHHHHHHHHcCceE-EEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCce
Confidence 9999999999999988 555566677777777777666788999999999999999999999999988776666778999
Q ss_pred eEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 293 ILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 293 ~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
++||+|+++|.+...++..|.+.++++|+|+||+|++.++|.++.+.+..++|+.|+++||.++||++|+|++|++.|++
T Consensus 236 ~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~ 315 (318)
T PRK10416 236 VLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315 (318)
T ss_pred EEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 99999998899999999999888999999999999999999999999999999999999999999999999999999985
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-46 Score=366.50 Aligned_cols=268 Identities=38% Similarity=0.686 Sum_probs=248.0
Q ss_pred ccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHHHhccCCCCCccceeccCCe
Q 017380 96 LADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171 (372)
Q Consensus 96 ~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~ 171 (372)
++++++.++||+.+|+++||+..++.++++++++...+.+ +.+.+.+..++.++|.+.+|. ....+++..+++.
T Consensus 24 E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~--~~~~~~l~~~~P~ 101 (451)
T COG0541 24 EKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGG--ENSELNLAKKPPT 101 (451)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCC--CCcccccCCCCCe
Confidence 3567899999999999999999999999999999887654 345677889999999999996 2345666667899
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
+|.+||..||||||+..|||.+|+..+.+|.+.++|+||++|++|+++++++.++|+ +....+.+|..++..+++.++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-f~~~~~~~Pv~Iak~al~~ak~ 180 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-FGSGTEKDPVEIAKAALEKAKE 180 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCce-ecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 5556678899999999999988
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
..+|.+|+||+||.+.+..++.||-.....+ +|+|++||+|+++|+|+.++++.|++.+++|||||||+|++++
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~------~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaR 254 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVI------NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDAR 254 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhc------CCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCc
Confidence 8899999999999999999999999888765 9999999999999999999999999999999999999999999
Q ss_pred ceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 332 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 332 gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
||+.+++.|.++.||.|+|+||+++||++|+|++|+++|||
T Consensus 255 GGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG 295 (451)
T COG0541 255 GGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG 295 (451)
T ss_pred chHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC
Confidence 99999999999999999999999999999999999999986
No 4
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.2e-41 Score=330.76 Aligned_cols=268 Identities=42% Similarity=0.695 Sum_probs=232.7
Q ss_pred cccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHHHhccCCCCCccce-----
Q 017380 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKS----GPDIKDALKNSVLDLLTKKGNKTELQL----- 165 (372)
Q Consensus 95 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~isl----- 165 (372)
+.+++++.+++|+..|+++||+++++.+|++.+++.+...+... .+.++..+++.|...++... .+++
T Consensus 59 ~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~~~ 135 (336)
T PRK14974 59 KEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD---LFDLIEEIK 135 (336)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc---chhhhhhhh
Confidence 34567899999999999999999999999999999876544432 33467778888888776432 1221
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHH
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQA 245 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 245 (372)
.-.++.+++|+||||+||||++++|+..+...+.+|.+.+.|+||.++.+|++.|+..+++++ +....+.++..+++++
T Consensus 136 ~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v-~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 136 SKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV-IKHKYGADPAAVAYDA 214 (336)
T ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCce-ecccCCCCHHHHHHHH
Confidence 123468999999999999999999999998888899999999999999999999999999988 5555666777778888
Q ss_pred HHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhh
Q 017380 246 VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTK 325 (372)
Q Consensus 246 ~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltk 325 (372)
+......++|.+++||+|+.+....++.+|....+.+ +|++++||+|.++|.|...+++.|.+.++++|+|+||
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~------~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTK 288 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVT------KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhh------CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEee
Confidence 7776667789999999999999999999998876643 7999999999988999999999998889999999999
Q ss_pred ccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 326 LDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 326 ld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
+|++.++|+++.+.|..++|+.|+++||.|+||.+|+|++|+++||+
T Consensus 289 lD~~~~~G~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 289 VDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred ecCCCCccHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999985
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=1.7e-41 Score=337.40 Aligned_cols=268 Identities=31% Similarity=0.505 Sum_probs=234.7
Q ss_pred ccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCccceeccCCe
Q 017380 96 LADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171 (372)
Q Consensus 96 ~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~ 171 (372)
.+++++.+++++..|+++||+++++.+|++++++.....+. .+.+.+...+.+.|.+.+++.. ..+++.-.++.
T Consensus 24 e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~--~~~~~~~~~~~ 101 (429)
T TIGR01425 24 EEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGV--EAFTPKKGKQN 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCC--ccccccCCCCe
Confidence 35678999999999999999999999999999998754443 3345678889999999887532 23444445578
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
+++++|++||||||++.+||.+++..+.+|.+.++|+||+++.+|++.|+++.++|+ +......+|...+.+.+.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-YGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-EeecCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998777899999999999999999999999999998 4444445677777777777666
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
.++|.+++||+|+.+.+..++.||....+.+ +|++++||+|.+.|++...+++.|++.++++|+|+||+|++++
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~------~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI------QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhc------CCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCCC
Confidence 7899999999999999999999998887643 8999999999999999999999999889999999999999999
Q ss_pred ceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 332 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 332 gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
||++|.+.+..++||.|+++||.++|+++|+|+.++++|++
T Consensus 255 gG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg 295 (429)
T TIGR01425 255 GGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG 295 (429)
T ss_pred ccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc
Confidence 99999999999999999999999999999999999999985
No 6
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-40 Score=317.51 Aligned_cols=265 Identities=38% Similarity=0.601 Sum_probs=238.9
Q ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEE
Q 017380 99 TDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKS----GPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVL 174 (372)
Q Consensus 99 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~ 174 (372)
++..++||+++|+++||++.++.++.+++++.+...+... ...+..++.+.|.+.+++. ...+.+...++.|+.
T Consensus 28 l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~--~~~~~~~K~kpsVim 105 (483)
T KOG0780|consen 28 LNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPG--KSALQPKKGKPSVIM 105 (483)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCC--CcccccccCCCcEEE
Confidence 4678999999999999999999999999999887655443 3445666777788877752 344555666788999
Q ss_pred EEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhch
Q 017380 175 IVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGF 254 (372)
Q Consensus 175 lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (372)
+||.+|+||||++.++|.+|+..|.++.+++.||||++|.+|++.++.+.++|+ +......+|..++.+.+...+.+++
T Consensus 106 fVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~-ygsyte~dpv~ia~egv~~fKke~f 184 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF-YGSYTEADPVKIASEGVDRFKKENF 184 (483)
T ss_pred EEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee-EecccccchHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999 5566778899999999999999999
Q ss_pred HHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 255 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 255 d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
|.+|+||.||.+....++.|+-...+++ +|+++++|+|++.|+....|++.|++.++++++||||+|+.++||.
T Consensus 185 dvIIvDTSGRh~qe~sLfeEM~~v~~ai------~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGg 258 (483)
T KOG0780|consen 185 DVIIVDTSGRHKQEASLFEEMKQVSKAI------KPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGG 258 (483)
T ss_pred cEEEEeCCCchhhhHHHHHHHHHHHhhc------CCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCc
Confidence 9999999999999888888887766655 8999999999999999999999999999999999999999999999
Q ss_pred eEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 335 VVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 335 vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.|++....+.||.|||+||.++||++|+|+.||++|||
T Consensus 259 AlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLG 296 (483)
T KOG0780|consen 259 ALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLG 296 (483)
T ss_pred eeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhc
Confidence 99999999999999999999999999999999999985
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=329.21 Aligned_cols=290 Identities=35% Similarity=0.620 Sum_probs=242.3
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHH
Q 017380 70 VEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDA 145 (372)
Q Consensus 70 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~ 145 (372)
|+.|.+.|+++.+++..- ...+.+++++.+++|+..|+++||+++++.+|++.+++.....+. .+.+.+..+
T Consensus 2 f~~l~~~l~~~~~~l~~~----~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 77 (433)
T PRK10867 2 FESLSDRLSSAFKKLRGK----GRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKI 77 (433)
T ss_pred hHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHH
Confidence 344555555544444310 011234567899999999999999999999999999988765433 345668888
Q ss_pred HHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 146 LKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+.+.|.+.++... .++++.-.++.+++++||+|+||||++.+||..+... +.+|.+.++|+||+++.+|++.|++..
T Consensus 78 v~~el~~~l~~~~--~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~ 155 (433)
T PRK10867 78 VNDELVEILGGEN--SELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI 155 (433)
T ss_pred HHHHHHHHhCCCc--ceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc
Confidence 9999999997532 2344544567899999999999999999999999877 789999999999999999999999999
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD 304 (372)
++++ +......+|.....+++..+...++|.+++||+|+.+.+...+.+|....+.+ .|++++||+|+++|+|
T Consensus 156 gv~v-~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v------~p~evllVlda~~gq~ 228 (433)
T PRK10867 156 GVPV-FPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAV------NPDEILLVVDAMTGQD 228 (433)
T ss_pred CCeE-EecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhh------CCCeEEEEEecccHHH
Confidence 9998 44434557777777777766667799999999999999899999998776643 8999999999988999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
...+++.|++.++++|+|+||+|++.+||.++.+.+..++|+.|+++||+++||++|+|++|+++||+
T Consensus 229 av~~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg 296 (433)
T PRK10867 229 AVNTAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG 296 (433)
T ss_pred HHHHHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC
Confidence 99999999988999999999999999999999999999999999999999999999999999999985
No 8
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=1.5e-39 Score=308.88 Aligned_cols=270 Identities=48% Similarity=0.787 Sum_probs=236.3
Q ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcC
Q 017380 99 TDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGV 178 (372)
Q Consensus 99 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGp 178 (372)
+++++++|+..|+++||+++++.+|++.+++.....+..+.+.+...+.+.+...++... ..+++...++.+++++||
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~--~~~~~~~~~~~vi~l~G~ 80 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETD--LELIVEENKPNVILFVGV 80 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccc--hhhcccCCCCeEEEEECC
Confidence 478999999999999999999999999999887766666667788888888888886531 123344456899999999
Q ss_pred CCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHH
Q 017380 179 NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVL 258 (372)
Q Consensus 179 NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl 258 (372)
+|+||||++.+||..+...+++|.+.+.|+||.++.+|++.|+++.++++ +......++....++.+.....+++|.++
T Consensus 81 ~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~-~~~~~~~dp~~~~~~~l~~~~~~~~D~Vi 159 (272)
T TIGR00064 81 NGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV-IKQKEGADPAAVAFDAIQKAKARNIDVVL 159 (272)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE-EeCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999998888899999999999999999999999999887 45555566767667777665667799999
Q ss_pred HHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 259 CDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 259 ~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
+||+|+.+.+...+.||....+.+.+.+...|++++||+|.++|.|...+...|.+.++++|+|+||+|++.++|.++.+
T Consensus 160 IDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~ 239 (272)
T TIGR00064 160 IDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSI 239 (272)
T ss_pred EeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHH
Confidence 99999999999999999999886655556679999999999889998888888888899999999999999999999999
Q ss_pred eeccCCceeeeccCcccCCCCCCCHHHHHHHhc
Q 017380 339 VDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 371 (372)
Q Consensus 339 sH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~ 371 (372)
.+..++|+.|+++||.++||++|+|++|++.||
T Consensus 240 ~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 240 AYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 999999999999999999999999999999886
No 9
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=7.9e-38 Score=313.41 Aligned_cols=264 Identities=34% Similarity=0.612 Sum_probs=225.8
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAV 172 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~v 172 (372)
+++++.+++++..|+++||+++++.++++++++.....+ ..+.+.+...+.+.|...++.... .+++. .++.+
T Consensus 21 ~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~--~~~~~-~~p~v 97 (437)
T PRK00771 21 KTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETE--PLVLP-LKPQT 97 (437)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCcc--ccccC-CCCeE
Confidence 456789999999999999999999999999998876543 334456678888899998876432 22232 46789
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (372)
++++|++|+||||++++||..+...+.+|.+.+.|++|.++.+|++.|+...++|++ ......++...+.+++....
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~-~~~~~~d~~~i~~~al~~~~-- 174 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY-GDPDNKDAVEIAKEGLEKFK-- 174 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE-ecCCccCHHHHHHHHHHHhh--
Confidence 999999999999999999999987778999999999999999999999999999884 33333455565666665543
Q ss_pred chHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccc
Q 017380 253 GFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARG 332 (372)
Q Consensus 253 ~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~g 332 (372)
..|.+++||+|+.+.....+.||......+ .|++++||+|.++|.|...+++.|.+.++++|+|+||+|++++|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~------~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~~a~~ 248 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAV------KPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKG 248 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHh------cccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccCCCcc
Confidence 348899999999999999999998876644 78999999999889999999999988899999999999999999
Q ss_pred eeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 333 GCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 333 g~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
|+++.+.+..++|+.|+|+||.|+||++|+|++|+++||+
T Consensus 249 G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg 288 (437)
T PRK00771 249 GGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288 (437)
T ss_pred cHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999985
No 10
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=8.1e-38 Score=312.57 Aligned_cols=267 Identities=38% Similarity=0.688 Sum_probs=230.4
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAV 172 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~v 172 (372)
+++++.+++|+..|+++||+.+++.+|++.+++...+.+ ..+.+.+..++.+.|.+.++... ..+++.-.++.+
T Consensus 24 ~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~--~~~~~~~~~p~v 101 (428)
T TIGR00959 24 KNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGEN--ASLNLAKKPPTV 101 (428)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCC--cccccCCCCCEE
Confidence 456789999999999999999999999999998876433 23456678889999999987542 234444345789
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh-hcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLK-NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~-~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
++++|++|+||||++.+||..+. ..+.+|.+.++|+||+++.+|++.|+...++|++ ......+|.....+++.....
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-~~~~~~~P~~i~~~al~~~~~ 180 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-ALGKGQSPVEIARRALEYAKE 180 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-ecCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999876 4677999999999999999999999999999984 333445666666677766656
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
.++|.+++||+|+.+.+...+.+|....+.+ +|++++||+|.++|.|...+++.|.+.++++|+|+||+|++.+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~------~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEIL------NPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDAR 254 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhh------CCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCccc
Confidence 7789999999999998888999998776644 7999999999988999999999998889999999999999999
Q ss_pred ceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 332 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 332 gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
+|.++.+.+.+++|+.|+++||+++||++|+|++|+++|||
T Consensus 255 ~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg 295 (428)
T TIGR00959 255 GGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG 295 (428)
T ss_pred ccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999985
No 11
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.3e-37 Score=326.07 Aligned_cols=282 Identities=24% Similarity=0.317 Sum_probs=227.0
Q ss_pred HHHHHHhhHHHHHHhHHH-HHHHHhhhcc-cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 017380 69 DVEKIFSGFSKTRDNLAV-IDELLLYWNL-ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDAL 146 (372)
Q Consensus 69 ~~~~~~~~l~~~~~~l~~-~~~~~~~~~~-~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 146 (372)
.++.++++|.++|+.|.. +.+++..|.. ...++..+++++.|+++||+++++.+|++.+.+.. +.+++...+
T Consensus 91 ~~~~l~~El~~lk~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~------~~~~~~~~l 164 (767)
T PRK14723 91 AIGDLRGELQSMRGMLERQLAGLLWAAGEVAGRDPLRASLFRWLLGAGFSGQLARALLERLPVGY------DRPAAMAWI 164 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC------CHHHHHHHH
Confidence 456777888888887763 5555544442 23477889999999999999999999999986532 335567778
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-C-CeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-G-AKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~-G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+.|.+.+. .+++.++.+.+|++++||||||+|||||+.+|++.+... + .+|.+.+.|+||+++.+|++.|++..
T Consensus 165 ~~~L~~~l~---il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~ 241 (767)
T PRK14723 165 RNELATHLP---VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL 241 (767)
T ss_pred HHHHHHHhh---hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC
Confidence 888887764 244566667779999999999999999999999999754 4 38999999999999999999999999
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD 304 (372)
++++++.. ++.. +++.+.. ..++|.+++||+|+++.+...+.+|+.... ...|.+++||||.|++.+
T Consensus 242 gvpv~~~~----~~~~-l~~al~~--~~~~D~VLIDTAGRs~~d~~l~eel~~l~~------~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 242 GVPVHAVK----DAAD-LRFALAA--LGDKHLVLIDTVGMSQRDRNVSEQIAMLCG------VGRPVRRLLLLNAASHGD 308 (767)
T ss_pred CCCccccC----CHHH-HHHHHHH--hcCCCEEEEeCCCCCccCHHHHHHHHHHhc------cCCCCeEEEEECCCCcHH
Confidence 99884333 2322 4555553 346788999999999998888888876543 347999999999976654
Q ss_pred -HHHHHHHHhhh--cCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 305 -MLPQAREFNDV--VGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 305 -~~~~~~~~~~~--~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
.....+.|... ++++|+||||+||+.++|.++.+.+..++||.|+++||+| +||++|++++|++.+|+
T Consensus 309 ~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 309 TLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred HHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence 44455667643 3899999999999999999999999999999999999999 99999999999999874
No 12
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=5.4e-36 Score=302.06 Aligned_cols=281 Identities=25% Similarity=0.323 Sum_probs=214.3
Q ss_pred HHHHHHhhHHHHHHhHH-HHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017380 69 DVEKIFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147 (372)
Q Consensus 69 ~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 147 (372)
..+.++++|.++|+.|. .+.++++. .....++.++++++.|+++||+++++.+|++.+++.. ..+..+.+++
T Consensus 164 ~~~~l~~El~~lr~~l~~~~~~l~~~-~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~------~~~~~~~~l~ 236 (484)
T PRK06995 164 VNDTVMQELRSLRGMLEEQLASLAWG-ERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGD------DAEAALDWVQ 236 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhh------chhHHHHHHH
Confidence 34667888888888886 35554421 2223478899999999999999999999999997653 2234566777
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC-C-eEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG-A-KILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~-G-~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+.+.+.+.. +++.++.+.+|+|++||||||||||||+++|++.+.... + +|.+...|+||+++.+|++.|++..+
T Consensus 237 ~~l~~~l~~---~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 237 SALAKNLPV---LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred HHHHHHHhh---ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 777666642 334555567899999999999999999999999997653 3 79999999999999999999999999
Q ss_pred cceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNM 305 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~ 305 (372)
+++..... ..+... .+ ....+.+.+++||+|+.+.+.....++.. +.. ...|.+++|+||++++.+.
T Consensus 314 Vpv~~~~~-~~Dl~~----aL--~~L~d~d~VLIDTaGr~~~d~~~~e~~~~----l~~--~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 314 VPVHAVKD-AADLRL----AL--SELRNKHIVLIDTIGMSQRDRMVSEQIAM----LHG--AGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred CCeeccCC-chhHHH----HH--HhccCCCeEEeCCCCcChhhHHHHHHHHH----Hhc--cCCCCeeEEEEeCCCcHHH
Confidence 98743222 222111 11 12345678889999999876543333322 111 1237788999999766665
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
..+...+....+++++|+||+|++.++|.++.+.++.++|+.|+++||.| +||++|+++.|++.+|+
T Consensus 381 l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 381 LNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 55444443479999999999999999999999999999999999999999 99999999999999874
No 13
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=2.2e-35 Score=291.73 Aligned_cols=279 Identities=22% Similarity=0.329 Sum_probs=208.7
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 017380 69 DVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKN 148 (372)
Q Consensus 69 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 148 (372)
.++.+.+++..+++.+.. ......++.++++++.|+++||++.++.+|++.+++.....+..+.+.++..+.+
T Consensus 84 ~~~~l~~el~~lk~~l~~-------~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 156 (388)
T PRK12723 84 SIEDVLKEVKSLKNELAH-------KKEEINHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVII 156 (388)
T ss_pred HHHHHHHHHHHHHHHHHh-------hccccCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 345555555555544331 1111236789999999999999999999999999887655444455667777777
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh----cCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN----EGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~----~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+.+.+..... . .....+.+++++||||+|||||+++||..+.. .+.+|.+.+.|+||+++.+|++.|++.+
T Consensus 157 ~l~~~i~~~~~---~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l 232 (388)
T PRK12723 157 YIAKTIKCSGS---I-IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 (388)
T ss_pred HHHHHhhccCc---c-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC
Confidence 77666643211 1 11134679999999999999999999998874 3679999999999999999999999999
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD 304 (372)
++|+...... ..+...+.. ..++|.+++||+|+.+.+...+.+|......+ ..|.+++||||.|++.+
T Consensus 233 gvpv~~~~~~-----~~l~~~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~-----~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 233 GIPVKAIESF-----KDLKEEITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNAC-----GRDAEFHLAVSSTTKTS 300 (388)
T ss_pred CcceEeeCcH-----HHHHHHHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhc-----CCCCeEEEEEcCCCCHH
Confidence 9987433321 112233332 35689999999999986544444554333221 23558899999987765
Q ss_pred HHHHHHHHhh--hcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 305 MLPQAREFND--VVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 305 ~~~~~~~~~~--~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
... ++++. .++++++|+||+|++.++|+++.+.+..++|+.|+++||.| +||.+|+++.|++.|++
T Consensus 301 ~~~--~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g 369 (388)
T PRK12723 301 DVK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKING 369 (388)
T ss_pred HHH--HHHHHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcC
Confidence 444 33333 48899999999999999999999999999999999999999 89999999999999875
No 14
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=2.1e-35 Score=287.40 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=223.3
Q ss_pred hHHHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017380 68 SDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147 (372)
Q Consensus 68 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 147 (372)
..|+.++.++.++.+++. .+| |.... ...|+++.|.+.||+..++.+|++.+.+..........+++...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~--~~~---~~~~~---~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~ 188 (407)
T PRK12726 117 EELSAMRLELAALNRELA--VKM---REERE---QNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFV 188 (407)
T ss_pred HHHHHHHHHHHHHHHHHH--HHh---hhhhc---ccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 456677778888777776 344 64221 1237899999999999999999999987755443334555666666
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.|...+... -++.+.+|++++|+||+||||||++.+||..+...+.+|.+.+.|+||.++.+|++.|++..++|
T Consensus 189 ~~L~~~l~~~-----~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 189 PYLSGKLAVE-----DSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred HHhcCcEeeC-----CCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 6666655432 23456789999999999999999999999988777889999999999999999999999999998
Q ss_pred eeEeccccccHHHHHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
++... ++.. +.+++.... ..++|.+++||+|+.+.+...+.+|+.....+ .|++++||++. +...|.
T Consensus 264 v~~~~----dp~d-L~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~------~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 264 LIVAT----SPAE-LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV------HPDLTCFTFSSGMKSADV 332 (407)
T ss_pred EEecC----CHHH-HHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhcc------CCceEEEECCCcccHHHH
Confidence 84332 2332 345554433 24679999999999999999999998876543 78888899988 555666
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
....+.|. .++++++|+||+|++.++|+++.+.+..++|+.|+++||.| +|+..++++.+++.+++
T Consensus 333 ~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~ 399 (407)
T PRK12726 333 MTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVG 399 (407)
T ss_pred HHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhc
Confidence 66555565 79999999999999999999999999999999999999999 78999999999999874
No 15
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=1.4e-36 Score=275.59 Aligned_cols=196 Identities=38% Similarity=0.627 Sum_probs=174.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG 249 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
+.++++|||+|+||||++.|||..++..+.+|.+...|+||+++.+|++.|++.+++|+ .......++...+.+.+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF-YVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE-EESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc-chhhcchhhHHHHHHHHHHH
Confidence 47899999999999999999999999888899999999999999999999999999998 44444456777777777776
Q ss_pred hhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccc
Q 017380 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGS 329 (372)
Q Consensus 250 ~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t 329 (372)
..+++|.+++||+|+.+.+...+.+|....+.+ .|.+++||+|.+.+.+...+...|.+.++++++|+||+||+
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCC
Confidence 667889999999999999999999998877654 89999999999889888888888888899999999999999
Q ss_pred ccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 330 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 330 ~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.++|+++.+.+..++|+.|+++||.|+||++|++++|+++|||
T Consensus 154 ~~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 154 ARLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp STTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred CCcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999986
No 16
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.4e-34 Score=279.64 Aligned_cols=256 Identities=19% Similarity=0.335 Sum_probs=209.2
Q ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcC
Q 017380 99 TDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGV 178 (372)
Q Consensus 99 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGp 178 (372)
....+..+++.|++.||++.++.+|++.+..........+..++...+.+.+...+... .. + ..++.+++|+||
T Consensus 176 ~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~~-~-~~~~~vI~LVGp 249 (436)
T PRK11889 176 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE----NV-F-EKEVQTIALIGP 249 (436)
T ss_pred cchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccc----cc-c-ccCCcEEEEECC
Confidence 35677889999999999999999999998765544333445566677777776666532 11 1 234679999999
Q ss_pred CCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh-hchHHH
Q 017380 179 NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE-QGFDIV 257 (372)
Q Consensus 179 NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v 257 (372)
|||||||++.+||+.+...+.+|.+...|++|+++.+|++.|++..++++.... ++.. +.+.+..... .++|.+
T Consensus 250 tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~----d~~~-L~~aL~~lk~~~~~DvV 324 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR----DEAA-MTRALTYFKEEARVDYI 324 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC----CHHH-HHHHHHHHHhccCCCEE
Confidence 999999999999999987778999999999999999999999999999984332 2222 2344544332 358999
Q ss_pred HHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeE
Q 017380 258 LCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVV 336 (372)
Q Consensus 258 l~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi 336 (372)
++||+|+.+.....+.+|....+. ..|++++||||+ +.+.|...+.+.|.. ++++++|+||+|++.++|+++
T Consensus 325 LIDTaGRs~kd~~lm~EL~~~lk~------~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iL 397 (436)
T PRK11889 325 LIDTAGKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELL 397 (436)
T ss_pred EEeCccccCcCHHHHHHHHHHHhh------cCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHH
Confidence 999999999888888888555442 368899999999 566788888889984 999999999999999999999
Q ss_pred eeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 337 SVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 337 ~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
.+.+..++|+.|+++||.| +||..++++.+++.+++
T Consensus 398 ni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg 434 (436)
T PRK11889 398 KIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred HHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 9999999999999999999 89999999999999875
No 17
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-34 Score=258.35 Aligned_cols=192 Identities=18% Similarity=0.255 Sum_probs=162.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.|.||...+++++|+++.+|++++|+||+||||||+|++|.++..|++|+|.++|.+..... .+....+..|+
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~~~~~R~~vGm- 81 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---DILKLRRKVGM- 81 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---hHHHHHHhcCe-
Confidence 47889999999999999999999999999999999999999999999999999999886653322 44555566666
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+++..+.+|...+.+++..+ ..+.....+++.+|+.+..+.+|.+|||||+ +|||||+.+|+ +
T Consensus 82 --VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~--v 157 (240)
T COG1126 82 --VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK--V 157 (240)
T ss_pred --ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC--E
Confidence 77888888877766654322 1223334456899999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+++|| |+.|||....+++. ++..+. ..|.|+++|||+++++ +.|+..|..+++
T Consensus 158 mLFDEPTSALDPElv~EVL~--------vm~~LA--~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLD--------VMKDLA--EEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred EeecCCcccCCHHHHHHHHH--------HHHHHH--HcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 99999 99999999988888 999997 6799999999999997 889999977743
No 18
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=8.9e-33 Score=271.24 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=211.1
Q ss_pred HHHHhhHHHHHHhHHHHHHHHhhhcc-cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 017380 71 EKIFSGFSKTRDNLAVIDELLLYWNL-ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNS 149 (372)
Q Consensus 71 ~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (372)
+.+++++..+|+.|...-..+ .|.. ...++....+.+.|++.||++.++.+|++.+.+... ..+.+....++.+.
T Consensus 44 ~~~~~El~~lr~ll~~~~~~~-~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~ 119 (374)
T PRK14722 44 DTVMQELGSLRELMEEQFAGL-MWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEG---YDTLDAAADWAQSV 119 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcc---cCCHHHHHHHHHHH
Confidence 355666666666654321111 2432 223567799999999999999999999998865321 12233445555555
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-C-CeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-G-AKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~-G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+...+. .+++.++.+.+|++++|+||||+|||||+.+|++.+... + .+|.+...|+||+++.+|++.|++.++++
T Consensus 120 l~~~l~---~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 120 LAANLP---VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred HHhcch---hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 544442 344556667889999999999999999999999987643 4 48999999999999999999999999998
Q ss_pred eeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHH
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~ 307 (372)
+...... .+.. ..+. ...+.+.+++||+|+.+.+.....+|..... ...|.+++|||+.|++.+...
T Consensus 197 ~~~~~~~-~~l~----~~l~--~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~------~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 197 VHAVKDG-GDLQ----LALA--ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHG------ADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred eEecCCc-ccHH----HHHH--HhcCCCEEEEcCCCCCcccHHHHHHHHHHhc------cCCCCeEEEEecCccChHHHH
Confidence 8443332 2221 1222 2345688899999999988877777765422 236778899999988877655
Q ss_pred H-HHHHhhhc--------CchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhc
Q 017380 308 Q-AREFNDVV--------GITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIF 371 (372)
Q Consensus 308 ~-~~~~~~~~--------~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~ 371 (372)
+ .+.|.... +++++|+||+||+.++|.++.+.+..++|+.|+++||+| |||.+++++.+++.+|
T Consensus 264 evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~ 337 (374)
T PRK14722 264 EVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAF 337 (374)
T ss_pred HHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHh
Confidence 4 46666442 699999999999999999999999999999999999999 8999999999999876
No 19
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.6e-33 Score=276.99 Aligned_cols=276 Identities=24% Similarity=0.314 Sum_probs=203.7
Q ss_pred HHHhhHHHHHHhHHHHHHHHhhhc-ccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 017380 72 KIFSGFSKTRDNLAVIDELLLYWN-LADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSV 150 (372)
Q Consensus 72 ~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l 150 (372)
.+.+++..+|+.+...-..+ .|+ ....++....+.+.|+++||+++++.+|++.+.+.... +.....+++.|
T Consensus 103 ~l~~Ei~~lr~~l~~~~~~~-~~~~~~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~------~~~~~~~~~~l 175 (420)
T PRK14721 103 NIMQEIRAMRQMLEEQLTTM-GWSNFSQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDF------EQSLKKTISLL 175 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhccccccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhh------hhHHHHHHHHH
Confidence 45566666666554222211 132 22335666889999999999999999999998775432 12233444445
Q ss_pred HHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc--CCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 151 ~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~--~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
...+...... . .+.+|++++||||||+|||||+++|++.+... ..+|.+...|++|+++.+|+..|++.+++++
T Consensus 176 ~~~l~~~~~~---~-~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 176 TLNLRTIGGD---E-IIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred HHHHHhcCCc---c-ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 4444321111 1 13579999999999999999999999976432 2467888899999999999999999999988
Q ss_pred eEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCC-CHHH
Q 017380 229 VVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGL-NMLP 307 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsgl-D~~~ 307 (372)
...... .+ ....+. ...+.+.+++||+|+.+.....+.+|+.... ...|.+++||||.|++. |...
T Consensus 252 ~~v~~~-~d----l~~al~--~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~------~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 252 RSIKDI-AD----LQLMLH--ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQ------CGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ecCCCH-HH----HHHHHH--HhcCCCEEEecCCCCCcchHHHHHHHHHHhc------cCCCceEEEEEcCCCCHHHHHH
Confidence 433221 11 112222 2456788899999999988888888776432 23677899999996555 4544
Q ss_pred HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 308 ~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
....|. .++++++|+||+|++.++|.++.+.++.++|+.|+++||.| +||.+++++.|++.+|+
T Consensus 319 ~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 319 VISAYQ-GHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred HHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 455554 79999999999999999999999999999999999999999 89999999999999874
No 20
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.3e-32 Score=268.81 Aligned_cols=261 Identities=21% Similarity=0.328 Sum_probs=204.6
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCcccee-ccCCeEEEE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLG-YRKPAVVLI 175 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~-i~~g~vi~l 175 (372)
++.++.++++++.|+++||+++++.+|++.+.+.....+....+.+...+.+.|...+..... .++-. ..++.+++|
T Consensus 151 ~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~--~~~~~g~~~~~vi~l 228 (432)
T PRK12724 151 KEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSD--LFSGTGKNQRKVVFF 228 (432)
T ss_pred hhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhcccchh--hhhhcccCCCeEEEE
Confidence 455788899999999999999999999999987765444444455677777777776642111 01110 135789999
Q ss_pred EcCCCCcHHHHHHHHHhhhh-hcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhch
Q 017380 176 VGVNGGGKTTSLGKLAYRLK-NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGF 254 (372)
Q Consensus 176 vGpNGsGKTTll~~Lag~l~-~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (372)
+||+||||||++.+||..+. ..+.+|.+.+.|++|.++.+|++.|++..++++..... ..+........++
T Consensus 229 vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~--------~~~l~~~l~~~~~ 300 (432)
T PRK12724 229 VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD--------IKKFKETLARDGS 300 (432)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH--------HHHHHHHHHhCCC
Confidence 99999999999999998764 45679999999999999999999999999998732111 1222222233567
Q ss_pred HHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC-HHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 255 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN-MLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 255 d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD-~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
|.+++||+|+.+.....+.+|....+.+. ..+|.+++||||.+++.+ .......| +.++++++|+||+|++.++|
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~---~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhc---CCCCCeEEEEEeCCCCHHHHHHHHHHh-cCCCCCEEEEEcccCCCCcc
Confidence 88999999999988888888866554321 124678999999988885 44444555 68999999999999999999
Q ss_pred eeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhc
Q 017380 334 CVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIF 371 (372)
Q Consensus 334 ~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~ 371 (372)
++|.+.+..++|+.|+++||.| +||.+++++.+++.++
T Consensus 377 ~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 377 SFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 9999999999999999999999 8999999999998875
No 21
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.98 E-value=3.5e-32 Score=265.24 Aligned_cols=192 Identities=31% Similarity=0.458 Sum_probs=166.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHH
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQ 244 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~ 244 (372)
+.++.+++||||+|+|||||++|||+.+. ....+|.++..|+||++|+||++.|++.+++|+.+...+... .+
T Consensus 200 ~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el-----~~ 274 (407)
T COG1419 200 VEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL-----AE 274 (407)
T ss_pred cccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHH-----HH
Confidence 35689999999999999999999999998 466799999999999999999999999999999766554322 22
Q ss_pred HHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHh
Q 017380 245 AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLIL 323 (372)
Q Consensus 245 ~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiil 323 (372)
++. ..++.|.+|+||+|+++++..++.+|..-... ..+.+++|+|+. +...|.......|. .++++|+|+
T Consensus 275 ai~--~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~------~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~ 345 (407)
T COG1419 275 AIE--ALRDCDVILVDTAGRSQYDKEKIEELKELIDV------SHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIF 345 (407)
T ss_pred HHH--HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhc------cccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEE
Confidence 332 23567999999999999999888777665542 267788999999 66778888888887 799999999
Q ss_pred hhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 324 TKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 324 tkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
||+|||..-|.++++.+..++|+.|+++||.| +||..++++.+|+++++
T Consensus 346 TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 346 TKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred EcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence 99999999999999999999999999999999 89999999999999874
No 22
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.98 E-value=1.5e-31 Score=268.42 Aligned_cols=281 Identities=26% Similarity=0.394 Sum_probs=219.4
Q ss_pred hHHHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017380 68 SDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147 (372)
Q Consensus 68 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 147 (372)
..++.+++++.++|+.|..+..-. ......++.++++++.|+++||++.++.+|++.+.+....... .++..+.
T Consensus 130 ~~~~~l~~el~~lk~~l~~~~~~~--~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~----~~~~~~~ 203 (424)
T PRK05703 130 KELDELRDELKELKNLLEDQLSGL--RQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER----TAWRYLL 203 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHH
Confidence 456778888888888775322111 1234568899999999999999999999999999876532111 3567777
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-h-cCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-N-EGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~-~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+.|.+.+.... ..+ +.+|++++|+||||+||||++.+||+.+. . .+.+|.+.+.|++|.++.+|++.|++..+
T Consensus 204 ~~L~~~l~~~~----~~~-~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~ 278 (424)
T PRK05703 204 ELLANMIPVRV----EDI-LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG 278 (424)
T ss_pred HHHHHHhCccc----ccc-ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC
Confidence 88888776432 223 45688999999999999999999999887 3 45689999999999999999999999999
Q ss_pred cceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCC-C
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGL-N 304 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsgl-D 304 (372)
+|+...... ..+...+.. ..++|.+++||+|+.+.+...+.+|...... ...|.+++|||+.+.+. |
T Consensus 279 vp~~~~~~~-----~~l~~~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~-----~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 279 IPVEVVYDP-----KELAKALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEF-----SGEPIDVYLVLSATTKYED 346 (424)
T ss_pred CceEccCCH-----HhHHHHHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc-----cCCCCeEEEEEECCCCHHH
Confidence 988443322 112233332 2457889999999999888777777665431 23677889999996665 5
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
.......|. .++++++|+||+|++..+|.++.+.++.++|+.|+++||.| +||.+|+++.|++.||+
T Consensus 347 l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 347 LKDIYKHFS-RLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred HHHHHHHhC-CCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhc
Confidence 555556665 78999999999999999999999999999999999999999 99999999999999874
No 23
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.6e-32 Score=265.63 Aligned_cols=270 Identities=34% Similarity=0.545 Sum_probs=230.3
Q ss_pred cccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHHHhccCCCC---Cccc--e
Q 017380 95 NLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG----PDIKDALKNSVLDLLTKKGNK---TELQ--L 165 (372)
Q Consensus 95 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~---~~is--l 165 (372)
+.+|+.++++.+.++|+...|.++.|.+||+.+...+.++++.+. ..+++.+.+.|++.+.+...+ .+|. -
T Consensus 294 ~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~sVDlLRdI~sar 373 (587)
T KOG0781|consen 294 SEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRSVDLLRDIMSAR 373 (587)
T ss_pred cHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Confidence 356789999999999999999999999999999998877766554 457777888888888654322 2221 0
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh------CcceeEeccccccHH
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT------GCEIVVAEGEKAKAS 239 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~------~v~~~~~~~~~~~~~ 239 (372)
.-+.+.++.|||+||+||||.|++||.++....-+|+|.++||||.+|+||++.+.+++ .++. +...++.+++
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~l-fekGYgkd~a 452 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVEL-FEKGYGKDAA 452 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHH-HhhhcCCChH
Confidence 12468999999999999999999999999999999999999999999999999999888 3555 5667788899
Q ss_pred HHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhc--
Q 017380 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVV-- 316 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~-- 316 (372)
.++.++++++..+++|++|+||+||.|.+..+|..|++..+ +..|+. +|.+-| ..|-|...|...|++++
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~------~~~pd~-i~~vgealvg~dsv~q~~~fn~al~~ 525 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIK------VNKPDL-ILFVGEALVGNDSVDQLKKFNRALAD 525 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHh------cCCCce-EEEehhhhhCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999877 357874 444456 99999999999998764
Q ss_pred -----CchhhHhhhcccc-ccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 317 -----GITGLILTKLDGS-ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 317 -----~~tgiiltkld~t-~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.|+||+|||+|.. .+-|+++..++-.+.||.|+|.||.+.||+..+.+++|+.|+.
T Consensus 526 ~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~ 587 (587)
T KOG0781|consen 526 HSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK 587 (587)
T ss_pred CCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence 3999999999854 3568899999999999999999999999999999999998873
No 24
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=5.4e-32 Score=255.96 Aligned_cols=257 Identities=18% Similarity=0.317 Sum_probs=202.7
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIV 176 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lv 176 (372)
++.++.+.++++.|+++||+++++.++.+............ ...+...+.+++...+..... + ..+|++++|+
T Consensus 9 ~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~~~-~~~vl~~v~~~l~~~~~~~~~-----~-~~~~~~i~~~ 81 (270)
T PRK06731 9 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMI-TEEVIEYILEDMSSHFNTENV-----F-EKEVQTIALI 81 (270)
T ss_pred hcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCCcc-ccHHHHHHhcccEEeeCCccc-----c-cCCCCEEEEE
Confidence 34577889999999999999999999998664333222111 222323334444444432111 1 2367999999
Q ss_pred cCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhh-hhchH
Q 017380 177 GVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK-EQGFD 255 (372)
Q Consensus 177 GpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d 255 (372)
||||+||||++.+|++.+...+.+|.+...|.+|+++.+|++.|+...++++.... ++.. +.+.+.... ..++|
T Consensus 82 G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~----~~~~-l~~~l~~l~~~~~~D 156 (270)
T PRK06731 82 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR----DEAA-MTRALTYFKEEARVD 156 (270)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC----CHHH-HHHHHHHHHhcCCCC
Confidence 99999999999999999887778999999999999999999999999998873322 2222 233443322 24689
Q ss_pred HHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 256 ~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
.+++||+|+.+.....+.+|....+. .+|++++||||+ +.+.|...+.+.|. .++++++|+||+|++.++|+
T Consensus 157 ~ViIDt~Gr~~~~~~~l~el~~~~~~------~~~~~~~LVl~a~~~~~d~~~~~~~f~-~~~~~~~I~TKlDet~~~G~ 229 (270)
T PRK06731 157 YILIDTAGKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFK-DIHIDGIVFTKFDETASSGE 229 (270)
T ss_pred EEEEECCCCCcCCHHHHHHHHHHHhh------hCCCeEEEEEcCccCHHHHHHHHHHhC-CCCCCEEEEEeecCCCCccH
Confidence 99999999999998899988765543 278899999999 56779999999997 59999999999999999999
Q ss_pred eEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 335 VVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 335 vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
++.+.+..++|+.|+++||.| +|+..++++.+++.+++
T Consensus 230 ~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~ 268 (270)
T PRK06731 230 LLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred HHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 999999999999999999999 89999999999999875
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=3.6e-32 Score=253.58 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=147.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+|.-.|++...++++||++++|++++|+||||||||||+++|+|+++|.+|+|.++|.+..+.... ..++.+++
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~k----elAk~ia~-- 80 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK----ELAKKLAY-- 80 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHH----HHhhhEEE--
Confidence 455678877889999999999999999999999999999999999999999999999888665433 33444443
Q ss_pred eEeccccccHHHHHHHHHHh--------------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKR--------------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
++|.........+++.+.. .+.+.++..+ +..|+.+..++.+.+|||||| .|||||+++|+
T Consensus 81 -vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL-~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 81 -VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL-ELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred -eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHH-HHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 3333211111111111111 0111233334 677999999999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceee------eccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKF------VGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~------i~~Ge~v~ 356 (372)
+|+||| |+.||...|.++++ ++.++.. ++|.|+|++.||++.+.+| +.+|+.+.
T Consensus 159 --iLLLDEPTs~LDi~~Q~evl~--------ll~~l~~-~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 159 --ILLLDEPTSHLDIAHQIEVLE--------LLRDLNR-EKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred --EEEeCCCccccCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 999999 99999999999998 9999975 5699999999999998554 56888883
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-32 Score=253.17 Aligned_cols=174 Identities=21% Similarity=0.319 Sum_probs=137.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc------cchhhhhHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT------FRAAASDQLEIWA 221 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~------~r~~a~eql~~~~ 221 (372)
+++...|++..+++|+||++++|++++|+||||+|||||++.|.|+++|..|+|.+.+... .|++++.|...+-
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 4666778754689999999999999999999999999999999999999999999977643 2344444422111
Q ss_pred HhhCcceeEeccccccHHHHHHHHHH--------------hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVK--------------RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.|. .+++.+. ..+.+.++..| +.+|+.++.++.+.+|||||+ .|||
T Consensus 88 --~~fP~------------tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL-~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 88 --RSFPI------------TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL-ERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred --CCCCc------------CHHHHHHccCcccccccccccHHHHHHHHHHH-HHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 11111 1111111 11123455556 799999999999999999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceee
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKF 348 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~ 348 (372)
||+++|+ +|+||| ++|+|+..+..++. +|.++.. +|.+|++|+||++....|
T Consensus 153 AL~~~p~--lllLDEP~~gvD~~~~~~i~~--------lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 153 ALAQNPD--LLLLDEPFTGVDVAGQKEIYD--------LLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HhccCCC--EEEecCCcccCCHHHHHHHHH--------HHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 9999999 999999 99999999988888 9999984 499999999999998554
No 27
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=6.1e-31 Score=240.70 Aligned_cols=206 Identities=18% Similarity=0.263 Sum_probs=158.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++++.|++..+++++||++++|++++++||+|||||||+++|.+++.|++|+|.+++.++.....++-. +.+|+
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR----r~IGY- 79 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR----RKIGY- 79 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH----Hhhhh-
Confidence 5789999998999999999999999999999999999999999999999999999999887654444322 23333
Q ss_pred eeEeccccccHHHHHHHHHH-------hh---hhhchHHHHHHhhCCCc--cchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 228 IVVAEGEKAKASSVLSQAVK-------RG---KEQGFDIVLCDTSGRLH--TNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~d~vl~dt~G~~~--~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+.+..+.+|...+.+++. +. ...+.++ +++.+|+.+ +.++++.||||||+ .+||||+.+|+
T Consensus 80 --viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~- 155 (309)
T COG1125 80 --VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP- 155 (309)
T ss_pred --hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC-
Confidence 334444444444433322 11 1223444 458999975 78999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC-----CCCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE-----DLQP 360 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~-----Dl~~ 360 (372)
+|++|| +..+||..+.++-+ -+.++.. .-+.|||+||||++.+ +..+..|+.+. ++-.
T Consensus 156 -ilLMDEPFgALDpI~R~~lQ~--------e~~~lq~-~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 156 -ILLMDEPFGALDPITRKQLQE--------EIKELQK-ELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred -eEeecCCccccChhhHHHHHH--------HHHHHHH-HhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999 99999999977776 5566653 5589999999999887 55778888772 2334
Q ss_pred CCHHHHHHHhcC
Q 017380 361 FDAEAFVNAIFS 372 (372)
Q Consensus 361 ~~~~~~v~~l~~ 372 (372)
-.+.+||+.++|
T Consensus 226 ~Pan~FV~~f~g 237 (309)
T COG1125 226 NPANDFVEDFFG 237 (309)
T ss_pred CccHHHHHHHhc
Confidence 446688887764
No 28
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.6e-31 Score=245.90 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=157.4
Q ss_pred HHHHHhcc-----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTK-----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~-----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.|.|.. ..+++|+||++++|++++|||.+|+|||||++++.++.+|++|+|.++|.|...... ..++...++
T Consensus 6 ~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~-~~Lr~~R~~ 84 (339)
T COG1135 6 NVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE-AELRQLRQK 84 (339)
T ss_pred eeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh-HHHHHHHhh
Confidence 44555654 357899999999999999999999999999999999999999999999877655433 335666677
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+|+ +++..+......+++++... ..+++.. +++.+|+.+..++++.+|||||| +|||||+.+|
T Consensus 85 IGM---IFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~e-lLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 85 IGM---IFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAE-LLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred ccE---EeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHH-HHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 776 66777666655666554322 1122333 45899999999999999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+ +|+.|| |+.|||.....++. .++++.. .-|-||++|||+|++. +.++..|+.|+
T Consensus 161 ~--iLL~DEaTSALDP~TT~sIL~--------LL~~In~-~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 161 K--ILLCDEATSALDPETTQSILE--------LLKDINR-ELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred C--EEEecCccccCChHHHHHHHH--------HHHHHHH-HcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 9 999999 99999999989988 8999985 5699999999999986 77899999884
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.5e-30 Score=238.34 Aligned_cols=191 Identities=18% Similarity=0.230 Sum_probs=150.5
Q ss_pred HHHHHhccC----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKK----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+|.+.|+.. .+++++||++++||+++|+||+||||||||++|+|+.+|++|.|.+.+.|.......+......+.+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~i 85 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKI 85 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhE
Confidence 455555432 4689999999999999999999999999999999999999999999888876655443333334444
Q ss_pred CcceeEeccccccHHHHHHHHHHhh---------hhhchHHHHHHhhCCCccch-hhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG---------KEQGFDIVLCDTSGRLHTNY-SLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~vl~dt~G~~~~~~-~~~~eLS~G~r---~iAral~~~P~ 291 (372)
|+ ++|.....|...+.+++.-. ........+.+.+|+.+... +++.+|||||+ +||||++.+|+
T Consensus 86 Gf---vFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~ 162 (226)
T COG1136 86 GF---VFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK 162 (226)
T ss_pred EE---ECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC
Confidence 54 67777766666666555411 11222334556789986665 88999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGE 353 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge 353 (372)
+++.|| |.+||..+..+++. ++.++.+ ..|.|+|+||||..++ +.++.+|+
T Consensus 163 --iilADEPTgnLD~~t~~~V~~--------ll~~~~~-~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 163 --IILADEPTGNLDSKTAKEVLE--------LLRELNK-ERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred --eEEeeCccccCChHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 999999 99999999989998 8898864 5588999999999886 66788887
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3.9e-30 Score=233.99 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=152.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.||...++++++|++++|++++|+||+|+||||+++.|.|+++|++|+|.+.|.|....... ++....+++|+
T Consensus 12 r~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~-~~~~ir~r~Gv- 89 (263)
T COG1127 12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE-ELYEIRKRMGV- 89 (263)
T ss_pred eeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHH-HHHHHHhheeE-
Confidence 5788899998899999999999999999999999999999999999999999999999886554433 33345556666
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
++|....+....+++++... ..++....-++.+|+... .+.++.||||||+ ++|||++.+|+
T Consensus 90 --lFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe-- 165 (263)
T COG1127 90 --LFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE-- 165 (263)
T ss_pred --EeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC--
Confidence 45555444444555554321 111222223467899887 7899999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++++|| |+||||+....+-+ +|.++.. +-|.|+++||||+.-. +.++.+|..+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~--------LI~~L~~-~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDE--------LIRELND-ALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred EEEecCCCCCCCcchHHHHHH--------HHHHHHH-hhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 999999 99999999855554 8888875 5689999999999764 6677888765
No 31
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.5e-30 Score=228.43 Aligned_cols=187 Identities=20% Similarity=0.227 Sum_probs=147.2
Q ss_pred HHHHHHhccCC-CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTKKG-NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~~~-~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
..++|.|++.. +++|++|+++.|+|++|+||||+||||++++|++++.|++|+|.+++.|+.+.+ ..+.+.+|+
T Consensus 5 ~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-----~~vrr~IGV 79 (245)
T COG4555 5 TDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-----SFVRRKIGV 79 (245)
T ss_pred eehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-----HHHhhhcce
Confidence 35788898754 789999999999999999999999999999999999999999999999986643 233344554
Q ss_pred ceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
.....+......+.+.+.+. .+...+ .+.+.+++..+.+++..++|.|+| .||||++++|.
T Consensus 80 ---l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~-~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~-- 153 (245)
T COG4555 80 ---LFGERGLYARLTARENLKYFARLNGLSRKEIKARIA-ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPS-- 153 (245)
T ss_pred ---ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC--
Confidence 22333333223333333221 122233 345788999999999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++|+|| |+|+|......+.+ ++..+. +.|.++|++||.+... +..+..|+.|
T Consensus 154 i~vlDEP~sGLDi~~~r~~~d--------fi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHD--------FIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHH--------HHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 999999 99999998866555 888887 6799999999998764 6678899988
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=8.4e-30 Score=224.14 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=162.1
Q ss_pred HHHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 147 KNSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 147 ~~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
.+++.+.|+.. .+++|+||++++|+++-++||+||||||++++|.+..+|+.|+|.+.+.|..+... .++..+.+++|
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~-~~iP~LRR~IG 82 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG-REIPFLRRQIG 82 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc-cccchhhheee
Confidence 36888999764 48999999999999999999999999999999999999999999999999877654 34555667777
Q ss_pred cceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ ++|+....+...+++++..+ ..+++..+ +|.+|+.+..+..+.+||||++ +||||++++|.
T Consensus 83 v---VFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~-L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~- 157 (223)
T COG2884 83 V---VFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV-LDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA- 157 (223)
T ss_pred e---EeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHH-HHHhccchhhhcCccccCchHHHHHHHHHHHccCCC-
Confidence 6 66777666666667665432 12233444 4899999999999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC------ceeeeccCcccCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI------PVKFVGVGEGVED 357 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~------pi~~i~~Ge~v~D 357 (372)
+|+.|| |.++|+....++++ ++.++. ..|.||++.|||..+ ++..+..|..+.|
T Consensus 158 -vLlADEPTGNLDp~~s~~im~--------lfeein--r~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 158 -VLLADEPTGNLDPDLSWEIMR--------LFEEIN--RLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred -eEeecCCCCCCChHHHHHHHH--------HHHHHh--hcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 999999 99999999889998 999998 679999999999876 4667888887744
No 33
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.6e-30 Score=233.23 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=148.5
Q ss_pred HHHHHhccCC----CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKKG----NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~~----~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+|...|+... +++++||++.+|++++|+|++||||||+.+.|+|+.+|+.|+|.+.|....+... .+.+...
T Consensus 8 nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~---~~~~~~~- 83 (252)
T COG1124 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR---AKAFYRP- 83 (252)
T ss_pred ceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc---chhhccc-
Confidence 5556666655 7899999999999999999999999999999999999999999998755433211 1122222
Q ss_pred CcceeEecccc--ccHHHHHHHHHHhhh--------hhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 225 GCEIVVAEGEK--AKASSVLSQAVKRGK--------EQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 225 ~v~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.. +++++. ..|...+.+.+...- .++... +.+.+|+.+ +.++++.||||||+ +|||||..+|
T Consensus 84 -VQm-VFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~-~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 84 -VQM-VFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE-LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred -eeE-EecCCccccCcchhHHHHHhhhhccCCccHHHHHHHH-HHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 333 445442 344444444443221 112333 447889964 57899999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDL 358 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl 358 (372)
+ +||+|| |+.||+..|+++++ ++.++.+ ..+-+.|+||||+.+. +.++.+|+.||+.
T Consensus 161 k--lLIlDEptSaLD~siQa~Iln--------lL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 161 K--LLILDEPTSALDVSVQAQILN--------LLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred C--EEEecCchhhhcHHHHHHHHH--------HHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 9 999999 99999999999999 9999986 6788999999999986 7788899999764
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.6e-30 Score=234.08 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=144.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+...+++|+||++.+||+++||||+|||||||+++|||+.+|++|+|.+.|...... ..++.
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----------~~~~~ 75 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----------GPDIG 75 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----------CCCEE
Confidence 3566778877889999999999999999999999999999999999999999999977654221 11223
Q ss_pred eeEeccccccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ ++|.+...|...+.+++... . ...+.. +++.+|+.+..++++.||||||| +||||++.+|+ +
T Consensus 76 ~-vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~-~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~--l 151 (248)
T COG1116 76 Y-VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE-LLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK--L 151 (248)
T ss_pred E-EeccCcccchhhHHhhheehhhccccchHhHHHHHHH-HHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCC--E
Confidence 3 66777777777776654321 1 112333 44799999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVG 352 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~G 352 (372)
|+||| ++.||+..+..+.+ .+.++-+ +.+.||++||||.+.+ |..++++
T Consensus 152 LLlDEPFgALDalTR~~lq~--------~l~~lw~-~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 152 LLLDEPFGALDALTREELQD--------ELLRLWE-ETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEcCCcchhhHHHHHHHHH--------HHHHHHH-hhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999 99999999977776 4555543 5579999999999887 4466775
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=8.2e-30 Score=232.73 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=149.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++|.+.||...+++++||++++|++++||||||+||||++++|+|.|+|++|+|.+.+.|..+..+.+.. +.|+.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia-----r~Gi~ 82 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA-----RLGIA 82 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH-----hccce
Confidence 5789999999999999999999999999999999999999999999999999999998887655443311 23332
Q ss_pred eeEeccccccHHHHHHHHHH---------------------hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHH
Q 017380 228 IVVAEGEKAKASSVLSQAVK---------------------RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iA 283 (372)
- .+|....++...+.+++. ..........+++.+|+.+..+.+.++||.|++ .||
T Consensus 83 R-TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 83 R-TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred e-ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 2 222222222111111110 011112233355899999999999999999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|||+.+|+ +|+||| .+|+++....++.. +|.++.. ..|.+|++|.|||++. +..+..|+.+-
T Consensus 162 rALa~~P~--lLLLDEPaAGln~~e~~~l~~--------~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 162 RALATQPK--LLLLDEPAAGLNPEETEELAE--------LIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHhcCCC--EEEecCccCCCCHHHHHHHHH--------HHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999 999999 99999999988888 8999973 3578999999999997 56678999883
Q ss_pred C
Q 017380 357 D 357 (372)
Q Consensus 357 D 357 (372)
+
T Consensus 231 e 231 (250)
T COG0411 231 E 231 (250)
T ss_pred c
Confidence 3
No 36
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=2.4e-28 Score=246.59 Aligned_cols=276 Identities=22% Similarity=0.297 Sum_probs=209.7
Q ss_pred hHHHHHHhhHHHHHHhHHH-HHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 017380 68 SDVEKIFSGFSKTRDNLAV-IDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDAL 146 (372)
Q Consensus 68 ~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 146 (372)
..|..++.+|..+|+.|.. +..+. |.....++.-..+.+.|++.||+..++.+|++.+.+.. +....+..+
T Consensus 260 ~~l~~m~~El~~lR~lle~q~~~l~--~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~------~~~~~~~~l 331 (559)
T PRK12727 260 EELKQLRGELALMRQMIEREMNRLT--DERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADT------ELHRGRGLM 331 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhccc------chhhHHHHH
Confidence 4577788888888887752 33332 43333467888899999999999999999999886642 122334556
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc--CCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~--~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+.|.+.+.- .+..+ +++|++++|+||+|+|||||+.+|++.+... +++|.+.+.|+||.++.+|++.|+..+
T Consensus 332 ~~~L~~~l~v----~~~~~-l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL 406 (559)
T PRK12727 332 LGLLSKRLPV----APVDP-LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL 406 (559)
T ss_pred HHHHHHhcCc----Ccccc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc
Confidence 6666665532 22222 4679999999999999999999999987653 468999999999999999999999998
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGL 303 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsgl 303 (372)
++++...... ..+...+.. ..++|.+++||+|+.+.+...+.+|..... . .+...+||++. +...
T Consensus 407 gv~v~~a~d~-----~~L~~aL~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-----a--~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 407 GIAVHEADSA-----ESLLDLLER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-----A--RQVTSLLVLPANAHFS 472 (559)
T ss_pred CceeEecCcH-----HHHHHHHHH--hccCCEEEecCCCcchhhHHHHHHHHHHHH-----h--hcCCcEEEEECCCChh
Confidence 8877332211 122333332 346889999999999888777777753321 1 12345999999 5556
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIF 371 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~ 371 (372)
|.....+.|. ..+++|+|+||+|++.++|.+|.+.+..++|+.|+++||+| +||+++++..|++++.
T Consensus 473 Dl~eii~~f~-~~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 473 DLDEVVRRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred HHHHHHHHHH-hhCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 7776667776 47899999999999999999999999999999999999999 8999999999998764
No 37
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.9e-29 Score=241.10 Aligned_cols=188 Identities=20% Similarity=0.223 Sum_probs=149.1
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++.+.|+ ...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|..+. ...+.+++++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-----~~~~~~~igy 82 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-----PAKVRRRIGY 82 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----HHHHHhheEE
Confidence 57888999 58899999999999999999999999999999999999999999999998887542 1122233343
Q ss_pred ceeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.+...+...+.+.+.... .+.++.+ ++.+|+.+..++++.+||+||| .||.||+.+|+
T Consensus 83 ---~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~-l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~-- 156 (293)
T COG1131 83 ---VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL-LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE-- 156 (293)
T ss_pred ---EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHH-HHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC--
Confidence 445444444444444443210 1223444 4788998866888999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccc-eeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARG-GCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~g-g~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+.++++ +|.++. .+| .+|+++||.++.. +.++..|+.+.
T Consensus 157 lliLDEPt~GLDp~~~~~~~~--------~l~~l~--~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWE--------LLRELA--KEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHH--------HHHHHH--hCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 999999 99999999988887 999997 445 6999999998775 66788888773
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.4e-29 Score=224.74 Aligned_cols=209 Identities=16% Similarity=0.250 Sum_probs=164.6
Q ss_pred HHHHHHh-ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLL-TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~-~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++|.+.| ++..+++++||++++||+++||||+|||||||+++|+|+..|+.|+|.+.+.+...... .+++.|...+|+
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~-k~lr~~r~~iGm 85 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKG-KELRKLRRDIGM 85 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccch-HHHHHHHHhcee
Confidence 4778889 77788999999999999999999999999999999999999999999998877654433 457777777776
Q ss_pred ceeEeccccccHHHHHHHHHHhh---------------hhhc--hHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG---------------KEQG--FDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
+++..+.-+...+++++... ..++ ...-.++.+|+.+....+.++|||||+ +|||||
T Consensus 86 ---IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 86 ---IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ---EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 66666655555444433211 1111 122234788999999999999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceee------eccCcccCCCC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKF------VGVGEGVEDLQ 359 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~------i~~Ge~v~Dl~ 359 (372)
+++|+ +++.|| +++|||.+..++++ +|.++.. ..|.|+|...|+++++..| +..|+.|-|..
T Consensus 163 ~Q~pk--iILADEPvasLDp~~a~~Vm~--------~l~~in~-~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 163 VQQPK--IILADEPVASLDPESAKKVMD--------ILKDINQ-EDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hcCCC--EEecCCcccccChhhHHHHHH--------HHHHHHH-HcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 99999 999999 99999999999998 9999975 6799999999999998665 56899885553
Q ss_pred CCC-HHHHHHHhc
Q 017380 360 PFD-AEAFVNAIF 371 (372)
Q Consensus 360 ~~~-~~~~v~~l~ 371 (372)
+-. .+++++.++
T Consensus 232 ~~el~~~~~~~iY 244 (258)
T COG3638 232 ASELTDEALDEIY 244 (258)
T ss_pred hhhhhHHHHHHHh
Confidence 322 234444444
No 39
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=6.3e-29 Score=241.25 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=152.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+...+++|+||++++||+++|+|||||||||+|++|||+..|++|+|.+.|.|...... +.+.++
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp------~kR~ig-- 80 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP------EKRPIG-- 80 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------hhcccc--
Confidence 468899998889999999999999999999999999999999999999999999999988765332 223344
Q ss_pred eeEeccccccHHHHHHHHHHhhhh-----------hchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKE-----------QGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+ ++|.+..+|...+++++.+... +.+...+ +.+++.++.++++.||||||+ ++||||+.+|+
T Consensus 81 ~-VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L-~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~-- 156 (352)
T COG3842 81 M-VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL-ELVGLEGFADRKPHQLSGGQQQRVALARALVPEPK-- 156 (352)
T ss_pred e-eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHH-HHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc--
Confidence 4 7788888888777777544311 2334444 788999999999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| .++||..-+.++-. -+.++.. ..|.|.|+||||-..+ |..+..|+..
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~--------Elk~lq~-~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRK--------ELKELQR-ELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred hhhhcCcccchhHHHHHHHHH--------HHHHHHH-hcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 999999 99999888866665 4455543 4599999999998776 5567777654
No 40
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.3e-28 Score=221.45 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=143.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++++|.|+...+++|+||++++|++++++||||+|||||+++|.|++.|+.|+|.|.+.+..+ ...+++|+
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~--------~~~~rIGy- 76 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ--------EIKNRIGY- 76 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh--------hhhhhccc-
Confidence 578999999999999999999999999999999999999999999999999999998876522 11233333
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
.+...+..+...+.+.+.+. .....+.++ +.+++..+..+++.+||+|++ .+-.+++++|+ +
T Consensus 77 --LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wL-er~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe--L 151 (300)
T COG4152 77 --LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL-ERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE--L 151 (300)
T ss_pred --ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHH-HhccccccccchHHHhhhhhhHHHHHHHHHhcCCC--E
Confidence 33333333333333222211 122345555 688999999999999999998 77778899999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|||| ++||||.++. ++.+ .+..+. ++|.|||+++|.|.-+ +..+..||.|
T Consensus 152 lILDEPFSGLDPVN~e-lLk~-------~I~~lk--~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 152 LILDEPFSGLDPVNVE-LLKD-------AIFELK--EEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred EEecCCccCCChhhHH-HHHH-------HHHHHH--hcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 99999 9999999994 4444 677776 6899999999999876 6677888887
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=5e-28 Score=222.51 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=130.0
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|++ ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+....+....
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHI 84 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcE
Confidence 45556654 45789999999999999999999999999999999999999999999776543221111111111222
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ + +.+.....+...+.+.+... ....++.+ ++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 85 ~--~-~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 85 G--F-VFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEEL-LERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred E--E-EeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 2 2 33333222221222222110 01123333 4678998878889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| |+|+|+..+..+.. ++.++.. ..+.+||++||++..+
T Consensus 161 --lllLDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~ 204 (218)
T cd03255 161 --IILADEPTGNLDSETGKEVME--------LLRELNK-EAGTTIVVVTHDPELA 204 (218)
T ss_pred --EEEEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCeEEEEECCHHHH
Confidence 999999 99999999988877 8888752 2488999999998764
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=2.9e-28 Score=235.72 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=143.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..+... .+...+++
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~-----~~~~~ig~- 84 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR-----HARQRVGV- 84 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH-----HHHhcEEE-
Confidence 467778887778999999999999999999999999999999999999999999998877643211 12233333
Q ss_pred eeEeccccccHHHHHHHHHHhh------h----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG------K----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------~----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.....+...+.+.+... . ....+. +++.+|+.+..++.+.+||+||+ .||+|++.+|+ +
T Consensus 85 --v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~--l 159 (306)
T PRK13537 85 --VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPP-LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD--V 159 (306)
T ss_pred --EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC--E
Confidence 44444333322233332210 0 112223 34688988888899999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| |+|||+..+..++. ++.++. ++|.+||++||++... +..+..|+.+
T Consensus 160 llLDEPt~gLD~~~~~~l~~--------~l~~l~--~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWE--------RLRSLL--ARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988887 888885 4589999999999864 5567788776
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=5.7e-28 Score=221.92 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=130.0
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|++ ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .....+.+..+
T Consensus 6 ~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~i~- 83 (216)
T TIGR00960 6 QVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG-REIPFLRRHIG- 83 (216)
T ss_pred EEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh-hHHHHHHHhce-
Confidence 34455643 246889999999999999999999999999999999999999999997765432111 11122223332
Q ss_pred ceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 84 -~-~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~-- 158 (216)
T TIGR00960 84 -M-VFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSA-ALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP-- 158 (216)
T ss_pred -E-EecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC--
Confidence 2 34443332222222222210 1112333 34678988888899999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| |+|+|+..+..+.+ ++.++. .++.+||++||+.+..
T Consensus 159 llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~vsH~~~~~ 201 (216)
T TIGR00960 159 LLLADEPTGNLDPELSRDIMR--------LFEEFN--RRGTTVLVATHDINLV 201 (216)
T ss_pred EEEEeCCCCcCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHH
Confidence 999999 99999999988877 788875 3488999999998754
No 44
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.5e-28 Score=235.96 Aligned_cols=187 Identities=17% Similarity=0.176 Sum_probs=151.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.||+..+++++|+++++|++++|+|||||||||||++|||+..|++|+|.+.+.|...... +.-++.
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P--------~~R~ia 78 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP--------EKRGIA 78 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--------hHCCEE
Confidence 477888987547899999999999999999999999999999999999999999998887644221 233555
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ ++|.+..+|...+++++.... .+++..+. +.+++.+..++++.+|||||| ++|||++.+|+ +
T Consensus 79 m-VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva-~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~--v 154 (338)
T COG3839 79 M-VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA-KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK--V 154 (338)
T ss_pred E-EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH-HHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC--E
Confidence 5 788888888878887765431 12233333 678999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+++|| .++||+.-+...-. .|.++.+ .-+.|+|.+|||.-.+ +..+..|...
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~--------ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~ 213 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRS--------EIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213 (338)
T ss_pred EEecCchhHhhHHHHHHHHH--------HHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeee
Confidence 99999 99999999877666 6777764 5588999999997554 5566667554
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.4e-28 Score=225.54 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=138.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... .+...+....+ +
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-~~~~~~~~~i~--~ 81 (235)
T cd03261 5 GLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE-AELYRLRRRMG--M 81 (235)
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccCh-hhHHHHhcceE--E
Confidence 34455665567899999999999999999999999999999999999999999997766433211 11122222222 2
Q ss_pred eEeccccccHHHHHHHHHHhh-------h----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-------K----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------~----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.....+...+.+.+... . ...+.. +++.+|+.+..++.+.+||+||+ .||||++.+|+ +
T Consensus 82 -v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--l 157 (235)
T cd03261 82 -LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLE-KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE--L 157 (235)
T ss_pred -EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 34433332222222222110 0 111223 34678988878899999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+++.. +.++.+|+.+.
T Consensus 158 lllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDD--------LIRSLKK-ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred EEecCCcccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence 99999 99999999988887 8887752 2478999999999753 55677888763
No 46
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.7e-28 Score=217.45 Aligned_cols=190 Identities=17% Similarity=0.235 Sum_probs=151.0
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.++|.|.|++..+++++||++++||+++++||||+||||++.++.|+.+|++|+|.+++.|.....-. ...++|+
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~-----~RArlGi 81 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-----KRARLGI 81 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChH-----HHhhcCc
Confidence 46899999999999999999999999999999999999999999999999999999999887554322 1235677
Q ss_pred ceeEeccccccHHHHHHHHHHhh--------h--h--hchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG--------K--E--QGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~--------~--~--~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.+ .+|.+..+....+.+++... . . ...+. |++.+++.|..+++...||||+| .|||||+.+|+
T Consensus 82 gY-LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~-LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GY-LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDA-LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred cc-ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHH-HHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 66 56655433333333322110 0 1 11333 44778999999999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+++||| ++|.||....++-. |+..+. .+|..|++.-|+...- ...+..|+..
T Consensus 160 --fiLLDEPFAGVDPiaV~dIq~--------iI~~L~--~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 160 --FILLDEPFAGVDPIAVIDIQR--------IIKHLK--DRGIGVLITDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred --EEEecCCccCCCchhHHHHHH--------HHHHHH--hCCceEEEccccHHHHHhhhheEEEEecCeEE
Confidence 999999 99999999988877 999998 6799999999988765 3456677765
No 47
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.2e-28 Score=225.45 Aligned_cols=186 Identities=18% Similarity=0.191 Sum_probs=151.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec---cccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG---DTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~---d~~r~~a~eql~~~~~~~ 224 (372)
+++.+.|+...+++|++++++.|+.++++|||||||||++++|||+..|+.|+|.+.+. |..+ +....++.
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~------~~~~~R~V 79 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN------LAVRDRKV 79 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc------cchhhcce
Confidence 57788899888889999999999999999999999999999999999999999999887 5422 22333444
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh------------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK------------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
|+ +++.+..++...+++++.... ..++.. +++.+.+.+..++++.+|||||| ++|||++.+
T Consensus 80 Gf---vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~e-lL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 80 GF---VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-LLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred eE---EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHH-HHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 44 667777777777777665431 122333 35788999999999999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
|+ +|+||| +..||..-+.++-. .++++-. ..|.+.++||||.... +..+.+|..
T Consensus 156 P~--vLLLDEPf~ALDa~vr~~lr~--------wLr~~~~-~~~~ttvfVTHD~eea~~ladrvvvl~~G~I 216 (345)
T COG1118 156 PK--VLLLDEPFGALDAKVRKELRR--------WLRKLHD-RLGVTTVFVTHDQEEALELADRVVVLNQGRI 216 (345)
T ss_pred CC--eEeecCCchhhhHHHHHHHHH--------HHHHHHH-hhCceEEEEeCCHHHHHhhcceEEEecCCee
Confidence 99 999999 99999988866655 7788753 5589999999998876 667888863
No 48
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=1.4e-27 Score=230.65 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=136.4
Q ss_pred HhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 153 LLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 153 ~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ..+...+++ +.+
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~~---~~q 73 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-----RKVRRSIGI---VPQ 73 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH-----HHHHhhcEE---ecC
Confidence 355556789999999999999999999999999999999999999999999877653311 112222332 333
Q ss_pred cccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 233 GEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ .||+|++.+|+ +|+|||
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--lllLDE 150 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE-LLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD--VLFLDE 150 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 33333222222222210 0112333 44788998888899999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+|||+..+..++. ++.++. .+|.+||++||+++.. +.++..|+.+
T Consensus 151 Pt~gLD~~~~~~l~~--------~l~~~~--~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 151 PTTGLDPRTRRAIWD--------YIRALK--EEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred CCcCCCHHHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999988887 888886 4588999999999764 5567778765
No 49
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=5e-28 Score=237.07 Aligned_cols=192 Identities=15% Similarity=0.206 Sum_probs=144.8
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .+++.+...
T Consensus 6 ~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~-~~l~~~r~~- 83 (343)
T TIGR02314 6 NITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN-SELTKARRQ- 83 (343)
T ss_pred EEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHHHhcC-
Confidence 45556642 246899999999999999999999999999999999999999999998877644322 122222233
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+ +++.....+...+++.+.... .+.+.. +++.+|+.+..++++.+||+||+ +|||||+.+|+
T Consensus 84 -Ig~-v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e-~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 84 -IGM-IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTE-LLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred -EEE-EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 333 455544443333343332110 112233 44788999888999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|++|| |++||+..+..++. ++.++.. ..|.+||++||+++.. +.++.+|+.++
T Consensus 161 --iLLlDEPts~LD~~t~~~i~~--------lL~~l~~-~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 161 --VLLCDEATSALDPATTQSILE--------LLKEINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988888 8888863 3489999999999875 56778888774
No 50
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.1e-27 Score=236.17 Aligned_cols=188 Identities=18% Similarity=0.240 Sum_probs=143.1
Q ss_pred HhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 153 LLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 153 ~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+ ++... +.++.+ +.+
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~-~~~~r-r~~i~~-v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE-LREVR-RKKIGM-VFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHH-HHHHH-hCcEEE-EEC
Confidence 466666789999999999999999999999999999999999999999999887765432221 21111 223333 555
Q ss_pred cccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 233 GEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
.....+...+.+.+... ..+.+.. +++.+|+.+..++++.+||+||+ .|||||+.+|+ +|+|||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~-~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~--iLLlDE 155 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALE-LLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD--ILLMDE 155 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 55555433333333211 0122333 44788998888999999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++++|+..+..++. .+.++.. ..+.|+|++||+++.. +.++.+|+.+
T Consensus 156 P~saLD~~~r~~l~~--------~l~~l~~-~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 156 AFSALDPLIRDSMQD--------ELKKLQA-TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred CcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999988887 7777753 4488999999999864 5577888876
No 51
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=5.4e-28 Score=236.87 Aligned_cols=188 Identities=18% Similarity=0.163 Sum_probs=143.2
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.++|.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..... ..+...+++
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-----~~~~~~ig~ 118 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-----RLARARIGV 118 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-----HHHhccEEE
Confidence 367888888777899999999999999999999999999999999999999999999887753211 112222332
Q ss_pred ceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.....+...+.+.+... .....+. +++.+|+.+..++.+.+||+||+ .||+|++.+|+
T Consensus 119 ---v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~-- 192 (340)
T PRK13536 119 ---VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS-LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ-- 192 (340)
T ss_pred ---EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC--
Confidence 33433322222222222110 0111223 34678998888999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|||+..+..+++ +|.++. ..|.+||++||+++.. +..+.+|+.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~--------~l~~l~--~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWE--------RLRSLL--ARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988887 888886 4589999999999875 5577788776
No 52
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.1e-28 Score=223.28 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=137.4
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|+. ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... +...+. ..
T Consensus 10 ~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~~-~~ 87 (233)
T PRK11629 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA-AKAELR-NQ 87 (233)
T ss_pred eEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH-HHHHHH-hc
Confidence 45555643 2468999999999999999999999999999999999999999999987765433221 111111 11
Q ss_pred CcceeEeccccccHHHHHHHHHHh----------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKR----------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.+.+ +.+.....+...+.+.+.. ...+.+.. +++.+|+.+..++.+.+||+||+ .||++++.+|+
T Consensus 88 ~i~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 88 KLGF-IYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE-MLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred cEEE-EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2222 3443332221122222211 00112233 34688998878889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+||| |+|+|+..+..+.+ ++.++.. .+|.+||++||+++.+ +.++.+|+.+.+
T Consensus 166 --lllLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 166 --LVLADEPTGNLDARNADSIFQ--------LLGELNR-LQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred --EEEEeCCCCCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 999999 99999999988877 7887752 3588999999998865 345667766543
No 53
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.6e-27 Score=217.39 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=133.3
Q ss_pred HHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|++ ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+... ..+.+. +.
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-------~~~~~~--i~ 74 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-------KERRKS--IG 74 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------HHhhcc--eE
Confidence 45566765 567899999999999999999999999999999999999999999997765421 111122 22
Q ss_pred eeEecccc-ccHHHHHHHHHHhh------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 228 IVVAEGEK-AKASSVLSQAVKRG------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
+ +.+.+. ......+.+.+... ....+..+ ++.+|+.+..++++.+||+||+ .|||+++.+|+ +|+|
T Consensus 75 ~-~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--llll 150 (205)
T cd03226 75 Y-VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETV-LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD--LLIF 150 (205)
T ss_pred E-EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHH-HHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC--EEEE
Confidence 2 333321 11111223333211 01123333 4688998888899999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
|| |+|+|+..+..+.. ++.++. .+|.++|++||++... +..+.+|+.
T Consensus 151 DEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 151 DEPTSGLDYKNMERVGE--------LIRELA--AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred eCCCccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99 99999999987777 888875 3588999999998754 334555543
No 54
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.9e-27 Score=226.08 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=142.7
Q ss_pred HHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 146 LKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
..+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... .+..+. ...
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~-~~~~~~-~~~ 103 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK-ELRELR-RKK 103 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh-hhhhhh-cCc
Confidence 456889999988889999999999999999999999999999999999999999999977664322111 111110 112
Q ss_pred cceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+.+ +.+.....+...+.+.+... ....++.+ ++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 104 i~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~- 180 (269)
T cd03294 104 ISM-VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA-LELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD- 180 (269)
T ss_pred EEE-EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC-
Confidence 222 33433322222222222110 01123333 4678988878899999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..++. ++.++.. ..|.++|++||++... +.++..|+.+.
T Consensus 181 -illLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 181 -ILLMDEAFSALDPLIRREMQD--------ELLRLQA-ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred -EEEEcCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999 99999999988887 8887752 3478999999998753 45677887663
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.7e-28 Score=220.58 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=134.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. .+.. .+.+
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------~~~~--~i~~ 76 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP------PERR--NIGM 76 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc------hhhc--cEEE
Confidence 4555666556789999999999999999999999999999999999999999999776643211 1111 1222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|
T Consensus 77 -v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~--~l 152 (213)
T cd03259 77 -VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE-LLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS--LL 152 (213)
T ss_pred -EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHH-HHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33332222211222222110 0112233 34678888878899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..++. ++.++.. ..|.+||++||++... +..+.+|+.+
T Consensus 153 llDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 153 LLDEPLSALDAKLREELRE--------ELKELQR-ELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999 99999999988887 8887752 3478999999998753 4455666654
No 56
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.7e-27 Score=219.42 Aligned_cols=182 Identities=15% Similarity=0.161 Sum_probs=129.7
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|++ ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .....+. ..
T Consensus 6 ~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~-~~ 83 (221)
T TIGR02211 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS-NERAKLR-NK 83 (221)
T ss_pred eeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCH-hHHHHHH-Hh
Confidence 44555643 246889999999999999999999999999999999999999999997766433211 1111111 11
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.+.+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+
T Consensus 84 ~i~~-v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 84 KLGF-IYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYE-MLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred cEEE-EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 2222 33333222211222222110 0112233 44678988888899999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| |+|+|+..+..+.. ++.++.. ..+.++|++||+++.+
T Consensus 162 --illlDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 162 --LVLADEPTGNLDNNNAKIIFD--------LMLELNR-ELNTSFLVVTHDLELA 205 (221)
T ss_pred --EEEEeCCCCcCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHH
Confidence 999999 99999999988877 8887752 3478999999999865
No 57
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=1.4e-27 Score=217.54 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=130.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+.........+.+..+ +
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~--~ 80 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG--Y 80 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee--E
Confidence 45556665567899999999999999999999999999999999999999999998776432211110111122222 2
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|
T Consensus 81 -~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~--ll 156 (206)
T TIGR03608 81 -LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE-ALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP--LI 156 (206)
T ss_pred -EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 33333322222222222110 0112233 34678888778889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+||| |+|+|+..+..++. ++.++. .++.++|++||+...+
T Consensus 157 llDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLD--------LLLELN--DEGKTIIIVTHDPEVA 197 (206)
T ss_pred EEeCCcCCCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHH
Confidence 9999 99999999988877 888876 3488999999998754
No 58
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.7e-27 Score=217.03 Aligned_cols=185 Identities=20% Similarity=0.207 Sum_probs=140.0
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH----HHHhhCcceeEec
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI----WAERTGCEIVVAE 232 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~----~~~~~~v~~~~~~ 232 (372)
..+++|+||++++|++++++||||+|||||+++|+|++.|++|+|.+.|.+.|+... +.++. .+++.+..+..+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~-~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE-EYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHH-HHHHHHHHHhhhhheeeeech-
Confidence 356889999999999999999999999999999999999999999999999987311 11121 233333322111
Q ss_pred cccccHHHHHHHHHH---hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 233 GEKAKASSVLSQAVK---RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~---~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
..+...+.....+ ..-.++.+ .+.+..++....+.++..||-||| .+|.+|.++|+ +|+||| |-|||.
T Consensus 115 --~~ds~~v~~~Iy~Ipd~~F~~r~~-~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~--VLfLDEpTvgLDV 189 (325)
T COG4586 115 --ALDSLEVLKLIYEIPDDEFAERLD-FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK--VLFLDEPTVGLDV 189 (325)
T ss_pred --hhhhHHHHHHHHhCCHHHHHHHHH-HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc--EEEecCCccCcch
Confidence 1121121111111 11112223 344677888888999999999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
..|..+.+ .++...+ ..+.||+..||+++-. |..|..||.|.|
T Consensus 190 ~aq~~ir~--------Flke~n~-~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 190 NAQANIRE--------FLKEYNE-ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred hHHHHHHH--------HHHHHHH-hhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 99988887 8898876 6789999999999764 778899999965
No 59
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=2.6e-27 Score=217.13 Aligned_cols=180 Identities=22% Similarity=0.300 Sum_probs=129.7
Q ss_pred HHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+ ....++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+..+.... ....+.+..+
T Consensus 6 ~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~i~-- 82 (214)
T TIGR02673 6 NVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-QLPLLRRRIG-- 82 (214)
T ss_pred eeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH-HHHHHHhheE--
Confidence 4555663 44578999999999999999999999999999999999999999999977665432111 1112222222
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+ +
T Consensus 83 ~-~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~--l 158 (214)
T TIGR02673 83 V-VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA-ALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP--L 158 (214)
T ss_pred E-EecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC--E
Confidence 2 33333322211222222110 0112233 44677888777889999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+||| |+|+|+..+..+.. ++.++. .++.++|++||++...
T Consensus 159 llLDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILD--------LLKRLN--KRGTTVIVATHDLSLV 200 (214)
T ss_pred EEEeCCcccCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHH
Confidence 99999 99999999988887 777775 3588999999998754
No 60
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4e-27 Score=221.35 Aligned_cols=192 Identities=18% Similarity=0.225 Sum_probs=152.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
.+.+..+....+.++||+++.|||+.|.|-+|||||||+++|.+++.|+.|+|++.+.|..+....+-......++.+
T Consensus 33 ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sM-- 110 (386)
T COG4175 33 EILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM-- 110 (386)
T ss_pred HHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhh--
Confidence 444455555567899999999999999999999999999999999999999999999998887665433333344444
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
++|.....|...+.++..+. +.+....+| +++|+..+.++++.||||||+ .+||||+.+|+ +|
T Consensus 111 -VFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l-~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~--Il 186 (386)
T COG4175 111 -VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEAL-ELVGLEGYADKYPNELSGGMQQRVGLARALANDPD--IL 186 (386)
T ss_pred -hhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHH-HHcCchhhhhcCcccccchHHHHHHHHHHHccCCC--EE
Confidence 66777777776666654432 122334444 799999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++|| ++.|||.-+.+.-. -+.++.. .-.+||++||||++.+ |..+.+|+.|
T Consensus 187 LMDEaFSALDPLIR~~mQd--------eLl~Lq~-~l~KTIvFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQD--------ELLELQA-KLKKTIVFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred EecCchhhcChHHHHHHHH--------HHHHHHH-HhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence 9999 99999998877766 3444542 3478999999999886 6678888887
No 61
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=3.6e-27 Score=233.56 Aligned_cols=194 Identities=15% Similarity=0.171 Sum_probs=147.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec----cccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG----DTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~----d~~r~~a~eql~~~~~~ 223 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. +...... .+++.+. +
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~-~~l~~~r-~ 105 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDA-ATLRRLR-T 105 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCH-HHHHHHh-c
Confidence 57788899888899999999999999999999999999999999999999999999764 3322111 1222221 1
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
..+.+ +++.....+...+.+.+... . ...... +++.+|+.+..++++.+||+||+ .|||||+.+|
T Consensus 106 ~~i~~-vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e-~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 106 HRVSM-VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDE-QLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CCEEE-EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23433 55555555433334333221 0 112233 44788999888999999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+ +|+||| |++||+..+..+++ .+.++.. ..+.|+|++|||++.. +.++.+|+.++
T Consensus 184 ~--ILLlDEPts~LD~~~r~~l~~--------~L~~l~~-~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 184 D--ILLMDEPFSALDPLIRTQLQD--------ELLELQA-KLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred C--EEEEECCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 999999 99999999988887 7777753 3489999999999874 56788898874
No 62
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=3e-27 Score=220.84 Aligned_cols=192 Identities=16% Similarity=0.246 Sum_probs=137.5
Q ss_pred HHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+ +...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .....+....+
T Consensus 6 ~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~i~-- 82 (243)
T TIGR02315 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG-KKLRKLRRRIG-- 82 (243)
T ss_pred eeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCH-HHHHHHHhheE--
Confidence 4556676 5567899999999999999999999999999999999999999999997766432211 11112222222
Q ss_pred eeEeccccccHHHHHHHHHHh------------------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 228 IVVAEGEKAKASSVLSQAVKR------------------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
+ +.+.....+...+.+.+.. .....+.. +++.+|+.+..++.+.+||+||+ +|||++
T Consensus 83 ~-v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 83 M-IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS-ALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred E-EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHH-HHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 2 3333322221122222210 01112233 34677887777889999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+|+|+..+..+.. +|.++.. ..|.++|++||+++.. +.++.+|+.+.
T Consensus 161 ~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 161 AQQPD--LILADEPIASLDPKTSKQVMD--------YLKRINK-EDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred hcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999 999999 99999999988777 8887752 3478999999999864 45677887763
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=1.2e-27 Score=238.72 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=143.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... +.+..++++
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~----~~~~~~ig~- 81 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA----RAASRRVAS- 81 (402)
T ss_pred eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH----HHHhcceEE-
Confidence 356667777678899999999999999999999999999999999999999999998877644222 112233332
Q ss_pred eeEeccccccHHHHHHHHHHh--------------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKR--------------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+.....+...+.+.+.. ...+.++. +++.+|+.+..++.+.+||+||| .|||||+++|
T Consensus 82 --v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~-~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 82 --VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVER-AMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred --EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3333322211112222211 01112333 44788998888999999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+ +|+||| |+|||+..+.+++. +|.++. .++.+||+++|+++.. +..+.+|+.+.+
T Consensus 159 ~--iLLLDEPtsgLD~~~~~~l~~--------lL~~l~--~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 159 P--VLLLDEPTASLDINHQVRTLE--------LVRRLV--DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred C--EEEEECCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9 999999 99999999988887 889886 3578999999999886 567788887743
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-27 Score=220.73 Aligned_cols=192 Identities=15% Similarity=0.220 Sum_probs=137.0
Q ss_pred HHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+. ...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+....+ ...+... +.
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~--i~ 81 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA-LRQLRRQ--IG 81 (241)
T ss_pred eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhH-HHHHHhc--cE
Confidence 44556654 45789999999999999999999999999999999999999999999876653322100 1111222 22
Q ss_pred eeEeccccccHHHHHHHHHHh------------------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 228 IVVAEGEKAKASSVLSQAVKR------------------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
+ +.+.....+...+.+.+.. .....+.. +++.+|+.+..++.+.+||+||+ +|||++
T Consensus 82 ~-~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 82 M-IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA-ALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred E-EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHH-HHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 2 3333322221112222210 00111222 34678887777889999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+++.. +.++.+|+.+.
T Consensus 160 ~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 160 MQQPK--LILADEPVASLDPASSRQVMD--------LLKRINR-EEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred hcCCC--EEEEeCccccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999 999999 99999999988877 7887752 3478999999998764 45677888764
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=4.2e-27 Score=218.91 Aligned_cols=189 Identities=18% Similarity=0.213 Sum_probs=137.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... .+. +.++.+
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~----~~~-~~~i~~ 79 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH----EIA-RLGIGR 79 (236)
T ss_pred eeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHH----HHH-hcCEEE
Confidence 455566655578999999999999999999999999999999999999999999977654332111 111 112222
Q ss_pred eEeccccccHHHHHHHHHHhh--------------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHH
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+
T Consensus 80 -v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 80 -TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE-LLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred -EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHH-HHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 33333222211122221100 0112233 34678988888899999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+++ ++.++. .+|.++|++||+++.. +.++.+|+.+.
T Consensus 158 l~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 158 LATDPK--LLLLDEPAAGLNPEETEELAE--------LIRELR--ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred HhcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999 999999 99999999988887 888875 3578999999999774 55677887764
No 66
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.1e-27 Score=233.96 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=143.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.+.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+....+.. .+.
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~--~ig 109 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRK--KIA 109 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhC--CEE
Confidence 457788887767899999999999999999999999999999999999999999998877543221111111112 232
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +.+.....+...+.+.+... ....++. +++.+|+.+..++++.+||+||+ .|||||+.+|+ +
T Consensus 110 y-v~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e-~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~--i 185 (400)
T PRK10070 110 M-VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALD-ALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD--I 185 (400)
T ss_pred E-EECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC--E
Confidence 3 44444433322223322211 0112333 34788998888999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| |++||+..+..+.. +|.++.. ..+.+||++||+++.. +.++.+|+.+
T Consensus 186 LLLDEPts~LD~~~r~~l~~--------~L~~l~~-~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQD--------ELVKLQA-KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred EEEECCCccCCHHHHHHHHH--------HHHHHHH-HCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988887 7777752 3478999999998764 5567888766
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-27 Score=232.73 Aligned_cols=192 Identities=16% Similarity=0.233 Sum_probs=141.0
Q ss_pred HHHHHhc----cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLT----KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~----~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|+ ...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... .+...+...+
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~~~~i 84 (343)
T PRK11153 6 NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSE-KELRKARRQI 84 (343)
T ss_pred eEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCH-HHHHHHhcCE
Confidence 4555665 2356899999999999999999999999999999999999999999998877643322 1122222223
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ + +.+.....+...+.+.+... ....... +++.+|+.+..++++.+||+||+ .|||||+.+|+
T Consensus 85 g--~-v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 85 G--M-IFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTE-LLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred E--E-EeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3 3 44443333222223322211 0112233 44788998888899999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+..++. +|.++.. ..|.++|++||++... +.++.+|+.++
T Consensus 161 --iLlLDEPts~LD~~~~~~l~~--------~L~~l~~-~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 161 --VLLCDEATSALDPATTRSILE--------LLKDINR-ELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 8888752 3488999999998764 56778888763
No 68
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.6e-27 Score=217.76 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=139.5
Q ss_pred HHHHHHhccC----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLTKK----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~~----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+++.+.|++. ..++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.+.......+ ...+...
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~~~~ 83 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE-LRKARRR 83 (233)
T ss_pred ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH-HHHHHhh
Confidence 3556667654 5789999999999999999999999999999999999999999999877653321111 1111222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +||++++.+|
T Consensus 84 --i~~-~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 84 --IGM-IFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLE-LLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred --eEE-EccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 222 33433333222222222110 0112233 34678888778889999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+.+.. +.++.+|+.+++
T Consensus 160 ~--lllLDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 160 K--VLLCDEATSALDPETTQSILA--------LLRDINR-ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred C--EEEecCCCCcCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9 999999 99999999988877 7887752 3478999999999864 456778887643
No 69
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=3.2e-27 Score=215.75 Aligned_cols=185 Identities=18% Similarity=0.212 Sum_probs=135.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ..+....+ +
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~~~~~~i~--~ 76 (208)
T cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------IEALRRIG--A 76 (208)
T ss_pred EEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch------HHHHhhEE--E
Confidence 344556555678999999999999999999999999999999999999999999977664321 11112222 2
Q ss_pred eEeccccccHHHHHHHHHHhh------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
+.+.....+...+.+.+... .....+. +++.+|+.+..++.+.+||+||+ ++|++++.+|+ +|+|||
T Consensus 77 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--llllDE 152 (208)
T cd03268 77 -LIEAPGFYPNLTARENLRLLARLLGIRKKRIDE-VLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD--LLILDE 152 (208)
T ss_pred -ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHH-HHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC--EEEECC
Confidence 34433333222223322111 1112333 34678888888899999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+|+|+..+..++. ++.++. .++.++|++||+.+.. +.++..|+.+
T Consensus 153 Pt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 153 PTNGLDPDGIKELRE--------LILSLR--DQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999988877 777775 3578999999998764 4456677654
No 70
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.4e-27 Score=218.47 Aligned_cols=188 Identities=20% Similarity=0.254 Sum_probs=135.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... ..+....+ +
T Consensus 5 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~~~~i~--~ 77 (220)
T cd03265 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-----REVRRRIG--I 77 (220)
T ss_pred EEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-----HHHhhcEE--E
Confidence 3445566556789999999999999999999999999999999999999999999776543211 11112222 2
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....++. +++.+|+.+..++++.+||+||+ .||+|++.+|+ +|
T Consensus 78 -~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~--ll 153 (220)
T cd03265 78 -VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE-LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE--VL 153 (220)
T ss_pred -ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33333222211222222110 0112233 34678988778899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |+|+|+..+..+.. ++.++.. ..|.++|++||+.... +.++.+|+.+.
T Consensus 154 llDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWE--------YIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred EEcCCccCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999 99999999987777 7887752 2378999999998764 55677887763
No 71
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=3.9e-27 Score=218.15 Aligned_cols=193 Identities=16% Similarity=0.164 Sum_probs=133.6
Q ss_pred HHHHHHhccC----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLTKK----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~~----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+++.+.|++. ..++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+....... +...+. .
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~-~ 87 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE-ARAKLR-A 87 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH-HHHHHH-h
Confidence 3555666541 368999999999999999999999999999999999999999999977654322111 111111 1
Q ss_pred hCcceeEeccccccHHHHHHHHHHh----------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKR----------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
..+.+ +.+.+...+...+.+.+.. .....+..+ ++.+|+.+..++.+.+||+||+ .|||+++.+|
T Consensus 88 ~~i~~-~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p 165 (228)
T PRK10584 88 KHVGF-VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKAL-LEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165 (228)
T ss_pred heEEE-EEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 12222 3333322221112222110 001123333 4677888777889999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+...+ +.++.+|+.+
T Consensus 166 ~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 166 D--VLFADEPTGNLDRQTGDKIAD--------LLFSLNR-EHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred C--EEEEeCCCCCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9 999999 99999999988777 8888752 3478999999998765 3344555543
No 72
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3.4e-27 Score=214.07 Aligned_cols=190 Identities=19% Similarity=0.255 Sum_probs=153.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++|.-.|+...++.++||++++|++++++|+||+|||||++.|+|+.++.+|+|.+.|.|..+....+. -+.|+.
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r-----~r~Gi~ 81 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER-----ARLGIA 81 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH-----HhCCeE
Confidence 356678999889999999999999999999999999999999999999999999999999876554332 246666
Q ss_pred eeEeccccccHHHHHHHHHHhhh---------hhchHHHHHHhhC-CCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK---------EQGFDIVLCDTSG-RLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~vl~dt~G-~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++....++...+.+++.... ..+.+.+. +.+- +.+..+++.+.||||++ +|||||+.+|+ +
T Consensus 82 ~-VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~-~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk--l 157 (237)
T COG0410 82 Y-VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY-ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK--L 157 (237)
T ss_pred e-CcccccchhhCcHHHHHhhhhhcccccccccccHHHHH-HHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC--E
Confidence 5 777777777777777765321 01144444 3333 44566888999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCce------eeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPV------KFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi------~~i~~Ge~v 355 (372)
|+||| |.|+-|.-..++|. ++.++.. ..|.||+.|.++.+.+. ..+.+|+.+
T Consensus 158 LLLDEPs~GLaP~iv~~I~~--------~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFE--------AIKELRK-EGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred EEecCCccCcCHHHHHHHHH--------HHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 99999 99999999999998 9999973 33569999999988873 456788887
No 73
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=5.1e-27 Score=215.05 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=128.8
Q ss_pred HHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 150 VLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 150 l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+.+.|+. ...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .+...+... +.+
T Consensus 6 l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~-~~~~~~~~~--i~~ 82 (214)
T cd03292 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRG-RAIPYLRRK--IGV 82 (214)
T ss_pred EEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCH-HHHHHHHHh--eEE
Confidence 3445643 357899999999999999999999999999999999999999999998766533211 111122222 222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.+...+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|
T Consensus 83 -v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--ll 158 (214)
T cd03292 83 -VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA-ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT--IL 158 (214)
T ss_pred -EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC--EE
Confidence 44443332221222222111 0112233 34677888777889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+||| |+|+|+..+..+.. ++.++. .+|.++|++||+.+..
T Consensus 159 llDEPt~~LD~~~~~~~~~--------~l~~~~--~~~~tiiivtH~~~~~ 199 (214)
T cd03292 159 IADEPTGNLDPDTTWEIMN--------LLKKIN--KAGTTVVVATHAKELV 199 (214)
T ss_pred EEeCCCCcCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHH
Confidence 9999 99999999988877 888875 3588999999998654
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=4.9e-27 Score=215.89 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=134.8
Q ss_pred HHHHHhccC----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKK----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|++. ..++++||++++|++++|+|+||||||||++.|+|+++|++|+|.+.+.+.... ...+....
T Consensus 6 ~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----~~~~~~~i 80 (218)
T cd03266 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-----PAEARRRL 80 (218)
T ss_pred EEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-----HHHHHhhE
Confidence 344556544 578999999999999999999999999999999999999999999977654321 11122222
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ + +.+.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 81 ~--~-~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 81 G--F-VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE-LADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred E--E-ecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 2 2 33333222211122222110 0112233 44788998888899999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+.. ++.++. .+|.++|++||+.... +..+.+|+.+
T Consensus 157 --illlDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 157 --VLLLDEPTTGLDVMATRALRE--------FIRQLR--ALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred --EEEEcCCCcCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 999999 99999999988777 888875 4588999999998753 4456677654
No 75
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=5.4e-27 Score=216.40 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=135.2
Q ss_pred HHHHHh-ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLL-TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~-~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.| +....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... .+...+....+
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~-~~~~~~~~~i~-- 82 (222)
T PRK10908 6 HVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN-REVPFLRRQIG-- 82 (222)
T ss_pred eeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCCh-hHHHHHHhheE--
Confidence 445556 44456899999999999999999999999999999999999999999997766533211 11122223232
Q ss_pred eeEeccccccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +.+.+...+...+.+.+... . ...++. +++.+|+.+..++.+.+||+||+ +||||++.+|+ +
T Consensus 83 ~-~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--l 158 (222)
T PRK10908 83 M-IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA-ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA--V 158 (222)
T ss_pred E-EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHH-HHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC--E
Confidence 2 33433222212222222110 0 111223 44678888777889999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| |+|+|+..+..++. ++.++. .++.++|++||+++.. +.++.+|+.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILR--------LFEEFN--RVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999 99999999987777 777775 3478999999998754 4456667654
No 76
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=3.4e-27 Score=228.04 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=138.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ...+....+
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~i~-- 80 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-----ARLARVAIG-- 80 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-----HHHHhhcEE--
Confidence 3556677766678999999999999999999999999999999999999999999987664221 111122222
Q ss_pred eeEeccccccHHHHHHHHHHh-h-----h----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKR-G-----K----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~-----~----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +.+.....+...+.+.+.. . . ....+. +++.+|+.+..++.+.+||+||+ .||+|++.+|+ +
T Consensus 81 ~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--l 156 (303)
T TIGR01288 81 V-VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS-LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ--L 156 (303)
T ss_pred E-EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 2 3333332222222222211 0 0 011223 34788988888899999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| |+|+|+..+..++. ++.++. .+|.+||++||++... +.++.+|+.+
T Consensus 157 llLDEPt~gLD~~~~~~l~~--------~l~~~~--~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWE--------RLRSLL--ARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988887 888875 4588999999998764 5567788765
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-27 Score=233.15 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=144.1
Q ss_pred HHHHHh-ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLL-TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~-~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.| +....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .+.++.
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--------~~r~ig 79 (356)
T PRK11650 8 AVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP--------ADRDIA 79 (356)
T ss_pred eEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--------HHCCEE
Confidence 455667 55567889999999999999999999999999999999999999999998877643221 112343
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++.+..++...+++.+.... ...++. +++.+|+.+..++++.+||+||+ +|||||+.+|+ +
T Consensus 80 ~-v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~--l 155 (356)
T PRK11650 80 M-VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE-AARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA--V 155 (356)
T ss_pred E-EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHH-HHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 3 556655555444444443211 112333 44788999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| +++||+..+..+.. .+.++.. ..|.++|++|||.... +.++..|+.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRL--------EIQRLHR-RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred EEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999 99999999988887 7777753 3488999999998754 6677888876
No 78
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.2e-27 Score=216.27 Aligned_cols=190 Identities=24% Similarity=0.264 Sum_probs=142.9
Q ss_pred HHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 151 LDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 151 ~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
...|++. .+++++||++++|+.++|+|+|||||||+++.|+|+++|++|.|.+.+.++... .......+..|+
T Consensus 10 ~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~---~~~~~~~~~vG~--- 83 (235)
T COG1122 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE---KSLLELRQKVGL--- 83 (235)
T ss_pred EEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccch---hhHHHhhcceEE---
Confidence 3455544 678899999999999999999999999999999999999999999977765321 112233344444
Q ss_pred Eeccccc-cHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 230 VAEGEKA-KASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 230 ~~~~~~~-~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.+.. .....+.+-+... ..+.++.++ ..+|+.+..++.+.+|||||+ +||.+|+.+|+ +|
T Consensus 84 VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l-~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~--il 160 (235)
T COG1122 84 VFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL-ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE--IL 160 (235)
T ss_pred EEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHH-HHcCchhhccCCccccCCcceeeHHhhHHHHcCCC--EE
Confidence 4444321 1111222212111 122344455 577999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDL 358 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl 358 (372)
|||| |+|||+..+.+++. ++.++.. ..|.|+|++|||++.. +..+..|+.+.|-
T Consensus 161 iLDEPta~LD~~~~~~l~~--------~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLE--------LLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred EEcCCCCCCCHHHHHHHHH--------HHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 9999 99999999988888 9999974 3468999999999886 5567888886433
No 79
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=3.6e-27 Score=215.76 Aligned_cols=177 Identities=23% Similarity=0.293 Sum_probs=127.4
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|++ ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+...++
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~i~- 78 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL----KELRRKVG- 78 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH----HHHHhhce-
Confidence 44556655 457899999999999999999999999999999999999999999997765432111 11222222
Q ss_pred ceeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 227 EIVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ +.+.+. ..+...+.+.+... ....+.. +++.+|+.+..++++.+||+||+ .||||++.+|+
T Consensus 79 -~-~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~- 154 (211)
T cd03225 79 -L-VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEE-ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD- 154 (211)
T ss_pred -E-EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC-
Confidence 2 333321 11111122222110 0111222 34677887777888999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| |+|+|+..+..++. ++.++. .+|.++|++||++...
T Consensus 155 -llllDEPt~~LD~~~~~~~~~--------~l~~~~--~~~~tvi~~sH~~~~~ 197 (211)
T cd03225 155 -ILLLDEPTAGLDPAGRRELLE--------LLKKLK--AEGKTIIIVTHDLDLL 197 (211)
T ss_pred -EEEEcCCcccCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHH
Confidence 999999 99999999988887 788776 3478999999998754
No 80
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.94 E-value=1.9e-26 Score=207.82 Aligned_cols=171 Identities=23% Similarity=0.263 Sum_probs=123.8
Q ss_pred ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 155 TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 155 ~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... .....+....+ + +.+.+
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~~~~~~~~~i~--~-~~q~~ 77 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR--KGLLERRQRVG--L-VFQDP 77 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc--cchHHHHhhEE--E-EecCh
Confidence 3445688999999999999999999999999999999999999999999776642110 11112222222 2 33332
Q ss_pred c--ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 235 K--AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 235 ~--~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
. ..+ ..+.+.+... ..+.++. +++.+|+.+..++.+.+||+||+ .||||++.+|+ +|+|||
T Consensus 78 ~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--llllDE 153 (190)
T TIGR01166 78 DDQLFA-ADVDQDVAFGPLNLGLSEAEVERRVRE-ALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD--VLLLDE 153 (190)
T ss_pred hhcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC--EEEEcC
Confidence 1 111 1122222110 0112233 33677888878899999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
|+|+|+..+..+.. ++.++. .+|.+||++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~--------~l~~~~--~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLA--------ILRRLR--AEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeecccc
Confidence 99999999988877 788775 458899999999864
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=6.1e-27 Score=214.40 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=129.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... .....+.. .+.+
T Consensus 5 ~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~~~--~i~~ 80 (213)
T cd03262 5 NLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK--KNINELRQ--KVGM 80 (213)
T ss_pred EEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc--hhHHHHHh--cceE
Confidence 3445565555788999999999999999999999999999999999999999999776553210 01112222 2222
Q ss_pred eEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.....+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ .+||+++.+|+ +
T Consensus 81 -~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--l 156 (213)
T cd03262 81 -VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE-LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK--V 156 (213)
T ss_pred -EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHH-HHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC--E
Confidence 33433322211122222110 0112233 34677888778899999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+||| |+|+|+..+..++. ++.++. ..|.++|++||+....
T Consensus 157 lllDEP~~~LD~~~~~~l~~--------~l~~~~--~~~~tvi~~sh~~~~~ 198 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLD--------VMKDLA--EEGMTMVVVTHEMGFA 198 (213)
T ss_pred EEEeCCccCCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHH
Confidence 99999 99999999988777 888886 3478999999998764
No 82
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-26 Score=231.57 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=167.1
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.+++.|.|+...+++++||++.+|||++|+|.||+|||||+++|+|.|+|++|+|.++|........ .-+...|+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp-----~~A~~~GI 85 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP-----RDALAAGI 85 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH-----HHHHhCCc
Confidence 4689999999999999999999999999999999999999999999999999999997665422211 12455677
Q ss_pred ceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
.. +.|+....|...+.+++--. ........+++..|.....+.++.+||.++| +||||+..++
T Consensus 86 ~~-V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 86 AT-VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred EE-EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 66 66666555544444443111 1112222344677775447899999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc--CC-CCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV--ED-LQP 360 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v--~D-l~~ 360 (372)
+ +||||| |+.|+..+...+|. ++.++. ++|.++|+|||.++.. +..+.+|+.| .+ +..
T Consensus 165 r--llIlDEPTaaLt~~E~~~Lf~--------~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 165 R--VLILDEPTAALTVKETERLFD--------LIRRLK--AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred C--EEEEcCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9 999999 99999999999998 999998 7899999999999875 6788999999 34 578
Q ss_pred CCHHHHHHHhcC
Q 017380 361 FDAEAFVNAIFS 372 (372)
Q Consensus 361 ~~~~~~v~~l~~ 372 (372)
++.+++++.+.|
T Consensus 233 ~~~~~lv~~MvG 244 (500)
T COG1129 233 TSEDELVRLMVG 244 (500)
T ss_pred CCHHHHHHHhhC
Confidence 999999998764
No 83
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=5.3e-27 Score=214.91 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=133.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|+....++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+....... .. .+.+
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~------~~--~i~~ 76 (213)
T cd03301 5 NVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK------DR--DIAM 76 (213)
T ss_pred eeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc------cc--eEEE
Confidence 445556655678999999999999999999999999999999999999999999977664321110 01 1222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ..+.++. +++.+|+.+..++.+.+||+||+ +|||+++.+|+ +|
T Consensus 77 -~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~--ll 152 (213)
T cd03301 77 -VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE-VAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK--VF 152 (213)
T ss_pred -EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33332222111122222110 0112233 34677888778899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..++. ++.++.. ..+.++|++||++... +.++.+|+.+
T Consensus 153 llDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 153 LMDEPLSNLDAKLRVQMRA--------ELKRLQQ-RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999 99999999988887 7887752 3478999999998753 4455666654
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.2e-27 Score=214.66 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=131.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+... .+.. .+.+
T Consensus 5 ~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--------~~~~--~i~~ 74 (210)
T cd03269 5 NVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--------AARN--RIGY 74 (210)
T ss_pred EEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------HHHc--cEEE
Confidence 34445655456889999999999999999999999999999999999999999997765421 1111 2222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ .||++++.+|+ +|
T Consensus 75 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~--~l 150 (210)
T cd03269 75 -LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDE-WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE--LL 150 (210)
T ss_pred -eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHH-HHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33332222211122221110 0112233 34677888777889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..+.+ ++.++. .++.++|++||+.... +..+.+|+.+
T Consensus 151 llDEP~~~LD~~~~~~~~~--------~l~~~~--~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKD--------VIRELA--RAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred EEeCCCcCCCHHHHHHHHH--------HHHHHH--HCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 9999 99999999988777 787775 3578999999998764 4455666654
No 85
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4.9e-26 Score=198.83 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=156.9
Q ss_pred HHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc---------cchhhhhH
Q 017380 146 LKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT---------FRAAASDQ 216 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~---------~r~~a~eq 216 (372)
..++|-|.||...+++++|++.++|++|.|||.+||||||+++||.-+.+|+.|.|.+.+... ...+...|
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 346889999999999999999999999999999999999999999999999999999966432 12345677
Q ss_pred HHHHHHhhCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHH
Q 017380 217 LEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 217 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iA 283 (372)
++....++++ +++..+.-....+.+++-.+ ........+++.+|+.+..+.++..|||||+ +||
T Consensus 88 ~~r~Rs~L~m---VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 88 LQRLRTRLGM---VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHhhH---hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 8777777776 44444433333333332211 1112223355789999999999999999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|||+.+|. +++.|| |+.|||.-.-+++. ++.++. +.|.|++++||+|+++ +.|+..|..-
T Consensus 165 RaLameP~--vmLFDEPTSALDPElVgEVLk--------v~~~LA--eEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 165 RALAMEPE--VMLFDEPTSALDPELVGEVLK--------VMQDLA--EEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred HHHhcCCc--eEeecCCcccCCHHHHHHHHH--------HHHHHH--HhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 99999999 999999 99999999988888 999998 5799999999999997 7788888654
No 86
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=9.4e-27 Score=215.99 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=135.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+..... +. +..+.+
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~----~~-~~~i~~ 79 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK----RA-RLGIGY 79 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhH----HH-hccEEE
Confidence 4455666556789999999999999999999999999999999999999999999776543221111 11 112222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ +||++++.+|+ +|
T Consensus 80 -~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~--ll 155 (232)
T cd03218 80 -LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE-LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK--FL 155 (232)
T ss_pred -ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33333222221222222110 0112233 34677888878899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..++. ++.++. .++.++|++||+++.. +.++.+|+.+
T Consensus 156 llDEPt~~LD~~~~~~~~~--------~l~~~~--~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQK--------IIKILK--DRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred EecCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999 99999999988877 888875 3578999999998643 5677888876
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.5e-27 Score=231.24 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=144.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.+...... .+.++.
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--------~~r~ig 81 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--------QQRDIC 81 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--------HHCCEE
Confidence 356667776667899999999999999999999999999999999999999999998776533211 112333
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++.+...+...+++.+.... .+.++. +.+.+|+.+..++++.+||+||+ +|||||+.+|+ +
T Consensus 82 ~-vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~-~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~--l 157 (351)
T PRK11432 82 M-VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKE-ALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK--V 157 (351)
T ss_pred E-EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC--E
Confidence 3 555555555444444443210 122333 44788999888999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| +++||+..+.++.. .+.++.. ..|.++|++|||.... +..+.+|+.+.
T Consensus 158 LLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 158 LLFDEPLSNLDANLRRSMRE--------KIRELQQ-QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred EEEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999 99999999988777 7777753 4488999999999864 66778888763
No 88
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.5e-27 Score=216.09 Aligned_cols=184 Identities=17% Similarity=0.184 Sum_probs=132.4
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|+. ...++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+.... ..
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------~~-- 73 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP---------GP-- 73 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc---------cC--
Confidence 34455654 4568899999999999999999999999999999999999999999977654210 01
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.+.+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .||||++.+|+
T Consensus 74 ~i~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 74 DRGY-VFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE-LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cEEE-EecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1111 22222211111112211110 0112233 34678888778889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec--cCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG--VGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~--~Ge~v~ 356 (372)
+|+||| |+|+|+..+..++. ++.++.. ..+.+||++||++... +.++. +|+.++
T Consensus 152 --lllLDEPt~~LD~~~~~~~~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 152 --VLLLDEPFSALDALTREQLQE--------ELLDIWR-ETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred --EEEECCCCCCCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999 99999999988887 7877742 3478999999999743 45566 577663
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=8.7e-27 Score=217.52 Aligned_cols=190 Identities=18% Similarity=0.234 Sum_probs=136.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+...... ....+.+..+ +
T Consensus 6 ~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~i~--~ 81 (240)
T PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV--DERLIRQEAG--M 81 (240)
T ss_pred eEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh--hHHHHhhceE--E
Confidence 44455655557899999999999999999999999999999999999999999998766532110 1111222222 2
Q ss_pred eEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +
T Consensus 82 -~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~--l 157 (240)
T PRK09493 82 -VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE-LLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK--L 157 (240)
T ss_pred -EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHH-HHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC--E
Confidence 33332222211122222110 0112233 34677888777889999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| |+|+|+..+..+.. ++.++. .++.++|++||++... +.++.+|+.+.
T Consensus 158 lllDEP~~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLK--------VMQDLA--EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred EEEcCCcccCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999 99999999987777 888875 4588999999999874 45677887763
No 90
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=5.1e-27 Score=231.64 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=144.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC--CeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG--AKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~--G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++.+.|+...+++++||++.+|++++|+||||||||||+++|+|+++|++ |+|.+.+.+...... . ...
T Consensus 9 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~------~--~r~ 80 (362)
T TIGR03258 9 DHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP------H--KRG 80 (362)
T ss_pred EEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH------H--HCC
Confidence 355667776667899999999999999999999999999999999999999 999998877533211 1 123
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+.+ +++.....+...+++.+.... ...++.+ ++.+|+.+..++++.+||+||+ +|||||+.+|+
T Consensus 81 ig~-vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~-l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~- 157 (362)
T TIGR03258 81 LAL-LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA-LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD- 157 (362)
T ss_pred EEE-EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC-
Confidence 333 555555555444454443211 1123333 4788999999999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccc-ceeeEeeeeccCCc------eeeeccCccc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSAR-GGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~-gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| +++||+..+.++.. .|.++.+ .. |.++|++|||++.. +.++.+|+.+
T Consensus 158 -llLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 158 -VLLLDEPLSALDANIRANMRE--------EIAALHE-ELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred -EEEEcCccccCCHHHHHHHHH--------HHHHHHH-hCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988877 7777763 32 78999999999864 5677888876
No 91
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=6.4e-27 Score=221.01 Aligned_cols=185 Identities=19% Similarity=0.159 Sum_probs=137.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. .+... +.
T Consensus 16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---------~~~~~--i~ 84 (257)
T PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA---------EARED--TR 84 (257)
T ss_pred EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH---------HhhCc--eE
Confidence 46666777666789999999999999999999999999999999999999999998554321 11112 22
Q ss_pred eeEeccccccHHHHHHHHHHhh----hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+ +.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|+|||
T Consensus 85 ~-v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~--lllLDEP 160 (257)
T PRK11247 85 L-MFQDARLLPWKKVIDNVGLGLKGQWRDAALQ-ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG--LLLLDEP 160 (257)
T ss_pred E-EecCccCCCCCcHHHHHHhcccchHHHHHHH-HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 2 33433332222233333211 1122333 34678998888899999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+|||+..+..+.. +|.++.. ..+.+||++||++... +.++.+|+.+.
T Consensus 161 t~~LD~~~~~~l~~--------~L~~~~~-~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 161 LGALDALTRIEMQD--------LIESLWQ-QHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCCCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999988777 7877742 3478999999998753 55677887763
No 92
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=5.7e-27 Score=230.71 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=144.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.+...... . +.++.
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~------~--~r~ig 79 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP------Q--KRDYG 79 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------H--HCCEE
Confidence 355667776566889999999999999999999999999999999999999999998776533211 1 12333
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++....+|...+++++.... ...++. +++.+|+.+..++++.+||+||+ +|||||+.+|+ +
T Consensus 80 ~-v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~-~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~--l 155 (353)
T TIGR03265 80 I-VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAE-LLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG--L 155 (353)
T ss_pred E-EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 3 556655555444444443211 122333 44788999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| ++++|+..+.++.. .+.++.. +.+.++|++||+.... +..+.+|+.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~--------~L~~l~~-~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRT--------EIRQLQR-RLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred EEEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988777 7777753 4588999999999864 6677888876
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.9e-27 Score=218.17 Aligned_cols=186 Identities=17% Similarity=0.115 Sum_probs=135.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... . +..+.+
T Consensus 7 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~------~--~~~i~~ 78 (239)
T cd03296 7 NVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV------Q--ERNVGF 78 (239)
T ss_pred eEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc------c--ccceEE
Confidence 45556665567899999999999999999999999999999999999999999997766432111 0 112222
Q ss_pred eEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.+...+...+.+.+... ....... +++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 79 -v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 79 -VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE-LLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred -EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHH-HHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 33333222211122221110 0011222 34677888778889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+.. ++.++.. ..|.+||++||+.+.. +.++.+|+.+
T Consensus 157 --llllDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 157 --VLLLDEPFGALDAKVRKELRR--------WLRRLHD-ELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred --EEEEcCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999 99999999988877 8888752 3478999999998753 5567788776
No 94
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=9.6e-27 Score=213.31 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=126.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. .+... +.+
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~~~--i~~ 72 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KERKR--IGY 72 (213)
T ss_pred cceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHHhh--eEE
Confidence 5666676556789999999999999999999999999999999999999999999776531 11111 222
Q ss_pred eEecccccc--HHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 229 VVAEGEKAK--ASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 229 ~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.+..... +...+.+.+... ..+.... +++.+|+.+..++.+.+||+||+ .||||++.+
T Consensus 73 -v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 73 -VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE-ALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred -eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHH-HHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 33322110 001122222110 0112223 34677887777888999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+ +|+||| |+|||+..+..+.+ ++.++. .++.++|++||+.+..
T Consensus 151 p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 151 PD--LLLLDEPFAGVDPKTQEDIYE--------LLRELR--REGMTILVVTHDLGLV 195 (213)
T ss_pred CC--EEEEeCCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHH
Confidence 99 999999 99999999988877 888875 3588999999998754
No 95
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-26 Score=212.12 Aligned_cols=189 Identities=19% Similarity=0.181 Sum_probs=134.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+|.+.|++..+ ++||++++ ++++|+||||+|||||++.|+|+++|++|+|.+.+.+............+.. .+.+
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~--~i~~ 79 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR--KIGL 79 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh--cEEE
Confidence 56778877543 99999999 9999999999999999999999999999999997766421110000111222 2222
Q ss_pred eEeccccccHHHHHHHHHHhh--------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .||++++.+|+ +|+|
T Consensus 80 -~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--llll 155 (214)
T cd03297 80 -VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDE-LLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE--LLLL 155 (214)
T ss_pred -EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHH-HHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC--EEEE
Confidence 34443322211222222110 1112233 44688888777889999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|| |+|+|+..+..+++ ++.++.. +.|.++|++||+.+.. +.++.+|+.+
T Consensus 156 DEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 156 DEPFSALDRALRLQLLP--------ELKQIKK-NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred cCCcccCCHHHHHHHHH--------HHHHHHH-HcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99 99999999988887 8888752 3478999999999753 5566777654
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=7.6e-27 Score=215.10 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=134.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... + .... .+.+
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~--~~~~--~i~~ 79 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH-E--RARA--GIGY 79 (222)
T ss_pred eEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH-H--HHhc--CeEE
Confidence 445566655678999999999999999999999999999999999999999999987654332111 1 1111 2222
Q ss_pred eEeccccccHHHHHHHHHHhh--------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
+.+.....+...+.+.+... .......+ .+.+ ++.+..+..+.+||+||+ +|||+++.+|+ +|+
T Consensus 80 -~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--lll 155 (222)
T cd03224 80 -VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV-YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK--LLL 155 (222)
T ss_pred -eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHH-HHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC--EEE
Confidence 33333322222222222111 01112223 3455 456667888999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
||| |+|+|+..+..++. ++.++. .++.++|++||++... +.++..|+.+.
T Consensus 156 lDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 156 LDEPSEGLAPKIVEEIFE--------AIRELR--DEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred ECCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 999 99999999988877 788775 3578999999999864 55677887764
No 97
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.7e-26 Score=216.66 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=137.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhh----hHHHHHHHh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAAS----DQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~----eql~~~~~~ 223 (372)
+++...|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... .....+...
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 7 KNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred eceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 3556667655678999999999999999999999999999999999999999999977654211000 001112222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.+ +.+.....+...+.+.+... ....+.. +++.+|+.+..+..+.+||+||+ +|||+++.+
T Consensus 87 --i~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 87 --VGF-VFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARE-LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred --EEE-EecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 222 33433322211222222110 0111222 34677888777889999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|+|+..+..+.. ++.++. .+|.++|++||+.... +.++.+|+.+.
T Consensus 163 p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 163 PE--VILFDEPTSALDPELVGEVLN--------TIRQLA--QEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred CC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99 999999 99999999988877 888775 3588999999998764 55677887663
No 98
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=1.7e-26 Score=212.61 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=134.7
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+. ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ..+....+
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~~i~- 78 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-----KAARQSLG- 78 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-----HHHhhhEE-
Confidence 44555654 45789999999999999999999999999999999999999999999776653211 11222222
Q ss_pred ceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+ +.+.....+...+.+.+... ....++.+ ++.+|+.+..+..+.+||+||+ +|||+++.+|+
T Consensus 79 -~-v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~-- 153 (220)
T cd03263 79 -Y-CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-LRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS-- 153 (220)
T ss_pred -E-ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC--
Confidence 2 33332222211222222110 01122333 4677888777889999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+.. ++.++. . +.++|++||++... +.++.+|+.+.
T Consensus 154 llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 212 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWD--------LILEVR--K-GRSIILTTHSMDEAEALCDRIAIMSDGKLRC 212 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHH--------HHHHHh--c-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999 99999999988877 788775 2 48999999998764 45667787664
No 99
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.4e-26 Score=214.73 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=135.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..+.. .+.+
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---~~~~~--~i~~ 79 (230)
T TIGR03410 5 NLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH---ERARA--GIAY 79 (230)
T ss_pred eEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH---HHHHh--CeEE
Confidence 345556655678999999999999999999999999999999999999999999977665332111 11111 2222
Q ss_pred eEeccccccHHHHHHHHHHhh-----h-hhchHHHHHHhhC-CCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----K-EQGFDIVLCDTSG-RLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----~-~~~~d~vl~dt~G-~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+.+.....+...+.+.+... . .......+.+..+ +.+..++.+.+||+||+ .|||+++.+|+ +|+||
T Consensus 80 -~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--illlD 156 (230)
T TIGR03410 80 -VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK--LLLLD 156 (230)
T ss_pred -eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC--EEEec
Confidence 33333333322222222211 0 0111122335555 45567888999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
| |+|+|+..+..+.. ++.++.. ..+.++|++||++... +..+..|+.+.
T Consensus 157 EPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGR--------VIRRLRA-EGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred CCcccCCHHHHHHHHH--------HHHHHHH-cCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 99999999988877 8887752 2478999999999754 55677888763
No 100
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=4.5e-27 Score=231.45 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=142.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+++.+...... . +..+.+
T Consensus 7 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~------~--~r~i~~ 78 (353)
T PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA------R--DRKVGF 78 (353)
T ss_pred EEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH------H--HCCEEE
Confidence 44556666567899999999999999999999999999999999999999999998876532211 1 123333
Q ss_pred eEeccccccHHHHHHHHHHhhh--------------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK--------------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+++.....+...+.+.+.... .+.+.. +++.+|+.+..++++.+||+||+ +|||||+.+|+
T Consensus 79 -v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 79 -VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ-LLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred -EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 555554444333343332210 112233 44788998888999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |++||+..+..+.. +|.++.. +.|.++|++|||+... +.++..|+.+.
T Consensus 157 --llLLDEP~s~LD~~~r~~l~~--------~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 157 --ILLLDEPFGALDAQVRKELRR--------WLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred --EEEEeCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 7888763 3488999999999864 66778888763
No 101
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-26 Score=216.04 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=137.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh--hhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA--ASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~--a~eql~~~~~~~~v 226 (372)
++...|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... .......+... +
T Consensus 7 ~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--i 84 (242)
T PRK11124 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRN--V 84 (242)
T ss_pred eeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhh--e
Confidence 4455566556789999999999999999999999999999999999999999999876642110 00011112222 2
Q ss_pred ceeEeccccccHHHHHHHHHHh-----------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 227 EIVVAEGEKAKASSVLSQAVKR-----------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
.+ +.+.....+...+.+.+.. .....+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+
T Consensus 85 ~~-~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~- 161 (242)
T PRK11124 85 GM-VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEK-LLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ- 161 (242)
T ss_pred EE-EecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC-
Confidence 22 3443332222122222210 00112233 34677888778889999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+.. ++.++. .+|.++|+++|+.... +.++.+|+.+.
T Consensus 162 -llilDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 162 -VLLFDEPTAALDPEITAQIVS--------IIRELA--ETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred -EEEEcCCCCcCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999 99999999988777 888875 4588999999998764 55677887663
No 102
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=1.9e-26 Score=213.32 Aligned_cols=188 Identities=17% Similarity=0.236 Sum_probs=134.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh-----hhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL-----KNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l-----~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|++ +|++|+|.+.+.+..+... +...+...
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~ 82 (227)
T cd03260 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV--DVLELRRR 82 (227)
T ss_pred EEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch--HHHHHHhh
Confidence 4455566556789999999999999999999999999999999999 8999999997765432210 11222222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhh--HhHHHHHHH---HHHHHHh
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSL--MEELVACKK---AVGKVVN 287 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~--~~eLS~G~r---~iAral~ 287 (372)
.+ + +.+..... ...+.+.+... ..+.... +++.+|+.+..++. +.+||+||+ +|||+++
T Consensus 83 i~--~-~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 83 VG--M-VFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEE-ALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred EE--E-EecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHH-HHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 22 2 33433222 12222222110 0112223 34677887665555 599999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+|+|+..+..++. +|.++. .+ .+||++||+++.. +..+.+|+.+.
T Consensus 158 ~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 158 NEPE--VLLLDEPTSALDPISTAKIEE--------LIAELK--KE-YTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred cCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--hC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9999 999999 99999999988887 888875 34 8999999998753 55677887764
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=9.5e-27 Score=227.34 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=137.1
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.+...... ..++.+.. .+.+ +.+.+ .
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~-~~~~~~r~--~i~~-v~Q~~~~~ 110 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD-DEWRAVRS--DIQM-IFQDPLAS 110 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCH-HHHHHHhC--ceEE-EecCchhh
Confidence 46789999999999999999999999999999999999999999998877644322 22222322 2333 45543 2
Q ss_pred ccHHHHHHHHHHh--------hh----hhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 236 AKASSVLSQAVKR--------GK----EQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 236 ~~~~~~~~~~~~~--------~~----~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
..+...+.+.+.. .. ...+. .+++.+|+. ...++++.+||+||+ +||||++.+|+ +||+||
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~--llilDE 187 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-AMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPK--LIICDE 187 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 2332222322211 00 11122 244788884 456889999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
|++||+..+.++++ +|.++.+ ..|.++|+||||++.. +.++..|+.+++
T Consensus 188 Pts~LD~~~~~~i~~--------lL~~l~~-~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 188 PVSALDVSIQAQVVN--------LLQQLQR-EMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred CCccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999988888 8888863 3588999999999876 667788887753
No 104
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=1.4e-26 Score=220.01 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=137.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... .....+... +.
T Consensus 11 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~~~~~--i~ 87 (269)
T PRK11831 11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR-SRLYTVRKR--MS 87 (269)
T ss_pred eCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh-hhHHHHhhc--EE
Confidence 456666765567899999999999999999999999999999999999999999997765432211 111112222 22
Q ss_pred eeEeccccccHHHHHHHHHHhh--------h---hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG--------K---EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+ +.+.....+...+.+.+... . ...+. .+++.+|+.+..++.+.+||+||+ .|||+++.+|+
T Consensus 88 ~-v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~-- 163 (269)
T PRK11831 88 M-LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVM-MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD-- 163 (269)
T ss_pred E-EecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC--
Confidence 2 33333222211122222110 0 01122 234678988878889999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|||+..+..++. ++.++.. ..|.+||++||++... +.++.+|+.+
T Consensus 164 lllLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVK--------LISELNS-ALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 999999 99999999988877 8888752 3478999999997653 4567788765
No 105
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.2e-27 Score=231.42 Aligned_cols=187 Identities=14% Similarity=0.186 Sum_probs=139.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... +.. .+.+
T Consensus 8 ~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~------~~~--~i~~ 79 (369)
T PRK11000 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP------AER--GVGM 79 (369)
T ss_pred EEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH------hHC--CEEE
Confidence 45566765567889999999999999999999999999999999999999999998776532211 111 2333
Q ss_pred eEeccccccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... . ...+.. +++.+|+.+..++++.+||+||+ +|||||+.+|+ +|
T Consensus 80 -v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~--lL 155 (369)
T PRK11000 80 -VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQ-VAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS--VF 155 (369)
T ss_pred -EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHH-HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 44444433332233333211 0 112333 34788998888999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |++||+..+..+.. +|.++.. ..|.++|++||+.+.. +.++.+|+.+.
T Consensus 156 LLDEPts~LD~~~~~~l~~--------~L~~l~~-~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRI--------EISRLHK-RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred EEeCCcccCCHHHHHHHHH--------HHHHHHH-HhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 99999999988777 7777752 3478999999998754 56778887763
No 106
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-26 Score=226.20 Aligned_cols=193 Identities=18% Similarity=0.175 Sum_probs=138.6
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh----cCCeEEEeeccccchhhhhHHHH-
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN----EGAKILMAAGDTFRAAASDQLEI- 219 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~----~~G~V~l~~~d~~r~~a~eql~~- 219 (372)
+|.+.|+. ..+++|+||++.+|++++|+|+||||||||++.|+|++++ ++|+|.+.+.|...... ++++.
T Consensus 8 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~-~~~~~~ 86 (326)
T PRK11022 8 KLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE-KERRNL 86 (326)
T ss_pred CeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH-HHHHHH
Confidence 44555544 2468999999999999999999999999999999999973 78999998877644322 12221
Q ss_pred HHHhhCcceeEecccc--ccHHH----HHHHHHHhh-------hhhchHHHHHHhhCCCc---cchhhHhHHHHHHH---
Q 017380 220 WAERTGCEIVVAEGEK--AKASS----VLSQAVKRG-------KEQGFDIVLCDTSGRLH---TNYSLMEELVACKK--- 280 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~--~~~~~----~~~~~~~~~-------~~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r--- 280 (372)
+.. .+.+ +++.+. ..+.. .+.+.+... ..+.+.. +++.+|+.+ ..++++.+||+||+
T Consensus 87 r~~--~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~-~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 87 VGA--EVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAID-LLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred hCC--CEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 112 2333 444431 22211 111222110 0112333 346788864 35788999999999
Q ss_pred HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCc
Q 017380 281 AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGE 353 (372)
Q Consensus 281 ~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge 353 (372)
+||||++.+|+ +||+|| |++||+..+.++++ +|.++.. ..|.++|+||||++.. +.++..|+
T Consensus 163 ~iArAL~~~P~--llilDEPts~LD~~~~~~il~--------lL~~l~~-~~g~til~iTHdl~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 163 MIAMAIACRPK--LLIADEPTTALDVTIQAQIIE--------LLLELQQ-KENMALVLITHDLALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred HHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999 999999 99999999988888 8888863 3588999999999875 56778898
Q ss_pred ccCC
Q 017380 354 GVED 357 (372)
Q Consensus 354 ~v~D 357 (372)
.+++
T Consensus 232 ive~ 235 (326)
T PRK11022 232 VVET 235 (326)
T ss_pred EEEE
Confidence 8754
No 107
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.5e-26 Score=211.01 Aligned_cols=177 Identities=16% Similarity=0.113 Sum_probs=128.2
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... ..+....+ +
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-----~~~~~~~~--~- 78 (204)
T PRK13538 7 LACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-----DEYHQDLL--Y- 78 (204)
T ss_pred EEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-----HHhhhheE--E-
Confidence 444555545689999999999999999999999999999999999999999999776643211 11112221 1
Q ss_pred EeccccccHHHHHHHHHHhh-------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 230 VAEGEKAKASSVLSQAVKRG-------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
+.+.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ .||+|++.+|+ +|+|||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~--llllDE 155 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWE-ALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP--LWILDE 155 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHH-HHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 22222222211222222110 1122333 34678888777889999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK 347 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~ 347 (372)
|+|+|+..+..+.. ++.++. .++.++|++||+......
T Consensus 156 Pt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 156 PFTAIDKQGVARLEA--------LLAQHA--EQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecChhhhcc
Confidence 99999999988877 888775 457899999999876543
No 108
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-26 Score=225.44 Aligned_cols=194 Identities=15% Similarity=0.196 Sum_probs=138.3
Q ss_pred HHHHHhc----cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh----hcCCeEEEeeccccchhhhhHHHHH
Q 017380 149 SVLDLLT----KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK----NEGAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 149 ~l~~~~~----~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~----~~~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
+|.+.|. ...+++++||++.+|++++|+|+||||||||+++|+|+++ +++|+|.+.+.+..+....+....+
T Consensus 8 ~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 87 (330)
T PRK15093 8 NLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLV 87 (330)
T ss_pred eeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHh
Confidence 4555563 2346899999999999999999999999999999999986 5789999988776543321111111
Q ss_pred HHhhCcceeEecccc--ccHHHHHHHHHHh----------------hhhhchHHHHHHhhCCCc---cchhhHhHHHHHH
Q 017380 221 AERTGCEIVVAEGEK--AKASSVLSQAVKR----------------GKEQGFDIVLCDTSGRLH---TNYSLMEELVACK 279 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~ 279 (372)
.. .+.+ +++.+. ..+...+.+.+.. .....+.. +++.+|+.+ ..+.++.+||+||
T Consensus 88 ~~--~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 88 GH--NVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIE-LLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred CC--CEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHH-HHHHCCCCChHHHHhCCchhCCHHH
Confidence 12 2333 444432 1222222211110 00112233 346788864 3478899999999
Q ss_pred H---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeee
Q 017380 280 K---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFV 349 (372)
Q Consensus 280 r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i 349 (372)
+ +||+||+.+|+ +||+|| |++||+..+.++++ +|.++.+ ..|.++|+||||+... +.++
T Consensus 164 ~QRv~iArAL~~~P~--llilDEPts~LD~~~~~~i~~--------lL~~l~~-~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 164 CQKVMIAIALANQPR--LLIADEPTNAMEPTTQAQIFR--------LLTRLNQ-NNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred HHHHHHHHHHHCCCC--EEEEeCCCCcCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9 99999999999 999999 99999999988888 8888863 3588999999998776 6677
Q ss_pred ccCcccCC
Q 017380 350 GVGEGVED 357 (372)
Q Consensus 350 ~~Ge~v~D 357 (372)
..|+.+++
T Consensus 233 ~~G~ive~ 240 (330)
T PRK15093 233 YCGQTVET 240 (330)
T ss_pred ECCEEEEE
Confidence 88888743
No 109
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=2.6e-26 Score=212.23 Aligned_cols=192 Identities=19% Similarity=0.261 Sum_probs=132.0
Q ss_pred HHHHHhccC----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKK----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++...|+.. ..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... ....+....
T Consensus 6 ~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~i 84 (228)
T cd03257 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-LRKIRRKEI 84 (228)
T ss_pred eeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh-hHHHhhccE
Confidence 445556543 568999999999999999999999999999999999999999999987665332110 011122222
Q ss_pred CcceeEecccc--ccHHHHHHHHHHh----h----hhhchH---HHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEK--AKASSVLSQAVKR----G----KEQGFD---IVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~--~~~~~~~~~~~~~----~----~~~~~d---~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ + +.+.+. ..+...+.+.+.. . ...... ..+++.+|+. +..+..+.+||+||+ .|||+++
T Consensus 85 ~--~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 85 Q--M-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred E--E-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 2 2 333321 1111111221110 0 001111 1234677874 566888999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
.+|+ +|+||| |+|+|+..+..++. ++.++.. +.|.+||++||++... +.++..|+.+
T Consensus 162 ~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 162 LNPK--LLIADEPTSALDVSVQAQILD--------LLKKLQE-ELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred cCCC--EEEecCCCCCCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999 999999 99999999987777 7887752 3378999999998754 4556667654
No 110
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-26 Score=216.76 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=138.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+..... +. +.++.
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~----~~-~~~i~ 83 (255)
T PRK11300 9 SGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ----IA-RMGVV 83 (255)
T ss_pred eeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHH----HH-hcCeE
Confidence 45666676656789999999999999999999999999999999999999999999876653321111 11 12222
Q ss_pred eeEeccccccHHHHHHHHHHhh-------------------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH--
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-------------------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK-- 280 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r-- 280 (372)
+ +.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+
T Consensus 84 ~-~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qr 161 (255)
T PRK11300 84 R-TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT-WLERVGLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred E-eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH-HHHhCChhhhhhCChhhCCHHHHHH
Confidence 2 23333222211222211100 0011222 34677888778899999999999
Q ss_pred -HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccC
Q 017380 281 -AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVG 352 (372)
Q Consensus 281 -~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~G 352 (372)
.||++++.+|+ +|+||| |+|+|+..+..+.+ +|.++.. ..|.+||++||++... +.++.+|
T Consensus 162 v~la~al~~~p~--llllDEPt~~LD~~~~~~l~~--------~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 162 LEIARCMVTQPE--ILMLDEPAAGLNPKETKELDE--------LIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred HHHHHHHhcCCC--EEEEcCCccCCCHHHHHHHHH--------HHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999 999999 99999999988887 8888752 3378999999999875 5567788
Q ss_pred cccC
Q 017380 353 EGVE 356 (372)
Q Consensus 353 e~v~ 356 (372)
+.+.
T Consensus 231 ~i~~ 234 (255)
T PRK11300 231 TPLA 234 (255)
T ss_pred eEEe
Confidence 8763
No 111
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1.3e-26 Score=229.73 Aligned_cols=187 Identities=17% Similarity=0.130 Sum_probs=145.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... . +.++.
T Consensus 18 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~------~--~r~ig 89 (375)
T PRK09452 18 RGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA------E--NRHVN 89 (375)
T ss_pred EEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH------H--HCCEE
Confidence 567777876667889999999999999999999999999999999999999999998876543211 1 12333
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++....+|...+++.+.... .+.++. +++.+|+.+..++++.+||+||+ +|||||+.+|+ +
T Consensus 90 ~-vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~--l 165 (375)
T PRK09452 90 T-VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVME-ALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK--V 165 (375)
T ss_pred E-EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 3 556555555444444443211 112333 34788999989999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| +++||...+..+.. .|.++.. ..|.++|++|||.... +..+.+|+.+
T Consensus 166 lLLDEP~s~LD~~~r~~l~~--------~L~~l~~-~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQN--------ELKALQR-KLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999977777 7777753 3588999999998864 5677888876
No 112
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-26 Score=220.79 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=136.3
Q ss_pred HHHHHhcc-----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTK-----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~-----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|++ ..+++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+............+..
T Consensus 7 ~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~- 85 (287)
T PRK13641 7 NVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRK- 85 (287)
T ss_pred EEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-
Confidence 44556653 247899999999999999999999999999999999999999999998776532100000111222
Q ss_pred hCcceeEeccc--cccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHh
Q 017380 224 TGCEIVVAEGE--KAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 224 ~~v~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~ 287 (372)
.+.+ +.+.+ ...+ ..+.+.+... ....+.. +++.+|+. ...++.+.+||+||+ +|||+++
T Consensus 86 -~ig~-v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 86 -KVSL-VFQFPEAQLFE-NTVLKDVEFGPKNFGFSEDEAKEKALK-WLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred -ceEE-EEeChhhhhcc-chHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 2322 33332 1111 1222222210 0112233 34678886 567889999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+|+|+..+..+.. ++.++. .+|.+||++||+++.. +.++..|+.+.
T Consensus 162 ~~p~--lLlLDEPt~gLD~~~~~~l~~--------~l~~l~--~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 162 YEPE--ILCLDEPAAGLDPEGRKEMMQ--------LFKDYQ--KAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred cCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999 99999999987777 888875 4588999999999864 56778887763
No 113
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=1.5e-26 Score=223.27 Aligned_cols=185 Identities=16% Similarity=0.214 Sum_probs=137.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ..+....++
T Consensus 7 ~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-----~~~~~~ig~-- 79 (301)
T TIGR03522 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-----KEVQRNIGY-- 79 (301)
T ss_pred EEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-----HHHHhceEE--
Confidence 4556676666789999999999999999999999999999999999999999999876653311 111122222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.+...+...+.+.+... .....+. +++.+|+.+..++++.+||+||+ .+|+|++.+|+ +|
T Consensus 80 -~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~--ll 155 (301)
T TIGR03522 80 -LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE-MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK--VL 155 (301)
T ss_pred -ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33333222221222222110 0122333 44678998888999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..++. .+..+. . +.+||++||++... +.++.+|+.+
T Consensus 156 iLDEPt~gLD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRN--------VIKNIG--K-DKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHhc--C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 99999999988887 777775 3 68999999999853 5567788776
No 114
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=2.5e-26 Score=209.12 Aligned_cols=175 Identities=19% Similarity=0.129 Sum_probs=126.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+|+||+|||||++.|+|+++|++|+|.+.+.+..... ..+... +.+
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~~--i~~ 77 (201)
T cd03231 5 ELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-----DSIARG--LLY 77 (201)
T ss_pred EEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-----HHhhhh--eEE
Confidence 3445566556789999999999999999999999999999999999999999999776642211 111122 222
Q ss_pred eEeccccccHHHHHHHHHHhh----hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
+.+.....+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||+ ++||+++.+|+ +|+||| |
T Consensus 78 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~--llllDEPt 153 (201)
T cd03231 78 -LGHAPGIKTTLSVLENLRFWHADHSDEQVEE-ALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP--LWILDEPT 153 (201)
T ss_pred -eccccccCCCcCHHHHHHhhcccccHHHHHH-HHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC--EEEEeCCC
Confidence 33332222212223322211 1122333 34677888777889999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
+|+|+..+..+.+ ++.++. .+|.++|++||+...
T Consensus 154 ~~LD~~~~~~l~~--------~l~~~~--~~g~tiii~sH~~~~ 187 (201)
T cd03231 154 TALDKAGVARFAE--------AMAGHC--ARGGMVVLTTHQDLG 187 (201)
T ss_pred CCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCchh
Confidence 9999999987777 777765 458899999997543
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-26 Score=220.67 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=133.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+............+....++ +.+.+ .
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~---v~q~~~~~ 97 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGI---VFQFPEHQ 97 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEE---EeeCchhh
Confidence 478999999999999999999999999999999999999999999987764211000011122233332 34432 1
Q ss_pred ccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 236 AKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 236 ~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
..+ ..+.+.+... . ...++.+ ++.+|+. +..++.+.+||+||+ +|||+|+.+|+ +|+||| |
T Consensus 98 l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~-l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~--llllDEPt 173 (290)
T PRK13634 98 LFE-ETVEKDICFGPMNFGVSEEDAKQKAREM-IELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPE--VLVLDEPT 173 (290)
T ss_pred hhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC--EEEEECCc
Confidence 222 2333333211 0 1123333 4678986 556888999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+|||+..+..++. ++.++.. ..|.|||++||+++.. +..+.+|+.+.+
T Consensus 174 ~~LD~~~~~~l~~--------~L~~l~~-~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 174 AGLDPKGRKEMME--------MFYKLHK-EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred ccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999988887 8888752 3488999999998864 556778887643
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-26 Score=217.56 Aligned_cols=187 Identities=17% Similarity=0.235 Sum_probs=135.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+..+.... .+....+ +
T Consensus 7 ~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~----~~~~~i~--~ 80 (255)
T PRK11231 7 NLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR----QLARRLA--L 80 (255)
T ss_pred eEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHH----HHhhheE--E
Confidence 455567655678999999999999999999999999999999999999999999977654221111 1111222 2
Q ss_pred eEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..+..+.+||+||+ .||||++.+|+
T Consensus 81 -~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 81 -LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ-AMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred -ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHH-HHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 23322211111122222110 0112222 34677888778889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+.. ++.++. .+|.++|++||++... +.++.+|+.+
T Consensus 159 --llllDEP~~~LD~~~~~~l~~--------~l~~l~--~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 159 --VVLLDEPTTYLDINHQVELMR--------LMRELN--TQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred --EEEEcCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 999999 99999999987777 777775 3478999999998863 5677888766
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=3.4e-26 Score=213.68 Aligned_cols=188 Identities=19% Similarity=0.230 Sum_probs=135.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+....... + .. +.++.+
T Consensus 7 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-~--~~--~~~i~~ 81 (242)
T TIGR03411 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEH-Q--IA--RAGIGR 81 (242)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHH-H--HH--hcCeeE
Confidence 455666655578999999999999999999999999999999999999999999987654322111 0 11 112222
Q ss_pred eEeccccccHHHHHHHHHHhh------------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 229 VVAEGEKAKASSVLSQAVKRG------------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..+..+.+||+|++ .||||++
T Consensus 82 -~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 82 -KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEE-VLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred -eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 33332222211122211110 0112233 34678888878889999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+|+|+..+..+++ ++.++. . +.++|++||+++.. +..+.+|+.+.
T Consensus 160 ~~p~--~lllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 160 QDPK--LLLLDEPVAGMTDEETEKTAE--------LLKSLA--G-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred cCCC--EEEecCCccCCCHHHHHHHHH--------HHHHHh--c-CCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 9999 999999 99999999988877 788775 2 58999999998864 55677888763
No 118
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-26 Score=221.21 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=136.7
Q ss_pred HHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+ ...+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+....++
T Consensus 9 ~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~i~~- 83 (274)
T PRK13647 9 DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE----KWVRSKVGL- 83 (274)
T ss_pred EEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH----HHHHhhEEE-
Confidence 4445564 3457899999999999999999999999999999999999999999998766422111 112222222
Q ss_pred eeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.+. ..+...+.+.+... ..+.++. +++.+|+.+..++.+.+||+||+ .||||++.+|+
T Consensus 84 --v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~-- 158 (274)
T PRK13647 84 --VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE-ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD-- 158 (274)
T ss_pred --EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHH-HHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC--
Confidence 333321 11111222222211 0112333 34677998888899999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+.+++. ++.++. .+|.|||++||+++.. +..+.+|+.+.
T Consensus 159 llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLME--------ILDRLH--NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 888886 3488999999999864 45677888764
No 119
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=2.8e-26 Score=215.72 Aligned_cols=193 Identities=17% Similarity=0.208 Sum_probs=137.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh-------h--hhHHHH
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA-------A--SDQLEI 219 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~-------a--~eql~~ 219 (372)
++...|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. . ......
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~ 84 (252)
T TIGR03005 5 DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84 (252)
T ss_pred EEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHH
Confidence 4455666556789999999999999999999999999999999999999999999876653221 0 001111
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHH
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
+.. .+.+ +.+.....+...+.+.+... ....+... ++.+|+.+..++.+.+||+||+ +|||+
T Consensus 85 ~~~--~i~~-v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 85 MRN--KIGM-VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL-LDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred Hhh--CeEE-EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 222 2222 44443333222222222210 01122333 4677887777889999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.++|++||+++.. +.++.+|+.++
T Consensus 161 l~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 161 LAMRPK--VMLFDEVTSALDPELVGEVLN--------VIRRLAS-EHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred HHcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999 999999 99999999988777 7887752 3478999999998764 45677887763
No 120
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.9e-26 Score=211.00 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=130.8
Q ss_pred HHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeE
Q 017380 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVV 230 (372)
Q Consensus 151 ~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~ 230 (372)
.+.|+....++++||++++| +++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ..+....+ + +
T Consensus 7 ~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~~i~--~-~ 77 (211)
T cd03264 7 TKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-----QKLRRRIG--Y-L 77 (211)
T ss_pred EEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-----HHHHhheE--E-e
Confidence 34455445688999999999 99999999999999999999999999999999876653221 11222222 2 3
Q ss_pred eccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 231 AEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
.+.+...+...+.+.+... ..+.++. +++.+|+.+..+..+.+||+||+ .||||++.+|+ +|+|
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--llll 154 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE-VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS--ILIV 154 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC--EEEE
Confidence 3333222211222221110 0112333 34677888777889999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|| |+|+|+..+..+++ ++.++. . +.++|++||++... +.++.+|+.+
T Consensus 155 DEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 155 DEPTAGLDPEERIRFRN--------LLSELG--E-DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred cCCcccCCHHHHHHHHH--------HHHHHh--C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99 99999999988877 888875 3 48999999998764 4455666654
No 121
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=4.1e-26 Score=230.72 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=155.1
Q ss_pred HHHHHHhcc-----------CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhH
Q 017380 148 NSVLDLLTK-----------KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 216 (372)
Q Consensus 148 ~~l~~~~~~-----------~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eq 216 (372)
++|.+.|.. ..+++++||++.+||+++|||++||||||+.+.|+|+++|++|+|.+.+.| .... ...
T Consensus 284 ~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~-~~~ 361 (539)
T COG1123 284 RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLT-GGE 361 (539)
T ss_pred eeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccc-cch
Confidence 467777763 245899999999999999999999999999999999999999999998887 3322 222
Q ss_pred HHHHHHhhCcceeEecc--ccccHHHHHHHHHHhh----------hh-hchHHHHHHhhCCCc-cchhhHhHHHHHHH--
Q 017380 217 LEIWAERTGCEIVVAEG--EKAKASSVLSQAVKRG----------KE-QGFDIVLCDTSGRLH-TNYSLMEELVACKK-- 280 (372)
Q Consensus 217 l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~----------~~-~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r-- 280 (372)
++....+..+ ++++ ...+|...+.+.+... .. +.++. +.+.+|+.. ..++++.|||||||
T Consensus 362 ~~~~r~~~Qm---vFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~-ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 362 LRRLRRRIQM---VFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred hhhhhhheEE---EEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHH-HHHHcCCCHHHHhcCchhcCcchhHH
Confidence 3333333333 3333 3345555454443321 11 12333 447889986 57999999999999
Q ss_pred -HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccC
Q 017380 281 -AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVG 352 (372)
Q Consensus 281 -~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~G 352 (372)
+|||||+.+|+ +||+|| ++.||+..++.+++ .+.++.. +-|.+.|+||||+.+. +..+..|
T Consensus 438 vaIARALa~~P~--lli~DEp~SaLDvsvqa~Vln--------Ll~~lq~-e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 438 VAIARALALEPK--LLILDEPVSALDVSVQAQVLN--------LLKDLQE-ELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred HHHHHHHhcCCC--EEEecCCccccCHHHHHHHHH--------HHHHHHH-HhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 99999999999 999999 99999999999998 8999874 5689999999999986 6778899
Q ss_pred cccCC-----CCCCCHHHHHHHhc
Q 017380 353 EGVED-----LQPFDAEAFVNAIF 371 (372)
Q Consensus 353 e~v~D-----l~~~~~~~~v~~l~ 371 (372)
+.|+. +.......|.++|+
T Consensus 507 ~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 507 RIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred eEEEeCCHHHHhcCCCChHHHHHH
Confidence 99853 33333445555443
No 122
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-26 Score=217.83 Aligned_cols=184 Identities=17% Similarity=0.221 Sum_probs=132.9
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... ...+ +
T Consensus 7 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------~~~~--~- 74 (255)
T PRK11248 7 LYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG---------AERG--V- 74 (255)
T ss_pred EEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------CcEE--E-
Confidence 444565555689999999999999999999999999999999999999999999776642210 0111 1
Q ss_pred EeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 230 VAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~--lll 151 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQ-MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQ--LLL 151 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHH-HHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC--EEE
Confidence 23322222211122221110 0112333 34688988777889999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec--cCcccCC
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG--VGEGVED 357 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~--~Ge~v~D 357 (372)
||| |+|+|+..+..+.. +|.++.. ..|.+||++||+++.. +.++. .|+.+++
T Consensus 152 LDEPt~~LD~~~~~~l~~--------~L~~~~~-~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 152 LDEPFGALDAFTREQMQT--------LLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred EeCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 999 99999999988777 7877732 3478999999998764 45665 4776654
No 123
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=3.8e-26 Score=211.45 Aligned_cols=188 Identities=14% Similarity=0.049 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 143 KDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 143 ~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+.+..+++...|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.+... .
T Consensus 21 ~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---------~ 91 (224)
T cd03220 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG---------L 91 (224)
T ss_pred hhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc---------c
Confidence 3466788999999888899999999999999999999999999999999999999999999776542110 0
Q ss_pred hhCcceeEeccccccHHHHHHHHH--Hhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAV--KRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
...+ .......+......... .... ...... +.+.+|+.+..++.+.+||+||+ +|||+++.+|+ +|+
T Consensus 92 ~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~--lll 165 (224)
T cd03220 92 GGGF---NPELTGRENIYLNGRLLGLSRKEIDEKIDE-IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPD--ILL 165 (224)
T ss_pred cccC---CCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC--EEE
Confidence 0011 11111111111000000 0000 111222 33677888877889999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
||| |+|+|+..+..+++ ++.++. .++.+||++||+.+.. +..+.+|+.+
T Consensus 166 lDEP~~gLD~~~~~~~~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQR--------RLRELL--KQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred EeCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999 99999999988777 777775 3478999999998764 3455666654
No 124
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.5e-26 Score=219.19 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=134.3
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.+............+...+++ +++.+ .
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~---v~q~~~~~ 97 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGM---VFQFPESQ 97 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEE---EecChHhc
Confidence 478999999999999999999999999999999999999999999987665321111112223333333 44432 1
Q ss_pred ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 236 AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 236 ~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
..+ ..+.+.+... ....+.. +++.+|+. +..++.+.+||+||+ +|||+|+.+|+ +|+||| |
T Consensus 98 l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~--illlDEPt 173 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNFKMNLDEVKNYAHR-LLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD--IIVLDEPT 173 (286)
T ss_pred cch-hhHHHHHHhhHHHcCCCHHHHHHHHHH-HHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCC--EEEEECCc
Confidence 222 2333333211 0111233 34677886 567788999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+|+..+..+.. ++.++.. ..|.|||++||+++.. +..+..|+.+.
T Consensus 174 ~~LD~~~~~~l~~--------~l~~l~~-~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 174 AGLDPQSKRQVMR--------LLKSLQT-DENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred ccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999988887 8888752 3588999999999864 55677888763
No 125
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.2e-26 Score=218.75 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=137.7
Q ss_pred HHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 149 SVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 149 ~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
++.+.|++ ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... ..+....+
T Consensus 9 ~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~i~ 84 (279)
T PRK13650 9 NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV----WDIRHKIG 84 (279)
T ss_pred eEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HHHHhhce
Confidence 44555642 237899999999999999999999999999999999999999999998876533211 11222333
Q ss_pred cceeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 226 CEIVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 226 v~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ +.+.+. ..+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ +||||++.+|+
T Consensus 85 --~-v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 85 --M-VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE-ALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred --E-EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHH-HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2 344321 12212223332211 0112333 34678998888999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+||||| |+|||+..+..++. ++.++.. ..|.|||++||+++.. +.++.+|+.+.
T Consensus 161 --lLlLDEPt~~LD~~~~~~l~~--------~l~~l~~-~~g~tilivtH~~~~~~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 161 --IIILDEATSMLDPEGRLELIK--------TIKGIRD-DYQMTVISITHDLDEVALSDRVLVMKNGQVES 220 (279)
T ss_pred --EEEEECCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 8888752 3488999999998764 45667787663
No 126
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=1.8e-26 Score=214.91 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=135.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+ . .+.+
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~----~~~-~--~i~~ 78 (236)
T TIGR03864 6 GLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR----AAL-A--RLGV 78 (236)
T ss_pred eeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh----hhh-h--hEEE
Confidence 44555655557899999999999999999999999999999999999999999997765422111 111 1 1222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+ +|
T Consensus 79 -~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~--ll 154 (236)
T TIGR03864 79 -VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA-LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA--LL 154 (236)
T ss_pred -eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33332221111122222110 0112233 34677888777889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+||| |+|+|+..+..+.. ++.++.. .+|.++|++||+++.. +.++.+|+.+++
T Consensus 155 llDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVA--------HVRALCR-DQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred EEcCCccCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 9999 99999999988887 7777752 3478999999999864 556778877643
No 127
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=2.9e-26 Score=216.32 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=138.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh---------hhhHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA---------ASDQLE 218 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~---------a~eql~ 218 (372)
+++...|++...++++||++++|++++|+|+||+|||||+++|+|+++|++|+|.+.+.+..... ...+..
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLR 88 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHH
Confidence 45666776556789999999999999999999999999999999999999999999776542210 001122
Q ss_pred HHHHhhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccc-hhhHhHHHHHHH---HHH
Q 017380 219 IWAERTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTN-YSLMEELVACKK---AVG 283 (372)
Q Consensus 219 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~r---~iA 283 (372)
.+... +.+ +.+.....+...+++.+... ....... +++.+|+.+.. ++.+.+||+||+ +||
T Consensus 89 ~~~~~--i~~-v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 89 LLRTR--LTM-VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred HHhhc--eEE-EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 23232 322 44443333222222222110 0112223 34677887654 778999999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
||++.+|+ +|+||| |+|+|+..+..++. ++.++. .+|.+||++||+.... +..+..|+.+.
T Consensus 165 ral~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 165 RALAMEPE--VLLFDEPTSALDPELVGEVLR--------IMQQLA--EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred HHHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999 999999 99999999988887 888886 4589999999998764 45677888763
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3e-26 Score=209.78 Aligned_cols=184 Identities=19% Similarity=0.218 Sum_probs=131.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++.. .++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... ... .+.+
T Consensus 5 ~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~------~~~--~i~~ 74 (211)
T cd03298 5 KIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP------ADR--PVSM 74 (211)
T ss_pred eEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH------hHc--cEEE
Confidence 3344554322 38999999999999999999999999999999999999999997766532211 011 2222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++++.+||+||+ .|||+++.+|+ +|
T Consensus 75 -~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~--ll 150 (211)
T cd03298 75 -LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEV-ALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP--VL 150 (211)
T ss_pred -EecccccCCCCcHHHHHhcccccccCccHHHHHHHHH-HHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC--EE
Confidence 34443333222222322210 0112333 34677888778889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..+.. ++.++.. ..+.++|++||++... +..+.+|+.+
T Consensus 151 llDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 151 LLDEPFAALDPALRAEMLD--------LVLDLHA-ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 9999 99999999988877 7777752 3488999999999753 4556677654
No 129
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-26 Score=217.88 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=135.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ... ...+...+++
T Consensus 6 ~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~-~~~~~~~i~~-- 81 (271)
T PRK13638 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS-KRG-LLALRQQVAT-- 81 (271)
T ss_pred EEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccc-cCC-HHHHHhheEE--
Confidence 344556655678999999999999999999999999999999999999999999987664211 000 1112222222
Q ss_pred eEeccccc-cHHHHHHHHHHh----h-----h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 229 VVAEGEKA-KASSVLSQAVKR----G-----K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~~~----~-----~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.+.. .....+.+.+.. . . ...++. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +
T Consensus 82 -v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~--l 157 (271)
T PRK13638 82 -VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE-ALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR--Y 157 (271)
T ss_pred -EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC--E
Confidence 3332210 010111111110 0 0 111222 34677888778889999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| |+|+|+..+..++. +|.++. .+|.+||++||+++.. +..+.+|+.+.
T Consensus 158 llLDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIA--------IIRRIV--AQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred EEEeCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999 99999999988887 888876 3578999999998764 45677887663
No 130
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.3e-26 Score=201.22 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=144.0
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhh---HHHHHHHhh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASD---QLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~e---ql~~~~~~~ 224 (372)
+++.+.|+...+++++|+++++|.+++|+||||+|||||+.+++.++++++|+|.+.+.+.......+ .+..+.+..
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 58999999999999999999999999999999999999999999999999999999988764332221 111222211
Q ss_pred CcceeEec----cccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 225 GCEIVVAE----GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 225 ~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
.+...+.. ..+.+|.+..+ +.......++..+ +.+++....+++..+|||||| .||+.++++.+ +++|
T Consensus 85 ~i~~rlTV~dLv~FGRfPYSqGR--lt~eD~~~I~~ai-eyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd--yvlL 159 (252)
T COG4604 85 HINSRLTVRDLVGFGRFPYSQGR--LTKEDRRIINEAI-EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD--YVLL 159 (252)
T ss_pred hhhheeEHHHHhhcCCCcccCCC--CchHHHHHHHHHH-HHhcccchHHHhHHhcccchhhhhhhheeeeccCc--EEEe
Confidence 11110000 00111111000 0000112233334 677888899999999999999 89999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee------eeccCccc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK------FVGVGEGV 355 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~------~i~~Ge~v 355 (372)
|| .++||......++. ++.++.+ +-|+|+++|.||.+++-. -+.+|+.+
T Consensus 160 DEPLNNLDmkHsv~iMk--------~Lrrla~-el~KtiviVlHDINfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 160 DEPLNNLDMKHSVQIMK--------ILRRLAD-ELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215 (252)
T ss_pred cCcccccchHHHHHHHH--------HHHHHHH-HhCCeEEEEEecccHHHhhhhheeeecCCEEE
Confidence 99 99999999999998 8999875 669999999999999844 46789887
No 131
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-26 Score=223.99 Aligned_cols=184 Identities=16% Similarity=0.235 Sum_probs=136.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++.+|++++|+|+||||||||++.|+|+++|++|+|.+.+.+..+... .+++.+... +.+ +.+.+ .
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~-~~~~~~r~~--i~~-v~Q~~~~~ 104 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP-EAQKLLRQK--IQI-VFQNPYGS 104 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH-HHHHHHhCC--EEE-EEcCchhh
Confidence 46899999999999999999999999999999999999999999998877654322 223333333 333 44543 1
Q ss_pred ccHHHHHHHHHH----h----h---hhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 236 AKASSVLSQAVK----R----G---KEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 236 ~~~~~~~~~~~~----~----~---~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
..+...+.+.+. . . ....+.. +++.+|+.+ ..++++.+||+||+ +|||||+.+|+ +||+||
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~--lLilDEP 181 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSAAERREKALA-MMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD--VVVADEP 181 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCHHHHHHHHHH-HHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC--EEEEECC
Confidence 222212221111 0 0 0112333 346788863 56889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
|++||...+.++++ +|.++.. ..|.++|+||||+... +.++..|+.+++
T Consensus 182 ts~LD~~~~~~i~~--------lL~~l~~-~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 182 VSALDVSVQAQVLN--------LMMDLQQ-ELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred CccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999988888 8888753 4588999999999875 567788888753
No 132
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=9.4e-26 Score=210.35 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 144 DALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 144 ~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
..++.-+.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... ..+...
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~ 95 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-----KKFLRR 95 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-----hhhccc
Confidence 445555567778777899999999999999999999999999999999999999999999765532111 111112
Q ss_pred hCcceeEe-ccccccHHHHHHHHHHh------h---h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 224 TGCEIVVA-EGEKAKASSVLSQAVKR------G---K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 224 ~~v~~~~~-~~~~~~~~~~~~~~~~~------~---~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
.+ + +. +.....+...+.+.+.. . . ..... .+.+.+|+.+..+..+.+||+||+ .+|++++.+
T Consensus 96 i~--~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 171 (236)
T cd03267 96 IG--V-VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLD-ELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHE 171 (236)
T ss_pred EE--E-EcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 22 1 21 11111111111111100 0 0 11122 244677888777889999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+ +|+||| |+|+|+..+..+.. +|.++.. ..+.+||++||+.... +..+.+|+.+
T Consensus 172 p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 172 PE--ILFLDEPTIGLDVVAQENIRN--------FLKEYNR-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CC--EEEEcCCCCCCCHHHHHHHHH--------HHHHHHh-cCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 99 999999 99999999988887 7887752 3478999999999753 4456677654
No 133
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.2e-26 Score=212.43 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=135.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..+. ..+.+
T Consensus 8 ~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---~~~~--~~i~~ 82 (241)
T PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH---ARAR--RGIGY 82 (241)
T ss_pred CcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH---HHHH--hCeEE
Confidence 555667655678999999999999999999999999999999999999999999987665322111 1111 12222
Q ss_pred eEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.....+...+.+.+... .....+. +++.+|+.+..+..+.+||+||+ .|||+++.+|+ +
T Consensus 83 -~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--l 158 (241)
T PRK10895 83 -LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE-LMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK--F 158 (241)
T ss_pred -eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHH-HHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 33333222211122211110 0112333 34677887777888999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| |+|+|+..+..+.. ++.++. .+|.++|++||+.+.. +..+..|+.+.
T Consensus 159 lllDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKR--------IIEHLR--DSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred EEEcCCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 99999 99999999977776 777775 4588999999998543 55677888763
No 134
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.2e-26 Score=220.56 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=133.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh---------------h-----hhHH
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA---------------A-----SDQL 217 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~---------------a-----~eql 217 (372)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... . ....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4689999999999999999999999999999999999999999999765431100 0 0012
Q ss_pred HHHHHhhCcceeEeccc-cccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HH
Q 017380 218 EIWAERTGCEIVVAEGE-KAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AV 282 (372)
Q Consensus 218 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~i 282 (372)
..+...+++ +++.+ .......+++.+... ..+.+..++ +.+|+. +..++.+.+||+||+ +|
T Consensus 101 ~~~~~~ig~---v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l-~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 101 KEIRRRVGV---VFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred HHHHhceEE---EeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHH-HHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 223333333 34432 111112333333211 011233334 678996 678899999999999 99
Q ss_pred HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 283 GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 283 Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|++|+.+|+ +|+||| |+|||+..+..+.. +|.++. ..|.+||++||+++.. +..+.+|+.+
T Consensus 177 A~aL~~~P~--lLlLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 177 AGILAMEPD--FLVFDEPTAGLDPQGVKEILE--------IFDNLN--KQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred HHHHHhCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999 99999999987777 888886 4589999999999754 5567888876
Q ss_pred CC
Q 017380 356 ED 357 (372)
Q Consensus 356 ~D 357 (372)
.+
T Consensus 245 ~~ 246 (305)
T PRK13651 245 KD 246 (305)
T ss_pred EE
Confidence 44
No 135
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-26 Score=217.93 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=137.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... . .+... +.
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~---~~~~~--i~ 88 (265)
T PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-K---AFARK--VA 88 (265)
T ss_pred eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH-H---HHhhh--eE
Confidence 466667765567899999999999999999999999999999999999999999998766432111 1 11111 22
Q ss_pred eeEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+ +.+.....+...+.+.+... ....++. +++.+|+.+..+.++.+||+||+ .|||+++.+|
T Consensus 89 ~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 166 (265)
T PRK10575 89 Y-LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE-AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS 166 (265)
T ss_pred E-eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHH-HHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 2 33332222211222222210 0112233 33677887777888999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+ +|+||| |+|+|+..+..+.. ++.++.. ..|.++|++||++... +.++.+|+.+.
T Consensus 167 ~--lllLDEPt~~LD~~~~~~~~~--------~l~~l~~-~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 167 R--CLLLDEPTSALDIAHQVDVLA--------LVHRLSQ-ERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred C--EEEEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9 999999 99999999987777 7777752 3478999999998754 55778888763
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.2e-26 Score=214.09 Aligned_cols=189 Identities=17% Similarity=0.197 Sum_probs=135.5
Q ss_pred HHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|++ ...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+... ..+.. .+.
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~--~i~ 78 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP----VELRR--KIG 78 (242)
T ss_pred EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh----HHhhc--ceE
Confidence 34455655 456899999999999999999999999999999999999999999997766432211 11111 222
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCc--cchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLH--TNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~--~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ +.+.+...+...+.+.+... ....+.. +++.+|+.+ ..++.+.+||+||+ +|||+++.+|+
T Consensus 79 ~-~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~- 155 (242)
T cd03295 79 Y-VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADE-LLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP- 155 (242)
T ss_pred E-EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC-
Confidence 2 33333332221222222110 0112233 346778875 67888999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+.. ++.++.. ..|.+||++||+.+.. +..+.+|+.++
T Consensus 156 -llllDEPt~~LD~~~~~~l~~--------~L~~~~~-~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 156 -LLLMDEPFGALDPITRDQLQE--------EFKRLQQ-ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred -EEEecCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999977777 7888752 3478999999999853 55677887764
No 137
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.3e-26 Score=219.54 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=132.5
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc-c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-A 236 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-~ 236 (372)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... .. ...+....++ +++.+. .
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~-~~~~~~~ig~---v~q~~~~~ 95 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK-VK-LSDIRKKVGL---VFQYPEYQ 95 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-cc-HHHHhhceEE---EecCchhc
Confidence 4789999999999999999999999999999999999999999999876653211 00 1112223332 334321 1
Q ss_pred cHHHHHHHHHHhh----------hhhchHHHHHHhhCCC--ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 237 KASSVLSQAVKRG----------KEQGFDIVLCDTSGRL--HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 237 ~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~--~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
.....+.+.+... ..+.++. +++.+|+. +..++.+.+||+||+ .|||||+.+|+ +|+||| |
T Consensus 96 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~--llllDEPt 172 (287)
T PRK13637 96 LFEETIEKDIAFGPINLGLSEEEIENRVKR-AMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK--ILILDEPT 172 (287)
T ss_pred cccccHHHHHHhHHHHCCCCHHHHHHHHHH-HHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC--EEEEECCc
Confidence 1111222322211 0112333 34677886 567888999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|||+..+.+++. ++.++.. ..|.|||++||+++.. +.++.+|+.+.
T Consensus 173 ~gLD~~~~~~l~~--------~l~~l~~-~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 173 AGLDPKGRDEILN--------KIKELHK-EYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred cCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999988887 8888753 3488999999998864 45677888764
No 138
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=232.38 Aligned_cols=189 Identities=17% Similarity=0.204 Sum_probs=139.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+........ .+. ..+.
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~---~~~--~~i~ 82 (501)
T PRK10762 8 KGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKS---SQE--AGIG 82 (501)
T ss_pred eeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH---HHh--CCEE
Confidence 35667777656789999999999999999999999999999999999999999999876653211111 111 1232
Q ss_pred eeEeccccccHHHHHHHHHHhh-------------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-------------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+ +.+.....+...+.+.+... . ...+.. +++.+|+.+..++++.+||+||+ .||+|++.+|
T Consensus 83 ~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 83 I-IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADK-LLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred E-EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHH-HHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2 33333222222222222110 0 112233 44788998888899999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+ +|+||| |+|||+..+..+.+ ++.++. .+|.+||++||+++.. +.++.+|+.+
T Consensus 161 ~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 161 K--VIIMDEPTDALTDTETESLFR--------VIRELK--SQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred C--EEEEeCCcCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 9 999999 99999999988887 888885 4588999999998764 5567888876
No 139
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=4.8e-26 Score=206.59 Aligned_cols=173 Identities=17% Similarity=0.068 Sum_probs=125.3
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|+....++++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+..... ..+....+ +
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~~i~--~- 77 (198)
T TIGR01189 6 LACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-----DEPHRNIL--Y- 77 (198)
T ss_pred EEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-----HHhhhheE--E-
Confidence 344555556789999999999999999999999999999999999999999999776643221 11112222 2
Q ss_pred EeccccccHHHHHHHHHHhh------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 230 VAEGEKAKASSVLSQAVKRG------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..+..+.+||+||+ +|||+++.+|+ +++|||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~--llllDEP 154 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIED-ALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP--LWILDEP 154 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHH-HHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 23322222211222222111 0112333 34677888878889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELG 343 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~ 343 (372)
|+|+|+..+..+.. ++.++. .+|.++|++||+..
T Consensus 155 t~~LD~~~~~~l~~--------~l~~~~--~~~~tii~~sH~~~ 188 (198)
T TIGR01189 155 TTALDKAGVALLAG--------LLRAHL--ARGGIVLLTTHQDL 188 (198)
T ss_pred CcCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEEcccc
Confidence 99999999877776 787775 45889999999864
No 140
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.1e-25 Score=195.12 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=145.7
Q ss_pred HHHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+++.+.++. ...+++++|.+++||-++||||+|||||||+..+||+..|++|+|.+.+.+..+...-......+..
T Consensus 10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~ 89 (228)
T COG4181 10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH 89 (228)
T ss_pred hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence 345555543 3458899999999999999999999999999999999999999999999887665432222233344
Q ss_pred hCcceeEeccccccHHHHHHHHHHh---------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKR---------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.++ +++.....|.....+++.- .........+...+|+.+....++.+||||++ +||||++..|+
T Consensus 90 vGf---VFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~ 166 (228)
T COG4181 90 VGF---VFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD 166 (228)
T ss_pred eeE---EEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence 444 5555554444444433221 11122233345689999999999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+.|| |-+||...-.++.. ++-.+.. +.|.|+++||||..++ ...+..|+.++|
T Consensus 167 --vLfADEPTGNLD~~Tg~~iaD--------LlF~lnr-e~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 167 --VLFADEPTGNLDRATGDKIAD--------LLFALNR-ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred --EEeccCCCCCcchhHHHHHHH--------HHHHHhh-hcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999 99999887767766 4444442 6799999999999887 446778887754
No 141
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=5.5e-26 Score=206.62 Aligned_cols=175 Identities=17% Similarity=0.114 Sum_probs=126.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||+||||++++|+|+++|++|+|.+.+.+..+. ...+.+..+ +
T Consensus 6 ~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-----~~~~~~~i~--~ 78 (200)
T PRK13540 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-----LCTYQKQLC--F 78 (200)
T ss_pred EEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----HHHHHhheE--E
Confidence 344556555678999999999999999999999999999999999999999999977654321 011222222 1
Q ss_pred eEeccccccHHHHHHHHHHhh-----hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+.+.....+...+.+.+... .....+.++ +.+++.+..+..+.+||+|++ +|||+++.+|+ +|+|||
T Consensus 79 -~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~--~lilDEP 154 (200)
T PRK13540 79 -VGHRSGINPYLTLRENCLYDIHFSPGAVGITELC-RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK--LWLLDEP 154 (200)
T ss_pred -eccccccCcCCCHHHHHHHHHhcCcchHHHHHHH-HHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 23222222211222222111 111233333 677887666788899999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
|+|+|+..+..+.. ++.++. ..+.++|++||+...
T Consensus 155 ~~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sh~~~~ 189 (200)
T PRK13540 155 LVALDELSLLTIIT--------KIQEHR--AKGGAVLLTSHQDLP 189 (200)
T ss_pred CcccCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCchh
Confidence 99999999988777 788774 458899999999654
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.8e-26 Score=217.45 Aligned_cols=190 Identities=19% Similarity=0.252 Sum_probs=137.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .. +... +.
T Consensus 11 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~---~~~~--i~ 84 (265)
T PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS-KE---VARR--IG 84 (265)
T ss_pred EEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH-HH---Hhhh--eE
Confidence 355666766567899999999999999999999999999999999999999999997766432111 11 1112 22
Q ss_pred eeEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+ +.+.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ .||||++.+|
T Consensus 85 ~-v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 85 L-LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTK-AMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred E-eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHH-HHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 2 33333222211222222110 0112233 34677888777899999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+ +|+||| |+|+|+..+..++. +|.++.. ..|.++|+++|+++.. +.++.+|+.+.
T Consensus 163 ~--llllDEPt~gLD~~~~~~l~~--------~L~~l~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 163 A--IMLLDEPTTWLDISHQIDLLE--------LLSELNR-EKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred C--EEEEeCccccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 999999 99999999988887 8888752 3478999999999853 56677888764
No 143
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=7e-26 Score=213.79 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=135.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc-----ccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD-----TFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d-----~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.+ ..+.... ..... .
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~-~~~~~-~ 87 (258)
T PRK11701 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA-ERRRL-L 87 (258)
T ss_pred eeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH-HHHHH-h
Confidence 456666765567899999999999999999999999999999999999999999998766 4322111 11110 1
Q ss_pred hhCcceeEecccc--ccHHHHHHHHH----H-hh------hhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEK--AKASSVLSQAV----K-RG------KEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~--~~~~~~~~~~~----~-~~------~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAra 285 (372)
+..+.+ +.+... ..+.....+.+ . .. ....+.. +++.+|+.+ ..++.+.+||+||+ +|||+
T Consensus 88 ~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 88 RTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGD-WLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred hcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHH-HHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 112222 333321 11111111111 0 00 0112233 346778864 56788999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+.... +.++.+|+.++
T Consensus 166 l~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 166 LVTHPR--LVFMDEPTGGLDVSVQARLLD--------LLRGLVR-ELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HhcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999 999999 99999999988877 7777752 3488999999998765 56778888763
No 144
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=1.9e-25 Score=207.47 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=125.5
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHH
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 240 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~ 240 (372)
+++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... . .+ + +.+.....+..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~--------~~--~-v~q~~~l~~~~ 69 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-D--------RM--V-VFQNYSLLPWL 69 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-h--------he--E-EecCcccCCCC
Confidence 57899999999999999999999999999999999999999997765432111 0 01 1 22222221111
Q ss_pred HHHHHHHh--------h---h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCC
Q 017380 241 VLSQAVKR--------G---K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 241 ~~~~~~~~--------~---~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD 304 (372)
.+.+.+.. . . ...+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|+||| |+|+|
T Consensus 70 tv~e~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--lllLDEPt~gLD 146 (230)
T TIGR01184 70 TVRENIALAVDRVLPDLSKSERRAIVEE-HIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK--VLLLDEPFGALD 146 (230)
T ss_pred CHHHHHHHHHHhcccCCCHHHHHHHHHH-HHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEcCCCcCCC
Confidence 11111110 0 0 111233 34677888777889999999999 99999999999 999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+..+..+.. ++.++.. +.|.+||++||+++.. +.++.+|+.+
T Consensus 147 ~~~~~~l~~--------~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 147 ALTRGNLQE--------ELMQIWE-EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 999988887 7777752 3478999999998753 5667788776
No 145
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=231.88 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=139.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..+ +.++.
T Consensus 9 ~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---~~~--~~~i~ 83 (510)
T PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK---LAA--QLGIG 83 (510)
T ss_pred eeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH---HHH--HCCeE
Confidence 4667778766678999999999999999999999999999999999999999999977665322111 011 11233
Q ss_pred eeEeccccccHHHHHHHHHHhh-----------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-----------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.+.....+...+.+.+... ....+.. +++.+|+.+..++++.+||+||+ .||++++
T Consensus 84 ~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 84 I-IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM-MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred E-EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHH-HHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 3 33332222211122222110 0112233 34678998888999999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
.+|+ +|+||| |+|||+..+..+++ +|.++. .+|.+||++||++... +.++.+|+.+
T Consensus 162 ~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 162 LDAK--VIIMDEPTSSLTNKEVDYLFL--------IMNQLR--KEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred cCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 9999 999999 99999999988887 888886 4588999999998764 5677788876
No 146
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.2e-26 Score=211.68 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=136.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... ..+.. .+.+
T Consensus 8 ~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~--~i~~ 81 (241)
T PRK14250 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV----IDLRR--KIGM 81 (241)
T ss_pred eEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh----HHhhh--cEEE
Confidence 44455655557899999999999999999999999999999999999999999998766532211 11112 2322
Q ss_pred eEeccccccHHHHHHHHHHhh------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 229 VVAEGEKAKASSVLSQAVKRG------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+.+.....+. .+.+.+... ....+.. +++.+|+. +..++.+.+||+||+ +||||++.+|+ +|+||
T Consensus 82 -~~q~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~--llllD 156 (241)
T PRK14250 82 -VFQQPHLFEG-TVKDNIEYGPMLKGEKNVDVEY-YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE--VLLLD 156 (241)
T ss_pred -EecCchhchh-hHHHHHhcchhhcCcHHHHHHH-HHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC--EEEEe
Confidence 4444333332 233333211 0112233 34677885 466788999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
| |+|+|+..+..++. ++.++.. ..|.+||++||+++.. +..+.+|+.++
T Consensus 157 EPt~~LD~~~~~~l~~--------~l~~~~~-~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 157 EPTSALDPTSTEIIEE--------LIVKLKN-KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred CCcccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9 99999999977777 7777752 3488999999999863 55677887763
No 147
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=3.7e-26 Score=215.87 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=135.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... .+....+ +
T Consensus 7 ~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~----~~~~~i~--~ 80 (258)
T PRK13548 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA----ELARRRA--V 80 (258)
T ss_pred eEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHH----HhhhheE--E
Confidence 445566655678999999999999999999999999999999999999999999977654322111 1111222 2
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh------CC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN------GA 289 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~------~~ 289 (372)
+.+.....+...+.+.+... ...... .+++.+|+.+..++.+.+||+||+ +||++++ .+
T Consensus 81 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 81 -LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVA-AALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred -EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHH-HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 33332221111222222111 011122 344678888777889999999999 9999999 58
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|+|+..+..+.. ++.++.. .+|.+||++||++... +.++..|+.+.
T Consensus 159 p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 159 PR--WLLLDEPTSALDLAHQHHVLR--------LARQLAH-ERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred CC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99 999999 99999999977777 7777742 3478999999998764 45778887763
No 148
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.5e-26 Score=216.06 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=135.0
Q ss_pred HHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+ ...+++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+... ...+....++
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~~~~i~~- 81 (274)
T PRK13644 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---LQGIRKLVGI- 81 (274)
T ss_pred EEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc---HHHHHhheEE-
Confidence 3445563 3457899999999999999999999999999999999999999999998765432211 1112222332
Q ss_pred eeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.+. ......+.+.+... ..+.+.. +++.+|+.+..+..+.+||+||+ .||+|++.+|+
T Consensus 82 --v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~-- 156 (274)
T PRK13644 82 --VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR-ALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE-- 156 (274)
T ss_pred --EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHH-HHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC--
Confidence 333321 11111222222111 0112233 34678988888889999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+++ ++.++. .+|.+||++||+++.. +..+..|+.+
T Consensus 157 lllLDEPt~gLD~~~~~~l~~--------~l~~l~--~~g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLE--------RIKKLH--EKGKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 999999 99999999988887 888775 4588999999998874 3455677665
No 149
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=214.75 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=132.7
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.++.+.........+....++ +.+.+ .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~---v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV---VFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEE---EecCcchh
Confidence 368999999999999999999999999999999999999999999987765321110111222233332 34432 1
Q ss_pred ccHHHHHHHHHHhhh----------hhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 236 AKASSVLSQAVKRGK----------EQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
... ..+.+.+.... ...+..+ ++.+|+. +..++.+.+||+||+ +||++|+.+|+ +|+||| |
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~--illLDEPt 172 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEK-LEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPE--VLVLDEPT 172 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCCHHHHHHHHHHH-HHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCC--EEEEECCc
Confidence 111 12233322110 1122333 3677885 466889999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+|||+..+..++. ++.++. ..|.|||++||+++.. +..+..|+.+.+
T Consensus 173 ~gLD~~~~~~l~~--------~l~~l~--~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 173 AGLDPKARIEMMQ--------LFESIH--QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred cCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999987777 888875 3588999999999864 566788887643
No 150
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=5.1e-26 Score=203.53 Aligned_cols=163 Identities=26% Similarity=0.333 Sum_probs=124.5
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|+....++++||++.+|++++|+||||+||||++++|+|+++|++|+|.+.+.+...... ..+....++
T Consensus 5 l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~----~~~~~~i~~--- 77 (180)
T cd03214 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP----KELARKIAY--- 77 (180)
T ss_pred EEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH----HHHHHHHhH---
Confidence 3445555456889999999999999999999999999999999999999999997765432111 111111111
Q ss_pred EeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 230 VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
+.+ +.+.+|+.+..++.+.+||+||+ +|||+++.+|+ +++||| |+|+|+
T Consensus 78 ~~q-------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~--llllDEP~~~LD~ 130 (180)
T cd03214 78 VPQ-------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPP--ILLLDEPTSHLDI 130 (180)
T ss_pred HHH-------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCC--EEEEeCCccCCCH
Confidence 111 33566776666778899999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
..+..+.. ++.++.. ..+.++|+++|+.... +.++.+|+.+
T Consensus 131 ~~~~~~~~--------~l~~~~~-~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 131 AHQIELLE--------LLRRLAR-ERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99977777 8888752 2278999999998764 4456666654
No 151
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.3e-26 Score=226.15 Aligned_cols=188 Identities=15% Similarity=0.159 Sum_probs=143.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... + +.++.
T Consensus 23 ~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~------~--~r~ig 94 (377)
T PRK11607 23 RNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP------Y--QRPIN 94 (377)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH------H--HCCEE
Confidence 567777776567889999999999999999999999999999999999999999998766532211 1 12333
Q ss_pred eeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++....++...+.+++.... .+.+. -+++.+|+.+..++++.+||+||+ +|||||+.+|+ +
T Consensus 95 ~-vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~-~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~--l 170 (377)
T PRK11607 95 M-MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVN-EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK--L 170 (377)
T ss_pred E-EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 3 556555555444444443211 11222 344788999889999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| +++||...+..+.. .+.++.. +.|.++|++|||.... +..+..|+.+.
T Consensus 171 LLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQL--------EVVDILE-RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred EEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999 99999999977776 5666542 4588999999999864 56778887763
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.6e-26 Score=211.19 Aligned_cols=189 Identities=21% Similarity=0.291 Sum_probs=132.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+....+ .+.. .+.
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~---~~~~--~i~ 83 (237)
T PRK11614 9 DKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK---IMRE--AVA 83 (237)
T ss_pred EeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHH---HHHh--CEE
Confidence 35566676656789999999999999999999999999999999999999999999876643321111 1111 122
Q ss_pred eeEeccccccHHHHHHHHHHhh--------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+ +.+.....+...+.+.+... ....+..+ .+.+ ++.+..+..+.+||+||+ .|||+++.+|+ +|
T Consensus 84 ~-~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~--il 159 (237)
T PRK11614 84 I-VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR--LL 159 (237)
T ss_pred E-eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHH-HHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC--EE
Confidence 2 33332222211122222110 01112222 2444 355556778999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..+.. ++.++. .+|.++|++||+++.. +..+.+|+.+
T Consensus 160 llDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFD--------TIEQLR--EQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred EEcCccccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 9999 99999999977777 777775 4588999999998743 5567788876
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7e-26 Score=215.95 Aligned_cols=188 Identities=19% Similarity=0.234 Sum_probs=135.8
Q ss_pred HHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 150 VLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 150 l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+.+.|+ ....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+... .. .....+....+ +
T Consensus 7 l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~-~~-~~~~~~~~~i~--~ 82 (275)
T PRK13639 7 LKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKY-DK-KSLLEVRKTVG--I 82 (275)
T ss_pred EEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcc-cc-chHHHHHhheE--E
Confidence 344554 2346899999999999999999999999999999999999999999998765421 00 01112222222 2
Q ss_pred eEecccc--ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 229 VVAEGEK--AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.+. ..+ ..+.+.+... ....+. .+++.+|+.+..++.+.+||+||+ .|||+++.+|+
T Consensus 83 -v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~-~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~-- 157 (275)
T PRK13639 83 -VFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVK-EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE-- 157 (275)
T ss_pred -EeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC--
Confidence 333321 111 1222222111 001122 345788998888899999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..++. ++.++. .+|.+||++||++... +.++.+|+.+.
T Consensus 158 llllDEPt~gLD~~~~~~l~~--------~l~~l~--~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMK--------LLYDLN--KEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 888875 3488999999999864 55677887764
No 154
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=8e-26 Score=206.68 Aligned_cols=174 Identities=19% Similarity=0.175 Sum_probs=125.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+.. .. . +....+ +
T Consensus 7 ~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~-----~-~~~~~~--~ 77 (207)
T PRK13539 7 DLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DP-----D-VAEACH--Y 77 (207)
T ss_pred eEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc-ch-----h-hHhhcE--E
Confidence 4455566555789999999999999999999999999999999999999999999776532 11 0 112222 1
Q ss_pred eEeccccccHHHHHHHHHHh------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 229 VVAEGEKAKASSVLSQAVKR------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
+.+.....+...+.+.+.. .....+.. +++.+|+.+..+..+.+||+||+ .|||+++.+|+ +|+|||
T Consensus 78 -~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~--llllDE 153 (207)
T PRK13539 78 -LGHRNAMKPALTVAENLEFWAAFLGGEELDIAA-ALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP--IWILDE 153 (207)
T ss_pred -ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHH-HHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 2222111111111111110 01112333 34678887777888999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+|+|+..+..+.. ++.++. .+|.++|++||+....
T Consensus 154 Pt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 154 PTAALDAAAVALFAE--------LIRAHL--AQGGIVIAATHIPLGL 190 (207)
T ss_pred CcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCchhh
Confidence 99999999988877 777775 3588999999998753
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.7e-26 Score=216.06 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=128.5
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+............+...++ + +.+.+ .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~--~-~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG--L-VFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheE--E-EeeChhhh
Confidence 46899999999999999999999999999999999999999999997765422110001112222222 2 33332 1
Q ss_pred ccHHHHHHHHHHhh-------h---hhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 236 AKASSVLSQAVKRG-------K---EQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 236 ~~~~~~~~~~~~~~-------~---~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
..+. .+.+.+... . ...++. +++.+|+. ...++.+.+||+||+ .||+|++.+|+ +|+||| |
T Consensus 98 ~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~--lllLDEPt 173 (280)
T PRK13649 98 LFEE-TVLKDVAFGPQNFGVSQEEAEALARE-KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPK--ILVLDEPT 173 (280)
T ss_pred hccc-cHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC--EEEEeCCc
Confidence 1111 122222110 0 011222 34677886 356888999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+|+..+..+.. +|.++. ..+.+||++||++... +.++..|+.+
T Consensus 174 ~~LD~~~~~~l~~--------~l~~~~--~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 174 AGLDPKGRKELMT--------LFKKLH--QSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred ccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 9999999987777 788775 3478999999998754 4567788765
No 156
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.2e-25 Score=211.36 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=132.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc-----ccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD-----TFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d-----~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ ..+....+..+.+..
T Consensus 8 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~- 86 (253)
T TIGR02323 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT- 86 (253)
T ss_pred eeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhc-
Confidence 45556665556899999999999999999999999999999999999999999997655 222111110111111
Q ss_pred hCcceeEecccc--ccHHHHHHHHHH-----h------hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHH
Q 017380 224 TGCEIVVAEGEK--AKASSVLSQAVK-----R------GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 224 ~~v~~~~~~~~~--~~~~~~~~~~~~-----~------~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral 286 (372)
++.+ +.+.+. ..+.....+.+. . .....+..+ ++.+|+. ...++.+.+||+||+ +||||+
T Consensus 87 -~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~LSgG~~qrv~laral 163 (253)
T TIGR02323 87 -EWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDW-LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL 163 (253)
T ss_pred -ceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHH-HHHcCCChhhhhcCchhcCHHHHHHHHHHHHH
Confidence 2222 333321 111001111110 0 011223333 4677886 367888999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+.+|+ +|+||| |+|+|+..+..+.. ++.++.. ..|.++|++||+.+.. +..+.+|+.+
T Consensus 164 ~~~p~--vlllDEP~~~LD~~~~~~l~~--------~l~~~~~-~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 164 VTRPR--LVFMDEPTGGLDVSVQARLLD--------LLRGLVR-DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred hcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999 999999 99999999988777 7777642 3488999999998754 4566788776
No 157
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=1.1e-25 Score=232.21 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=142.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... .+ .+.++.
T Consensus 15 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~----~~-~~~~i~ 89 (510)
T PRK15439 15 RSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA----KA-HQLGIY 89 (510)
T ss_pred EeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHH----HH-HhCCEE
Confidence 4677778766678999999999999999999999999999999999999999999977664322111 11 112333
Q ss_pred eeEeccccccHHHHHHHHHHhh------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+ +.+.....+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ +|||+|+.+|+ +|+||
T Consensus 90 ~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~--lllLD 165 (510)
T PRK15439 90 L-VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ-LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR--ILILD 165 (510)
T ss_pred E-EeccCccCCCCcHHHHhhcccccchHHHHHHHH-HHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC--EEEEE
Confidence 3 44443333322333333211 1122333 34788998888899999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
| |+|+|+..+..++. +|.++. .+|.+||++||+++.. +.++.+|+.+.
T Consensus 166 EPt~~LD~~~~~~l~~--------~l~~~~--~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 166 EPTASLTPAETERLFS--------RIRELL--AQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CCCCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 99999999988887 888885 4588999999998764 56788888763
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.9e-25 Score=230.14 Aligned_cols=202 Identities=15% Similarity=0.161 Sum_probs=144.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+...... ...+.. +
T Consensus 9 ~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~~~~~~--~ 83 (506)
T PRK13549 9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI---RDTERA--G 83 (506)
T ss_pred eeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH---HHHHHC--C
Confidence 4667778766678999999999999999999999999999999999986 79999997766532111 011112 2
Q ss_pred cceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.+ +.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +||||++.+
T Consensus 84 i~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 84 IAI-IHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK-LLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred eEE-EEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHH-HHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 322 34433222222222222110 0112333 34678998778899999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCCC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQP 360 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~~ 360 (372)
|+ +|+||| |++||+..+..+++ +|.++. .+|.+||++||++... +.++.+|+.+. ..+.
T Consensus 162 p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 162 AR--LLILDEPTASLTESETAVLLD--------IIRDLK--AHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred CC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99 999999 99999999988887 888885 4588999999998764 56778898763 2333
Q ss_pred CCHHHHHH
Q 017380 361 FDAEAFVN 368 (372)
Q Consensus 361 ~~~~~~v~ 368 (372)
+...++++
T Consensus 230 ~~~~~~~~ 237 (506)
T PRK13549 230 MTEDDIIT 237 (506)
T ss_pred CCHHHHHH
Confidence 44444443
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=9.5e-26 Score=208.76 Aligned_cols=178 Identities=16% Similarity=0.123 Sum_probs=129.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... .+....+
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~----~~~~~i~-- 84 (225)
T PRK10247 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE----IYRQQVS-- 84 (225)
T ss_pred eccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHH----HHHhccE--
Confidence 4666777766678999999999999999999999999999999999999999999977665332211 1222222
Q ss_pred eeEeccccccHHHHHHHHHHh-----h---hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 228 IVVAEGEKAKASSVLSQAVKR-----G---KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+ +.+.....+. .+.+.+.. . ....... +++.+|+. ...++.+.+||+|++ .|||+++.+|+ ++
T Consensus 85 ~-~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~--ll 159 (225)
T PRK10247 85 Y-CAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLD-DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK--VL 159 (225)
T ss_pred E-Eecccccccc-cHHHHHHhHHhhcCCChHHHHHHH-HHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC--EE
Confidence 2 3333322222 22222211 0 0112223 44777885 456788999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+||| |+|+|+..+..+.. ++.++.. ..|.++|++||+....
T Consensus 160 llDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 160 LLDEITSALDESNKHNVNE--------IIHRYVR-EQNIAVLWVTHDKDEI 201 (225)
T ss_pred EEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEECChHHH
Confidence 9999 99999999977777 7777652 3478999999998763
No 160
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=8.9e-26 Score=214.03 Aligned_cols=182 Identities=20% Similarity=0.244 Sum_probs=130.3
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc--
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-- 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-- 235 (372)
..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+... .+...+.+.++ + +.+.+.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~~~~~i~--~-v~q~~~~~ 100 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR-KQRRAFRRDVQ--L-VFQDSPSA 100 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH-HHHHHHhhceE--E-EecChhhh
Confidence 46889999999999999999999999999999999999999999998766543221 11122222222 2 333321
Q ss_pred ccHHHHHHHHHH----h-------hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 236 AKASSVLSQAVK----R-------GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 236 ~~~~~~~~~~~~----~-------~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
..+...+.+.+. . .....+..+ ++.+|+. +..+..+.+||+||+ +||||++.+|+ +|+|||
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~--illLDEP 177 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLDESEQKARIAEL-LDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPK--LIVLDEA 177 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 111111111110 0 011123333 4677885 567889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|++||+..+..+.. ++.++.. ..|.+||++||++... +.++..|+.+
T Consensus 178 t~~LD~~~~~~l~~--------~l~~~~~-~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 178 VSNLDMVLQAVILE--------LLRKLQQ-AFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred cccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999977777 7777753 3478999999998765 4567788765
No 161
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=5.5e-26 Score=214.26 Aligned_cols=189 Identities=21% Similarity=0.240 Sum_probs=136.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+...... . .+....+ +
T Consensus 6 ~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~---~~~~~i~--~ 79 (256)
T TIGR03873 6 RVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-R---ARARRVA--L 79 (256)
T ss_pred eEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-H---HHhhheE--E
Confidence 44556665567899999999999999999999999999999999999999999997766433211 1 1111122 2
Q ss_pred eEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.....+...+.+.+... ..+.+.. +++.+|+.+..+..+.+||+||+ +||++++.+|+
T Consensus 80 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 80 -VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR-ALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred -ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHH-HHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 23322111111111111100 0112233 34677887777889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+++||| |+|+|+..+..+.. ++.++. .+|.+||++||++... +.++.+|+.+.+
T Consensus 158 --llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 158 --LLLLDEPTNHLDVRAQLETLA--------LVRELA--ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred --EEEEcCccccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999 99999999988777 888886 3578999999998875 567788887743
No 162
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.3e-25 Score=218.40 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=141.2
Q ss_pred HHHHHHHhcc-----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch----------
Q 017380 147 KNSVLDLLTK-----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA---------- 211 (372)
Q Consensus 147 ~~~l~~~~~~-----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~---------- 211 (372)
.+++...|+. ..+++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+..+.
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 103 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccc
Confidence 4677778863 2478999999999999999999999999999999999999999999987664321
Q ss_pred --hhhhHHHHHHHhhCcceeEeccc--cccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC-ccchhhHhHHH
Q 017380 212 --AASDQLEIWAERTGCEIVVAEGE--KAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL-HTNYSLMEELV 276 (372)
Q Consensus 212 --~a~eql~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~-~~~~~~~~eLS 276 (372)
........+...+++ +.+.+ ...+. .+.+.+... ....+.. +++.+|+. +..++.+.+||
T Consensus 104 ~~~~~~~~~~~~~~ig~---v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 104 YSKKIKNFKELRRRVSM---VFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKF-YLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccchHHHHHhcEEE---EEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHH-HHHHcCCChhHhcCCcccCC
Confidence 000112223333333 44433 12222 223322111 0112233 34677886 56788899999
Q ss_pred HHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------e
Q 017380 277 ACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------V 346 (372)
Q Consensus 277 ~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i 346 (372)
+||+ +|||||+.+|+ +|+||| |+|||+..+..++. +|.++. .+|.|||++||+++.. +
T Consensus 179 gGqkqRvaiAraL~~~p~--iLLLDEPtsgLD~~~~~~l~~--------~L~~l~--~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPE--ILIFDEPTAGLDPKGEHEMMQ--------LILDAK--ANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred HHHHHHHHHHHHHHcCCC--EEEEECCccCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEE
Confidence 9999 99999999999 999999 99999999988887 888775 4588999999999853 5
Q ss_pred eeeccCcccCC
Q 017380 347 KFVGVGEGVED 357 (372)
Q Consensus 347 ~~i~~Ge~v~D 357 (372)
.++..|+.+.+
T Consensus 247 ~vl~~G~i~~~ 257 (320)
T PRK13631 247 IVMDKGKILKT 257 (320)
T ss_pred EEEECCEEEEe
Confidence 67888887743
No 163
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.1e-26 Score=202.08 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=143.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-----CCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-----GAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-----~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
++|...|+...+++++|+++++++|++|+||+||||||+|+++..+.... .|+|.+.|.|.+.... ..-.+..
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~--d~~~lRr 88 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV--DVVELRR 88 (253)
T ss_pred cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC--CHHHHHH
Confidence 47788899999999999999999999999999999999999999987653 4899999999876521 1223445
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh------hhchHHHHH---HhhCC----CccchhhHhHHHHHHH---HHHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK------EQGFDIVLC---DTSGR----LHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~d~vl~---dt~G~----~~~~~~~~~eLS~G~r---~iAral 286 (372)
+.|+ +++.++.+|. .+|+++.... ....+.+.. ..+++ .+..++....|||||+ +||||+
T Consensus 89 ~vGM---VFQkPnPFp~-SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 89 RVGM---VFQKPNPFPM-SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred Hhee---eccCCCCCCc-hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 5665 6777777774 3555554331 112222221 12222 1233455667999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+.|||.+..++-+ ++..+. +.-||++|||+|.-+ ..|+-.|+.||
T Consensus 165 Av~Pe--VlLmDEPtSALDPIsT~kIEe--------Li~eLk---~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 165 AVKPE--VLLMDEPTSALDPISTLKIEE--------LITELK---KKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred hcCCc--EEEecCcccccCchhHHHHHH--------HHHHHH---hccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 99999 999999 99999999988776 888885 468999999999876 45777888873
No 164
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=8.9e-26 Score=211.69 Aligned_cols=188 Identities=17% Similarity=0.210 Sum_probs=134.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-----CCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-----GAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-----~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++++|++++|+|+||||||||++.|+|+++|+ +|+|.+.+.+..+... ....+...
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~ 83 (247)
T TIGR00972 6 NLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--DVVELRRR 83 (247)
T ss_pred EEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--chHHHHhh
Confidence 3445566555789999999999999999999999999999999999988 9999997766432100 01112222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh----------h-hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG----------K-EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
+.+ +.+.....+ ..+.+.+... . ..... .+++.+|+. +..++.+.+||+||+ .|||+
T Consensus 84 --i~~-v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 84 --VGM-VFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVE-ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred --eEE-EecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHH-HHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 222 333333222 2222222110 0 01122 234677887 666788999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+++ ++.++. . +.++|++||+++.. +.++.+|+.+.
T Consensus 159 l~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 159 LAVEPE--VLLLDEPTSALDPIATGKIEE--------LIQELK--K-KYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred HhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHH--h-cCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999 99999999988877 888875 2 47999999999853 55778888764
No 165
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=5.4e-26 Score=224.15 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=135.6
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
|.+.|++.. + ++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+............+.. .+.+
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~--~i~~- 79 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR--RIGY- 79 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC--CeEE-
Confidence 445565433 3 8999999999999999999999999999999999999999998766532110000111112 2323
Q ss_pred EeccccccHHHHHHHHHHhh-------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 230 VAEGEKAKASSVLSQAVKRG-------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+.+.....+...+.+.+... . ...++.+ ++.+|+.+..++++.+||+||+ +||||++.+|+ +|+||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~--lllLD 156 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERV-IELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR--LLLMD 156 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHH-HHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEc
Confidence 44444333322233333211 0 1123333 4688998888999999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
| |+|+|+..+..+.. +|.++.. ..|.++|++||+++.. +.++.+|+.+
T Consensus 157 EPts~LD~~~~~~l~~--------~L~~l~~-~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 157 EPLAALDDPRKYEILP--------YLERLHA-EFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred CCCcCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9 99999999988887 7777752 3478999999998753 5677888766
No 166
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-26 Score=224.08 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=136.4
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
|.+.|++.. .++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+............+.. .+.+
T Consensus 6 l~k~~~~~~--~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~--~i~~- 80 (352)
T PRK11144 6 FKQQLGDLC--LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR--RIGY- 80 (352)
T ss_pred EEEEeCCEE--EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC--CEEE-
Confidence 445565432 37999999999999999999999999999999999999999997766432110000111112 2323
Q ss_pred EeccccccHHHHHHHHHHhh----hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CC
Q 017380 230 VAEGEKAKASSVLSQAVKRG----KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TT 301 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-ts 301 (372)
+.+.....+...+.+.+... ....++.+ ++.+|+.+..++++.+||+||+ +||||++.+|+ +|+||| |+
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~--llLLDEPts 157 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMAKSMVAQFDKI-VALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE--LLLMDEPLA 157 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhhhhhHHHHHHH-HHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC--EEEEcCCcc
Confidence 44444444333333333221 11223344 4688998888999999999999 99999999999 999999 99
Q ss_pred CCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 302 GLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 302 glD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++|+..+..++. +|.++.. ..|.++|++||++... +..+.+|+.+
T Consensus 158 ~LD~~~~~~l~~--------~L~~l~~-~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~ 208 (352)
T PRK11144 158 SLDLPRKRELLP--------YLERLAR-EINIPILYVSHSLDEILRLADRVVVLEQGKVK 208 (352)
T ss_pred cCCHHHHHHHHH--------HHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 999999988887 7777752 3478999999998743 5677788766
No 167
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.92 E-value=7.9e-26 Score=220.86 Aligned_cols=195 Identities=16% Similarity=0.191 Sum_probs=139.1
Q ss_pred HHHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhhhhHHHHH
Q 017380 148 NSVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 148 ~~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
++|.+.|+. ..+++++||++.+|++++|+|+||||||||++.|+|+++|. +|+|.+.+.+..+... .+++.+
T Consensus 16 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~-~~~~~~ 94 (330)
T PRK09473 16 KDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE-KELNKL 94 (330)
T ss_pred eCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH-HHHHHH
Confidence 455666632 34689999999999999999999999999999999999985 9999998887755432 222222
Q ss_pred HHhhCcceeEeccc--cccHH----HHHHHHHHhh----h---hhchHHHHHHhhCCCc---cchhhHhHHHHHHH---H
Q 017380 221 AERTGCEIVVAEGE--KAKAS----SVLSQAVKRG----K---EQGFDIVLCDTSGRLH---TNYSLMEELVACKK---A 281 (372)
Q Consensus 221 ~~~~~v~~~~~~~~--~~~~~----~~~~~~~~~~----~---~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r---~ 281 (372)
. ...+.+ +++.+ ...+. ..+.+.+... . ...+.. +++.+|+.+ ..++++.+||+||+ +
T Consensus 95 r-~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~-~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 95 R-AEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVR-MLDAVKMPEARKRMKMYPHEFSGGMRQRVM 171 (330)
T ss_pred h-cCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence 1 112333 44543 12221 1111111110 0 112223 346778754 23578999999999 9
Q ss_pred HHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 282 VGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 282 iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
||||++.+|+ +||+|| |++||+..+..++. +|.++.+ ..|.++|+||||++.. +..+..|+.
T Consensus 172 IArAL~~~P~--llilDEPts~LD~~~~~~i~~--------lL~~l~~-~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 172 IAMALLCRPK--LLIADEPTTALDVTVQAQIMT--------LLNELKR-EFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred HHHHHHcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999 999999 99999999988888 8888863 4588999999999875 556778888
Q ss_pred cCC
Q 017380 355 VED 357 (372)
Q Consensus 355 v~D 357 (372)
+++
T Consensus 241 ve~ 243 (330)
T PRK09473 241 MEY 243 (330)
T ss_pred EEE
Confidence 754
No 168
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.8e-26 Score=216.98 Aligned_cols=188 Identities=19% Similarity=0.167 Sum_probs=137.1
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++...|+. ..+++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+...... . .+...++
T Consensus 10 ~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~-~---~~~~~i~- 84 (279)
T PRK13635 10 HISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV-W---DVRRQVG- 84 (279)
T ss_pred EEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-H---HHhhheE-
Confidence 45556653 347899999999999999999999999999999999999999999998876533211 1 1122232
Q ss_pred ceeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 227 EIVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ +.+.+. ..+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+
T Consensus 85 -~-~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~- 160 (279)
T PRK13635 85 -M-VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ-ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD- 160 (279)
T ss_pred -E-EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHH-HHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-
Confidence 2 333321 11111223332211 0112333 34678998888999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..++. +|.++.. ..|.+||++||++... +..+.+|+.+
T Consensus 161 -lllLDEPt~gLD~~~~~~l~~--------~l~~l~~-~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 161 -IIILDEATSMLDPRGRREVLE--------TVRQLKE-QKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred -EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999 99999999988887 8888763 3488999999998864 4556677665
No 169
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-26 Score=216.80 Aligned_cols=189 Identities=19% Similarity=0.215 Sum_probs=136.0
Q ss_pred HHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.|+ ...+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+..+... ..+....++
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~i~~- 82 (277)
T PRK13652 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI----REVRKFVGL- 82 (277)
T ss_pred EEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHHHhheEE-
Confidence 4555664 3347899999999999999999999999999999999999999999998776532211 112222222
Q ss_pred eeEecccc-ccHHHHHHHHHHhh------h----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEK-AKASSVLSQAVKRG------K----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~------~----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.+. ......+.+.+... . .+.++. +++.+|+.+..++.+.+||+||+ .||||++.+|+
T Consensus 83 --v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~-- 157 (277)
T PRK13652 83 --VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSS-ALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ-- 157 (277)
T ss_pred --EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHH-HHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC--
Confidence 333221 01011122222110 0 112233 44678888878899999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+++ ++.++.. ..|.+||++||+++.. +..+..|+.+.
T Consensus 158 llilDEPt~gLD~~~~~~l~~--------~l~~l~~-~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELID--------FLNDLPE-TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 999999 99999999987777 8887753 3488999999998764 55677887763
No 170
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=1.3e-25 Score=207.43 Aligned_cols=184 Identities=18% Similarity=0.199 Sum_probs=134.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+....++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+.... .. . .+.+
T Consensus 5 ~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~~----~--~~~~ 74 (223)
T TIGR03740 5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----DL----H--KIGS 74 (223)
T ss_pred eEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----cc----c--cEEE
Confidence 344556555578999999999999999999999999999999999999999999977553211 00 1 1212
Q ss_pred eEeccccccHHHHHHHHHHh-----h-hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 229 VVAEGEKAKASSVLSQAVKR-----G-KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
+.+.....+...+.+.+.. . ....+.. +.+.+|+.+..+..+.+||+||+ .+||+++.+|+ +|+|||
T Consensus 75 -~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~--llllDE 150 (223)
T TIGR03740 75 -LIESPPLYENLTARENLKVHTTLLGLPDSRIDE-VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK--LLILDE 150 (223)
T ss_pred -EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHH-HHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCC--EEEECC
Confidence 2222222211112222211 0 1122333 34788998888889999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+|+|+..+..+.. ++.++. .+|.++|++||+.+.. +..+.+|+.+.
T Consensus 151 P~~~LD~~~~~~l~~--------~L~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 151 PTNGLDPIGIQELRE--------LIRSFP--EQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred CccCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999977777 888775 3578999999998764 45677888764
No 171
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.1e-25 Score=211.65 Aligned_cols=185 Identities=21% Similarity=0.287 Sum_probs=143.0
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-h----cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-N----EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~----~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
.+++|+||++++||+++|||.+|||||||...|.|+++ + .+|+|.+.+.|.++....+..+.++..+++ ++|
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m---IfQ 95 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM---IFQ 95 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE---EEc
Confidence 46899999999999999999999999999999999997 3 578999999988776554333445555544 455
Q ss_pred cc--cccHHHHHH----HHHHhh-----h--hhchHHHHHHhhCCCc---cchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 233 GE--KAKASSVLS----QAVKRG-----K--EQGFDIVLCDTSGRLH---TNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 233 ~~--~~~~~~~~~----~~~~~~-----~--~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
++ ..+|...+. +.+... + ..+...-+++.+|+.+ ..+.++.||||||+ .||.|++.+|+
T Consensus 96 ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~-- 173 (316)
T COG0444 96 DPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK-- 173 (316)
T ss_pred CchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC--
Confidence 43 233433322 222211 0 1112223457889875 45889999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||.|| |++||...|+++++ +|.++.+ +.|.++|+||||+++. |..+-.|+.||
T Consensus 174 LlIADEPTTALDvt~QaqIl~--------Ll~~l~~-e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILD--------LLKELQR-EKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 999999 99999999999998 9999986 6799999999999986 55666898885
No 172
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-25 Score=214.44 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=139.0
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|+ ...+++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..... .....+....++
T Consensus 9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~--~~~~~~~~~ig~ 86 (283)
T PRK13636 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR--KGLMKLRESVGM 86 (283)
T ss_pred EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc--chHHHHHhhEEE
Confidence 45566674 355789999999999999999999999999999999999999999999887652110 011122223332
Q ss_pred ceeEecccc-ccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 227 EIVVAEGEK-AKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+.+.+. ......+.+.+... . .+.++. +++.+|+.+..++.+.+||+||+ .|||||+.+|+
T Consensus 87 ---v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~- 161 (283)
T PRK13636 87 ---VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN-ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK- 161 (283)
T ss_pred ---EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHH-HHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC-
Confidence 333321 11111223322110 0 112233 34678998888999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..++. ++.++.. ..|.+||++||+++.. +.++.+|+.+.
T Consensus 162 -lLilDEPt~gLD~~~~~~l~~--------~l~~l~~-~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 162 -VLVLDEPTAGLDPMGVSEIMK--------LLVEMQK-ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred -EEEEeCCccCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988877 8888752 3488999999999864 55677887764
No 173
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-25 Score=228.84 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=137.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+ .+.. .+.+
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~---~~~~--~i~~ 77 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE---ALEN--GISM 77 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHH---HHhC--CEEE
Confidence 4556676656789999999999999999999999999999999999999999999876643211111 1111 2222
Q ss_pred eEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+.+.....+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+
T Consensus 78 -v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~- 154 (491)
T PRK10982 78 -VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA-IFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK- 154 (491)
T ss_pred -EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHH-HHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC-
Confidence 33332222111222222110 0112233 34677888777889999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+++ ++.++. ..|.++|++||++... +.++.+|+.+.
T Consensus 155 -lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 155 -IVIMDEPTSSLTEKEVNHLFT--------IIRKLK--ERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred -EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 999999 99999999988887 888875 4588999999998764 56778898773
No 174
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=8.1e-26 Score=207.67 Aligned_cols=179 Identities=18% Similarity=0.105 Sum_probs=130.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+.... + ... .+.
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~----~~~--~i~ 85 (214)
T PRK13543 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---D----RSR--FMA 85 (214)
T ss_pred eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---h----hhh--ceE
Confidence 5677777766678999999999999999999999999999999999999999999977654211 0 111 122
Q ss_pred eeEeccccccHHHHHHHHHHhh------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
+ +.+.+...+...+.+.+... . .+.... +++.+|+.+..+..+.+||+||+ ++||+++.+|+ +|+|
T Consensus 86 ~-~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--llll 161 (214)
T PRK13543 86 Y-LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGS-ALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP--LWLL 161 (214)
T ss_pred E-eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHH-HHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC--EEEE
Confidence 2 33332222211122222110 0 111222 34677887777889999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeee
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFV 349 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i 349 (372)
|| |+++|+..+..+.. ++.++. .+++++|++||+.+....+.
T Consensus 162 DEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 162 DEPYANLDLEGITLVNR--------MISAHL--RGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred eCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecChhhhhhhc
Confidence 99 99999999977776 787775 45789999999998765443
No 175
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=1.6e-25 Score=205.49 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=132.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+. ...++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+..+... +... +.+
T Consensus 5 ~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~------~~~~--i~~ 74 (213)
T TIGR01277 5 KVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP------YQRP--VSM 74 (213)
T ss_pred eeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh------hccc--eEE
Confidence 44455542 3468999999999999999999999999999999999999999998776533111 1111 222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.+...+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ ++
T Consensus 75 -v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~--ll 150 (213)
T TIGR01277 75 -LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVD-AAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP--IL 150 (213)
T ss_pred -EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHH-HHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33433332221222222110 1112233 34678888778899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|+|+..+..++. ++.++.. ..+.++|++||+.+.. +..+..|+.+
T Consensus 151 llDEPt~~LD~~~~~~~~~--------~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 151 LLDEPFSALDPLLREEMLA--------LVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred EEcCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 9999 99999999988887 7887752 3478999999998763 4456677665
No 176
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=211.82 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=135.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhh-hhHHHHHHHhh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAA-SDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a-~eql~~~~~~~ 224 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+..+... ......+....
T Consensus 9 nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i 88 (262)
T PRK09984 9 KLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88 (262)
T ss_pred eEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhhe
Confidence 4555666556789999999999999999999999999999999999875 4999998766532110 00111121222
Q ss_pred CcceeEeccccccHHHHHHHHHHhh------------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG------------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iA 283 (372)
+ + +.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +||
T Consensus 89 ~--~-~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 89 G--Y-IFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ-ALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred E--E-EccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHH-HHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 2 2 33333322221222222110 0112233 34677887777889999999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
||++.+|+ +|+||| |+|+|+..+..+.. +|.++.. .+|.+||++||++... +..+.+|+.+.
T Consensus 165 ral~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 165 RALMQQAK--VILADEPIASLDPESARIVMD--------TLRDINQ-NDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred HHHhcCCC--EEEecCccccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999 99999999987777 7887753 3478999999999853 55677787653
No 177
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=212.70 Aligned_cols=190 Identities=18% Similarity=0.171 Sum_probs=136.3
Q ss_pred HHHHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++.+.|++. ..++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+... ..+....+
T Consensus 11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~i~ 86 (269)
T PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF----EKLRKHIG 86 (269)
T ss_pred EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHHHhhee
Confidence 3556667542 36899999999999999999999999999999999999999999998766532111 11222222
Q ss_pred cceeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 226 CEIVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 226 v~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ +.+.+. ..+...+.+.+... ....+.. +++.+|+.+..+..+.+||+||+ +||||++.+|+
T Consensus 87 --~-v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 87 --I-VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE-ALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred --E-EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHH-HHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2 333321 11111111111100 0112223 34788988888889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..++. ++.++.. ..|.++|++||+.... +.++..|+.+.
T Consensus 163 --lllLDEPt~~LD~~~~~~l~~--------~L~~~~~-~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~ 222 (269)
T PRK13648 163 --VIILDEATSMLDPDARQNLLD--------LVRKVKS-EHNITIISITHDLSEAMEADHVIVMNKGTVYK 222 (269)
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCchHHhcCCEEEEEECCEEEE
Confidence 999999 99999999988887 7877752 3478999999998764 56677887763
No 178
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=3.6e-25 Score=210.16 Aligned_cols=180 Identities=19% Similarity=0.253 Sum_probs=128.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc--
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-- 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-- 235 (372)
..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ...+... +.+ +.+.+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~--i~~-v~q~~~~~ 99 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD----YSYRSQR--IRM-IFQDPSTS 99 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc----hhhHhcc--EEE-EecCchhh
Confidence 4689999999999999999999999999999999999999999999776653211 1111112 222 333321
Q ss_pred ccHHHHHHHHHH----h-------hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 236 AKASSVLSQAVK----R-------GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 236 ~~~~~~~~~~~~----~-------~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
..+...+.+.+. . .....+.. +++.+|+. ...+..+.+||+||+ +||++++.+|+ +|+|||
T Consensus 100 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~--lllLDEP 176 (267)
T PRK15112 100 LNPRQRISQILDFPLRLNTDLEPEQREKQIIE-TLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPK--VIIADEA 176 (267)
T ss_pred cCcchhHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCC--EEEEcCC
Confidence 111111111111 0 00112233 34688884 556778899999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+|+|+..+..+++ +|.++.. ..|.+||++||++... +.++.+|+.+.
T Consensus 177 t~~LD~~~~~~l~~--------~l~~~~~-~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 177 LASLDMSMRSQLIN--------LMLELQE-KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred cccCCHHHHHHHHH--------HHHHHHH-HcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999977777 7777752 3478999999999764 45677887663
No 179
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=2.7e-25 Score=204.96 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=123.9
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+...... .....+....+ + +.+.....
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~~~i~--~-~~q~~~~~ 94 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASE-KELVQLRRNIG--Y-IFQAHNLL 94 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCH-hHHHHHHhheE--E-EcCChhhc
Confidence 46889999999999999999999999999999999999999999997765432111 11111222222 2 33332222
Q ss_pred HHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCC
Q 017380 238 ASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTG 302 (372)
Q Consensus 238 ~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsg 302 (372)
+...+.+.+... ....+.. +++.+|+.+..+..+.+||+||+ .|||+++.+|+ +|+||| |+|
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~--illlDEP~~~ 171 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLSYQEARERARA-MLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK--LVLADEPTAA 171 (220)
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCc
Confidence 111111111100 0112333 44788988888899999999999 99999999999 999999 999
Q ss_pred CCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 303 LNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 303 lD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+..+..+.. ++.++.. .++.++|++||+++.+
T Consensus 172 LD~~~~~~l~~--------~l~~~~~-~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 172 LDSKSGRDVVE--------LMQKLAR-EQGCTILIVTHDNRIL 205 (220)
T ss_pred CCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHH
Confidence 99999988887 7777752 3589999999999854
No 180
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-25 Score=212.30 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=136.3
Q ss_pred HHHHHhcc------CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 149 SVLDLLTK------KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 149 ~l~~~~~~------~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
++.+.|+. ..+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+...... ...+..
T Consensus 9 ~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~---~~~~~~ 85 (280)
T PRK13633 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN---LWDIRN 85 (280)
T ss_pred eeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---HHHHhh
Confidence 45566642 347899999999999999999999999999999999999999999998766532111 111222
Q ss_pred hhCcceeEeccccc-cHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 223 RTGCEIVVAEGEKA-KASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 223 ~~~v~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
..++ +.+.+.. .....+.+.+... ..+.++. +++.+|+.+..++.+.+||+||+ .||++++.
T Consensus 86 ~i~~---v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 86 KAGM---VFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDE-SLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred heEE---EecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHH-HHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2332 3333210 0001112221110 0112233 34678998888899999999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|||+..+..+.. ++.++.. +.|.+||++||++... +.++..|+.+.
T Consensus 162 ~p~--llllDEPt~gLD~~~~~~l~~--------~l~~l~~-~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 162 RPE--CIIFDEPTAMLDPSGRREVVN--------TIKELNK-KYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred CCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 999 999999 99999999988887 8888852 3488999999998874 55667777653
No 181
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=3.1e-25 Score=204.23 Aligned_cols=185 Identities=18% Similarity=0.181 Sum_probs=127.3
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+. ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+.. .+
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~--~i 80 (220)
T cd03245 7 NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADLRR--NI 80 (220)
T ss_pred EEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH----HHHHh--hE
Confidence 34445543 346899999999999999999999999999999999999999999997655321111 11112 22
Q ss_pred ceeEeccccccHHHHHHHHHHhh----hhhchHHHHHHhhCCCccchhh-----------HhHHHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG----KEQGFDIVLCDTSGRLHTNYSL-----------MEELVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~dt~G~~~~~~~~-----------~~eLS~G~r---~iAral~~ 288 (372)
.+ +.+.....+. .+.+.+... ....+.. +++.+|+.+..+.. +.+||+||+ .|||+++.
T Consensus 81 ~~-~~q~~~~~~~-tv~e~l~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 81 GY-VPQDVTLFYG-TLRDNITLGAPLADDERILR-AAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred EE-eCCCCccccc-hHHHHhhcCCCCCCHHHHHH-HHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 22 4444333332 333333211 0111222 23455665544443 469999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+ +|+||| |+|||+..+..+++ ++.++. . +.+||++||++... +..+.+|+.+
T Consensus 158 ~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 158 DPP--ILLLDEPTSAMDMNSEERLKE--------RLRQLL--G-DKTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred CCC--EEEEeCccccCCHHHHHHHHH--------HHHHhc--C-CCEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 999 999999 99999999988887 888775 2 37999999999764 3344555543
No 182
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=207.13 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=132.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+.. ..++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.+...... . ...+.+
T Consensus 6 ~l~~~~~~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~-----~~~i~~ 75 (232)
T PRK10771 6 DITWLYHHL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---S-----RRPVSM 75 (232)
T ss_pred EEEEEECCc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---h-----hccEEE
Confidence 344455432 237999999999999999999999999999999999999999997765432111 0 112222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ .|||+++.+|+ +|
T Consensus 76 -~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--ll 151 (232)
T PRK10771 76 -LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHA-IARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP--IL 151 (232)
T ss_pred -EecccccccCCcHHHHHhcccccccCCCHHHHHHHHH-HHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33333322221222322210 0112233 34678888778899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |+|+|+..+..++. ++.++.. ..|.++|++||+.+.. +..+..|+.+.
T Consensus 152 lLDEP~~gLD~~~~~~~~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLT--------LVSQVCQ-ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred EEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 99999999988877 7877742 3478999999999863 55677887763
No 183
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.9e-25 Score=205.50 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=135.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++...|+....++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+....... .. .+.+
T Consensus 5 ~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~------~~--~i~~ 76 (232)
T cd03300 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH------KR--PVNT 76 (232)
T ss_pred eEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh------hc--ceEE
Confidence 344455555578999999999999999999999999999999999999999999977655332111 11 2222
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.....+...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ +|||+++.+|+ +|
T Consensus 77 -~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~--ll 152 (232)
T cd03300 77 -VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK--VL 152 (232)
T ss_pred -EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 33333222211222222110 0112233 44678998888899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |+|+|+..+..+.. ++..+.. ..|.+||+++|+.... +..+..|+.+.
T Consensus 153 llDEP~~gLD~~~~~~l~~--------~l~~~~~-~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQL--------ELKRLQK-ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999 99999999987777 7877752 2388999999999853 55667787663
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.5e-25 Score=226.44 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=139.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ...+.. .+.
T Consensus 8 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~---~~~~~~--~i~ 82 (501)
T PRK11288 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST---TAALAA--GVA 82 (501)
T ss_pred eeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH---HHHHhC--CEE
Confidence 356667766567899999999999999999999999999999999999999999997766532111 111222 232
Q ss_pred eeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ +.+.....+...+.+.+... ..+.+.. +++.+|+.+..++.+.+||+||+ +|||+++.+|+
T Consensus 83 ~-v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 83 I-IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEARE-QLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred E-EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHH-HHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 2 33433222211222222110 0112333 34688987777889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+..+++ ++.++. .+|.+||++||++... +.++..|+.+.
T Consensus 161 --lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 161 --VIAFDEPTSSLSAREIEQLFR--------VIRELR--AEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred --EEEEcCCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999 99999999988887 888875 4588999999998764 56777888764
No 185
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=4.7e-25 Score=203.63 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=120.0
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee-c---cccchhhhhHHHHHHHhhCcceeEecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA-G---DTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~-~---d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
..++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+ + +..+.... ....+ ....+.+ +.+.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~-~~~~~-~~~~i~~-~~q~ 98 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR-EVLEV-RRKTIGY-VSQF 98 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHH-HHHHH-HhcceEE-Eecc
Confidence 468999999999999999999999999999999999999999999963 2 22111111 11111 1112222 3343
Q ss_pred ccccHHHHHHHHHHh-----h----h-hhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 234 EKAKASSVLSQAVKR-----G----K-EQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~-----~----~-~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
....+...+.+.+.. . . .+.... +++.+|+.+. .+..+.+||+||+ +|||+++.+|+ +|+|||
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~--llllDE 175 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARE-LLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP--ILLLDE 175 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCC--EEEEcC
Confidence 332222112221110 0 0 112222 3467788653 4678999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+|+|+..+..+.. ++.++. .+|.++|++||+....
T Consensus 176 Pt~~LD~~~~~~l~~--------~l~~~~--~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 176 PTASLDAANRQVVVE--------LIAEAK--ARGAALIGIFHDEEVR 212 (224)
T ss_pred CcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHH
Confidence 99999999987777 888875 4588999999997654
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.8e-25 Score=212.32 Aligned_cols=193 Identities=17% Similarity=0.155 Sum_probs=134.4
Q ss_pred HHHHHHhccC-----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch-hhhhHHHHHH
Q 017380 148 NSVLDLLTKK-----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA-AASDQLEIWA 221 (372)
Q Consensus 148 ~~l~~~~~~~-----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~-~a~eql~~~~ 221 (372)
+++.+.|+.. ..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ........+.
T Consensus 10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 89 (289)
T PRK13645 10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLR 89 (289)
T ss_pred EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHh
Confidence 3555666543 368999999999999999999999999999999999999999999977654210 0000111222
Q ss_pred HhhCcceeEecccc--ccHHHHHHHHHHhhh----------hhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHH
Q 017380 222 ERTGCEIVVAEGEK--AKASSVLSQAVKRGK----------EQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 222 ~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAra 285 (372)
.. +.+ +.+.+. ..+ ..+.+.+.... ...++. +++.+|+. +..++.+.+||+||+ .||||
T Consensus 90 ~~--i~~-v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~-ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 90 KE--IGL-VFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPE-LLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred cc--EEE-EEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 22 222 333321 111 12222222110 011222 34677884 567888999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||++... +.++..|+.+.
T Consensus 165 l~~~p~--lLlLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 165 IAMDGN--TLVLDEPTGGLDPKGEEDFIN--------LFERLNK-EYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHhCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999 99999999987777 7777752 3478999999998753 55677887663
No 187
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=8.2e-25 Score=216.43 Aligned_cols=207 Identities=18% Similarity=0.218 Sum_probs=165.0
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++++|.|+...+++++||++.+|+|++|+|.||+|||||+++|.|+|+|++|+|.++|... +.... .-+.+.|+.
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v-~~~sP----~dA~~~GIG 82 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEV-RIKSP----RDAIRLGIG 82 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEe-ccCCH----HHHHHcCCc
Confidence 4788999988889999999999999999999999999999999999999999999977654 22111 123456666
Q ss_pred eeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
. +.|.....+...+.+++--. ..+..-..+.+..|+.-..+.++.+||-|+| .|-++|..+|+
T Consensus 83 M-VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~- 160 (501)
T COG3845 83 M-VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR- 160 (501)
T ss_pred E-EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC-
Confidence 6 55555544444444443211 1112223456788998888999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc---CCCCCCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV---EDLQPFD 362 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v---~Dl~~~~ 362 (372)
+||||| |+-|-|....++|. ++..+. +.|++||+|||.++.. +..+..|..+ ++..+.+
T Consensus 161 -iLILDEPTaVLTP~E~~~lf~--------~l~~l~--~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t 229 (501)
T COG3845 161 -LLILDEPTAVLTPQEADELFE--------ILRRLA--AEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETT 229 (501)
T ss_pred -EEEEcCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCC
Confidence 999999 99999999999998 999998 7899999999999876 6678899877 3366788
Q ss_pred HHHHHHHhcC
Q 017380 363 AEAFVNAIFS 372 (372)
Q Consensus 363 ~~~~v~~l~~ 372 (372)
++++++.++|
T Consensus 230 ~~ela~lMvG 239 (501)
T COG3845 230 EEELAELMVG 239 (501)
T ss_pred HHHHHHHhcC
Confidence 9999988764
No 188
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=3.5e-25 Score=193.78 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=134.1
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHH
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSV 241 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~ 241 (372)
.+++.++.|++++|+||+|+||||+++.|||+..|.+|.|.|.+.|.......+. .+.. ++++.+.+....
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~R--------PVSm-lFQEnNLFaHLt 87 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAER--------PVSM-LFQENNLFAHLT 87 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccC--------Chhh-hhhccccchhhh
Confidence 4667789999999999999999999999999999999999998887543322111 1222 334444444333
Q ss_pred HHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHH
Q 017380 242 LSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLP 307 (372)
Q Consensus 242 ~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~ 307 (372)
+..++... ..+.++.++ ..+|+..+.++++.+|||||| ++||+++.+-+ +|+||| ++.|||.-
T Consensus 88 V~qNigLGl~P~LkL~a~~r~~v~~aa-~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P--ilLLDEPFsALdP~L 164 (231)
T COG3840 88 VAQNIGLGLSPGLKLNAEQREKVEAAA-AQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP--ILLLDEPFSALDPAL 164 (231)
T ss_pred hhhhhcccCCcccccCHHHHHHHHHHH-HHhChhhHhhhCccccCchHHHHHHHHHHHhccCC--eEEecCchhhcCHHH
Confidence 33332211 123344444 578999999999999999999 99999999988 999999 99999999
Q ss_pred HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 308 ~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+.+... ++.++.. +++.|+++|||..+-. +.|+.+|+..
T Consensus 165 R~eMl~--------Lv~~l~~-E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 165 RAEMLA--------LVSQLCD-ERKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred HHHHHH--------HHHHHHH-hhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE
Confidence 988887 7888764 7799999999998765 6789999886
No 189
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=2.5e-25 Score=207.68 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=130.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--hhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--KNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|++ +|++|+|.+.+.+..+..... +. +.++
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~----~~-~~~i 79 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE----RA-RAGL 79 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHH----hh-ccce
Confidence 4555666555789999999999999999999999999999999995 689999999877653321111 10 1122
Q ss_pred ceeEeccccccHHHHHHHHHHh----------------hh-hhchHHHHHHhhCCC-ccchhhHh-HHHHHHH---HHHH
Q 017380 227 EIVVAEGEKAKASSVLSQAVKR----------------GK-EQGFDIVLCDTSGRL-HTNYSLME-ELVACKK---AVGK 284 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~d~vl~dt~G~~-~~~~~~~~-eLS~G~r---~iAr 284 (372)
.+ +.+.....+...+.+.+.. .. .+.+.. +++.+|+. ...++.+. +||+||+ .|||
T Consensus 80 ~~-v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FL-AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA-KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Ee-eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHH-HHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 22 2333222211111111100 00 111222 33567886 34566666 5999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+++|+..+..+.. +|.++. .+|.+||++||+.+.. +.++..|+.+.
T Consensus 158 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 158 MALLEPK--LAILDEIDSGLDIDALKIVAE--------GINRLR--EPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHhcCCC--EEEecCCcccCCHHHHHHHHH--------HHHHHH--HCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 9999999 999999 99999999988877 888875 4578999999998753 34567777653
No 190
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.9e-25 Score=225.13 Aligned_cols=203 Identities=14% Similarity=0.153 Sum_probs=141.5
Q ss_pred HHHHHHhc---cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLT---KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-NEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~---~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+++.+.|+ ...+++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+....... ..+.
T Consensus 263 ~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~---~~~~-- 337 (506)
T PRK13549 263 RNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ---QAIA-- 337 (506)
T ss_pred ecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH---HHHH--
Confidence 56666673 3356899999999999999999999999999999999998 5999999977654221111 1111
Q ss_pred hCcceeEeccc---cccHHHHHHHHHH--------------hh-hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---H
Q 017380 224 TGCEIVVAEGE---KAKASSVLSQAVK--------------RG-KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---A 281 (372)
Q Consensus 224 ~~v~~~~~~~~---~~~~~~~~~~~~~--------------~~-~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~ 281 (372)
.++.+ +.+.. ...+...+.+.+. .. ....++. +++.+|+. +..++++.+||+||+ .
T Consensus 338 ~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 338 QGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE-SIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred CCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHH-HHHhcCccCCCcccccccCCHHHHHHHH
Confidence 12322 33321 1111111111110 00 0112333 34678885 467889999999999 9
Q ss_pred HHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 282 VGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 282 iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
|||+++.+|+ +||||| |+|+|+..+..+++ ++.++. .+|.+||++|||++.. +.++.+|+.
T Consensus 416 lA~al~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 416 LAKCLLLNPK--ILILDEPTRGIDVGAKYEIYK--------LINQLV--QQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred HHHHHhhCCC--EEEEcCCCCCcCHhHHHHHHH--------HHHHHH--HCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999 999999 99999999988887 888886 4589999999998765 557889987
Q ss_pred cC--CCCCCCHHHHHHH
Q 017380 355 VE--DLQPFDAEAFVNA 369 (372)
Q Consensus 355 v~--Dl~~~~~~~~v~~ 369 (372)
+. +....+.+++...
T Consensus 484 ~~~~~~~~~~~~~~~~~ 500 (506)
T PRK13549 484 KGDLINHNLTQEQVMEA 500 (506)
T ss_pred EEEeccccCCHHHHHHH
Confidence 73 3344444555443
No 191
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=3.1e-25 Score=227.64 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=136.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+...+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+ +...+++
T Consensus 7 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~----~~~~i~~- 81 (490)
T PRK10938 7 SQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ----LQKLVSD- 81 (490)
T ss_pred EeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHH----HHHHhce-
Confidence 35666777656789999999999999999999999999999999999999999998665542221111 1111221
Q ss_pred eeEeccccc--------cHHHHHHHHHHh--hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKA--------KASSVLSQAVKR--GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.... .....+.+.+.. .....+.. +++.+|+.+..++++.+||+||+ +||+|++.+|+ +
T Consensus 82 --~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~--l 156 (490)
T PRK10938 82 --EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQ-LAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD--L 156 (490)
T ss_pred --eccCcchhhcccchhhccccHHHhcccchhHHHHHHH-HHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC--E
Confidence 1111100 000111222110 01122333 34788998888899999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+||| |+|||+..+..+.+ +|.++. .+|.+||++||+++.. +.++.+|+.+.
T Consensus 157 llLDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAE--------LLASLH--QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred EEEcCCcccCCHHHHHHHHH--------HHHHHH--hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999 99999999988887 888886 3488999999998753 56778887663
No 192
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-25 Score=212.13 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=135.5
Q ss_pred HHHHHHhc--cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLT--KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~--~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++.+.|+ ....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... ...+....+
T Consensus 11 ~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~----~~~~~~~i~ 86 (271)
T PRK13632 11 ENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LKEIRKKIG 86 (271)
T ss_pred EeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC----HHHHhcceE
Confidence 35566674 345789999999999999999999999999999999999999999999876653211 112222222
Q ss_pred cceeEecccc-ccHHHHHHHHHHhh------hh---hchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 226 CEIVVAEGEK-AKASSVLSQAVKRG------KE---QGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 226 v~~~~~~~~~-~~~~~~~~~~~~~~------~~---~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ +.+.+. ..+...+.+.+... .. ......+++.+|+.+..++.+.+||+||+ .||||++.+|+
T Consensus 87 --~-v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~- 162 (271)
T PRK13632 87 --I-IFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE- 162 (271)
T ss_pred --E-EEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC-
Confidence 2 333321 11112223322211 00 11112234677888888899999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..++. ++.++.. ..+.++|++||++... +.++.+|+.+
T Consensus 163 -lllLDEP~~gLD~~~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 163 -IIIFDESTSMLDPKGKREIKK--------IMVDLRK-TRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred -EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 999999 99999999988887 8887752 2247999999998763 4566777765
No 193
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=211.58 Aligned_cols=189 Identities=18% Similarity=0.190 Sum_probs=135.6
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC---CeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG---AKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~---G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+. ...++++||++.+|++++|+||||||||||+++|+|+++|++ |+|.+.+.+..+... ..+...
T Consensus 10 ~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~----~~~~~~ 85 (282)
T PRK13640 10 HVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV----WDIREK 85 (282)
T ss_pred EEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH----HHHHhh
Confidence 45555643 347899999999999999999999999999999999999976 899998766532211 111222
Q ss_pred hCcceeEecccc-ccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 224 TGCEIVVAEGEK-AKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 224 ~~v~~~~~~~~~-~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
.+ + +.+.+. ..+...+.+.+... . .+.++. +++.+|+.+..++++.+||+||+ .||+|++.+
T Consensus 86 ig--~-v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 86 VG--I-VFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRD-VLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred eE--E-EEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHH-HHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 22 2 333321 11111222222211 0 011233 34678988888899999999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|+|+..+..+.. ++.++.. +.|.+||++||+++.. +..+.+|+.++
T Consensus 162 P~--llllDEPt~gLD~~~~~~l~~--------~l~~l~~-~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 162 PK--IIILDESTSMLDPAGKEQILK--------LIRKLKK-KNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred CC--EEEEECCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99 999999 99999999988887 7777752 3488999999998774 45667787764
No 194
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=207.04 Aligned_cols=189 Identities=14% Similarity=0.194 Sum_probs=132.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.+.+..... .. ...+..
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~-~~-~~~~~~ 87 (253)
T PRK14242 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH-VD-VVELRR 87 (253)
T ss_pred eeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc-cC-HHHHhh
Confidence 456667766567899999999999999999999999999999999974 57999999876643210 00 111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+. .+.+.+... ..+.+.. +.+.+|+.+ ..++.+.+||+||+ .|||
T Consensus 88 --~i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 88 --RVGM-VFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVER-SLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred --cEEE-EecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 2222 3333322221 222222110 0111222 335667643 34667889999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..++. +|.++. . +.+||++||+++.. +.++..|+.+.
T Consensus 163 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 163 ALAVEPE--VLLMDEPASALDPIATQKIEE--------LIHELK--A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988877 888874 3 68999999999764 45677887763
No 195
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.6e-25 Score=203.87 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=129.3
Q ss_pred HHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.+.|+.. ..++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.+.+..+.. ...+....+
T Consensus 6 l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~i~-- 79 (234)
T cd03251 6 VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT----LASLRRQIG-- 79 (234)
T ss_pred EEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC----HHHHHhhEE--
Confidence 34445443 5688999999999999999999999999999999999999999999776542211 111122222
Q ss_pred eeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+ +.+.....+ ..+++.+.... .......+ +.+ |+.+..+..+.+||+||+ .|||+++.+
T Consensus 80 ~-~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 80 L-VSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFI-MELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred E-eCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHH-HhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 2 333322222 12233322110 00112222 222 455555677889999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|+|+..+..+.+ ++.++. ++.+||++||++... +..+.+|+.+.
T Consensus 157 p~--lllLDEP~~~LD~~~~~~l~~--------~l~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 157 PP--ILILDEATSALDTESERLVQA--------ALERLM---KNRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred CC--EEEEeCccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 99 999999 99999999988777 888774 378999999998773 66778887764
No 196
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.1e-25 Score=206.39 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=132.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++...|++...++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+...... . ...+..
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~-~-~~~~~~ 88 (254)
T PRK14273 11 ENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF-D-ILELRR 88 (254)
T ss_pred eeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc-c-HHHHhh
Confidence 4566677666678999999999999999999999999999999999987 48999997765432100 0 111122
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
++.+ +.+.....+ ..+++.+.... ...+... .+.+|+. +..+..+.+||+||+ +|||
T Consensus 89 --~i~~-v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 89 --KIGM-VFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQS-LKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred --ceEE-Eeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 2322 333332222 12222221100 0112222 3455652 345678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..++. +|.++. . +.++|++||++... +.++..|+.+.
T Consensus 164 al~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 164 TLAIEPN--VILMDEPTSALDPISTGKIEE--------LIINLK--E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HHHcCCC--EEEEeCCCcccCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988887 888884 3 68999999999864 55678888764
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.1e-25 Score=204.66 Aligned_cols=186 Identities=18% Similarity=0.199 Sum_probs=135.0
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+...|+.. .+++++|++.+|++++|+||||+||||++++|+|+++|++|+|.+.+.+...... . +..+.+
T Consensus 6 l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~------~--~~~i~~- 75 (235)
T cd03299 6 LSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP------E--KRDISY- 75 (235)
T ss_pred EEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh------h--HcCEEE-
Confidence 33445443 6889999999999999999999999999999999999999999998876543211 0 112222
Q ss_pred EeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 230 VAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
+.+.....+...+.+.+... ....+.. +++.+|+.+..++.+.+||+||+ +||||++.+|+ +++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~--lll 152 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE-IAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK--ILL 152 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC--EEE
Confidence 33333222211222222110 0111222 34678888878899999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
||| |+|+|+..+..++. ++.++.. .++.++|++||++... +..+..|+.+++
T Consensus 153 lDEPt~gLD~~~~~~l~~--------~l~~~~~-~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 153 LDEPFSALDVRTKEKLRE--------ELKKIRK-EFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred ECCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999 99999999988877 7887752 3488999999999863 456778887643
No 198
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.2e-25 Score=206.58 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=133.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+.+..... .. ...+..
T Consensus 16 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~-~~-~~~~~~ 93 (258)
T PRK14268 16 ENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD-VD-VVELRK 93 (258)
T ss_pred eeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc-ch-HHHHhh
Confidence 4666677665678999999999999999999999999999999999975 7999999776542211 00 111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
. +.+ +.+.....+ ..+.+.+.... ...+.. +++.+|+. +..+..+.+||+||+ +|||+
T Consensus 94 ~--i~~-v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 94 N--VGM-VFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVEN-ALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred h--EEE-EecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 2 222 333333222 22222222110 011222 34667763 345678899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++.+|+ +|+||| |+|+|+..+..+.+ ++.++. . +.++|++||++... +..+..|+.+
T Consensus 169 l~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~l~--~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 169 LAVKPK--IILFDEPTSALDPISTARIED--------LIMNLK--K-DYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HHcCCC--EEEEeCCCcccCHHHHHHHHH--------HHHHHh--h-CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999 999999 99999999988877 888774 2 68999999999764 4567788765
No 199
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=5e-25 Score=205.18 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=127.8
Q ss_pred HHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+...|+. ...++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.+...... ..+....+
T Consensus 6 l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~i~-- 79 (237)
T cd03252 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP----AWLRRQVG-- 79 (237)
T ss_pred EEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH----HHHhhcEE--
Confidence 3445542 346889999999999999999999999999999999999999999997765422111 11222222
Q ss_pred eeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+ +.+.....+. .+.+.+.... ..+...++ +.. |+....+..+.+||+||+ .|||+++.+
T Consensus 80 ~-~~q~~~~~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 80 V-VLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFI-SELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred E-EcCCchhccc-hHHHHhhccCCCCCHHHHHHHHHHcCcHHHH-HhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 2 3333222211 2222222100 00111111 222 334445667899999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|+|+..+..+.. ++.++. . |.++|++||++... +.++.+|+.+.
T Consensus 157 p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 157 PR--ILIFDEATSALDYESEHAIMR--------NMHDIC--A-GRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 (237)
T ss_pred CC--EEEEeCCcccCCHHHHHHHHH--------HHHHhc--C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99 999999 99999999988877 787774 3 78999999999763 56677887764
No 200
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.9e-25 Score=207.28 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=133.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..... .. ...+...
T Consensus 9 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~-~~-~~~~~~~ 86 (253)
T PRK14267 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD-VD-PIEVRRE 86 (253)
T ss_pred eEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc-cC-hHHHhhc
Confidence 555667665678999999999999999999999999999999999987 4899999876653100 00 1112222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh--------h----hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG--------K----EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
+.+ +.+.....+...+.+.+... . ...+.. +++.+|+. +..+..+.+||+||+ +|||
T Consensus 87 --i~~-~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 87 --VGM-VFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred --eeE-EecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHH-HHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 222 33433332221222222110 0 011222 33566763 345778999999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.. +|.++. . +.++|++||++... +.++.+|+.++
T Consensus 163 al~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 163 ALAMKPK--ILLMDEPTANIDPVGTAKIEE--------LLFELK--K-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHhcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--h-CCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988887 788774 2 58999999998764 55677887763
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=1.2e-24 Score=224.95 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=139.4
Q ss_pred HHHHHHhcc-----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe-eccccchhhh--hHHHH
Q 017380 148 NSVLDLLTK-----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA-AGDTFRAAAS--DQLEI 219 (372)
Q Consensus 148 ~~l~~~~~~-----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~-~~d~~r~~a~--eql~~ 219 (372)
+++.+.|+. ..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+. +.+....... .+...
T Consensus 283 ~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~ 362 (520)
T TIGR03269 283 RNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362 (520)
T ss_pred eccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHH
Confidence 345555631 246889999999999999999999999999999999999999999995 4332111000 01111
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhh---------hhhchHHHHHHhhCCCc-----cchhhHhHHHHHHH---HH
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRG---------KEQGFDIVLCDTSGRLH-----TNYSLMEELVACKK---AV 282 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~vl~dt~G~~~-----~~~~~~~eLS~G~r---~i 282 (372)
+... +.+ +.+.....+...+.+.+... ....+.. +++.+|+.+ ..++++.+||+||+ +|
T Consensus 363 ~~~~--i~~-v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 363 AKRY--IGI-LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI-TLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred Hhhh--EEE-EccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHH-HHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 1122 222 34433222222223222210 0112223 346778864 46789999999999 99
Q ss_pred HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 283 GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 283 Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|||++.+|+ +||||| |+|||+..+..+.. +|.++.. ..|.+||++||+++.. +.++.+|+.+
T Consensus 439 aral~~~p~--lLllDEPt~~LD~~~~~~l~~--------~l~~l~~-~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 439 AQVLIKEPR--IVILDEPTGTMDPITKVDVTH--------SILKARE-EMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-HcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999 99999999988887 8888752 3488999999998764 5567788876
Q ss_pred CCCCCCCHHHHHHH
Q 017380 356 EDLQPFDAEAFVNA 369 (372)
Q Consensus 356 ~Dl~~~~~~~~v~~ 369 (372)
.+ -+++++.+.
T Consensus 508 ~~---g~~~~~~~~ 518 (520)
T TIGR03269 508 KI---GDPEEIVEE 518 (520)
T ss_pred EE---CCHHHHHhh
Confidence 43 245555544
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=7.6e-25 Score=208.06 Aligned_cols=184 Identities=15% Similarity=0.183 Sum_probs=129.6
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc-
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK- 235 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~- 235 (372)
...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+...... .....+...++ + +.+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~-~~~~~~~~~i~--~-v~q~~~~ 100 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR-AQRKAFRRDIQ--M-VFQDSIS 100 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh-hHHHHHHhcEE--E-EEcChhh
Confidence 356899999999999999999999999999999999999999999997765533211 11112222222 2 333321
Q ss_pred -ccHHHHHHHHH----H------hh-hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 236 -AKASSVLSQAV----K------RG-KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 236 -~~~~~~~~~~~----~------~~-~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
..+...+.+.+ . .. .....+.+ ++.+|+. +..+..+.+||+||+ .|||+++.+|+ +|+|||
T Consensus 101 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~--lllLDE 177 (268)
T PRK10419 101 AVNPRKTVREIIREPLRHLLSLDKAERLARASEM-LRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPK--LLILDE 177 (268)
T ss_pred ccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHH-HHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 11111111111 0 00 11123333 4677886 467888999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+|+|+..+..++. ++.++.. ..+.++|++||+.... +.++..|+.++
T Consensus 178 Pt~~LD~~~~~~~~~--------~l~~~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 178 AVSNLDLVLQAGVIR--------LLKKLQQ-QFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred CCcccCHHHHHHHHH--------HHHHHHH-HcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999977777 7777752 3478999999998754 45677887653
No 203
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=5e-25 Score=209.82 Aligned_cols=189 Identities=17% Similarity=0.182 Sum_probs=134.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc--------CCeEEEeeccccchhhhhHHHHH
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--------GAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~--------~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+...... .+ +
T Consensus 6 nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~-~~---~ 81 (272)
T PRK13547 6 HLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA-PR---L 81 (272)
T ss_pred EEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH-HH---H
Confidence 4455566556789999999999999999999999999999999999997 8999997765432111 11 1
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHH
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iA 283 (372)
....+ + +.+.....+...+.+.+... ....... +++.+|+.+..++.+.+||+||+ .||
T Consensus 82 ~~~~~--~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 82 ARLRA--V-LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQ-ALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HhhcE--E-ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHH-HHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 11121 1 22222111111122222110 0011222 34677888777888999999999 999
Q ss_pred HHHh---------CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------ee
Q 017380 284 KVVN---------GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VK 347 (372)
Q Consensus 284 ral~---------~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~ 347 (372)
|+++ .+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.++|+++|+++.. +.
T Consensus 158 ral~~~~~~~~~~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPR--YLLLDEPTAALDLAHQHRLLD--------TVRRLAR-DWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred HHHhccccccccCCCCC--EEEEcCccccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEECCHHHHHHhCCEEE
Confidence 9999 4999 999999 99999999988887 8888752 3378999999998764 56
Q ss_pred eeccCcccC
Q 017380 348 FVGVGEGVE 356 (372)
Q Consensus 348 ~i~~Ge~v~ 356 (372)
++..|+.+.
T Consensus 227 ~l~~G~i~~ 235 (272)
T PRK13547 227 MLADGAIVA 235 (272)
T ss_pred EEECCeEEE
Confidence 778888763
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=219.66 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=144.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc----CCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE----GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~----~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
.+++|+||++.+||+++|||.+||||||+...|.|++++. +|+|.+.+.|.......+..+..+.++.+ ++|.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~---i~Q~ 99 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAM---IFQD 99 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEE---EecC
Confidence 4689999999999999999999999999999999999876 79999998887665554444455555554 4444
Q ss_pred c--cccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchh--hHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 234 E--KAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYS--LMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 234 ~--~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~--~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
+ ...|...+.+.+.+. ..+....-+++.+|+.+.... ++.+|||||| .||+||+.+|+ +||
T Consensus 100 p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~--LLI 177 (539)
T COG1123 100 PMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK--LLI 177 (539)
T ss_pred chhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCC--EEE
Confidence 3 233433332222110 111222234578899877655 9999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+|| |++||+..|.++++ +|..+.. +.|.++|+||||+++. +.++-.|+.||.
T Consensus 178 aDEPTTaLDvt~q~qIL~--------llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 178 ADEPTTALDVTTQAQILD--------LLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred ECCCccccCHHHHHHHHH--------HHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999 99999999999998 8999874 6799999999999986 667889988854
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.9e-25 Score=204.55 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=134.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK---NEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~---~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+... ..+...
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~----~~~~~~- 80 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV----VALRKN- 80 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH----HHHhhh-
Confidence 456667776567899999999999999999999999999999999984 689999998876543211 112222
Q ss_pred CcceeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
+.+ +++.....+. .+++.+... ....+. -+++.+|+. +..++.+.+||+||+ ++||+
T Consensus 81 -i~~-~~q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 -VGM-VFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVV-DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred -EEE-EecCCccccc-cHHHHhhhHHhhcCcccChHHHHHHHH-HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 222 3444333332 223332111 001122 234677874 234667889999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..++. .+.++. . +.++|++||++... +.++.+|+.++
T Consensus 157 l~~~p~--lllLDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 157 LAIKPK--LLLLDEPTSALDPISSGVIEE--------LLKELS--H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HhcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHh--C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 999999 999999 99999999977777 777774 3 78999999998853 55778888763
No 206
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.5e-25 Score=207.21 Aligned_cols=186 Identities=14% Similarity=0.148 Sum_probs=132.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..+... ..+..
T Consensus 8 ~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~----~~~~~- 82 (250)
T PRK14247 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV----IELRR- 82 (250)
T ss_pred eeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH----HHHhc-
Confidence 455566655678999999999999999999999999999999999974 69999998776543211 11222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh--------h----hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG--------K----EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.+...+...+.+.+... . .+.... +++.+|+. +..+..+.+||+||+ ++||
T Consensus 83 -~i~~-v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 83 -RVQM-VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRW-ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred -cEEE-EeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHH-HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 2222 34433222222222222110 0 011222 33566764 245778899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||++... +..+.+|+.+
T Consensus 160 al~~~p~--lllLDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 160 ALAFQPE--VLLADEPTANLDPENTAKIES--------LFLELK--K-DMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred HHhcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 9999999 999999 99999999988887 777774 3 68999999998764 4567788765
No 207
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.1e-25 Score=209.70 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=135.7
Q ss_pred HHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 149 SVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 149 ~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
++...|+. ...++++||++.+|++++|+|+||+|||||+++|+|+++|++|+|.+.+.+..... ...+....+
T Consensus 9 ~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----~~~~~~~i~ 84 (277)
T PRK13642 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN----VWNLRRKIG 84 (277)
T ss_pred EEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCC----HHHHhcceE
Confidence 44555653 13689999999999999999999999999999999999999999999876653211 111222222
Q ss_pred cceeEecccc-ccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 226 CEIVVAEGEK-AKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 226 v~~~~~~~~~-~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ +.+.+. ..+...+.+.+... . .+.++ .+++.+|+.+..++.+.+||+||+ .|||+++.+|+
T Consensus 85 --~-v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 85 --M-VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVD-EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred --E-EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHH-HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2 334321 11111222222210 0 01122 234677887778889999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+.. ++.++.. ..|.++|++||++... +.++..|+.++
T Consensus 161 --llllDEPt~~LD~~~~~~l~~--------~l~~l~~-~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 161 --IIILDESTSMLDPTGRQEIMR--------VIHEIKE-KYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988877 8888752 3488999999998874 55667787664
No 208
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.4e-25 Score=208.02 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=133.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..... . ....+..
T Consensus 17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~-~-~~~~~~~ 94 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK-Q-DIALLRA 94 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc-c-chHHHhc
Confidence 456667766567899999999999999999999999999999999986 47899999776642110 0 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh----------h-hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG----------K-EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
..+ + +.+.....+ ..+.+.+... . .+.+.. +++.+|+. +..++.+.+||+||+ +|||
T Consensus 95 ~i~--~-~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 95 KVG--M-VFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEW-ALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred ceE--E-EecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHH-HHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 222 2 333332222 1222222210 0 011222 34677763 345677889999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|++.+|+ +|+||| |+|+|+..+..++. ++.++. . +.++|++||++... +.++.+|+.+.
T Consensus 170 al~~~p~--lllLDEPt~~LD~~~~~~l~~--------~L~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 170 GIAIRPE--VLLLDEPCSALDPISTGRIEE--------LITELK--Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHCCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999977777 788774 2 67999999998764 45677888764
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=223.52 Aligned_cols=191 Identities=15% Similarity=0.221 Sum_probs=134.6
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc---c
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE---K 235 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~---~ 235 (372)
.++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.... ..+.. ++.+ +.+.. .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~~~--~i~~-v~q~~~~~~ 351 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL---DAVKK--GMAY-ITESRRDNG 351 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH---HHHHC--CcEE-ccCccccCC
Confidence 57899999999999999999999999999999999999999999977654221111 11111 2222 23221 1
Q ss_pred ccHHHHHHHHHHh-------------------hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 236 AKASSVLSQAVKR-------------------GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 236 ~~~~~~~~~~~~~-------------------~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
..+...+.+.+.. .....++.+ ++.+|+. +..++++.+||+||| .|||+++.+|+
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~- 429 (510)
T PRK09700 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQ-RELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPE- 429 (510)
T ss_pred CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHH-HHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCC-
Confidence 1111111111110 001122333 4678986 677899999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCC---CCCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDL---QPFD 362 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl---~~~~ 362 (372)
+||||| |+|||+..+..+++ +|.++. .+|.+||++|||++.. +.++.+|+.+.+. ...+
T Consensus 430 -lLlLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 498 (510)
T PRK09700 430 -VIIFDEPTRGIDVGAKAEIYK--------VMRQLA--DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMS 498 (510)
T ss_pred -EEEECCCCCCcCHHHHHHHHH--------HHHHHH--HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcccCC
Confidence 999999 99999999988887 888876 4588999999998764 5577888876432 3444
Q ss_pred HHHHHH
Q 017380 363 AEAFVN 368 (372)
Q Consensus 363 ~~~~v~ 368 (372)
.+.+..
T Consensus 499 ~~~~~~ 504 (510)
T PRK09700 499 EEEIMA 504 (510)
T ss_pred HHHHHH
Confidence 444443
No 210
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=9.3e-25 Score=197.76 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=120.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+... +.++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+..+.. ....+ +
T Consensus 6 ~l~~~~~~~~-l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--------~~~~~--~ 74 (195)
T PRK13541 6 QLQFNIEQKN-LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--------KPYCT--Y 74 (195)
T ss_pred EeeEEECCcE-EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--------hhhEE--e
Confidence 3444554433 34599999999999999999999999999999999999999999876643211 01111 1
Q ss_pred eEeccccccHHHHHHHHHHh-----hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 229 VVAEGEKAKASSVLSQAVKR-----GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+.+.....+...+.+.+.. .....+.. +++.+|+.+..++.+.+||+||+ .+||+++.+|+ +|+|||
T Consensus 75 -~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~--~lllDEP 150 (195)
T PRK13541 75 -IGHNLGLKLEMTVFENLKFWSEIYNSAETLYA-AIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD--LWLLDEV 150 (195)
T ss_pred -ccCCcCCCccCCHHHHHHHHHHhcccHHHHHH-HHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 2221111111111222111 01112233 33677887777889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
|+|+|+..+..+.. ++.... .++.++|+++|+...
T Consensus 151 ~~~LD~~~~~~l~~--------~l~~~~--~~~~tiii~sh~~~~ 185 (195)
T PRK13541 151 ETNLSKENRDLLNN--------LIVMKA--NSGGIVLLSSHLESS 185 (195)
T ss_pred cccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCccc
Confidence 99999999877776 776543 458899999999864
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=1.7e-24 Score=222.66 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=135.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..+.... ..+. ..+
T Consensus 6 ~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~---~~~~--~~i 80 (500)
T TIGR02633 6 GIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR---DTER--AGI 80 (500)
T ss_pred eEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH---HHHh--CCE
Confidence 455667665678999999999999999999999999999999999986 799999977665321110 1111 123
Q ss_pred ceeEeccccccHHHHHHHHHHhh-------------h-hhchHHHHHHhhCCCccc-hhhHhHHHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG-------------K-EQGFDIVLCDTSGRLHTN-YSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~r---~iAral~~ 288 (372)
.+ +.+.....+...+.+.+... . ...+.. +++.+|+.+.. ++.+.+||+||+ .||++++.
T Consensus 81 ~~-v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 81 VI-IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKN-LLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred EE-EeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHH-HHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 22 33332222111122221110 0 111233 34677887653 577999999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|+|+..+..+.+ +|.++. .+|.+||++||+++.. +.++.+|+.+.
T Consensus 159 ~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 159 QAR--LLILDEPSSSLTEKETEILLD--------IIRDLK--AHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 999 999999 99999999988887 888885 4588999999998764 56788888763
No 212
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=4.5e-25 Score=232.87 Aligned_cols=236 Identities=18% Similarity=0.137 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHHHhccC--CCCCccceeccCCeEEEEEcC
Q 017380 102 VLDELEEALLVSDFGPRITIKIVESLRDDILAGK-LKSGPDIKDALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGV 178 (372)
Q Consensus 102 ~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGp 178 (372)
.+.++...+.+..+..+...++++.-.|...++. ...+.-..++-.+++...|+.. ..++|+|+++++||.++|||+
T Consensus 428 ~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~ 507 (709)
T COG2274 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECC
Confidence 4556666677777777777777766554332221 1111111234457888899876 578999999999999999999
Q ss_pred CCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHh----------
Q 017380 179 NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKR---------- 248 (372)
Q Consensus 179 NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------- 248 (372)
|||||||++++|.|+|+|+.|+|.+++.|.-... +..+.+.+++ +.++....... +.+++..
T Consensus 508 SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~----~~~lR~~ig~---V~Q~~~Lf~gS-I~eNi~l~~p~~~~e~i 579 (709)
T COG2274 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID----LASLRRQVGY---VLQDPFLFSGS-IRENIALGNPEATDEEI 579 (709)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC----HHHHHhheeE---EcccchhhcCc-HHHHHhcCCCCCCHHHH
Confidence 9999999999999999999999999988864432 2233344443 55554433322 2333222
Q ss_pred ---hhhhchHHHHHHh-hCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchh
Q 017380 249 ---GKEQGFDIVLCDT-SGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITG 320 (372)
Q Consensus 249 ---~~~~~~d~vl~dt-~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tg 320 (372)
+...+.+..+... .|......+....|||||| +||||+..+|+ +|+||| |+++|+.++..+.+
T Consensus 580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~--ILlLDEaTSaLD~~sE~~I~~------- 650 (709)
T COG2274 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK--ILLLDEATSALDPETEAIILQ------- 650 (709)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC--EEEEeCcccccCHhHHHHHHH-------
Confidence 2222333333211 1333333455567999999 99999999999 999999 99999999988887
Q ss_pred hHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCCC
Q 017380 321 LILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVEDL 358 (372)
Q Consensus 321 iiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~Dl 358 (372)
-+.++ ..|.|+|+|+|++... |..+..|+.++|-
T Consensus 651 -~L~~~---~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 651 -NLLQI---LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred -HHHHH---hcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 44544 4579999999998775 6778899888654
No 213
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=193.69 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=133.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+++........+++++|++.+||+.+|+||||+|||||++.|+|.+.|++|+|.+.+.+.-...+.+ .+....+
T Consensus 6 nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~----lA~~raV-- 79 (259)
T COG4559 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE----LARHRAV-- 79 (259)
T ss_pred eeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH----HHHHhhh--
Confidence 4444555566789999999999999999999999999999999999999999999877643222211 1222222
Q ss_pred eEecccc-ccHHHHHHHHHHhh-------h----hhc-hHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 229 VVAEGEK-AKASSVLSQAVKRG-------K----EQG-FDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~-------~----~~~-~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
..+... .+|. .+.+.+... . ... .+..+ ...++.++..+...+||||++ .+||+|++-..-
T Consensus 80 -lpQ~s~laFpF-tv~eVV~mGr~p~~~g~~~~e~~~i~~~al-a~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 -LPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQAL-AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred -cccCcccccce-EHHHHHHhcccccccCCCchhhHHHHHHHH-HHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 111111 1111 111222111 0 111 22334 466888888899999999999 899998864322
Q ss_pred ----eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee------eeccCccc
Q 017380 293 ----ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK------FVGVGEGV 355 (372)
Q Consensus 293 ----~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~------~i~~Ge~v 355 (372)
.+|+||| |+.+|...|...+. +...+. +.|+.|+.|.||+++... .+..|..+
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~--------laR~la--~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLR--------LARQLA--REGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHH--------HHHHHH--hcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 2999999 99999999999888 888887 678999999999999844 46677776
No 214
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.1e-25 Score=232.06 Aligned_cols=183 Identities=14% Similarity=0.264 Sum_probs=134.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--c
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--K 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~ 235 (372)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .....+.. .+.+ +.+.+ .
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~~~--~i~~-v~Q~~~~~ 413 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP-GKLQALRR--DIQF-IFQDPYAS 413 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH-HHHHHhcC--CeEE-EecCchhh
Confidence 46789999999999999999999999999999999999999999998776543211 11222222 2333 44443 1
Q ss_pred ccHHHHHHHHHHh-----h------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 236 AKASSVLSQAVKR-----G------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 236 ~~~~~~~~~~~~~-----~------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
..+...+.+.+.. . ....+.. +++.+|+. ...++++.+||+||| +|||||+.+|+ +|||||
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~--llllDEP 490 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPGKAAAARVAW-LLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK--VIIADEA 490 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 2222122222211 0 0112333 34678985 467889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|++||+..+.++++ +|.++.. ..|.+||++|||++.. +.++..|+.++
T Consensus 491 ts~LD~~~~~~i~~--------ll~~l~~-~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 491 VSALDVSIRGQIIN--------LLLDLQR-DFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred cccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999988888 8888863 3488999999999875 66778888774
No 215
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=1.1e-24 Score=205.22 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=122.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.. +.+.
T Consensus 9 ~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~--~i~~--------------- 71 (251)
T PRK09544 9 NVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL--RIGY--------------- 71 (251)
T ss_pred ceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc--CEEE---------------
Confidence 45566665567899999999999999999999999999999999999999999985310 1111
Q ss_pred eEeccccccHH--HHHHHHHHhh---hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 229 VVAEGEKAKAS--SVLSQAVKRG---KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 229 ~~~~~~~~~~~--~~~~~~~~~~---~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+.+.....+. ..+.+.+... ....+.. +++.+|+.+..+.++.+||+||+ +||++++.+|+ +|+|||
T Consensus 72 -v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~--lllLDEP 147 (251)
T PRK09544 72 -VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP-ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQ--LLVLDEP 147 (251)
T ss_pred -eccccccccccChhHHHHHhccccccHHHHHH-HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 1111111100 0111111100 0112222 34677888878889999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+|+|+..+..++. +|.++.. ..+.+||++||+.+..
T Consensus 148 t~~LD~~~~~~l~~--------~L~~~~~-~~g~tiiivsH~~~~i 184 (251)
T PRK09544 148 TQGVDVNGQVALYD--------LIDQLRR-ELDCAVLMVSHDLHLV 184 (251)
T ss_pred CcCCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHH
Confidence 99999999988887 7887752 2378999999999874
No 216
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.9e-25 Score=197.50 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=111.0
Q ss_pred HHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeE
Q 017380 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVV 230 (372)
Q Consensus 151 ~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~ 230 (372)
...|+....++++||++++|++++|+||||+|||||++.|+|+++|++|+|.+.+.+...... ....+.. .+.+ +
T Consensus 7 ~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~--~i~~-~ 81 (178)
T cd03229 7 SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPLRR--RIGM-V 81 (178)
T ss_pred EEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--hHHHHhh--cEEE-E
Confidence 344554456889999999999999999999999999999999999999999997765432110 0111212 2322 3
Q ss_pred eccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHH
Q 017380 231 AEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNML 306 (372)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~ 306 (372)
.+.+...+...+.+ ..... ||+||+ .+||+++.+|+ +++||| |+|+|+.
T Consensus 82 ~q~~~~~~~~t~~~----------------~l~~~---------lS~G~~qr~~la~al~~~p~--llilDEP~~~LD~~ 134 (178)
T cd03229 82 FQDFALFPHLTVLE----------------NIALG---------LSGGQQQRVALARALAMDPD--VLLLDEPTSALDPI 134 (178)
T ss_pred ecCCccCCCCCHHH----------------heeec---------CCHHHHHHHHHHHHHHCCCC--EEEEeCCcccCCHH
Confidence 33322211111111 11111 999999 99999999999 999999 9999999
Q ss_pred HHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 307 PQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 307 ~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+..++. ++.++.. ..+.++|+++|+....
T Consensus 135 ~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~ 164 (178)
T cd03229 135 TRREVRA--------LLKSLQA-QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHH
Confidence 9988887 8888762 2378999999998654
No 217
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=7.4e-25 Score=204.35 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=133.9
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+...|+....++++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+..... + . +..+.+
T Consensus 6 l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~---~--~~~i~~- 76 (237)
T TIGR00968 6 ISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---A---R--DRKIGF- 76 (237)
T ss_pred EEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---h---h--hcCEEE-
Confidence 344555556789999999999999999999999999999999999999999999776653211 1 1 112222
Q ss_pred EeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 230 VAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
+.+.+...+...+.+.+... ..+.++. +++.+++.+..+..+.+||+||+ +|||+++.+|+ +++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~--lll 153 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE-LLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ--VLL 153 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHH-HHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC--EEE
Confidence 33333222211112221110 0112233 34677887777888999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
||| |+|+|+..+..+.. ++.++.. ..+.++|++||+.... +..+.+|+.++
T Consensus 154 lDEP~~~LD~~~~~~~~~--------~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRS--------WLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred EcCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999 99999999987777 7777652 2378999999999863 55677888763
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7e-25 Score=194.96 Aligned_cols=147 Identities=22% Similarity=0.263 Sum_probs=110.3
Q ss_pred HHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEe
Q 017380 152 DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231 (372)
Q Consensus 152 ~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~ 231 (372)
+.|+....++++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+..... ..+.. .+.+ +.
T Consensus 8 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~--~i~~-~~ 79 (173)
T cd03230 8 KRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-----EEVKR--RIGY-LP 79 (173)
T ss_pred EEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-----Hhhhc--cEEE-Ee
Confidence 3444445688999999999999999999999999999999999999999999776543211 11112 2322 44
Q ss_pred ccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHH
Q 017380 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLP 307 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~ 307 (372)
+.....+...+.+. +. ||+||+ .|||+++.+|+ +|+||| |+++|+..
T Consensus 80 q~~~~~~~~tv~~~------------~~---------------LS~G~~qrv~laral~~~p~--illlDEPt~~LD~~~ 130 (173)
T cd03230 80 EEPSLYENLTVREN------------LK---------------LSGGMKQRLALAQALLHDPE--LLILDEPTSGLDPES 130 (173)
T ss_pred cCCccccCCcHHHH------------hh---------------cCHHHHHHHHHHHHHHcCCC--EEEEeCCccCCCHHH
Confidence 44322221111111 10 999999 99999999999 999999 99999999
Q ss_pred HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 308 ~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..+.+ ++.++. .+|.++|++||+....
T Consensus 131 ~~~l~~--------~l~~~~--~~g~tiii~th~~~~~ 158 (173)
T cd03230 131 RREFWE--------LLRELK--KEGKTILLSSHILEEA 158 (173)
T ss_pred HHHHHH--------HHHHHH--HCCCEEEEECCCHHHH
Confidence 988887 888875 3478999999998754
No 219
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-24 Score=201.60 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=127.7
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.++++|||++.+|++++|||.|||||||+-+.|.|+++|++|+|.+.+.|.....
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------- 81 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------- 81 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------------
Confidence 5688999999999999999999999999999999999999999999887742211
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHH
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREF 312 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~ 312 (372)
.....+.+..++ +.+|+.. ..++++.||||||+ .|||||+.+|+ ++|+|| ++.+|...|+++.
T Consensus 82 ---------~~~~~~~v~elL-~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~--liV~DEpvSaLDvSiqaqIl 149 (268)
T COG4608 82 ---------KEERRERVLELL-EKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPK--LIVADEPVSALDVSVQAQIL 149 (268)
T ss_pred ---------hhHHHHHHHHHH-HHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc--EEEecCchhhcchhHHHHHH
Confidence 000112233334 6778764 56899999999999 99999999999 999999 9999999999999
Q ss_pred hhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 313 ~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+ ++.++.. ..|-+.++|+||+... +..+-.|+.|+
T Consensus 150 n--------LL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 150 N--------LLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred H--------HHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 8 9999985 6699999999999886 55566787773
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-24 Score=207.07 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=134.4
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..... . ....+.
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~-~-~~~~~~ 101 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN-I-NVVNLR 101 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc-c-cHHHHh
Confidence 4677788876678899999999999999999999999999999999865 68999999776642210 0 011122
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh----h-------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG----K-------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iA 283 (372)
. .+.+ +.+.....+. .+++.+... . ...... ..+.+|+. +..++.+.+||+||+ .||
T Consensus 102 ~--~i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 102 R--EIGM-VFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEE-SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred c--cEEE-EecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 2 2222 4444333222 223222110 0 011122 23555663 345678899999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.+||++||++... +.++.+|..+.
T Consensus 177 ral~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 177 RTLAMKPA--VLLLDEPASALDPISNAKIEE--------LITELK--E-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHhCCCC--EEEEcCCCcccCHHHHHHHHH--------HHHHHh--c-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999 999999 99999999988777 888875 2 57999999998753 56677887763
No 221
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.91 E-value=4.6e-24 Score=198.07 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=125.8
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh----cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN----EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~----~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..+. .... ..+.+ +.+.+.
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~------~~~~--~~i~~-~~q~~~ 72 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------SIRG--RHIAT-IMQNPR 72 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh------hhhh--heeEE-EecCch
Confidence 5789999999999999999999999999999999998 899999977665221 1111 12222 333321
Q ss_pred --ccHHHHHHHH----HHh------hhhhchHHHHHHhhCCC---ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 236 --AKASSVLSQA----VKR------GKEQGFDIVLCDTSGRL---HTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 236 --~~~~~~~~~~----~~~------~~~~~~d~vl~dt~G~~---~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
..+...+.+. ... .....+.. +++.+|+. +..++.+.+||+||+ +|||+++.+|+ +|+|
T Consensus 73 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~--vllL 149 (230)
T TIGR02770 73 TAFNPLFTMGNHAIETLRSLGKLSKQARALILE-ALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPP--FLIA 149 (230)
T ss_pred hhcCcccCHHHHHHHHHHHcCccHHHHHHHHHH-HHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCC--EEEE
Confidence 1111111111 100 00112333 34677886 456788999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|| |+|+|+..+..++. ++.++.. +.+.+||+++|+++.. +.++.+|+.+.
T Consensus 150 DEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLK--------LLRELRQ-LFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred cCCccccCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99 99999999987777 7777752 3478999999998754 56778887763
No 222
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.4e-25 Score=230.42 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=137.6
Q ss_pred HHHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc-------cchh--hh
Q 017380 148 NSVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT-------FRAA--AS 214 (372)
Q Consensus 148 ~~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~-------~r~~--a~ 214 (372)
+++.+.|+. ..+++++||++.+|++++||||||||||||+++|+|+++|++|+|.+.+.+. .... ..
T Consensus 16 ~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 95 (623)
T PRK10261 16 ENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSA 95 (623)
T ss_pred eceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCH
Confidence 466677752 2468999999999999999999999999999999999999999999865321 0000 00
Q ss_pred hHHHHHHHhhCcceeEeccc--cccHHHHHHHHHHhh----------h-hhchHHHHHHhhCCCc---cchhhHhHHHHH
Q 017380 215 DQLEIWAERTGCEIVVAEGE--KAKASSVLSQAVKRG----------K-EQGFDIVLCDTSGRLH---TNYSLMEELVAC 278 (372)
Q Consensus 215 eql~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~----------~-~~~~d~vl~dt~G~~~---~~~~~~~eLS~G 278 (372)
.++..+. ...+.+ +.+.+ ...+...+.+.+... . ...+..+ ++.+|+.+ ..++++.+||+|
T Consensus 96 ~~~~~~r-~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-l~~~gL~~~~~~~~~~~~~LSgG 172 (623)
T PRK10261 96 AQMRHVR-GADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRM-LDQVRIPEAQTILSRYPHQLSGG 172 (623)
T ss_pred HHHHHHh-CCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHCCCCChhhHHhCCCccCCHH
Confidence 1111111 112333 44443 122222222222110 0 1123333 46778853 467889999999
Q ss_pred HH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eee
Q 017380 279 KK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKF 348 (372)
Q Consensus 279 ~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~ 348 (372)
|+ +||+||+.+|+ +||||| |++||+..+.+++. ++.++.. ..|.+||+||||++.. +.+
T Consensus 173 q~QRv~iA~AL~~~P~--lLllDEPt~~LD~~~~~~l~~--------ll~~l~~-~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 173 MRQRVMIAMALSCRPA--VLIADEPTTALDVTIQAQILQ--------LIKVLQK-EMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HHHHHHHHHHHhCCCC--EEEEeCCCCccCHHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 99 99999999999 999999 99999999988888 8888863 3488999999998764 667
Q ss_pred eccCcccCC
Q 017380 349 VGVGEGVED 357 (372)
Q Consensus 349 i~~Ge~v~D 357 (372)
+.+|+.+++
T Consensus 242 l~~G~i~~~ 250 (623)
T PRK10261 242 MYQGEAVET 250 (623)
T ss_pred eeCCeeccc
Confidence 788987753
No 223
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-24 Score=207.01 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=134.9
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..+.. .. ...+.
T Consensus 22 ~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-~~-~~~~~ 99 (267)
T PRK14235 22 ARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-LD-VVELR 99 (267)
T ss_pred EEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc-cc-hHHHh
Confidence 35777778765678999999999999999999999999999999999975 8999999876653211 00 11122
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh-----------h-hhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG-----------K-EQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AV 282 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~i 282 (372)
.. +.+ +.+.+...+. .+.+.+... . ...+.. +++.+|+.+ ..++.+.+||+||+ +|
T Consensus 100 ~~--i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 100 AR--VGM-VFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVET-SLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hc--eEE-EecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHH-HHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 22 222 3333332221 222222110 0 011222 346778743 34677899999999 99
Q ss_pred HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 283 GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 283 Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
||+++.+|+ +|+||| |+|+|+..+..+.. +|.++. . +.+||++||+++.. +.++..|+.+
T Consensus 175 aral~~~p~--lllLDEPt~~LD~~~~~~l~~--------~L~~l~--~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 175 ARAIAVSPE--VILMDEPCSALDPIATAKVEE--------LIDELR--Q-NYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHHHHcCCC--EEEEeCCCcCCCHHHHHHHHH--------HHHHHh--c-CCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 999999999 999999 99999999988777 888775 2 57999999998764 5567788776
Q ss_pred C
Q 017380 356 E 356 (372)
Q Consensus 356 ~ 356 (372)
.
T Consensus 242 ~ 242 (267)
T PRK14235 242 E 242 (267)
T ss_pred E
Confidence 3
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=2.9e-24 Score=220.96 Aligned_cols=203 Identities=14% Similarity=0.206 Sum_probs=139.5
Q ss_pred HHHHHHh---ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLL---TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~---~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+++.+.| +....++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+....... ..+..
T Consensus 261 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~---~~~~~- 336 (500)
T TIGR02633 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA---QAIRA- 336 (500)
T ss_pred eCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH---HHHhC-
Confidence 3455556 233568999999999999999999999999999999999995 899999977654221111 11111
Q ss_pred hCcceeEeccc---cccHHHHHHHH--------HH------hh-hhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---H
Q 017380 224 TGCEIVVAEGE---KAKASSVLSQA--------VK------RG-KEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---A 281 (372)
Q Consensus 224 ~~v~~~~~~~~---~~~~~~~~~~~--------~~------~~-~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~ 281 (372)
.+.+ +.+.. ...+...+.+. .. .. ....+..+ ++.+|+.+ ..++++.+||+||+ .
T Consensus 337 -~i~~-v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 337 -GIAM-VPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSA-IQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred -CCEE-cCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHH-HHhcCccCCCccCccccCCHHHHHHHH
Confidence 2222 22221 01110001110 00 00 01123333 46778864 46889999999999 9
Q ss_pred HHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 282 VGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 282 iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
|||+++.+|+ +|+||| |+|||+..+..+++ ++..+. .+|++||++|||++.. +.++.+|+.
T Consensus 414 la~al~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 414 LAKMLLTNPR--VLILDEPTRGVDVGAKYEIYK--------LINQLA--QEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred HHHHHhhCCC--EEEEcCCCCCcCHhHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999 999999 99999999988887 788886 4589999999999865 456788987
Q ss_pred cCCC--CCCCHHHHHHH
Q 017380 355 VEDL--QPFDAEAFVNA 369 (372)
Q Consensus 355 v~Dl--~~~~~~~~v~~ 369 (372)
+.+. .+++.++++..
T Consensus 482 ~~~~~~~~~~~~~~~~~ 498 (500)
T TIGR02633 482 KGDFVNHALTQEQVLAA 498 (500)
T ss_pred EEEEccccCCHHHHHHh
Confidence 7433 45555556543
No 225
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=2.7e-24 Score=199.07 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=130.0
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK---NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~---~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
++...|.+ ...++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+... ..+.
T Consensus 8 ~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-------~~~~ 80 (226)
T cd03234 8 DVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-------DQFQ 80 (226)
T ss_pred cceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-------HHhc
Confidence 44445543 356889999999999999999999999999999999999 899999997765421 1111
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh------------hh-hchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG------------KE-QGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
.. +.+ +.+.....+...+.+.+... .. ......+++..++.+..++.+.+||+||+ ++||+
T Consensus 81 ~~--i~~-~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 81 KC--VAY-VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred cc--EEE-eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 22 222 33333222221222222110 00 01122145667777777788999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccC--Cc-----eeeeccCccc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELG--IP-----VKFVGVGEGV 355 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~--~p-----i~~i~~Ge~v 355 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. .++.++|+++|+.. ++ +..+..|+.+
T Consensus 158 l~~~p~--illlDEP~~gLD~~~~~~~~~--------~l~~~~--~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 158 LLWDPK--VLILDEPTSGLDSFTALNLVS--------TLSQLA--RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHhCCC--EEEEeCCCcCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 999999 999999 99999999987777 787775 34789999999973 22 4556667654
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.4e-25 Score=208.51 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=130.3
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++.+.|+ +...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+. . ....+
T Consensus 10 ~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------~-~~~~i 80 (272)
T PRK15056 10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA--------L-QKNLV 80 (272)
T ss_pred EeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh--------h-ccceE
Confidence 35556664 34568999999999999999999999999999999999999999999977654210 0 00111
Q ss_pred ceeEecccccc--HHHHHHHHHH--------------hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 227 EIVVAEGEKAK--ASSVLSQAVK--------------RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 227 ~~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
.+ +.+.+... ....+.+.+. ......... +++.+|+.+..++.+.+||+|++ .||||++
T Consensus 81 ~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 81 AY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTA-ALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred EE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHH-HHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11 22221100 0000111100 000112223 34678888778889999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+|+|+..+..+.+ +|.++. .+|.+||++||+++.. +.++ +|+.+.
T Consensus 159 ~~p~--llllDEPt~~LD~~~~~~l~~--------~L~~~~--~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 159 QQGQ--VILLDEPFTGVDVKTEARIIS--------LLRELR--DEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred cCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 9999 999999 99999999988877 888875 4588999999998653 4344 677653
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=1.6e-24 Score=224.30 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=136.3
Q ss_pred HHHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHH
Q 017380 148 NSVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLE 218 (372)
Q Consensus 148 ~~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~ 218 (372)
+++.+.|+. ..+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+...... ....
T Consensus 9 ~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-~~~~ 87 (529)
T PRK15134 9 ENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE-QTLR 87 (529)
T ss_pred eceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH-HHHH
Confidence 355666752 3578999999999999999999999999999999999986 68999998776532211 1111
Q ss_pred HHHHhhCcceeEecccc--ccHHHHHHHHHH----h--h-----hhhchHHHHHHhhCCCc---cchhhHhHHHHHHH--
Q 017380 219 IWAERTGCEIVVAEGEK--AKASSVLSQAVK----R--G-----KEQGFDIVLCDTSGRLH---TNYSLMEELVACKK-- 280 (372)
Q Consensus 219 ~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~----~--~-----~~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r-- 280 (372)
.+. ...+.+ +.+.+. ..+...+.+.+. . . ....++.+ ++.+|+.+ ..++++.+||+||+
T Consensus 88 ~~~-~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 88 GVR-GNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNC-LDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHh-cCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 111 112333 444331 122122221111 0 0 01223333 46778865 34788999999999
Q ss_pred -HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccC
Q 017380 281 -AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVG 352 (372)
Q Consensus 281 -~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~G 352 (372)
+||||++.+|+ +|+||| |++||+..+..+++ ++.++.. ..|.+||++||+++.. +.++.+|
T Consensus 165 v~iAraL~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~l~~-~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 165 VMIAMALLTRPE--LLIADEPTTALDVSVQAQILQ--------LLRELQQ-ELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred HHHHHHHhcCCC--EEEEcCCCCccCHHHHHHHHH--------HHHHHHH-hcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 99999999999 999999 99999999988887 8888852 3488999999998764 5667788
Q ss_pred cccC
Q 017380 353 EGVE 356 (372)
Q Consensus 353 e~v~ 356 (372)
+.+.
T Consensus 234 ~i~~ 237 (529)
T PRK15134 234 RCVE 237 (529)
T ss_pred EEEE
Confidence 7663
No 228
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=1.7e-24 Score=203.42 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=130.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh--hhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR--LKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~--l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|+....++++||++.+|++++|+|+||||||||+++|+|+ ++|++|+|.+.+.+..+.... .+ ...+
T Consensus 11 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~----~~-~~~~ 85 (252)
T CHL00131 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE----ER-AHLG 85 (252)
T ss_pred EeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh----hh-heee
Confidence 3556666655678999999999999999999999999999999998 578999999977664332111 11 1112
Q ss_pred cceeEeccccccHHHHHHHHHHhh-------------h----hhchHHHHHHhhCCC-ccchhhHh-HHHHHHH---HHH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG-------------K----EQGFDIVLCDTSGRL-HTNYSLME-ELVACKK---AVG 283 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~d~vl~dt~G~~-~~~~~~~~-eLS~G~r---~iA 283 (372)
+.+ +.+.....+.....+.+... . ...+..+ ++.+|+. +..++.+. +||+||+ .||
T Consensus 86 ~~~-~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 86 IFL-AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK-LKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred EEE-EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHH-HHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 222 22322211111111111000 0 0112223 3567776 34566676 5999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v 355 (372)
++++.+|+ +|+||| |+|+|+..+..+.. +|.++. .+|.+||++||+.... +..+..|+.+
T Consensus 164 ~al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 164 QMALLDSE--LAILDETDSGLDIDALKIIAE--------GINKLM--TSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred HHHHcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 99999999 999999 99999999988877 787775 4588999999988732 4456788876
Q ss_pred CC
Q 017380 356 ED 357 (372)
Q Consensus 356 ~D 357 (372)
.+
T Consensus 232 ~~ 233 (252)
T CHL00131 232 KT 233 (252)
T ss_pred Ee
Confidence 43
No 229
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=202.55 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=131.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++...|++...++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+....... ...+...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~--~~~~~~~ 87 (251)
T PRK14244 10 NLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN--VVLLRAK 87 (251)
T ss_pred eEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc--hHHHhhh
Confidence 45556665567899999999999999999999999999999999986 4689999977654221100 0111222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAr 284 (372)
+.+ +.+.....+. .+.+.+... ....+.. +++.+|+.+ ..++.+.+||+||+ +|||
T Consensus 88 --i~~-v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 88 --VGM-VFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEK-SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred --EEE-EecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 222 4444333322 222222111 0011222 346778754 34567899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.+ +|.++. ++.++|++||++... +..+.+|+.+.
T Consensus 163 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~---~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 163 AIAVKPT--MLLMDEPCSALDPVATNVIEN--------LIQELK---KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred HHhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh---cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999 999999 99999999977776 788774 378999999999764 55677888763
No 230
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.4e-24 Score=204.95 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=130.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.+.+..+... . ...+..
T Consensus 8 ~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~-~-~~~~~~ 85 (258)
T PRK14241 8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV-D-PVAVRR 85 (258)
T ss_pred eeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc-C-hHHHhc
Confidence 4566677665678999999999999999999999999999999999974 69999998766532100 0 011222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+...+++.+... ..+.+.. +++.+|+. +..++.+.+||+||+ +|||
T Consensus 86 --~i~~-~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 86 --TIGM-VFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK-SLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred --ceEE-EccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2222 33332222211122222110 0011122 33566763 355778899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec------c
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG------V 351 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~------~ 351 (372)
|++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||++... +.++. +
T Consensus 162 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~ 228 (258)
T PRK14241 162 AIAVEPD--VLLMDEPCSALDPISTLAIED--------LINELK--Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKP 228 (258)
T ss_pred HHhcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCC
Confidence 9999999 999999 99999999988777 788774 2 57999999999764 44454 6
Q ss_pred CcccC
Q 017380 352 GEGVE 356 (372)
Q Consensus 352 Ge~v~ 356 (372)
|+.+.
T Consensus 229 g~i~~ 233 (258)
T PRK14241 229 GRLVE 233 (258)
T ss_pred ceEEe
Confidence 77763
No 231
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=203.18 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=130.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|++...++++||++++|++++|+||||||||||+++|+|++++ ++|+|.+.+.+..+.. .. ...+..
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~-~~-~~~~~~- 84 (250)
T PRK14240 8 DLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD-ID-VNQLRK- 84 (250)
T ss_pred EEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-cc-hHHHhc-
Confidence 455566655678999999999999999999999999999999999763 6899999876653210 00 111112
Q ss_pred hCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
.+.+ +.+.....+ ..+.+.+.... .+.... +++.+++. +..++.+.+||+||+ +|||+
T Consensus 85 -~i~~-~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 85 -RVGM-VFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEK-SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred -cEEE-EecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2222 334333222 12222221110 111222 23456653 334677899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||+++.. +.++.+|+.+.
T Consensus 161 l~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 161 LAVEPE--VLLMDEPTSALDPISTLKIEE--------LIQELK--K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred HhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 999999 999999 99999999988777 788874 3 67999999999853 56778888764
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=7.2e-25 Score=206.50 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=130.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh----cCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN----EGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~----~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.| ....++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.+.... ..+..
T Consensus 9 ~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~------~~~~~-- 79 (254)
T PRK10418 9 NIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC------ALRGR-- 79 (254)
T ss_pred CeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc------ccccc--
Confidence 445555 34568899999999999999999999999999999999999 899999977654211 00111
Q ss_pred CcceeEecccc--ccHHHHHHHHH----Hh-h---hhhchHHHHHHhhCCCc---cchhhHhHHHHHHH---HHHHHHhC
Q 017380 225 GCEIVVAEGEK--AKASSVLSQAV----KR-G---KEQGFDIVLCDTSGRLH---TNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 225 ~v~~~~~~~~~--~~~~~~~~~~~----~~-~---~~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r---~iAral~~ 288 (372)
.+.+ +.+... ..+...+.+.. .. . ....+.. +++.+|+.+ ..++.+.+||+||+ .||||++.
T Consensus 80 ~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 80 KIAT-IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA-ALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred eEEE-EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHH-HHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 1222 333321 11111111111 00 0 0112232 346778865 35778899999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|+|+..+..++. ++.++.. ..|.+||++||++... +.++.+|+.+.
T Consensus 158 ~p~--lLlLDEPt~~LD~~~~~~l~~--------~L~~~~~-~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 158 EAP--FIIADEPTTDLDVVAQARILD--------LLESIVQ-KRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred CCC--EEEEeCCCcccCHHHHHHHHH--------HHHHHHH-hcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999 999999 99999999977777 7777742 3478999999998753 55677887764
No 233
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=202.55 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=132.0
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++...|+....++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.+..... .....+..
T Consensus 8 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~--~~~~~~~~ 85 (251)
T PRK14251 8 KDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK--MDLVELRK 85 (251)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc--chHHHhhc
Confidence 355666766567899999999999999999999999999999999997 47999999876643210 01111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
++.+ +.+.....+. .+.+.+... ....+.. +++.+|+. ...++.+.+||+||+ +|||
T Consensus 86 --~i~~-~~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 86 --EVGM-VFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEE-SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred --cEEE-EecCCccCCC-cHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 2222 3333322221 222222110 0111222 33566763 334678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|++.+|+ +|+||| |+|+|+..+..++. ++.++. . +.++|++||++... +.++.+|+.++
T Consensus 161 al~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 161 ALAVRPK--VVLLDEPTSALDPISSSEIEE--------TLMELK--H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred HHhcCCC--EEEecCCCccCCHHHHHHHHH--------HHHHHH--c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999 999999 99999999977777 788774 2 58999999999863 45677887663
No 234
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=1.7e-24 Score=192.48 Aligned_cols=139 Identities=14% Similarity=0.240 Sum_probs=106.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++++|++++|+||||+|||||++.|+|+++|++|+|.+.+.+...... ..+... +.+ +.+.+...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~--i~~-~~q~~~~~ 88 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP----NELGDH--VGY-LPQDDELF 88 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH----HHHHhh--eEE-ECCCCccc
Confidence 46889999999999999999999999999999999999999999997765432211 112222 222 33332211
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
+. .+. |.. ||+||+ .|||+++.+|+ +|+||| |+|+|+..+..++.
T Consensus 89 ~~-tv~----------------~~l------------LS~G~~qrv~la~al~~~p~--~lllDEPt~~LD~~~~~~l~~ 137 (173)
T cd03246 89 SG-SIA----------------ENI------------LSGGQRQRLGLARALYGNPR--ILVLDEPNSHLDVEGERALNQ 137 (173)
T ss_pred cC-cHH----------------HHC------------cCHHHHHHHHHHHHHhcCCC--EEEEECCccccCHHHHHHHHH
Confidence 11 111 110 999999 99999999999 999999 99999999988887
Q ss_pred hhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 314 DVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 314 ~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
++.++. .+|.++|++||+...
T Consensus 138 --------~l~~~~--~~~~tii~~sh~~~~ 158 (173)
T cd03246 138 --------AIAALK--AAGATRIVIAHRPET 158 (173)
T ss_pred --------HHHHHH--hCCCEEEEEeCCHHH
Confidence 888775 358899999999875
No 235
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=1.5e-24 Score=191.20 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=112.5
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|++...+++++|++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+....... ..+.. .+.+
T Consensus 6 l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~---~~~~~--~i~~- 79 (163)
T cd03216 6 ITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR---DARRA--GIAM- 79 (163)
T ss_pred EEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH---HHHhc--CeEE-
Confidence 34456555578899999999999999999999999999999999999999999976554221110 00111 1111
Q ss_pred EeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 230 VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
+.+ ||+||+ .+||+++.+|+ +|+||| |+++|+
T Consensus 80 ~~q------------------------------------------LS~G~~qrl~laral~~~p~--illlDEP~~~LD~ 115 (163)
T cd03216 80 VYQ------------------------------------------LSVGERQMVEIARALARNAR--LLILDEPTAALTP 115 (163)
T ss_pred EEe------------------------------------------cCHHHHHHHHHHHHHhcCCC--EEEEECCCcCCCH
Confidence 111 999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
..+..+.. ++.++. .++.++|++||+.... +.++.+|+.+
T Consensus 116 ~~~~~l~~--------~l~~~~--~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 116 AEVERLFK--------VIRRLR--AQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHH--------HHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99988877 787775 4588999999998742 4555666543
No 236
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=217.09 Aligned_cols=190 Identities=14% Similarity=0.202 Sum_probs=135.0
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc---cc
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE---KA 236 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~---~~ 236 (372)
++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+ .+. .++.+ +.+.. ..
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~---~~~--~~i~~-v~q~~~~~~~ 341 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD---GLA--NGIVY-ISEDRKRDGL 341 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH---HHH--CCCEE-ecCccccCCC
Confidence 68999999999999999999999999999999999999999999776643211111 111 12322 33332 11
Q ss_pred cHHHHHHHHHHh----------------hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 237 KASSVLSQAVKR----------------GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 237 ~~~~~~~~~~~~----------------~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
.+...+.+.+.. .....++. +++.+|+. +..++++.+||+||+ .||++++.+|+ +|+
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~--lll 418 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSD-FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK--VLI 418 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHH-HHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCC--EEE
Confidence 111111111100 00112333 34678884 567899999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCCCCCHHHHH
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQPFDAEAFV 367 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~~~~~~~~v 367 (372)
||| |+|||+..+..+.+ +|.++. .+|.+||++||+++.. +.++.+|+.+. ........+++
T Consensus 419 LDEPt~~LD~~~~~~l~~--------~l~~~~--~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 488 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQ--------LINQFK--AEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488 (501)
T ss_pred EcCCCCCCCHhHHHHHHH--------HHHHHH--HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCCHHHHH
Confidence 999 99999999988887 888886 4588999999998875 66788898763 34444444554
Q ss_pred H
Q 017380 368 N 368 (372)
Q Consensus 368 ~ 368 (372)
.
T Consensus 489 ~ 489 (501)
T PRK10762 489 A 489 (501)
T ss_pred H
Confidence 4
No 237
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=2.5e-24 Score=192.17 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=107.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++++|++++|+||||+|||||++.|+|+++|++|+|.+.+.+.... ...+... +.+ +.+.+...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~--i~~-~~q~~~~~ 87 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-----EKALSSL--ISV-LNQRPYLF 87 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----HHHHHhh--EEE-EccCCeee
Confidence 468899999999999999999999999999999999999999999977654211 1112222 222 33332211
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
+. .+.+. .+.+||+||+ .|||+++.+|+ +|+||| |+++|+..+..+++
T Consensus 88 ~~-tv~~~-------------------------i~~~LS~G~~qrv~laral~~~p~--~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 88 DT-TLRNN-------------------------LGRRFSGGERQRLALARILLQDAP--IVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred cc-cHHHh-------------------------hcccCCHHHHHHHHHHHHHhcCCC--EEEEECCcccCCHHHHHHHHH
Confidence 11 11110 0678999999 99999999999 999999 99999999977777
Q ss_pred hhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 314 DVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 314 ~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++.++. ++.++|++||+....
T Consensus 140 --------~l~~~~---~~~tii~~sh~~~~~ 160 (178)
T cd03247 140 --------LIFEVL---KDKTLIWITHHLTGI 160 (178)
T ss_pred --------HHHHHc---CCCEEEEEecCHHHH
Confidence 777774 378999999998764
No 238
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.3e-24 Score=218.10 Aligned_cols=191 Identities=14% Similarity=0.221 Sum_probs=135.0
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc---
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK--- 235 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~--- 235 (372)
.++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+.. +..+.+ +.+.+.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~-----~~~i~~-~~q~~~~~~ 341 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI-----RAGIML-CPEDRKAEG 341 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH-----hCCCEE-cCcCHhhCC
Confidence 46899999999999999999999999999999999999999999976554211111111 111211 222210
Q ss_pred ccHHHHHHHHHH---------------h-hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 236 AKASSVLSQAVK---------------R-GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 236 ~~~~~~~~~~~~---------------~-~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
..+...+.+.+. . .....+.. +++.+|+. +..++++.+||+||| .||++++.+|+ +|
T Consensus 342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~--ll 418 (501)
T PRK11288 342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADR-FIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMK--VI 418 (501)
T ss_pred CcCCCCHHHHhccccchhhcccccccChHHHHHHHHH-HHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCC--EE
Confidence 111111111110 0 00112333 34677884 567899999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCCCCCHHHH
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQPFDAEAF 366 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~~~~~~~~ 366 (372)
+||| |+|+|+..+.++++ +|.++. ..|++||++|||++.. +.++..|+.+. +...+...++
T Consensus 419 lLDEPt~~LD~~~~~~l~~--------~l~~l~--~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 488 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYN--------VIYELA--AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488 (501)
T ss_pred EEcCCCCCCCHhHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCCHHHH
Confidence 9999 99999999988887 888886 4589999999998865 55678888773 4556666666
Q ss_pred HH
Q 017380 367 VN 368 (372)
Q Consensus 367 v~ 368 (372)
+.
T Consensus 489 ~~ 490 (501)
T PRK11288 489 LS 490 (501)
T ss_pred HH
Confidence 54
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.6e-24 Score=198.30 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=126.4
Q ss_pred HHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 150 VLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 150 l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+...|+. ...++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..... ...+... +.+
T Consensus 8 l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~--i~~ 81 (229)
T cd03254 8 VNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS----RKSLRSM--IGV 81 (229)
T ss_pred EEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC----HHHHhhh--EEE
Confidence 3445543 34789999999999999999999999999999999999999999999765542211 0111122 222
Q ss_pred eEeccccccHHHHHHHHHHhhhh----hchHHHHHHhh-----------CCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTS-----------GRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~-----------G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+.+...+. .+.+.+..... ......+ +.. |+....++.+.+||+||+ .||++++.+|
T Consensus 82 -~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 -VLQDTFLFSG-TIMENIRLGRPNATDEEVIEAA-KEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred -ecCCchhhhh-HHHHHHhccCCCCCHHHHHHHH-HHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 3333322222 23333321100 1111111 122 333334456789999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+ +|+||| |+|||+..+..+++ ++.++. ++.+||++||+.... +..+.+|+.+.
T Consensus 159 ~--llllDEP~~~LD~~~~~~l~~--------~l~~~~---~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 159 K--ILILDEATSNIDTETEKLIQE--------ALEKLM---KGRTSIIIAHRLSTIKNADKILVLDDGKIIE 217 (229)
T ss_pred C--EEEEeCccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEecCHHHHhhCCEEEEEeCCeEEE
Confidence 9 999999 99999999988777 777774 378999999999763 55667777653
No 240
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-24 Score=203.83 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=132.3
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee------ccccchhhhhHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA------GDTFRAAASDQLEIW 220 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~------~d~~r~~a~eql~~~ 220 (372)
.+++.+.|++...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.| .+..+.. ...+
T Consensus 13 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~----~~~~ 88 (257)
T PRK14246 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID----AIKL 88 (257)
T ss_pred eeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC----HHHH
Confidence 35777788877789999999999999999999999999999999999999987776644 2221111 1111
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhh------h-hh---chHHHHHHhhCCC----ccchhhHhHHHHHHH---HHH
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRG------K-EQ---GFDIVLCDTSGRL----HTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~-~~---~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iA 283 (372)
.. .+.+ +.+.+...+...+++.+... . .. .....+.+.+|+. +..+..+.+||+|++ +||
T Consensus 89 ~~--~i~~-~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 89 RK--EVGM-VFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred hc--ceEE-EccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 12 2222 33333322221222222211 0 00 1112233566774 345678899999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+++.+|+ +++||| |+|+|+..+..+.. ++.++. . +.++|++||+.+.. +..+..|+.+
T Consensus 166 ral~~~P~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 166 RALALKPK--VLLMDEPTSMIDIVNSQAIEK--------LITELK--N-EIAIVIVSHNPQQVARVADYVAFLYNGELV 231 (257)
T ss_pred HHHHcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999 99999999977777 888774 2 58999999998864 5566778765
No 241
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-24 Score=203.47 Aligned_cols=190 Identities=15% Similarity=0.205 Sum_probs=131.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--h---cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--N---EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~---~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.+.+.+..+.. .+ ...+..
T Consensus 9 nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-~~-~~~~~~- 85 (252)
T PRK14256 9 QLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG-VD-PVSIRR- 85 (252)
T ss_pred EEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc-CC-hHHhhc-
Confidence 45566665567899999999999999999999999999999999986 4 5899999876653211 01 111112
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-------hh---hchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-------KE---QGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAral 286 (372)
.+.+ +.+.....+...+.+.+... .. ......+++.+|+.. ..+..+.+||+||+ +|||++
T Consensus 86 -~i~~-~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 86 -RVGM-VFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred -cEEE-EecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 2222 33433333222222222110 00 111122335667643 34567889999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.+||++||++... +.++.+|+.++
T Consensus 164 ~~~p~--llllDEP~~gLD~~~~~~l~~--------~l~~~~--~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 164 AVKPE--VILMDEPASALDPISTLKIEE--------LIEELK--E-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred hcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHH--h-CCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 99999 999999 99999999988877 888885 2 57999999998764 45677887663
No 242
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=2.2e-23 Score=179.41 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=161.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec--cccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG--DTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~--d~~r~~a~eql~~~~~~~~ 225 (372)
+++...||...++-|++|+-+.|+.+.++||+|+||||+++.|.-+..|.+|+..|.+. |..+...-.+...+.+..|
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 46778899999999999999999999999999999999999999888899999999654 3333334455666666666
Q ss_pred cceeEeccccccHHHHHHHHHHhh--------h--hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG--------K--EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
+ +++.+..-|...+.+.+-.+ + ......-++.+..+.++.++.+-.||||++ +|||||+..|.
T Consensus 86 m---vfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq- 161 (242)
T COG4161 86 M---VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ- 161 (242)
T ss_pred h---hhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc-
Confidence 5 45555555544444333221 1 111122344688888999999999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCC---C
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQ---P 360 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~---~ 360 (372)
+|+.|| |+.+||.-..++.. |+.++.+ .|.|-++++|+.+++ +.|+.+|..|+ |-. .
T Consensus 162 -vllfdeptaaldpeitaqvv~--------iikel~~--tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 162 -VLLFDEPTAALDPEITAQIVS--------IIKELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred -EEeecCcccccCHHHHHHHHH--------HHHHHHh--cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 999999 99999999989998 9999984 589999999999986 77999999984 433 3
Q ss_pred CCHHHHHHHh
Q 017380 361 FDAEAFVNAI 370 (372)
Q Consensus 361 ~~~~~~v~~l 370 (372)
..-+.|.+.|
T Consensus 231 p~te~f~~yl 240 (242)
T COG4161 231 PQTEAFKNYL 240 (242)
T ss_pred ccHHHHHHHh
Confidence 3455666554
No 243
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-24 Score=202.62 Aligned_cols=188 Identities=14% Similarity=0.198 Sum_probs=132.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-----CCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-----GAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-----~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++.+|++++|+||||+|||||++.|+|+++|+ +|+|.+.+.+...... ....+...
T Consensus 9 ~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~--~~~~~~~~ 86 (251)
T PRK14249 9 GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL--DVVNLRKR 86 (251)
T ss_pred EEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc--ChHHhhce
Confidence 4555666556789999999999999999999999999999999999986 5999997766532110 11122222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
+.+ +.+.....+. .+.+.+.... .+.++. +.+.+|+. +..++.+.+||+||+ +|||+
T Consensus 87 --i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 87 --VGM-VFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred --EEE-EecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHH-HHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 222 4444333332 2222221110 011222 22455653 345678899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. ++.+||++||++... +.++.+|+.+.
T Consensus 162 l~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~---~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 162 LAIEPE--VILMDEPCSALDPVSTMRIEE--------LMQELK---QNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred HhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh---cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 999999 999999 99999999987776 777774 378999999998763 66788888764
No 244
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.8e-24 Score=202.97 Aligned_cols=189 Identities=16% Similarity=0.205 Sum_probs=132.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--h---cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--N---EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~---~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.+.+.+..... .. ...+..
T Consensus 16 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~-~~-~~~~~~ 93 (259)
T PRK14274 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK-VD-LVELRK 93 (259)
T ss_pred eeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc-cC-HHHHhh
Confidence 466677776667899999999999999999999999999999999987 3 5899999876643210 01 111112
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+. .+++.+.... ...++. +++.+|+. +..+..+.+||+||+ .|||
T Consensus 94 --~i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 94 --NIGM-VFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEK-SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred --ceEE-EecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHH-HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 2222 3333322222 2222221100 011222 23456764 235678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.+ +|.++. . +.++|++||++... +.++.+|+.++
T Consensus 169 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 169 ALATNPD--VLLMDEPTSALDPVSTRKIEE--------LILKLK--E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred HHhcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999987777 888875 3 68999999998753 55778888764
No 245
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-24 Score=202.40 Aligned_cols=188 Identities=15% Similarity=0.201 Sum_probs=130.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh---hhh--cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR---LKN--EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~---l~~--~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|+ ++| ++|+|.+.+.+..+... ....+..
T Consensus 8 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~- 84 (250)
T PRK14245 8 DVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV--QVDELRK- 84 (250)
T ss_pred EEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--cHHHHhh-
Confidence 445556655578899999999999999999999999999999997 344 48999998776533110 0111222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAra 285 (372)
++.+ +.+.....+. .+.+.+... ....++. +++.+|+.+ ..+..+.+||+||+ +|||+
T Consensus 85 -~i~~-v~q~~~~~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 85 -NVGM-VFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEE-TLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred -heEE-EecCCccCcc-cHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2222 3333222221 222222110 0111233 336677743 45678899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. ++.+||++||++... +.++.+|+.++
T Consensus 161 l~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~---~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 161 MAVSPS--VLLMDEPASALDPISTAKVEE--------LIHELK---KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred HhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999 999999 99999999988877 888874 268999999999864 55777887763
No 246
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=2.5e-24 Score=222.49 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=134.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--hhcCCeEEEee---------------------
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--KNEGAKILMAA--------------------- 205 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--~~~~G~V~l~~--------------------- 205 (372)
++.+.|++...++++||++.+|++++|+||||||||||++.|+|++ +|++|+|.+.+
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (520)
T TIGR03269 5 NLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPV 84 (520)
T ss_pred EEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccc
Confidence 4556676656789999999999999999999999999999999997 68999999862
Q ss_pred -ccccc-----h-h-hhhHHHHHHHhhCcceeEecc-ccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCc
Q 017380 206 -GDTFR-----A-A-ASDQLEIWAERTGCEIVVAEG-EKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLH 266 (372)
Q Consensus 206 -~d~~r-----~-~-a~eql~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~ 266 (372)
+.... . . ...+...+... +.+ +.+. ....+...+++.+... ....+..+ ++.+|+.+
T Consensus 85 ~g~~~~~~~~~~~~~~~~~~~~~~~~--i~~-v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~ 160 (520)
T TIGR03269 85 CGGTLEPEEVDFWNLSDKLRRRIRKR--IAI-MLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL-IEMVQLSH 160 (520)
T ss_pred ccccccccchhhhccCHHHHHHhhhc--EEE-EeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHcCChh
Confidence 11000 0 0 00111122222 222 3332 1111111112211110 01123333 46789987
Q ss_pred cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 267 TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 267 ~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
..++.+.+||+||+ +||||++.+|+ +|+||| |++||+..+..+++ +|.++.. ..|.+||++|||+
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~l~~-~~g~tviivtHd~ 229 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPF--LFLADEPTGTLDPQTAKLVHN--------ALEEAVK-ASGISMVLTSHWP 229 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCC--EEEeeCCcccCCHHHHHHHHH--------HHHHHHH-hcCcEEEEEeCCH
Confidence 77889999999999 99999999999 999999 99999999988887 8888752 3488999999998
Q ss_pred CCc------eeeeccCcccC
Q 017380 343 GIP------VKFVGVGEGVE 356 (372)
Q Consensus 343 ~~p------i~~i~~Ge~v~ 356 (372)
+.. +.++.+|+.+.
T Consensus 230 ~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 230 EVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHhcCEEEEEeCCEEee
Confidence 864 55677887653
No 247
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-24 Score=205.06 Aligned_cols=178 Identities=11% Similarity=0.121 Sum_probs=126.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..... . ....+..
T Consensus 17 ~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~-~-~~~~~~~ 94 (269)
T PRK14259 17 QNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR-V-DPVEVRR 94 (269)
T ss_pred EeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-C-CHHHHhh
Confidence 567777776667899999999999999999999999999999999987 58999999776642110 0 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh---------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK---------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAral 286 (372)
.+.+ +.+.....+. .+.+.+.... .+.... +++.+++. +..++.+.+||+||+ +||||+
T Consensus 95 --~i~~-v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 95 --RIGM-VFQQPNPFPK-SIYENIAFGARINGYTGDMDELVER-SLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred --ceEE-EccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHH-HHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 2322 4444333332 3333332110 011122 23555653 345778899999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+.+|+ +|+||| |+|||+..+..++. +|.++. . +.+||++||+++..
T Consensus 170 ~~~p~--lllLDEPt~gLD~~~~~~l~~--------~l~~~~--~-~~tiiivtH~~~~~ 216 (269)
T PRK14259 170 AIEPE--VILMDEPCSALDPISTLKIEE--------TMHELK--K-NFTIVIVTHNMQQA 216 (269)
T ss_pred hcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHH
Confidence 99999 999999 99999999988877 888775 2 58999999999765
No 248
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=5.5e-24 Score=190.72 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=106.8
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc---c
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE---K 235 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~---~ 235 (372)
.++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+....+ .+.. .+.+ +.+.. .
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~---~~~~--~i~~-~~q~~~~~~ 88 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD---AIRA--GIAY-VPEDRKREG 88 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHH---HHhC--CeEE-ecCCcccCc
Confidence 578999999999999999999999999999999999999999999876653321111 1111 2222 33331 1
Q ss_pred ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 236 AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
..+...+.+.+... . .||+||+ +||||++.+|+ +|+||| |+|+|+..+..+
T Consensus 89 ~~~~~t~~e~l~~~--------------~---------~LS~G~~qrl~la~al~~~p~--llllDEP~~~LD~~~~~~l 143 (182)
T cd03215 89 LVLDLSVAENIALS--------------S---------LLSGGNQQKVVLARWLARDPR--VLILDEPTRGVDVGAKAEI 143 (182)
T ss_pred ccCCCcHHHHHHHH--------------h---------hcCHHHHHHHHHHHHHccCCC--EEEECCCCcCCCHHHHHHH
Confidence 11111122211110 0 0999999 99999999999 999999 999999999888
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
.+ ++.++. .++.++|+++|++..
T Consensus 144 ~~--------~l~~~~--~~~~tiii~sh~~~~ 166 (182)
T cd03215 144 YR--------LIRELA--DAGKAVLLISSELDE 166 (182)
T ss_pred HH--------HHHHHH--HCCCEEEEEeCCHHH
Confidence 77 888875 347899999999864
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-24 Score=201.88 Aligned_cols=188 Identities=14% Similarity=0.219 Sum_probs=132.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|+....++++||++.+|++++|+|+||+|||||+++|+|+++| ++|+|.+.+.+..+... . ...+...
T Consensus 9 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~-~-~~~~~~~ 86 (251)
T PRK14270 9 NLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV-D-VVELRKR 86 (251)
T ss_pred EeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc-c-HHHHHhh
Confidence 455566655678999999999999999999999999999999999875 78999998776532110 0 1111222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh----------h-hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG----------K-EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
.+ + +.+.....+ ..+.+.+... . ...+.. +++.+|+. +..+..+.+||+||+ +|||+
T Consensus 87 i~--~-~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 87 VG--M-VFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEW-ALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred eE--E-EecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHH-HHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 22 2 333332222 1222222110 0 011222 34677763 345678899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||+++.. +..+.+|+.+.
T Consensus 162 l~~~p~--llllDEP~~~LD~~~~~~l~~--------~L~~~~--~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 162 IAVKPD--VILMDEPTSALDPISTLKIED--------LMVELK--K-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred HhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHH--h-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 999999 999999 99999999988777 788775 2 57999999999863 66788888763
No 250
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.2e-24 Score=199.95 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=131.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++.+.|++...++++||++++|++++|+||||+|||||+++|+|+++| ++|+|.+.+.+..+.. . ....+...
T Consensus 8 ~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~-~-~~~~~~~~ 85 (250)
T PRK14262 8 NFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ-L-DVTEYRKK 85 (250)
T ss_pred eeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch-h-hHHHhhhh
Confidence 455566655678999999999999999999999999999999999874 7899999876653211 0 11112222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAra 285 (372)
+.+ +.+.+...+ ..+++.+.... .+.+.. +.+.+|+.+ ..++.+.+||+||+ +||||
T Consensus 86 --i~~-~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 86 --VGM-VFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEE-SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred --EEE-EecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 222 344333222 22222222100 011122 235566642 35778899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++.+|+ +|+||| |+|+|+..+..+.+ ++.++. . +.++|++||+.... +..+.+|+.+
T Consensus 161 l~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 161 LAVEPE--VILLDEPTSALDPIATQRIEK--------LLEELS--E-NYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred HhCCCC--EEEEeCCccccCHHHHHHHHH--------HHHHHh--c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 999999 99999999988777 888774 2 57999999998743 5567788776
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=3.3e-24 Score=197.49 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=125.2
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+. ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ...+....+
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~- 81 (221)
T cd03244 7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG----LHDLRSRIS- 81 (221)
T ss_pred EEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC----HHHHhhhEE-
Confidence 34445542 24789999999999999999999999999999999999999999999776542211 111222222
Q ss_pred ceeEeccccccHHHHHHHHHHhh---hhhchHHHHHHhhCC-----------CccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG---KEQGFDIVLCDTSGR-----------LHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vl~dt~G~-----------~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+ +.+.+...+. .+.+.+... ........ .+.+|+ ....+..+.+||+||+ .|||+++.+
T Consensus 82 -~-~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 82 -I-IPQDPVLFSG-TIRSNLDPFGEYSDEELWQA-LERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred -E-ECCCCccccc-hHHHHhCcCCCCCHHHHHHH-HHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 2 3333322221 222222110 00111111 122333 2223457889999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
|+ +|+||| |+|+|+..+..++. ++.++. ++.++|++||+.... +..+.+|+.+
T Consensus 158 p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~---~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 158 SK--ILVLDEATASVDPETDALIQK--------TIREAF---KDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred CC--EEEEeCccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 99 999999 99999999987777 787774 358999999998764 4455666655
No 252
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-24 Score=206.28 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=133.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+... . ...+..
T Consensus 43 ~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~-~-~~~~~~ 120 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV-D-PVALRR 120 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc-c-hHhhhc
Confidence 567777776667899999999999999999999999999999999987 589999997766432110 0 111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh---------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG---------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAral 286 (372)
. +.+ +.+.....+. .+.+.+... ....+.. +++.+|+. +..+..+.+||+||+ +|||++
T Consensus 121 ~--i~~-v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 121 R--IGM-VFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEE-SLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred c--EEE-EecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHH-HHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 2 222 3343322221 222222110 0112222 33566764 345678899999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------e-eeeccCcccCC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------V-KFVGVGEGVED 357 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i-~~i~~Ge~v~D 357 (372)
+.+|+ +||||| |+|||+..+..+.. +|.++. . +++||++||++... + .++..|+.+.+
T Consensus 196 ~~~p~--lLLLDEPts~LD~~~~~~l~~--------~L~~~~--~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 196 APDPE--VILMDEPASALDPVATSKIED--------LIEELA--E-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HcCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99999 999999 99999999987777 888875 2 37999999998763 2 24578887643
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.9e-24 Score=188.65 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=107.9
Q ss_pred HHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 151 LDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 151 ~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
.+.|+.. ..++++||++++|++++|+||||+|||||++.|+|+++|++|+|.+.+.+...... ..+... +.+
T Consensus 7 ~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~--i~~ 80 (171)
T cd03228 7 SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL----ESLRKN--IAY 80 (171)
T ss_pred EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH----HHHHhh--EEE
Confidence 3445443 46889999999999999999999999999999999999999999997765422111 112222 222
Q ss_pred eEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD 304 (372)
+.+.....+. .+. |.. ||+||+ .|||+++.+|+ +|+||| |+|+|
T Consensus 81 -~~~~~~~~~~-t~~----------------e~l------------LS~G~~~rl~la~al~~~p~--llllDEP~~gLD 128 (171)
T cd03228 81 -VPQDPFLFSG-TIR----------------ENI------------LSGGQRQRIAIARALLRDPP--ILILDEATSALD 128 (171)
T ss_pred -EcCCchhccc-hHH----------------HHh------------hCHHHHHHHHHHHHHhcCCC--EEEEECCCcCCC
Confidence 3333211110 000 110 999999 99999999999 999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..+..+.. ++.++. ++.++|++||+.+..
T Consensus 129 ~~~~~~l~~--------~l~~~~---~~~tii~~sh~~~~~ 158 (171)
T cd03228 129 PETEALILE--------ALRALA---KGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHH--------HHHHhc---CCCEEEEEecCHHHH
Confidence 999987777 777774 258999999998764
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.90 E-value=3.3e-24 Score=198.30 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=124.7
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++...|+. ...++++||++.+|++++|+||||+|||||+++|+|+++|++|+|.+.+.+..+... ..+...
T Consensus 15 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~- 89 (226)
T cd03248 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH----KYLHSK- 89 (226)
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH----HHHHhh-
Confidence 345556653 247899999999999999999999999999999999999999999997765422110 111122
Q ss_pred CcceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
+.+ +.+.....+ ..+.+.+... .......+ ++.+ |+.+..+..+.+||+|++ .|||++
T Consensus 90 -i~~-~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 90 -VSL-VGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSF-ISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred -EEE-EecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHH-HHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 222 333332222 1223322210 00112222 2445 666667788999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||++...
T Consensus 166 ~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sh~~~~~ 212 (226)
T cd03248 166 IRNPQ--VLILDEATSALDAESEQQVQQ--------ALYDWP--E-RRTVLVIAHRLSTV 212 (226)
T ss_pred hcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHc--C-CCEEEEEECCHHHH
Confidence 99999 999999 99999999987777 777775 3 58999999998764
No 255
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-24 Score=201.20 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=130.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--h---cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--N---EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~---~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++ | ++|+|.+.+.+...... ....+..
T Consensus 9 ~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~~~ 86 (252)
T PRK14239 9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT--DTVDLRK 86 (252)
T ss_pred EeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc--chHhhhh
Confidence 355666765567899999999999999999999999999999999854 6 48999998766532110 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-------hh----hchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-------KE----QGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+ ..+.+.+... .. ..... +.+.+|+. +..++.+.+||+||+ +|||
T Consensus 87 --~i~~-v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 87 --EIGM-VFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEK-SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred --cEEE-EecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 2222 344333222 1222222210 00 11111 23556653 335678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|++.+|+ +|+||| |+|+|+..+..++. +|.++. . +.++|++||++... +..+.+|+.+.
T Consensus 162 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 162 VLATSPK--IILLDEPTSALDPISAGKIEE--------TLLGLK--D-DYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred HHhcCCC--EEEEcCCccccCHHHHHHHHH--------HHHHHh--h-CCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988877 788774 2 58999999998653 56778887663
No 256
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=6.8e-24 Score=197.66 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=123.1
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+... +.+ +.+.....
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~--i~~-~~q~~~~~ 89 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL----RWLRSQ--IGL-VSQEPVLF 89 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH----HHHHhh--EEE-ECCchhhh
Confidence 46889999999999999999999999999999999999999999997765422111 111112 222 33332222
Q ss_pred HHHHHHHHHHhhh----hh---------chHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 238 ASSVLSQAVKRGK----EQ---------GFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 238 ~~~~~~~~~~~~~----~~---------~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
+ ..+.+.+.... .. .....+ +.. |+....+..+.+||+||+ .||++++.+|+ +|+|||
T Consensus 90 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~--llllDE 165 (238)
T cd03249 90 D-GTIAENIRYGKPDATDEEVEEAAKKANIHDFI-MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK--ILLLDE 165 (238)
T ss_pred h-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHH-HhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC--EEEEeC
Confidence 2 12233322110 00 111111 111 333344566789999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC-----ceeeeccCcccC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI-----PVKFVGVGEGVE 356 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~-----pi~~i~~Ge~v~ 356 (372)
|+|+|+..+..++. +|.++. +|.++|++||++.. -+..+.+|+.+.
T Consensus 166 P~~gLD~~~~~~l~~--------~l~~~~---~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~ 217 (238)
T cd03249 166 ATSALDAESEKLVQE--------ALDRAM---KGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217 (238)
T ss_pred ccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEeCCHHHHhhCCEEEEEECCEEEE
Confidence 99999999987777 777763 47899999999876 356677887664
No 257
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.8e-24 Score=199.08 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=131.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+||||+|||||+++|+|+++| ++|+|.+.+.+...... ...+..
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~~ 83 (249)
T PRK14253 7 ENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID---VADLRI 83 (249)
T ss_pred eccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc---hHHHHh
Confidence 3566667665678999999999999999999999999999999999986 48999997765421100 111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
. +.+ +.+.+...+ ..+.+.+.... .+.+.. ..+.+|+. +..+..+.+||+||+ .|||
T Consensus 84 ~--i~~-~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 84 K--VGM-VFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVER-SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred h--eeE-EecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHH-HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 2 222 333333222 12222221100 011122 23455653 344677889999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.+||++||++... +.++..|+.+.
T Consensus 159 al~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 159 TIAMEPD--VILMDEPTSALDPIATHKIEE--------LMEELK--K-NYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred HHHcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999987777 888875 2 48999999998863 56778888763
No 258
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-24 Score=205.09 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=132.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+.+ |++|+|.+.+.+...... ....+..
T Consensus 43 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~--~~~~~~~ 120 (286)
T PRK14275 43 KNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT--DEVLLRK 120 (286)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc--chHHhhh
Confidence 567777765557899999999999999999999999999999999864 489999997765422100 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
. +.+ +.+.+...+. .+.+.+.... ...... +++.+|+. +..++.+.+||+||+ .|||
T Consensus 121 ~--i~~-v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 121 K--IGM-VFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEK-SLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred c--EEE-ECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHH-HHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 2 222 3343332221 2222222110 011122 23455653 445778899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +||||| |+|+|+..+..++. ++.++. . +.+||++||+.+.. +.++.+|+.+.
T Consensus 196 aL~~~p~--lllLDEPt~gLD~~~~~~l~~--------~L~~~~--~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 196 TLAVEPE--ILLLDEPTSALDPKATAKIED--------LIQELR--G-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999987777 787775 2 47999999998774 55677888763
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=3.9e-24 Score=221.47 Aligned_cols=193 Identities=19% Similarity=0.216 Sum_probs=136.8
Q ss_pred HHHHHHHhc-----------cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhh
Q 017380 147 KNSVLDLLT-----------KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASD 215 (372)
Q Consensus 147 ~~~l~~~~~-----------~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~e 215 (372)
.+++.+.|+ ....++++||++.+|++++|+||||||||||+++|+|+++ ++|+|.+.+.+...... .
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~-~ 355 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNR-R 355 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccch-h
Confidence 356676774 2346899999999999999999999999999999999985 89999998766533211 1
Q ss_pred HHHHHHHhhCcceeEecccc--ccHHHHHHHHHHhh------------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH
Q 017380 216 QLEIWAERTGCEIVVAEGEK--AKASSVLSQAVKRG------------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK 280 (372)
Q Consensus 216 ql~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r 280 (372)
+...+... +.+ +.+... ..+...+.+.+... ....+.. +++.+|+. ...++.+.+||+||+
T Consensus 356 ~~~~~~~~--i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 356 QLLPVRHR--IQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA-VMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred hHHHhhhc--eEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHH-HHHHcCCCHHHHhcCCccCCHHHH
Confidence 11122222 322 334321 11111122221110 0112233 34678886 456889999999999
Q ss_pred ---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec
Q 017380 281 ---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG 350 (372)
Q Consensus 281 ---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~ 350 (372)
+|||+++.+|+ +||||| |+|+|+..+..++. +|.++.. ..|.+||++|||++.. +.++.
T Consensus 432 qrv~la~al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~~-~~~~tvi~vsHd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 432 QRIAIARALILKPS--LIILDEPTSSLDKTVQAQILA--------LLKSLQQ-KHQLAYLFISHDLHVVRALCHQVIVLR 500 (529)
T ss_pred HHHHHHHHHhCCCC--EEEeeCCccccCHHHHHHHHH--------HHHHHHH-hhCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 99999999999 999999 99999999988887 8888752 3478999999999865 56788
Q ss_pred cCcccC
Q 017380 351 VGEGVE 356 (372)
Q Consensus 351 ~Ge~v~ 356 (372)
+|+.++
T Consensus 501 ~G~i~~ 506 (529)
T PRK15134 501 QGEVVE 506 (529)
T ss_pred CCEEEE
Confidence 898763
No 260
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.6e-24 Score=218.67 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhccC---CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHH
Q 017380 144 DALKNSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 144 ~~l~~~l~~~~~~~---~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
.+-.+++...|... .+++|+||+++||+++++|||||+||||.+++|-.+|.|++|+|.++|.|..... ...|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~----~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN----HKYL 540 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC----HHHH
Confidence 33446788888754 4689999999999999999999999999999999999999999999998863332 2334
Q ss_pred HHhhCcceeEeccccccHHHHHHHHH-------------HhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHH
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAV-------------KRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iA 283 (372)
.+.++. +.|++..+...+ .+++ ..++..+.+..+.... |....-..+..+|||||| +||
T Consensus 541 r~~Ig~---V~QEPvLFs~sI-~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 541 RRKIGL---VGQEPVLFSGSI-RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHeee---eeccceeecccH-HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 444444 555555443322 2222 2233344454443222 333334566779999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|||+.+|. +||||| |+.||..++..+-. .+.++ .++.|||+|.|++.-. |.++..|..++
T Consensus 617 RALlr~P~--VLILDEATSALDaeSE~lVq~--------aL~~~---~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 617 RALLRNPR--VLILDEATSALDAESEYLVQE--------ALDRL---MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred HHHhcCCC--EEEEechhhhcchhhHHHHHH--------HHHHh---hcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence 99999999 999999 99999998865555 55554 4569999999999775 77888887664
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=3.6e-24 Score=201.14 Aligned_cols=177 Identities=21% Similarity=0.202 Sum_probs=126.5
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccH
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKA 238 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~ 238 (372)
.++++||++++|++++|+||||||||||+++|+|+++ .+|+|.+.+.+..+....+ +....+ + +.+.....+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~----~~~~i~--~-v~q~~~~~~ 82 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAE----LARHRA--Y-LSQQQTPPF 82 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHH----HhhheE--E-ecccCccCC
Confidence 5789999999999999999999999999999999985 4899999877653322111 111122 1 233221111
Q ss_pred HHHHHHHHHhh---------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC-------CCCceEEEEcC
Q 017380 239 SSVLSQAVKRG---------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG-------APNEILLVLDG 299 (372)
Q Consensus 239 ~~~~~~~~~~~---------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~-------~P~~~lLvLDE 299 (372)
...+.+.+... ....++. +++.+|+.+..++.+.+||+||+ .||++++. +|+ +|+|||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~--llllDE 159 (248)
T PRK03695 83 AMPVFQYLTLHQPDKTRTEAVASALNE-VAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ--LLLLDE 159 (248)
T ss_pred CccHHHHHHhcCccCCCcHHHHHHHHH-HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCC--EEEEcC
Confidence 11122222111 0112233 34677887777889999999999 99999997 568 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+|+|+..+..+.. ++.++. .++.++|++||+++.. +.++.+|+.+.
T Consensus 160 Pt~~LD~~~~~~l~~--------~L~~~~--~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (248)
T PRK03695 160 PMNSLDVAQQAALDR--------LLSELC--QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213 (248)
T ss_pred CcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999987777 888775 4588999999998843 56778888763
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=2.2e-24 Score=202.10 Aligned_cols=190 Identities=18% Similarity=0.109 Sum_probs=126.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--hhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--KNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+....++++||++++|++++|+||||||||||+++|+|++ +|++|+|.+.+.+..+..... . .+.++
T Consensus 6 nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~----~-~~~~i 80 (248)
T PRK09580 6 DLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED----R-AGEGI 80 (248)
T ss_pred EEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH----H-hhcce
Confidence 4455566556789999999999999999999999999999999995 689999999876653321110 0 11122
Q ss_pred ceeEeccccccHH----H---HHHHHHHhh---------hhhchHHHHHHhhCCC-ccchhhHh-HHHHHHH---HHHHH
Q 017380 227 EIVVAEGEKAKAS----S---VLSQAVKRG---------KEQGFDIVLCDTSGRL-HTNYSLME-ELVACKK---AVGKV 285 (372)
Q Consensus 227 ~~~~~~~~~~~~~----~---~~~~~~~~~---------~~~~~d~vl~dt~G~~-~~~~~~~~-eLS~G~r---~iAra 285 (372)
.+ +.+.....+. . .....+... .....-..+++.+++. +..++.+. +||+||+ .||||
T Consensus 81 ~~-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 81 FM-AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred EE-EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 22 2222211110 0 000110000 0011111233556664 33445554 7999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. ..+++||++||+...+ +..+..|+.+.
T Consensus 160 l~~~p~--illLDEPt~~LD~~~~~~l~~--------~l~~l~--~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 160 AVLEPE--LCILDESDSGLDIDALKIVAD--------GVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred HHcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 999999 999999 99999999977776 787775 4578999999987654 33456777653
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.9e-24 Score=198.91 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=125.7
Q ss_pred HHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 151 LDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 151 ~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
...|+ ....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+.. ...+....+ +
T Consensus 7 ~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~----~~~~~~~i~--~- 79 (236)
T cd03253 7 TFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT----LDSLRRAIG--V- 79 (236)
T ss_pred EEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC----HHHHHhhEE--E-
Confidence 34453 344688999999999999999999999999999999999999999999776543211 111112222 2
Q ss_pred EeccccccHHHHHHHHHHhhhh----h---------chHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 230 VAEGEKAKASSVLSQAVKRGKE----Q---------GFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~----~---------~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.....+. .+.+.+..... . .....+ +.. |+....+..+.+||+||+ +|||+++.+|+
T Consensus 80 ~~q~~~~~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAAQIHDKI-MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhcc-hHHHHHhhcCCCCCHHHHHHHHHHcCcHHHH-HhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 3333222221 22332221100 0 111111 111 333334556789999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+||| |+|+|+..+..+.. ++.++. . |.++|++||+.... +.++.+|+.+.
T Consensus 158 --llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 158 --ILLLDEATSALDTHTEREIQA--------ALRDVS--K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHhc--C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 999999 99999999987777 777775 4 78999999999774 55677887653
No 264
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.5e-24 Score=202.57 Aligned_cols=190 Identities=15% Similarity=0.177 Sum_probs=134.9
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++.+.|+....++++||++++|++++|+||||+|||||+++|+|++++ ++|+|.+.+.+..+.. . ....+.
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~-~-~~~~~~ 105 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK-V-DVAELR 105 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc-c-CHHHHh
Confidence 35777777765678999999999999999999999999999999999874 7999999877653311 0 011122
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh-h----------hhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG-K----------EQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVG 283 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iA 283 (372)
. .+.+ +.+.....+. .+++.+... . ...... +.+.+|+.+ ..+..+.+||+||+ +||
T Consensus 106 ~--~i~~-v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 106 R--RVGM-VFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVER-SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred c--cEEE-EecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 2 2222 3443333222 223332211 0 011222 335667642 35677899999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|+++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||+.+.. +..+.+|+.+.
T Consensus 181 ral~~~p~--lllLDEPt~gLD~~~~~~l~~--------~L~~~~--~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 181 RAIAIEPE--VLLLDEPTSALDPISTLKIEE--------LITELK--S-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred HHHHCCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHH--h-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 99999999 999999 99999999977777 888875 3 58999999998763 56678888764
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.6e-23 Score=216.00 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=128.3
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc---c
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE---K 235 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~---~ 235 (372)
.++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+...... + +.++.+ +.+.. .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~---~--~~~i~~-v~q~~~~~~ 351 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR---L--ARGLVY-LPEDRQSSG 351 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH---H--hCCcEE-CCCChhhCC
Confidence 3678999999999999999999999999999999999999999997765432211111 1 112222 22221 0
Q ss_pred ccHHHHHHHHH--------H----hh-hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 236 AKASSVLSQAV--------K----RG-KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 236 ~~~~~~~~~~~--------~----~~-~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
..+...+.+.+ . .. ....++.++ +.+|+. +..++++.+||+||+ .||++++.+|+ +||||
T Consensus 352 l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~--lLlLD 428 (510)
T PRK15439 352 LYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYR-RALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ--LLIVD 428 (510)
T ss_pred ccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHH-HHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC--EEEEC
Confidence 11100011110 0 00 011233333 677886 667889999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
| |+|||+..+..+.. +|.++. .+|.+||++|||++.. +.++.+|+.+.
T Consensus 429 EPt~gLD~~~~~~l~~--------~l~~l~--~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 429 EPTRGVDVSARNDIYQ--------LIRSIA--AQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCCcCcChhHHHHHHH--------HHHHHH--hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 99999999988887 888886 3588999999998775 56778888773
No 266
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.4e-24 Score=196.06 Aligned_cols=193 Identities=21% Similarity=0.188 Sum_probs=137.3
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.+++.-.|++...++|+|+++++|+..+|+||||||||||+++++|.+.|.+|.|.+.|...-+... .....+.+|+
T Consensus 34 l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~---~~elrk~IG~ 110 (257)
T COG1119 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET---IFELRKRIGL 110 (257)
T ss_pred ecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc---hHHHHHHhCc
Confidence 3577778888888999999999999999999999999999999999999999999987653322111 1122222332
Q ss_pred c---------------eeEeccccccHHHHHHH-HHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 227 E---------------IVVAEGEKAKASSVLSQ-AVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 227 ~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
. ..+... .....-.+. .+.. ........+.+.+|..+..+++..+||.|++ .||||++
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg--~~~siG~y~~~~~~-~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv 187 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSG--FFASIGIYQEDLTA-EDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV 187 (257)
T ss_pred cCHHHHhhcccccccceeeeec--ccccccccccCCCH-HHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh
Confidence 0 000000 000000010 0000 1112333456789999999999999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee------eeccCccc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK------FVGVGEGV 355 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~------~i~~Ge~v 355 (372)
.+|. +||||| ++|+|...+....+ .+.++..+..+-++|+|||..+-... .+..|+.+
T Consensus 188 ~~P~--LLiLDEP~~GLDl~~re~ll~--------~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 188 KDPE--LLILDEPAQGLDLIAREQLLN--------RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred cCCC--EEEecCccccCChHHHHHHHH--------HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 9999 999999 99999999988887 78887654557789999998876533 34556554
No 267
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.5e-24 Score=199.95 Aligned_cols=190 Identities=18% Similarity=0.209 Sum_probs=130.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-----CCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-----GAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-----~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++.+|++++|+||||+|||||+++|+|+++|+ +|+|.+.+.+..... .. ...+..
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~-~~-~~~~~~ 85 (252)
T PRK14272 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR-VD-PVAMRR 85 (252)
T ss_pred eeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc-cC-HHHhhc
Confidence 35556676556789999999999999999999999999999999999864 799999776543210 00 111112
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-------hh----hchHHHHHHhhCC----CccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-------KE----QGFDIVLCDTSGR----LHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~d~vl~dt~G~----~~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+...+.+.+... .. +..... +..+++ .+..+..+.+||+||+ +|||
T Consensus 86 --~i~~-~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 86 --RVGM-VFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS-LRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred --eeEE-EeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 2222 34433322221222222110 00 011111 223343 2344677899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||+.... +.++.+|+.+.
T Consensus 162 al~~~p~--llllDEP~~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 162 ALAVEPE--ILLMDEPTSALDPASTARIED--------LMTDLK--K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred HHhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999977777 888775 2 58999999999864 55677888764
No 268
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.4e-24 Score=203.88 Aligned_cols=191 Identities=15% Similarity=0.198 Sum_probs=133.5
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++...|+....++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.+...... ....+.
T Consensus 27 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~ 104 (271)
T PRK14238 27 TQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY--SVEELR 104 (271)
T ss_pred EeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc--cHHHHh
Confidence 3577777876667899999999999999999999999999999999997 689999998766532110 011112
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh-------hhhchHHH---HHHhhC----CCccchhhHhHHHHHHH---HHHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG-------KEQGFDIV---LCDTSG----RLHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~v---l~dt~G----~~~~~~~~~~eLS~G~r---~iAr 284 (372)
. .+.+ +.+.+...+. .+.+.+... .....+.. ..+.++ +.+..+..+.+||+|++ +|||
T Consensus 105 ~--~i~~-v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 105 T--NVGM-VFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred h--hEEE-EecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 2 2222 3444333222 222322211 00011111 112332 33445678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.. +|.++. . +.++|+++|+++.. +.++.+|+.+.
T Consensus 181 aL~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 181 CLAIEPD--VILMDEPTSALDPISTLKVEE--------LVQELK--K-DYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred HHHcCCC--EEEEeCCCCcCCHHHHHHHHH--------HHHHHH--c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988777 888875 3 58999999999864 55678888763
No 269
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-24 Score=200.99 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=131.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+||||+|||||+++|+|++. |++|+|.+.+.+..... .. ...+..
T Consensus 14 ~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~-~~-~~~~~~ 91 (264)
T PRK14243 14 ENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD-VD-PVEVRR 91 (264)
T ss_pred eeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc-cC-hHHHhh
Confidence 466677766567899999999999999999999999999999999986 37899999776542210 00 111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh---------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG---------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAral 286 (372)
. +.+ +.+.....+. .+.+.+... ..+.++. +.+.+|+. +..++.+.+||+||+ +||||+
T Consensus 92 ~--i~~-v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 92 R--IGM-VFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVER-SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred h--EEE-EccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHH-HHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 2 222 3343332222 223222211 0011122 22455653 234677889999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec---------
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG--------- 350 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~--------- 350 (372)
+.+|+ +|+||| |+|+|+..+..++. ++.++. . +.+||++||++... +.++.
T Consensus 167 ~~~p~--lllLDEPt~~LD~~~~~~l~~--------~L~~~~--~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 167 AVQPE--VILMDEPCSALDPISTLRIEE--------LMHELK--E-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred hcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999 999999 99999999988777 888875 3 47999999999764 55665
Q ss_pred cCcccC
Q 017380 351 VGEGVE 356 (372)
Q Consensus 351 ~Ge~v~ 356 (372)
.|+.++
T Consensus 234 ~g~i~~ 239 (264)
T PRK14243 234 YGYLVE 239 (264)
T ss_pred CceEEE
Confidence 677763
No 270
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.9e-24 Score=187.61 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=135.3
Q ss_pred HHHHHhccCC--CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKG--NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~--~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.-.|.... +++++|+++.+|+.++++||+||||||+++.+||+.+|..|+|.+++....-.++ ..++
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---------ergv 78 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---------ERGV 78 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc---------ccee
Confidence 4444565554 6889999999999999999999999999999999999999999997654322222 2233
Q ss_pred ceeEeccccccHHHHHHHHHHhh---------h-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG---------K-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+++.+...|...+.+++... . .......+ ..+|+....++++-+|||||| .|||||+.+|+
T Consensus 79 ---VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l-~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~-- 152 (259)
T COG4525 79 ---VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML-ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ-- 152 (259)
T ss_pred ---EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHhCcccccccceEeecchHHHHHHHHHHhhcCcc--
Confidence 66777777776666655433 1 11233334 578999999999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| +..+|+..+..+-. .+-++-. ..|..++.|||+++.+
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQe--------lLldlw~-~tgk~~lliTH~ieEA 196 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQE--------LLLDLWQ-ETGKQVLLITHDIEEA 196 (259)
T ss_pred eEeecCchhhHHHHHHHHHHH--------HHHHHHH-HhCCeEEEEeccHHHH
Confidence 999999 99999999866655 5555543 5689999999999876
No 271
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=9.8e-24 Score=199.07 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=124.2
Q ss_pred HHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE-----------Eeeccccchhhhh
Q 017380 148 NSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL-----------MAAGDTFRAAASD 215 (372)
Q Consensus 148 ~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~-----------l~~~d~~r~~a~e 215 (372)
.++.+.|+.. .+++++++ +.+|++++|+||||||||||+++|+|+++|++|+|. +.+.+..+. ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~--~~ 80 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY--FT 80 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh--hH
Confidence 3566778654 46889995 899999999999999999999999999999999996 333332111 00
Q ss_pred HHHHHHHhhCcceeEeccccccHHH---HHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 216 QLEIWAERTGCEIVVAEGEKAKASS---VLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 216 ql~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
........+.+ +.+.....+.. .+...+.... ...... +++.+|+.+..++.+.+||+|++ .+||+++.
T Consensus 81 --~~~~~~~~i~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 81 --KLLEGDVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDE-LVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred --Hhhhcccceee-ecchhccCchHHHHHHHHHhchhHHHHHHHH-HHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 00111111111 22222222211 1111111111 122333 44688988878889999999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+ ++++|| |+++|+..+..++. ++.++. .++.++|++||++...
T Consensus 157 ~p~--illlDEPts~LD~~~~~~l~~--------~l~~l~--~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 157 DAD--FYFFDEPSSYLDIKQRLNAAR--------LIRELA--EDDNYVLVVEHDLAVL 202 (255)
T ss_pred CCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hcCCEEEEEECCHHHH
Confidence 999 999999 99999999977777 788775 3478999999998764
No 272
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.6e-24 Score=202.26 Aligned_cols=191 Identities=11% Similarity=0.107 Sum_probs=131.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|++++ ++|+|.+.+.+...... ....+..
T Consensus 24 ~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~--~~~~~~~ 101 (274)
T PRK14265 24 EGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI--NSVKLRR 101 (274)
T ss_pred eeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc--hhHHHhh
Confidence 5677777765678999999999999999999999999999999999863 58999998766532110 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh--------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHHHh
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK--------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAral~ 287 (372)
++.+ +.+.....+. .+.+.+.... .........+.+|+. +..+..+.+||+||+ .||||++
T Consensus 102 --~i~~-v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 102 --QVGM-VFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred --cEEE-EccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2222 3343322221 2222221110 001111123455652 334677889999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec---------c
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG---------V 351 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~---------~ 351 (372)
.+|+ +||||| |+|||+..+..+.. +|.++. . +.+||+++|+.... +.++. .
T Consensus 178 ~~p~--lllLDEPt~~LD~~~~~~l~~--------~L~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~ 244 (274)
T PRK14265 178 MKPD--VLLMDEPCSALDPISTRQVEE--------LCLELK--E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244 (274)
T ss_pred hCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccC
Confidence 9999 999999 99999999988877 788775 3 58999999999754 44564 6
Q ss_pred CcccCC
Q 017380 352 GEGVED 357 (372)
Q Consensus 352 Ge~v~D 357 (372)
|+.+++
T Consensus 245 G~~~~~ 250 (274)
T PRK14265 245 GKLVEF 250 (274)
T ss_pred ceEEEe
Confidence 877643
No 273
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=4e-24 Score=194.53 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=120.0
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh--hhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR--LKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~--l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.+.|++...++++||++.+|++++|+|+||+|||||++.|+|+ ++|++|+|.+++.+..+.... . . .+..+.
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~---~-~-~~~~i~ 80 (200)
T cd03217 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE---E-R-ARLGIF 80 (200)
T ss_pred EEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH---H-H-hhCcEE
Confidence 34455554578999999999999999999999999999999999 478999999987765332211 1 1 011232
Q ss_pred eeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGL 303 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsgl 303 (372)
+ +.+.....+...+.+ .+ .....+||+||+ .+||+++.+|+ +|+||| |+++
T Consensus 81 ~-v~q~~~~~~~~~~~~------------~l----------~~~~~~LS~G~~qrv~laral~~~p~--illlDEPt~~L 135 (200)
T cd03217 81 L-AFQYPPEIPGVKNAD------------FL----------RYVNEGFSGGEKKRNEILQLLLLEPD--LAILDEPDSGL 135 (200)
T ss_pred E-eecChhhccCccHHH------------HH----------hhccccCCHHHHHHHHHHHHHhcCCC--EEEEeCCCccC
Confidence 2 333322221111111 11 122358999999 99999999999 999999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCce-------eeeccCcccC
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPV-------KFVGVGEGVE 356 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi-------~~i~~Ge~v~ 356 (372)
|+..+..++. ++.++. .++.++|++||++..+. ..+..|+.++
T Consensus 136 D~~~~~~l~~--------~L~~~~--~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 136 DIDALRLVAE--------VINKLR--EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred CHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 9999988777 888875 34789999999998754 3456676653
No 274
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=201.00 Aligned_cols=189 Identities=13% Similarity=0.178 Sum_probs=133.4
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+.. . ....+.
T Consensus 23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~-~-~~~~~~ 100 (267)
T PRK14237 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE-I-NVYEMR 100 (267)
T ss_pred EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc-C-ChHHHh
Confidence 3567777776677899999999999999999999999999999999996 47999999776642210 0 011112
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iA 283 (372)
. ++.+ +.+.....+. .+.+.+.... ...+.. +++.+|+. +..++.+.+||+|++ +||
T Consensus 101 ~--~i~~-v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 101 K--HIGM-VFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVET-SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred c--ceEE-EecCCccccc-cHHHHHHhHHHhcCCCCHHHHHHHHHH-HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 2 2322 3443332221 2233322110 011122 23455663 345678899999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+++.+|+ +|+||| |+|+|+..+..++. ++.++. . +.++|++||+.... +..+..|+.+
T Consensus 176 ral~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 176 RAIAVKPD--ILLMDEPASALDPISTMQLEE--------TMFELK--K-NYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred HHHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99999999 999999 99999999987777 788774 3 68999999999764 4567788776
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=1.1e-23 Score=192.31 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=126.2
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++...|+. ...++++||++.+|++++|+||||+|||||++.|+|+++|++|+|.+.+.+...... ..+.. .+
T Consensus 11 ~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~--~i 84 (207)
T cd03369 11 NLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL----EDLRS--SL 84 (207)
T ss_pred EEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH----HHHHh--hE
Confidence 34445543 246899999999999999999999999999999999999999999997765422111 11222 23
Q ss_pred ceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTG 302 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsg 302 (372)
.+ +.+.+...+. .+.+.+........+. +.+.++ .+..+.+||+|++ ++||+++.+|+ +|+||| |+|
T Consensus 85 ~~-v~q~~~~~~~-tv~~~l~~~~~~~~~~-~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~--llllDEP~~~ 155 (207)
T cd03369 85 TI-IPQDPTLFSG-TIRSNLDPFDEYSDEE-IYGALR----VSEGGLNLSQGQRQLLCLARALLKRPR--VLVLDEATAS 155 (207)
T ss_pred EE-EecCCcccCc-cHHHHhcccCCCCHHH-HHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCCccc
Confidence 33 4444433332 3333332211111111 222333 3467889999999 99999999999 999999 999
Q ss_pred CCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 303 LNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 303 lD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+..+..+.. ++.++. ++.++|++||+.+.. +..+.+|+.+
T Consensus 156 LD~~~~~~l~~--------~l~~~~---~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 156 IDYATDALIQK--------TIREEF---TNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred CCHHHHHHHHH--------HHHHhc---CCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 99999977776 777764 378999999998764 3455566554
No 276
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=7.7e-24 Score=191.79 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=115.7
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
...++++||++++|++++|+||||+|||||+++|+|++ +|++|+|.+.+.+.... .+.. .+.+ +.+..
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-------~~~~--~i~~-~~q~~ 91 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-------SFRK--IIGY-VPQDD 91 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH-------hhhh--eEEE-ccCcc
Confidence 45789999999999999999999999999999999999 99999999987765320 1112 2222 33333
Q ss_pred cccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHH
Q 017380 235 KAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAR 310 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~ 310 (372)
...+...+.+.+.... ...+||+||+ .|||+++.+|+ +|++|| |+++|+..+..
T Consensus 92 ~~~~~~t~~~~i~~~~--------------------~~~~LS~G~~qrv~laral~~~p~--illlDEP~~~LD~~~~~~ 149 (194)
T cd03213 92 ILHPTLTVRETLMFAA--------------------KLRGLSGGERKRVSIALELVSNPS--LLFLDEPTSGLDSSSALQ 149 (194)
T ss_pred cCCCCCcHHHHHHHHH--------------------HhccCCHHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCHHHHHH
Confidence 3222222222221100 0118999999 99999999999 999999 99999999988
Q ss_pred HHhhhcCchhhHhhhccccccceeeEeeeeccC--Cc-----eeeeccCccc
Q 017380 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELG--IP-----VKFVGVGEGV 355 (372)
Q Consensus 311 ~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~--~p-----i~~i~~Ge~v 355 (372)
++. ++.++. .++.++|+++|+.. .+ +..+.+|+.+
T Consensus 150 l~~--------~l~~~~--~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 150 VMS--------LLRRLA--DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHH--------HHHHHH--hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 877 888875 45889999999985 22 4456667654
No 277
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.4e-24 Score=192.72 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=121.3
Q ss_pred HHHHHhc----cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 149 SVLDLLT----KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK---NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 149 ~l~~~~~----~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~---~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
++.+.|+ ....++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..... ..+.
T Consensus 8 ~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-----~~~~ 82 (202)
T cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-----EKYP 82 (202)
T ss_pred ccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-----hhhc
Confidence 5556664 2346789999999999999999999999999999999999 88999999876653321 1111
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
. .+.+ +.+.....+...+.+.+..... . . .+..+.+||+||+ .||||++.+|+ +|+||
T Consensus 83 ~--~i~~-~~q~~~~~~~~tv~~~l~~~~~------~----~----~~~~~~~LS~Ge~qrl~laral~~~p~--llllD 143 (202)
T cd03233 83 G--EIIY-VSEEDVHFPTLTVRETLDFALR------C----K----GNEFVRGISGGERKRVSIAEALVSRAS--VLCWD 143 (202)
T ss_pred c--eEEE-EecccccCCCCcHHHHHhhhhh------h----c----cccchhhCCHHHHHHHHHHHHHhhCCC--EEEEc
Confidence 1 2222 4444333332233333322110 0 0 4567889999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee-eeccCC------ceeeeccCccc
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV-VDELGI------PVKFVGVGEGV 355 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i-sH~~~~------pi~~i~~Ge~v 355 (372)
| |+|+|+..+..++. ++.++.. ..+.++|++ +|+.+. -+.++.+|+.+
T Consensus 144 EPt~~LD~~~~~~~~~--------~l~~~~~-~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 144 NSTRGLDSSTALEILK--------CIRTMAD-VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred CCCccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 9 99999999988777 7887752 225565554 554322 25667777754
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.6e-24 Score=191.12 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=111.5
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
++...|++ ...++++||++++|++++|+||||+|||||++.|+|+++ |++|+|.+.+.+.. ..+..
T Consensus 8 ~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--------~~~~~ 79 (192)
T cd03232 8 NLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--------KNFQR 79 (192)
T ss_pred eeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------HHhhh
Confidence 44455543 346889999999999999999999999999999999864 78999999776542 11112
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
. +.+ +.+.+...+...+.+.+.... . ..+||+||+ .+|||++.+|+ +|++||
T Consensus 80 ~--i~~-~~q~~~~~~~~tv~~~l~~~~-------~-------------~~~LSgGe~qrv~la~al~~~p~--vlllDE 134 (192)
T cd03232 80 S--TGY-VEQQDVHSPNLTVREALRFSA-------L-------------LRGLSVEQRKRLTIGVELAAKPS--ILFLDE 134 (192)
T ss_pred c--eEE-ecccCccccCCcHHHHHHHHH-------H-------------HhcCCHHHhHHHHHHHHHhcCCc--EEEEeC
Confidence 2 222 333333222222333322110 0 018999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELG 343 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~ 343 (372)
|+++|+..+..++. ++.++. .++.++|++||+.+
T Consensus 135 P~~~LD~~~~~~l~~--------~l~~~~--~~~~tiiivtH~~~ 169 (192)
T cd03232 135 PTSGLDSQAAYNIVR--------FLKKLA--DSGQAILCTIHQPS 169 (192)
T ss_pred CCcCCCHHHHHHHHH--------HHHHHH--HcCCEEEEEEcCCh
Confidence 99999999988887 788775 35889999999987
No 279
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=2.7e-23 Score=197.07 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=122.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+...+- .| ..++. ......+
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~----~~------~~~~~---~~~tv~e 104 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVI----AI------SAGLS---GQLTGIE 104 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEE----ec------ccCCC---CCCcHHH
Confidence 45789999999999999999999999999999999999999999986532110 00 00000 0000000
Q ss_pred HHHHHHH--HHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHH
Q 017380 238 ASSVLSQ--AVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAR 310 (372)
Q Consensus 238 ~~~~~~~--~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~ 310 (372)
....... ...... ...++. +++..++.+..+..+.+||+||+ ++|++++.+|+ +|+||| |+|+|+..+..
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~--iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 105 NIEFKMLCMGFKRKEIKAMTPK-IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPD--ILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCC--EEEEeCccccCCHHHHHH
Confidence 0000000 000000 011122 33567887777888999999999 99999999999 999999 99999999877
Q ss_pred HHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 311 ~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++. ++.++. ..|+++|++||+.... +.++.+|+.+.
T Consensus 182 l~~--------~L~~~~--~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 182 CLD--------KIYEFK--EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred HHH--------HHHHHH--HCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 777 777775 4588999999998763 56778888763
No 280
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.3e-23 Score=180.21 Aligned_cols=171 Identities=18% Similarity=0.148 Sum_probs=125.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc--chhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF--RAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~--r~~a~eql~~~~~~~~v 226 (372)
+|.-.-+......+++|.+.+|+.+-|.||||+|||||+++|||+++|++|+|.+.+.... |....+.+-+.+.+.++
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~gi 86 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccc
Confidence 4443334445577899999999999999999999999999999999999999999765442 22222334444555554
Q ss_pred ceeEeccccccHHHHHHHHHHhh-------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG-------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
.. ...+.+++... ....+...+ +.+|+....+-++.+||.||+ +|||.++..++ ++|
T Consensus 87 K~----------eLTa~ENL~F~~~~~~~~~~~~i~~Al-~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~p--LWi 153 (209)
T COG4133 87 KT----------ELTALENLHFWQRFHGSGNAATIWEAL-AQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAP--LWI 153 (209)
T ss_pred cc----------hhhHHHHHHHHHHHhCCCchhhHHHHH-HHcCcccccccchhhcchhHHHHHHHHHHHcCCCC--cee
Confidence 32 22333333221 122344444 688999999999999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
||| ++++|.......-. ++..-. .+||.||..||..
T Consensus 154 LDEP~taLDk~g~a~l~~--------l~~~H~--~~GGiVllttHq~ 190 (209)
T COG4133 154 LDEPFTALDKEGVALLTA--------LMAAHA--AQGGIVLLTTHQP 190 (209)
T ss_pred ecCcccccCHHHHHHHHH--------HHHHHh--cCCCEEEEecCCc
Confidence 999 99999988854433 444433 6799999999973
No 281
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.1e-24 Score=198.54 Aligned_cols=190 Identities=14% Similarity=0.194 Sum_probs=131.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--h---cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--N---EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~---~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++.+|++++|+||||+|||||+++|+|+++ | ++|+|.+.+.+...... ....+..
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~ 86 (252)
T PRK14255 9 SDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE--DVVQLRK 86 (252)
T ss_pred EeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc--cHHHhcC
Confidence 456667766567899999999999999999999999999999999875 4 48999997765532110 1111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-------h----hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-------K----EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+. .+++.+... . ...... ..+.+|+. +..+..+.+||+||+ +|||
T Consensus 87 --~i~~-~~q~~~~~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 87 --QVGM-VFQQPNPFPF-SIYENVIYGLRLAGVKDKAVLDEAVET-SLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred --eEEE-EECCCccCCC-cHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 2222 4444333221 222222211 0 011111 23455542 345678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+++.+|+ +|+||| |+|+|+..+..+.. +|.++. . +.++|++||+++.. +..+.+|+.+.+
T Consensus 162 al~~~p~--llllDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 162 VLAVKPD--VILLDEPTSALDPISSTQIEN--------MLLELR--D-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHhcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHH--h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999 999999 99999999988877 888875 3 47999999998764 556778887643
No 282
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.2e-24 Score=200.23 Aligned_cols=189 Identities=11% Similarity=0.133 Sum_probs=130.7
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+.+..+.. . ....+..
T Consensus 11 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~-~-~~~~~~~ 88 (259)
T PRK14260 11 KDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR-I-NINRLRR 88 (259)
T ss_pred EEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc-c-chHhhhh
Confidence 3555666655678999999999999999999999999999999999985 4799999776653210 0 0111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
++.+ +.+.....+ ..+.+.+... ........+++.+|+. +..+..+.+||+||+ +||||
T Consensus 89 --~i~~-v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 89 --QIGM-VFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred --heEE-EecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2322 334333322 2222222110 0011111233566663 345678899999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec-----cCc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG-----VGE 353 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~-----~Ge 353 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||+++.. +.++. .|+
T Consensus 165 l~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 165 LAIKPK--VLLMDEPCSALDPIATMKVEE--------LIHSLR--S-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HhcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCce
Confidence 999999 999999 99999999988777 777775 2 57999999999875 44564 477
Q ss_pred cc
Q 017380 354 GV 355 (372)
Q Consensus 354 ~v 355 (372)
.+
T Consensus 232 i~ 233 (259)
T PRK14260 232 MV 233 (259)
T ss_pred EE
Confidence 65
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-23 Score=199.33 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=131.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-----CCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-----GAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-----~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+|+||+|||||+++|+|+++|+ +|+|.+.+.+..... . ....+..
T Consensus 11 ~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~-~-~~~~~~~ 88 (261)
T PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR-V-NLNRLRR 88 (261)
T ss_pred eeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc-c-chHHhhc
Confidence 45566676555789999999999999999999999999999999999985 789999776642110 0 0111112
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
.+.+ +.+.....+ ..+.+.+... ........+++.+|+. +..++.+.+||+||+ +|||+
T Consensus 89 --~i~~-~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 89 --QVSM-VHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred --cEEE-EecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2222 333333333 2233322210 0011112233566653 245677889999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeecc-----Cc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGV-----GE 353 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~-----Ge 353 (372)
++.+|+ +|+||| |+|+|+..+..++. ++.++.. ..+.++|++||++... +..+.+ |+
T Consensus 165 l~~~p~--vllLDEP~~~LD~~~~~~l~~--------~l~~l~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~ 233 (261)
T PRK14258 165 LAVKPK--VLLMDEPCFGLDPIASMKVES--------LIQSLRL-RSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233 (261)
T ss_pred HhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCce
Confidence 999999 999999 99999999987777 7777642 3488999999999864 556777 77
Q ss_pred cc
Q 017380 354 GV 355 (372)
Q Consensus 354 ~v 355 (372)
.+
T Consensus 234 i~ 235 (261)
T PRK14258 234 LV 235 (261)
T ss_pred EE
Confidence 65
No 284
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=200.81 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=134.1
Q ss_pred HHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHH
Q 017380 146 LKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
..+++.+.|+....++++||++++|++++|+||||+|||||+++|+|+++| ++|+|.+.+.+...... ...+
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~---~~~~ 99 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD---VLEF 99 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch---hHHH
Confidence 346788888776778999999999999999999999999999999999985 68999997765432111 1112
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhh-------hhhch---HHHHHHhhCCCc----cchhhHhHHHHHHH---HHH
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRG-------KEQGF---DIVLCDTSGRLH----TNYSLMEELVACKK---AVG 283 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iA 283 (372)
....+ + +.+.+...+ ..+++.+... ..... ...+++.+|+.+ ..++.+.+||+||+ +||
T Consensus 100 ~~~i~--~-v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 100 RRRVG--M-LFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hhheE--E-eccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 22222 2 333333222 1222222211 00011 112335667653 34567889999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+++.+|+ +|+||| |+|+|+..+..++. ++.++. . ..+||++||+++.. +..+..|+.+
T Consensus 176 ral~~~p~--lllLDEPt~~LD~~~~~~l~~--------~L~~~~--~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 176 RTLAVNPE--VLLLDEPTSALDPTTTEKIEE--------FIRSLA--D-RLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred HHHhcCCC--EEEEcCCcccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999 999999 99999999988877 788875 2 47999999999863 5567788765
No 285
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=2.7e-23 Score=195.13 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=111.4
Q ss_pred CCccceec-----cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 160 KTELQLGY-----RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 160 ~~~isl~i-----~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
+.++++++ .+|++++|+||||||||||+++|+|+++|++|+|.+.+.. ++...| .... .....
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~---i~~~~q------~~~~---~~~~t 77 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT---VSYKPQ------YIKA---DYEGT 77 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce---EEEecc------cccC---CCCCC
Confidence 34555555 4799999999999999999999999999999999986531 111111 0000 00000
Q ss_pred cccHHHHHHHHHH-hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHH
Q 017380 235 KAKASSVLSQAVK-RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQA 309 (372)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~ 309 (372)
..+ .+..... ..........+++.+|+.+..++.+.+||+||+ +||++|+.+|+ +++||| |++||+..+.
T Consensus 78 v~e---~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~--llllDEPt~~LD~~~~~ 152 (246)
T cd03237 78 VRD---LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDAD--IYLLDEPSAYLDVEQRL 152 (246)
T ss_pred HHH---HHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCCcccCCHHHHH
Confidence 000 0000000 000011122344677888777889999999999 99999999999 999999 9999999998
Q ss_pred HHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 310 ~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+.. +|.++.. ..+.+||++||++...
T Consensus 153 ~l~~--------~l~~~~~-~~~~tiiivsHd~~~~ 179 (246)
T cd03237 153 MASK--------VIRRFAE-NNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHH--------HHHHHHH-hcCCEEEEEeCCHHHH
Confidence 8777 7887753 3478999999998764
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=1.1e-23 Score=200.76 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=133.8
Q ss_pred HHHHHhc--cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLT--KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~--~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++...|. ....++++||++++|++++|+|+||+|||||+++|+|++. .+|+|.+++.++.+... ..+... +
T Consensus 7 nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~----~~lr~~--i 79 (275)
T cd03289 7 DLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL----QKWRKA--F 79 (275)
T ss_pred EEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH----HHHhhh--E
Confidence 3444552 2356899999999999999999999999999999999997 78999998877633211 122222 3
Q ss_pred ceeEeccccccHHHHHHHHHHhh---hhhchHHHHHHhhCCCccchhhHhH-----------HHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG---KEQGFDIVLCDTSGRLHTNYSLMEE-----------LVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vl~dt~G~~~~~~~~~~e-----------LS~G~r---~iAral~~~ 289 (372)
.+ +.+.+...+. .+.+.+... ....+... .+.+|+.+..++++.+ ||+||+ .+|||++.+
T Consensus 80 ~~-v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~-l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GV-IPQKVFIFSG-TFRKNLDPYGKWSDEEIWKV-AEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EE-ECCCcccchh-hHHHHhhhccCCCHHHHHHH-HHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 33 5555544443 344444211 11222233 3567887766777766 999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+++|+..+..+.. +|.++. ++.+||+++|+++.. +..+..|+.++
T Consensus 157 p~--illlDEpts~LD~~~~~~l~~--------~l~~~~---~~~tii~isH~~~~i~~~dri~vl~~G~i~~ 216 (275)
T cd03289 157 AK--ILLLDEPSAHLDPITYQVIRK--------TLKQAF---ADCTVILSEHRIEAMLECQRFLVIEENKVRQ 216 (275)
T ss_pred CC--EEEEECccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEECCHHHHHhCCEEEEecCCeEee
Confidence 99 999999 99999999977666 666653 478999999999763 56677887764
No 287
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.4e-23 Score=191.20 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=112.1
Q ss_pred HHHHHhccC-----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHH---
Q 017380 149 SVLDLLTKK-----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW--- 220 (372)
Q Consensus 149 ~l~~~~~~~-----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~--- 220 (372)
++.+.|++. ..++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+.+ +++...|-..+
T Consensus 5 ~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l~~~ 80 (204)
T cd03250 5 DASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPWIQNG 80 (204)
T ss_pred EEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCchhccC
Confidence 344556542 478999999999999999999999999999999999999999999865 11111111000
Q ss_pred --HHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 221 --AERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 221 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
.+.+.... . ... ....+... .......+ +.. |+....+....+||+|++ .|||+++.+|+
T Consensus 81 t~~enl~~~~-----~-~~~-~~~~~~~~---~~~l~~~~-~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~-- 147 (204)
T cd03250 81 TIRENILFGK-----P-FDE-ERYEKVIK---ACALEPDL-EILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD-- 147 (204)
T ss_pred cHHHHhccCC-----C-cCH-HHHHHHHH---HcCcHHHH-HhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC--
Confidence 00000000 0 000 00001000 00111111 111 333445566789999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++++|| |+++|+..+..++.. ++.++. .++.+||++||+....
T Consensus 148 llllDEP~~~LD~~~~~~l~~~-------ll~~~~--~~~~tvi~~sh~~~~~ 191 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFEN-------CILGLL--LNNKTRILVTHQLQLL 191 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHH-------HHHHhc--cCCCEEEEEeCCHHHH
Confidence 999999 999999988777663 445453 3478999999998653
No 288
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.8e-24 Score=200.31 Aligned_cols=191 Identities=14% Similarity=0.147 Sum_probs=132.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|+....++++||++++|++++|+|+||||||||+++|+|+++| ++|+|.+.+.+............+..
T Consensus 20 ~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~ 99 (265)
T PRK14252 20 NKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM 99 (265)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc
Confidence 5677777765678999999999999999999999999999999999875 68999997654321000000111222
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.....+. .+.+.+.... .+..... .+.+++. +..++.+.+||+|++ .|||
T Consensus 100 --~i~~-~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 100 --RISM-VFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENA-LRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred --cEEE-EccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHH-HHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 2222 3343333332 2233222110 0112222 2455653 344677889999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++.+|+ +|+||| |+|+|+..+..+.. ++.++. . +.++|++||++... +..+..|+.++
T Consensus 175 al~~~p~--llllDEPt~gLD~~~~~~l~~--------~l~~l~--~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 175 ALATDPE--ILLFDEPTSALDPIATASIEE--------LISDLK--N-KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--h-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999977777 888875 2 58999999999764 55667887763
No 289
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=198.87 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=130.7
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+...|++...++++||++++|++++|+|+||+|||||+++|+|+++| ++|+|.+.+.+..... .. ...+....
T Consensus 14 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~-~~-~~~~~~~i 91 (261)
T PRK14263 14 DKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG-VD-PVVVRRYI 91 (261)
T ss_pred EEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc-cc-hHhhhhce
Confidence 34556665678999999999999999999999999999999999986 6899999887653211 01 11222222
Q ss_pred CcceeEeccccccHHHHHHHHHHhh---------hhhchHHHHHHhhCCCc----cchhhHhHHHHHHH---HHHHHHhC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG---------KEQGFDIVLCDTSGRLH----TNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~vl~dt~G~~~----~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+ + +.+...... ..+.+.+... ....+..+ ++.+|+.+ ..+..+.+||+|++ .||||++.
T Consensus 92 ~--~-v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 92 G--M-VFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHA-LQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred E--E-EecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHH-HHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2 2 333332221 1222222211 01122333 36777743 23466789999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec--------cCc
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG--------VGE 353 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~--------~Ge 353 (372)
+|+ +|+||| |+|+|+..+.+++. ++.++. ++.++|+++|+++.. +.++. .|+
T Consensus 167 ~p~--llllDEPtsgLD~~~~~~l~~--------~l~~~~---~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~ 233 (261)
T PRK14263 167 EPE--VLLLDEPCSALDPIATRRVEE--------LMVELK---KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGY 233 (261)
T ss_pred CCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHh---cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCce
Confidence 999 999999 99999999988887 788774 367999999999853 44563 677
Q ss_pred ccC
Q 017380 354 GVE 356 (372)
Q Consensus 354 ~v~ 356 (372)
.++
T Consensus 234 i~~ 236 (261)
T PRK14263 234 LVE 236 (261)
T ss_pred EEE
Confidence 663
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=1.6e-23 Score=215.00 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=130.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|++++ ++|+|.+.+.+...... ...+.. .+
T Consensus 264 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~---~~~~~~--~i 338 (490)
T PRK10938 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET---IWDIKK--HI 338 (490)
T ss_pred eceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC---HHHHHh--hc
Confidence 3455566555568899999999999999999999999999999998765 68999998765321100 011111 12
Q ss_pred ceeEeccccccH--HHHHHHHHH--------------hhhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHH
Q 017380 227 EIVVAEGEKAKA--SSVLSQAVK--------------RGKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~~~~~--------------~~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral 286 (372)
.+ +.+...... ...+.+.+. ....+.++. +++.+|+.+ ..++++.+||+||+ +||+|+
T Consensus 339 ~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 416 (490)
T PRK10938 339 GY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQ-WLDILGIDKRTADAPFHSLSWGQQRLALIVRAL 416 (490)
T ss_pred eE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHH-HHHHcCCchhhccCchhhCCHHHHHHHHHHHHH
Confidence 22 222211100 001111110 000112233 346789887 77889999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccc-eeeEeeeeccCCc-------eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARG-GCVVSVVDELGIP-------VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~g-g~vi~isH~~~~p-------i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+|||+..+..+.. +|.++. .++ .+||++||+++.. +.++.+|+.+.
T Consensus 417 ~~~p~--lllLDEPt~gLD~~~~~~l~~--------~L~~l~--~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 417 VKHPT--LLILDEPLQGLDPLNRQLVRR--------FVDVLI--SEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred hcCCC--EEEEcCccccCCHHHHHHHHH--------HHHHHH--hcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 99999 999999 99999999988887 888886 334 4699999998765 33456776653
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=7.9e-23 Score=176.95 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=126.5
Q ss_pred HHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc--hhhhh-HHHHHHHhhCcce
Q 017380 152 DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR--AAASD-QLEIWAERTGCEI 228 (372)
Q Consensus 152 ~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r--~~a~e-ql~~~~~~~~v~~ 228 (372)
..-+....++++||++.+|+.++|+||+||||||+++.+|.+..|++|.+.+.|.|... ..+.. |..+.++. |-
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~---pa 87 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT---PA 87 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC---cc
Confidence 33344566899999999999999999999999999999999999999999998876432 22222 22333322 22
Q ss_pred eEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGL 303 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsgl 303 (372)
.......++..+.+......-.......++..+++.+. ..+.+.+||||++ +++|-|..-|+ +|+||| |+.|
T Consensus 88 -Lfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~--ILLLDE~TsAL 164 (223)
T COG4619 88 -LFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK--ILLLDEITSAL 164 (223)
T ss_pred -ccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc--eEEecCchhhc
Confidence 22222222222222221111112222234467788765 5788999999999 99999999999 999999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+.+...+-+ ++-++-. .+..+++.||||-+-.
T Consensus 165 D~~nkr~ie~--------mi~~~v~-~q~vAv~WiTHd~dqa 197 (223)
T COG4619 165 DESNKRNIEE--------MIHRYVR-EQNVAVLWITHDKDQA 197 (223)
T ss_pred ChhhHHHHHH--------HHHHHhh-hhceEEEEEecChHHH
Confidence 9999866665 5666542 5689999999998774
No 292
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=3.6e-23 Score=191.33 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=119.0
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc--HHHHH
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK--ASSVL 242 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~--~~~~~ 242 (372)
|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+ +.. .+.+ +.+.+... ....+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------~~~--~i~~-v~q~~~~~~~~~~tv 68 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------GWR--HIGY-VPQRHEFAWDFPISV 68 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---------hhC--cEEE-ecccccccCCCCccH
Confidence 4578999999999999999999999999999999999997765411 111 1212 22222110 00111
Q ss_pred HHHHHh--------------hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCC
Q 017380 243 SQAVKR--------------GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 243 ~~~~~~--------------~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD 304 (372)
.+.+.. .....+.. +++.+|+.+..+..+.+||+||+ +|||+++.+|+ +|++|| |+|+|
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~--llilDEP~~~LD 145 (223)
T TIGR03771 69 AHTVMSGRTGHIGWLRRPCVADFAAVRD-ALRRVGLTELADRPVGELSGGQRQRVLVARALATRPS--VLLLDEPFTGLD 145 (223)
T ss_pred HHHHHhccccccccccCCcHHHHHHHHH-HHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC--EEEEeCCcccCC
Confidence 111110 00111222 44678988878889999999999 99999999999 999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+..+..+.+ ++.++. .+|.++|++||+++.. +.++ +|+.+
T Consensus 146 ~~~~~~l~~--------~l~~~~--~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 146 MPTQELLTE--------LFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred HHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 999988887 777775 4588999999999743 4456 68766
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=2.1e-23 Score=191.89 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=116.4
Q ss_pred HHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeE
Q 017380 152 DLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVV 230 (372)
Q Consensus 152 ~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~ 230 (372)
..|+. ...++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+............+ +.++.+ +
T Consensus 8 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~i~~-~ 84 (218)
T cd03290 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN--RYSVAY-A 84 (218)
T ss_pred EecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhh--cceEEE-E
Confidence 34542 3468899999999999999999999999999999999999999999976654221100000001 112222 3
Q ss_pred eccccccHHHHHHHHHHhhh---hhchHHHHHHhhCCCcc-----------chhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 231 AEGEKAKASSVLSQAVKRGK---EQGFDIVLCDTSGRLHT-----------NYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~---~~~~d~vl~dt~G~~~~-----------~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
.+.+...+ ..+.+.+.... ...... ..+..++.+. .+..+.+||+||+ .|||+++.+|+
T Consensus 85 ~q~~~~~~-~t~~~nl~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~-- 160 (218)
T cd03290 85 AQKPWLLN-ATVEENITFGSPFNKQRYKA-VTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN-- 160 (218)
T ss_pred cCCCcccc-ccHHHHHhhcCcCCHHHHHH-HHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC--
Confidence 33332221 12233332110 111112 2234444321 2356789999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHh-hhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 294 LLVLDG-TTGLNMLPQAREFN-DVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~-~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+||| |+|+|+..+..++. . ++..+. ..+.++|++||+....
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~-------ll~~~~--~~~~tii~~sH~~~~~ 205 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEG-------ILKFLQ--DDKRTLVLVTHKLQYL 205 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHH-------HHHHHh--cCCCEEEEEeCChHHH
Confidence 999999 99999998876654 1 344444 3478999999998763
No 294
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=1.4e-23 Score=198.10 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=128.9
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|+. ...++++||++++|++++|+|+||+|||||+++|+|+++|++|+|.+.+.+...... ..+....+
T Consensus 23 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~----~~~~~~i~ 98 (257)
T cd03288 23 HDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL----HTLRSRLS 98 (257)
T ss_pred EEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH----HHHhhhEE
Confidence 355556654 357899999999999999999999999999999999999999999998766532211 11112222
Q ss_pred cceeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+ +.+.+...+. .+.+.+... ........+ +.+ |+....+..+.+||+|++ ++||+++.
T Consensus 99 --~-v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 99 --I-ILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMV-KSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred --E-ECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHH-hhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 2 3333222221 122111100 001111111 222 444444556789999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+ +|+||| |+|+|+..+..++. ++.++. ++.++|+++|++... +.++.+|+.+++
T Consensus 174 ~p~--llllDEPt~gLD~~~~~~l~~--------~l~~~~---~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 174 KSS--ILIMDEATASIDMATENILQK--------VVMTAF---ADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred CCC--EEEEeCCccCCCHHHHHHHHH--------HHHHhc---CCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 999 999999 99999999877776 676653 378999999999864 567778887744
No 295
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=2e-23 Score=217.35 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHHHHHhccC-----CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKK-----GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~-----~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++...|++. ..++++||++++|++++|+||||+||||+++.|+|+++|++|+|.++|.|...... ..+.
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~----~~~~ 415 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR----DDYR 415 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHH
Confidence 35667777642 36899999999999999999999999999999999999999999998776543221 1222
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchh------hHhHHHHHHH---HHHHHHhCCCCc
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYS------LMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~------~~~eLS~G~r---~iAral~~~P~~ 292 (372)
...++ +.+++.........+.......++....+ +.+|+.+.... ....|||||| +||||++.+|+
T Consensus 416 ~~i~~---v~q~~~lf~~ti~~n~~~~~~~~~~~~~~-~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~- 490 (555)
T TIGR01194 416 DLFSA---IFADFHLFDDLIGPDEGEHASLDNAQQYL-QRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP- 490 (555)
T ss_pred hhCcE---EccChhhhhhhhhcccccchhHHHHHHHH-HHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC-
Confidence 22322 34433322222111110011111222222 45565443222 2367999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCCCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVEDLQ 359 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~Dl~ 359 (372)
+||||| |+++|+..+..+.+. ++..+. .++.|+|+++|++... +..+.+|+.++++.
T Consensus 491 -ililDE~ts~LD~~~~~~i~~~-------l~~~~~--~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~~ 553 (555)
T TIGR01194 491 -ILLFDEWAADQDPAFKRFFYEE-------LLPDLK--RQGKTIIIISHDDQYFELADQIIKLAAGCIVKDTE 553 (555)
T ss_pred -EEEEeCCccCCCHHHHHHHHHH-------HHHHHH--hCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 999999 999999999777663 444443 3578999999998643 66788899887764
No 296
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=1.3e-23 Score=239.86 Aligned_cols=186 Identities=17% Similarity=0.161 Sum_probs=137.5
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+|.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..+. .....+.+++
T Consensus 1942 nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~-----~~~~r~~IGy 2016 (2272)
T TIGR01257 1942 ELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN-----ISDVHQNMGY 2016 (2272)
T ss_pred EEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch-----HHHHhhhEEE
Confidence 45566764 3578999999999999999999999999999999999999999999988775321 1112222332
Q ss_pred ceeEeccccccHHHHHHHHHHh---------hh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKR---------GK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.....+...+.+.+.. .. .+.++. +++.+|+.+..++++.+||||+| .+|+|++.+|+
T Consensus 2017 ---~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~-lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~-- 2090 (2272)
T TIGR01257 2017 ---CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANW-SIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP-- 2090 (2272)
T ss_pred ---EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC--
Confidence 3343322221122222211 00 111222 34678998888999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+++ +|.++. ++|.+||++||+++.. +..+.+|+.+
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~--------lL~~l~--~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWN--------TIVSII--REGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988888 888875 4588999999999864 4556667554
No 297
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=201.46 Aligned_cols=191 Identities=13% Similarity=0.174 Sum_probs=132.9
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHH
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
.+++...|+...+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+... ....+.
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~--~~~~~~ 125 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV--NLVELR 125 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--cHHHHh
Confidence 3577777776667899999999999999999999999999999999986 589999998766533110 011111
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh-----------------------hhhchHHHHHHhhCCC----ccchhhHhH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG-----------------------KEQGFDIVLCDTSGRL----HTNYSLMEE 274 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~d~vl~dt~G~~----~~~~~~~~e 274 (372)
. .+.+ +.+.....+. .+.+.+... ....+.. +++.+|+. +..+..+.+
T Consensus 126 ~--~i~~-v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 126 K--RVGM-VFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER-SLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred h--ceEE-EccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHH-HHHHcCCchhhhHHhcCcccc
Confidence 2 2222 3333222221 122211110 0011222 23455653 344677899
Q ss_pred HHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----
Q 017380 275 LVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP----- 345 (372)
Q Consensus 275 LS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p----- 345 (372)
||+||+ +|||||+.+|+ +|+||| |+|||+..+..+.. +|.++. . +.++|++||+++..
T Consensus 201 LSgGq~qrv~LAraL~~~p~--lLLLDEPtsgLD~~~~~~l~~--------~L~~~~--~-~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPE--VILMDEPASALDPIATSKIED--------LIEELA--E-EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh--c-CCEEEEEEcCHHHHHHhcC
Confidence 999999 99999999999 999999 99999999988777 787775 2 47999999999874
Q ss_pred -e-eeeccCcccCC
Q 017380 346 -V-KFVGVGEGVED 357 (372)
Q Consensus 346 -i-~~i~~Ge~v~D 357 (372)
+ .++..|+.+.+
T Consensus 268 ~i~~~l~~G~i~~~ 281 (305)
T PRK14264 268 QTAVFLTGGELVEY 281 (305)
T ss_pred EEEEEecCCEEEEe
Confidence 2 34578887744
No 298
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.7e-23 Score=210.94 Aligned_cols=190 Identities=14% Similarity=0.214 Sum_probs=132.6
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc---
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK--- 235 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~--- 235 (372)
.++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..+..... ... .++.+ +.+...
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~---~~~--~~i~~-~~q~~~~~~ 336 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE---AIN--HGFAL-VTEERRSTG 336 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH---HHH--CCCEE-cCCchhhCC
Confidence 578999999999999999999999999999999999999999999776653221111 111 11111 111110
Q ss_pred ccHHH-----HHHHHHHh----------h-hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 236 AKASS-----VLSQAVKR----------G-KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 236 ~~~~~-----~~~~~~~~----------~-~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
..+.. .+.+.+.. . .......+ ++.+|+. +..++.+.+||+||+ .|||+++.+|+ +|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~--il 413 (491)
T PRK10982 337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWV-IDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPE--IL 413 (491)
T ss_pred cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHH-HHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCC--EE
Confidence 00000 00110100 0 01112233 3566774 456889999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCCCCCHHHH
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQPFDAEAF 366 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~~~~~~~~ 366 (372)
+||| |+|+|+..+..+++ ++.++. .+|++||++|||++.. +.++.+|+.+. +-.+++.+++
T Consensus 414 lLDEPt~gLD~~~~~~~~~--------~l~~l~--~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~~~ 483 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQ--------LIAELA--KKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEI 483 (491)
T ss_pred EEcCCCcccChhHHHHHHH--------HHHHHH--HCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccCCHHHH
Confidence 9999 99999999988887 888876 4589999999998875 66778888772 2355565555
Q ss_pred H
Q 017380 367 V 367 (372)
Q Consensus 367 v 367 (372)
.
T Consensus 484 ~ 484 (491)
T PRK10982 484 L 484 (491)
T ss_pred H
Confidence 4
No 299
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=195.01 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=130.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--h---cCCeEEEeeccccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--N---EGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~---~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|++. | ++|+|.+.+.+..+... ....+..
T Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~~~~ 87 (253)
T PRK14261 10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA--DVVALRR 87 (253)
T ss_pred eeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc--chhhhhc
Confidence 455666766667899999999999999999999999999999999875 3 48999998766532100 0111111
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh-----------hhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK-----------EQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAr 284 (372)
.+.+ +.+.+...+. .+.+.+.... ...+.. +++.+++. ...++.+.+||+||+ .|||
T Consensus 88 --~i~~-~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 88 --KIGM-VFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEK-SLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred --eEEE-EecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHH-HHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 2222 3444333222 2232222110 011122 22455553 235678899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+++.+|+ +++||| |+|+|+..+..+.. ++.++. . +.++|++||++... +..+..|+.+
T Consensus 163 al~~~p~--lllLDEP~~gLD~~~~~~l~~--------~l~~~~--~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 163 TLAVNPE--VILMDEPCSALDPIATAKIED--------LIEDLK--K-EYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred HHhcCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh--h-CceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 9999999 999999 99999999987776 777775 2 47999999998754 4567788766
No 300
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=9.1e-23 Score=186.76 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=128.2
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA 236 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~ 236 (372)
..+++|+||++.+|+.++|||+||||||||+++|+|.++|++|+|.+.+ +... .-.++..+ .....+.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-~v~~----------li~lg~Gf-~pelTGr 107 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAP----------LIELGAGF-DPELTGR 107 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-eEeh----------hhhcccCC-CcccchH
Confidence 3568999999999999999999999999999999999999999999954 3311 11122222 2222222
Q ss_pred cHHHHHHHHH---HhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHH
Q 017380 237 KASSVLSQAV---KRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQA 309 (372)
Q Consensus 237 ~~~~~~~~~~---~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~ 309 (372)
++.......+ .....+.++. ++|.+.+.++.+.++..+|.||+ +++-+...+|+ +|++|| .+--|+.-+.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~e-IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pd--ILllDEvlavGD~~F~~ 184 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDE-IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPD--ILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHH-HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCC--EEEEehhhhcCCHHHHH
Confidence 2222111111 1111233444 45899999999999999999999 77777788999 999999 8888988887
Q ss_pred HHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 310 ~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+... -+..+. .++.++|+|||+++.. +.++..||...
T Consensus 185 K~~~--------rl~e~~--~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 185 KCLE--------RLNELV--EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred HHHH--------HHHHHH--HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 7776 555554 4579999999999986 56778888773
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=4.9e-23 Score=215.14 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=128.7
Q ss_pred HHHHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE-----------Eeeccccchhh
Q 017380 146 LKNSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL-----------MAAGDTFRAAA 213 (372)
Q Consensus 146 l~~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~-----------l~~~d~~r~~a 213 (372)
+.+.+++.|+.+ .++.+++ .+++|++++|+||||+||||++++|+|+++|+.|+|. +.|.+....
T Consensus 75 ~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~-- 151 (590)
T PRK13409 75 LEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY-- 151 (590)
T ss_pred hccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH--
Confidence 556788899874 4789999 7999999999999999999999999999999999997 444443110
Q ss_pred hhHHHHHHHhhCcceeEeccccccHHH---HHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 214 SDQLEIWAERTGCEIVVAEGEKAKASS---VLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 214 ~eql~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
...+. .....+.. ..+.....+.. .+.+.+.... ...++.++ +.+|+.+..++.+.+||+||+ +||+++
T Consensus 152 ~~~~~--~~~~~~~~-~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l-~~l~l~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 152 FKKLY--NGEIKVVH-KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVV-ERLGLENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred HHHHh--ccCcceee-cccchhhhhhhhcchHHHHHHhhhHHHHHHHHH-HHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 00000 00011111 11111111111 2223332211 12234444 678998888999999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+.+|+ +|+||| |++||+..+..++. +|.++. . |.++|+++|++...
T Consensus 228 ~~~p~--lllLDEPts~LD~~~~~~l~~--------~i~~l~--~-g~tvIivsHd~~~l 274 (590)
T PRK13409 228 LRDAD--FYFFDEPTSYLDIRQRLNVAR--------LIRELA--E-GKYVLVVEHDLAVL 274 (590)
T ss_pred hcCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--C-CCEEEEEeCCHHHH
Confidence 99999 999999 99999999988887 888886 4 88999999998864
No 302
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.4e-23 Score=193.66 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=129.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++...|++...++++||++.+|++++|+||||+|||||+++|+|+.. |++|+|.+++.+..... .. ...+...
T Consensus 8 ~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-~~-~~~~~~~ 85 (250)
T PRK14266 8 NLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA-VD-VVELRKK 85 (250)
T ss_pred eEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc-cc-HHHHhhh
Confidence 44455655457899999999999999999999999999999999874 38899999876643210 00 1111222
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCC----ccchhhHhHHHHHHH---HHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRL----HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~iAra 285 (372)
+.+ +++.+...+. .+.+.+... ..+.+.. +++.+|+. +..+..+.+||+||+ +|||+
T Consensus 86 --i~~-~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 160 (250)
T PRK14266 86 --VGM-VFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEE-SLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160 (250)
T ss_pred --eEE-EecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHH-HHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 222 3443333322 222222211 0011122 23455653 234677889999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+|+|+..+..+.. ++.++. ++.++|++||+.... +.++.+|+.+.
T Consensus 161 l~~~p~--llllDEP~~gLD~~~~~~l~~--------~l~~~~---~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 161 IAVSPE--VILMDEPCSALDPISTTKIED--------LIHKLK---EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred HHcCCC--EEEEcCCCccCCHHHHHHHHH--------HHHHHh---cCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999 999999 99999999988777 787774 368999999999764 44577887764
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=4.4e-23 Score=214.83 Aligned_cols=189 Identities=21% Similarity=0.228 Sum_probs=125.0
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH------H
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI------W 220 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~------~ 220 (372)
++|.+.|+ ....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .+.+.+.|-.. .
T Consensus 10 ~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv 87 (556)
T PRK11819 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQLDPEKTV 87 (556)
T ss_pred eeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCCCCcH
Confidence 46677787 566789999999999999999999999999999999999999999988431 11111111000 0
Q ss_pred HHhhCccee-E-------e------cccccc------HHHHHHHHHHhh----hhhchHHHHHHhhCCCccchhhHhHHH
Q 017380 221 AERTGCEIV-V-------A------EGEKAK------ASSVLSQAVKRG----KEQGFDIVLCDTSGRLHTNYSLMEELV 276 (372)
Q Consensus 221 ~~~~~v~~~-~-------~------~~~~~~------~~~~~~~~~~~~----~~~~~d~vl~dt~G~~~~~~~~~~eLS 276 (372)
.+.+..... . . ...... ....+.+.+... ....+.. +++.+|+.. .++.+.+||
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~-~~~~~~~LS 165 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEI-AMDALRCPP-WDAKVTKLS 165 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHH-HHHhCCCCc-ccCchhhcC
Confidence 000000000 0 0 000000 000000000000 0112233 346778853 578899999
Q ss_pred HHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------e
Q 017380 277 ACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------V 346 (372)
Q Consensus 277 ~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i 346 (372)
+||+ .||++++.+|+ +|+||| |++||+..+..+.+ +|.++. ++||++||+++.. +
T Consensus 166 gGqkqrv~la~al~~~p~--vlLLDEPt~~LD~~~~~~l~~--------~L~~~~-----~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 166 GGERRRVALCRLLLEKPD--MLLLDEPTNHLDAESVAWLEQ--------FLHDYP-----GTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred HHHHHHHHHHHHHhCCCC--EEEEcCCCCcCChHHHHHHHH--------HHHhCC-----CeEEEEeCCHHHHHhhcCeE
Confidence 9999 99999999999 999999 99999999987776 776652 5999999999764 5
Q ss_pred eeeccCccc
Q 017380 347 KFVGVGEGV 355 (372)
Q Consensus 347 ~~i~~Ge~v 355 (372)
.++.+|+.+
T Consensus 231 ~~l~~g~i~ 239 (556)
T PRK11819 231 LELDRGRGI 239 (556)
T ss_pred EEEeCCEEE
Confidence 677788764
No 304
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=1.2e-22 Score=186.58 Aligned_cols=169 Identities=11% Similarity=0.013 Sum_probs=115.9
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE-EeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL-MAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~-l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|. +.+... ..+ ....+ .......+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~---------~~~~l---~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLG---------ANSFI---LPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccc---------ccccc---CCcCcHHH
Confidence 46789999999999999999999999999999999999999997 533221 110 00111 11111111
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
.......... .........+.+..++....+..+.+||+||+ ++|++++.+|+ ++++|| ++++|+..+..+..
T Consensus 69 nl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~--llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 69 NARMMASLYG-LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCR--LYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCC--EEEECCCCccCCHHHHHHHHH
Confidence 1111111000 01111222333455776667889999999999 99999999999 999999 99999999877776
Q ss_pred hhcCchhhHhh-hccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 314 DVVGITGLILT-KLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 314 ~~~~~tgiilt-kld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
.+. ++. +.++|++||++... +..+..|+.+
T Consensus 146 --------~l~~~~~----~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 146 --------ALACQLQ----QKGLIVLTHNPRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred --------HHHHHhh----CCcEEEEECCHHHHHHhcCeeEEEECCeEE
Confidence 443 332 34699999999864 4567788877
No 305
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.2e-22 Score=199.86 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=141.2
Q ss_pred HHHHHHHHHhccCC-CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 145 ALKNSVLDLLTKKG-NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 145 ~l~~~l~~~~~~~~-~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+..+++...|++.. .++++||++++|+.++|||+|||||||+++.|.+++. ++|+|+++|.|..+.. ++...+.
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~----~~SlR~~ 426 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS----LESLRQS 426 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC----hHHhhhh
Confidence 44567888888766 8999999999999999999999999999999999999 8999999998874432 2233344
Q ss_pred hCcceeEeccccccHHHHHHH------------HHHhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 224 TGCEIVVAEGEKAKASSVLSQ------------AVKRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+++ ++|+.......+.+. .++.++..+....+.... |......++...|||||| +++||++
T Consensus 427 Ig~---VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 427 IGV---VPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred eeE---eCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 444 667666555444332 122222233333332111 222234566778999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
.+|+ ++++|| |+.+|..+..+++. .+.+. ..+.|+|+|.|++... |.++.+|...
T Consensus 504 Kda~--Il~~DEaTS~LD~~TE~~i~~--------~i~~~---~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 504 KDAP--ILLLDEATSALDSETEREILD--------MIMDV---MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred cCCC--eEEecCcccccchhhHHHHHH--------HHHHh---cCCCeEEEEEecchhHhcCCEEEEEECCeeE
Confidence 9999 999999 99999999999998 44442 4589999999999986 7788888655
No 306
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=9.8e-23 Score=213.49 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=130.8
Q ss_pred HHHH-HHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVL-DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~-~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++. ..+++..+++|+||++++|+.++|||||||||||+++.|+|++ |++|+|.+++.|...... ..+.+..++
T Consensus 353 ~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~----~~lr~~i~~ 427 (588)
T PRK11174 353 EDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP----ESWRKHLSW 427 (588)
T ss_pred EeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH----HHHHhheEE
Confidence 4554 2334445789999999999999999999999999999999999 999999998877633321 223333332
Q ss_pred ceeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.|.+..... .+++++.... ..+.+..+.... |+..........|||||| +||||++.+
T Consensus 428 ---v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 428 ---VGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred ---ecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 5555544332 2333333221 112222221110 333233344557999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
|+ +|+||| |+++|..+...+.+ .+.++ .++.|+|+|||++... +.++.+|+.+++
T Consensus 504 ~~--IliLDE~TSaLD~~te~~i~~--------~l~~~---~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 504 CQ--LLLLDEPTASLDAHSEQLVMQ--------ALNAA---SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CC--EEEEeCCccCCCHHHHHHHHH--------HHHHH---hCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 99 999999 99999999988877 56555 3578999999998664 667888888753
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=3.6e-23 Score=236.40 Aligned_cols=187 Identities=16% Similarity=0.270 Sum_probs=141.1
Q ss_pred HHHHHHHhc--cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLT--KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~--~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.++|.+.|+ +..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+..+ +...+.+.+
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-----~~~~~r~~I 1005 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-----NLDAVRQSL 1005 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-----hHHHHhhcE
Confidence 357778884 3457899999999999999999999999999999999999999999998877532 122222223
Q ss_pred CcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ + +.+.....+...+.+.+... ..+.++.+ ++.+|+.+..++.+.+||+||| +||+|++.+|+
T Consensus 1006 G--~-~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~l-L~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk 1081 (2272)
T TIGR01257 1006 G--M-CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAM-LEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081 (2272)
T ss_pred E--E-EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3 2 34443332222222222110 01123334 4678998888999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+++ +|.++. +|.+||++||+++.. +..+.+|+.+
T Consensus 1082 --VLLLDEPTSGLDp~sr~~l~~--------lL~~l~---~g~TIIltTHdmdea~~laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1082 --VVVLDEPTSGVDPYSRRSIWD--------LLLKYR---SGRTIIMSTHHMDEADLLGDRIAIISQGRLY 1139 (2272)
T ss_pred --EEEEECCCcCCCHHHHHHHHH--------HHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988888 888884 488999999998765 5567778765
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=5.7e-23 Score=212.71 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=123.9
Q ss_pred HHHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 147 KNSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 147 ~~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
.+++...|++ ...++|+||++++|+.++|+|||||||||+++.|+|+++|++|+|.+++.|.... ...+.+..+
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-----~~~lr~~i~ 411 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-----QDELRRRIS 411 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-----HHHHHhheE
Confidence 4567777764 3478999999999999999999999999999999999999999999988776332 222333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.|.+...+. .+++++.... .+++..++ +.+|+.+ ........|||||| +||||+.
T Consensus 412 ~---V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al-~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall 486 (529)
T TIGR02868 412 V---FAQDAHLFDT-TVRDNLRLGRPDATDEELWAAL-ERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL 486 (529)
T ss_pred E---EccCcccccc-cHHHHHhccCCCCCHHHHHHHH-HHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh
Confidence 3 5666554443 2344443221 11222222 2333322 12233456999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
.+|+ +|+||| |+++|+.....+.+ .+.++ .++.|+|+|+|++
T Consensus 487 ~~~~--iliLDE~TSaLD~~te~~I~~--------~l~~~---~~~~TvIiItHrl 529 (529)
T TIGR02868 487 ADAP--ILLLDEPTEHLDAGTESELLE--------DLLAA---LSGKTVVVITHHL 529 (529)
T ss_pred cCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHh---cCCCEEEEEecCC
Confidence 9999 999999 99999999988877 45554 3578999999984
No 309
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-23 Score=221.41 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=126.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhH---------HHH
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ---------LEI 219 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eq---------l~~ 219 (372)
+|.+.|+....++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.+... .+...| +..
T Consensus 6 nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~--i~~~~q~~~~~~~~~~~~ 83 (638)
T PRK10636 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ--LAWVNQETPALPQPALEY 83 (638)
T ss_pred EEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE--EEEEecCCCCCCCCHHHH
Confidence 566778877789999999999999999999999999999999999999999999865421 110000 000
Q ss_pred HHHhhCcceeEe------c-cccccHHHHHHHHHHh----hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHH
Q 017380 220 WAERTGCEIVVA------E-GEKAKASSVLSQAVKR----GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 220 ~~~~~~v~~~~~------~-~~~~~~~~~~~~~~~~----~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAr 284 (372)
..+.......+. . ................ .....+..+ ++.+|+. +..++++.+||+||+ +||+
T Consensus 84 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~lgl~~~~~~~~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 84 VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL-LHGLGFSNEQLERPVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH-HHhCCCCchhhcCchhhcCHHHHHHHHHHH
Confidence 000000000000 0 0000000000000000 001123334 4678886 456889999999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+.+|+ +|+||| |++||+..+..+.. ++.++ +++||+||||.... +..+.+|+.+
T Consensus 163 aL~~~P~--lLLLDEPtn~LD~~~~~~L~~--------~L~~~-----~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 163 ALICRSD--LLLLDEPTNHLDLDAVIWLEK--------WLKSY-----QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred HHccCCC--EEEEcCCCCcCCHHHHHHHHH--------HHHhC-----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 9999999 999999 99999999977666 66654 46999999998764 5567777764
No 310
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=9.2e-23 Score=182.98 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=132.3
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccH
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKA 238 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~ 238 (372)
+++++++++.+|+++.++|.||+||||+++.|+|.+.|++|+|.|++.|..+..........++.++-|. .+..+
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~-----~gt~~ 95 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL-----AGTAP 95 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh-----hCCcc
Confidence 4678999999999999999999999999999999999999999999999887765544444555444333 11222
Q ss_pred HHHHHHHHHhhh----------------hhchHHHHHHh--hCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 239 SSVLSQAVKRGK----------------EQGFDIVLCDT--SGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 239 ~~~~~~~~~~~~----------------~~~~d~vl~dt--~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
...+.+++.-+. ...+...+ .. .|+.+..+.+++-|||||| .++.|..+.|+ +|+|
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l-~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pk--iLLL 172 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERL-ARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPK--ILLL 172 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHH-hhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCc--EEEe
Confidence 222222221110 01111111 22 2556777889999999999 77788889999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceee------eccCcccCCC
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKF------VGVGEGVEDL 358 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~------i~~Ge~v~Dl 358 (372)
|| |+.|||.....+++ .-.++-+ +..-|.++|||.+.-++.| +..|+.|-|+
T Consensus 173 DEHTAALDPkta~~vm~--------lT~kiV~-~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 173 DEHTAALDPKTAEFVME--------LTAKIVE-EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred cchhhcCCcchHHHHHH--------HHHHHHH-hcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99 99999998877776 3333332 3467999999999888654 7789988665
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=8.1e-23 Score=215.99 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=133.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc--CCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~--~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|++...++++|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.+..+ + +....+
T Consensus 73 ~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-----~---~~~~i~- 143 (659)
T PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-----Q---ILKRTG- 143 (659)
T ss_pred cccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-----h---hccceE-
Confidence 3556777777899999999999999999999999999999999999874 8999998766421 1 111222
Q ss_pred ceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccc-----hhhHhHHHHHHH---HHHHH
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTN-----YSLMEELVACKK---AVGKV 285 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~-----~~~~~eLS~G~r---~iAra 285 (372)
+ +.+.....+...+.+.+... ..+.++. +++.+|+.+.. +..+.+||+||| .||++
T Consensus 144 -y-v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 144 -F-VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES-VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred -E-ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 2 44443333222233332211 0111233 34677887654 345678999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC-------ceeeeccCccc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI-------PVKFVGVGEGV 355 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~-------pi~~i~~Ge~v 355 (372)
++.+|+ +|+||| |+|||+..+..+.+ ++.++. ++|.|||+++|+... -+..+..|+.+
T Consensus 221 L~~~P~--iLlLDEPtsgLD~~~~~~l~~--------~L~~l~--~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 221 MLINPS--LLILDEPTSGLDATAAYRLVL--------TLGSLA--QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHhCCC--EEEEeCCCCCcCHHHHHHHHH--------HHHHHH--hCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 999999 999999 99999999988887 888886 458999999999863 25567778765
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.88 E-value=4.6e-23 Score=182.27 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=101.9
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+.+ +.+.....
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------------~~i~~-~~q~~~~~ 76 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------------EDLLF-LPQRPYLP 76 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------------ceEEE-ECCCCccc
Confidence 4678999999999999999999999999999999999999999998531 11112 33322211
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
+ ..+.+.+.. + .+.+||+||+ .+||+++.+|+ +|+||| |+++|+..+..++.
T Consensus 77 ~-~tv~~nl~~--------------~-------~~~~LS~G~~~rv~laral~~~p~--~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 77 L-GTLREQLIY--------------P-------WDDVLSGGEQQRLAFARLLLHKPK--FVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred c-ccHHHHhhc--------------c-------CCCCCCHHHHHHHHHHHHHHcCCC--EEEEECCccccCHHHHHHHHH
Confidence 1 112221110 0 3578999999 99999999999 999999 99999999977776
Q ss_pred hhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 314 DVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 314 ~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++.++ +.++|++||+....
T Consensus 133 --------~l~~~-----~~tiiivsh~~~~~ 151 (166)
T cd03223 133 --------LLKEL-----GITVISVGHRPSLW 151 (166)
T ss_pred --------HHHHh-----CCEEEEEeCChhHH
Confidence 66554 47999999998653
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.5e-23 Score=212.44 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=123.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhH------------
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ------------ 216 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eq------------ 216 (372)
++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. +++...|
T Consensus 6 ~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 6 NITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE--RLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred EEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEEeccCCcCCCCcHHH
Confidence 45566766667899999999999999999999999999999999999999999985421 1111100
Q ss_pred -HHH-----HH---HhhCcceeEeccccccHHHHHHHHHH---h----hhhhchHHHHHHhhCCCccc-hhhHhHHHHHH
Q 017380 217 -LEI-----WA---ERTGCEIVVAEGEKAKASSVLSQAVK---R----GKEQGFDIVLCDTSGRLHTN-YSLMEELVACK 279 (372)
Q Consensus 217 -l~~-----~~---~~~~v~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~ 279 (372)
+.. +. ....+.. ... ........+.+... . .....+..+ ++.+|+.+.. ++++.+||+||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 84 TVIMGHTELWEVKQERDRIYA-LPE-MSEEDGMKVADLEVKFAEMDGYTAEARAGEL-LLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-ccc-cccchHHHHHHHHHHHHhcCchhHHHHHHHH-HHhCCCChhHhcCchhhcCHHH
Confidence 000 00 0000000 000 00000000000000 0 001123333 4677886543 46789999999
Q ss_pred H---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeee
Q 017380 280 K---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFV 349 (372)
Q Consensus 280 r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i 349 (372)
+ +||++++.+|+ +|+||| |++||+..+..+.+ ++. ..+++||++||++... +.++
T Consensus 161 ~qrv~lA~aL~~~p~--lLlLDEPt~~LD~~~~~~l~~--------~l~-----~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 161 KLRVLLAQALFSNPD--ILLLDEPTNNLDINTIRWLED--------VLN-----ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred HHHHHHHHHHhcCCC--EEEEcCCCcccCHHHHHHHHH--------HHH-----hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 9 99999999999 999999 99999999977776 554 2378999999998864 6677
Q ss_pred ccCccc
Q 017380 350 GVGEGV 355 (372)
Q Consensus 350 ~~Ge~v 355 (372)
.+|+.+
T Consensus 226 ~~g~i~ 231 (530)
T PRK15064 226 DYGELR 231 (530)
T ss_pred eCCEEE
Confidence 888763
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=3.2e-23 Score=185.06 Aligned_cols=128 Identities=17% Similarity=0.102 Sum_probs=103.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
.++.+.|+...++.+ +|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+ +.
T Consensus 4 ~~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------------i~ 64 (177)
T cd03222 4 PDCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------------PV 64 (177)
T ss_pred CCeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------------EE
Confidence 456677776666666 48999999999999999999999999999999999999996532 11
Q ss_pred eeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGL 303 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsgl 303 (372)
+ +.+... ||+||+ ++||+++.+|+ +++||| |+++
T Consensus 65 ~-~~q~~~---------------------------------------LSgGq~qrv~laral~~~p~--lllLDEPts~L 102 (177)
T cd03222 65 Y-KPQYID---------------------------------------LSGGELQRVAIAAALLRNAT--FYLFDEPSAYL 102 (177)
T ss_pred E-EcccCC---------------------------------------CCHHHHHHHHHHHHHhcCCC--EEEEECCcccC
Confidence 1 111000 999999 99999999999 999999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+..+..+.. ++.++.. ..+.++|++||++...
T Consensus 103 D~~~~~~l~~--------~l~~~~~-~~~~tiiivsH~~~~~ 135 (177)
T cd03222 103 DIEQRLNAAR--------AIRRLSE-EGKKTALVVEHDLAVL 135 (177)
T ss_pred CHHHHHHHHH--------HHHHHHH-cCCCEEEEEECCHHHH
Confidence 9999987777 7777642 2248999999998764
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=4.9e-23 Score=209.17 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=124.0
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.+.. . ..+. .......+
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~-~---------~~~l---~~~lTV~E 104 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA-I---------SSGL---NGQLTGIE 104 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEE-e---------cccc---CCCCcHHH
Confidence 357899999999999999999999999999999999999999999976542100 0 0000 00000000
Q ss_pred HHHHHHH--HHHhh-hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHH
Q 017380 238 ASSVLSQ--AVKRG-KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAR 310 (372)
Q Consensus 238 ~~~~~~~--~~~~~-~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~ 310 (372)
....... ..... ..+..+. +++.+|+.+..++.+.+||+||+ +||||++.+|+ +|+||| |+|||+..+..
T Consensus 105 nL~l~~~~~~~~~~e~~e~i~e-lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~--LLLLDEPTsgLD~~sr~~ 181 (549)
T PRK13545 105 NIELKGLMMGLTKEKIKEIIPE-IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD--ILVIDEALSVGDQTFTKK 181 (549)
T ss_pred HHHhhhhhcCCCHHHHHHHHHH-HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC--EEEEECCcccCCHHHHHH
Confidence 0000000 00000 0011222 34677888778889999999999 99999999999 999999 99999999988
Q ss_pred HHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 311 ~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
++. +|..+. ..|++||++||+++.. +.++.+|+.+.
T Consensus 182 Lle--------lL~el~--~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 182 CLD--------KMNEFK--EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred HHH--------HHHHHH--hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 777 777775 4588999999998754 56777887763
No 316
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.88 E-value=5.6e-23 Score=215.04 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=133.1
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|.+ ...++++||++++|+.++|+|+||||||||++.|+|+++|++|+|.++|.|.-... ...+.+..
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~i 419 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT----LASLRNQV 419 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC----HHHHHhhc
Confidence 3456666754 34789999999999999999999999999999999999999999999877652221 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh-----hhchHHHHHHhhCCC-----------ccchhhHhHHHHHHH---HHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK-----EQGFDIVLCDTSGRL-----------HTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vl~dt~G~~-----------~~~~~~~~eLS~G~r---~iAra 285 (372)
++ +++++...+. .+.+++.... .+++...+ +.+|+. ........+|||||| +||||
T Consensus 420 ~~---v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al-~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 420 AL---VSQNVHLFND-TIANNIAYARTEQYSREQIEEAA-RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred eE---EccCceeecc-hHHHHHhcCCCCCCCHHHHHHHH-HHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 33 5555544433 3344443211 11122221 233322 112233456999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+..+|+ +|+||| |+++|+.+..+++. .+.++. ++.|+|+|||++... |.++.+|+.+++
T Consensus 495 ll~~~~--ililDEptsaLD~~t~~~i~~--------~l~~~~---~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 495 LLRDSP--ILILDEATSALDTESERAIQA--------ALDELQ---KNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred HHhCCC--EEEEECccccCCHHHHHHHHH--------HHHHHh---CCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 999999 999999 99999999988877 565553 468999999998764 667888988753
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.6e-23 Score=212.93 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=125.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. +.+..
T Consensus 323 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~--~i~~~------------- 387 (530)
T PRK15064 323 ENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA--NIGYY------------- 387 (530)
T ss_pred EeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce--EEEEE-------------
Confidence 455666665567899999999999999999999999999999999999999999985421 11111
Q ss_pred eeEecccc--ccHHHHHHHHHHh----h-hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 228 IVVAEGEK--AKASSVLSQAVKR----G-KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 228 ~~~~~~~~--~~~~~~~~~~~~~----~-~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
.+... ..+...+.+.+.. . ....+..+ ++.+|+. +..++++.+||+||+ +||++++.+|+ +|+
T Consensus 388 ---~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~--lll 461 (530)
T PRK15064 388 ---AQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGT-LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN--VLV 461 (530)
T ss_pred ---cccccccCCCCCcHHHHHHHhccCCccHHHHHHH-HHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCC--EEE
Confidence 11110 0000011111110 0 11122333 3677874 567889999999999 99999999999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
||| |+|||+..+..+.. ++.++ +++||++|||.... +..+.+|+.+
T Consensus 462 LDEPt~~LD~~~~~~l~~--------~l~~~-----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 462 MDEPTNHMDMESIESLNM--------ALEKY-----EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred EcCCCCCCCHHHHHHHHH--------HHHHC-----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999 99999999977776 66655 35999999999764 5567778765
No 318
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.88 E-value=5.1e-23 Score=219.34 Aligned_cols=187 Identities=17% Similarity=0.145 Sum_probs=133.3
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|++ ..+++|+||++++|+.++|+|+|||||||+++.|+|++.|++|+|.++|.|..... ...+.+..
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~lr~~i 529 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD----VQAVRRQL 529 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC----HHHHHhcc
Confidence 3567777743 35789999999999999999999999999999999999999999999887764322 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh---hhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK---EQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral~ 287 (372)
++ +.+++...+. .+++++.... .+++..++ +.+|+.+ ........|||||| +||||+.
T Consensus 530 ~~---v~Q~~~lf~g-TI~eNi~~~~~~~~e~i~~al-~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 530 GV---VLQNGRLMSG-SIFENIAGGAPLTLDEAWEAA-RMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred EE---EccCCccCcc-cHHHHHhcCCCCCHHHHHHHH-HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 33 5555544432 2344433221 11122222 2333322 12233457999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
.+|+ +|+||| |+++|+.++.++++ .+.++ +.|+|+|||++... +..+.+|+.+++
T Consensus 605 ~~p~--iLiLDEpTS~LD~~te~~i~~--------~L~~~-----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 605 RKPR--ILLFDEATSALDNRTQAIVSE--------SLERL-----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred cCCC--EEEEeCCccCCCHHHHHHHHH--------HHHHh-----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 9999 999999 99999999988777 45544 46999999998764 667888988854
No 319
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=204.64 Aligned_cols=188 Identities=19% Similarity=0.237 Sum_probs=137.9
Q ss_pred HHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|++. ..++|+||++++|+.++|||+|||||||+++.|+|+++|++|+|.+++.+..... ...|.+.+..
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~----~~~~~k~i~~ 399 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS----PEAWRKQISW 399 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC----HHHHHhHeee
Confidence 4777888764 6789999999999999999999999999999999999999999999877653221 1234343332
Q ss_pred ceeEeccccccHHHHHHHHHHhhhh----hchHHHHHHhhCCCccc------hhhHh----HHHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTSGRLHTN------YSLME----ELVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~G~~~~~------~~~~~----eLS~G~r---~iAral~~~ 289 (372)
+.+.+...+.. +++++..+.. +.+..++ |.+|+.+.. +..++ .||+||+ ++|||+..+
T Consensus 400 ---v~Q~p~lf~gT-ireNi~l~~~~~s~e~i~~al-~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 400 ---VSQNPYLFAGT-IRENILLARPDASDEEIIAAL-DQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred ---eCCCCcccccc-HHHHhhccCCcCCHHHHHHHH-HHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 55555544433 3344322211 2222222 334443221 23334 4999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
++ ++++|| |+++|..+...+.+ .+.++. ++.|+|++||++... |.++.+|+.++.
T Consensus 475 ~~--l~llDEpTA~LD~etE~~i~~--------~l~~l~---~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 475 AS--LLLLDEPTAHLDAETEQIILQ--------ALQELA---KQKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred CC--EEEecCCccCCCHhHHHHHHH--------HHHHHH---hCCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 99 999999 99999999977777 777774 579999999999875 778999998853
No 320
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.87 E-value=1.2e-22 Score=211.92 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=137.7
Q ss_pred HHHHHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 145 ALKNSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 145 ~l~~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
+..+++...|+ +...++|+||++++|+.++|||||||||||+++.|++++.|++|+|.++|.|..... ...+.+.
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~----~~~lr~~ 404 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS----LDSLRKR 404 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcC----HHHHHHh
Confidence 34467777887 457889999999999999999999999999999999999999999999777764332 2233344
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
.++ +.|++.... ..+.+++... +.......+.... |+..........|||||| +||||+
T Consensus 405 I~~---V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 405 IGI---VSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred ccE---Ecccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH
Confidence 443 455544433 2233333322 1122233332222 333334455568999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC-----ceeeeccCcccCC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI-----PVKFVGVGEGVED 357 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~-----pi~~i~~Ge~v~D 357 (372)
..+|+ +||||| |+++|+.+...+.+ .+.++. ++.|+|+|+|++.. -|.++.+|+.++.
T Consensus 481 l~~~~--ILILDEaTSalD~~tE~~I~~--------~l~~l~---~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 481 LRNPP--ILILDEATSALDTETEALIQD--------ALKKLL---KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred hcCCC--EEEEeccccccCHHhHHHHHH--------HHHHHh---cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 99999 999999 99999999988877 444442 35699999999854 3778999997653
No 321
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=9.6e-23 Score=215.67 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=137.1
Q ss_pred HHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 149 SVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 149 ~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++.+.|+. ...++++||++++|++++|+||||+|||||+++|+|+++|++|+|.+++.+.......+......+..
T Consensus 9 nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i 88 (648)
T PRK10535 9 DIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHF 88 (648)
T ss_pred eEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccE
Confidence 45556642 24688999999999999999999999999999999999999999999887654432211111111122
Q ss_pred CcceeEeccccccHHHHHHHHHHh---------h-hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKR---------G-KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+ + +.+.....+...+.+.+.. . ....... +++.+|+.+..+..+.+||+||+ .|||+++.+|+
T Consensus 89 ~--~-v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~ 164 (648)
T PRK10535 89 G--F-IFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQE-LLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164 (648)
T ss_pred E--E-EeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2 2 3444332221111111110 0 0112233 34678888888899999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+|+||| |+|+|+..+..+.+ ++.++. .++.++|++||+.+.+ +..+.+|+.+
T Consensus 165 --lLllDEP~~gLD~~s~~~l~~--------ll~~l~--~~g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 165 --VILADEPTGALDSHSGEEVMA--------ILHQLR--DRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred --EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hcCCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988877 888875 4589999999999876 4556777665
No 322
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=5.7e-22 Score=211.59 Aligned_cols=199 Identities=18% Similarity=0.168 Sum_probs=141.2
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|++ ...++++||++++|+.++|+|+|||||||+++.|+|+++|++|+|.+++.|..... ...+.+.+
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~----~~~lr~~i 541 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID----PADLRRNI 541 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHHHhcc
Confidence 3566677753 34689999999999999999999999999999999999999999999887753322 22233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCC-----------ccchhhHhHHHHHHH---HHHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRL-----------HTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~-----------~~~~~~~~eLS~G~r---~iAral 286 (372)
++ +.+.+...+. .+++++.... .+++...+ +.+|+. ....+....|||||| +||||+
T Consensus 542 ~~---v~Q~~~lf~~-TI~eNi~~~~~~~~~~~i~~a~-~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 542 GY---VPQDPRLFYG-TLRDNIALGAPYADDEEILRAA-ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred EE---ECCChhhhhh-hHHHHHhCCCCCCCHHHHHHHH-HHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 33 5565554443 3444443221 11111122 233332 222334457999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCCCCC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVEDLQP 360 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~Dl~~ 360 (372)
..+|+ +|+||| |+++|+..+.++.+ .+.++. ++.|+|+|||++... +.++.+|+.++.-
T Consensus 617 l~~p~--iliLDE~Ts~LD~~te~~i~~--------~l~~~~---~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G-- 681 (694)
T TIGR03375 617 LRDPP--ILLLDEPTSAMDNRSEERFKD--------RLKRWL---AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG-- 681 (694)
T ss_pred hcCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHh---CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC--
Confidence 99999 999999 99999999988877 666653 478999999999865 6678889887543
Q ss_pred CCHHHHHHHh
Q 017380 361 FDAEAFVNAI 370 (372)
Q Consensus 361 ~~~~~~v~~l 370 (372)
+.+++.+..
T Consensus 682 -~~~eLl~~~ 690 (694)
T TIGR03375 682 -PKDQVLEAL 690 (694)
T ss_pred -CHHHHHHHh
Confidence 566666554
No 323
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.1e-21 Score=169.04 Aligned_cols=208 Identities=19% Similarity=0.236 Sum_probs=143.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec-----cccchhhhhHHHHHHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG-----DTFRAAASDQLEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~-----d~~r~~a~eql~~~~~ 222 (372)
.++++.|++....+++||++.|||+.+|||.+||||||++++|++.+.|+.|+|.+... |.|+.+..+.....
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~-- 87 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLL-- 87 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHh--
Confidence 57899999988899999999999999999999999999999999999999999999653 44554433322211
Q ss_pred hhCcceeEecccc--------------ccHHHHHHHHHHhhhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEK--------------AKASSVLSQAVKRGKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAr 284 (372)
+....+ +.+.+. ....++-.+.+... ......++ +.+.+. ...+..+..+|||++ .|||
T Consensus 88 RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~i-R~~a~~WL-~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 88 RTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-RAEAQDWL-EEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred hhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhH-HHHHHHHH-HhcccCcccccCcccccchHHHHHHHHHH
Confidence 122222 222221 00111100111100 01122233 344443 345778899999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc--
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV-- 355 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v-- 355 (372)
-|+..|. ++++|| |.|+|...|++++. +++.+-. +-+-+++++|||+.++ ...+..|+.+
T Consensus 165 nLVt~Pr--LvfMDEPTGGLDVSVQARLLD--------llrgLv~-~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 165 NLVTRPR--LVFMDEPTGGLDVSVQARLLD--------LLRGLVR-ELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HhccCCc--eEEecCCCCCcchhhHHHHHH--------HHHHHHH-hcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999 999999 99999999999988 7777653 4578999999999886 3455556543
Q ss_pred -------CCCCCCCHHHHHHHhc
Q 017380 356 -------EDLQPFDAEAFVNAIF 371 (372)
Q Consensus 356 -------~Dl~~~~~~~~v~~l~ 371 (372)
+|-+...-.-+|++++
T Consensus 234 GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred ccccccccCCCCchHHHHHHHhc
Confidence 5555555566666654
No 324
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=4e-22 Score=215.33 Aligned_cols=191 Identities=19% Similarity=0.212 Sum_probs=139.6
Q ss_pred HHHHHHHHhccCC---CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 146 LKNSVLDLLTKKG---NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 146 l~~~l~~~~~~~~---~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
..+++...|...+ .++++||.+++|+.++|||||||||||++.+|.++|.|++|+|.++|.|.... +.+.+..
T Consensus 352 ef~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~----~~~~lr~ 427 (1228)
T KOG0055|consen 352 EFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL----NLKWLRS 427 (1228)
T ss_pred EEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc----chHHHHh
Confidence 3467777887653 57899999999999999999999999999999999999999999998886432 2344445
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
++|+ +.|.+..+.. .+.+++... +..+....+.... |....-...--+|||||| +||||
T Consensus 428 ~igl---V~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 428 QIGL---VSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hcCe---eeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 5555 6666644332 233333222 2223333332222 222233344457999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
|+.+|+ +|+||| |++||+.++..+.. .|.+. .+|.|.|+|+|++.-. +.++.+|+.||-
T Consensus 504 lv~~P~--ILLLDEaTSaLD~~se~~Vq~--------ALd~~---~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 504 LVRNPK--ILLLDEATSALDAESERVVQE--------ALDKA---SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHhCCC--EEEecCcccccCHHHHHHHHH--------HHHHh---hcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 999999 999999 99999999965555 55444 6789999999999764 889999999853
No 325
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=7e-23 Score=214.00 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=118.9
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++. .+++++|++.+|++++|+||||+|||||+++|+|+++|++|+|.+. .+.+...|
T Consensus 345 ~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q------------ 407 (590)
T PRK13409 345 DLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQ------------ 407 (590)
T ss_pred ceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecc------------
Confidence 344444432 2567889999999999999999999999999999999999999873 12221111
Q ss_pred eEeccccccHHHHHHHHHHhh-----hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-----KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
.....+...+.+.+... ....... +++.+|+.+..++.+.+||+||+ +||++++.+|+ +|+|||
T Consensus 408 ----~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~--llLLDEP 480 (590)
T PRK13409 408 ----YIKPDYDGTVEDLLRSITDDLGSSYYKSE-IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDAD--LYLLDEP 480 (590)
T ss_pred ----cccCCCCCcHHHHHHHHhhhcChHHHHHH-HHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Confidence 11000001111111100 0111223 34678888778899999999999 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+|||+.++..+.. +|.++.. ..|+++|++|||+...
T Consensus 481 t~~LD~~~~~~l~~--------~l~~l~~-~~g~tviivsHD~~~~ 517 (590)
T PRK13409 481 SAHLDVEQRLAVAK--------AIRRIAE-EREATALVVDHDIYMI 517 (590)
T ss_pred ccCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEeCCHHHH
Confidence 99999999988887 8888853 3588999999999875
No 326
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1.2e-22 Score=212.44 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=134.4
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|++ ...++|+||++++|++++|+|||||||||+++.|+|+++|++|+|.+++.|..... ...+.+..
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i 416 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS----EAALRQAI 416 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHHHhhe
Confidence 4567777754 34789999999999999999999999999999999999999999999887653321 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCccc----------hhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLHTN----------YSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~~----------~~~~~eLS~G~r---~iAral~ 287 (372)
++ +.+++...+. .+.+++.... .+++...+ +.+|+.+.. ......||+||| +||||++
T Consensus 417 ~~---v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~al-~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 417 SV---VSQRVHLFSA-TLRDNLLLAAPNASDEALIEVL-QQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred eE---Ecccchhhcc-cHHHHhhcCCCccCHHHHHHHH-HHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 33 5555544332 3344443221 11222222 344543322 234557999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+++|+.++..+.+ .+.++. ++.|+|+++|++... +..+.+|+.++
T Consensus 492 ~~~~--ililDE~ts~lD~~t~~~i~~--------~l~~~~---~~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 492 HDAP--LLLLDEPTEGLDAETERQILE--------LLAEHA---QNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred cCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHc---CCCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 9999 999999 99999999987777 666653 478999999998764 55677888774
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=1.8e-22 Score=210.12 Aligned_cols=189 Identities=21% Similarity=0.227 Sum_probs=122.7
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH------H
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI------W 220 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~------~ 220 (372)
+++.+.|+ ....++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. .+++...|-.. .
T Consensus 8 ~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv 85 (552)
T TIGR03719 8 NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQLDPTKTV 85 (552)
T ss_pred eeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCCCCCCcH
Confidence 45666776 556789999999999999999999999999999999999999999988431 11111111000 0
Q ss_pred HHhhCccee-E-------------ecccccc------HHHHHHHHHHhhh----hhchHHHHHHhhCCCccchhhHhHHH
Q 017380 221 AERTGCEIV-V-------------AEGEKAK------ASSVLSQAVKRGK----EQGFDIVLCDTSGRLHTNYSLMEELV 276 (372)
Q Consensus 221 ~~~~~v~~~-~-------------~~~~~~~------~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~~~~~~~eLS 276 (372)
.+.+..... . ....... ....+.+.+.... ...+.. +++.+|+.. .+..+.+||
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~-~~~~~~~LS 163 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI-AMDALRCPP-WDADVTKLS 163 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHH-HHhhCCCCc-ccCchhhcC
Confidence 000000000 0 0000000 0000000000000 011222 335667743 577899999
Q ss_pred HHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------e
Q 017380 277 ACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------V 346 (372)
Q Consensus 277 ~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i 346 (372)
+||+ +||++++.+|+ +|+||| |++||+..+..+.+ +|.++ +++||++||+.+.. +
T Consensus 164 gGqkqrv~la~al~~~p~--lLLLDEPt~~LD~~~~~~l~~--------~L~~~-----~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPD--MLLLDEPTNHLDAESVAWLEQ--------HLQEY-----PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred HHHHHHHHHHHHHhcCCC--EEEEcCCCCCCChHHHHHHHH--------HHHhC-----CCeEEEEeCCHHHHHhhcCeE
Confidence 9999 99999999999 999999 99999999987776 66654 25999999998764 5
Q ss_pred eeeccCccc
Q 017380 347 KFVGVGEGV 355 (372)
Q Consensus 347 ~~i~~Ge~v 355 (372)
.++.+|+.+
T Consensus 229 ~~l~~g~i~ 237 (552)
T TIGR03719 229 LELDRGRGI 237 (552)
T ss_pred EEEECCEEE
Confidence 677888754
No 328
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=1.8e-22 Score=215.95 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=132.9
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ..+++|+||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|..... ...+.+..+
T Consensus 481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~lr~~i~ 556 (710)
T TIGR03796 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP----REVLANSVA 556 (710)
T ss_pred EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC----HHHHHhhee
Confidence 566677764 35789999999999999999999999999999999999999999999887753221 123334444
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCC-----------CccchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGR-----------LHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~-----------~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.|.+...+. .+++++.... .+++...+ +.+|+ ..........|||||| +||||+.
T Consensus 557 ~---v~Q~~~lf~g-Ti~eNi~l~~~~~~~~~i~~al-~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 557 M---VDQDIFLFEG-TVRDNLTLWDPTIPDADLVRAC-KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred E---EecCChhhhc-cHHHHhhCCCCCCCHHHHHHHH-HHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 3 5555544433 2344443211 11111111 22232 2222334457999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
.+|+ +|+||| |+++|...+.++++ .+.+ .+.|+|+|||++... +.++.+|+.+++
T Consensus 632 ~~p~--iliLDEptS~LD~~te~~i~~--------~l~~-----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 632 RNPS--ILILDEATSALDPETEKIIDD--------NLRR-----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred hCCC--EEEEECccccCCHHHHHHHHH--------HHHh-----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 9999 999999 99999999988877 3432 368999999998764 667889988853
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=213.32 Aligned_cols=176 Identities=22% Similarity=0.184 Sum_probs=126.0
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+... .+.+...|-.. . .+
T Consensus 316 ~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~--~--~l- 388 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQL--E--FL- 388 (638)
T ss_pred EeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcch--h--hC-
Confidence 45666676656789999999999999999999999999999999999999999998421 12232222100 0 00
Q ss_pred eeEeccccccHHHHHHHHHH----hhhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 228 IVVAEGEKAKASSVLSQAVK----RGKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
.+...+.+.+. ......+..++ +.+|+.. ..++++.+||||++ +||++++.+|+ +|||||
T Consensus 389 ---------~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~--lLlLDE 456 (638)
T PRK10636 389 ---------RADESPLQHLARLAPQELEQKLRDYL-GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN--LLLLDE 456 (638)
T ss_pred ---------CccchHHHHHHHhCchhhHHHHHHHH-HHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC--EEEEcC
Confidence 00000111110 00111233333 5778753 56789999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+|||+..+..+.+ +|..+ +++||+||||.... +.++.+|+.+
T Consensus 457 Pt~~LD~~~~~~l~~--------~L~~~-----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 457 PTNHLDLDMRQALTE--------ALIDF-----EGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CCCCCCHHHHHHHHH--------HHHHc-----CCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999977777 66665 35999999998764 5567788764
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.87 E-value=1.2e-22 Score=211.08 Aligned_cols=189 Identities=14% Similarity=0.075 Sum_probs=128.9
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|.+ ...++++||++++|+.++|+||||||||||++.|+|+++|++|+|.+++.|..... ...+.+..+
T Consensus 326 ~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~- 400 (547)
T PRK10522 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ----PEDYRKLFS- 400 (547)
T ss_pred EEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC----HHHHhhheE-
Confidence 456666653 34689999999999999999999999999999999999999999999887753321 122323332
Q ss_pred ceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchh-----hHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYS-----LMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~-----~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+ +.+++...+... .+.-.....+.....+ +.+|+...... ...+|||||+ +||||++.+|+ +|+||
T Consensus 401 -~-v~q~~~lf~~ti-~~n~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~--ililD 474 (547)
T PRK10522 401 -A-VFTDFHLFDQLL-GPEGKPANPALVEKWL-ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD--ILLLD 474 (547)
T ss_pred -E-EecChhHHHHhh-ccccCchHHHHHHHHH-HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEE
Confidence 2 455443333221 1110001111222223 45555432211 1347999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
| |+++|+.....+.+ .+.+... ..+.|+|+++|+.... +..+.+|+.++
T Consensus 475 E~ts~LD~~~~~~i~~--------~l~~~~~-~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 475 EWAADQDPHFRREFYQ--------VLLPLLQ-EMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCCCCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 9 99999999877766 4433211 2478999999998654 66788898774
No 331
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=9.6e-23 Score=180.32 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=140.6
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee-ccccchhhhhHHH-HHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA-GDTFRAAASDQLE-IWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~-~d~~r~~a~eql~-~~~~~~~ 225 (372)
++++-.|+...+++++||++.+|+.-+||||||+||||++..|.|.-+|+.|+|++.+ .|..+....+..+ -.++.++
T Consensus 9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ 88 (249)
T COG4674 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ 88 (249)
T ss_pred eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCcccc
Confidence 4566678888889999999999999999999999999999999999999999999987 5655443322111 1233333
Q ss_pred cceeEeccccccHHHHHH-------HH----HHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 226 CEIVVAEGEKAKASSVLS-------QA----VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
.|-.+......++...+. .. ......++++.+| .+.|+.+..+.....||.||+ .|++.++++|+
T Consensus 89 ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~L-a~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~ 167 (249)
T COG4674 89 KPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELL-ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPK 167 (249)
T ss_pred CCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHH-HHcccchhhhhhhhhhccchhhhhhhheeeccCCc
Confidence 333111111111111110 00 0111234567666 588999999999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| ++|+-.....+.-. ++..+. ...+|++|.|||++. +..+..|+..
T Consensus 168 --lLLlDEPvAGMTd~Et~~tae--------Ll~~la---~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 168 --LLLLDEPVAGMTDAETEKTAE--------LLKSLA---GKHSILVVEHDMGFVREIADKVTVLHEGSVL 225 (249)
T ss_pred --EEEecCccCCCcHHHHHHHHH--------HHHHHh---cCceEEEEeccHHHHHHhhheeEEEecccee
Confidence 999999 99997666655555 777774 468999999999985 6667777765
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=3.4e-22 Score=193.25 Aligned_cols=188 Identities=19% Similarity=0.278 Sum_probs=145.9
Q ss_pred cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-----cCCeEEEeeccccchhhhhHHHHHHHhhCcceeE
Q 017380 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-----EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVV 230 (372)
Q Consensus 156 ~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-----~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~ 230 (372)
...+++++||++.+||.+++||.+|||||-+...+.++++. -+|+|.+.|.|.......+.....+.++++ +
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M---I 98 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM---I 98 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE---E
Confidence 34568999999999999999999999999999999999974 368999999998776554444455566655 3
Q ss_pred eccc--cccHHHHHH----HHHHh------hhhhchHHHHHHhhCCCc---cchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 231 AEGE--KAKASSVLS----QAVKR------GKEQGFDIVLCDTSGRLH---TNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 231 ~~~~--~~~~~~~~~----~~~~~------~~~~~~d~vl~dt~G~~~---~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
++.+ ..+|...+. +.+.. ...+....-+.+.+|+.+ ..+.++.||||||| .||+||+++|+
T Consensus 99 FQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~- 177 (534)
T COG4172 99 FQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD- 177 (534)
T ss_pred ecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC-
Confidence 4433 344443332 22211 112222333557889864 35789999999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+||.|| |+.||..-|+++++ ++.++.. +.|.++++||||+++. |..+..|+.||.
T Consensus 178 -lLIADEPTTALDVtvQaQIL~--------Ll~~Lq~-~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 178 -LLIADEPTTALDVTVQAQILD--------LLKELQA-ELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred -eEeecCCcchhhhhhHHHHHH--------HHHHHHH-HhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 999999 99999999999998 9999974 6799999999999986 778899999853
No 333
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.87 E-value=1.5e-22 Score=216.53 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=134.1
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|+. ...++|+||++++|+.++|+|||||||||+++.|+|++.|++|+|.++|.|..... ...+.+..++
T Consensus 477 ~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~lr~~i~~ 552 (708)
T TIGR01193 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID----RHTLRQFINY 552 (708)
T ss_pred EEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC----HHHHHHheEE
Confidence 566777753 45789999999999999999999999999999999999999999999887753221 2233344433
Q ss_pred ceeEeccccccHHHHHHHHHHhh-h----hhchHHHHHHhhCCC-----------ccchhhHhHHHHHHH---HHHHHHh
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRG-K----EQGFDIVLCDTSGRL-----------HTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~d~vl~dt~G~~-----------~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+.+.+...+. .+++++... . .+++...+ +.+|+. .........|||||| +||||++
T Consensus 553 ---v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~-~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 553 ---LPQEPYIFSG-SILENLLLGAKENVSQDEIWAAC-EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred ---EecCceehhH-HHHHHHhccCCCCCCHHHHHHHH-HHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 5666555443 344444322 0 11111111 233332 222334467999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
.+|+ +|+||| |+++|+..+..+.+ .+.++ ++.|+|+|+|++... +..+.+|+.+++
T Consensus 628 ~~p~--iliLDE~Ts~LD~~te~~i~~--------~L~~~----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 628 TDSK--VLILDESTSNLDTITEKKIVN--------NLLNL----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred hCCC--EEEEeCccccCCHHHHHHHHH--------HHHHh----cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 9999 999999 99999999877777 55543 368999999999865 667788988753
No 334
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=1.8e-22 Score=211.45 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=131.6
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|++ ...++++||++++|++++|+|||||||||+++.|+|+++|++|+|.+++.+..... ...+.+..++
T Consensus 338 ~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~~ 413 (585)
T TIGR01192 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT----RESLRKSIAT 413 (585)
T ss_pred EEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC----HHHHHhheEE
Confidence 566777764 34689999999999999999999999999999999999999999999776643221 1122233322
Q ss_pred ceeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.+.+...+. .+.+++.... ....+..+.+.. |+..........|||||| +||||++.+
T Consensus 414 ---v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 414 ---VFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred ---EccCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4444433322 2333332211 011111221111 333333455678999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+++|+..+..+.+ .+.++. ++.|+|++||+.... +..+.+|+.++
T Consensus 490 p~--ililDEpts~LD~~~~~~i~~--------~l~~~~---~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 490 AP--ILVLDEATSALDVETEARVKN--------AIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549 (585)
T ss_pred CC--EEEEECCccCCCHHHHHHHHH--------HHHHHh---CCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 99 999999 99999999977777 666653 478999999998664 56778887764
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=1.7e-22 Score=210.19 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=118.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+ +.+. +++.
T Consensus 326 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~-~i~~-------------- 389 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETV-KLAY-------------- 389 (552)
T ss_pred eeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCce-EEEE--------------
Confidence 45555666556788999999999999999999999999999999999999999988 4321 2221
Q ss_pred eeEeccc-cccHHHHHHHHHHhh--------hhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGE-KAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.+.. ...+...+.+.+... ...... .+++.+|+.+ ..++.+.+||+||+ .||++++.+|+ +
T Consensus 390 --v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~--l 464 (552)
T TIGR03719 390 --VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR-AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN--V 464 (552)
T ss_pred --EeCCccccCCCCcHHHHHHhhccccccCcchHHHH-HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC--E
Confidence 11111 011111111111110 001122 2456788864 45788999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+||| |+|||+..+..+.. +|.++. ++||++|||+...
T Consensus 465 llLDEPt~~LD~~~~~~l~~--------~l~~~~-----~~viivsHd~~~~ 503 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEE--------ALLEFA-----GCAVVISHDRWFL 503 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHH--------HHHHCC-----CeEEEEeCCHHHH
Confidence 99999 99999999988877 777662 4899999999864
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=2.4e-22 Score=212.32 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=123.0
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+ +.+. +++.+.|-.
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~--------- 391 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHR--------- 391 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCcc---------
Confidence 46666776655789999999999999999999999999999999999999999988 4331 222221100
Q ss_pred eeEeccccccHHHHHHHHHHhh--------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
....+...+.+.+... ....+..+ ++.+|+. +..++++.+||+||| +||++++.+|+ +|
T Consensus 392 ------~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~--lL 462 (635)
T PRK11147 392 ------AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY-LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN--LL 462 (635)
T ss_pred ------cccCCCCCHHHHHHhhcccccccchHHHHHHH-HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 0011111111111100 01112223 3566775 356788999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeec-cCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVG-VGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~-~Ge~v 355 (372)
+||| |+|||+..+..+.. ++..+ +++||+||||.... +.++. +|+.+
T Consensus 463 lLDEPt~~LD~~~~~~l~~--------~l~~~-----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEE--------LLDSY-----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred EEcCCCCCCCHHHHHHHHH--------HHHhC-----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 9999 99999999866665 66554 46999999998764 55665 67654
No 337
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.87 E-value=7e-22 Score=205.35 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=132.0
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ...++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.+++.+...... ..+.+..+
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~----~~~~~~i~ 395 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR----ETFGKHIG 395 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH----HHHhhheE
Confidence 456666743 356899999999999999999999999999999999999999999998776533211 12222222
Q ss_pred cceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.+.+...+. .+++++... +..+.+..+ +.. |+.....+....||+||| +||||+.
T Consensus 396 ~---v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 396 Y---LPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELI-LRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred E---ecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHH-HhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 2 4444333332 223333211 011122222 122 333344455678999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
.+|+ +|+||| |+++|+..+..+.+ .+.++. .++.++|+++|++..+ +..+.+|+.++.
T Consensus 471 ~~~~--ililDEpts~LD~~~~~~i~~--------~l~~~~--~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 471 GDPK--LVVLDEPNSNLDEEGEQALAN--------AIKALK--ARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred cCCC--EEEEeCCccccCHHHHHHHHH--------HHHHHh--hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 9999 999999 99999999877777 666663 3578999999998765 556778887653
No 338
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6e-22 Score=197.72 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=138.0
Q ss_pred HHHHHHHHHhccCC--CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 145 ALKNSVLDLLTKKG--NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 145 ~l~~~l~~~~~~~~--~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+..++++..|.+.. +++|+||++++||.++|+|++||||||++..|+|.+.|++|+|.+.+.++..... +.+.+
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~----~~~~e 412 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE----QALRE 412 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh----hhHHH
Confidence 45678999998754 7999999999999999999999999999999999999999999998887643221 11223
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhhhhc----hHHHHHHhhCCC-----------ccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGKEQG----FDIVLCDTSGRL-----------HTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~vl~dt~G~~-----------~~~~~~~~eLS~G~r---~iAr 284 (372)
.+++ +.|....+. ..+.+++.-+.... ...++ +.+|+. ...+.-...|||||+ +|||
T Consensus 413 ~i~v---l~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL-~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 413 TISV---LTQRVHLFS-GTLRDNLRLANPDASDEELWAAL-QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred HHhh---hccchHHHH-HHHHHHHhhcCCCCCHHHHHHHH-HHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 3333 233332222 23344443322211 11112 233443 333444568999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCCC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVEDL 358 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~Dl 358 (372)
++.++.+ +++||| |.|||+....+++.. ++.. .+|+|+|+|||++--. |.++.+|+.+++-
T Consensus 488 ~LL~dap--l~lLDEPTegLD~~TE~~vL~l-------l~~~----~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 488 ALLHDAP--LWLLDEPTEGLDPITERQVLAL-------LFEH----AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred HHHcCCC--eEEecCCcccCChhhHHHHHHH-------HHHH----hcCCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence 9999999 999999 999999999888773 3333 4589999999998653 7799999988654
No 339
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=1.1e-22 Score=217.51 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=129.7
Q ss_pred HHHHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 146 LKNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 146 l~~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
-.+++...|++ ..+++|+||++++|++++||||||+||||+++.|+|+++|++|+|.++|.|..... ...+.+
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~----~~~lr~ 555 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD----HHYLHR 555 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC----HHHHHh
Confidence 34567777753 34789999999999999999999999999999999999999999999887653221 122333
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCC-----------CccchhhHhHHHHHHH---HHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGR-----------LHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~-----------~~~~~~~~~eLS~G~r---~iAr 284 (372)
.+++ +.|++...+. .+++++.... .+++..++ +.+|+ .........+|||||| +|||
T Consensus 556 ~i~~---v~Q~~~lF~g-TIreNI~~g~~~~~~e~i~~al-~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 556 QVAL---VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAA-KAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred hceE---EecCcccccc-CHHHHHhcCCCCCCHHHHHHHH-HHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 3332 5555544332 2334433221 11111111 22232 2222333457999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
|+..+|+ +|+||| |+++|+.....+.+ ... .++.|+|+|+|++... +.++.+|+.+++
T Consensus 631 ALl~~p~--ILILDEpTSaLD~~te~~i~~------------~~~-~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 631 ALVRKPR--VLILDEATSALDAECEQLLQE------------SRS-RASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred HHhcCCC--EEEEEccccccCHHHHHHHHH------------hhc-cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999 999999 99999987754443 111 3578999999998765 567888988753
No 340
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-22 Score=196.68 Aligned_cols=190 Identities=15% Similarity=0.139 Sum_probs=132.3
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-----hcCCeEEEeeccccchhhhhHHHH
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-----NEGAKILMAAGDTFRAAASDQLEI 219 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-----~~~G~V~l~~~d~~r~~a~eql~~ 219 (372)
.+++...|.. ...++++||++.+|++++|+||||||||||++.|+|++. |++|+|.++|.+..... . .+..
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~-~-~~~~ 160 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK-I-SSLE 160 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-c-chHh
Confidence 3567777742 347899999999999999999999999999999999986 46899999887753110 0 0111
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhhh-------hh----chHHHHHHhhCCC----ccchhhHhHHHHHHH---H
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRGK-------EQ----GFDIVLCDTSGRL----HTNYSLMEELVACKK---A 281 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~d~vl~dt~G~~----~~~~~~~~eLS~G~r---~ 281 (372)
+.. .+.+ +++.+...+. .+++.+.... .+ .+.. .++.+++. ...++.+.+||+||+ +
T Consensus 161 lr~--~i~~-v~q~~~~~~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 161 LRT--RIGM-VFQKPTPFEM-SIFDNVAYGPRNNGINDRKILEKIVEK-SLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred hhc--cEEE-EecCCccCCC-cHHHHHHhHHHhcCCChHHHHHHHHHH-HHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 122 2222 4444333322 2223332110 00 0122 23455542 234678889999999 9
Q ss_pred HHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 282 VGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 282 iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
||||++.+|+ +|+||| |+++|+.....+.+ .|..+. ++.|+|++||+++.. +.++.+|+.
T Consensus 236 LARAl~~~p~--IlLLDEPts~LD~~~~~~i~~--------~i~~l~---~~~Tii~iTH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 236 IARAIALEPE--VLLMDEPTSALDPIATAKIEE--------LILELK---KKYSIIIVTHSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHHhCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999 999999 99999999877665 777764 368999999999874 667888987
Q ss_pred cC
Q 017380 355 VE 356 (372)
Q Consensus 355 v~ 356 (372)
++
T Consensus 303 ~e 304 (329)
T PRK14257 303 EE 304 (329)
T ss_pred EE
Confidence 74
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=1.1e-21 Score=175.13 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=105.3
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.+++++||++++|++++|+||||||||||++.+. +++|+|.+.+.... +.. ..+.+ +.+
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----------~~~-~~~~~-~~q----- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----------FSR-NKLIF-IDQ----- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----------ccc-ccEEE-EhH-----
Confidence 4578999999999999999999999999999885 36889988543210 000 11111 111
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCC--CCceEEEEcC-CCCCCHHHHHH
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGA--PNEILLVLDG-TTGLNMLPQAR 310 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~--P~~~lLvLDE-tsglD~~~~~~ 310 (372)
.. .++.+|+.. ..++.+.+||+||+ .+|++++.+ |+ +|++|| |+++|+..+..
T Consensus 68 -----------------~~-~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~--llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 -----------------LQ-FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGT--LFILDEPSTGLHQQDINQ 127 (176)
T ss_pred -----------------HH-HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCC--EEEEeCCcccCCHHHHHH
Confidence 11 235667765 36778899999999 999999999 99 999999 99999999977
Q ss_pred HHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 311 ~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+.. ++.++. +.|.+||++||+.+..
T Consensus 128 l~~--------~l~~~~--~~g~tvIivSH~~~~~ 152 (176)
T cd03238 128 LLE--------VIKGLI--DLGNTVILIEHNLDVL 152 (176)
T ss_pred HHH--------HHHHHH--hCCCEEEEEeCCHHHH
Confidence 777 777775 3589999999998763
No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=1.1e-21 Score=205.71 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=132.2
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|++ ...++|+||++++|+.++|+|+|||||||+++.|+|+++|++|+|.+++.|..... .+.+.+..++
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~----~~~l~~~i~~ 419 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS----HSVLRQGVAM 419 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC----HHHHHhheEE
Confidence 455555643 34689999999999999999999999999999999999999999999887653221 2233344433
Q ss_pred ceeEeccccccHHHHHHHHHHhhh---hhchHHHHHHhhCCC-----------ccchhhHhHHHHHHH---HHHHHHhCC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK---EQGFDIVLCDTSGRL-----------HTNYSLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~vl~dt~G~~-----------~~~~~~~~eLS~G~r---~iAral~~~ 289 (372)
+.|.+...+.. +++++.... .+++..++ +.+|+. .........|||||+ +||||+..+
T Consensus 420 ---v~Q~~~lF~~T-i~~NI~~~~~~~d~~i~~a~-~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 420 ---VQQDPVVLADT-FLANVTLGRDISEEQVWQAL-ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred ---EccCCccccch-HHHHHHhCCCCCHHHHHHHH-HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55655554432 333333221 11122222 233332 222234457999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+++|+.+...+.+ .+.++. ++.|+|++||++..- +..+.+|+.++
T Consensus 495 ~~--illlDEpts~LD~~t~~~i~~--------~l~~~~---~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 495 PQ--ILILDEATANIDSGTEQAIQQ--------ALAAVR---EHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred CC--EEEEeCCcccCCHHHHHHHHH--------HHHHHh---CCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 99 999999 99999999877776 666653 368999999998664 55678888774
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=2.3e-22 Score=209.44 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=122.8
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++.+.|++...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+ +.+. +.+...
T Consensus 328 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~~-~i~~v~------------ 393 (556)
T PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV-KLAYVD------------ 393 (556)
T ss_pred EeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCce-EEEEEe------------
Confidence 34555566555789999999999999999999999999999999999999999998 4321 222221
Q ss_pred eeEeccc-cccHHHHHHHHHHhh--------hhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGE-KAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+.. ...+...+.+.+... ...... .+++.+|+.+ ..++.+.+||+||+ .||++++.+|+ +
T Consensus 394 ----q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~--l 466 (556)
T PRK11819 394 ----QSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN--V 466 (556)
T ss_pred ----CchhhcCCCCCHHHHHHhhcccccccccHHHHH-HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC--E
Confidence 111 011101111111100 001112 2456788864 45788999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeecc-Ccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGV-GEG 354 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~-Ge~ 354 (372)
|+||| |+|||+..+..+.+ +|.++. +++|++||++... +.++.+ |+.
T Consensus 467 llLDEPt~~LD~~~~~~l~~--------~l~~~~-----~tvi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 467 LLLDEPTNDLDVETLRALEE--------ALLEFP-----GCAVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred EEEcCCCCCCCHHHHHHHHH--------HHHhCC-----CeEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 99999 99999999988877 776652 4899999998764 455655 443
No 344
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=3.9e-22 Score=208.11 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=129.0
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|.+ ...++++||++++|++++|+|+||+|||||++.|+|+++|++|+|.+++.|..... ...+.+..+
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~----~~~~~~~i~ 409 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT----LASLRRQVA 409 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC----HHHHHhhce
Confidence 455556643 34689999999999999999999999999999999999999999999877642221 112223333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh-----hhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK-----EQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral 286 (372)
+ +++.+...+. .+.+++.... .++....+ +.+|+.+ ........|||||| +|||++
T Consensus 410 ~---v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l-~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 410 L---VSQDVVLFND-TIANNIAYGRTEQADRAEIERAL-AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred E---EccCcccccc-cHHHHHhcCCCCCCCHHHHHHHH-HHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 2 5555544333 3344433221 11122222 3334322 22233356999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
..+|+ +|+||| |+++|......+++ .+.++ .++.|+|+|||+...- +..+.+|+.+
T Consensus 485 l~~~~--illLDEpts~LD~~~~~~i~~--------~L~~~---~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 485 LKDAP--ILILDEATSALDNESERLVQA--------ALERL---MQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred hcCCC--EEEEeCccccCCHHHHHHHHH--------HHHHH---hCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 99999 999999 99999999988877 55554 3478999999998764 4556777765
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.86 E-value=1.9e-22 Score=174.32 Aligned_cols=121 Identities=23% Similarity=0.240 Sum_probs=99.6
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+...|++...++++||++++|++++|+||||+||||++++|+|+++|++|+|.+.+. ..+.+
T Consensus 6 l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------------~~i~~- 67 (144)
T cd03221 6 LSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------------VKIGY- 67 (144)
T ss_pred EEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------------EEEEE-
Confidence 334455445688999999999999999999999999999999999999999999542 01111
Q ss_pred EeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 230 VAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
+.+ ||+|++ +|||+++.+|+ ++++|| ++++|+
T Consensus 68 ~~~------------------------------------------lS~G~~~rv~laral~~~p~--illlDEP~~~LD~ 103 (144)
T cd03221 68 FEQ------------------------------------------LSGGEKMRLALAKLLLENPN--LLLLDEPTNHLDL 103 (144)
T ss_pred Ecc------------------------------------------CCHHHHHHHHHHHHHhcCCC--EEEEeCCccCCCH
Confidence 111 999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
..+..+++ ++.++ +.++|+++|+.+..
T Consensus 104 ~~~~~l~~--------~l~~~-----~~til~~th~~~~~ 130 (144)
T cd03221 104 ESIEALEE--------ALKEY-----PGTVILVSHDRYFL 130 (144)
T ss_pred HHHHHHHH--------HHHHc-----CCEEEEEECCHHHH
Confidence 99977776 66655 35999999998754
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=7.6e-22 Score=208.50 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=125.1
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc--------ch--hhhhHH
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF--------RA--AASDQL 217 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~--------r~--~a~eql 217 (372)
+++.+.|+....++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.... +. ....+.
T Consensus 7 ~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~ 86 (635)
T PRK11147 7 HGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDF 86 (635)
T ss_pred eeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHH
Confidence 35667787767789999999999999999999999999999999999999999998542110 00 000000
Q ss_pred -H----HHHHh---h-CcceeEeccccccHHHH---HHHHHHh----hhhhchHHHHHHhhCCCccchhhHhHHHHHHH-
Q 017380 218 -E----IWAER---T-GCEIVVAEGEKAKASSV---LSQAVKR----GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK- 280 (372)
Q Consensus 218 -~----~~~~~---~-~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r- 280 (372)
. .+... . .+............... +...+.. .....+..++ +.+|+. .++.+.+||+||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lgl~--~~~~~~~LSgGekq 163 (635)
T PRK11147 87 VAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVL-AQLGLD--PDAALSSLSGGWLR 163 (635)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HhCCCC--CCCchhhcCHHHHH
Confidence 0 00000 0 00000000000000000 0000110 0012233344 677875 3788999999999
Q ss_pred --HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeecc
Q 017380 281 --AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGV 351 (372)
Q Consensus 281 --~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~ 351 (372)
+||++|+.+|+ +|+||| |++||+..+..+.. +|.++. ++||+||||.... +..+.+
T Consensus 164 Rv~LAraL~~~P~--lLLLDEPt~~LD~~~~~~L~~--------~L~~~~-----~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 164 KAALGRALVSNPD--VLLLDEPTNHLDIETIEWLEG--------FLKTFQ-----GSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred HHHHHHHHhcCCC--EEEEcCCCCccCHHHHHHHHH--------HHHhCC-----CEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 99999999999 999999 99999999977776 776662 5999999998764 567778
Q ss_pred Cccc
Q 017380 352 GEGV 355 (372)
Q Consensus 352 Ge~v 355 (372)
|+.+
T Consensus 229 G~i~ 232 (635)
T PRK11147 229 GKLV 232 (635)
T ss_pred CEEE
Confidence 8765
No 347
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=8.3e-22 Score=192.26 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=117.7
Q ss_pred EEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhh----
Q 017380 175 IVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK---- 250 (372)
Q Consensus 175 lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (372)
|+||||||||||+++|+|+++|++|+|.+.+.+...... +.. .+.+ +.+.....+...+.+.+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~------~~~--~i~~-v~q~~~l~~~~tv~enl~~~~~~~~ 71 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP------HLR--HINM-VFQSYALFPHMTVEENVAFGLKMRK 71 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------HHC--CEEE-EecCccccCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999999999998766533211 111 2322 444443333323333332110
Q ss_pred ------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchh
Q 017380 251 ------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITG 320 (372)
Q Consensus 251 ------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tg 320 (372)
...++. +++.+|+.+..++++.+||+||+ +||||++.+|+ +|+||| |+|+|+..+..+..
T Consensus 72 ~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~--lllLDEP~s~LD~~~~~~l~~------- 141 (325)
T TIGR01187 72 VPRAEIKPRVLE-ALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK--ILLLDEPLSALDKKLRDQMQL------- 141 (325)
T ss_pred CCHHHHHHHHHH-HHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC--EEEEeCCCccCCHHHHHHHHH-------
Confidence 112233 34788998888999999999999 99999999999 999999 99999999988877
Q ss_pred hHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 321 LILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 321 iiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
++.++.. ..|.++|++||++... +.++.+|+.+
T Consensus 142 -~l~~l~~-~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~ 180 (325)
T TIGR01187 142 -ELKTIQE-QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA 180 (325)
T ss_pred -HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7777753 3488999999998753 5677888865
No 348
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-22 Score=187.65 Aligned_cols=189 Identities=18% Similarity=0.197 Sum_probs=143.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.+|+.. -+++|..+...+++|-|++|+||||++++|+|+.+|+.|.|.+++.-.+.....-.+....+++|+
T Consensus 5 ~~~~~lG~~~--l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGY-- 80 (352)
T COG4148 5 NFRQRLGNFA--LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY-- 80 (352)
T ss_pred ehhhhcCceE--EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeee--
Confidence 3455666542 246777766589999999999999999999999999999999966533322222223344455555
Q ss_pred eEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
++++...+|...++.++.+.. ...+|.++ +..|+.|..++++..||||+| +|+|||...|+ +|++|| .
T Consensus 81 -VFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv-~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~--LLLmDEPL 156 (352)
T COG4148 81 -VFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV-ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE--LLLMDEPL 156 (352)
T ss_pred -EeeccccccceEEecchhhhhcccchHhHHHHH-HHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC--eeeecCch
Confidence 677777777665555554432 23455544 899999999999999999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
+.||.....+++- .+..+.. +-...|+.|||.++.. +..+.+|+.
T Consensus 157 aSLD~~RK~Eilp--------ylERL~~-e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV 207 (352)
T COG4148 157 ASLDLPRKREILP--------YLERLRD-EINIPILYVSHSLDEVLRLADRVVVLENGKV 207 (352)
T ss_pred hhcccchhhHHHH--------HHHHHHH-hcCCCEEEEecCHHHHHhhhheEEEecCCeE
Confidence 9999888888887 8888853 5578999999998765 446677754
No 349
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=5.2e-22 Score=208.09 Aligned_cols=188 Identities=16% Similarity=0.229 Sum_probs=132.6
Q ss_pred HHHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 147 KNSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 147 ~~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
.+++...|++ ...++++|+++++|++++|+|+||||||||++.|+|+++|++|+|.+++.+..... ...+.+..+
T Consensus 337 ~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~ 412 (588)
T PRK13657 337 FDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT----RASLRRNIA 412 (588)
T ss_pred EEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC----HHHHHhheE
Confidence 3456666754 35689999999999999999999999999999999999999999999887653322 122333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +++.+...+. .+++++.... .+++...+ +.+|+.+ ........|||||+ +||||++
T Consensus 413 ~---v~Q~~~lf~~-Ti~~Ni~~~~~~~~d~~i~~al-~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 413 V---VFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAA-ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred E---EecCcccccc-cHHHHHhcCCCCCCHHHHHHHH-HHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2 5565554443 3344443321 11122221 2333321 11223346999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+++|+.....+++ .+.++. ++.|+|+|||+.... +..+.+|+.++
T Consensus 488 ~~~~--iliLDEpts~LD~~t~~~i~~--------~l~~~~---~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 488 KDPP--ILILDEATSALDVETEAKVKA--------ALDELM---KGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred cCCC--EEEEeCCccCCCHHHHHHHHH--------HHHHHh---cCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999 99999999988877 555553 478999999998754 56778888774
No 350
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.86 E-value=6.6e-22 Score=204.79 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=125.1
Q ss_pred HHHHHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|++. ..++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.+++.|..... ...+.+..
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~----~~~lr~~i 398 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD----ADSWRDQI 398 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC----HHHHHhhe
Confidence 45677777642 4789999999999999999999999999999999999999999999887754332 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral 286 (372)
++ +.+.+...+. .+++++.... .++....+ +.+|+.+ .......+|||||| ++|||+
T Consensus 399 ~~---v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~a~-~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 399 AW---VPQHPFLFAG-TIAENIRLARPDASDAEIRRAL-ERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred EE---EcCCCcccCc-CHHHHHhccCCCCCHHHHHHHH-HHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 33 4555444332 3344433211 11122222 2333322 22334567999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
+.+|+ +|+||| |+++|+..+..+++ .+.++ .++.|+|+++|++..
T Consensus 474 ~~~~~--ililDE~ts~lD~~~~~~i~~--------~l~~~---~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 474 LRDAP--LLLLDEPTAHLDAETEALVTE--------ALRAL---AQGRTVLLVTHRLAL 519 (529)
T ss_pred hcCCC--EEEEeCcccccCHHHHHHHHH--------HHHHh---cCCCEEEEEecCHHH
Confidence 99999 999999 99999999988877 56655 357899999999854
No 351
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=2e-21 Score=185.93 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=111.5
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH-----HHHhhCcceeEe
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI-----WAERTGCEIVVA 231 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~-----~~~~~~v~~~~~ 231 (372)
...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .+...|-.. ..+.+....
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~----i~yv~q~~~l~~~tv~enl~~~~--- 122 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFSWIMPGTIKENIIFGV--- 122 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE----EEEEeCcccccccCHHHHhhccc---
Confidence 35788999999999999999999999999999999999999999988541 111111100 000000000
Q ss_pred ccccccHHHHHHHHHHhhhhhchHHHHHHhhCCC--ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRL--HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~--~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
. ... ......+. ..+....+ +..... ...+..+.+||+||+ .|||+++.+|+ +|+||| |+|+|+
T Consensus 123 --~-~~~-~~~~~~l~---~~~l~~~l-~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~--iLiLDEPt~gLD~ 192 (282)
T cd03291 123 --S-YDE-YRYKSVVK---ACQLEEDI-TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD--LYLLDSPFGYLDV 192 (282)
T ss_pred --c-cCH-HHHHHHHH---HhCCHHHH-HhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC--EEEEECCCccCCH
Confidence 0 000 00000000 01111112 111110 112344679999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
..+..++.. ++.++. ++.+||++||++... +.++.+|+.+
T Consensus 193 ~~~~~l~~~-------ll~~~~---~~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 193 FTEKEIFES-------CVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHH-------HHHHhh---CCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 988766652 344443 368999999998753 5677788765
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=4.4e-22 Score=204.11 Aligned_cols=187 Identities=19% Similarity=0.174 Sum_probs=121.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH------
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA------ 221 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~------ 221 (372)
+++...|+....++++++++.+|+.+||||+||+|||||+++|+|.+.|++|+|..... .|.+...|-....
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCCCccHH
Confidence 35667788778889999999999999999999999999999999999999999988432 2222211110000
Q ss_pred ---------------HhhCcceeEecc--ccccHHHHHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---
Q 017380 222 ---------------ERTGCEIVVAEG--EKAKASSVLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK--- 280 (372)
Q Consensus 222 ---------------~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r--- 280 (372)
+.-......... .........+..+.... ..++..++ .-+|..+. ++++.+||||+|
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L-~gLg~~~~-~~~~~~LSGG~r~Rv 162 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL-LGLGFPDE-DRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH-hcCCCCcc-cCchhhcCHHHHHHH
Confidence 000000000000 00000000000000001 11223333 45566665 899999999999
Q ss_pred HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCc
Q 017380 281 AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGE 353 (372)
Q Consensus 281 ~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge 353 (372)
++|++|..+|+ +|+||| |++||..+...+-+ .|.++. | ++|+||||-.+- |..+..|+
T Consensus 163 ~LA~aL~~~pD--lLLLDEPTNHLD~~~i~WLe~--------~L~~~~----g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 163 ALARALLEEPD--LLLLDEPTNHLDLESIEWLED--------YLKRYP----G-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred HHHHHHhcCCC--EEEEcCCCcccCHHHHHHHHH--------HHHhCC----C-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 99999999999 999999 99999988866655 555543 4 999999998763 55555553
No 353
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=2.1e-21 Score=207.19 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=134.3
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ...++++||++++|+.++|+|+|||||||+++.|+|+++|++|+|.++|.|..... ...+.+..+
T Consensus 459 ~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~----~~~~r~~i~ 534 (694)
T TIGR01846 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD----PAWLRRQMG 534 (694)
T ss_pred EEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC----HHHHHHhCe
Confidence 567777753 34689999999999999999999999999999999999999999999887753221 122333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+ +.+.+...+. .+.+++.... ..+.+..+.... |+..........||+||+ ++|||++.
T Consensus 535 ~---v~q~~~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 535 V---VLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred E---EccCCeehhh-hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 2 4555444332 2344443211 111222221111 333333445568999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+ +|+||| |+++|+.++..+.+ .+.++. ++.|+|++||++... +..+.+|+.+++
T Consensus 611 ~~~--ililDEpts~LD~~~~~~i~~--------~l~~~~---~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 611 NPR--ILIFDEATSALDYESEALIMR--------NMREIC---RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCC--EEEEECCCcCCCHHHHHHHHH--------HHHHHh---CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 999 999999 99999999988887 666663 478999999999864 667888888743
No 354
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=2.6e-21 Score=202.17 Aligned_cols=187 Identities=14% Similarity=0.160 Sum_probs=128.1
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|+. ...++++||++++|++++|+|||||||||+++.|+|+++|++|+|.+++.+..... ...+.+..+
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~----~~~~~~~i~ 392 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ----LDSWRSRLA 392 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC----HHHHHhheE
Confidence 344445543 34689999999999999999999999999999999999999999999776542211 122333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhC-----------CCccchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSG-----------RLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G-----------~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.+.+...+. .+++++.... .+.....+ +.++ +..........||+||+ +||||++
T Consensus 393 ~---v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~-~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 393 V---VSQTPFLFSD-TVANNIALGRPDATQQEIEHVA-RLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred E---EccCCeeccc-cHHHHHhcCCCCCCHHHHHHHH-HHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 2 4444433332 2333332211 11111111 2222 22233344567999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+++|+.....+++ .+.++ .++.|+|+++|++... +..+.+|+.++
T Consensus 468 ~~~~--illlDEpts~LD~~~~~~i~~--------~l~~~---~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 468 LNAE--ILILDDALSAVDGRTEHQILH--------NLRQW---GEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529 (569)
T ss_pred cCCC--EEEEECccccCCHHHHHHHHH--------HHHHH---hCCCEEEEEecchhHHHcCCEEEEEeCCEEEE
Confidence 9999 999999 99999999988877 56655 3478999999998653 45667777663
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=5.5e-21 Score=199.71 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=128.5
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++...|.. ...++++||++++|+.++|+|+||+||||+++.|+|+++|++|+|.+++.+..... ...+.+.+
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~i 416 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD----PAELRARM 416 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC----HHHHHHhc
Confidence 455555643 24689999999999999999999999999999999999999999999876642221 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhh-----------CCCccchhhHhHHHHHHH---HHHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTS-----------GRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~-----------G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
++ +++.+...+.. +++++.... .++....+ +.+ |+..........|||||+ ++|||+
T Consensus 417 ~~---~~Q~~~lf~~T-i~~Ni~~~~~~~~~~~~~~~l-~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 417 AL---VPQDPVLFAAS-VMENIRYGRPDATDEEVEAAA-RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred eE---EccCCcccccc-HHHHHhcCCCCCCHHHHHHHH-HHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 33 44444333322 233332211 11111111 222 222222334567999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
..+|+ +|++|| |+++|+.....+++ .+.++. ++.++|++||+.... +..+.+|+.++
T Consensus 492 ~~~~~--ililDEpts~lD~~~~~~i~~--------~l~~~~---~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 492 LKDAP--ILLLDEATSALDAESEQLVQQ--------ALETLM---KGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HhCCC--eEEEeCcccccCHHHHHHHHH--------HHHHHh---CCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 99999 999999 99999999877776 666653 478999999998764 55677888774
No 356
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=3.8e-21 Score=207.81 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=142.0
Q ss_pred HHHHHHHHHhccC---CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH
Q 017380 145 ALKNSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 145 ~l~~~l~~~~~~~---~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
+..+++...|... .+++|+||++++|+.++||||+||||||.+.+|-.+|.|++|+|.+++.|..... ++.+.
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln----l~~LR 1063 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN----LKWLR 1063 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC----HHHHH
Confidence 4457788888764 3578999999999999999999999999999999999999999999888764432 44555
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHH
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAr 284 (372)
+.+++ +.|+|..+.. .+++++.+. +..++...+.... |....-..+..+|||||| +|||
T Consensus 1064 ~~i~l---VsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1064 KQIGL---VSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred Hhcce---eccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence 55555 6666654432 233333322 2223333332111 233333456679999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
|++.+|+ +|+||| |+.||..+...+-+ .|.+. ..|.|.|+|+|++... |.++.+|..+|.
T Consensus 1140 AilRnPk--ILLLDEATSALDseSErvVQe--------ALd~a---~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1140 AILRNPK--ILLLDEATSALDSESERVVQE--------ALDRA---MEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred HHHcCCC--eeeeeccchhhhhhhHHHHHH--------HHHHh---hcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 9999999 999999 99999998844444 55444 5689999999999774 889999998864
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=99.84 E-value=2.7e-21 Score=221.07 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=137.9
Q ss_pred HHHHHHHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 145 ALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 145 ~l~~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+..+++...|.+. .+++|+||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|..... +..+..
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~----l~~LR~ 1313 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG----LMDLRK 1313 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC----HHHHHh
Confidence 3446777788643 4799999999999999999999999999999999999999999999998875443 233334
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHh-hCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDT-SGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt-~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
++++ ++|++..... .+++++... +..+.+..+... .|+..........||+||| +||||+
T Consensus 1314 ~Isi---VpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1314 VLGI---IPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred ccEE---ECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 4443 5666554433 233333221 111122222111 1333333344458999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+.+|+ +||||| |+++|..+...+.+ .|.+. .++.|+|.|+|++... |.++.+|+.++
T Consensus 1390 Lr~p~--ILILDEATSaLD~~Te~~Iq~--------~I~~~---~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1390 LRRSK--ILVLDEATAAVDVRTDALIQK--------TIREE---FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred HcCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHH---CCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999 999999 99999999877766 56554 3579999999999875 66789999885
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.5e-21 Score=172.81 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=129.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
..++++|+++++|++++|+||||||||||...|+|.- +.++|+|.+.+.|.......|.. +.|+.. .+|.+.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA-----r~GifL-afQ~P~ 91 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA-----RAGIFL-AFQYPV 91 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH-----hcCCEE-eecCCc
Confidence 5688999999999999999999999999999999975 56899999999987654433322 345433 334333
Q ss_pred ccHH----HHHHHHHHhhhh---------hchHHHHHHhhCCCc-cchhhHh-HHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 236 AKAS----SVLSQAVKRGKE---------QGFDIVLCDTSGRLH-TNYSLME-ELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 236 ~~~~----~~~~~~~~~~~~---------~~~d~vl~dt~G~~~-~~~~~~~-eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
..+. .++..+...... ..... ..+.+++.+ +.++.++ -+|||+| .|..+++.+|+ +.||
T Consensus 92 ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e-~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePk--l~IL 168 (251)
T COG0396 92 EIPGVTNSDFLRAAMNARRGARGILPEFIKELKE-KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPK--LAIL 168 (251)
T ss_pred cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHH-HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCC--EEEe
Confidence 3222 222212111110 11111 335667765 4566665 4999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCcccC
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGVE 356 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v~ 356 (372)
|| -+|+|..+-..+.+ .+..+. ..+.++++|||.-.+- +..+.+|+.|.
T Consensus 169 DE~DSGLDIdalk~V~~--------~i~~lr--~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 169 DEPDSGLDIDALKIVAE--------GINALR--EEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred cCCCcCccHHHHHHHHH--------HHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 99 99999888755555 788887 5699999999987653 66788998884
No 359
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=2.7e-21 Score=220.45 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 145 ALKNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 145 ~l~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+..+++...|.+ ..+++|+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|..... +..+.+
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~----~~~lR~ 1310 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG----LTDLRR 1310 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC----HHHHHh
Confidence 334677778854 35799999999999999999999999999999999999999999999988874433 223334
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhhh---hhchHHHHHHhh-----------CCCccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRGK---EQGFDIVLCDTS-----------GRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~vl~dt~-----------G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
++++ ++|++...+. .+++++.... .+++..++ +.+ |+..........||+||| +||||
T Consensus 1311 ~i~i---VpQdp~LF~g-TIr~NL~~~~~~sdeei~~al-~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1311 VLSI---IPQSPVLFSG-TVRFNIDPFSEHNDADLWEAL-ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred hcEE---ECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHH-HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 4433 5555544432 2333332110 11111111 222 333233344457999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
++.+|+ +||||| |+++|......+.+ .+.+. .++.|+|.|+|+++.. |.++..|+.++
T Consensus 1386 LLr~~~--ILILDEATSaLD~~Te~~Iq~--------~L~~~---~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1386 LLRRSK--ILVLDEATASVDVRTDSLIQR--------TIREE---FKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred HHhCCC--EEEEECCcccCCHHHHHHHHH--------HHHHH---cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999 99999998877666 55554 3578999999999775 66788999885
No 360
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=185.97 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=141.7
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc--
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-- 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-- 235 (372)
.+++++||++.+|+.++|||.+||||||+-..|.++++++ |.|.+.|.+.... ...+.+-+..++++ +++++.
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~-~~~~mrplR~~mQv---VFQDPygS 375 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL-SRKEMRPLRRRMQV---VFQDPYGS 375 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc-ChhhhhhhhhhceE---EEeCCCCC
Confidence 4578999999999999999999999999999999999887 8999988775433 23445555566665 444432
Q ss_pred ccHHHHHHHHHHhh------------hhhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC
Q 017380 236 AKASSVLSQAVKRG------------KEQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 236 ~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE 299 (372)
..|...+.+.+.+. +.+.+...+ ..+|+.+. .++++.|+||||| +||||++.+|. +++|||
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL-~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~--~i~LDE 452 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL-EEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE--LILLDE 452 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHH-HHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc--EEEecC
Confidence 23333333332221 112233344 46799765 5899999999999 99999999999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
|+.||..-|+++.. ++.++.. +.|-+-++||||+.+. +..+.+|+.||.
T Consensus 453 PTSALD~SVQaQvv~--------LLr~LQ~-k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 453 PTSALDRSVQAQVLD--------LLRDLQQ-KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred CchHhhHHHHHHHHH--------HHHHHHH-HhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 99999999999998 9999974 5688999999999886 678899999954
No 361
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.84 E-value=8.2e-21 Score=200.00 Aligned_cols=177 Identities=16% Similarity=0.213 Sum_probs=131.8
Q ss_pred cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 156 ~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
+...++|+|+.+++|++++|+||||||||||++.|+|..++. +|+|.++|.+... ..+.+..++ +.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~-------~~~~~~i~y---v~Q 106 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA-------KEMRAISAY---VQQ 106 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH-------HHHhhhcee---ecc
Confidence 345689999999999999999999999999999999998774 6899997765421 112222222 444
Q ss_pred cccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHh------HHHHHHH---HHHHHHhCCC
Q 017380 233 GEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLME------ELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~------eLS~G~r---~iAral~~~P 290 (372)
.+...+...+.+.+... ..+.++.+ ++.+|+.+..+..++ .||+||| .||++++.+|
T Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~-l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEV-LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred ccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 44444333344433211 11123444 467898877777776 5999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC-------ceeeeccCccc
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI-------PVKFVGVGEGV 355 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~-------pi~~i~~Ge~v 355 (372)
+ +|+||| |+|||+..+..+++ .+.++. .+|.++|+++|+... -+..+.+|+.+
T Consensus 186 ~--vlllDEPtsgLD~~~~~~l~~--------~L~~l~--~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 186 P--LLFCDEPTSGLDSFMAYSVVQ--------VLKGLA--QKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred C--EEEeeCCCcchhHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 9 999999 99999999988888 888886 458999999999752 25677788776
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.84 E-value=9e-21 Score=187.97 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=128.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
..++++||++.+|+.++||||+|||||||.+.|.|..+|.+|.|.+++.|..+-. .+.+++..|+ .+|+-..+
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd----~e~lG~hiGY---LPQdVeLF 422 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD----REQLGRHIGY---LPQDVELF 422 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC----HHHhccccCc---Ccccceec
Confidence 4478999999999999999999999999999999999999999999988864432 1234455554 33333333
Q ss_pred HHHHHH------------HHHHhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 238 ASSVLS------------QAVKRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 238 ~~~~~~------------~~~~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
+..+.. ..++.++..++.+++.... |.......--..||+||| ++|||+..+|. ++|||| .
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~--lvVLDEPN 500 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF--LVVLDEPN 500 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc--EEEecCCC
Confidence 222211 1223333445555554222 222222344458999999 99999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcc
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEG 354 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~ 354 (372)
++||....+.+.. .|..++ ++|+++|+|+|+...- +..+.+|+.
T Consensus 501 sNLD~~GE~AL~~--------Ai~~~k--~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 501 SNLDSEGEAALAA--------AILAAK--ARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred CCcchhHHHHHHH--------HHHHHH--HcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 9999998877777 666676 7899999999998764 556666653
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.5e-21 Score=170.54 Aligned_cols=133 Identities=27% Similarity=0.389 Sum_probs=104.0
Q ss_pred HhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 153 LLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 153 ~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
.|.....+++++|++.+|++++|+|+||+||||+++.|+|.++|++|+|.+.+.+..... ...+... +.+ +.+
T Consensus 8 ~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~----~~~~~~~--i~~-~~q 80 (157)
T cd00267 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP----LEELRRR--IGY-VPQ 80 (157)
T ss_pred EeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC----HHHHHhc--eEE-Eee
Confidence 344335678999999999999999999999999999999999999999999765432110 0011111 111 111
Q ss_pred cccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHH
Q 017380 233 GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQ 308 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~ 308 (372)
||+|++ .++++++.+|+ ++++|| |+|+|...+
T Consensus 81 ------------------------------------------lS~G~~~r~~l~~~l~~~~~--i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 81 ------------------------------------------LSGGQRQRVALARALLLNPD--LLLLDEPTSGLDPASR 116 (157)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCC--EEEEeCCCcCCCHHHH
Confidence 999999 99999999999 999999 999999998
Q ss_pred HHHHhhhcCchhhHhhhccccccceeeEeeeeccCCce
Q 017380 309 AREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPV 346 (372)
Q Consensus 309 ~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi 346 (372)
..+.. ++.++.. .+.++++++|+.+...
T Consensus 117 ~~l~~--------~l~~~~~--~~~tii~~sh~~~~~~ 144 (157)
T cd00267 117 ERLLE--------LLRELAE--EGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHH--------HHHHHHH--CCCEEEEEeCCHHHHH
Confidence 77777 7777753 3689999999987753
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.84 E-value=4.9e-21 Score=203.83 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=128.3
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++.+.|++ ...++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .+++...|-. + ...
T Consensus 512 ~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~-~---~~l 585 (718)
T PLN03073 512 SDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHH-V---DGL 585 (718)
T ss_pred EeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEeccc-c---ccC
Confidence 466666743 34688999999999999999999999999999999999999999987431 1222221110 0 000
Q ss_pred ceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TT 301 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-ts 301 (372)
.. ...................+..+ ++.+|+.+ ..++.+.+||+||+ +||++++.+|+ +||||| |+
T Consensus 586 ~~------~~~~~~~~~~~~~~~~~~~i~~~-L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~--lLLLDEPT~ 656 (718)
T PLN03073 586 DL------SSNPLLYMMRCFPGVPEQKLRAH-LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--ILLLDEPSN 656 (718)
T ss_pred Cc------chhHHHHHHHhcCCCCHHHHHHH-HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC--EEEEcCCCC
Confidence 00 00000000000000011223333 36778864 46788999999999 99999999999 999999 99
Q ss_pred CCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCCCCCCHHHHHHHh
Q 017380 302 GLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDLQPFDAEAFVNAI 370 (372)
Q Consensus 302 glD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl~~~~~~~~v~~l 370 (372)
|||+..+..+.. .+.++ +++||++|||.... +.++.+|+.+. ..-++++|.+.+
T Consensus 657 ~LD~~s~~~l~~--------~L~~~-----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~--~~g~~~~~~~~~ 716 (718)
T PLN03073 657 HLDLDAVEALIQ--------GLVLF-----QGGVLMVSHDEHLISGSVDELWVVSEGKVTP--FHGTFHDYKKTL 716 (718)
T ss_pred CCCHHHHHHHHH--------HHHHc-----CCEEEEEECCHHHHHHhCCEEEEEECCEEEE--eCCCHHHHHHHh
Confidence 999998876665 44433 35999999998765 55677887652 112455665554
No 365
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=5.1e-21 Score=216.99 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=130.6
Q ss_pred HHHHHHHHHhccC---CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee-ccccchhhhhHHHHH
Q 017380 145 ALKNSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA-GDTFRAAASDQLEIW 220 (372)
Q Consensus 145 ~l~~~l~~~~~~~---~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~-~d~~r~~a~eql~~~ 220 (372)
+..+++...|+.. .+++++||++++|++++|+|||||||||++++|+|+++|++|+|.+.+ .|..... ...+
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~----~~~l 458 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN----LKWW 458 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCC----HHHH
Confidence 3446788888742 478999999999999999999999999999999999999999999954 4432111 2223
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhhh--------------------------------------------------
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRGK-------------------------------------------------- 250 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 250 (372)
.+.+++ +.+.+...+. .+.+.+....
T Consensus 459 r~~Ig~---V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 459 RSKIGV---VSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHhccE---ecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 333333 4444433332 2333332110
Q ss_pred -----------hhchHHHHHHhhCCCcc-----------chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCC
Q 017380 251 -----------EQGFDIVLCDTSGRLHT-----------NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 251 -----------~~~~d~vl~dt~G~~~~-----------~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD 304 (372)
.+.+..+ ++.+|+.+. ......+|||||| +||||++.+|+ +|+||| |+++|
T Consensus 535 l~~~~~~~~~~~~~v~~a-~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~--ILlLDEpTSaLD 611 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDV-SKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPK--ILILDEATSSLD 611 (1466)
T ss_pred hhcccccccCCHHHHHHH-HHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCC--EEEEeCcccccC
Confidence 0011111 123333222 2355678999999 99999999999 999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGE 353 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge 353 (372)
+..+..+.. .|.++.. .+|.|+|+|+|++... +.++.+|+
T Consensus 612 ~~se~~i~~--------~L~~~~~-~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 612 NKSEYLVQK--------TINNLKG-NENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHH--------HHHHHhh-cCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 999987777 7777742 3578999999998754 55677774
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=9.9e-21 Score=216.19 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=137.1
Q ss_pred HHHHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 145 ALKNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 145 ~l~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+..+++...|.+ ..+++|+||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|..... +..+..
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~----~~~LR~ 1360 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG----LHDLRF 1360 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC----HHHHHh
Confidence 344567777864 25799999999999999999999999999999999999999999999998875443 223334
Q ss_pred hhCcceeEeccccccHHHHHHHHHHh---hhhhchHHHHHHhh-----------CCCccchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKR---GKEQGFDIVLCDTS-----------GRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~vl~dt~-----------G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
++++ ++|++...+. .+++++.. ...+++..++ +.+ |+..........||+||| +||||
T Consensus 1361 ~i~i---VpQdp~LF~g-TIr~NLdp~~~~sdeei~~al-~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1361 KITI---IPQDPVLFSG-SLRMNLDPFSQYSDEEVWWAL-ELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred cCeE---ECCCCcccCc-cHHHHcCcccCCCHHHHHHHH-HHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 4443 5565544433 23333321 1111111112 222 333223334457999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
++.+|+ +||||| |+++|......+.+ .|.+. .++.|+|.|+|+++.. |..+.+|+.++.
T Consensus 1436 LLr~~~--ILiLDEaTSalD~~Te~~Iq~--------~l~~~---~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1436 LLRKTK--ILVLDEATAAVDLETDNLIQS--------TIRTQ---FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred HHcCCC--EEEEECCcccCCHHHHHHHHH--------HHHHH---cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999 999999 99999998876666 66554 3578999999999875 667899998853
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=1.3e-20 Score=200.68 Aligned_cols=195 Identities=16% Similarity=0.108 Sum_probs=128.1
Q ss_pred HHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh---hhcCCeEEEeecccc----ch------
Q 017380 145 ALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL---KNEGAKILMAAGDTF----RA------ 211 (372)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l---~~~~G~V~l~~~d~~----r~------ 211 (372)
+-.+++.+.|++...++++||++.+|++++||||||||||||+++|+|.. .|.+|+|.+...+.. ..
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~ 257 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLN 257 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHH
Confidence 34467888887766789999999999999999999999999999999864 578899987554311 10
Q ss_pred hhhhHH-------HHHHHhhCccee-Ee------ccccccHH---HHHHHHHHhh-------hhhchHHHHHHhhCCC-c
Q 017380 212 AASDQL-------EIWAERTGCEIV-VA------EGEKAKAS---SVLSQAVKRG-------KEQGFDIVLCDTSGRL-H 266 (372)
Q Consensus 212 ~a~eql-------~~~~~~~~v~~~-~~------~~~~~~~~---~~~~~~~~~~-------~~~~~d~vl~dt~G~~-~ 266 (372)
...+.. ....+....... .. ........ ..+.+..... ...++..++ +.+|+. +
T Consensus 258 ~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L-~~lgl~~~ 336 (718)
T PLN03073 258 TDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL-AGLSFTPE 336 (718)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHCCCChH
Confidence 000111 111111000000 00 00000000 0111111110 112233344 567875 4
Q ss_pred cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 267 TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 267 ~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
..++.+.+||+|++ +||++|+.+|+ +|+||| |++||+..+..+.. +|.++ ++++|++||+.
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~--lLlLDEPt~~LD~~~~~~l~~--------~L~~~-----~~tviivsHd~ 401 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPD--LLLLDEPTNHLDLHAVLWLET--------YLLKW-----PKTFIVVSHAR 401 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHc-----CCEEEEEECCH
Confidence 45778999999999 99999999999 999999 99999999987777 66665 57999999998
Q ss_pred CCc------eeeeccCccc
Q 017380 343 GIP------VKFVGVGEGV 355 (372)
Q Consensus 343 ~~p------i~~i~~Ge~v 355 (372)
... +..+.+|+.+
T Consensus 402 ~~l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 402 EFLNTVVTDILHLHGQKLV 420 (718)
T ss_pred HHHHHhCCEEEEEECCEEE
Confidence 864 5566777654
No 368
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1e-20 Score=214.52 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=134.2
Q ss_pred HHHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh---------------------------
Q 017380 147 KNSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--------------------------- 196 (372)
Q Consensus 147 ~~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--------------------------- 196 (372)
.++|...|.. ..+++++||++++|+.++|||||||||||++++|.|+|.|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 4677888853 3579999999999999999999999999999999999998
Q ss_pred ---------------------------cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhh
Q 017380 197 ---------------------------EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG 249 (372)
Q Consensus 197 ---------------------------~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
++|+|.++|.|..... +..+...+++ +.|.+..++. .+++++...
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~----~~~lR~~i~~---V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN----LKDLRNLFSI---VSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCC----HHHHHhhccE---eCCCCccccc-cHHHHHhcC
Confidence 5899999888763322 2334444443 6666655443 334444332
Q ss_pred h-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 250 K-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 250 ~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
. ..+.+..+.... |+..........|||||| +|||||+.+|+ +||||| |++||+.+...+
T Consensus 1320 ~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~--ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1320 KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK--ILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCC--EEEEeCcccccCHHHHHHH
Confidence 1 112222222111 222222344557999999 99999999999 999999 999999998777
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeecc----Cccc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGV----GEGV 355 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~----Ge~v 355 (372)
.+ .|.++.. .++.|+|+|+|++... |.++.+ |+.|
T Consensus 1398 ~~--------~L~~~~~-~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1398 EK--------TIVDIKD-KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HH--------HHHHHhc-cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 66 5555521 2478999999998654 667777 7744
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=6.2e-21 Score=217.74 Aligned_cols=190 Identities=12% Similarity=0.066 Sum_probs=136.6
Q ss_pred HHHHHHHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH
Q 017380 145 ALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE 222 (372)
Q Consensus 145 ~l~~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~ 222 (372)
+..+++...|.+. .+++|+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|..+.. ++.+.+
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~----l~~LR~ 1384 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG----LRELRR 1384 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC----HHHHHh
Confidence 3345666677542 3789999999999999999999999999999999999999999999998875543 233334
Q ss_pred hhCcceeEeccccccHHHHHHHHHHhh---hhhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHH
Q 017380 223 RTGCEIVVAEGEKAKASSVLSQAVKRG---KEQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 223 ~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAra 285 (372)
.+++ ++|++..+.. .+++++... ..+++...+ +.+|+.+ ........||+||| +||||
T Consensus 1385 ~I~i---VpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al-~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1385 QFSM---IPQDPVLFDG-TVRQNVDPFLEASSAEVWAAL-ELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred cceE---ECCCCccccc-cHHHHhCcccCCCHHHHHHHH-HHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 4443 6666655443 334443221 111122222 2333322 12233357999999 99999
Q ss_pred HhCC-CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 286 VNGA-PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~-P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
++.+ |+ +||||| |+++|......+.+ +|.+. .++.|+|+|+|++... |.++.+|+.++
T Consensus 1460 LL~~~~~--ILlLDEATSaLD~~te~~Iq~--------~L~~~---~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1460 LLKKGSG--FILMDEATANIDPALDRQIQA--------TVMSA---FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred HhcCCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHH---CCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9995 89 999999 99999999877776 55554 3478999999999865 67888998875
No 370
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=9.4e-21 Score=200.83 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=111.1
Q ss_pred HHHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 147 KNSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 147 ~~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
.+++...|. +...++++||++++|++++|+|||||||||++++|+|+++|++|+|.+.+.. +.+
T Consensus 454 ~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~--~i~------------- 518 (659)
T TIGR00954 454 FENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLF------------- 518 (659)
T ss_pred EEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC--cEE-------------
Confidence 356666664 3357899999999999999999999999999999999999999998773210 011
Q ss_pred cceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchh---------hHhHHHHHHH---HH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYS---------LMEELVACKK---AV 282 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~---------~~~eLS~G~r---~i 282 (372)
+ +.+.+...+. .+.+.+... ..+.... +++.+|+.+..++ ...+||+||+ +|
T Consensus 519 --~-v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~-~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 519 --Y-VPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQ-ILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred --E-ECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHH-HHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHH
Confidence 1 1222111111 111111100 0011111 2234454433222 3478999999 99
Q ss_pred HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 283 GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 283 Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
||+++.+|+ +++||| |+++|+..+..+.+ .+.+ .|.++|+++|++..+
T Consensus 594 ARal~~~p~--illLDEpts~LD~~~~~~l~~--------~l~~-----~~~tvI~isH~~~~~ 642 (659)
T TIGR00954 594 ARLFYHKPQ--FAILDECTSAVSVDVEGYMYR--------LCRE-----FGITLFSVSHRKSLW 642 (659)
T ss_pred HHHHHcCCC--EEEEeCCccCCCHHHHHHHHH--------HHHH-----cCCEEEEEeCchHHH
Confidence 999999999 999999 99999998877666 4433 378999999999864
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=3.4e-20 Score=190.26 Aligned_cols=166 Identities=22% Similarity=0.190 Sum_probs=121.0
Q ss_pred HHHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 147 KNSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 147 ~~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
.+++.+.|++ ...++++||.+.+|+.++||||||+|||||+++|+|...|.+|+|.+ + ...+++..+|-.. .
T Consensus 324 ~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~-g-~~v~igyf~Q~~~-----~ 396 (530)
T COG0488 324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-G-ETVKIGYFDQHRD-----E 396 (530)
T ss_pred EeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEe-C-CceEEEEEEehhh-----h
Confidence 4688889965 46688999999999999999999999999999999999999999998 3 2345555555321 0
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
. . .. ..+.+.+.... ...+...+ ..+|.... ..+++..|||||| .+|+.+..+|. +|||
T Consensus 397 l---~---~~----~t~~d~l~~~~~~~~e~~~r~~L-~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pN--vLiL 463 (530)
T COG0488 397 L---D---PD----KTVLEELSEGFPDGDEQEVRAYL-GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPN--LLLL 463 (530)
T ss_pred c---C---cc----CcHHHHHHhhCccccHHHHHHHH-HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCC--EEEE
Confidence 0 0 00 11122221111 12222333 35566543 4688999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|| |+.||..+...+-. .|..+ .|+||+||||-.+.
T Consensus 464 DEPTNhLDi~s~~aLe~--------aL~~f-----~Gtvl~VSHDr~Fl 499 (530)
T COG0488 464 DEPTNHLDIESLEALEE--------ALLDF-----EGTVLLVSHDRYFL 499 (530)
T ss_pred cCCCccCCHHHHHHHHH--------HHHhC-----CCeEEEEeCCHHHH
Confidence 99 99999998855554 55555 58999999998775
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=4.3e-20 Score=209.08 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=129.5
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK---NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~---~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
...++++|+.+++|++++|+||||||||||++.|+|+.+ +++|+|.++|.+..+ + +.+..++ +.+.
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-----~---~~~~i~y---v~Q~ 844 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-----S---FQRSIGY---VQQQ 844 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-----h---hhcceee---eccc
Confidence 346899999999999999999999999999999999987 678999998766521 1 1222222 3343
Q ss_pred ccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHh----HHHHHHH---HHHHHHhCCC-Cc
Q 017380 234 EKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLME----ELVACKK---AVGKVVNGAP-NE 292 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~----eLS~G~r---~iAral~~~P-~~ 292 (372)
+...+...+++.+... ..+.++.+ ++.+|+.+..+..++ +||+||| .||++|+.+| .
T Consensus 845 ~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~-l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~- 922 (1394)
T TIGR00956 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEV-IKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL- 922 (1394)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe-
Confidence 3222323333333211 01123334 478898887777776 7999999 9999999999 6
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccC-ccc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVG-EGV 355 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~G-e~v 355 (372)
+|+||| |+|||+..+..+.+ +|.++. .+|.+||+++|++... +..+..| +.+
T Consensus 923 -iLlLDEPTsgLD~~~~~~i~~--------~L~~la--~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 923 -LLFLDEPTSGLDSQTAWSICK--------LMRKLA--DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred -EEEEcCCCCCCCHHHHHHHHH--------HHHHHH--HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 899999 99999999988888 888886 4588999999998642 4566776 665
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.81 E-value=2.2e-20 Score=158.85 Aligned_cols=129 Identities=24% Similarity=0.286 Sum_probs=90.6
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHH
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAS 239 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~ 239 (372)
+++++|++.+|++++|+|+|||||||+++.|+|.++|++|+|.+.+.+.... ....+.. .+.+ +.+.....+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~----~~~~~~~--~i~~-~~~~~~~~~~ 73 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI----DIEELRR--RIGY-VPQDPQLFPG 73 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS----HHHHHHH--TEEE-EESSHCHHTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc----ccccccc--cccc-cccccccccc
Confidence 3689999999999999999999999999999999999999999987666431 1122222 2333 4444332222
Q ss_pred HHHHHHHHhhhhhchHHHHHHhhCCCccchhhH----hHHHHHHH---HHHHHHhCCCCceEEEEcC-CC
Q 017380 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLM----EELVACKK---AVGKVVNGAPNEILLVLDG-TT 301 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~----~eLS~G~r---~iAral~~~P~~~lLvLDE-ts 301 (372)
..+.+.. ....+..++ +.+++.+..+..+ .+||+||+ .||++++.+|+ +++||| |+
T Consensus 74 ~tv~~~~---~~~~~~~~l-~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~--llllDEPt~ 137 (137)
T PF00005_consen 74 LTVRENE---SDERIEEVL-KKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPK--LLLLDEPTN 137 (137)
T ss_dssp SBHHHHH---HHHHHHHHH-HHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSS--EEEEESTTT
T ss_pred ccccccc---ccccccccc-cccccccccccccccccchhhHHHHHHHHHHHHHHcCCC--EEEEeCCCC
Confidence 2122221 112233333 5666655555555 99999999 99999999999 999999 74
No 374
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=3.4e-19 Score=156.43 Aligned_cols=181 Identities=19% Similarity=0.242 Sum_probs=130.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc--
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-- 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-- 235 (372)
.+++.+||++++|+.++|+|.||||||||.++|+|++.|++|+|++++....-- .....++.+.+ ++++++
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~----Dy~~R~k~IRM---iFQDpnts 99 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG----DYSFRSKRIRM---IFQDPNTS 99 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc----chHhhhhheee---eecCCccc
Confidence 467889999999999999999999999999999999999999999976543110 01112222222 334332
Q ss_pred ccHHHHHHHHHHh-----------hhhhchHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 236 AKASSVLSQAVKR-----------GKEQGFDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 236 ~~~~~~~~~~~~~-----------~~~~~~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
..|...+-..++. .+.+++-.-+ ..+|+.+ ..+-++..||.||+ ++||||+-+|+ ++|.||
T Consensus 100 ~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL-~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~--iIIaDeA 176 (267)
T COG4167 100 LNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL-RMVGLLPDHANYYPHMLAPGQKQRVALARALILRPK--IIIADEA 176 (267)
T ss_pred cChhhhhhhHhcchhhhcccCChHHHHHHHHHHH-HHhccCccccccchhhcCchhHHHHHHHHHHhcCCc--EEEehhh
Confidence 2232222222211 1122222233 3568764 45778899999998 99999999999 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
.++||+..+.++.+ ++-.+.+ ..|.+-|.|+.++++. |..+..|+-||-
T Consensus 177 l~~LD~smrsQl~N--------L~LeLQe-k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 177 LASLDMSMRSQLIN--------LMLELQE-KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhhccHHHHHHHHH--------HHHHHHH-HhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 99999999988888 7777775 6688999999999875 667778877753
No 375
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.80 E-value=4.1e-20 Score=210.62 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=133.8
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|.+ ..+++|+||++++|+.++|||+|||||||+++.|.|++. .+|+|.++|.|..+.. +..+..++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~----~~~lR~~i 1294 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVT----LQTWRKAF 1294 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCC----HHHHHhce
Confidence 3566777754 357899999999999999999999999999999999997 7899999998875443 22333343
Q ss_pred CcceeEeccccccHHHHHHHHHHhh---hhhchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRG---KEQGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral~ 287 (372)
++ ++|.+...+. .+++++... ..+++..++ +.+|+.. ........||+||| +||||++
T Consensus 1295 s~---IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL-~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271 1295 GV---IPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVA-EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred EE---EeCCCccCcc-CHHHHhCcccCCCHHHHHHHH-HHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 33 5666655543 234443211 111122222 2333322 11222346999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +||||| |+++|......+.. .|.+. .++.|||.|+|++... |..+.+|+.++
T Consensus 1370 r~~~--ILlLDEaTS~lD~~Te~~I~~--------~L~~~---~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1370 SKAK--ILLLDEPSAHLDPVTLQIIRK--------TLKQS---FSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CCCC--EEEEeCCcccCCHHHHHHHHH--------HHHHH---cCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999 99999999877776 56554 3478999999998764 66788998874
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.80 E-value=1.6e-19 Score=204.42 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=127.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
..++|+|+.+++|++++|+||||||||||++.|+|..++ .+|+|.+.+.+... ..+....+ + +.+.+.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~-------~~~~~~ig--y-v~Q~d~ 963 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISG--Y-CEQNDI 963 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh-------HHhhhheE--E-Eccccc
Confidence 468899999999999999999999999999999999763 57999997755311 11222222 2 444433
Q ss_pred ccHHHHHHHHHHhhh-------------hhchHHHHHHhhCCCccchhhH-----hHHHHHHH---HHHHHHhCCCCceE
Q 017380 236 AKASSVLSQAVKRGK-------------EQGFDIVLCDTSGRLHTNYSLM-----EELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~G~~~~~~~~~-----~eLS~G~r---~iAral~~~P~~~l 294 (372)
..+...+.+.+.... .+.++. +++.+|+.+..+..+ ..||+||| .||++|+.+|+ +
T Consensus 964 ~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~-vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~--l 1040 (1470)
T PLN03140 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDE-VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS--I 1040 (1470)
T ss_pred cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCC--E
Confidence 333333344332210 011333 447889987777765 58999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeecc-Cccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGV-GEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~-Ge~v 355 (372)
|+||| |+|||+..+..+.+ ++.++. ++|.+||+++|+.... +..+.. |+.+
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~--------~L~~l~--~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMR--------TVRNTV--DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 99999 99999999988887 888886 4588999999998741 455664 6654
No 377
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=4.4e-20 Score=157.32 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=123.1
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+.-.++..--+.++|+++.+|+|+.++||+||||||++.-+.|.+.++ .|++.+++.+..-..+ ..+..|+
T Consensus 8 vsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa------~qRq~Gi 81 (213)
T COG4136 8 VSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA------AQRQIGI 81 (213)
T ss_pred eeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch------hhhheee
Confidence 333344434467899999999999999999999999999999999873 7899997665422111 1122333
Q ss_pred ceeEeccccccHHHHHHHHH---------HhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 227 EIVVAEGEKAKASSVLSQAV---------KRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
.+++.-.+|...+..++ ..++.+..+..+ +..|+....++.+.+|||||| ++-|+|..+|+ .
T Consensus 82 ---LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL-~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk--~ 155 (213)
T COG4136 82 ---LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAAL-ERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK--A 155 (213)
T ss_pred ---eecccccccccccccceEEecCcccccHHHHhhHHHHH-HHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc--e
Confidence 23333322222111111 112223344444 688999989999999999999 89999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+||| ++.+|..-+.+.-.- ++.++. +-|...+.||||..-.
T Consensus 156 lLLDEPFS~LD~ALR~qfR~w-------VFs~~r--~agiPtv~VTHD~~Dv 198 (213)
T COG4136 156 LLLDEPFSRLDVALRDQFRQW-------VFSEVR--AAGIPTVQVTHDLQDV 198 (213)
T ss_pred eeeCCchhHHHHHHHHHHHHH-------HHHHHH--hcCCCeEEEecccccC
Confidence 99999 999997766444443 777776 5688999999998653
No 378
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.9e-20 Score=179.45 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHHHhcc-CCCCCccceeccCCeEEEEEcC
Q 017380 101 KVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSG-PDIKDALKNSVLDLLTK-KGNKTELQLGYRKPAVVLIVGV 178 (372)
Q Consensus 101 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGp 178 (372)
..+-.+++.++.+=++-+...+++++-.+......-.+- ..-..+..+++...|.+ .++++|+||.+.+|+.+++|||
T Consensus 493 N~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~ 572 (790)
T KOG0056|consen 493 NFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGP 572 (790)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECC
Confidence 467778888888877766555555443222211111110 00113345678888875 4678999999999999999999
Q ss_pred CCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHH------------HHH
Q 017380 179 NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS------------QAV 246 (372)
Q Consensus 179 NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~ 246 (372)
+|+||||+++.|-.++..++|.|.++|.|.... +.......+|+ ++++....+....+ +..
T Consensus 573 SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv----t~~SLRs~IGV---VPQDtvLFNdTI~yNIryak~~Asneevy 645 (790)
T KOG0056|consen 573 SGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV----TQSSLRSSIGV---VPQDTVLFNDTILYNIRYAKPSASNEEVY 645 (790)
T ss_pred CCCchhHHHHHHHHHhhccCceEEEcCchHHHH----HHHHHHHhcCc---ccCcceeecceeeeheeecCCCCChHHHH
Confidence 999999999999999999999999999886321 12233344454 45544333322221 112
Q ss_pred HhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhh
Q 017380 247 KRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGL 321 (372)
Q Consensus 247 ~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgi 321 (372)
..++...+..-+.... |....-.++.-.||||+| +|||++..+|. +++||| |+.||......+-.
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~--iIlLDEATSALDT~tER~IQa-------- 715 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS--IILLDEATSALDTNTERAIQA-------- 715 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc--EEEEcchhhhcCCccHHHHHH--------
Confidence 2222233332232111 111122344457999999 99999999999 999999 99999777755555
Q ss_pred HhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 322 ILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 322 iltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
-+.++. .+.|-|+|.|++.-. |..+.+|..+|
T Consensus 716 aL~rlc---a~RTtIVvAHRLSTivnAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 716 ALARLC---ANRTTIVVAHRLSTIVNADLILVISNGRIVE 752 (790)
T ss_pred HHHHHh---cCCceEEEeeeehheecccEEEEEeCCeEee
Confidence 566674 478999999999875 56788998875
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=2.2e-19 Score=203.37 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=127.3
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh----hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL----KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l----~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
..++|+|+.+++|++++|+||||||||||++.|+|+. +|.+|+|.++|.+..... ..+ +..+.+ +.+.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-----~~~--r~~i~y-v~Q~ 146 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-----KHY--RGDVVY-NAET 146 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-----hhc--CceeEE-eccc
Confidence 4688999999999999999999999999999999986 468999999776541110 111 111222 4443
Q ss_pred ccccHHHHHHHHHHhh--------------hh---hchHHHHHHhhCCCccchhh-----HhHHHHHHH---HHHHHHhC
Q 017380 234 EKAKASSVLSQAVKRG--------------KE---QGFDIVLCDTSGRLHTNYSL-----MEELVACKK---AVGKVVNG 288 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~--------------~~---~~~d~vl~dt~G~~~~~~~~-----~~eLS~G~r---~iAral~~ 288 (372)
....+...+.+.+..+ .. +.....+++.+|+.+..+.+ +..|||||| .||++++.
T Consensus 147 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 3333322333332211 00 11122345778998766544 567999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccC-C------ceeeeccCccc
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELG-I------PVKFVGVGEGV 355 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~-~------pi~~i~~Ge~v 355 (372)
+|+ +|+||| |+|||+..+..+.+ +|.++.. ..|.++|+++|+.. . -+..+..|+.+
T Consensus 227 ~p~--vlllDEPTsgLD~~~~~~i~~--------~L~~la~-~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 227 GAK--IQCWDNATRGLDSATALEFIR--------ALKTSAN-ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred CCC--EEEEeCCCCCcCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 999 999999 99999999988887 8888863 34889999999963 1 25577788765
No 380
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=1.5e-19 Score=167.73 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCC--CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 258 LCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAP--NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 258 l~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P--~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
+++.+|+.+ ..+.++.+||+||+ .||++++.+| + +|++|| |+|+|+..+..+++ ++.++. .
T Consensus 120 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~--llllDEPt~gLD~~~~~~l~~--------~l~~~~--~ 187 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV--LYVLDEPSIGLHPRDNDRLIE--------TLKRLR--D 187 (226)
T ss_pred HHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC--EEEEeCCccCCCHHHHHHHHH--------HHHHHH--h
Confidence 346788876 46889999999999 9999999997 6 999999 99999999988887 787775 4
Q ss_pred cceeeEeeeeccCC
Q 017380 331 RGGCVVSVVDELGI 344 (372)
Q Consensus 331 ~gg~vi~isH~~~~ 344 (372)
+|.++|++||++..
T Consensus 188 ~g~tii~itH~~~~ 201 (226)
T cd03270 188 LGNTVLVVEHDEDT 201 (226)
T ss_pred CCCEEEEEEeCHHH
Confidence 58899999999875
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.78 E-value=2.8e-19 Score=202.39 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=124.1
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
...++|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+...... +..+.+ +.+.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---------~~~i~y-v~Q~ 247 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---------RKTSAY-ISQN 247 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---------cceeEE-eccc
Confidence 34689999999999999999999999999999999999987 8999997765311100 001111 2222
Q ss_pred ccccHHHHHHHHHHhh--------------------hh------------------------hchHHHHHHhhCCCccc-
Q 017380 234 EKAKASSVLSQAVKRG--------------------KE------------------------QGFDIVLCDTSGRLHTN- 268 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~--------------------~~------------------------~~~d~vl~dt~G~~~~~- 268 (372)
....+...+.+.+..+ +. ...+. +++.+|+.+..
T Consensus 248 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~L~~lGL~~~~~ 326 (1470)
T PLN03140 248 DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDY-TLKILGLDICKD 326 (1470)
T ss_pred ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHH-HHHHcCCccccC
Confidence 2111111111111100 00 00122 44678997654
Q ss_pred ----hhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeee
Q 017380 269 ----YSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVD 340 (372)
Q Consensus 269 ----~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH 340 (372)
+..+..|||||| .||++++.+|+ +|++|| |+|||+....++.+ .+.++.. ..|.|+|+++|
T Consensus 327 t~vg~~~~rglSGGerkRVsia~aL~~~p~--vlllDEPTsGLDs~t~~~i~~--------~Lr~la~-~~g~Tviis~H 395 (1470)
T PLN03140 327 TIVGDEMIRGISGGQKKRVTTGEMIVGPTK--TLFMDEISTGLDSSTTYQIVK--------CLQQIVH-LTEATVLMSLL 395 (1470)
T ss_pred ceeCCccccCCCcccceeeeehhhhcCCCc--EEEEeCCCcCccHHHHHHHHH--------HHHHHHH-hcCCEEEEEec
Confidence 456789999999 99999999999 999999 99999999988887 8888853 34789999999
Q ss_pred ccCC-------ceeeeccCccc
Q 017380 341 ELGI-------PVKFVGVGEGV 355 (372)
Q Consensus 341 ~~~~-------pi~~i~~Ge~v 355 (372)
+..- -+..+..|+.+
T Consensus 396 qp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CCCHHHHHHhheEEEeeCceEE
Confidence 8531 25567788776
No 382
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=3.9e-19 Score=193.74 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=134.8
Q ss_pred HHHHHHHHHhccCC-CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 145 ALKNSVLDLLTKKG-NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 145 ~l~~~l~~~~~~~~-~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
...+++.+.|+... +++++++.+++||+.++.|||||||||++++|.|..+|++|++.+.|.|.-.....+ ...+.
T Consensus 565 ~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~---~~~~~ 641 (885)
T KOG0059|consen 565 LVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQ---QVRKQ 641 (885)
T ss_pred EEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchh---hhhhh
Confidence 34467888888765 789999999999999999999999999999999999999999999776653211110 11122
Q ss_pred hCcceeEeccccccHHHHHHHHHH------h---hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVK------R---GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+|+ -+|.....+....++.+. - .+.+..-..+++.+|+.+..+++.+.+|+|++ .+|.|++.+|+
T Consensus 642 iGy---CPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~ 718 (885)
T KOG0059|consen 642 LGY---CPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS 718 (885)
T ss_pred ccc---CCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence 332 222221111111222111 0 11122233455889999999999999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+++||| |+|+||..+..+++ ++..+. +.|+++|..||.++..
T Consensus 719 --vi~LDEPstGmDP~arr~lW~--------ii~~~~--k~g~aiiLTSHsMeE~ 761 (885)
T KOG0059|consen 719 --VILLDEPSTGLDPKARRHLWD--------IIARLR--KNGKAIILTSHSMEEA 761 (885)
T ss_pred --EEEecCCCCCCCHHHHHHHHH--------HHHHHH--hcCCEEEEEcCCHHHH
Confidence 999999 99999999999998 888886 3344999999999875
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.5e-19 Score=174.44 Aligned_cols=194 Identities=16% Similarity=0.115 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHH
Q 017380 142 IKDALKNSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 142 ~~~~l~~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~ 220 (372)
++.+-.+++...|..+ -.+.++|+++++||++.|+|.|||||||+++.|.|+++|++|+|.++|...- .+++..|
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~----~e~ledY 395 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS----AEQLEDY 395 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC----CCCHHHH
Confidence 4555667888888765 3467899999999999999999999999999999999999999999776541 2444444
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCC---ccchh--hHhHHHHHHH---HHHHHHhCCCCc
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRL---HTNYS--LMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~---~~~~~--~~~eLS~G~r---~iAral~~~P~~ 292 (372)
...+.. +..+....+...-.+. .+..+.++.++ ....+. ...+. -.-.||.||| ++--|+..+.+
T Consensus 396 R~LfSa---vFsDyhLF~~ll~~e~--~as~q~i~~~L-qrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~- 468 (546)
T COG4615 396 RKLFSA---VFSDYHLFDQLLGPEG--KASPQLIEKWL-QRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD- 468 (546)
T ss_pred HHHHHH---HhhhHhhhHhhhCCcc--CCChHHHHHHH-HHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC-
Confidence 443332 1111111110000000 01112222222 121221 11222 2347999999 66668888888
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
++|+|| .+.+||.-+...+.. .+-.++ +.|+||+.||||-.-= +.-+.+||.++
T Consensus 469 -Ilv~DEWAADQDPaFRR~FY~~-------lLp~LK--~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 469 -ILVLDEWAADQDPAFRREFYQV-------LLPLLK--EQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred -eEEeehhhccCChHHHHHHHHH-------HhHHHH--HhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 999999 999999999777765 666677 6899999999985431 23456888774
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.76 E-value=1.6e-18 Score=153.74 Aligned_cols=172 Identities=47% Similarity=0.786 Sum_probs=138.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
+++++|++|+||||+...++..+...+.+|.+.+.|++|....+|+..|.+..++++. ......++.....+.+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF-EEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE-ecCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999887778999999999999889999999988888873 333333444444455544445
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
.+.+.+++|+.|..+.+...+.+|+..... ..|+++++|+|..++.+...+...+.+..+++++|+||+|+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~------~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~ 154 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRV------VKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDAR 154 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhh------cCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCC
Confidence 677888899999887666666666443322 25889999999966677777777776678899999999999999
Q ss_pred ceeeEeeeeccCCceeeec
Q 017380 332 GGCVVSVVDELGIPVKFVG 350 (372)
Q Consensus 332 gg~vi~isH~~~~pi~~i~ 350 (372)
++.++.+....++|+.|+|
T Consensus 155 ~g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 155 GGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred cchhhhhHHHHCcCeEeeC
Confidence 9999999999999999986
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.76 E-value=2e-18 Score=197.00 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=113.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHH-----HHHHhhCcceeEec
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE-----IWAERTGCEIVVAE 232 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~-----~~~~~~~v~~~~~~ 232 (372)
..++|+||++++|++++|+||||||||||++.|+|.++|++|+|.+.+. ++...|-. ...+.+-...
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~----iayv~Q~~~l~~~Ti~eNI~~g~---- 511 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTSWIMPGTIKDNIIFGL---- 511 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE----EEEEeCCCccCCccHHHHHHhcc----
Confidence 4688999999999999999999999999999999999999999998541 12111110 0000000000
Q ss_pred cccccHHHHHHHHHHhhhhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHH
Q 017380 233 GEKAKASSVLSQAVKRGKEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNML 306 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~ 306 (372)
. .+. ....+.+.. ...+..+ +.. |..........+|||||| +||||++.+|+ +++||| ++++|+.
T Consensus 512 -~-~~~-~~~~~~~~~---~~L~~~l-~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~--illLDep~saLD~~ 582 (1490)
T TIGR01271 512 -S-YDE-YRYTSVIKA---CQLEEDI-ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD--LYLLDSPFTHLDVV 582 (1490)
T ss_pred -c-cch-HHHHHHHHH---HhHHHHH-HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCC--EEEEeCCcccCCHH
Confidence 0 000 000011110 0111111 111 111122345678999999 99999999999 999999 9999999
Q ss_pred HHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 307 PQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 307 ~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
....++.. ++.++. ++.|+|++||++... +.++.+|+.+
T Consensus 583 ~~~~i~~~-------~l~~~~---~~~tvilvtH~~~~~~~ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 583 TEKEIFES-------CLCKLM---SNKTRILVTSKLEHLKKADKILLLHEGVCY 626 (1490)
T ss_pred HHHHHHHH-------HHHHHh---cCCeEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 99888874 455543 478999999998764 5567777655
No 386
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=2.7e-18 Score=180.15 Aligned_cols=176 Identities=20% Similarity=0.293 Sum_probs=133.4
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh---cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN---EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~---~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
...+++++..+++|++.||+||+|||||||+++|+|.... .+|+|.++|.... .+.+....+. +.|+
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~-------~~~~~~~s~y---V~Qd 112 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD-------SRSFRKISGY---VQQD 112 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc-------hhhhhheeEE---Eccc
Confidence 3457899999999999999999999999999999999874 6899999773321 2233333332 5555
Q ss_pred ccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccchhhHh-----HHHHHHH---HHHHHHhCCCCc
Q 017380 234 EKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTNYSLME-----ELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~~~~~~-----eLS~G~r---~iAral~~~P~~ 292 (372)
....+...+.+.+... +...++.++ +..|+.+..+..++ .+||||| .||.-++.+|.
T Consensus 113 D~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi-~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~- 190 (613)
T KOG0061|consen 113 DVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI-SELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPS- 190 (613)
T ss_pred ccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCC-
Confidence 5555555555443221 223355555 67799888888886 5999999 99999999999
Q ss_pred eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCccc
Q 017380 293 ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGV 355 (372)
Q Consensus 293 ~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v 355 (372)
+|++|| |+|||.....++.. ++.++. .+|.+||.+.|...-- +.++..|+.+
T Consensus 191 -iLflDEPTSGLDS~sA~~vv~--------~Lk~lA--~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 191 -ILFLDEPTSGLDSFSALQVVQ--------LLKRLA--RSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred -EEEecCCCCCcchhhHHHHHH--------HHHHHH--hCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 999999 99999999989998 999998 4599999999997543 4456666544
No 387
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.75 E-value=3.6e-18 Score=155.21 Aligned_cols=148 Identities=15% Similarity=0.246 Sum_probs=100.7
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC---------eEEEeeccccchhhhhHHHHHHHhhCcceeEe
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA---------KILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G---------~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~ 231 (372)
+++++++.+| +++|+|||||||||+++.|++++.+..| ++.+.+.+.... .....+.+ +.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~-vf 82 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---------ANFAEVTL-TF 82 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---------CceEEEEE-EE
Confidence 5678889899 9999999999999999999999876532 343433332110 00111222 33
Q ss_pred ccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh----CCCCceEEEEcC-CCCC
Q 017380 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN----GAPNEILLVLDG-TTGL 303 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~----~~P~~~lLvLDE-tsgl 303 (372)
+.+... +. ......++.++ +. .+..+..+.+||+||+ ++|++++ ..|+ ++++|| ++|+
T Consensus 83 q~~~~~-----~~---~~~~~~~~~~l-~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~--illlDEP~~~L 148 (197)
T cd03278 83 DNSDGR-----YS---IISQGDVSEII-EA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSP--FCVLDEVDAAL 148 (197)
T ss_pred EcCCCc-----ee---EEehhhHHHHH-hC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCC--EEEEeCCcccC
Confidence 433222 00 00112333333 33 4456788999999998 8999886 4568 999999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
|+..+..+.. ++.++. ++.+||++||++..
T Consensus 149 D~~~~~~l~~--------~l~~~~---~~~tiIiitH~~~~ 178 (197)
T cd03278 149 DDANVERFAR--------LLKEFS---KETQFIVITHRKGT 178 (197)
T ss_pred CHHHHHHHHH--------HHHHhc---cCCEEEEEECCHHH
Confidence 9999988877 777774 25789999999875
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.74 E-value=7.1e-18 Score=192.90 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=117.3
Q ss_pred HHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHH-----HH
Q 017380 149 SVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI-----WA 221 (372)
Q Consensus 149 ~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~-----~~ 221 (372)
++...|+. ...++|+||++++|++++|+|||||||||+++.|+|.++|++|+|.+.+ +++...|-.. ..
T Consensus 641 ~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~~~Ti~ 716 (1522)
T TIGR00957 641 NATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQNDSLR 716 (1522)
T ss_pred EeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCccccCCcHH
Confidence 44445543 2468999999999999999999999999999999999999999998854 1222222100 00
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHH-hhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCD-TSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~d-t~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
+.+... .+ .++ ....+.++.. .....+.. -.|.....+....+|||||| +||||+..+|+ +++|
T Consensus 717 eNI~~g-----~~-~~~-~~~~~~~~~~---~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~--illL 784 (1522)
T TIGR00957 717 ENILFG-----KA-LNE-KYYQQVLEAC---ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD--IYLF 784 (1522)
T ss_pred HHhhcC-----Cc-cCH-HHHHHHHHHh---CCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Confidence 000000 00 000 0001111100 01111100 01222233456778999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
|| |+++|+.....+++. +.+..+..++.|+|++||++... +..+.+|+.+
T Consensus 785 DEp~saLD~~~~~~i~~~--------l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEH--------VIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred cCCccccCHHHHHHHHHH--------HhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 99 999999999888884 33222113478999999998764 5567777765
No 389
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.2e-18 Score=146.94 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=116.3
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc----ccchhhhhHHHHHHHhhCcceeEecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD----TFRAAASDQLEIWAERTGCEIVVAEG 233 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d----~~r~~a~eql~~~~~~~~v~~~~~~~ 233 (372)
.++.++||+++.||++++=||+|+||||++++|.|-|.|++|+|.+.-.+ ...+...+-+......+|+ +.+.
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGy---VSQF 101 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGY---VSQF 101 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHH---HHHH
Confidence 45789999999999999999999999999999999999999999996432 2222223323222222222 1111
Q ss_pred ----ccccHHHHHHHH-HHhh----hhhchHHHHHHhhCCCccc-hhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 234 ----EKAKASSVLSQA-VKRG----KEQGFDIVLCDTSGRLHTN-YSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 234 ----~~~~~~~~~~~~-~~~~----~~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
+......++.+. +... ..+.....+...+++.+.. .-.+..+|||++ .|||.++.+-+ +|+|||
T Consensus 102 LRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~p--ILLLDEP 179 (235)
T COG4778 102 LRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP--ILLLDEP 179 (235)
T ss_pred HHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCc--eEEecCC
Confidence 000011111111 1111 1111122233455655443 445779999999 99999999988 999999
Q ss_pred CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+.||..+++.+.+ +|..-+ ++|.+++-|-||-...
T Consensus 180 TasLDa~Nr~vVve--------li~e~K--a~GaAlvGIFHDeevr 215 (235)
T COG4778 180 TASLDATNRAVVVE--------LIREAK--ARGAALVGIFHDEEVR 215 (235)
T ss_pred cccccccchHHHHH--------HHHHHH--hcCceEEEeeccHHHH
Confidence 99999999987777 666655 6799999999997654
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=1.9e-17 Score=144.62 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=117.6
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHH--HHH-HHhhCccee---Eecc
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL--EIW-AERTGCEIV---VAEG 233 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql--~~~-~~~~~v~~~---~~~~ 233 (372)
+-++|.++..|+++-+|||||+||||+++.+||+. |-+|+|.+.|.+.-.....+-. +.| ++...-++. +.+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 45678889999999999999999999999999986 5678999988876443333222 222 222221110 0000
Q ss_pred ccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh-----CCCCceEEEEcC-CCCCC
Q 017380 234 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN-----GAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~-----~~P~~~lLvLDE-tsglD 304 (372)
.-..|... ....++. +.+..++.+...+.+.+||||+- -+|.... .+|...+|++|| .+++|
T Consensus 94 ~L~qP~~~--------~a~~i~~-i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LD 164 (248)
T COG4138 94 TLHQPDKT--------RTELLND-VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164 (248)
T ss_pred hhcCchHH--------HHHHHHH-HHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchh
Confidence 11111111 1122232 34666788888888999999987 2222211 377778999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
..++..+.. ++..+. ..|.+||+.+||++-- ++.+..|+.+
T Consensus 165 vAQ~~aLdr--------ll~~~c--~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~ 211 (248)
T COG4138 165 VAQQSALDR--------LLSALC--QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211 (248)
T ss_pred HHHHHHHHH--------HHHHHH--hCCcEEEEeccchhhHHHHHHHHHHHhcCeEE
Confidence 988865555 888887 6799999999999975 3445555544
No 391
>PTZ00243 ABC transporter; Provisional
Probab=99.72 E-value=1.1e-17 Score=191.12 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=113.5
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHH-----HHHHhhCcceeEe
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE-----IWAERTGCEIVVA 231 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~-----~~~~~~~v~~~~~ 231 (372)
...++++||++++|++++|+||||||||||++.|+|.++|++|+|.+.. +++...|-. ...+.+..
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~----~i~yv~Q~~~l~~~Tv~enI~~----- 743 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER----SIAYVPQQAWIMNATVRGNILF----- 743 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----eEEEEeCCCccCCCcHHHHHHc-----
Confidence 3468899999999999999999999999999999999999999997631 111111110 00000000
Q ss_pred ccccccHHHHHHHHHHhhhhhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
... .+. ....+.+.. ...+..+ +.+ |+....++...+|||||| +||||+..+|+ +++||| |+++|+
T Consensus 744 ~~~-~~~-~~~~~~~~~---~~l~~~l-~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~--illLDEP~saLD~ 815 (1560)
T PTZ00243 744 FDE-EDA-ARLADAVRV---SQLEADL-AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRD--VYLLDDPLSALDA 815 (1560)
T ss_pred CCh-hhH-HHHHHHHHH---hhhHHHH-HHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEcCccccCCH
Confidence 000 000 000111110 1111122 222 444444667889999999 99999999999 999999 999999
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
.....++.+ ++... .+|.|+|++||++... +.++.+|+.+
T Consensus 816 ~~~~~i~~~-------~~~~~---~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 816 HVGERVVEE-------CFLGA---LAGKTRVLATHQVHVVPRADYVVALGDGRVE 860 (1560)
T ss_pred HHHHHHHHH-------HHHHh---hCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 888777764 33222 2478999999998764 5567777665
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.72 E-value=2.3e-16 Score=151.10 Aligned_cols=174 Identities=30% Similarity=0.418 Sum_probs=126.1
Q ss_pred HHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 017380 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSV 150 (372)
Q Consensus 71 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l 150 (372)
+.+.+++..+++.+..+..-+ .|. ..++.++++++.|+++||+.+++.+|++.+++. .+.+.+...+.+.|
T Consensus 107 ~~~~~e~~~lk~~l~~~~~~~-~~~--~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~------~~~~~~~~~~~~~l 177 (282)
T TIGR03499 107 EELRKELEALRELLERLLAGL-AWL--QRDPEGAKLLERLLRAGVSPELARELLEKLPER------ADAEDAWRWLREAL 177 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hhc--ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc------CCHHHHHHHHHHHH
Confidence 345566666666554322111 122 346788999999999999999999999998752 24456677888888
Q ss_pred HHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-C-CeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 151 LDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-G-AKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 151 ~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~-G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
.+.++... ...++ ..+|.+++|+||||+|||||+.+|++.+... + .+|.+...|+||.++.+|+..|+...++++
T Consensus 178 ~~~l~~~~--~~~~~-~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~ 254 (282)
T TIGR03499 178 EKMLPVKP--EEDEI-LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV 254 (282)
T ss_pred HHHhccCC--ccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce
Confidence 88886321 12222 3468899999999999999999999999875 4 699999999999999999999999999987
Q ss_pred eEeccccccHHHHHHHHHHhhhhhchHHHHHHhhC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSG 263 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G 263 (372)
..... + ..+.+.+... .++|.+++||+|
T Consensus 255 ~~~~~----~-~~l~~~l~~~--~~~d~vliDt~G 282 (282)
T TIGR03499 255 KVARD----P-KELRKALDRL--RDKDLILIDTAG 282 (282)
T ss_pred eccCC----H-HHHHHHHHHc--cCCCEEEEeCCC
Confidence 43322 2 1233444432 346888888876
No 393
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.8e-17 Score=190.01 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=116.5
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC-CeEEEeeccccchhhhhHHH-----
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG-AKILMAAGDTFRAAASDQLE----- 218 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~-G~V~l~~~d~~r~~a~eql~----- 218 (372)
+++...|.. ...++|+||++++|+.++|+||+|||||||++.|.|.++|.+ |+|.+.+. ++.+.|-.
T Consensus 618 ~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~----Iayv~Q~p~Lfng 693 (1622)
T PLN03130 618 KNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT----VAYVPQVSWIFNA 693 (1622)
T ss_pred EeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe----EEEEcCccccCCC
Confidence 344445542 235899999999999999999999999999999999999988 89876321 11111110
Q ss_pred HHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 219 IWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 219 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
...+.+-. ..+ .+ .....+.++.+ ..+..+.... |...........|||||| +||||+..+|+ +
T Consensus 694 TIreNI~f-----g~~-~d-~e~y~~vl~a~---~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~--I 761 (1622)
T PLN03130 694 TVRDNILF-----GSP-FD-PERYERAIDVT---ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSD--V 761 (1622)
T ss_pred CHHHHHhC-----CCc-cc-HHHHHHHHHHh---CcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCC--E
Confidence 00010000 000 00 01111222211 1111121111 222222334457999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
++||| |+++|+.....++++ .+..+ .++.|+|++||++... |.++.+|+.+
T Consensus 762 lLLDEptSALD~~~~~~I~~~-------~l~~~---l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDK-------CIKDE---LRGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred EEECCCccccCHHHHHHHHHH-------HhhHH---hcCCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 99999 999999988788765 55443 2478999999998653 5677788766
No 394
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.9e-17 Score=189.07 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=114.3
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHH-----H
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE-----I 219 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~-----~ 219 (372)
+++...|.. ...++|+||++++|+.++|+||+||||||+++.|.|.++|++|.+..... +.+.+.|-. .
T Consensus 618 ~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~---~Iayv~Q~p~Lf~gT 694 (1495)
T PLN03232 618 KNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG---SVAYVPQVSWIFNAT 694 (1495)
T ss_pred EeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecC---cEEEEcCcccccccc
Confidence 344445543 34689999999999999999999999999999999999998765432111 011111100 0
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
..+.+-. ..+ .+ .....+.++.+ ..+..+.... |...........|||||| +||||+..+|+ ++
T Consensus 695 IreNI~f-----g~~-~~-~e~~~~vl~~~---~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~--Il 762 (1495)
T PLN03232 695 VRENILF-----GSD-FE-SERYWRAIDVT---ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD--IY 762 (1495)
T ss_pred HHHHhhc-----CCc-cC-HHHHHHHHHHh---CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC--EE
Confidence 0111000 000 00 01111122111 1111111011 112222344557999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+||| |+++|+.....++++ ++... .++.|+|++||++..- |..+.+|+.++
T Consensus 763 LLDEptSaLD~~t~~~I~~~-------~l~~~---l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDS-------CMKDE---LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred EEcCCccccCHHHHHHHHHH-------Hhhhh---hcCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 9999 999999988888875 55443 3578999999998653 55677887663
No 395
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=2.3e-17 Score=182.26 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhccC--CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH
Q 017380 144 DALKNSVLDLLTKK--GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 144 ~~l~~~l~~~~~~~--~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
++..+++.-+|.+. .+++++||++++||.+||||.+||||||++..|-.+..|.+|+|.|+|.|+...+- ..+.
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL----~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL----HDLR 1213 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH----HHHH
Confidence 34557888888765 57899999999999999999999999999999999999999999999999877653 3333
Q ss_pred HhhCcceeEecccc---------ccHH-----HHHHHHHHhhhhhchHHHHHHh-hCCCccchhhHhHHHHHHH---HHH
Q 017380 222 ERTGCEIVVAEGEK---------AKAS-----SVLSQAVKRGKEQGFDIVLCDT-SGRLHTNYSLMEELVACKK---AVG 283 (372)
Q Consensus 222 ~~~~v~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~d~vl~dt-~G~~~~~~~~~~eLS~G~r---~iA 283 (372)
.++.+ ++|++. .||. ..+.++++... ....+... -|+...-..-..++|-||| ++|
T Consensus 1214 srlsI---IPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~---Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1214 SRLSI---IPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQ---LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred hcCee---eCCCCceecCccccccCcccccCHHHHHHHHHHhC---hHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 44443 444432 3332 22334444322 22222121 2344444555678999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|||..+.+ +||||| |++.|+..-..+-+. |=+++ ++.|||.|.|+++-. |..+..|+.+|
T Consensus 1288 RALLr~sk--ILvLDEATAsVD~~TD~lIQ~t-------IR~~F----~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1288 RALLRKSK--ILVLDEATASVDPETDALIQKT-------IREEF----KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred HHHhccCC--EEEEecccccCChHHHHHHHHH-------HHHHh----cCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 99999999 999999 999998877544441 22333 478999999999886 66789998874
No 396
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.8e-17 Score=156.71 Aligned_cols=188 Identities=18% Similarity=0.175 Sum_probs=129.5
Q ss_pred HHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++...|.+ .+.++++||.+++|+.+++|||+|+||||+++.|-.+|.+++|.|.+++.|.... .| ......+|+
T Consensus 267 ~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v---tq-~slR~aIg~- 341 (497)
T COG5265 267 NVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV---TQ-QSLRRAIGI- 341 (497)
T ss_pred EEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh---HH-HHHHHHhCc-
Confidence 44445543 3568899999999999999999999999999999999999999999998886322 11 122233444
Q ss_pred eeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
++++.........+ .+..+ +.......+...+ |....-....-.||||+| +|||++..+|
T Consensus 342 --VPQDtvLFNDti~y-ni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 342 --VPQDTVLFNDTIAY-NIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred --CcccceehhhhHHH-HHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 45554444333222 22221 1112222222111 111122333446999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+ +|++|| |+.||.....++.. -+.++ .+|.|-++|.|++.-. |..+.+|..+|.
T Consensus 419 ~--il~~deatsaldt~te~~iq~--------~l~~~---~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 419 P--ILILDEATSALDTHTEQAIQA--------ALREV---SAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred C--EEEEehhhhHhhhhHHHHHHH--------HHHHH---hCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 9 999999 99999988866665 34444 5789999999999875 668889988753
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.70 E-value=2.2e-17 Score=164.97 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=113.8
Q ss_pred HHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|.+. ...++++|.+..++.+++|||||+||||+++.+.|.+.|..|.|.-.....+ +...|- .+...++
T Consensus 393 ~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~--~~y~Qh--~~e~ldl 468 (614)
T KOG0927|consen 393 QNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL--PRYNQH--LAEQLDL 468 (614)
T ss_pred eccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc--hhhhhh--hHhhcCc
Confidence 4455555433 2345677888899999999999999999999999999999999877443321 111111 1111111
Q ss_pred ceeEeccccccHHHHHHHHHHh-hhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-C
Q 017380 227 EIVVAEGEKAKASSVLSQAVKR-GKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-T 300 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-t 300 (372)
. ..+.......+.. ...+.+.. ++..+|+. .....++.+||.|+| .+|+.++..|+ +||||| |
T Consensus 469 ~--------~s~le~~~~~~~~~~~~e~~r~-ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~--lLlLDEPt 537 (614)
T KOG0927|consen 469 D--------KSSLEFMMPKFPDEKELEEMRS-ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH--LLLLDEPT 537 (614)
T ss_pred c--------hhHHHHHHHhccccchHHHHHH-HHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc--EEEecCCC
Confidence 1 1111122222221 11222333 34677886 556889999999999 89999999999 999999 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+|........+ .|. ...|+||.+|||+.+.
T Consensus 538 nhLDi~tid~lae--------aiN-----e~~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 538 NHLDIETIDALAE--------AIN-----EFPGGVVLVSHDFRLI 569 (614)
T ss_pred cCCCchhHHHHHH--------HHh-----ccCCceeeeechhhHH
Confidence 9999877754444 333 3457899999999875
No 398
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=1.9e-16 Score=149.65 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=65.2
Q ss_pred HHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCC---CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccc
Q 017380 258 LCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGA---PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGS 329 (372)
Q Consensus 258 l~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~---P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t 329 (372)
+++.+|+.+ ..++.+.+||+||+ .+|++++.+ |+ +++||| |+|+|+..+..+.. ++.++.
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~--lllLDEPtsgLD~~~~~~l~~--------~L~~l~-- 219 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKT--LYILDEPTTGLHFHDVKKLLE--------VLQRLV-- 219 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCc--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--
Confidence 346779877 46888999999999 999999986 67 999999 99999999988887 788876
Q ss_pred ccceeeEeeeeccCCc
Q 017380 330 ARGGCVVSVVDELGIP 345 (372)
Q Consensus 330 ~~gg~vi~isH~~~~p 345 (372)
++|.++|+++|+++..
T Consensus 220 ~~g~tvIiitH~~~~i 235 (261)
T cd03271 220 DKGNTVVVIEHNLDVI 235 (261)
T ss_pred hCCCEEEEEeCCHHHH
Confidence 4589999999999764
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=1.3e-16 Score=148.90 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=54.7
Q ss_pred hCCCccchhhHhHHHHHHH---HHHHHHh----CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 262 SGRLHTNYSLMEELVACKK---AVGKVVN----GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 262 ~G~~~~~~~~~~eLS~G~r---~iAral~----~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
+++....+..+.+||+||+ +||++++ .+|+ ++++|| |+++|+..+..++. .+.++. ++.
T Consensus 146 ~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~--illlDEp~~~ld~~~~~~~~~--------~l~~~~---~~~ 212 (243)
T cd03272 146 TNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAP--FYLFDEIDAALDAQYRTAVAN--------MIKELS---DGA 212 (243)
T ss_pred hhccccccccccccCHHHHHHHHHHHHHHHhccCCCC--EEEEECCccCCCHHHHHHHHH--------HHHHHh---CCC
Confidence 3444445678899999999 9999996 3588 999999 99999999987777 777764 267
Q ss_pred eeEeeeeccC
Q 017380 334 CVVSVVDELG 343 (372)
Q Consensus 334 ~vi~isH~~~ 343 (372)
++|+++|+..
T Consensus 213 ~ii~~~h~~~ 222 (243)
T cd03272 213 QFITTTFRPE 222 (243)
T ss_pred EEEEEecCHH
Confidence 7888888754
No 400
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=1.6e-16 Score=145.96 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=94.4
Q ss_pred Cccceecc-CCeEEEEEcCCCCcHHHHHHHHHhhh-hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccH
Q 017380 161 TELQLGYR-KPAVVLIVGVNGGGKTTSLGKLAYRL-KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKA 238 (372)
Q Consensus 161 ~~isl~i~-~g~vi~lvGpNGsGKTTll~~Lag~l-~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~ 238 (372)
.+++|... +|++++|+|||||||||+++.|++.+ -+..+..... +. .+.+..-.....+.+ ..+......
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~--~~-----~~~~~~~~~~~~v~~-~f~~~~~~~ 89 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE--NL-----RSVFAPGEDTAEVSF-TFQLGGKKY 89 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch--hH-----HHHhcCCCccEEEEE-EEEECCeEE
Confidence 45666543 48899999999999999999999643 2332222221 00 000000001111222 111111100
Q ss_pred HHHHHHHHHhhhhhchHH-HHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC----------CCCceEEEEcC-CCCC
Q 017380 239 SSVLSQAVKRGKEQGFDI-VLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG----------APNEILLVLDG-TTGL 303 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~d~-vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~----------~P~~~lLvLDE-tsgl 303 (372)
. + .+.. ......+.. +.....++.+..+..+.+||+|++ .+|++++. +|+ ++++|| ++++
T Consensus 90 ~-~-~r~~-gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~--~lllDEp~~~l 164 (213)
T cd03279 90 R-V-ERSR-GLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLE--ALFIDEGFGTL 164 (213)
T ss_pred E-E-EEec-CCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCC--EEEEeCCcccC
Confidence 0 0 0000 000001110 111222234455678889999999 99999974 567 999999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+.....+.. ++.++. .++.++|++||++...
T Consensus 165 D~~~~~~~~~--------~l~~~~--~~~~tii~itH~~~~~ 196 (213)
T cd03279 165 DPEALEAVAT--------ALELIR--TENRMVGVISHVEELK 196 (213)
T ss_pred CHHHHHHHHH--------HHHHHH--hCCCEEEEEECchHHH
Confidence 9999977776 788885 4488999999999765
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3e-16 Score=156.07 Aligned_cols=164 Identities=23% Similarity=0.207 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE-------eeccccchhhhh
Q 017380 143 KDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM-------AAGDTFRAAASD 215 (372)
Q Consensus 143 ~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l-------~~~d~~r~~a~e 215 (372)
+++...++.-.||...-+.+-++.+..|..++|||+||+|||||++.|+. |.|.. .+.++. +
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~---~-- 147 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE---A-- 147 (582)
T ss_pred cceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH---H--
Confidence 34455566777887777888889999999999999999999999999998 33322 122221 0
Q ss_pred HHHHHHHhhCcceeEeccccccHHHHHHH--HHHhh-hhhc-hHHHHHHhhCCCc-cchhhHhHHHHHHH---HHHHHHh
Q 017380 216 QLEIWAERTGCEIVVAEGEKAKASSVLSQ--AVKRG-KEQG-FDIVLCDTSGRLH-TNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 216 ql~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~d~vl~dt~G~~~-~~~~~~~eLS~G~r---~iAral~ 287 (372)
+. .+.. ..... ...+.+ .+... .... ++.+| .-+|..+ ...+++.+||||+| ++|||+.
T Consensus 148 -~~-----~~l~---~D~~~---~dfl~~e~~l~~~~~l~ei~~~~L-~glGFt~emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 148 -LQ-----SVLE---SDTER---LDFLAEEKELLAGLTLEEIYDKIL-AGLGFTPEMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred -Hh-----hhhh---ccHHH---HHHHHhhhhhhccchHHHHHHHHH-HhCCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence 00 0000 00000 000000 00000 0011 11133 3556654 34678899999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+|+ +|+||| |+.||..+...+-+ .|+.. ..|+|+||||-++-
T Consensus 215 ~~pD--lLLLDEPTNhLDv~av~WLe~--------yL~t~-----~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 215 AKPD--LLLLDEPTNHLDVVAVAWLEN--------YLQTW-----KITSLIVSHDRNFL 258 (582)
T ss_pred cCCC--EEeecCCcccchhHHHHHHHH--------HHhhC-----CceEEEEeccHHHH
Confidence 9999 999999 99999998876665 55443 47999999998874
No 402
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.62 E-value=3.5e-16 Score=142.91 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=90.7
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHH----hhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc-cc--
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLA----YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE-KA-- 236 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~La----g~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~-~~-- 236 (372)
++++.+| +++|+||||+||||++..|. |...|.+|.+.. ..+..+.. .....+.+ ..+.. ..
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~-~~~~i~~~--------~~~~~v~~-~f~~~~~~~~ 85 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH-DPKLIREG--------EVRAQVKL-AFENANGKKY 85 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccc-hHHHHhCC--------CCcEEEEE-EEEeCCCCEE
Confidence 3455566 99999999999999999995 766666665541 11111110 01111111 11111 00
Q ss_pred --cHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHH---------HHHHHhCCCCceEEEEcC-CCCCC
Q 017380 237 --KASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKA---------VGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~---------iAral~~~P~~~lLvLDE-tsglD 304 (372)
.....+++.+......... ...++.+.+||+|++. ++++++.+|+ ++++|| ++++|
T Consensus 86 ~v~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~--illlDEP~~~LD 153 (204)
T cd03240 86 TITRSLAILENVIFCHQGESN----------WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCG--ILALDEPTTNLD 153 (204)
T ss_pred EEEEEhhHhhceeeechHHHH----------HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCC--EEEEcCCccccC
Confidence 0000112211111011111 1115677899999993 6789999999 999999 99999
Q ss_pred HHHHH-HHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 305 MLPQA-REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 305 ~~~~~-~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..+. .+.. ++..+.. ..+.++|++||+....
T Consensus 154 ~~~~~~~l~~--------~l~~~~~-~~~~~iiiitH~~~~~ 186 (204)
T cd03240 154 EENIEESLAE--------IIEERKS-QKNFQLIVITHDEELV 186 (204)
T ss_pred HHHHHHHHHH--------HHHHHHh-ccCCEEEEEEecHHHH
Confidence 99987 6666 7777752 2278999999998754
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=151.23 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE--Eeecccc-ch---------
Q 017380 144 DALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL--MAAGDTF-RA--------- 211 (372)
Q Consensus 144 ~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~--l~~~d~~-r~--------- 211 (372)
.+-.++++..|-+...++|..|++.+|+.++|+||||+||||+|+.|+|...|..-++- ......- +.
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence 34456788888877788999999999999999999999999999999999987433332 2221110 00
Q ss_pred -hhh--hHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh----hchHHHHHHhhCC-CccchhhHhHHHHHHH---
Q 017380 212 -AAS--DQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTSGR-LHTNYSLMEELVACKK--- 280 (372)
Q Consensus 212 -~a~--eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~G~-~~~~~~~~~eLS~G~r--- 280 (372)
... ..+..+.++..... .....+....+++....... .+...++. -.|. .+..++....||+|++
T Consensus 155 ~~~~e~~rle~~~E~l~~~~---d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~-glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQAC---DDKEKDELDELYERLDEMDNDTFEAKAAKILH-GLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhc---cchhhhHHHHHHHHHHhhCchhHHHHHHHHHH-hcCCCHhHHHHHhhccCchHHHHH
Confidence 000 11222222222110 01111112222222221111 11222333 2233 3456788999999999
Q ss_pred HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 281 AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 281 ~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++||+|...|+ +|+||| |++||..+...+-. .|.++|. .++++++|.-+.-
T Consensus 231 aLAr~Lf~kP~--LLLLDEPtnhLDleA~~wLee--------~L~k~d~----~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 231 ALARALFQKPD--LLLLDEPTNHLDLEAIVWLEE--------YLAKYDR----IILVIVSHSQDFL 282 (614)
T ss_pred HHHHHHhcCCC--EEEecCCccCCCHHHHHHHHH--------HHHhccC----ceEEEEecchhhh
Confidence 99999999999 999999 99999999876665 8888873 2899999998875
No 404
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=5.3e-16 Score=142.60 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=57.7
Q ss_pred HhhCCCccchhhHhHHHHHHH---HHHHHHhC----CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 260 DTSGRLHTNYSLMEELVACKK---AVGKVVNG----APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 260 dt~G~~~~~~~~~~eLS~G~r---~iAral~~----~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
+.+++.+..+..+..||+|++ .+|++++. .|+ ++++|| |+|+|+..+..+.. ++..+. +
T Consensus 113 ~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~--ililDEPt~gLD~~~~~~l~~--------~l~~~~---~ 179 (212)
T cd03274 113 QIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTP--LYVMDEIDAALDFRNVSIVAN--------YIKERT---K 179 (212)
T ss_pred EeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCC--EEEEcCCCcCCCHHHHHHHHH--------HHHHHc---C
Confidence 455666666778899999999 99998863 478 999999 99999999977776 777763 4
Q ss_pred ceeeEeeeeccC
Q 017380 332 GGCVVSVVDELG 343 (372)
Q Consensus 332 gg~vi~isH~~~ 343 (372)
++++|++||+..
T Consensus 180 ~~~~iivs~~~~ 191 (212)
T cd03274 180 NAQFIVISLRNN 191 (212)
T ss_pred CCEEEEEECcHH
Confidence 688999999854
No 405
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.59 E-value=1.6e-15 Score=135.68 Aligned_cols=195 Identities=19% Similarity=0.211 Sum_probs=129.9
Q ss_pred HHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhH------H-HHH
Q 017380 149 SVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ------L-EIW 220 (372)
Q Consensus 149 ~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eq------l-~~~ 220 (372)
++...|... +..-|+|++++.|....+||.||+||||++++|+|..-..+|.|.+.+.+.|+....+- + ..|
T Consensus 18 gl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW 97 (291)
T KOG2355|consen 18 GLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEW 97 (291)
T ss_pred ccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccc
Confidence 455556432 34568899999999999999999999999999999887778999998888887322111 1 112
Q ss_pred HHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 221 AERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 221 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
....++.-.++.. +........-.+......+.+ .+++.+.+ ....+|..+|.||| .|++-|...=+ +|+|
T Consensus 98 ~~~~~~agevplq-~D~sae~mifgV~g~dp~Rre-~LI~iLDI--dl~WRmHkvSDGqrRRVQicMGLL~Pfk--VLLL 171 (291)
T KOG2355|consen 98 SKTVGIAGEVPLQ-GDISAEHMIFGVGGDDPERRE-KLIDILDI--DLRWRMHKVSDGQRRRVQICMGLLKPFK--VLLL 171 (291)
T ss_pred ccccccccccccc-ccccHHHHHhhccCCChhHhh-hhhhheec--cceEEEeeccccchhhhHHHHhccccee--EEEe
Confidence 2222211101000 001111000111111122222 34444433 23567889999999 88888887667 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC----c--eeeeccCcccCCC
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI----P--VKFVGVGEGVEDL 358 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~----p--i~~i~~Ge~v~Dl 358 (372)
|| |..||...++.+++ .+.+-.+ .+|.||+..||-++= | +.|+..|+.++.+
T Consensus 172 DEVTVDLDVlARadLLe--------FlkeEce-~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 172 DEVTVDLDVLARADLLE--------FLKEECE-QRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred eeeEeehHHHHHHHHHH--------HHHHHHh-hcCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 99 99999999999888 7777665 679999999998853 3 7899999987543
No 406
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.59 E-value=2.9e-15 Score=134.43 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=127.8
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc----CCeEEEeeccccchhhhhHHHHHHHhhCcceeEec
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE----GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAE 232 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~----~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~ 232 (372)
..+++.+|++.+.||+-++||.+|||||-..+.|.|..+.. .-+..+.+.|..+....+..+..+....+ +++
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isM---IFQ 96 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSM---IFQ 96 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhh---hhc
Confidence 34578899999999999999999999999999999988632 12233333333333333333444444333 333
Q ss_pred ccc--ccHHHHHHHH-HHh---------------hhhhchHHHHHHhhCCCccc---hhhHhHHHHHHH---HHHHHHhC
Q 017380 233 GEK--AKASSVLSQA-VKR---------------GKEQGFDIVLCDTSGRLHTN---YSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 233 ~~~--~~~~~~~~~~-~~~---------------~~~~~~d~vl~dt~G~~~~~---~~~~~eLS~G~r---~iAral~~ 288 (372)
.+. .+|...+-.. ++. .++++ ...++..+|+.+.. ..++.||..|+- .||.|++.
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrr-AIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRR-AIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHH-HHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc
Confidence 332 3454333221 111 01222 22345688886443 468889998876 89999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|. +||.|| |+.+++..+.++|. ++..+.. ..|.+|+.++||+... +..+--||.++
T Consensus 176 qPr--LLIADEPTN~~e~~Tq~QifR--------LLs~mNQ-n~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 176 QPR--LLIADEPTNSMEPTTQAQIFR--------LLSRLNQ-NSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred CCc--eEeccCCCcccCccHHHHHHH--------HHHHhhc-cCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999 999999 99999999999999 9999985 6789999999999764 44455677764
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=146.98 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=103.3
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHH
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAV 246 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 246 (372)
+..|||++++||||-||||++++|||.++|++|. ..+. +.....| ++.......-...+....
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-~vSyKPQ------------yI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-KVSYKPQ------------YISPDYDGTVEDLLRSAI 426 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-eEeecce------------eecCCCCCcHHHHHHHhh
Confidence 3467899999999999999999999999999885 1111 1111111 111111111111111111
Q ss_pred Hh-hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhh
Q 017380 247 KR-GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGL 321 (372)
Q Consensus 247 ~~-~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgi 321 (372)
.. ....-+..-+..-+.+....++.+.+||||+. +||.+|..+.+ +.+||| ++.||..++...-.
T Consensus 427 ~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD--lYllDEPSA~LDvEqR~~vak-------- 496 (591)
T COG1245 427 RSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREAD--LYLLDEPSAYLDVEQRIIVAK-------- 496 (591)
T ss_pred hhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccC--EEEecCchhhccHHHHHHHHH--------
Confidence 11 11112233344566777778899999999988 99999999999 999999 99999998876666
Q ss_pred HhhhccccccceeeEeeeeccCCc
Q 017380 322 ILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 322 iltkld~t~~gg~vi~isH~~~~p 345 (372)
+|..+-+ ....++++|-||+-+.
T Consensus 497 vIRR~~e-~~~kta~vVdHDi~~~ 519 (591)
T COG1245 497 VIRRFIE-NNEKTALVVDHDIYMI 519 (591)
T ss_pred HHHHHHh-hcCceEEEEecceehh
Confidence 7888766 6688999999998653
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.7e-15 Score=145.78 Aligned_cols=159 Identities=24% Similarity=0.279 Sum_probs=103.5
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHH
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAS 239 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~ 239 (372)
...++|.+.--..|+||||||+||||++++|.|-+.|+.|...- ....|++.++|- +++.+... ..|.
T Consensus 603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK--nhrL~iG~FdQh--~~E~L~~E--------etp~ 670 (807)
T KOG0066|consen 603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK--NHRLRIGWFDQH--ANEALNGE--------ETPV 670 (807)
T ss_pred hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc--cceeeeechhhh--hHHhhccc--------cCHH
Confidence 34566777767889999999999999999999999998886544 122344443332 22222211 1122
Q ss_pred HHHHHHHHhhhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhh
Q 017380 240 SVLSQAVKRGKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFND 314 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~ 314 (372)
.++...+.. ..+.....| -++|+. |...-.+..||||++ ++|-..+..|+ +||||| |++||..+...+-.
T Consensus 671 EyLqr~FNl-pyq~ARK~L-G~fGL~sHAHTikikdLSGGQKaRValaeLal~~PD--vlILDEPTNNLDIESIDALaE- 745 (807)
T KOG0066|consen 671 EYLQRKFNL-PYQEARKQL-GTFGLASHAHTIKIKDLSGGQKARVALAELALGGPD--VLILDEPTNNLDIESIDALAE- 745 (807)
T ss_pred HHHHHhcCC-ChHHHHHHh-hhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCC--EEEecCCCCCcchhhHHHHHH-
Confidence 222211110 011112223 466774 444567889999999 77777789999 999999 99999887755444
Q ss_pred hcCchhhHhhhccccccceeeEeeeeccCCcee
Q 017380 315 VVGITGLILTKLDGSARGGCVVSVVDELGIPVK 347 (372)
Q Consensus 315 ~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~ 347 (372)
.|..+ .|.||+|+||-.+.+.
T Consensus 746 -------AIney-----~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 746 -------AINEY-----NGGVIMVSHDERLIVE 766 (807)
T ss_pred -------HHHhc-----cCcEEEEecccceeee
Confidence 44433 5789999999988743
No 409
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=8.7e-16 Score=144.51 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=53.8
Q ss_pred cchhhHhHHHHHHH---HHHHHHh----CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 267 TNYSLMEELVACKK---AVGKVVN----GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 267 ~~~~~~~eLS~G~r---~iAral~----~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
..+.++.+||+|++ ++|++++ .+|+ ++++|| |+++|+..+..++. ++.++. +|.++|++
T Consensus 159 ~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~--illlDEPt~~ld~~~~~~~~~--------~l~~~~---~g~~ii~i 225 (251)
T cd03273 159 VWKESLTELSGGQRSLVALSLILALLLFKPAP--MYILDEVDAALDLSHTQNIGR--------MIKTHF---KGSQFIVV 225 (251)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHhhccCCC--EEEEeCCCcCCCHHHHHHHHH--------HHHHHc---CCCEEEEE
Confidence 34567899999999 9999887 5778 999999 99999999988877 777774 37899999
Q ss_pred eeccC
Q 017380 339 VDELG 343 (372)
Q Consensus 339 sH~~~ 343 (372)
||+..
T Consensus 226 SH~~~ 230 (251)
T cd03273 226 SLKEG 230 (251)
T ss_pred ECCHH
Confidence 99943
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=7.9e-15 Score=133.38 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=94.7
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh-hCcceeEeccccccHH
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER-TGCEIVVAEGEKAKAS 239 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~-~~v~~~~~~~~~~~~~ 239 (372)
+++++++.+| +.+|+||||+||||++..|...+. |+... ..|......+...+.. ..+.+ .....+...
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~----~~r~~~~~~~i~~~~~~~~i~~-~~~~~~~~~- 82 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASD----TNRGSSLKDLIKDGESSAKITV-TLKNQGLDA- 82 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCccc----ccccccHHHHhhCCCCeEEEEE-EEEcCCccC-
Confidence 4556666665 889999999999999998875443 22211 0111111111111111 11111 112211111
Q ss_pred HHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH----hCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV----NGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral----~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
.... .. ....++.++.. .+..++.+.+||+|++ .||+++ +.+|+ ++++|| ++|+|...+..+
T Consensus 83 ~~~~-~~---~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~--illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 83 NPLC-VL---SQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESP--FRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred CcCC-HH---HHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCC--EEEecCcccccCHHHHHHH
Confidence 0000 00 01223333422 4556788999999999 888888 58999 999999 999999999777
Q ss_pred HhhhcCchhhHhhhccccc-cceeeEeeeeccCCceee
Q 017380 312 FNDVVGITGLILTKLDGSA-RGGCVVSVVDELGIPVKF 348 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~-~gg~vi~isH~~~~pi~~ 348 (372)
.+ +|.++.... .+.+||+++|++.....+
T Consensus 153 ~~--------~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 153 TD--------LLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred HH--------HHHHHHhcCCCcEEEEEECCcccccccc
Confidence 77 676653211 235899999999877544
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.57 E-value=7.7e-15 Score=150.88 Aligned_cols=161 Identities=22% Similarity=0.215 Sum_probs=105.1
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc-ccc---hhhhhHHHHHHHhhCcceeEecccc
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD-TFR---AAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d-~~r---~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
+++++|++++|+-+.|.|+|||||||+++.|||+.+--+|+|.+-.+. ++= ..+.. ...+.+.+.+|. ...
T Consensus 409 l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p-~GtLre~l~YP~-~~~--- 483 (604)
T COG4178 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP-QGTLREALCYPN-AAP--- 483 (604)
T ss_pred eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-CccHHHHHhCCC-CCC---
Confidence 678999999999999999999999999999999998777888774221 110 00000 012222222322 100
Q ss_pred ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 236 AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
..+...+.+.+... +.. +.+++.+..++--..||+|++ ++||.+.++|+ +++||| |+++|+..+..+
T Consensus 484 ~~~d~~l~~vL~~v---gL~----~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~--~v~LDEATsALDe~~e~~l 554 (604)
T COG4178 484 DFSDAELVAVLHKV---GLG----DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPK--WVFLDEATSALDEETEDRL 554 (604)
T ss_pred CCChHHHHHHHHHc---CcH----HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCC--EEEEecchhccChHHHHHH
Confidence 01112222222211 111 111222223334468999999 99999999999 999999 999999999888
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+. .+..- -.+.++|+|.|...++
T Consensus 555 ~q--------~l~~~---lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 555 YQ--------LLKEE---LPDATVISVGHRPTLW 577 (604)
T ss_pred HH--------HHHhh---CCCCEEEEeccchhhH
Confidence 87 43331 1478999999998886
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=3.7e-15 Score=162.02 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=125.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
+-++|++=-+.||..++|+|+|||||||||+.|||.... -.|+|.+.|... .| ..++++.|. +.|.+.
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~------~q-~tF~R~~GY---vqQ~Di 874 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPK------DQ-ETFARVSGY---VEQQDI 874 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeC------ch-hhhccccce---eecccc
Confidence 446777766889999999999999999999999998642 457888876543 22 456666665 445544
Q ss_pred ccHHHHHHHHHHhh------------hhhchHHHHHHhhCCCccchhhHhH----HHHHHH---HHHHHHhCCC-CceEE
Q 017380 236 AKASSVLSQAVKRG------------KEQGFDIVLCDTSGRLHTNYSLMEE----LVACKK---AVGKVVNGAP-NEILL 295 (372)
Q Consensus 236 ~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~~~~~~~~~e----LS~G~r---~iAral~~~P-~~~lL 295 (372)
..+...+++.+... .+..+-+.+++.+++.+..+..++. ||..|| .||--|+.+| . +|
T Consensus 875 H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~--il 952 (1391)
T KOG0065|consen 875 HSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSS--IL 952 (1391)
T ss_pred cCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCce--eE
Confidence 44544555444321 1112333344799999999988888 999999 6766778899 6 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+||| |+|||..+...++. ++.|+. ..|.+|+...|....-
T Consensus 953 FLDEPTSGLDsqaA~~i~~--------~lrkla--~tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMR--------FLRKLA--DTGQTILCTIHQPSID 993 (1391)
T ss_pred EecCCCCCccHHHHHHHHH--------HHHHHH--hcCCeEEEEecCCcHH
Confidence 9999 99999999988888 999997 5799999999997764
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=3.2e-14 Score=140.08 Aligned_cols=184 Identities=19% Similarity=0.214 Sum_probs=121.2
Q ss_pred HHHHHHHHhccCCCCCcccee-ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeE----EEeeccccchhhhhHHHHH
Q 017380 146 LKNSVLDLLTKKGNKTELQLG-YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKI----LMAAGDTFRAAASDQLEIW 220 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~-i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V----~l~~~d~~r~~a~eql~~~ 220 (372)
|.+.+..+||.+.- +=..+. ..+|+|++|+|+||.||||.+++|+|.++|.=|+. .|+ +..+.-+-..++.|
T Consensus 76 Le~e~vHRYg~NgF-kL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wd--eVi~~FrGtELq~Y 152 (591)
T COG1245 76 LEEEVVHRYGVNGF-KLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWD--EVIKRFRGTELQNY 152 (591)
T ss_pred hcccceeeccCCce-EEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHH--HHHHHhhhhHHHHH
Confidence 44566778875421 111122 36899999999999999999999999999975432 221 11111111223433
Q ss_pred HHhh-CcceeEecccc---ccHH---HHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 221 AERT-GCEIVVAEGEK---AKAS---SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 221 ~~~~-~v~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
...+ .-...+...++ ..|. ..+.+.+......+.-..+++.+++....++.+++||||+- +||.++..+.
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccC
Confidence 3332 11111111111 1111 11223344333434333445899999999999999999987 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
+ +.+.|| ++-||..++...-. ++..+.+ .+..||+|.||+-+
T Consensus 233 D--vY~FDEpsSyLDi~qRl~~ar--------~Irel~~--~~k~ViVVEHDLav 275 (591)
T COG1245 233 D--VYFFDEPSSYLDIRQRLNAAR--------VIRELAE--DGKYVIVVEHDLAV 275 (591)
T ss_pred C--EEEEcCCcccccHHHHHHHHH--------HHHHHhc--cCCeEEEEechHHH
Confidence 9 999999 99999999988877 8888873 38899999999865
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.53 E-value=2.9e-14 Score=138.98 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=117.9
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh--------hhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL--------KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l--------~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
..++|+||.+++|++++++|++|+||||++++|+|.. +|++|.|.+ ..++ .++ -..+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~v-p~nt--~~a--------~iPge--- 462 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV-PKNT--VSA--------LIPGE--- 462 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceec-cccc--hhh--------ccCcc---
Confidence 3578999999999999999999999999999999874 577888888 3343 111 01111
Q ss_pred EeccccccHHHHHHHHHHh-hhhhchHHHHHHhhCCCcc--chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCC
Q 017380 230 VAEGEKAKASSVLSQAVKR-GKEQGFDIVLCDTSGRLHT--NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTG 302 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~dt~G~~~~--~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsg 302 (372)
. .+... ...+.+.+.. ...-+..+-++..+|+++. -....++||.||+ .||+++...|. +++.|| .+.
T Consensus 463 ~--Ep~f~-~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn--~~~iDEF~Ah 537 (593)
T COG2401 463 Y--EPEFG-EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN--VLLIDEFAAH 537 (593)
T ss_pred c--ccccC-chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC--cEEhhhhhhh
Confidence 0 00000 1111111111 1111223334467788653 3577899999999 99999999999 999999 899
Q ss_pred CCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCccc
Q 017380 303 LNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGV 355 (372)
Q Consensus 303 lD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v 355 (372)
||..+..++.. =|.++.. ..|.|++++||+.++- +.|++.|...
T Consensus 538 LD~~TA~rVAr--------kiselaR-e~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 538 LDELTAVRVAR--------KISELAR-EAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred cCHHHHHHHHH--------HHHHHHH-HhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99998877776 4566653 4689999999998763 5577777654
No 415
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=4.4e-15 Score=139.49 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=54.2
Q ss_pred hhhHhHHHHHHH---HHHHHHhCC----CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeee
Q 017380 269 YSLMEELVACKK---AVGKVVNGA----PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVD 340 (372)
Q Consensus 269 ~~~~~eLS~G~r---~iAral~~~----P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH 340 (372)
+..+.+||+|++ .||++++.+ |+ ++++|| |+++|+..+..+.. ++.++. .+|.++|++||
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~--~lllDEPt~~LD~~~~~~l~~--------~i~~~~--~~g~~vi~isH 217 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAP--FFVLDEVDAALDNTNVGKVAS--------YIREQA--GPNFQFIVISL 217 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCC--EEEEecccccCCHHHHHHHHH--------HHHHhc--cCCcEEEEEEC
Confidence 456789999999 999999754 88 999999 99999999977776 777775 44889999999
Q ss_pred ccCC
Q 017380 341 ELGI 344 (372)
Q Consensus 341 ~~~~ 344 (372)
+..+
T Consensus 218 ~~~~ 221 (247)
T cd03275 218 KEEF 221 (247)
T ss_pred CHHH
Confidence 9665
No 416
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=139.34 Aligned_cols=194 Identities=20% Similarity=0.273 Sum_probs=136.6
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc---c
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK---A 236 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~---~ 236 (372)
.+|+||++.+|||++|.|-=|+|+|-++..|.|..++.+|+|.++|.........+ +-..|+.+ ++.+.. .
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~-----Ai~~Gi~~-v~EDRk~~Gl 348 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD-----AIKAGIAY-VPEDRKSEGL 348 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH-----HHHcCCEe-CCcccccCcC
Confidence 46899999999999999999999999999999988889999999776532211111 11224333 222211 0
Q ss_pred cHHHHHHHH--------------HHhhhhhchHHHHHHhhCC-CccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 237 KASSVLSQA--------------VKRGKEQGFDIVLCDTSGR-LHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 237 ~~~~~~~~~--------------~~~~~~~~~d~vl~dt~G~-~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
.....+.++ +.....+....-.+..+++ .+..+..+..||||.+ .|||.|..+|+ +|+||
T Consensus 349 ~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~--vLilD 426 (500)
T COG1129 349 VLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPK--VLILD 426 (500)
T ss_pred cCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCC--EEEEC
Confidence 000001100 1111111111122234454 3445688999999998 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCC--CCCCHHHHHHH
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDL--QPFDAEAFVNA 369 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl--~~~~~~~~v~~ 369 (372)
| |.|.|.-...+++. ++.++. ++|.+||++|.++... |..+..|+.+..+ ...+.+.+...
T Consensus 427 EPTRGIDVGAK~eIy~--------li~~lA--~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~tee~im~~ 496 (500)
T COG1129 427 EPTRGIDVGAKAEIYR--------LIRELA--AEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAA 496 (500)
T ss_pred CCCcCcccchHHHHHH--------HHHHHH--HCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCCHHHHHHH
Confidence 9 99999999999998 999997 6799999999987654 6788899998544 34788888776
Q ss_pred hc
Q 017380 370 IF 371 (372)
Q Consensus 370 l~ 371 (372)
.+
T Consensus 497 a~ 498 (500)
T COG1129 497 AF 498 (500)
T ss_pred hh
Confidence 54
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.49 E-value=6.7e-14 Score=127.33 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=90.9
Q ss_pred CCccceeccCC-eEEEEEcCCCCcHHHHHHHHH-hhhhhcCC-eEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc
Q 017380 160 KTELQLGYRKP-AVVLIVGVNGGGKTTSLGKLA-YRLKNEGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA 236 (372)
Q Consensus 160 ~~~isl~i~~g-~vi~lvGpNGsGKTTll~~La-g~l~~~~G-~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~ 236 (372)
..+++|++.+| ++++|+||||+||||+++.|+ +.+.++.| .|-. ... ..+++ +.+.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~~---------------~~~~~-~~~~--- 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AEG---------------SSLPV-FENI--- 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--ccc---------------ccCcC-ccEE---
Confidence 34678999988 589999999999999999998 44444433 2211 000 00110 0000
Q ss_pred cHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHH
Q 017380 237 KASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREF 312 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~ 312 (372)
+ ...+..+.....+..+|+|++ .++++ +.+|+ ++++|| ++|+|+..+..+.
T Consensus 76 ---------------------~-~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~--llllDEp~~glD~~~~~~i~ 130 (200)
T cd03280 76 ---------------------F-ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDS--LVLLDELGSGTDPVEGAALA 130 (200)
T ss_pred ---------------------E-EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCc--EEEEcCCCCCCCHHHHHHHH
Confidence 0 011222233445578899998 44444 46888 999999 9999999887775
Q ss_pred hhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 313 ~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
.. ++..+. ..+.++|++||+..+. +..+.+|+.+
T Consensus 131 ~~-------~l~~l~--~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 131 IA-------ILEELL--ERGALVIATTHYGELKAYAYKREGVENASME 169 (200)
T ss_pred HH-------HHHHHH--hcCCEEEEECCHHHHHHHHhcCCCeEEEEEE
Confidence 53 667665 4578999999986653 3345566654
No 418
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=1.1e-13 Score=153.38 Aligned_cols=176 Identities=17% Similarity=0.233 Sum_probs=118.8
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee-Eecccccc
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV-VAEGEKAK 237 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~-~~~~~~~~ 237 (372)
.++|+||++++|+.++|||+.|||||+|+..|.|.++..+|+|.+.|.- +++.|-. |-..-.+..- .+..+ .+
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsi----aYv~Q~p-WI~ngTvreNILFG~~-~d 609 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV----AYVPQQP-WIQNGTVRENILFGSP-YD 609 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeE----EEecccc-HhhCCcHHHhhhcCcc-cc
Confidence 5889999999999999999999999999999999999999999996642 2222211 1111000000 11110 00
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
.....+.++.... +.|.-+. ..|=...-.++.-.|||||| .+|||+.++.+ +.+||. .+.+|...-..+|+
T Consensus 610 -~~rY~~Vi~aC~L-~~Dle~L-p~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad--IYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 610 -EERYDKVIKACAL-KKDLEIL-PFGDLTEIGERGINLSGGQKQRISLARAVYQDAD--IYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred -HHHHHHHHHHccC-HhHHhhc-CCCCcceecCCccCCcHhHHHHHHHHHHHhccCC--EEEEcCcchhhhHhhhHHHHH
Confidence 1111122222111 1121121 11212223466678999999 99999999999 999999 99999999889999
Q ss_pred hhcCchhhHhhhccccccceeeEeeeeccCC-c----eeeeccCccc
Q 017380 314 DVVGITGLILTKLDGSARGGCVVSVVDELGI-P----VKFVGVGEGV 355 (372)
Q Consensus 314 ~~~~~tgiiltkld~t~~gg~vi~isH~~~~-p----i~~i~~Ge~v 355 (372)
+ .+..+ -+++|+|.+||.+.. | |..+.+|+.+
T Consensus 685 ~-------ci~~~---L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 685 E-------CIRGL---LRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred H-------HHHhh---hcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 7 66544 357999999998874 2 7788999876
No 419
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.44 E-value=7.3e-13 Score=150.43 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=66.0
Q ss_pred HHhhCCCcc-chhhHhHHHHHHH---HHHHHHh---CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 259 CDTSGRLHT-NYSLMEELVACKK---AVGKVVN---GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 259 ~dt~G~~~~-~~~~~~eLS~G~r---~iAral~---~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
++.+|+.+. .++.+.+||+||+ .||++|+ .+|+ +||||| |+|||+..+.++++ +|.++. +
T Consensus 793 L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~--LLILDEPTsGLD~~~~~~Ll~--------lL~~L~--~ 860 (1809)
T PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPT--LYVLDEPTTGLHTHDIKALIY--------VLQSLT--H 860 (1809)
T ss_pred HHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--h
Confidence 356788776 6889999999999 9999997 5899 999999 99999999988887 888886 4
Q ss_pred cceeeEeeeeccCCc
Q 017380 331 RGGCVVSVVDELGIP 345 (372)
Q Consensus 331 ~gg~vi~isH~~~~p 345 (372)
+|.+||+++|+++..
T Consensus 861 ~G~TVIiIsHdl~~i 875 (1809)
T PRK00635 861 QGHTVVIIEHNMHVV 875 (1809)
T ss_pred cCCEEEEEeCCHHHH
Confidence 588999999999875
No 420
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.44 E-value=6.6e-13 Score=144.59 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=65.1
Q ss_pred HHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCC---CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 259 CDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAP---NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 259 ~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P---~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
++.+|+.+ ..++.+.+||+||+ .||++|+.+| + ++|||| |+|||+..+..+++ +|.++. +
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~--llILDEPtsGLD~~~~~~L~~--------~L~~l~--~ 881 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKT--LYILDEPTTGLHFEDIRKLLE--------VLHRLV--D 881 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCe--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--h
Confidence 35678876 46788999999999 9999999999 7 999999 99999999988887 888886 4
Q ss_pred cceeeEeeeeccCCc
Q 017380 331 RGGCVVSVVDELGIP 345 (372)
Q Consensus 331 ~gg~vi~isH~~~~p 345 (372)
+|.+||+++|+++..
T Consensus 882 ~G~TVIiitH~~~~i 896 (943)
T PRK00349 882 KGNTVVVIEHNLDVI 896 (943)
T ss_pred CCCEEEEEecCHHHH
Confidence 588999999999773
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=6.3e-13 Score=121.48 Aligned_cols=135 Identities=17% Similarity=0.112 Sum_probs=91.7
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
...++++++..+|++++|+||||+||||+++.++++.-- .+.|.++ ......
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------------a~~G~~v-pa~~~~-- 68 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------------AQIGCFV-PAEYAT-- 68 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------------HHcCCCc-chhhcC--
Confidence 457789999999999999999999999999999988411 1123221 000000
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHH--HhCCCCceEEEEcC-CCCCCHHHHHHHHhh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV--VNGAPNEILLVLDG-TTGLNMLPQAREFND 314 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAra--l~~~P~~~lLvLDE-tsglD~~~~~~~~~~ 314 (372)
..-.+.++ ..++..+...+..+.+|++++.+..+ ++.+|+ ++++|| +.|+|+.....+...
T Consensus 69 -------------l~~~d~I~-~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~--lvllDE~~~gt~~~~~~~l~~~ 132 (204)
T cd03282 69 -------------LPIFNRLL-SRLSNDDSMERNLSTFASEMSETAYILDYADGDS--LVLIDELGRGTSSADGFAISLA 132 (204)
T ss_pred -------------ccChhhee-EecCCccccchhhhHHHHHHHHHHHHHHhcCCCc--EEEeccccCCCCHHHHHHHHHH
Confidence 00011111 23344444556677888888833333 456788 999999 999999887666554
Q ss_pred hcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 315 VVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 315 ~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+. ..+.++|++||+.++.
T Consensus 133 -------il~~l~--~~~~~~i~~TH~~~l~ 154 (204)
T cd03282 133 -------ILECLI--KKESTVFFATHFRDIA 154 (204)
T ss_pred -------HHHHHH--hcCCEEEEECChHHHH
Confidence 777776 4588999999998874
No 422
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=132.13 Aligned_cols=167 Identities=18% Similarity=0.217 Sum_probs=106.7
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec----cccchhh--hhHHHHHHHhhCcceeEec-
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG----DTFRAAA--SDQLEIWAERTGCEIVVAE- 232 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~----d~~r~~a--~eql~~~~~~~~v~~~~~~- 232 (372)
++++||++..|+.+.|.||||||||+|++.|+|+.+..+|++..-.. |.+=... .--+....++.=.|..-.+
T Consensus 451 ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~ 530 (659)
T KOG0060|consen 451 IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDM 530 (659)
T ss_pred eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccc
Confidence 46799999999999999999999999999999999888888765321 1110000 0001111222222210000
Q ss_pred cccccHHHHHHHHHHhhhhhchHHHHHHhhCCCc--cchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHH
Q 017380 233 GEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLH--TNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNML 306 (372)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~--~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~ 306 (372)
.........+.+.++.. .... |++..|..+ ...+-++.||+|++ ++||.+.++|+ +-+||| |+.++..
T Consensus 531 ~~~~~~d~~i~r~Le~v---~L~h-l~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk--~AiLDE~TSAv~~d 604 (659)
T KOG0060|consen 531 DSKSASDEDILRILENV---QLGH-LLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK--FAILDECTSAVTED 604 (659)
T ss_pred cccCCCHHHHHHHHHHh---hhhh-HHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc--eEEeechhhhccHH
Confidence 00000011122222221 1122 335556554 55678899999999 99999999999 999999 9999987
Q ss_pred HHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 307 PQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 307 ~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
....++. .+. +.|.|.|.|+|+-.+-
T Consensus 605 vE~~~Yr--------~~r-----~~giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 605 VEGALYR--------KCR-----EMGITFISVGHRKSLW 630 (659)
T ss_pred HHHHHHH--------HHH-----HcCCeEEEeccHHHHH
Confidence 7766666 433 3489999999987653
No 423
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=3.4e-12 Score=117.40 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=51.7
Q ss_pred cchhhHhHHHHHHH---HHH----HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccc-eeeEe
Q 017380 267 TNYSLMEELVACKK---AVG----KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARG-GCVVS 337 (372)
Q Consensus 267 ~~~~~~~eLS~G~r---~iA----ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~g-g~vi~ 337 (372)
..+..+.+||+||+ .++ ++++.+|+ ++++|| ++++|+..+..++. ++.++.. ..| .++|+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~--llllDEP~~~LD~~~~~~i~~--------~l~~~~~-~~g~~~vii 187 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCP--FRVVDEINQGMDPTNERKVFD--------MLVETAC-KEGTSQYFL 187 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCC--EEEEecccccCCHHHHHHHHH--------HHHHHhh-cCCCceEEE
Confidence 34667889999999 322 33457999 999999 99999999988887 7777652 224 47999
Q ss_pred eeeccCCc
Q 017380 338 VVDELGIP 345 (372)
Q Consensus 338 isH~~~~p 345 (372)
+||++...
T Consensus 188 ith~~~~~ 195 (213)
T cd03277 188 ITPKLLPG 195 (213)
T ss_pred EchhhccC
Confidence 99886544
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.38 E-value=1.2e-12 Score=119.29 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=78.6
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh-hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHH
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL-KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 240 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l-~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~ 240 (372)
+.++++.+|++++|+||||+||||+++.|++.. ..+.|.... ... ..+++ ..+..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~--~~~---------------~~i~~-~dqi~------ 76 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP--AES---------------ASIPL-VDRIF------ 76 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc--ccc---------------cccCC-cCEEE------
Confidence 456677789999999999999999999999543 333332211 110 01111 00000
Q ss_pred HHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH--HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcC
Q 017380 241 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK--AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVG 317 (372)
Q Consensus 241 ~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r--~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~ 317 (372)
...+........+..++.+++ ..+.++..+|+ ++++|| ++|+|+..+..+...
T Consensus 77 -------------------~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~--llllDEp~~gld~~~~~~l~~~--- 132 (202)
T cd03243 77 -------------------TRIGAEDSISDGRSTFMAELLELKEILSLATPRS--LVLIDELGRGTSTAEGLAIAYA--- 132 (202)
T ss_pred -------------------EEecCcccccCCceeHHHHHHHHHHHHHhccCCe--EEEEecCCCCCCHHHHHHHHHH---
Confidence 000111111122334455555 22233456888 999999 999999888666553
Q ss_pred chhhHhhhccccccceeeEeeeeccCCc
Q 017380 318 ITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 318 ~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+. ..+.++|++||+.++.
T Consensus 133 ----ll~~l~--~~~~~vi~~tH~~~~~ 154 (202)
T cd03243 133 ----VLEHLL--EKGCRTLFATHFHELA 154 (202)
T ss_pred ----HHHHHH--hcCCeEEEECChHHHH
Confidence 566665 4578999999998775
No 425
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=5.7e-12 Score=137.06 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=63.5
Q ss_pred HhhCCCc-cchhhHhHHHHHHH---HHHHHHhC---CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccc
Q 017380 260 DTSGRLH-TNYSLMEELVACKK---AVGKVVNG---APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSAR 331 (372)
Q Consensus 260 dt~G~~~-~~~~~~~eLS~G~r---~iAral~~---~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~ 331 (372)
+.+|+.+ ..++.+.+||+||+ .||++|+. +|+ ++|||| |+|||+..+..+++ +|.++. ++
T Consensus 813 ~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~--llILDEPtsgLD~~~~~~L~~--------~L~~l~--~~ 880 (924)
T TIGR00630 813 CDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRT--LYILDEPTTGLHFDDIKKLLE--------VLQRLV--DQ 880 (924)
T ss_pred HHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hC
Confidence 5678865 35788999999999 99999996 488 999999 99999999988887 888876 45
Q ss_pred ceeeEeeeeccCCc
Q 017380 332 GGCVVSVVDELGIP 345 (372)
Q Consensus 332 gg~vi~isH~~~~p 345 (372)
|.+||+++|++...
T Consensus 881 G~TVIvi~H~~~~i 894 (924)
T TIGR00630 881 GNTVVVIEHNLDVI 894 (924)
T ss_pred CCEEEEEeCCHHHH
Confidence 89999999999864
No 426
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.1e-13 Score=132.28 Aligned_cols=162 Identities=22% Similarity=0.149 Sum_probs=106.1
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHH
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 240 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~ 240 (372)
.+++++.+--..+++||+||.||||+++++.+-+.|..|.+.+... .|.+..-|...-. +... .
T Consensus 381 ~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~--l~~~------------v 444 (582)
T KOG0062|consen 381 KQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDF--LDKN------------V 444 (582)
T ss_pred hccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhH--HHHH------------h
Confidence 3444555555689999999999999999999999998888877443 3443333322100 0000 0
Q ss_pred HHHHHHHhh----hhhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 241 VLSQAVKRG----KEQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 241 ~~~~~~~~~----~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
...+.+... ..+.+...+ ..+|+... ....+..|||||+ ++|.....+|+ +||||| |+.||..+.-.+
T Consensus 445 ~~vd~~~~~~pG~~~ee~r~hl-~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph--lLVLDEPTNhLD~dsl~AL 521 (582)
T KOG0062|consen 445 NAVDFMEKSFPGKTEEEIRRHL-GSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH--LLVLDEPTNHLDRDSLGAL 521 (582)
T ss_pred HHHHHHHHhCCCCCHHHHHHHH-HhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc--EEEecCCCccccHHHHHHH
Confidence 001111111 122334444 46688643 4555889999999 99999999999 999999 999998776444
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEG 354 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~ 354 (372)
-. -|. .-.|.||+||||..+. ++.+.+|..
T Consensus 522 ~~--------Al~-----~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 522 AK--------ALK-----NFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 (582)
T ss_pred HH--------HHH-----hcCCcEEEEECcHHHHhhcCceeEEEcCCcE
Confidence 33 232 3468899999999875 555666643
No 427
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.32 E-value=2.9e-12 Score=116.68 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.1
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+|+ ++++|| ++|+|+.....++.. ++..+. .++.++|++||+++..
T Consensus 104 ~~p~--llllDEp~~glD~~~~~~l~~~-------ll~~l~--~~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPV--LFLLDEIFKGTNSRERQAASAA-------VLKFLK--NKNTIGIISTHDLELA 151 (199)
T ss_pred CCCe--EEEEecccCCCCHHHHHHHHHH-------HHHHHH--HCCCEEEEEcCcHHHH
Confidence 4788 999999 999999988666543 677775 4588999999998764
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.30 E-value=3.3e-12 Score=114.87 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLA-YRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGK 250 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~La-g~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 250 (372)
+++|.||||+||||+++.++ ..+..+.|..... +. ..+++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a--~~---------------~~~~~---------------------- 41 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA--ES---------------AELPV---------------------- 41 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee--hh---------------eEecc----------------------
Confidence 47899999999999999998 4444444443221 11 11111
Q ss_pred hhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhC--CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcc
Q 017380 251 EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNG--APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLD 327 (372)
Q Consensus 251 ~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~--~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld 327 (372)
++.++ ..++..+...+..+.+|++++.+++++.. +|+ ++++|| ++|+|+.....++.. ++..+.
T Consensus 42 ---~d~il-~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~--llllDEp~~g~d~~~~~~~~~~-------~l~~l~ 108 (185)
T smart00534 42 ---FDRIF-TRIGASDSLAQGLSTFMVEMKETANILKNATENS--LVLLDELGRGTSTYDGVAIAAA-------VLEYLL 108 (185)
T ss_pred ---cceEE-EEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe--EEEEecCCCCCCHHHHHHHHHH-------HHHHHH
Confidence 00001 22344444566678899999988888887 888 999999 999999987776654 677665
Q ss_pred ccccceeeEeeeeccCCc
Q 017380 328 GSARGGCVVSVVDELGIP 345 (372)
Q Consensus 328 ~t~~gg~vi~isH~~~~p 345 (372)
+ ..+.++|++||+.++.
T Consensus 109 ~-~~~~~iii~TH~~~l~ 125 (185)
T smart00534 109 E-KIGALTLFATHYHELT 125 (185)
T ss_pred h-cCCCeEEEEecHHHHH
Confidence 2 2378999999998754
No 429
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=122.75 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=135.1
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc-cchhhhhHHHHHHHhhCcceeEeccc--
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT-FRAAASDQLEIWAERTGCEIVVAEGE-- 234 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~-~r~~a~eql~~~~~~~~v~~~~~~~~-- 234 (372)
..++++||++..|||++|.|..|-|-+.|+..|+|+.++.+|+|.+.+.|. -|....+. ...|+.+ ++.+.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~-----r~~G~~~-VPedR~~ 345 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER-----RRLGLAY-VPEDRHG 345 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH-----HhcCCcc-CChhhcc
Confidence 346789999999999999999999999999999999998889999999886 23222211 1223322 22211
Q ss_pred -cccHHHHHHHH----------------HHhhhhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 235 -KAKASSVLSQA----------------VKRGKEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 235 -~~~~~~~~~~~----------------~~~~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.-+...+.++ +..........-+++.++.. .....+...||||.+ .+||-+..+|+
T Consensus 346 ~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~-- 423 (501)
T COG3845 346 HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPD-- 423 (501)
T ss_pred CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCC--
Confidence 00000000000 00011122233345666664 445667899999988 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC--CCCCCCHH
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE--DLQPFDAE 364 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~--Dl~~~~~~ 364 (372)
+||+.. |.|+|.-....+.+ -+.+.. +.|.+|+.+|.|++.. |..+..|+.+. +-..++++
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~--------~l~e~r--~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~t~~ 493 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHE--------RLLELR--DAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATRE 493 (501)
T ss_pred EEEEcCCCccccHHHHHHHHH--------HHHHHH--hcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccCCHH
Confidence 999999 99999988877776 444444 5689999999999875 66788998884 45556787
Q ss_pred HHHHHh
Q 017380 365 AFVNAI 370 (372)
Q Consensus 365 ~~v~~l 370 (372)
++-..+
T Consensus 494 ~iG~lM 499 (501)
T COG3845 494 EIGLLM 499 (501)
T ss_pred HHHHhh
Confidence 765544
No 430
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.28 E-value=1.1e-11 Score=109.08 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=81.2
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHH
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS 243 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~ 243 (372)
++.+.++.++.|+||||+||||+++.+...+-...+++.- ..+. ..+... .......
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~--------------~~g~~~--~~~~~~~------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV--------------KAGCIV--AAVSAEL------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc--------------cCCCcc--eeeEEEE------
Confidence 3444456799999999999999999988877665444433 1110 111111 1000000
Q ss_pred HHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC----CCCceEEEEcC-CCCCCHHHHHHHHhhh
Q 017380 244 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG----APNEILLVLDG-TTGLNMLPQAREFNDV 315 (372)
Q Consensus 244 ~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~----~P~~~lLvLDE-tsglD~~~~~~~~~~~ 315 (372)
+.. . .+||+|++ .+++++.. +|+ ++++|| ++|+|+.....+..
T Consensus 72 -------------i~~-~-----------~~lS~G~~~~~~la~~L~~~~~~~~~--llllDEp~~gld~~~~~~l~~-- 122 (162)
T cd03227 72 -------------IFT-R-----------LQLSGGEKELSALALILALASLKPRP--LYILDEIDRGLDPRDGQALAE-- 122 (162)
T ss_pred -------------ehh-e-----------eeccccHHHHHHHHHHHHhcCCCCCC--EEEEeCCCCCCCHHHHHHHHH--
Confidence 000 0 11888888 88888876 678 999999 99999999877776
Q ss_pred cCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 316 VGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 316 ~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+.++.. . +.++|++||+.++.
T Consensus 123 ------~l~~~~~-~-~~~vii~TH~~~~~ 144 (162)
T cd03227 123 ------AILEHLV-K-GAQVIVITHLPELA 144 (162)
T ss_pred ------HHHHHHh-c-CCEEEEEcCCHHHH
Confidence 5555532 3 77999999998764
No 431
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.26 E-value=3.4e-12 Score=127.70 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=103.0
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH-----HhhCcceeEecc-
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA-----ERTGCEIVVAEG- 233 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~-----~~~~v~~~~~~~- 233 (372)
+..++|.+++|--+.|+||||||||++.++|+|+.+-..|...+-..+ ++-...|..... ++.=+|....+.
T Consensus 498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~--~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN--NIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc--ceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 356889999999999999999999999999999998777765552111 111111110000 000000000000
Q ss_pred ccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHH
Q 017380 234 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQA 309 (372)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~ 309 (372)
........+...+. .-..+.++.-..|. +....-.+.||||++ .+||.+.+.|+ +-+||| |+...+....
T Consensus 576 ~kg~~d~dL~~iL~---~v~L~~i~qr~~g~-da~~dWkd~LsgGekQR~~mARm~yHrPk--yalLDEcTsAvsidvE~ 649 (728)
T KOG0064|consen 576 RKGYTDQDLEAILD---IVHLEHILQREGGW-DAVRDWKDVLSGGEKQRMGMARMFYHRPK--YALLDECTSAVSIDVEG 649 (728)
T ss_pred hcCCCHHHHHHHHH---HhhHHHHHHhccCh-hhhccHHhhccchHHHHHHHHHHHhcCcc--hhhhhhhhcccccchHH
Confidence 00000000000000 01112222212222 222344578999999 99999999999 999999 9887665555
Q ss_pred HHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCCCCCCCH
Q 017380 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVEDLQPFDA 363 (372)
Q Consensus 310 ~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~Dl~~~~~ 363 (372)
.+|+. .. ..|.+.|.|+|+..+- ..| +|+.--.++++++
T Consensus 650 ~i~~~-----------ak--~~gi~llsithrpslwk~h~~ll~~--dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 650 KIFQA-----------AK--DAGISLLSITHRPSLWKYHTHLLEF--DGEGGWQFRALNT 694 (728)
T ss_pred HHHHH-----------HH--hcCceEEEeecCccHHHHHHHHHhc--cCCCCeeeccCCh
Confidence 67762 22 4588999999997764 445 4444334555555
No 432
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.25 E-value=1.5e-11 Score=110.05 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHH---HHHHHHh----CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 275 LVACKK---AVGKVVN----GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 275 LS~G~r---~iAral~----~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
||+|++ .++++++ .+|+ ++++|| ++++|+..+..++. .+.++. .+|.++|+++|+....
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~--llilDEp~~~LD~~~~~~i~~--------~L~~~~--~~g~tiIiiSH~~~~~ 161 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSP--FYVLDEIDAALDPTNRRRVSD--------MIKEMA--KHTSQFIVITLKKEMF 161 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEECCHHHH
Confidence 899999 8899885 6899 999999 99999999977776 777765 3468999999997653
No 433
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=7e-11 Score=109.37 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=79.9
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.+.++++++..++++++|.||||+||||+++.++-. .+-...|.++ +......
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------------------------~~la~~g~~v--pa~~~~~ 70 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------------------------VLMAQIGCFV--PCDSADI 70 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------------------------HHHHHhCCCc--CcccEEE
Confidence 346789999988999999999999999999999921 0111233222 1111000
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHH--hCCCCceEEEEcC-CCC---CCHHHHHHH
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVV--NGAPNEILLVLDG-TTG---LNMLPQARE 311 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral--~~~P~~~lLvLDE-tsg---lD~~~~~~~ 311 (372)
+ -.+.++ +.+|+.+......+.++++++.+++++ +.+|. +++||| ..| +|+......
T Consensus 71 ~--------------~~~~il-~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~s--LvLLDEp~~gT~~lD~~~~~~~ 133 (222)
T cd03285 71 P--------------IVDCIL-ARVGASDSQLKGVSTFMAEMLETAAILKSATENS--LIIIDELGRGTSTYDGFGLAWA 133 (222)
T ss_pred e--------------ccceeE-eeeccccchhcCcChHHHHHHHHHHHHHhCCCCe--EEEEecCcCCCChHHHHHHHHH
Confidence 0 112122 344544433333444445555777887 78888 999999 665 565555322
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
++..+.+ ..+.++|++||...+
T Consensus 134 ----------il~~l~~-~~~~~vlisTH~~el 155 (222)
T cd03285 134 ----------IAEYIAT-QIKCFCLFATHFHEL 155 (222)
T ss_pred ----------HHHHHHh-cCCCeEEEEechHHH
Confidence 3344442 347899999997543
No 434
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2e-11 Score=119.94 Aligned_cols=168 Identities=18% Similarity=0.162 Sum_probs=98.5
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeec-----cccchhh-----hhHHHHHH---HhhC
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAG-----DTFRAAA-----SDQLEIWA---ERTG 225 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~-----d~~r~~a-----~eql~~~~---~~~~ 225 (372)
.+.++.|-.|..+++|||||-|||||++.|+..-- |..=.|++... ++.-+.+ ...+..+- ...+
T Consensus 281 vnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~ 360 (807)
T KOG0066|consen 281 VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMS 360 (807)
T ss_pred eccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999997642 43445655322 1111111 11111111 1111
Q ss_pred cceeEeccccccHHHHHHHHHHh---hh-hhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKR---GK-EQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
. +.-...........+++.+.. .. ..+...+| .-+|.+.. .+++...+|||+| .+||||...|. +|.|
T Consensus 361 q-~e~Gd~taaErl~~v~~ELraiGA~sAEarARRIL-AGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPT--LLML 436 (807)
T KOG0066|consen 361 Q-IEEGDTTAAERLKEVADELRAIGADSAEARARRIL-AGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPT--LLML 436 (807)
T ss_pred H-HHcCchHHHHHHHHHHHHHHHhccccchhHHHHHH-hhcCCChhHhcCCccccCCceeeehhHHHHHhcCce--eeee
Confidence 1 000001111111112222211 11 12233344 35566543 4667778999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|| |+.||......+-+ .+.- ...|+++|+||-++-
T Consensus 437 DEPTNHLDLNAVIWLdN--------YLQg-----WkKTLLIVSHDQgFL 472 (807)
T KOG0066|consen 437 DEPTNHLDLNAVIWLDN--------YLQG-----WKKTLLIVSHDQGFL 472 (807)
T ss_pred cCCccccccceeeehhh--------HHhh-----hhheeEEEecccchH
Confidence 99 99999766644433 4333 347999999998875
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.15 E-value=1.2e-10 Score=107.15 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh-hhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL-KNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l-~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
+.+|+.+.-..+.+++|+||||+||||+++.++... .++.|.+... +..+.+..+|+ ....
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a--~~~~~~~~d~i------------~~~l---- 79 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA--DSATIGLVDKI------------FTRM---- 79 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc--CCcEEeeeeee------------eeee----
Confidence 344555543223899999999999999999998432 2555555441 22222111111 0000
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhc
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVV 316 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~ 316 (372)
...+.+. + +++ ....++... .++++++.+|. ++++|| ++|+|+.....++..
T Consensus 80 --------------~~~~si~-~--~~S----~f~~el~~l--~~~l~~~~~~s--lvllDE~~~gtd~~~~~~~~~a-- 132 (213)
T cd03281 80 --------------SSRESVS-S--GQS----AFMIDLYQV--SKALRLATRRS--LVLIDEFGKGTDTEDGAGLLIA-- 132 (213)
T ss_pred --------------CCccChh-h--ccc----hHHHHHHHH--HHHHHhCCCCc--EEEeccccCCCCHHHHHHHHHH--
Confidence 0000011 1 111 122222222 44556677888 999999 999998876555543
Q ss_pred CchhhHhhhcccc-ccceeeEeeeeccCCce
Q 017380 317 GITGLILTKLDGS-ARGGCVVSVVDELGIPV 346 (372)
Q Consensus 317 ~~tgiiltkld~t-~~gg~vi~isH~~~~pi 346 (372)
++.++... ..+.++|++||+.++..
T Consensus 133 -----il~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 133 -----TIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred -----HHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 67776421 11348999999988753
No 436
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=3.8e-10 Score=107.75 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=50.1
Q ss_pred hhHhHHHHHHH---HHHHHHhC----CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeec
Q 017380 270 SLMEELVACKK---AVGKVVNG----APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDE 341 (372)
Q Consensus 270 ~~~~eLS~G~r---~iAral~~----~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~ 341 (372)
+....||+|++ .+|++++. +|+ ++++|| ++++|+..+..+.. ++.++. ++.++|+++|+
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~--vlllDEp~~~Ld~~~~~~l~~--------~l~~~~---~~~tii~isH~ 232 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVP--TLIFDEIDTGISGEVAQAVGK--------KLKELS---RSHQVLCITHL 232 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCC--EEEEECCccCCCHHHHHHHHH--------HHHHHh---CCCEEEEEech
Confidence 34456999999 67765443 999 999999 99999999987777 777664 36799999999
Q ss_pred cCCc
Q 017380 342 LGIP 345 (372)
Q Consensus 342 ~~~p 345 (372)
..+.
T Consensus 233 ~~~~ 236 (276)
T cd03241 233 PQVA 236 (276)
T ss_pred HHHH
Confidence 8753
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.09 E-value=1.9e-10 Score=123.70 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=85.0
Q ss_pred cceeccCC-eEEEEEcCCCCcHHHHHHHHHhh-hhhcCC-eEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHH
Q 017380 163 LQLGYRKP-AVVLIVGVNGGGKTTSLGKLAYR-LKNEGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAS 239 (372)
Q Consensus 163 isl~i~~g-~vi~lvGpNGsGKTTll~~Lag~-l~~~~G-~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~ 239 (372)
+++.+.++ ++++|+||||+||||+++.|++. +.++.| .|-.. .... +++ +.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~--~~~~---------------~~~-~d~i------ 369 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN--EHSE---------------IPY-FEEI------ 369 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC--cccc---------------ccc-hhhe------
Confidence 56777666 89999999999999999999998 455554 22221 1000 000 0000
Q ss_pred HHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhC--CCCceEEEEcC-CCCCCHHHHHHHHhhhc
Q 017380 240 SVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNG--APNEILLVLDG-TTGLNMLPQAREFNDVV 316 (372)
Q Consensus 240 ~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~--~P~~~lLvLDE-tsglD~~~~~~~~~~~~ 316 (372)
. ...|-.+.....+..+|++++.++.++.. .|. ++++|| ++|+|+.....+...
T Consensus 370 ------------------~-~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~s--LvLlDE~g~GtD~~eg~ala~a-- 426 (771)
T TIGR01069 370 ------------------F-ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENS--LVLFDELGAGTDPDEGSALAIS-- 426 (771)
T ss_pred ------------------e-eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCc--EEEecCCCCCCCHHHHHHHHHH--
Confidence 0 00011111223466788888855555543 777 999999 999999998777543
Q ss_pred CchhhHhhhccccccceeeEeeeeccCCce
Q 017380 317 GITGLILTKLDGSARGGCVVSVVDELGIPV 346 (372)
Q Consensus 317 ~~tgiiltkld~t~~gg~vi~isH~~~~pi 346 (372)
++..+. .+|.++|++||+.++..
T Consensus 427 -----iLe~l~--~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 427 -----ILEYLL--KQNAQVLITTHYKELKA 449 (771)
T ss_pred -----HHHHHH--hcCCEEEEECChHHHHH
Confidence 777775 46889999999988753
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=6.7e-10 Score=102.79 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHh-hhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY-RLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA 236 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag-~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~ 236 (372)
.+.+++++.+.+|++++|+||||+||||+++.+++ .+.++.|..... +..+.+..+++ +......
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a--~~~~~~~~~~i------------~~~~~~~ 84 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA--SSATLSIFDSV------------LTRMGAS 84 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc--CceEEeccceE------------EEEecCc
Confidence 34678999999999999999999999999999999 667888887662 22222211110 0000000
Q ss_pred cHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhh
Q 017380 237 KASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDV 315 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~ 315 (372)
|. + ..|.+ ..+.|+....+.+.. +.+|. ++++|| ..|.|+.....+...
T Consensus 85 ------------------d~-~--~~~~S----tF~~e~~~~~~il~~--~~~~s--LvllDE~~~gT~~~d~~~i~~~- 134 (222)
T cd03287 85 ------------------DS-I--QHGMS----TFMVELSETSHILSN--CTSRS--LVILDELGRGTSTHDGIAIAYA- 134 (222)
T ss_pred ------------------cc-c--ccccc----hHHHHHHHHHHHHHh--CCCCe--EEEEccCCCCCChhhHHHHHHH-
Confidence 00 0 00111 112222222221111 24566 999999 899987776554433
Q ss_pred cCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 316 VGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 316 ~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+.+ ..+.++|++||+.++.
T Consensus 135 ------il~~l~~-~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 135 ------TLHYLLE-EKKCLVLFVTHYPSLG 157 (222)
T ss_pred ------HHHHHHh-ccCCeEEEEcccHHHH
Confidence 7777763 2478999999998874
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.91 E-value=4.1e-09 Score=97.20 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.++++++..+ ++++|+||||+||||+++.+++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 46778887765 899999999999999999998754
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.90 E-value=5.7e-09 Score=99.27 Aligned_cols=39 Identities=26% Similarity=0.156 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
..++|+||||+||||+++.|+|.++|..|+|.+.+.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 569999999999999999999999999999999877653
No 441
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.86 E-value=2.1e-08 Score=114.81 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=62.8
Q ss_pred HhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCC-CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 260 DTSGRLHT-NYSLMEELVACKK---AVGKVVNGAP-NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 260 dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P-~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
..+|+... ..+....||||+. -+|+.|..++ ..+++|||| |+||++....+++. +|.+|. +.|.
T Consensus 1684 ~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~--------~l~~L~--~~g~ 1753 (1809)
T PRK00635 1684 IDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV--------QLRTLV--SLGH 1753 (1809)
T ss_pred HHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH--------HHHHHH--hcCC
Confidence 45688765 4788889999998 8888887541 124999999 99999999988887 888887 6799
Q ss_pred eeEeeeeccCCc
Q 017380 334 CVVSVVDELGIP 345 (372)
Q Consensus 334 ~vi~isH~~~~p 345 (372)
|||+|.|++++.
T Consensus 1754 tvivieH~~~~i 1765 (1809)
T PRK00635 1754 SVIYIDHDPALL 1765 (1809)
T ss_pred eEEEEeCCHHHH
Confidence 999999999875
No 442
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=2e-09 Score=118.07 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=116.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh---cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN---EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~---~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
..++|++.-+++|+.+.++||.||||||+++.|+|-... ..|+|.++|.+.-..-...+. .|.. ...++++...
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~-aY~~--e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTV-AYNS--EQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceE-Eecc--ccccccceeE
Confidence 457899999999999999999999999999999998864 245888877664211110000 0100 0111111111
Q ss_pred cccHHHHHHH---------HHHh-hhhhchHHHHHHhhCCCccch-----hhHhHHHHHHH---HHHHHHhCCCCceEEE
Q 017380 235 KAKASSVLSQ---------AVKR-GKEQGFDIVLCDTSGRLHTNY-----SLMEELVACKK---AVGKVVNGAPNEILLV 296 (372)
Q Consensus 235 ~~~~~~~~~~---------~~~~-~~~~~~d~vl~dt~G~~~~~~-----~~~~eLS~G~r---~iAral~~~P~~~lLv 296 (372)
.......+.+ .+.+ .+.......++.++|+.+..+ ..+.-.||||| .++-.++.++. ++.
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~--~~~ 283 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS--ILF 283 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcc--eee
Confidence 1111111110 0000 001112334557889987654 44567999999 88888889999 999
Q ss_pred EcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC-------ceeeeccCccc
Q 017380 297 LDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI-------PVKFVGVGEGV 355 (372)
Q Consensus 297 LDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~-------pi~~i~~Ge~v 355 (372)
+|| |+|||..+..++.. .+.++.. ..+.++++..+...- -|..+..|+.|
T Consensus 284 ~De~t~GLDSsTal~iik--------~lr~~a~-~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i 341 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIK--------ALRQLAH-ITGATALVSILQPSPEIYDLFDDVILLSEGYQI 341 (1391)
T ss_pred eecccccccHHHHHHHHH--------HHHHHHh-hhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence 999 99999999888877 6777654 335677766665432 26678888776
No 443
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.9e-08 Score=103.38 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=63.7
Q ss_pred HHHHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCC-CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 257 VLCDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAP-NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 257 vl~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P-~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
.|+ .+|+... ..+....||||+. -+|.-|.... ..++.|||| |+||......+++. +|.+|- .
T Consensus 805 tL~-dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~--------VL~rLv--d 873 (935)
T COG0178 805 TLV-DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE--------VLHRLV--D 873 (935)
T ss_pred HHH-HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH--------HHHHHH--h
Confidence 344 4588654 4788889999998 7777777543 456999999 99999999988888 999987 6
Q ss_pred cceeeEeeeeccCCc
Q 017380 331 RGGCVVSVVDELGIP 345 (372)
Q Consensus 331 ~gg~vi~isH~~~~p 345 (372)
+|.|||+|.|++++.
T Consensus 874 ~GnTViVIEHNLdVI 888 (935)
T COG0178 874 KGNTVIVIEHNLDVI 888 (935)
T ss_pred CCCEEEEEecccceE
Confidence 799999999999985
No 444
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=8.4e-08 Score=97.08 Aligned_cols=175 Identities=20% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhh-h-HHHHHHHhhCcceeEecccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAAS-D-QLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~-e-ql~~~~~~~~v~~~~~~~~~ 235 (372)
.+++++ +.+.+|++++|+|+||+||||+++.|+++..++.|.|.+.|.+....... + .+..-...-.+.+ +. ...
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v-v~-~~~ 223 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVV-VA-TSD 223 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE-EE-CCC
Confidence 457788 99999999999999999999999999999999989888876544222110 0 0110000111111 22 111
Q ss_pred ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccc-hhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhh
Q 017380 236 AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTN-YSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFND 314 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~ 314 (372)
..+......... .-.+.+.+.|. |..-.. -.-+..+..-+|.|+-++ ..|+ .+.|+|+.....+..
T Consensus 224 ~~~~~r~~~~~~---a~~iAEyfr~~-g~~Vll~~Dsltr~A~A~rEisl~~-ge~P-------~~~G~dp~~~~~l~~- 290 (438)
T PRK07721 224 QPALMRIKGAYT---ATAIAEYFRDQ-GLNVMLMMDSVTRVAMAQREIGLAV-GEPP-------TTKGYTPSVFAILPK- 290 (438)
T ss_pred CCHHHHHHHHHH---HHHHHHHHHHC-CCcEEEEEeChHHHHHHHHHHHHhc-CCCC-------ccccCCHHHHHHHHH-
Confidence 111111111100 01111222222 221100 011112222233333222 3333 378999988877766
Q ss_pred hcCchhhHhhhccccccce-----eeEeeeeccCCc----eeeeccCccc
Q 017380 315 VVGITGLILTKLDGSARGG-----CVVSVVDELGIP----VKFVGVGEGV 355 (372)
Q Consensus 315 ~~~~tgiiltkld~t~~gg-----~vi~isH~~~~p----i~~i~~Ge~v 355 (372)
++.++.....|. ||++.+||++-| +..+.+|+.+
T Consensus 291 -------ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Iv 333 (438)
T PRK07721 291 -------LLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFV 333 (438)
T ss_pred -------HHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEE
Confidence 777764223453 999999999988 4678899888
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.81 E-value=4.2e-08 Score=87.36 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
++.|.||+|+||||+...++......+.+|.+...+.. .+++..+...++++.. .
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~----~~~~~~~~~~~g~~~~----------~----------- 55 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDLE----------R----------- 55 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHcCCChH----------H-----------
Confidence 36899999999999999887766566778877766532 2333333333443220 0
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHH---------HHHHHHhCCCCceEEEEcC-CCCCC---HHHHHHHHhhhcCc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKK---------AVGKVVNGAPNEILLVLDG-TTGLN---MLPQAREFNDVVGI 318 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---------~iAral~~~P~~~lLvLDE-tsglD---~~~~~~~~~~~~~~ 318 (372)
+ ...|.....+..+.++|+++. ....+...+|+ ++|+|+ ++.+| ......+..
T Consensus 56 ------l-~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~--~lviD~~~~~~~~~~~~~~~~i~~----- 121 (187)
T cd01124 56 ------L-EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAK--RVVIDSVSGLLLMEQSTARLEIRR----- 121 (187)
T ss_pred ------H-HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCC--EEEEeCcHHHhhcChHHHHHHHHH-----
Confidence 0 011222222333333444321 22223346899 999999 88887 444444443
Q ss_pred hhhHhhhccccccceeeEeeeeccCC
Q 017380 319 TGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 319 tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
++..+. ..|.++|+++|+...
T Consensus 122 ---l~~~l~--~~g~tvi~v~~~~~~ 142 (187)
T cd01124 122 ---LLFALK--RFGVTTLLTSEQSGL 142 (187)
T ss_pred ---HHHHHH--HCCCEEEEEeccccC
Confidence 666665 458899999998775
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.80 E-value=1.1e-08 Score=110.39 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=53.2
Q ss_pred CccchhhHhHHHHHHHHHHHHHh--CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeec
Q 017380 265 LHTNYSLMEELVACKKAVGKVVN--GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDE 341 (372)
Q Consensus 265 ~~~~~~~~~eLS~G~r~iAral~--~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~ 341 (372)
.+...+.++.+|++++.+++.+. ..|. ++++|| ++|+|+.....+... ++..+. ..|.++|++||+
T Consensus 381 ~~si~~~lStfS~~m~~~~~Il~~~~~~s--LvLlDE~~~GtDp~eg~ala~a-------ile~l~--~~~~~vIitTH~ 449 (782)
T PRK00409 381 EQSIEQSLSTFSGHMTNIVRILEKADKNS--LVLFDELGAGTDPDEGAALAIS-------ILEYLR--KRGAKIIATTHY 449 (782)
T ss_pred ccchhhchhHHHHHHHHHHHHHHhCCcCc--EEEecCCCCCCCHHHHHHHHHH-------HHHHHH--HCCCEEEEECCh
Confidence 34445667889999995555443 4788 999999 999999988776554 777775 457899999999
Q ss_pred cCCc
Q 017380 342 LGIP 345 (372)
Q Consensus 342 ~~~p 345 (372)
.++.
T Consensus 450 ~el~ 453 (782)
T PRK00409 450 KELK 453 (782)
T ss_pred HHHH
Confidence 8775
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.79 E-value=8.3e-08 Score=82.49 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+++|.||||+||||++..+++...+.++.|.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 4789999999999999999999988889998877664
No 448
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.77 E-value=3.1e-08 Score=97.64 Aligned_cols=185 Identities=17% Similarity=0.167 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhccCCC-CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc------cchhhhhH
Q 017380 144 DALKNSVLDLLTKKGN-KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT------FRAAASDQ 216 (372)
Q Consensus 144 ~~l~~~l~~~~~~~~~-~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~------~r~~a~eq 216 (372)
..|.++.+.+|+.+.- +..+. ...+|++.++||-||.||||-++.++|.++|.-|+--. ..|+ ||.. .
T Consensus 74 ~nl~~etthry~~n~fKlhrlp-~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgs---e 148 (592)
T KOG0063|consen 74 TNLEKETTHRYSANSFKLHRLP-IPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGS---E 148 (592)
T ss_pred hhHhhhhhhhhcccceeeccCC-CCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhH---H
Confidence 3456677778875421 22111 13589999999999999999999999999987554322 2221 2211 1
Q ss_pred HHHHHHhhCcce-e-E--eccccccHHH---HHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 217 LEIWAERTGCEI-V-V--AEGEKAKASS---VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 217 l~~~~~~~~v~~-~-~--~~~~~~~~~~---~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
++.|..+..... . . .+.-...|.. .+...+.....++.....++...+.+..++-+++||||+- +||.+.
T Consensus 149 lq~yftk~le~~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~ 228 (592)
T KOG0063|consen 149 LQNYFTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVC 228 (592)
T ss_pred HhhhhhhhccccccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhh
Confidence 222222211100 0 0 0000000100 1111222212222222333566777888888999999876 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+ +.+.|| .+-||..++.+.-. +|+.+- ....=||+|.||+.+-
T Consensus 229 vq~ad--vyMFDEpSsYLDVKQRLkaA~--------~IRsl~--~p~~YiIVVEHDLsVL 276 (592)
T KOG0063|consen 229 VQKAD--VYMFDEPSSYLDVKQRLKAAI--------TIRSLI--NPDRYIIVVEHDLSVL 276 (592)
T ss_pred hhhcc--eeEecCCcccchHHHhhhHHH--------HHHHhh--CCCCeEEEEEeechHH
Confidence 99999 999999 88899998877665 677765 3456799999999874
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=1.2e-07 Score=84.42 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEe-eccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHH
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMA-AGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAV 246 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~-~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 246 (372)
.-|+.|+|.||+|||||+-.||....- .||.=-+. ..|....+-.+..+. ..+...+. -.... +...+...
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~-~~~~k~~~-g~FlR----AEs~yn~a 110 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKL-HKRKKPPI-GFFLR----AESFYNVA 110 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHH-hhcCCCCc-ceEEe----hhHHHHHH
Confidence 349999999999999999999876652 33321110 111111111111111 11112211 00000 11111111
Q ss_pred HhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhH
Q 017380 247 KRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLI 322 (372)
Q Consensus 247 ~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgii 322 (372)
. .+| |..|-..+-.+-..+.|.|+- .+.+.+. ..- +.+||| -++|.+..|.+++. +
T Consensus 111 s-----~~D----e~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~-~~G--iYiLDEPEa~LSp~RQlella--------~ 170 (233)
T COG3910 111 S-----YLD----EADGEANYGGRSLHHMSHGESFLAIFHNRFN-GQG--IYILDEPEAALSPSRQLELLA--------I 170 (233)
T ss_pred H-----HHH----hhhhhcccCCcchhhhccchHHHHHHHHHhc-cCc--eEEecCccccCCHHHHHHHHH--------H
Confidence 1 111 111111233444567788887 4444443 334 899999 99999999998888 8
Q ss_pred hhhccccccceeeEeeeecc
Q 017380 323 LTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 323 ltkld~t~~gg~vi~isH~~ 342 (372)
+..++ +.|.-+|++||..
T Consensus 171 l~~la--~sGaQ~IiATHSP 188 (233)
T COG3910 171 LRDLA--DSGAQIIIATHSP 188 (233)
T ss_pred HHHHH--hcCCeEEEEecCh
Confidence 99998 6688999999974
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.73 E-value=1.1e-08 Score=83.69 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=40.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.++++++|++++|++++|+||||||||||++.+. +|+|.+.+.|.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 3578899999999999999999999999999986 77899987765
No 451
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=2.2e-08 Score=92.46 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=80.8
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA 236 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~ 236 (372)
.+.++++|+.++|++++|.||||+||||+++.+++..-. +-|-- + ..+..+....+ .+ +....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v-pa~~~~i~~~~---------~i---~~~~~-- 81 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V-PAKSMRLSLVD---------RI---FTRIG-- 81 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c-CccccEecccc---------EE---EEecC--
Confidence 456789999988999999999999999999999987543 22211 1 11111110000 00 00000
Q ss_pred cHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhh
Q 017380 237 KASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDV 315 (372)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~ 315 (372)
..|. + ..|.+.+. .-+.+++...+ . +.+|. ++++|| ..|.|+.....+...
T Consensus 82 ----------------~~d~-~--~~~~StF~-~e~~~~~~il~---~--~~~~s--LvLlDE~~~Gt~~~dg~~la~a- 133 (218)
T cd03286 82 ----------------ARDD-I--MKGESTFM-VELSETANILR---H--ATPDS--LVILDELGRGTSTHDGYAIAHA- 133 (218)
T ss_pred ----------------cccc-c--ccCcchHH-HHHHHHHHHHH---h--CCCCe--EEEEecccCCCCchHHHHHHHH-
Confidence 0000 0 01221111 11223332222 1 25677 999999 999999888777764
Q ss_pred cCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 316 VGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 316 ~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+.. ..+..+|++||++++.
T Consensus 134 ------il~~L~~-~~~~~~i~~TH~~el~ 156 (218)
T cd03286 134 ------VLEYLVK-KVKCLTLFSTHYHSLC 156 (218)
T ss_pred ------HHHHHHH-hcCCcEEEEeccHHHH
Confidence 6777763 2378999999998875
No 452
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.72 E-value=5.1e-08 Score=89.29 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHHhCCCCceEEEEcC-C-----CCCCHHHHHHHHhhhcCchhhHhhhcc
Q 017380 281 AVGKVVNGAPNEILLVLDG-T-----TGLNMLPQAREFNDVVGITGLILTKLD 327 (372)
Q Consensus 281 ~iAral~~~P~~~lLvLDE-t-----sglD~~~~~~~~~~~~~~tgiiltkld 327 (372)
.||++++.+|+ ++++|| | +++|+..+..+.+ ++.++.
T Consensus 162 ~ia~~l~~~p~--~~~ldEp~~~~~~~~ld~~~~~~~~~--------~~~~~~ 204 (215)
T PTZ00132 162 WLARRLTNDPN--LVFVGAPALAPEEIQIDPELVAQAEK--------ELQAAA 204 (215)
T ss_pred HHHHHHhhccc--ceecCCcccCCCccccCHHHHHHHHH--------HHHHHh
Confidence 89999999999 999999 9 9999999988877 666664
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.70 E-value=1.6e-07 Score=87.51 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=30.6
Q ss_pred ccCCeEEEEEcCCCCcHHHH-HHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTS-LGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTl-l~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+++|++++|+|+||+||||+ ++.+++.+++. .++.+...+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~ 62 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL 62 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC
Confidence 57899999999999999999 57777776654 3444444443
No 454
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2.6e-07 Score=88.01 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=35.2
Q ss_pred hhHhHHHHHHH---HHHHHHh---------CCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 270 SLMEELVACKK---AVGKVVN---------GAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 270 ~~~~eLS~G~r---~iAral~---------~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
.....+|.|++ .+|++++ .+|+ ++++|| ++++|+..+..++.
T Consensus 179 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~--illlDEp~a~LD~~~~~~l~~ 233 (270)
T cd03242 179 PAADFGSQGQQRTLALALKLAEIQLIKEVSGEYP--VLLLDDVLAELDLGRQAALLD 233 (270)
T ss_pred eHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCc--EEEEcCcchhcCHHHHHHHHH
Confidence 34566899999 7777764 7899 999999 99999999977776
No 455
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.67 E-value=4.1e-08 Score=96.73 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=87.8
Q ss_pred ccceeccCC-----eEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEEeeccc-------cchhhhhHHHHHHHhhCcce
Q 017380 162 ELQLGYRKP-----AVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILMAAGDT-------FRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 162 ~isl~i~~g-----~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l~~~d~-------~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.+..| +++..+|.||.||||+++++||.++|+.| +|-...... -+.+++.|+
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~l----------- 422 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQL----------- 422 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHH-----------
Confidence 455555544 68999999999999999999999999754 433221110 011111111
Q ss_pred eEeccccccHHHHHHHHHHhh-hhhc-hHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-KEQG-FDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTG 302 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsg 302 (372)
+.+.+..+ .... +..++ .-+.+.+..++-+..||||+. +++.++-...+ +.+.|| .+-
T Consensus 423 -------------l~~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAd--vYliDEpsAy 486 (592)
T KOG0063|consen 423 -------------LHTKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPAD--VYLIDEPSAY 486 (592)
T ss_pred -------------HHHHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc--eEEecCchhh
Confidence 01111000 0000 11111 222344556778889999998 66666656667 999999 999
Q ss_pred CCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 303 LNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 303 lD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|..++...-. ++..+-- ....+..+|.||+-..
T Consensus 487 lDSeQRi~Ask--------vikRfil-hakktafvVEhdfIma 520 (592)
T KOG0063|consen 487 LDSEQRIIASK--------VIKRFIL-HAKKTAFVVEHDFIMA 520 (592)
T ss_pred cChHHHHHHHH--------HHHHHHH-hccchhhhhhhHHHHH
Confidence 99888754443 4443321 3357889999986443
No 456
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.65 E-value=7.1e-08 Score=88.62 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHHHH-HHHHH----H--hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 274 ELVACKK-AVGKV----V--NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 274 eLS~G~r-~iAra----l--~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.||+||+ .++-| + ....+ +++||| .++||...+..+.. +|..+. +..-+|++||+-.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p--~~ilDEvd~~LD~~~~~~l~~--------~l~~~~---~~~Q~ii~Th~~~~~ 202 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSP--FLILDEVDAALDEQNRKRLAD--------LLKELS---KQSQFIITTHNPEMF 202 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--S--EEEEESTTTTS-HHHHHHHHH--------HHHHHT---TTSEEEEE-S-HHHH
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccc--------cccccc---ccccccccccccccc
Confidence 8999999 22222 2 23445 999999 99999999988877 777664 356799999986653
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.64 E-value=2.2e-08 Score=100.95 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEEeeccccc
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILMAAGDTFR 210 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l~~~d~~r 210 (372)
+++++++++.+|++++|+|||||||||+++ +|+..|+.| +|.+.|.+.+.
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 356899999999999999999999999999 777777655 89998887764
No 458
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.61 E-value=8.1e-08 Score=92.91 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=65.5
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh---hh--hH--HHHHHHhhCcceeEeccc
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA---AS--DQ--LEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~---a~--eq--l~~~~~~~~v~~~~~~~~ 234 (372)
++++...++.+++|+|++|+||||++..+++.+...+.+|.+.+.|..... +. ++ +.......++.+......
T Consensus 26 ~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (300)
T TIGR00750 26 RIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTR 105 (300)
T ss_pred hCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcc
Confidence 345566789999999999999999999999999888889999888864421 11 11 111111112211001100
Q ss_pred c--ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccc
Q 017380 235 K--AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTN 268 (372)
Q Consensus 235 ~--~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~ 268 (372)
+ ........+.+......++|.+++||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e 141 (300)
T TIGR00750 106 GHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSE 141 (300)
T ss_pred ccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh
Confidence 0 011122334444445568999999999986543
No 459
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.47 E-value=1.8e-07 Score=102.63 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 259 CDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 259 ~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
++.+|+.+. .++.+.+||+||+ .||++|..+|...++|||| |+|||+..+.+++. +|.++. ++|.
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~--------~L~~L~--~~G~ 542 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE--------TLKHLR--DLGN 542 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH--------HHHHHH--hCCC
Confidence 467798766 6899999999999 9999999987223999999 99999999988888 999986 5689
Q ss_pred eeEeeeeccCCc-----eeee
Q 017380 334 CVVSVVDELGIP-----VKFV 349 (372)
Q Consensus 334 ~vi~isH~~~~p-----i~~i 349 (372)
|||+|+|+++.. +.++
T Consensus 543 TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 543 TLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred EEEEEeCCHHHHHhCCEEEEe
Confidence 999999998864 5566
No 460
>PRK13695 putative NTPase; Provisional
Probab=98.46 E-value=8.1e-07 Score=78.81 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
.++|+|+||+||||+++.+++.+.+. | +.+.+.-. +.+.......+... .....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G-~~~~g~~~------~~~~~~~~~~~~~~-~~~~~----------------- 55 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-G-YKVGGFYT------EEVREGGKRIGFKI-IDLDT----------------- 55 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-CeEEEEEc------HHHHhcCCccceEE-EEcCC-----------------
Confidence 47999999999999999999988763 3 22211111 11111111222211 10000
Q ss_pred hchHHHHHHhhCC-C-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhc
Q 017380 252 QGFDIVLCDTSGR-L-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKL 326 (372)
Q Consensus 252 ~~~d~vl~dt~G~-~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkl 326 (372)
.....+ ...+. . ....+....+|++++ .+.+....+|+ ++++||...++.... .... .+.++
T Consensus 56 -~~~~~l-~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~--~lllDE~~~~e~~~~-~~~~--------~l~~~ 122 (174)
T PRK13695 56 -GEEGIL-ARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEAD--VIIIDEIGKMELKSP-KFVK--------AVEEV 122 (174)
T ss_pred -CCeEEc-cccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCC--EEEEECCCcchhhhH-HHHH--------HHHHH
Confidence 000001 11111 1 111234446888887 44444556899 999999433433332 2223 44444
Q ss_pred cccccceeeEeeeeccCC
Q 017380 327 DGSARGGCVVSVVDELGI 344 (372)
Q Consensus 327 d~t~~gg~vi~isH~~~~ 344 (372)
- ..+.++|.++|+...
T Consensus 123 ~--~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 123 L--DSEKPVIATLHRRSV 138 (174)
T ss_pred H--hCCCeEEEEECchhh
Confidence 3 357899999998543
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.43 E-value=1.6e-06 Score=80.60 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=34.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+++|.++.|.|++|+||||+...++.-....++++.+.+.+-
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 468999999999999999999998654434677888877653
No 462
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.43 E-value=4.5e-07 Score=91.50 Aligned_cols=108 Identities=19% Similarity=0.351 Sum_probs=77.3
Q ss_pred cHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHHHHhccCCCCCccc----eec-cC
Q 017380 99 TDKVLDE--LEEALLVSDFGPRITIKIVESLRDDIL--AGKLKSGPDIKDALKNSVLDLLTKKGNKTELQ----LGY-RK 169 (372)
Q Consensus 99 ~~~~~~~--l~~~L~~~dv~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~is----l~i-~~ 169 (372)
.+..|.. +.+.|+++||+++++.+|++.+++.+. +......++++..+.+.+...++.... ...+ +.- .+
T Consensus 176 ~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~~a-~~y~la~~i~~~k~ 254 (475)
T PRK12337 176 PRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEEVA-RRYRLLRSIRRPPR 254 (475)
T ss_pred CCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhccCC
Confidence 3456777 999999999999999999999998873 334445677777777777665542111 1111 111 35
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
+.++.+.|+||+||||+..+||..+.. ..+...|++|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR~ 292 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVRE 292 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHHH
Confidence 789999999999999999999988743 22447777553
No 463
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=3e-07 Score=100.65 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=67.4
Q ss_pred HhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 260 DTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 260 dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
+.+|+.+. .++.+.+||+||+ .||++|+.+|...++|||| |+|||+....+++. +|.++. ++|.+
T Consensus 472 ~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~--------~L~~L~--~~G~T 541 (924)
T TIGR00630 472 IDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN--------TLKRLR--DLGNT 541 (924)
T ss_pred hhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH--------HHHHHH--hCCCE
Confidence 45688665 5889999999999 9999999987333999999 99999999988888 899986 56899
Q ss_pred eEeeeeccCCc-----eeee
Q 017380 335 VVSVVDELGIP-----VKFV 349 (372)
Q Consensus 335 vi~isH~~~~p-----i~~i 349 (372)
||+|+|+++.. +.++
T Consensus 542 VIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 542 VIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred EEEEECCHHHHhhCCEEEEe
Confidence 99999998853 4566
No 464
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=9.9e-07 Score=83.07 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=30.0
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
+.+.+|+.++|+||+|+||||++++|++.+...
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 467899999999999999999999999988765
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.38 E-value=4.2e-06 Score=84.86 Aligned_cols=49 Identities=24% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.+++.+ +.+.+|++++|+|+||+|||||++.|++...++.+.+...+..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 456667 8999999999999999999999999999998877666665543
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.37 E-value=2.7e-07 Score=82.99 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=35.9
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~ 205 (372)
+.+++|+.++|+|||||||||+++.|+++++++.|.|.+.+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 34567999999999999999999999999999888888743
No 467
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.37 E-value=1.9e-06 Score=78.27 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=44.6
Q ss_pred hHhHHHHHHH---HHHHHHhCCCCc-eEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 271 LMEELVACKK---AVGKVVNGAPNE-ILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 271 ~~~eLS~G~r---~iAral~~~P~~-~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
.+.++|.|++ .+...+...+.. .++++|| -++|+|..|..++. ++.++. ..+.-+|++||...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~--------~l~~~~--~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE--------LLKELS--KKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH--------HHHHTG--GGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH--------HHHhhC--ccCCEEEEeCccchh
Confidence 4556799999 344455555533 5999999 99999999988886 776664 247889999998643
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.33 E-value=8.2e-06 Score=67.23 Aligned_cols=39 Identities=38% Similarity=0.545 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+..++|+||+|+||||++..|+..+......+.+...+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 678999999999999999999999886653454444443
No 469
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.31 E-value=5.5e-07 Score=84.27 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh--hhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR--LKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG 249 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~--l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
.+++||++|+||||+++.|+|. ++...|.+.- ..++....++.+.|+.....+. ....+. ..+.+.+..+
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~---~p~~i~l~~~~~~~~~~~~~~~----~~~~~~-~~v~~~i~~~ 99 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR---RPLILQLINSSTEYAEFLHCKG----KKFTDF-DEVRNEIEAE 99 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc---cceEEEccCCCCcceEEEecCC----cccCCH-HHHHHHHHHH
Confidence 5899999999999999999998 4445555432 2222222222223333322221 000111 1122222111
Q ss_pred h---------------------hhchHHHHHHhhCCCccch-hhHhHHHHHHHHHHHHHhCCCC-ceEEEEcCCCCC---
Q 017380 250 K---------------------EQGFDIVLCDTSGRLHTNY-SLMEELVACKKAVGKVVNGAPN-EILLVLDGTTGL--- 303 (372)
Q Consensus 250 ~---------------------~~~~d~vl~dt~G~~~~~~-~~~~eLS~G~r~iAral~~~P~-~~lLvLDEtsgl--- 303 (372)
. ....+..++|+.|+..... .....+..-.+.+....+.+|. -+++|+|.+.++
T Consensus 100 ~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~ 179 (240)
T smart00053 100 TDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANS 179 (240)
T ss_pred HHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCch
Confidence 0 1124556789999964321 1123344444455555566555 456667875554
Q ss_pred CHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
|....++.+...-.-+-+++||.|...+|..
T Consensus 180 d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~ 210 (240)
T smart00053 180 DALKLAKEVDPQGERTIGVITKLDLMDEGTD 210 (240)
T ss_pred hHHHHHHHHHHcCCcEEEEEECCCCCCccHH
Confidence 3333344443222344447788886555544
No 470
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.25 E-value=1.1e-06 Score=84.41 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=38.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeeccccch
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAGDTFRA 211 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~d~~r~ 211 (372)
+.+.++||.|||||||||++++|.+++. +.+|+|.+.+.|.|-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 3568999999999999999999999998 6688998888886543
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.25 E-value=1.8e-06 Score=80.16 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=36.6
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE-eeccccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM-AAGDTFR 210 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l-~~~d~~r 210 (372)
.++.+++|.|||||||||+++.|++.+++++|.+.+ ...|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 467899999999999999999999999999998665 5565443
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.23 E-value=6.5e-06 Score=74.81 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEee
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAA 205 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~ 205 (372)
+++|+||+||||||+++.|++.+.+ .+|.|....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 7899999999999999999998875 456766633
No 473
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.21 E-value=2.8e-06 Score=64.88 Aligned_cols=74 Identities=31% Similarity=0.475 Sum_probs=54.7
Q ss_pred HHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHH
Q 017380 73 IFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRD-DILAGKLKSGPDIKDALKNSV 150 (372)
Q Consensus 73 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~l 150 (372)
|+++|+++++++..- .+ ....++++++++|++.|+++||+++++.+|++.+++ .+......+.+.+..++++.|
T Consensus 1 L~~~l~kt~~~l~~~--~~--~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGS--IF--LTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIKKKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCC--SS--CTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCc--cc--ccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHC
Confidence 567888888887631 11 122345899999999999999999999999999999 555455555566766666543
No 474
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.20 E-value=1e-06 Score=76.42 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
+++++|++|+||||++..++..+.+.+++|.+...|..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 37899999999999999999999999999999888853
No 475
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=2.5e-05 Score=65.02 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
.+..+.|+||+|+||||+++.++..+...+..|.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 46689999999999999999999988755556655443
No 476
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=2.1e-06 Score=78.39 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=33.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
++|.+++|+|||||||||+++.|++++.+ +.+.+...|.|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 57999999999999999999999999876 44555566654
No 477
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.13 E-value=4.2e-06 Score=81.87 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch---hhh----hHHHHHHHhhCcceeEecccc----cc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA---AAS----DQLEIWAERTGCEIVVAEGEK----AK 237 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~---~a~----eql~~~~~~~~v~~~~~~~~~----~~ 237 (372)
+.-+++|.|++||||||++..|...+...+.+|.+.+.|.... ++. .....++...++. +..... ..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~--~r~~~~~~~l~~ 132 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAF--IRPSPSSGTLGG 132 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeE--EEecCCcccccc
Confidence 4579999999999999999999999998888999998886432 221 1111111111211 211111 11
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHH-HHhhhc
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAR-EFNDVV 316 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~-~~~~~~ 316 (372)
......+.+......++|.+++||+|+.+.... + +...+-++++++--+|-|...... ++. ..
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-i--------------~~~aD~vlvv~~p~~gd~iq~~k~gi~E-~a 196 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA-V--------------AGMVDFFLLLQLPGAGDELQGIKKGIME-LA 196 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH-H--------------HHhCCEEEEEecCCchHHHHHHHhhhhh-hh
Confidence 234445566555667899999999998744322 1 112343345554355555433222 222 12
Q ss_pred CchhhHhhhccc
Q 017380 317 GITGLILTKLDG 328 (372)
Q Consensus 317 ~~tgiiltkld~ 328 (372)
+-++++|.|.
T Consensus 197 --DIiVVNKaDl 206 (332)
T PRK09435 197 --DLIVINKADG 206 (332)
T ss_pred --heEEeehhcc
Confidence 3468888884
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.13 E-value=4.5e-05 Score=70.44 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=30.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|++++|.|++|+||||+...++......+..+.+...+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56899999999999999999987764322234456555554
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.10 E-value=8.3e-05 Score=84.34 Aligned_cols=41 Identities=29% Similarity=0.273 Sum_probs=33.7
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEee
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAA 205 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~ 205 (372)
+..+++++++|+|++|+||||+++.+++.+.. ..|.+.+.+
T Consensus 202 l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 202 LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 34557899999999999999999999887764 477887743
No 480
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.10 E-value=1.2e-05 Score=77.31 Aligned_cols=100 Identities=20% Similarity=0.340 Sum_probs=72.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHHHHhccCCCCCccce-----eccCCeEEEEEcC
Q 017380 106 LEEALLVSDFGPRITIKIVESLRDDILAGK--LKSGPDIKDALKNSVLDLLTKKGNKTELQL-----GYRKPAVVLIVGV 178 (372)
Q Consensus 106 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~isl-----~i~~g~vi~lvGp 178 (372)
|.+.|..+|+.++.|.++...+.+.+..+. ..+.+++.+.+.+.|.+.+..... ....+ .-+.+-+++|.|+
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~-~~y~~~~~i~~~~~p~iIlI~G~ 100 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVA-EKYLLWRRIRKSKEPIIILIGGA 100 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHH-HHHHHHHHHhcCCCCEEEEEECC
Confidence 457799999999999999999988887643 345677778888777776654321 11221 1134678999999
Q ss_pred CCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 179 NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 179 NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
+||||||+...||..+ +... +.+.|++|
T Consensus 101 sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 101 SGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 9999999999999887 3343 44788876
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=8.7e-06 Score=82.15 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 149 SVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 149 ~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.+.+.|.. ..+++. .+.+.+|+.++|+|+||+||||+++.|++..+++.|.|.+.+...
T Consensus 135 ~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg 194 (432)
T PRK06793 135 EITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG 194 (432)
T ss_pred chhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence 44455542 234444 489999999999999999999999999999999888777765543
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.09 E-value=2.8e-05 Score=72.54 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh------------hhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR------------LKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~------------l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
|.+.+|+||.|+||||+.-.+|-- ..+.+|+|.+.+.+.......+++..+....+... ........
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~-~~~rl~~~ 79 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDD-AGDRLFID 79 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcC-cccceEEe
Confidence 678899999999999999998752 23356788777765433333334444444332110 00000000
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCC------CCCHHHHHHH
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTT------GLNMLPQARE 311 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEts------glD~~~~~~~ 311 (372)
........ + ...++ .....++....+ .+...+|+ ++|+|..+ ..|......+
T Consensus 80 ----------~g~~~~l~--~-~~~~~----~~~~~~~~~l~~---~~~~~~~~--lvviDpl~~~~~~~~~d~~~~~~~ 137 (239)
T cd01125 80 ----------SGRIQPIS--I-AREGR----IIVVPEFERIIE---QLLIRRID--LVVIDPLVSFHGVSENDNGAMDAV 137 (239)
T ss_pred ----------ccCCCcee--c-ccCCc----ccccHHHHHHHH---HHHhcCCC--EEEECChHHhCCCCcCCHHHHHHH
Confidence 00000000 0 00000 001112222222 12346899 99999832 3577666566
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+. .+.++.. ..|.++|+++|..+-.
T Consensus 138 ~~--------~L~~~a~-~~g~avl~v~H~~K~~ 162 (239)
T cd01125 138 IK--------ALRRIAA-QTGAAILLVHHVRKGS 162 (239)
T ss_pred HH--------HHHHHHH-HhCCEEEEEeccCccc
Confidence 65 5666643 4588999999987543
No 483
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.08 E-value=3.2e-06 Score=78.15 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d~~r 210 (372)
+++|.|||||||||+++.|++.+.+ .+++|.+...|.|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5899999999999999999999985 56788887777653
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.03 E-value=1e-05 Score=83.35 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=78.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhh-hhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHH
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYR-LKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQA 245 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~-l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 245 (372)
+.+|.++.|.|++|+||||+....+.. ....+-++.+.+.+- ..+++...+..+|..+.-....+... ..+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~---~~~~ 90 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLF---ILDA 90 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceE---EEec
Confidence 468999999999999999999887432 232133444445442 23456666666665331000000000 0000
Q ss_pred HHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-C---CCCCH--HHHHHHHhhhcCch
Q 017380 246 VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-T---TGLNM--LPQAREFNDVVGIT 319 (372)
Q Consensus 246 ~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-t---sglD~--~~~~~~~~~~~~~t 319 (372)
. ....+..+.+..++.+..++.+.++|++ +|+ .+++|- + ...|. ..+..++.
T Consensus 91 ~----~~~~~~~~~~~~~l~~~l~~i~~~ls~g----------~~q--RVvIDSl~aL~~~~~~~~~~r~~l~~------ 148 (484)
T TIGR02655 91 S----PDPEGQDVVGGFDLSALIERINYAIRKY----------KAK--RVSIDSVTAVFQQYDAVSVVRREIFR------ 148 (484)
T ss_pred C----chhccccccccCCHHHHHHHHHHHHHHh----------CCc--EEEEeehhHhhhhcCchHHHHHHHHH------
Confidence 0 0000001122334445556677778877 567 788884 2 23343 23334444
Q ss_pred hhHhhhccccccceeeEeeeeccCC
Q 017380 320 GLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 320 giiltkld~t~~gg~vi~isH~~~~ 344 (372)
++..+. ..|.|+|+++|+.+.
T Consensus 149 --Li~~L~--~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 149 --LVARLK--QIGVTTVMTTERIEE 169 (484)
T ss_pred --HHHHHH--HCCCEEEEEecCccc
Confidence 666675 568999999998764
No 485
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.02 E-value=7.2e-06 Score=72.64 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=37.9
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++|++++|+|++||||||+.+.|++.+.+.++++.+.+.|..|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4789999999999999999999999998888888877777644
No 486
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.99 E-value=1.6e-05 Score=73.48 Aligned_cols=114 Identities=27% Similarity=0.379 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc----ceeEeccccccHHHHHHHHHHhhhhhc
Q 017380 178 VNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC----EIVVAEGEKAKASSVLSQAVKRGKEQG 253 (372)
Q Consensus 178 pNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (372)
--|+||||++..||+.+..+|++|.+++.|..+. +..|.++.+- +. ............+.+.+..+....
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p-----l~~W~~~a~~~~~~~~-~~~V~~~~e~~~l~~~~e~a~~~~ 83 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQP-----LAKWAENAQRPGAWPD-RIEVYEADELTILEDAYEAAEASG 83 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc-----HHHHHHhccccCCCCC-CeeEEeccchhhHHHHHHHHHhcC
Confidence 3499999999999999999999999999998664 4566554321 11 000011122234445555444456
Q ss_pred hHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 254 ~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
+|.+++|+.|-......+ +| ...+ ++|+.- -+.+|.....+.++
T Consensus 84 ~d~VlvDleG~as~~~~~---------ai-----a~sD--lVlIP~~~s~lD~~eA~~t~~ 128 (231)
T PF07015_consen 84 FDFVLVDLEGGASELNDY---------AI-----ARSD--LVLIPMQPSQLDADEAAKTFK 128 (231)
T ss_pred CCEEEEeCCCCCchhHHH---------HH-----HHCC--EEEECCCCChHHHHHHHHHHH
Confidence 788899998865543322 12 2567 888888 88899888877777
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.96 E-value=2.7e-05 Score=72.73 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=35.0
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
..++++|| ..|-++.....+... ++..+.+ ..+..+|++||..++.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~a-------ile~l~~-~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIA-------ILEYLLE-KSGCFVIIATHFHELA 169 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHH-------HHHHHHH-TTT-EEEEEES-GGGG
T ss_pred ceeeecccccCCCChhHHHHHHHH-------HHHHHHH-hccccEEEEeccchhH
Confidence 45999999 999999888777665 7777763 2467899999999874
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.96 E-value=7.4e-06 Score=74.05 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
+++|+||+||||||+.+.|++++ .++++.+.+.|.|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58999999999999999999998 45677777777643
No 489
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.96 E-value=1.1e-05 Score=71.98 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+|++++|+|+|||||||+++.|++++.+ +.+.+.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 5899999999999999999999999876 45544443
No 490
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.93 E-value=6.8e-05 Score=73.97 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=30.5
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEe
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMA 204 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~ 204 (372)
.++.++.|.||+|||||||++.|.+.+.+ .+++|...
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 35679999999999999999999997764 46677664
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.91 E-value=1.4e-05 Score=58.82 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=28.1
Q ss_pred ceeccC-CeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 017380 164 QLGYRK-PAVVLIVGVNGGGKTTSLGKLAYRLKNEG 198 (372)
Q Consensus 164 sl~i~~-g~vi~lvGpNGsGKTTll~~Lag~l~~~~ 198 (372)
.+++.+ |.++.|.|||||||||++..|.-.+-+..
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 445543 56999999999999999999988776543
No 492
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.91 E-value=1.9e-05 Score=75.72 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc---ccHHHHHHHH
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK---AKASSVLSQA 245 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~---~~~~~~~~~~ 245 (372)
.+.++.|+|++|||||||+..+.+.++...+ +.+...|.......+.+ ...+++. +....+ ......+.++
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~-~~VI~gD~~t~~Da~rI----~~~g~pv-vqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVP-CAVIEGDQQTVNDAARI----RATGTPA-IQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCC-EEEECCCcCcHHHHHHH----HhcCCcE-EEecCCCCCcCcHHHHHHH
Confidence 5789999999999999999999999877654 44445554333222222 2345665 332221 1112333445
Q ss_pred HHhhhhhchHHHHHHhhCC
Q 017380 246 VKRGKEQGFDIVLCDTSGR 264 (372)
Q Consensus 246 ~~~~~~~~~d~vl~dt~G~ 264 (372)
+........+.+++++.|.
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5544455667778888884
No 493
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.90 E-value=1.5e-05 Score=72.67 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=33.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
.++.+++|.|++||||||+.+.|++.+ .++.|.+...|.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 368899999999999999999999998 3457777777765
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.90 E-value=1e-05 Score=72.64 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
|++++|+|||||||||+++.|++.+.+ .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEEC
Confidence 689999999999999999999998764 355433333
No 495
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=9.9e-06 Score=81.78 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG 198 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~ 198 (372)
..+++++ +++.+|++++|+|+||+||||++++|++++.++.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 4568889 9999999999999999999999999999988764
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.86 E-value=1.2e-05 Score=72.96 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=26.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
++|++++|+||+||||||+++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4799999999999999999999999875
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.84 E-value=1.1e-05 Score=78.26 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=35.2
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
++.+..|+.++|+|||||||||+++.|++.++++.+.|.+
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 4556789999999999999999999999999888776666
No 498
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.84 E-value=4e-05 Score=74.82 Aligned_cols=49 Identities=24% Similarity=0.181 Sum_probs=42.6
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.+++++ +.+.+|++++|+|+||+||||+++.|++...++.|.+.+.+.+
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 456777 9999999999999999999999999999999887777766644
No 499
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.84 E-value=5e-05 Score=80.47 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCC--------eEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHH
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGA--------KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSV 241 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G--------~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~ 241 (372)
+..++|+||||+||||+++.+.+..++..| -|.+.+.+. +....+ +. ...++. . ..+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~~d~~~-i~--~~llg~------~--~~~--- 239 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-RWDPRE-VT--NPLLGS------V--HDP--- 239 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-cCCHHH-Hh--HHhcCC------c--cHH---
Confidence 457999999999999999999998875433 355543322 110000 00 000110 0 000
Q ss_pred HHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHh
Q 017380 242 LSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFN 313 (372)
Q Consensus 242 ~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~ 313 (372)
.+. .....+ ...|+.......+.++|+| +|+|||+..+|...|..++.
T Consensus 240 ~~~--------~a~~~l-~~~gl~~~~~g~v~~asgG---------------vL~LDEi~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 240 IYQ--------GARRDL-AETGVPEPKTGLVTDAHGG---------------VLFIDEIGELDPLLQNKLLK 287 (615)
T ss_pred HHH--------HHHHHH-HHcCCCchhcCchhhcCCC---------------eEEEeccccCCHHHHHHHHH
Confidence 000 011112 3446665556666666655 89999999999998877665
No 500
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.84 E-value=5.9e-06 Score=85.05 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++.+.++...+.+++++.+..|+.++|+||||+||||+++.|.|+++|..|++.+.....+.
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 55566665556677889999999999999999999999999999999999999997666544
Done!