Query 017380
Match_columns 372
No_of_seqs 569 out of 3136
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2og2_A Putative signal recogni 100.0 1.3E-50 4.3E-55 397.5 21.5 322 50-372 37-359 (359)
2 3b9q_A Chloroplast SRP recepto 100.0 1.9E-49 6.6E-54 381.4 20.5 300 72-372 2-302 (302)
3 2yhs_A FTSY, cell division pro 100.0 3.5E-47 1.2E-51 384.1 18.9 301 66-372 192-494 (503)
4 1rj9_A FTSY, signal recognitio 100.0 8E-46 2.7E-50 356.5 13.9 292 68-372 2-303 (304)
5 3e70_C DPA, signal recognition 100.0 2.3E-44 7.9E-49 349.6 17.8 295 68-372 6-324 (328)
6 1vma_A Cell division protein F 100.0 1.8E-43 6.2E-48 340.2 18.6 290 69-372 15-305 (306)
7 1zu4_A FTSY; GTPase, signal re 100.0 1.3E-40 4.4E-45 322.4 18.3 296 73-372 7-310 (320)
8 3dm5_A SRP54, signal recogniti 100.0 1.8E-37 6E-42 310.7 16.5 266 97-372 26-295 (443)
9 2ffh_A Protein (FFH); SRP54, s 100.0 4.9E-37 1.7E-41 306.9 16.2 287 71-372 3-293 (425)
10 3kl4_A SRP54, signal recogniti 100.0 8.6E-37 3E-41 305.6 15.0 267 97-372 22-294 (433)
11 1j8m_F SRP54, signal recogniti 100.0 3.4E-36 1.2E-40 288.5 16.9 265 98-372 24-295 (297)
12 1ls1_A Signal recognition part 100.0 2.5E-35 8.5E-40 282.3 16.0 288 70-372 2-293 (295)
13 2xxa_A Signal recognition part 100.0 3.3E-32 1.1E-36 273.3 15.0 266 98-372 26-296 (433)
14 2px0_A Flagellar biosynthesis 100.0 5.4E-32 1.8E-36 259.3 11.6 256 98-372 37-296 (296)
15 2pcj_A ABC transporter, lipopr 100.0 4.1E-31 1.4E-35 243.4 5.0 190 149-355 9-218 (224)
16 3tif_A Uncharacterized ABC tra 100.0 2.7E-30 9.3E-35 239.6 10.1 192 150-356 7-225 (235)
17 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-30 5.7E-35 246.4 6.5 192 149-357 12-225 (275)
18 2olj_A Amino acid ABC transpor 100.0 1E-30 3.4E-35 246.4 4.2 191 148-356 28-239 (263)
19 1b0u_A Histidine permease; ABC 100.0 1.3E-30 4.3E-35 245.6 4.6 192 149-356 11-233 (262)
20 2v3c_C SRP54, signal recogniti 100.0 3.9E-30 1.3E-34 258.1 8.0 266 96-372 23-294 (432)
21 3tui_C Methionine import ATP-b 100.0 5.9E-30 2E-34 250.7 9.0 194 148-357 28-245 (366)
22 2j37_W Signal recognition part 100.0 6.1E-29 2.1E-33 253.3 15.3 266 98-372 27-296 (504)
23 1g6h_A High-affinity branched- 100.0 5.9E-30 2E-34 240.3 7.1 189 149-356 12-233 (257)
24 4g1u_C Hemin import ATP-bindin 100.0 1.2E-30 3.9E-35 246.4 1.2 189 149-356 16-228 (266)
25 3rlf_A Maltose/maltodextrin im 100.0 1.5E-30 5E-35 256.4 1.9 187 149-356 8-214 (381)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 5.5E-30 1.9E-34 250.6 5.0 191 149-356 9-219 (359)
27 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-30 2.3E-34 239.8 5.2 186 149-355 20-225 (256)
28 1z47_A CYSA, putative ABC-tran 100.0 3.1E-29 1.1E-33 245.2 6.3 186 149-355 19-225 (355)
29 3d31_A Sulfate/molybdate ABC t 100.0 2.7E-29 9.1E-34 245.3 5.1 185 149-355 6-207 (348)
30 2yyz_A Sugar ABC transporter, 99.9 2.9E-29 9.8E-34 245.9 4.4 186 149-355 8-213 (359)
31 1ji0_A ABC transporter; ATP bi 99.9 2E-29 6.8E-34 234.4 3.1 188 149-355 11-218 (240)
32 2it1_A 362AA long hypothetical 99.9 2.9E-29 1E-33 246.1 3.9 186 149-355 8-213 (362)
33 2ihy_A ABC transporter, ATP-bi 99.9 4.6E-29 1.6E-33 237.0 4.1 188 148-355 25-242 (279)
34 2yz2_A Putative ABC transporte 99.9 9.4E-29 3.2E-33 233.3 5.9 175 158-355 21-217 (266)
35 1oxx_K GLCV, glucose, ABC tran 99.9 5.2E-29 1.8E-33 243.8 3.0 191 149-355 8-220 (353)
36 1sgw_A Putative ABC transporte 99.9 6.1E-29 2.1E-33 227.4 3.0 172 149-347 15-198 (214)
37 1g29_1 MALK, maltose transport 99.9 9.4E-29 3.2E-33 243.5 4.6 192 149-355 8-219 (372)
38 2ixe_A Antigen peptide transpo 99.9 1.4E-28 4.9E-33 232.7 5.2 189 148-356 20-236 (271)
39 2d2e_A SUFC protein; ABC-ATPas 99.9 1.5E-28 5E-33 229.9 4.8 189 149-356 8-224 (250)
40 1v43_A Sugar-binding transport 99.9 4.6E-29 1.6E-33 245.6 1.4 186 149-355 16-221 (372)
41 2ff7_A Alpha-hemolysin translo 99.9 2.6E-28 9E-33 227.8 4.7 186 149-356 12-223 (247)
42 2onk_A Molybdate/tungstate ABC 99.9 7.1E-28 2.4E-32 224.0 7.6 182 150-355 7-206 (240)
43 2nq2_C Hypothetical ABC transp 99.9 3E-28 1E-32 228.2 4.4 173 150-355 10-207 (253)
44 2zu0_C Probable ATP-dependent 99.9 6.7E-28 2.3E-32 227.6 6.4 190 148-356 24-245 (267)
45 2qi9_C Vitamin B12 import ATP- 99.9 3.2E-27 1.1E-31 220.8 8.8 179 158-355 14-212 (249)
46 3nh6_A ATP-binding cassette SU 99.9 9E-28 3.1E-32 230.7 2.2 188 148-357 57-269 (306)
47 1mv5_A LMRA, multidrug resista 99.9 5E-28 1.7E-32 225.3 -0.8 185 150-356 7-217 (243)
48 2cbz_A Multidrug resistance-as 99.9 9.3E-27 3.2E-31 216.0 5.1 176 150-356 9-208 (237)
49 2ghi_A Transport protein; mult 99.9 1E-26 3.5E-31 218.7 4.9 185 149-356 22-233 (260)
50 3gd7_A Fusion complex of cysti 99.9 9E-27 3.1E-31 230.6 3.7 186 148-356 23-233 (390)
51 2pze_A Cystic fibrosis transme 99.9 1.5E-26 5.1E-31 213.5 4.5 172 150-355 12-208 (229)
52 2pjz_A Hypothetical protein ST 99.9 1.3E-26 4.3E-31 218.4 3.6 175 151-355 8-205 (263)
53 3b5x_A Lipid A export ATP-bind 99.9 2.1E-25 7.3E-30 231.9 8.5 188 147-356 344-558 (582)
54 3b60_A Lipid A export ATP-bind 99.9 2.9E-25 1E-29 230.9 5.2 187 148-356 345-558 (582)
55 3qf4_A ABC transporter, ATP-bi 99.9 2.4E-25 8.2E-30 231.7 3.8 189 148-357 345-558 (587)
56 2bbs_A Cystic fibrosis transme 99.9 1E-24 3.5E-29 208.1 7.3 171 148-355 44-237 (290)
57 4a82_A Cystic fibrosis transme 99.9 1.6E-24 5.4E-29 225.2 8.4 188 148-357 343-556 (578)
58 3qf4_B Uncharacterized ABC tra 99.9 3.6E-24 1.2E-28 223.3 10.6 188 148-357 358-570 (598)
59 1yqt_A RNAse L inhibitor; ATP- 99.9 1.5E-24 5.3E-29 223.3 4.3 181 146-345 23-221 (538)
60 2yl4_A ATP-binding cassette SU 99.9 2.8E-24 9.7E-29 224.0 5.6 187 148-356 345-561 (595)
61 3bk7_A ABC transporter ATP-bin 99.9 5E-24 1.7E-28 222.1 5.8 178 147-345 94-291 (607)
62 3ozx_A RNAse L inhibitor; ATP 99.9 3.6E-23 1.2E-27 213.0 6.2 154 162-345 286-449 (538)
63 3bk7_A ABC transporter ATP-bin 99.9 4E-23 1.4E-27 215.3 6.6 152 162-345 374-535 (607)
64 1yqt_A RNAse L inhibitor; ATP- 99.9 3.8E-23 1.3E-27 212.9 5.4 152 162-345 304-465 (538)
65 3j16_B RLI1P; ribosome recycli 99.9 1.7E-22 5.6E-27 210.5 8.1 181 148-345 81-284 (608)
66 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-22 4.4E-27 208.8 4.9 160 167-345 22-200 (538)
67 4f4c_A Multidrug resistance pr 99.9 6.1E-22 2.1E-26 222.6 10.0 190 147-357 1079-1296(1321)
68 3g5u_A MCG1178, multidrug resi 99.8 1.3E-21 4.6E-26 219.3 8.4 188 148-356 391-604 (1284)
69 3j16_B RLI1P; ribosome recycli 99.8 1.7E-21 5.8E-26 202.9 7.4 154 160-345 363-531 (608)
70 3g5u_A MCG1178, multidrug resi 99.8 2.1E-21 7.1E-26 217.8 8.5 179 158-357 1047-1250(1284)
71 3ux8_A Excinuclease ABC, A sub 99.8 4.6E-21 1.6E-25 202.3 9.1 179 157-345 31-267 (670)
72 4f4c_A Multidrug resistance pr 99.8 1.1E-20 3.8E-25 212.3 9.3 188 148-356 419-632 (1321)
73 2iw3_A Elongation factor 3A; a 99.8 5.1E-21 1.7E-25 207.0 5.1 86 255-356 881-978 (986)
74 2iw3_A Elongation factor 3A; a 99.8 1.2E-20 4E-25 204.2 3.2 209 110-355 395-624 (986)
75 3ux8_A Excinuclease ABC, A sub 99.8 1.9E-19 6.4E-24 190.0 9.4 87 260-356 528-631 (670)
76 4aby_A DNA repair protein RECN 99.7 1.4E-17 4.8E-22 165.3 9.4 75 275-362 296-385 (415)
77 4gp7_A Metallophosphoesterase; 99.7 6.8E-18 2.3E-22 148.2 4.2 141 162-345 1-162 (171)
78 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.5E-18 5.2E-23 175.3 -0.5 175 145-355 119-329 (460)
79 2vf7_A UVRA2, excinuclease ABC 99.7 2.9E-17 1E-21 176.0 7.0 86 258-355 713-817 (842)
80 2r6f_A Excinuclease ABC subuni 99.7 2.1E-16 7.2E-21 170.1 11.6 86 258-355 828-932 (972)
81 3pih_A Uvrabc system protein A 99.7 2.5E-16 8.6E-21 170.1 11.8 87 259-355 789-892 (916)
82 3b85_A Phosphate starvation-in 99.6 1E-17 3.5E-22 152.1 -1.5 134 168-345 20-161 (208)
83 2ygr_A Uvrabc system protein A 99.6 5.5E-16 1.9E-20 167.4 10.4 76 258-345 846-929 (993)
84 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 8.3E-16 2.8E-20 150.9 9.9 75 269-355 274-363 (365)
85 1e69_A Chromosome segregation 99.5 1.1E-14 3.6E-19 140.5 10.3 65 267-344 212-284 (322)
86 1ye8_A Protein THEP1, hypothet 99.5 2.9E-15 9.9E-20 132.6 5.0 152 172-369 2-171 (178)
87 2obl_A ESCN; ATPase, hydrolase 99.5 2.5E-15 8.7E-20 146.5 5.0 184 148-355 49-245 (347)
88 1tf7_A KAIC; homohexamer, hexa 99.5 5.3E-15 1.8E-19 151.8 7.3 157 155-345 23-188 (525)
89 1tq4_A IIGP1, interferon-induc 99.5 2.5E-17 8.5E-22 164.0 -10.0 146 169-344 68-237 (413)
90 1znw_A Guanylate kinase, GMP k 99.5 2.9E-16 9.8E-21 141.7 -6.4 52 285-347 137-193 (207)
91 2dpy_A FLII, flagellum-specifi 99.5 1.7E-14 5.8E-19 144.9 5.1 182 148-355 135-334 (438)
92 1cr0_A DNA primase/helicase; R 99.5 3.3E-13 1.1E-17 127.9 12.7 160 158-342 23-197 (296)
93 3thx_A DNA mismatch repair pro 99.5 5.5E-14 1.9E-18 152.4 8.0 134 159-345 651-788 (934)
94 2ehv_A Hypothetical protein PH 99.5 1.5E-14 5.2E-19 132.6 2.9 42 166-207 26-69 (251)
95 3thx_B DNA mismatch repair pro 99.4 9.3E-14 3.2E-18 150.3 8.0 136 157-345 660-799 (918)
96 2eyu_A Twitching motility prot 99.4 2.6E-13 8.9E-18 127.2 9.0 117 160-344 17-135 (261)
97 1nlf_A Regulatory protein REPA 99.4 3.5E-13 1.2E-17 126.8 9.0 143 166-345 26-184 (279)
98 2pt7_A CAG-ALFA; ATPase, prote 99.4 6.9E-14 2.4E-18 135.5 4.1 48 160-207 161-208 (330)
99 1tf7_A KAIC; homohexamer, hexa 99.4 3.8E-13 1.3E-17 137.9 9.3 133 165-342 276-417 (525)
100 2o8b_B DNA mismatch repair pro 99.4 2.4E-13 8.3E-18 148.9 8.0 144 150-345 761-915 (1022)
101 1z6g_A Guanylate kinase; struc 99.4 2.3E-15 7.9E-20 137.2 -8.4 46 158-207 11-56 (218)
102 2v9p_A Replication protein E1; 99.4 3.9E-15 1.3E-19 142.6 -7.3 131 145-311 102-232 (305)
103 3qkt_A DNA double-strand break 99.4 3E-12 1E-16 124.2 11.5 65 268-344 242-316 (339)
104 3aez_A Pantothenate kinase; tr 99.3 3.8E-14 1.3E-18 136.3 -2.3 122 162-305 81-209 (312)
105 3sop_A Neuronal-specific septi 99.3 8.5E-15 2.9E-19 138.0 -7.6 143 172-344 4-152 (270)
106 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.3E-12 4.4E-17 118.0 6.0 147 166-343 19-169 (235)
107 2i3b_A HCR-ntpase, human cance 99.3 2.1E-13 7.1E-18 121.9 -0.1 37 170-208 1-37 (189)
108 1pzn_A RAD51, DNA repair and r 99.3 2E-12 6.8E-17 126.1 6.8 109 111-225 72-190 (349)
109 4a74_A DNA repair and recombin 99.3 2.5E-12 8.6E-17 116.2 7.0 42 167-208 22-70 (231)
110 1htw_A HI0065; nucleotide-bind 99.2 9.7E-13 3.3E-17 114.2 0.9 59 149-208 12-70 (158)
111 1wb9_A DNA mismatch repair pro 99.2 8.6E-12 2.9E-16 133.5 7.8 136 156-345 594-733 (800)
112 3jvv_A Twitching mobility prot 99.2 1.9E-11 6.5E-16 119.5 9.6 42 166-208 119-161 (356)
113 2o5v_A DNA replication and rep 99.2 6.7E-11 2.3E-15 115.7 11.5 73 269-356 259-347 (359)
114 3ec2_A DNA replication protein 99.2 1.4E-11 4.7E-16 108.0 5.3 35 165-199 33-67 (180)
115 2jeo_A Uridine-cytidine kinase 99.2 5.9E-12 2E-16 116.3 2.2 39 156-194 11-49 (245)
116 2qnr_A Septin-2, protein NEDD5 99.1 2.9E-12 9.8E-17 122.4 -1.5 159 148-344 2-169 (301)
117 1ewq_A DNA mismatch repair pro 99.1 2.2E-11 7.6E-16 129.7 4.7 41 158-201 567-608 (765)
118 2qm8_A GTPase/ATPase; G protei 99.1 5.4E-12 1.9E-16 122.4 -2.0 60 150-209 35-94 (337)
119 2ewv_A Twitching motility prot 99.1 4E-10 1.4E-14 110.7 10.0 41 167-207 133-174 (372)
120 3asz_A Uridine kinase; cytidin 99.0 1.3E-12 4.6E-17 117.2 -8.5 144 167-342 3-161 (211)
121 2kjq_A DNAA-related protein; s 99.0 5.6E-10 1.9E-14 95.6 7.3 30 169-198 35-64 (149)
122 1lw7_A Transcriptional regulat 99.0 7.2E-11 2.5E-15 115.4 1.6 43 161-203 159-207 (365)
123 2cvh_A DNA repair and recombin 99.0 4E-09 1.4E-13 94.4 12.6 38 167-207 17-54 (220)
124 1s96_A Guanylate kinase, GMP k 99.0 2E-10 7E-15 104.7 3.9 42 166-207 12-55 (219)
125 1n0w_A DNA repair protein RAD5 99.0 3.1E-09 1E-13 96.6 10.8 42 167-208 21-69 (243)
126 1pui_A ENGB, probable GTP-bind 98.9 3.3E-10 1.1E-14 100.8 3.7 152 148-313 7-191 (210)
127 2e87_A Hypothetical protein PH 98.9 1.1E-09 3.8E-14 106.7 6.8 202 71-313 44-272 (357)
128 1sxj_E Activator 1 40 kDa subu 98.9 3.4E-09 1.2E-13 102.1 8.9 161 173-370 39-202 (354)
129 3lda_A DNA repair protein RAD5 98.8 7.8E-08 2.7E-12 95.2 16.9 108 111-226 120-238 (400)
130 3szr_A Interferon-induced GTP- 98.8 2.4E-10 8.1E-15 119.2 -1.8 142 173-345 48-199 (608)
131 3euj_A Chromosome partition pr 98.8 1.1E-09 3.6E-14 110.9 2.6 51 158-209 18-68 (483)
132 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 4.8E-09 1.6E-13 89.9 6.2 65 268-344 51-125 (148)
133 2qag_B Septin-6, protein NEDD5 98.8 8.6E-10 3E-14 109.8 1.5 42 152-194 23-66 (427)
134 2bdt_A BH3686; alpha-beta prot 98.8 3.5E-10 1.2E-14 99.6 -1.9 35 170-207 2-36 (189)
135 1sq5_A Pantothenate kinase; P- 98.8 2.4E-09 8.4E-14 102.3 3.6 42 168-209 78-121 (308)
136 2bbw_A Adenylate kinase 4, AK4 98.8 5.1E-11 1.7E-15 109.9 -8.0 37 169-205 26-65 (246)
137 3pih_A Uvrabc system protein A 98.8 6.9E-09 2.4E-13 112.2 7.0 76 260-345 449-529 (916)
138 2gza_A Type IV secretion syste 98.8 2.2E-09 7.5E-14 105.0 2.7 54 153-206 158-211 (361)
139 1nij_A Hypothetical protein YJ 98.7 1.4E-08 4.9E-13 97.4 7.7 38 171-208 5-50 (318)
140 1udx_A The GTP-binding protein 98.7 5.4E-09 1.8E-13 104.1 2.6 35 160-194 147-181 (416)
141 2vf7_A UVRA2, excinuclease ABC 98.7 8.4E-09 2.9E-13 110.7 4.2 76 260-345 364-444 (842)
142 2dr3_A UPF0273 protein PH0284; 98.7 6.1E-08 2.1E-12 88.0 9.1 43 166-208 19-61 (247)
143 3lnc_A Guanylate kinase, GMP k 98.6 6.1E-09 2.1E-13 94.8 2.1 36 160-195 17-53 (231)
144 2qag_C Septin-7; cell cycle, c 98.6 4E-09 1.4E-13 105.0 -0.4 44 148-197 15-58 (418)
145 2r6a_A DNAB helicase, replicat 98.6 9.2E-07 3.1E-11 88.8 16.3 45 164-208 197-242 (454)
146 3tr0_A Guanylate kinase, GMP k 98.6 2.7E-08 9.1E-13 88.2 4.3 41 164-208 1-41 (205)
147 1zp6_A Hypothetical protein AT 98.6 3.5E-08 1.2E-12 86.5 4.6 40 166-207 5-44 (191)
148 2r6f_A Excinuclease ABC subuni 98.5 7E-08 2.4E-12 104.3 5.7 87 259-355 488-590 (972)
149 2ygr_A Uvrabc system protein A 98.5 9.2E-08 3.2E-12 103.6 6.5 81 260-350 506-596 (993)
150 2x8a_A Nuclear valosin-contain 98.5 8.1E-08 2.8E-12 90.2 4.7 151 141-313 17-188 (274)
151 3c8u_A Fructokinase; YP_612366 98.5 1.1E-07 3.7E-12 85.2 5.1 31 167-197 19-49 (208)
152 1odf_A YGR205W, hypothetical 3 98.4 8.6E-08 2.9E-12 90.9 3.9 42 168-209 29-73 (290)
153 3uie_A Adenylyl-sulfate kinase 98.4 4.5E-08 1.5E-12 87.1 1.7 54 152-206 7-62 (200)
154 2oap_1 GSPE-2, type II secreti 98.4 7.2E-08 2.5E-12 98.4 3.0 47 161-207 251-297 (511)
155 3tqc_A Pantothenate kinase; bi 98.4 7.6E-08 2.6E-12 92.6 3.0 43 169-211 91-135 (321)
156 1rz3_A Hypothetical protein rb 98.4 2.6E-07 8.8E-12 82.3 5.6 44 167-210 19-62 (201)
157 2zr9_A Protein RECA, recombina 98.4 1.5E-06 5.2E-11 84.4 11.2 41 167-207 58-98 (349)
158 1u0l_A Probable GTPase ENGC; p 98.4 8.7E-08 3E-12 91.2 2.3 45 166-210 165-212 (301)
159 1p9r_A General secretion pathw 98.4 2.3E-07 7.8E-12 92.4 5.3 40 168-207 165-204 (418)
160 1lvg_A Guanylate kinase, GMP k 98.4 1.2E-07 4E-12 84.6 2.8 28 168-195 2-29 (198)
161 3a00_A Guanylate kinase, GMP k 98.4 1.3E-07 4.3E-12 83.2 2.9 28 170-197 1-28 (186)
162 1qhl_A Protein (cell division 98.4 1.5E-08 5E-13 92.9 -3.5 44 164-208 22-65 (227)
163 1oix_A RAS-related protein RAB 98.4 1E-07 3.4E-12 83.9 1.8 26 171-196 30-55 (191)
164 4eun_A Thermoresistant glucoki 98.3 4.7E-07 1.6E-11 80.4 6.1 40 166-209 25-64 (200)
165 2p67_A LAO/AO transport system 98.3 1.8E-07 6.2E-12 90.5 2.4 49 162-210 48-96 (341)
166 3kta_B Chromosome segregation 98.3 8E-07 2.7E-11 77.9 6.1 64 268-344 58-129 (173)
167 1t9h_A YLOQ, probable GTPase E 98.3 1.3E-07 4.3E-12 90.5 0.8 45 165-209 168-215 (307)
168 2j41_A Guanylate kinase; GMP, 98.3 3.6E-07 1.2E-11 80.8 3.2 34 166-199 2-35 (207)
169 2yv5_A YJEQ protein; hydrolase 98.2 3.4E-07 1.2E-11 87.1 3.0 43 167-210 162-207 (302)
170 3kta_A Chromosome segregation 98.2 5.9E-07 2E-11 78.1 4.3 39 161-200 18-56 (182)
171 2f9l_A RAB11B, member RAS onco 98.2 4.3E-07 1.5E-11 80.1 3.4 23 172-194 7-29 (199)
172 2f1r_A Molybdopterin-guanine d 98.2 3.4E-07 1.2E-11 80.1 1.9 39 171-209 3-44 (171)
173 4ad8_A DNA repair protein RECN 98.2 3.2E-07 1.1E-11 93.7 1.5 63 270-345 392-461 (517)
174 1kgd_A CASK, peripheral plasma 98.2 7E-07 2.4E-11 78.1 3.3 35 169-203 4-39 (180)
175 2vp4_A Deoxynucleoside kinase; 98.2 1E-06 3.4E-11 80.2 3.9 40 165-208 15-54 (230)
176 2ius_A DNA translocase FTSK; n 98.1 2.1E-06 7.1E-11 87.4 6.5 49 161-209 158-208 (512)
177 1ixz_A ATP-dependent metallopr 98.1 5.7E-07 1.9E-11 82.7 2.2 55 149-207 30-84 (254)
178 3vaa_A Shikimate kinase, SK; s 98.1 1.1E-06 3.8E-11 77.9 3.8 37 158-194 13-49 (199)
179 1iy2_A ATP-dependent metallopr 98.1 6.7E-07 2.3E-11 83.5 2.3 55 149-207 54-108 (278)
180 3hr8_A Protein RECA; alpha and 98.1 2.6E-05 8.8E-10 75.9 13.2 41 167-207 58-98 (356)
181 2rcn_A Probable GTPase ENGC; Y 98.1 1.1E-06 3.8E-11 85.6 3.4 42 162-204 208-250 (358)
182 3nwj_A ATSK2; P loop, shikimat 98.1 3.4E-07 1.2E-11 84.9 -0.6 48 147-194 20-72 (250)
183 2www_A Methylmalonic aciduria 98.1 3.1E-06 1.1E-10 82.1 5.6 43 169-211 73-115 (349)
184 3cr8_A Sulfate adenylyltranfer 98.1 1.7E-06 5.9E-11 88.9 3.8 44 166-209 365-409 (552)
185 1fnn_A CDC6P, cell division co 98.1 2.5E-05 8.4E-10 75.4 11.7 34 172-205 46-80 (389)
186 3k1j_A LON protease, ATP-depen 98.0 7.1E-07 2.4E-11 92.8 0.8 57 149-205 39-96 (604)
187 1knq_A Gluconate kinase; ALFA/ 98.0 3.9E-06 1.3E-10 72.4 5.2 37 168-208 6-42 (175)
188 3tau_A Guanylate kinase, GMP k 98.0 2.4E-06 8E-11 76.5 3.8 29 168-196 6-34 (208)
189 4e22_A Cytidylate kinase; P-lo 98.0 1.3E-06 4.6E-11 80.6 0.9 35 168-202 25-62 (252)
190 2yvu_A Probable adenylyl-sulfa 98.0 5.6E-06 1.9E-10 72.3 4.5 43 167-209 10-52 (186)
191 1in4_A RUVB, holliday junction 97.9 1.2E-07 4E-12 91.4 -6.9 34 170-203 51-88 (334)
192 2dy1_A Elongation factor G; tr 97.9 2.1E-06 7.3E-11 90.2 2.0 37 165-201 4-42 (665)
193 3ney_A 55 kDa erythrocyte memb 97.9 4.5E-06 1.6E-10 74.6 3.6 31 165-195 14-44 (197)
194 2z4s_A Chromosomal replication 97.9 3.5E-05 1.2E-09 77.0 9.6 34 170-203 130-165 (440)
195 2ce7_A Cell division protein F 97.9 3.6E-05 1.2E-09 77.7 9.8 32 161-194 42-73 (476)
196 3p32_A Probable GTPase RV1496/ 97.9 1.9E-05 6.7E-10 76.5 7.6 118 169-302 78-205 (355)
197 3m6a_A ATP-dependent protease 97.9 3.3E-06 1.1E-10 86.7 2.0 55 149-204 88-142 (543)
198 3auy_A DNA double-strand break 97.9 1.4E-05 4.7E-10 78.0 6.1 62 270-344 276-348 (371)
199 1w1w_A Structural maintenance 97.9 1.5E-05 5.2E-10 79.2 6.4 63 270-344 329-399 (430)
200 1svm_A Large T antigen; AAA+ f 97.8 6.3E-06 2.2E-10 80.8 3.1 41 160-203 159-199 (377)
201 2pez_A Bifunctional 3'-phospho 97.8 1.7E-05 5.7E-10 68.8 4.5 36 168-203 3-39 (179)
202 1kag_A SKI, shikimate kinase I 97.8 1.1E-05 3.9E-10 69.1 3.2 27 169-195 3-29 (173)
203 3t34_A Dynamin-related protein 97.8 2.8E-06 9.6E-11 82.5 -0.9 40 159-201 26-67 (360)
204 4eaq_A DTMP kinase, thymidylat 97.7 2.3E-05 7.7E-10 71.4 5.0 44 160-204 13-59 (229)
205 2qt1_A Nicotinamide riboside k 97.7 2.5E-05 8.7E-10 69.2 4.8 31 165-195 16-46 (207)
206 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.7E-05 5.9E-10 78.1 3.8 40 166-205 16-67 (392)
207 1m7g_A Adenylylsulfate kinase; 97.7 1.6E-05 5.5E-10 70.9 3.2 41 167-208 22-64 (211)
208 2qby_A CDC6 homolog 1, cell di 97.7 5.5E-05 1.9E-09 72.5 6.9 30 168-197 43-72 (386)
209 2xau_A PRE-mRNA-splicing facto 97.7 1.5E-05 5.3E-10 85.1 3.3 57 168-226 107-166 (773)
210 1w1w_A Structural maintenance 97.6 2.5E-05 8.5E-10 77.6 4.1 34 165-198 21-54 (430)
211 2dhr_A FTSH; AAA+ protein, hex 97.6 8.4E-05 2.9E-09 75.4 7.3 55 150-208 46-100 (499)
212 1l8q_A Chromosomal replication 97.6 0.00015 5.2E-09 68.8 8.6 35 170-204 37-71 (324)
213 1cke_A CK, MSSA, protein (cyti 97.6 1.5E-05 5E-10 71.5 1.1 25 170-194 5-29 (227)
214 1gvn_B Zeta; postsegregational 97.6 9.8E-05 3.3E-09 69.5 6.7 63 139-211 9-71 (287)
215 1np6_A Molybdopterin-guanine d 97.5 8.2E-05 2.8E-09 65.0 5.0 37 170-206 6-42 (174)
216 2p5t_B PEZT; postsegregational 97.5 0.00014 4.9E-09 66.8 6.9 42 167-211 29-70 (253)
217 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.8E-05 2.3E-09 63.6 3.9 32 162-194 16-47 (149)
218 1xjc_A MOBB protein homolog; s 97.5 0.0001 3.5E-09 64.1 5.1 37 171-207 5-41 (169)
219 1jjv_A Dephospho-COA kinase; P 97.4 4.6E-05 1.6E-09 67.4 2.6 33 171-208 3-35 (206)
220 1njg_A DNA polymerase III subu 97.4 0.0011 3.6E-08 58.5 10.9 27 171-197 46-72 (250)
221 4a1f_A DNAB helicase, replicat 97.4 0.00082 2.8E-08 64.8 10.9 42 167-208 43-84 (338)
222 3t61_A Gluconokinase; PSI-biol 97.4 0.00015 5.1E-09 63.9 5.2 33 170-206 18-50 (202)
223 1sxj_C Activator 1 40 kDa subu 97.3 1.1E-05 3.9E-10 77.3 -2.8 33 168-200 42-76 (340)
224 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4.2E-09 63.7 3.7 32 162-193 2-33 (184)
225 2qor_A Guanylate kinase; phosp 97.3 0.00011 3.8E-09 65.1 3.2 29 167-195 9-37 (204)
226 2if2_A Dephospho-COA kinase; a 97.2 0.00016 5.3E-09 63.7 3.4 21 172-192 3-23 (204)
227 2z43_A DNA repair and recombin 97.2 0.0012 4E-08 63.0 9.4 108 110-226 48-167 (324)
228 1lv7_A FTSH; alpha/beta domain 97.2 0.00027 9.1E-09 64.7 4.5 24 172-195 47-70 (257)
229 2v1u_A Cell division control p 97.2 0.0031 1.1E-07 60.3 12.2 28 169-196 43-70 (387)
230 1gtv_A TMK, thymidylate kinase 97.2 0.00011 3.9E-09 64.9 1.8 33 172-204 2-34 (214)
231 3qks_A DNA double-strand break 97.2 0.00024 8.2E-09 63.3 3.9 31 163-194 17-47 (203)
232 4fcw_A Chaperone protein CLPB; 97.1 0.0017 5.9E-08 60.5 9.5 39 169-207 46-84 (311)
233 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00041 1.4E-08 67.8 5.3 37 169-205 34-70 (392)
234 2gj8_A MNME, tRNA modification 97.1 0.0003 1E-08 60.2 3.5 26 169-194 3-28 (172)
235 3cm0_A Adenylate kinase; ATP-b 97.1 0.0003 1E-08 60.8 3.4 26 169-194 3-28 (186)
236 2q6t_A DNAB replication FORK h 97.0 0.0062 2.1E-07 60.5 13.2 42 167-208 197-239 (444)
237 4ad8_A DNA repair protein RECN 97.0 0.00016 5.5E-09 73.6 1.6 35 158-193 49-83 (517)
238 3ice_A Transcription terminati 97.0 0.0003 1E-08 69.0 3.3 35 162-196 166-200 (422)
239 3h4m_A Proteasome-activating n 97.0 0.0024 8.2E-08 59.0 9.3 27 168-194 49-75 (285)
240 3bh0_A DNAB-like replicative h 97.0 0.0026 8.9E-08 60.4 9.6 42 167-208 65-106 (315)
241 1q3t_A Cytidylate kinase; nucl 96.9 0.00053 1.8E-08 62.1 3.9 27 168-194 14-40 (236)
242 3kb2_A SPBC2 prophage-derived 96.9 0.00049 1.7E-08 58.3 3.5 23 172-194 3-25 (173)
243 3bos_A Putative DNA replicatio 96.9 0.00098 3.4E-08 59.3 5.6 38 169-206 51-88 (242)
244 1sxj_D Activator 1 41 kDa subu 96.9 0.0014 4.8E-08 62.2 7.1 23 173-195 61-83 (353)
245 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00064 2.2E-08 62.7 4.5 41 169-209 3-43 (260)
246 2wji_A Ferrous iron transport 96.9 0.00045 1.5E-08 58.5 3.1 24 171-194 4-27 (165)
247 1ega_A Protein (GTP-binding pr 96.9 0.00039 1.3E-08 65.8 2.8 25 169-193 7-31 (301)
248 1v5w_A DMC1, meiotic recombina 96.9 0.0017 5.8E-08 62.5 7.2 57 167-226 119-182 (343)
249 2rhm_A Putative kinase; P-loop 96.9 0.00069 2.3E-08 58.6 4.0 27 168-194 3-29 (193)
250 2w58_A DNAI, primosome compone 96.9 0.00096 3.3E-08 58.5 5.0 34 171-204 55-88 (202)
251 3r20_A Cytidylate kinase; stru 96.8 0.00082 2.8E-08 61.4 4.5 39 169-211 8-46 (233)
252 3cio_A ETK, tyrosine-protein k 96.8 0.0014 4.8E-08 61.9 6.2 42 169-210 103-145 (299)
253 1qhx_A CPT, protein (chloramph 96.8 0.00071 2.4E-08 57.9 3.7 26 170-195 3-28 (178)
254 1kht_A Adenylate kinase; phosp 96.8 0.00069 2.4E-08 58.4 3.7 28 170-197 3-30 (192)
255 2i1q_A DNA repair and recombin 96.8 0.01 3.4E-07 56.2 12.1 76 112-193 41-121 (322)
256 4dcu_A GTP-binding protein ENG 96.8 0.00042 1.4E-08 69.3 2.3 23 171-193 24-46 (456)
257 2plr_A DTMP kinase, probable t 96.8 0.0011 3.7E-08 58.1 4.8 34 169-203 3-36 (213)
258 1uf9_A TT1252 protein; P-loop, 96.8 0.00062 2.1E-08 59.4 3.1 35 169-208 7-41 (203)
259 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00035 1.2E-08 67.7 1.5 30 166-195 18-49 (359)
260 2wjg_A FEOB, ferrous iron tran 96.8 0.0007 2.4E-08 58.0 3.3 23 171-193 8-30 (188)
261 1nks_A Adenylate kinase; therm 96.7 0.0012 4.2E-08 56.8 4.5 33 172-204 3-35 (194)
262 2ze6_A Isopentenyl transferase 96.7 0.00089 3.1E-08 61.6 3.6 24 171-194 2-25 (253)
263 1m2o_B GTP-binding protein SAR 96.7 0.00092 3.1E-08 58.1 3.5 32 160-192 14-45 (190)
264 2zej_A Dardarin, leucine-rich 96.7 0.0007 2.4E-08 58.4 2.7 23 172-194 4-26 (184)
265 1yrb_A ATP(GTP)binding protein 96.7 0.0018 6.1E-08 59.0 5.6 40 168-208 12-51 (262)
266 2jaq_A Deoxyguanosine kinase; 96.7 0.00092 3.2E-08 58.2 3.5 24 172-195 2-25 (205)
267 2wsm_A Hydrogenase expression/ 96.7 0.0023 7.9E-08 56.6 6.1 40 170-210 30-69 (221)
268 1ly1_A Polynucleotide kinase; 96.7 0.001 3.5E-08 56.7 3.6 37 170-210 2-38 (181)
269 3iij_A Coilin-interacting nucl 96.6 0.00097 3.3E-08 57.4 3.3 27 168-194 9-35 (180)
270 2orw_A Thymidine kinase; TMTK, 96.6 0.002 6.8E-08 56.4 5.2 36 169-204 2-37 (184)
271 3trf_A Shikimate kinase, SK; a 96.6 0.0012 4.2E-08 56.9 3.7 25 170-194 5-29 (185)
272 1nn5_A Similar to deoxythymidy 96.6 0.0019 6.4E-08 56.8 5.0 34 168-201 7-40 (215)
273 1mky_A Probable GTP-binding pr 96.6 0.0011 3.7E-08 66.0 3.8 26 170-195 180-205 (439)
274 3umf_A Adenylate kinase; rossm 96.6 0.0013 4.3E-08 59.5 3.8 43 166-212 25-67 (217)
275 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.4E-08 57.0 3.8 27 168-194 7-33 (196)
276 3llm_A ATP-dependent RNA helic 96.6 0.0019 6.4E-08 58.3 5.0 25 169-193 75-99 (235)
277 1a7j_A Phosphoribulokinase; tr 96.6 0.0009 3.1E-08 63.0 3.0 41 169-209 4-44 (290)
278 1via_A Shikimate kinase; struc 96.6 0.00099 3.4E-08 57.1 2.9 23 172-194 6-28 (175)
279 1tev_A UMP-CMP kinase; ploop, 96.6 0.0013 4.6E-08 56.6 3.8 26 169-194 2-27 (196)
280 1vht_A Dephospho-COA kinase; s 96.6 0.0014 4.8E-08 58.2 3.9 24 169-192 3-26 (218)
281 2z0h_A DTMP kinase, thymidylat 96.6 0.0019 6.6E-08 55.9 4.7 32 172-203 2-33 (197)
282 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 57.3 3.8 26 169-194 3-28 (204)
283 3cf0_A Transitional endoplasmi 96.6 0.0012 3.9E-08 62.2 3.5 36 167-204 46-81 (301)
284 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 55.7 3.1 19 172-190 3-21 (179)
285 2qtf_A Protein HFLX, GTP-bindi 96.5 0.001 3.4E-08 64.8 3.0 24 172-195 181-204 (364)
286 1ex7_A Guanylate kinase; subst 96.5 0.0012 4.2E-08 58.1 3.1 22 173-194 4-25 (186)
287 2ohf_A Protein OLA1, GTP-bindi 96.5 0.00095 3.3E-08 65.7 2.5 27 167-193 19-45 (396)
288 3te6_A Regulatory protein SIR3 96.5 0.013 4.3E-07 56.0 10.3 28 169-196 44-71 (318)
289 3bgw_A DNAB-like replicative h 96.5 0.013 4.6E-07 58.3 10.9 42 167-208 194-235 (444)
290 2wwf_A Thymidilate kinase, put 96.5 0.0025 8.6E-08 56.0 5.0 34 168-201 8-41 (212)
291 1ypw_A Transitional endoplasmi 96.5 0.0013 4.3E-08 70.7 3.5 52 143-196 213-264 (806)
292 2bwj_A Adenylate kinase 5; pho 96.4 0.00096 3.3E-08 58.0 2.0 27 168-194 10-36 (199)
293 3auy_A DNA double-strand break 96.4 0.0013 4.4E-08 63.9 3.0 30 162-192 18-47 (371)
294 1f6b_A SAR1; gtpases, N-termin 96.4 0.00075 2.6E-08 59.1 1.2 30 162-192 18-47 (198)
295 4edh_A DTMP kinase, thymidylat 96.4 0.0029 1E-07 56.7 5.1 36 169-204 5-40 (213)
296 1u94_A RECA protein, recombina 96.4 0.003 1E-07 61.3 5.3 41 167-207 60-100 (356)
297 1qf9_A UMP/CMP kinase, protein 96.4 0.0024 8.3E-08 54.9 4.0 26 169-194 5-30 (194)
298 3lxx_A GTPase IMAP family memb 96.3 0.0018 6.1E-08 58.5 3.2 28 171-198 30-57 (239)
299 2vli_A Antibiotic resistance p 96.3 0.0014 4.8E-08 56.2 2.4 26 169-194 4-29 (183)
300 1aky_A Adenylate kinase; ATP:A 96.3 0.0024 8.1E-08 56.9 3.8 38 169-210 3-40 (220)
301 2pbr_A DTMP kinase, thymidylat 96.3 0.0031 1E-07 54.4 4.4 31 172-202 2-32 (195)
302 4tmk_A Protein (thymidylate ki 96.3 0.0035 1.2E-07 56.3 4.9 35 169-203 2-37 (213)
303 3b9p_A CG5977-PA, isoform A; A 96.3 0.0043 1.5E-07 57.6 5.6 26 169-194 53-78 (297)
304 1ukz_A Uridylate kinase; trans 96.3 0.0027 9.3E-08 55.5 3.9 28 167-194 12-39 (203)
305 3cmu_A Protein RECA, recombina 96.3 0.012 4E-07 68.4 10.0 41 167-207 1424-1464(2050)
306 3tlx_A Adenylate kinase 2; str 96.3 0.0025 8.6E-08 58.1 3.8 39 169-211 28-66 (243)
307 3ake_A Cytidylate kinase; CMP 96.2 0.0025 8.4E-08 55.7 3.5 23 172-194 4-26 (208)
308 1uj2_A Uridine-cytidine kinase 96.2 0.0044 1.5E-07 56.6 5.2 27 169-195 21-47 (252)
309 1zd8_A GTP:AMP phosphotransfer 96.2 0.0025 8.6E-08 57.1 3.5 26 169-194 6-31 (227)
310 1jbk_A CLPB protein; beta barr 96.2 0.0051 1.8E-07 52.1 5.2 27 170-196 43-69 (195)
311 1zak_A Adenylate kinase; ATP:A 96.2 0.0024 8.3E-08 56.9 3.3 27 169-195 4-30 (222)
312 2cdn_A Adenylate kinase; phosp 96.2 0.003 1E-07 55.3 3.9 26 169-194 19-44 (201)
313 3lv8_A DTMP kinase, thymidylat 96.2 0.0043 1.5E-07 56.6 4.9 35 169-203 26-61 (236)
314 3k53_A Ferrous iron transport 96.2 0.0024 8E-08 59.1 3.2 25 171-195 4-28 (271)
315 3cmw_A Protein RECA, recombina 96.2 0.019 6.6E-07 65.7 11.1 42 167-208 729-770 (1706)
316 2qag_A Septin-2, protein NEDD5 96.2 0.00073 2.5E-08 65.6 -0.4 23 173-195 40-62 (361)
317 3v9p_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 57.2 3.8 36 168-203 23-62 (227)
318 2hf9_A Probable hydrogenase ni 96.1 0.0053 1.8E-07 54.4 5.1 38 171-209 39-76 (226)
319 3sr0_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 56.2 3.7 37 172-212 2-38 (206)
320 3d3q_A TRNA delta(2)-isopenten 96.1 0.0048 1.6E-07 59.4 4.9 25 171-195 8-32 (340)
321 2ged_A SR-beta, signal recogni 96.1 0.0033 1.1E-07 54.1 3.4 25 170-194 48-72 (193)
322 1g41_A Heat shock protein HSLU 96.1 0.0059 2E-07 60.9 5.6 26 171-196 51-76 (444)
323 2xb4_A Adenylate kinase; ATP-b 96.0 0.0032 1.1E-07 56.4 3.3 35 172-210 2-36 (223)
324 2dyk_A GTP-binding protein; GT 95.9 0.0043 1.5E-07 51.3 3.4 23 172-194 3-25 (161)
325 2ce2_X GTPase HRAS; signaling 95.9 0.0039 1.3E-07 51.5 3.1 23 172-194 5-27 (166)
326 1z2a_A RAS-related protein RAB 95.9 0.0039 1.3E-07 51.8 3.2 22 172-193 7-28 (168)
327 2iyv_A Shikimate kinase, SK; t 95.9 0.0035 1.2E-07 53.9 2.9 24 171-194 3-26 (184)
328 1e6c_A Shikimate kinase; phosp 95.9 0.0036 1.2E-07 53.0 2.9 24 171-194 3-26 (173)
329 2p65_A Hypothetical protein PF 95.9 0.0065 2.2E-07 51.4 4.5 27 170-196 43-69 (187)
330 3e1s_A Exodeoxyribonuclease V, 95.9 0.0065 2.2E-07 62.6 5.3 42 169-211 203-244 (574)
331 3fb4_A Adenylate kinase; psych 95.9 0.0044 1.5E-07 54.7 3.5 35 172-210 2-36 (216)
332 1xp8_A RECA protein, recombina 95.9 0.0071 2.4E-07 58.8 5.2 42 167-208 71-112 (366)
333 1q57_A DNA primase/helicase; d 95.9 0.024 8.2E-07 57.1 9.3 42 167-208 239-281 (503)
334 2lkc_A Translation initiation 95.9 0.0052 1.8E-07 51.8 3.7 25 169-193 7-31 (178)
335 2pt5_A Shikimate kinase, SK; a 95.9 0.0048 1.7E-07 52.0 3.5 23 172-194 2-24 (168)
336 3ld9_A DTMP kinase, thymidylat 95.9 0.0091 3.1E-07 54.0 5.4 36 168-203 19-55 (223)
337 3fwy_A Light-independent proto 95.9 0.0087 3E-07 56.9 5.5 45 164-208 42-86 (314)
338 1zuh_A Shikimate kinase; alpha 95.9 0.0051 1.7E-07 52.1 3.5 25 170-194 7-31 (168)
339 1kao_A RAP2A; GTP-binding prot 95.8 0.0046 1.6E-07 51.2 3.1 22 172-193 5-26 (167)
340 1z0j_A RAB-22, RAS-related pro 95.8 0.0047 1.6E-07 51.5 3.1 23 172-194 8-30 (170)
341 1u8z_A RAS-related protein RAL 95.8 0.0047 1.6E-07 51.1 3.2 22 172-193 6-27 (168)
342 1xx6_A Thymidine kinase; NESG, 95.8 0.0097 3.3E-07 52.5 5.3 38 168-205 6-43 (191)
343 3d8b_A Fidgetin-like protein 1 95.8 0.012 4.1E-07 56.7 6.4 27 168-194 115-141 (357)
344 3dl0_A Adenylate kinase; phosp 95.8 0.005 1.7E-07 54.5 3.4 35 172-210 2-36 (216)
345 2erx_A GTP-binding protein DI- 95.8 0.0046 1.6E-07 51.5 3.0 22 172-193 5-26 (172)
346 1g16_A RAS-related protein SEC 95.8 0.0047 1.6E-07 51.4 3.1 22 172-193 5-26 (170)
347 2nzj_A GTP-binding protein REM 95.8 0.0044 1.5E-07 52.0 2.9 23 172-194 6-28 (175)
348 3a8t_A Adenylate isopentenyltr 95.8 0.0055 1.9E-07 58.9 3.8 26 169-194 39-64 (339)
349 1sky_E F1-ATPase, F1-ATP synth 95.8 0.006 2.1E-07 61.2 4.2 38 166-203 147-184 (473)
350 3q72_A GTP-binding protein RAD 95.8 0.0038 1.3E-07 52.0 2.3 23 172-194 4-26 (166)
351 1z08_A RAS-related protein RAB 95.8 0.0051 1.7E-07 51.3 3.2 22 172-193 8-29 (170)
352 1ek0_A Protein (GTP-binding pr 95.8 0.0052 1.8E-07 51.1 3.2 23 172-194 5-27 (170)
353 3end_A Light-independent proto 95.8 0.01 3.5E-07 55.6 5.5 42 168-209 39-80 (307)
354 1ky3_A GTP-binding protein YPT 95.7 0.0052 1.8E-07 51.8 3.1 24 171-194 9-32 (182)
355 2b8t_A Thymidine kinase; deoxy 95.7 0.01 3.6E-07 53.6 5.2 37 168-204 10-46 (223)
356 3q85_A GTP-binding protein REM 95.7 0.005 1.7E-07 51.4 2.9 23 172-194 4-26 (169)
357 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0054 1.8E-07 51.6 3.1 22 172-193 9-30 (177)
358 2zts_A Putative uncharacterize 95.7 0.017 5.7E-07 51.7 6.6 42 167-208 27-69 (251)
359 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.019 6.5E-07 51.9 7.0 27 168-194 37-63 (262)
360 1svi_A GTP-binding protein YSX 95.7 0.0054 1.9E-07 52.7 3.1 24 170-193 23-46 (195)
361 1c1y_A RAS-related protein RAP 95.7 0.0057 1.9E-07 50.8 3.2 22 172-193 5-26 (167)
362 1fzq_A ADP-ribosylation factor 95.7 0.0052 1.8E-07 52.6 3.0 24 170-193 16-39 (181)
363 3be4_A Adenylate kinase; malar 95.7 0.006 2E-07 54.3 3.5 26 169-194 4-29 (217)
364 3pqc_A Probable GTP-binding pr 95.7 0.0055 1.9E-07 52.4 3.1 24 171-194 24-47 (195)
365 2fn4_A P23, RAS-related protei 95.7 0.0055 1.9E-07 51.6 3.1 23 171-193 10-32 (181)
366 1r2q_A RAS-related protein RAB 95.7 0.0059 2E-07 50.7 3.2 22 172-193 8-29 (170)
367 2qgz_A Helicase loader, putati 95.7 0.011 3.7E-07 56.0 5.2 35 170-204 152-187 (308)
368 2grj_A Dephospho-COA kinase; T 95.6 0.011 3.8E-07 52.1 4.9 26 169-194 11-36 (192)
369 3b1v_A Ferrous iron uptake tra 95.6 0.0056 1.9E-07 56.9 3.1 23 171-193 4-26 (272)
370 3hws_A ATP-dependent CLP prote 95.6 0.015 5E-07 56.0 6.1 26 169-194 50-75 (363)
371 2cxx_A Probable GTP-binding pr 95.6 0.0054 1.9E-07 52.3 2.8 23 172-194 3-25 (190)
372 2oil_A CATX-8, RAS-related pro 95.6 0.0063 2.1E-07 52.3 3.2 22 172-193 27-48 (193)
373 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0064 2.2E-07 51.7 3.1 23 172-194 6-28 (189)
374 3exa_A TRNA delta(2)-isopenten 95.6 0.0076 2.6E-07 57.4 3.9 25 170-194 3-27 (322)
375 3tw8_B RAS-related protein RAB 95.6 0.0049 1.7E-07 51.9 2.4 22 172-193 11-32 (181)
376 2y8e_A RAB-protein 6, GH09086P 95.6 0.0066 2.2E-07 51.0 3.1 22 172-193 16-37 (179)
377 3bc1_A RAS-related protein RAB 95.6 0.0067 2.3E-07 51.6 3.2 22 172-193 13-34 (195)
378 3t1o_A Gliding protein MGLA; G 95.6 0.0068 2.3E-07 51.8 3.2 25 172-196 16-40 (198)
379 1moz_A ARL1, ADP-ribosylation 95.6 0.0046 1.6E-07 52.4 2.1 24 169-192 17-40 (183)
380 1ak2_A Adenylate kinase isoenz 95.6 0.0083 2.8E-07 53.9 3.9 26 169-194 15-40 (233)
381 1r8s_A ADP-ribosylation factor 95.5 0.007 2.4E-07 50.2 3.2 22 172-193 2-23 (164)
382 1upt_A ARL1, ADP-ribosylation 95.5 0.0092 3.2E-07 49.8 3.9 25 169-193 6-30 (171)
383 3clv_A RAB5 protein, putative; 95.5 0.0069 2.4E-07 51.8 3.1 24 171-194 8-31 (208)
384 2f6r_A COA synthase, bifunctio 95.5 0.0078 2.7E-07 56.1 3.7 24 169-192 74-97 (281)
385 4hlc_A DTMP kinase, thymidylat 95.5 0.012 4.1E-07 52.3 4.8 34 170-204 2-35 (205)
386 1nrj_B SR-beta, signal recogni 95.5 0.0075 2.6E-07 53.0 3.4 24 171-194 13-36 (218)
387 3con_A GTPase NRAS; structural 95.5 0.0078 2.7E-07 51.5 3.4 24 171-194 22-45 (190)
388 1z0f_A RAB14, member RAS oncog 95.5 0.0073 2.5E-07 50.7 3.2 24 171-194 16-39 (179)
389 2a9k_A RAS-related protein RAL 95.5 0.0073 2.5E-07 51.1 3.2 23 171-193 19-41 (187)
390 1e4v_A Adenylate kinase; trans 95.5 0.0078 2.7E-07 53.3 3.5 35 172-210 2-36 (214)
391 2hxs_A RAB-26, RAS-related pro 95.5 0.0074 2.5E-07 50.8 3.2 22 172-193 8-29 (178)
392 2qmh_A HPR kinase/phosphorylas 95.5 0.0083 2.8E-07 53.5 3.5 34 160-194 25-58 (205)
393 3crm_A TRNA delta(2)-isopenten 95.5 0.0083 2.9E-07 57.3 3.7 25 170-194 5-29 (323)
394 3ihw_A Centg3; RAS, centaurin, 95.4 0.0076 2.6E-07 51.9 3.2 23 171-193 21-43 (184)
395 3zvl_A Bifunctional polynucleo 95.4 0.0093 3.2E-07 58.8 4.2 37 168-209 256-292 (416)
396 2g6b_A RAS-related protein RAB 95.4 0.0078 2.7E-07 50.8 3.2 24 171-194 11-34 (180)
397 3izq_1 HBS1P, elongation facto 95.4 0.006 2.1E-07 63.3 2.9 24 170-193 167-190 (611)
398 1g8f_A Sulfate adenylyltransfe 95.4 0.025 8.6E-07 57.4 7.4 41 168-208 393-435 (511)
399 1cp2_A CP2, nitrogenase iron p 95.4 0.014 5E-07 53.2 5.2 40 171-210 2-41 (269)
400 1ltq_A Polynucleotide kinase; 95.4 0.0083 2.8E-07 55.8 3.6 23 171-193 3-25 (301)
401 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.019 6.3E-07 54.6 6.0 27 168-194 43-69 (322)
402 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0078 2.7E-07 51.5 3.1 22 172-193 9-30 (184)
403 4b4t_K 26S protease regulatory 95.4 0.0058 2E-07 60.7 2.5 54 140-195 178-231 (428)
404 2bme_A RAB4A, RAS-related prot 95.4 0.008 2.7E-07 51.1 3.1 24 171-194 11-34 (186)
405 2qby_B CDC6 homolog 3, cell di 95.4 0.045 1.5E-06 52.2 8.7 28 169-196 44-71 (384)
406 3foz_A TRNA delta(2)-isopenten 95.4 0.0099 3.4E-07 56.5 3.9 26 169-194 9-34 (316)
407 2efe_B Small GTP-binding prote 95.4 0.0084 2.9E-07 50.6 3.2 22 172-193 14-35 (181)
408 2bov_A RAla, RAS-related prote 95.4 0.0083 2.8E-07 51.9 3.2 23 171-193 15-37 (206)
409 2h92_A Cytidylate kinase; ross 95.4 0.0081 2.8E-07 53.1 3.1 25 170-194 3-27 (219)
410 2ocp_A DGK, deoxyguanosine kin 95.3 0.01 3.4E-07 53.6 3.7 27 169-195 1-27 (241)
411 3lxw_A GTPase IMAP family memb 95.3 0.0087 3E-07 54.6 3.3 24 171-194 22-45 (247)
412 3n70_A Transport activator; si 95.3 0.013 4.5E-07 48.7 4.1 33 171-203 25-57 (145)
413 3t15_A Ribulose bisphosphate c 95.3 0.023 7.8E-07 53.1 6.3 27 168-194 34-60 (293)
414 2cjw_A GTP-binding protein GEM 95.3 0.0088 3E-07 51.9 3.2 22 172-193 8-29 (192)
415 2gf9_A RAS-related protein RAB 95.3 0.0091 3.1E-07 51.2 3.2 23 172-194 24-46 (189)
416 2fg5_A RAB-22B, RAS-related pr 95.3 0.0089 3E-07 51.6 3.1 23 172-194 25-47 (192)
417 1vg8_A RAS-related protein RAB 95.3 0.009 3.1E-07 51.8 3.1 24 171-194 9-32 (207)
418 3bwd_D RAC-like GTP-binding pr 95.3 0.011 3.9E-07 49.8 3.7 24 170-193 8-31 (182)
419 2gf0_A GTP-binding protein DI- 95.3 0.0091 3.1E-07 51.3 3.1 23 171-193 9-31 (199)
420 1jal_A YCHF protein; nucleotid 95.3 0.011 3.7E-07 57.5 3.9 23 170-192 2-24 (363)
421 3kkq_A RAS-related protein M-R 95.3 0.01 3.5E-07 50.3 3.4 23 171-193 19-41 (183)
422 2r8r_A Sensor protein; KDPD, P 95.3 0.021 7.3E-07 51.7 5.6 40 169-208 4-44 (228)
423 2axn_A 6-phosphofructo-2-kinas 95.3 0.013 4.5E-07 59.6 4.7 42 168-209 33-74 (520)
424 3tmk_A Thymidylate kinase; pho 95.3 0.011 3.7E-07 53.2 3.6 28 169-196 4-31 (216)
425 4b4t_M 26S protease regulatory 95.3 0.007 2.4E-07 60.2 2.6 53 141-195 188-240 (434)
426 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.0097 3.3E-07 50.3 3.2 22 172-193 7-28 (186)
427 2fv8_A H6, RHO-related GTP-bin 95.3 0.0088 3E-07 52.3 2.9 32 162-193 17-48 (207)
428 2xtp_A GTPase IMAP family memb 95.2 0.0094 3.2E-07 54.3 3.2 24 170-193 22-45 (260)
429 1ypw_A Transitional endoplasmi 95.2 0.0048 1.7E-07 66.1 1.5 43 163-207 504-546 (806)
430 3tkl_A RAS-related protein RAB 95.2 0.0098 3.4E-07 51.0 3.2 23 172-194 18-40 (196)
431 3cbq_A GTP-binding protein REM 95.2 0.0068 2.3E-07 52.8 2.1 23 171-193 24-46 (195)
432 1ko7_A HPR kinase/phosphatase; 95.2 0.017 6E-07 54.9 5.0 50 142-192 117-166 (314)
433 3dz8_A RAS-related protein RAB 95.2 0.01 3.5E-07 51.0 3.1 23 172-194 25-47 (191)
434 3t5g_A GTP-binding protein RHE 95.2 0.012 4E-07 49.9 3.4 21 172-192 8-28 (181)
435 3iby_A Ferrous iron transport 95.2 0.01 3.6E-07 54.5 3.3 23 172-194 3-25 (256)
436 3oes_A GTPase rhebl1; small GT 95.2 0.011 3.6E-07 51.5 3.1 25 170-194 24-48 (201)
437 2bcg_Y Protein YP2, GTP-bindin 95.2 0.011 3.6E-07 51.5 3.1 22 172-193 10-31 (206)
438 3syl_A Protein CBBX; photosynt 95.1 0.014 4.9E-07 54.2 4.2 28 169-196 66-93 (309)
439 2a5j_A RAS-related protein RAB 95.1 0.011 3.7E-07 50.8 3.2 22 172-193 23-44 (191)
440 4b4t_L 26S protease subunit RP 95.1 0.0079 2.7E-07 59.9 2.5 29 167-195 212-240 (437)
441 1ksh_A ARF-like protein 2; sma 95.1 0.012 4.2E-07 50.0 3.4 26 169-194 17-42 (186)
442 2ew1_A RAS-related protein RAB 95.1 0.011 3.7E-07 51.9 3.1 22 172-193 28-49 (201)
443 1z06_A RAS-related protein RAB 95.1 0.011 3.8E-07 50.6 3.1 23 171-193 21-43 (189)
444 1x3s_A RAS-related protein RAB 95.1 0.011 3.9E-07 50.4 3.2 24 171-194 16-39 (195)
445 1zbd_A Rabphilin-3A; G protein 95.1 0.011 3.8E-07 51.2 3.1 23 172-194 10-32 (203)
446 3fkq_A NTRC-like two-domain pr 95.1 0.056 1.9E-06 52.3 8.4 43 165-207 138-181 (373)
447 1zd9_A ADP-ribosylation factor 95.1 0.012 4E-07 50.6 3.2 24 170-193 22-45 (188)
448 3reg_A RHO-like small GTPase; 95.1 0.012 4.1E-07 50.7 3.2 24 171-194 24-47 (194)
449 3io5_A Recombination and repai 95.1 0.02 6.8E-07 54.7 4.9 39 167-206 26-66 (333)
450 2p5s_A RAS and EF-hand domain 95.1 0.014 4.8E-07 50.5 3.7 25 169-193 27-51 (199)
451 2iut_A DNA translocase FTSK; n 95.0 0.54 1.9E-05 48.1 15.9 42 162-203 206-251 (574)
452 3uk6_A RUVB-like 2; hexameric 95.0 0.022 7.4E-07 54.4 5.2 39 169-207 69-107 (368)
453 1x6v_B Bifunctional 3'-phospho 95.0 0.015 5.3E-07 60.3 4.4 40 169-208 51-90 (630)
454 2gks_A Bifunctional SAT/APS ki 95.0 0.016 5.3E-07 59.4 4.4 41 169-209 371-411 (546)
455 2o52_A RAS-related protein RAB 95.0 0.011 3.8E-07 51.4 2.8 22 172-193 27-48 (200)
456 3hjn_A DTMP kinase, thymidylat 95.0 0.037 1.3E-06 48.8 6.2 34 172-205 2-35 (197)
457 3iev_A GTP-binding protein ERA 95.0 0.01 3.6E-07 56.0 2.8 25 169-193 9-33 (308)
458 2iwr_A Centaurin gamma 1; ANK 95.0 0.011 3.6E-07 50.0 2.6 23 171-193 8-30 (178)
459 1gwn_A RHO-related GTP-binding 95.0 0.012 4.2E-07 51.6 3.1 24 171-194 29-52 (205)
460 3cph_A RAS-related protein SEC 95.0 0.013 4.4E-07 51.0 3.2 24 170-193 20-43 (213)
461 1p5z_B DCK, deoxycytidine kina 95.0 0.0089 3E-07 54.8 2.2 28 168-195 22-49 (263)
462 3eph_A TRNA isopentenyltransfe 95.0 0.014 4.9E-07 57.3 3.8 26 170-195 2-27 (409)
463 3bfv_A CAPA1, CAPB2, membrane 95.0 0.029 9.9E-07 51.9 5.7 42 169-210 81-123 (271)
464 2il1_A RAB12; G-protein, GDP, 95.0 0.01 3.4E-07 51.3 2.4 22 172-193 28-49 (192)
465 3c5c_A RAS-like protein 12; GD 95.0 0.013 4.5E-07 50.3 3.1 23 171-193 22-44 (187)
466 2h17_A ADP-ribosylation factor 94.9 0.012 4.1E-07 50.1 2.9 24 170-193 21-44 (181)
467 2atv_A RERG, RAS-like estrogen 94.9 0.017 5.8E-07 49.8 3.8 24 170-193 28-51 (196)
468 3a1s_A Iron(II) transport prot 94.9 0.013 4.5E-07 53.8 3.3 23 172-194 7-29 (258)
469 1zj6_A ADP-ribosylation factor 94.9 0.017 5.7E-07 49.4 3.7 23 170-192 16-38 (187)
470 2qu8_A Putative nucleolar GTP- 94.9 0.013 4.3E-07 52.3 3.0 24 170-193 29-52 (228)
471 2h57_A ADP-ribosylation factor 94.9 0.0094 3.2E-07 51.1 2.1 25 170-194 21-45 (190)
472 2fh5_B SR-beta, signal recogni 94.9 0.015 5.1E-07 50.9 3.4 24 171-194 8-31 (214)
473 3llu_A RAS-related GTP-binding 94.9 0.012 4.2E-07 50.9 2.8 25 171-195 21-45 (196)
474 4dhe_A Probable GTP-binding pr 94.9 0.0074 2.5E-07 53.1 1.4 25 170-194 29-53 (223)
475 1wf3_A GTP-binding protein; GT 94.9 0.014 4.7E-07 55.1 3.3 22 172-193 9-30 (301)
476 4b4t_I 26S protease regulatory 94.8 0.013 4.4E-07 58.1 3.1 54 140-195 188-241 (437)
477 3eie_A Vacuolar protein sortin 94.8 0.029 1E-06 53.0 5.4 26 169-194 50-75 (322)
478 1tue_A Replication protein E1; 94.8 0.018 6.1E-07 51.6 3.6 26 169-194 57-82 (212)
479 2r62_A Cell division protease 94.8 0.0066 2.3E-07 55.5 0.8 22 173-194 47-68 (268)
480 4bas_A ADP-ribosylation factor 94.8 0.013 4.4E-07 50.4 2.7 26 169-194 16-41 (199)
481 2j1l_A RHO-related GTP-binding 94.8 0.013 4.6E-07 51.5 2.8 23 171-193 35-57 (214)
482 4b4t_J 26S protease regulatory 94.8 0.011 3.8E-07 58.1 2.4 27 169-195 181-207 (405)
483 2q3h_A RAS homolog gene family 94.8 0.014 4.8E-07 50.4 2.9 25 169-193 19-43 (201)
484 3t5d_A Septin-7; GTP-binding p 94.8 0.011 3.9E-07 54.5 2.4 22 172-193 10-31 (274)
485 2dby_A GTP-binding protein; GD 94.8 0.014 4.8E-07 56.8 3.1 23 172-194 3-25 (368)
486 1m8p_A Sulfate adenylyltransfe 94.8 0.019 6.6E-07 59.0 4.3 42 168-209 394-436 (573)
487 3ea0_A ATPase, para family; al 94.8 0.034 1.2E-06 49.7 5.5 41 169-209 3-45 (245)
488 2bjv_A PSP operon transcriptio 94.7 0.027 9.1E-07 51.4 4.8 36 171-206 30-65 (265)
489 2chg_A Replication factor C sm 94.7 0.017 5.8E-07 50.0 3.3 23 173-195 41-63 (226)
490 4b4t_H 26S protease regulatory 94.7 0.0086 3E-07 59.9 1.5 29 167-195 240-268 (467)
491 2aka_B Dynamin-1; fusion prote 94.7 0.038 1.3E-06 51.0 5.8 23 172-194 28-50 (299)
492 2atx_A Small GTP binding prote 94.7 0.016 5.6E-07 49.7 3.1 22 172-193 20-41 (194)
493 3k9g_A PF-32 protein; ssgcid, 94.7 0.029 9.9E-07 51.2 4.9 43 167-210 24-67 (267)
494 3i8s_A Ferrous iron transport 94.7 0.016 5.6E-07 53.6 3.2 24 171-194 4-27 (274)
495 2f7s_A C25KG, RAS-related prot 94.7 0.015 5.2E-07 50.9 2.9 22 172-193 27-48 (217)
496 2gco_A H9, RHO-related GTP-bin 94.7 0.017 5.7E-07 50.2 3.1 22 172-193 27-48 (201)
497 1jwy_B Dynamin A GTPase domain 94.7 0.016 5.4E-07 54.2 3.2 23 172-194 26-48 (315)
498 4dzz_A Plasmid partitioning pr 94.7 0.03 1E-06 48.5 4.8 83 171-265 2-87 (206)
499 3cnl_A YLQF, putative uncharac 94.6 0.016 5.6E-07 53.5 3.1 25 171-195 100-124 (262)
500 3la6_A Tyrosine-protein kinase 94.6 0.042 1.4E-06 51.3 5.9 42 169-210 91-133 (286)
No 1
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-50 Score=397.46 Aligned_cols=322 Identities=85% Similarity=1.302 Sum_probs=271.7
Q ss_pred CCcchhHHHHHHHhhhhhhHHHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 017380 50 GQTGFFTRLGRLIKEKAKSDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRD 129 (372)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~ 129 (372)
+.-+|+.++.....+...++|++++++|+++++++..+.+++......++++.+++|++.|+++||+++++.+|++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~ 116 (359)
T 2og2_A 37 GPSGFFTRLGRLIKEKAKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLRE 116 (359)
T ss_dssp ------------------CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34488877777555566689999999999999998877777654443445899999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 130 DILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
+....+..+.++++.++.+.|.+.++......+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|++
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 117 DIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp HHHTTSCCSHHHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 98887777888899999999999998653235789999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHhhCcceeEecccc-ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhC
Q 017380 210 RAAASDQLEIWAERTGCEIVVAEGEK-AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNG 288 (372)
Q Consensus 210 r~~a~eql~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~ 288 (372)
|.++.+|+..|+.+.++++ +.+... .++...+++.+..+.....+.+++|++|+.+..++++.+||....+|||+++.
T Consensus 197 r~~a~eql~~~~~r~~i~~-v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~ 275 (359)
T 2og2_A 197 RAAASDQLEIWAERTGCEI-VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSG 275 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEE-ECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHhcCeEE-EEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888888 677666 77877888877655444556667899999999999999999443399999999
Q ss_pred CCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHH
Q 017380 289 APNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVN 368 (372)
Q Consensus 289 ~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~ 368 (372)
+|++++||||.|+|+|+..+.+.|.+..++++|++|++|++.+||.++.+.+..+.||.|+++||.++||++|+|++|++
T Consensus 276 ~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~ 355 (359)
T 2og2_A 276 APNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVN 355 (359)
T ss_dssp CCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHH
T ss_pred CCCceEEEEcCCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHH
Confidence 99999999999999999999988887789999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 017380 369 AIFS 372 (372)
Q Consensus 369 ~l~~ 372 (372)
+||+
T Consensus 356 ~ll~ 359 (359)
T 2og2_A 356 AIFS 359 (359)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9985
No 2
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-49 Score=381.40 Aligned_cols=300 Identities=85% Similarity=1.299 Sum_probs=265.2
Q ss_pred HHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 017380 72 KIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVL 151 (372)
Q Consensus 72 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 151 (372)
+++++|++++++|+.+++++.....-++++.+++|++.|+++||+++++.+|++++++.....+..++++++.++.+.|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T 3b9q_A 2 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVL 81 (302)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 68899999999988777777644433458999999999999999999999999999999887777778889999999999
Q ss_pred HHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEe
Q 017380 152 DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231 (372)
Q Consensus 152 ~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~ 231 (372)
+.|+......+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|++|.++.+|++.|+.+.++++ +.
T Consensus 82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~-v~ 160 (302)
T 3b9q_A 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VV 160 (302)
T ss_dssp HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE-EC
T ss_pred HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceE-EE
Confidence 99987654467899999999999999999999999999999999999999999999999999999999998888888 67
Q ss_pred cccc-ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHH
Q 017380 232 EGEK-AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAR 310 (372)
Q Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~ 310 (372)
+... .++...+++.+..+.....+..++|++|+.+..++++.+||....+|||+++.+|++++||||.|+|+|+..+.+
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~ 240 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 240 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHH
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHH
Confidence 7666 777777787776544444555677999999999999999994333999999999999999999999999999988
Q ss_pred HHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 311 EFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 311 ~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.|.+..+++++++|++|++.++|.++.+.+..+.|+.|+++||.++|+++|+|++|+++||+
T Consensus 241 ~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 241 EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 88877899999999999999999999999999999999999999999999999999999985
No 3
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=3.5e-47 Score=384.11 Aligned_cols=301 Identities=39% Similarity=0.666 Sum_probs=268.6
Q ss_pred hhhHHHHHHhhHHHHHHhHH-HHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHH
Q 017380 66 AKSDVEKIFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKD 144 (372)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 144 (372)
..+||++|+++|++++++|+ .+..+|... ...++.+++|++.|+++||+.+++.+|++++++......+.+.+.++.
T Consensus 192 ~~~~~~~l~~~l~kt~~~l~~~l~~~~~~~--~ide~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 269 (503)
T 2yhs_A 192 KEGFFARLKRSLLKTKENLGSGFISLFRGK--KIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYG 269 (503)
T ss_dssp HHHHHHHHHHHTHHHHTTSTTHHHHHHTTC--BCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 45889999999999999986 577777542 233789999999999999999999999999999887766777788999
Q ss_pred HHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 145 ALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++++.|.+.|+.. .+++||++.+|++++|+||||||||||+++|+|++++++|+|.+.+.|++|.++.+|+..|+.+.
T Consensus 270 ~l~~~l~~~l~~~--~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~ 347 (503)
T 2yhs_A 270 LLKEEMGEILAKV--DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 347 (503)
T ss_dssp HHHHHHHHHHHTT--BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhc
Confidence 9999999999864 46899999999999999999999999999999999999999999999999998889999998888
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHH-HhCCCCceEEEEcCCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV-VNGAPNEILLVLDGTTGL 303 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAra-l~~~P~~~lLvLDEtsgl 303 (372)
++++ +.+....++...+++.+.....+++|.+++||+|+.+....++.+|+...+. +++ ....|++++|++|.++|+
T Consensus 348 ~I~v-V~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~i-ar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 348 NIPV-IAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRV-MKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp TCCE-ECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHH-HHTTCTTCSSEEEEEEEGGGTH
T ss_pred CceE-EecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHH-HHHhccCCCCeeEEEecCcccH
Confidence 8888 6776667777888888877767788999999999999999999999966544 443 356799999999999999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
|...+.+.|++.++++++|+||+|++.+||.++.+.+.+++||.|+++||.++||.+|++++|+++||+
T Consensus 426 ~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg 494 (503)
T 2yhs_A 426 NAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 494 (503)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhc
Confidence 999999999988999999999999999999999999999999999999999999999999999999985
No 4
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=8e-46 Score=356.46 Aligned_cols=292 Identities=42% Similarity=0.684 Sum_probs=233.5
Q ss_pred hHHHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017380 68 SDVEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147 (372)
Q Consensus 68 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 147 (372)
++|++|+++|+++++++..-.. + .. ++++.+++|++.|+++||+++++.+|+++++++.. +.+..++.
T Consensus 2 ~~~~~l~~~l~~~~~~~~~~~~-~---~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-------~~~~~~~~ 69 (304)
T 1rj9_A 2 GFFDRLKAGLAKTRERLLKAIP-W---GG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-------KDLKEAVK 69 (304)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------SSTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcccc-c---ch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4567788889999888763111 1 22 45899999999999999999999999999987543 45677888
Q ss_pred HHHHHHhccCCCCC---ccceec-------cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHH
Q 017380 148 NSVLDLLTKKGNKT---ELQLGY-------RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 217 (372)
Q Consensus 148 ~~l~~~~~~~~~~~---~isl~i-------~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql 217 (372)
+.|.+.++.....+ ++++.- .+|++++|+||||||||||+++|+|+++|++|+|.+.+.|++|.++.+|+
T Consensus 70 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql 149 (304)
T 1rj9_A 70 EKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQL 149 (304)
T ss_dssp HHHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHH
T ss_pred HHHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHH
Confidence 88888887532100 233321 26899999999999999999999999999999999999999999989999
Q ss_pred HHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEE
Q 017380 218 EIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVL 297 (372)
Q Consensus 218 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvL 297 (372)
..|+.+.++++ +.+....+|...+++.+..+...+.+.+++|++|+.+...+++.+||+..+++||+++.+|++++|+|
T Consensus 150 ~~~~~~~~i~~-v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvL 228 (304)
T 1rj9_A 150 SEWGKRLSIPV-IQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVL 228 (304)
T ss_dssp HHHHHHHTCCE-ECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEE
T ss_pred HHHHHhcCceE-EEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 99988888888 77777778877778777665555566677899999999999999999765699999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 298 DGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 298 DEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
|.+++.+...+...|.+..+++++++|++|++++||+++.+.|++++|+.|+++||+++||++|+|++|+++||+
T Consensus 229 Da~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 229 DAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp ETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 999999999998888878899999999999999999999999999999999999999999999999999999985
No 5
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2.3e-44 Score=349.56 Aligned_cols=295 Identities=38% Similarity=0.605 Sum_probs=246.3
Q ss_pred hHHHHHHhhHHHHHHhHHH-HH---------HHHhh-----hcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 017380 68 SDVEKIFSGFSKTRDNLAV-ID---------ELLLY-----WNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDIL 132 (372)
Q Consensus 68 ~~~~~~~~~l~~~~~~l~~-~~---------~~~~~-----~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~ 132 (372)
++|++|++.|++++++++. ++ .++.. ...+++++.+++|++.|+++||+++++.+|++.+++++.
T Consensus 6 ~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~ 85 (328)
T 3e70_C 6 SMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLV 85 (328)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 4555666666666665442 11 11211 234456789999999999999999999999999999887
Q ss_pred cCCC----CChhhHHHHHHHHHHHHhccCCCCCccce-----eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 133 AGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQL-----GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 133 ~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl-----~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
..++ ...+.+..++.+.|.+.|++.. ++++ ..++|++++|+||||||||||+++|+|+++|++|+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 86 GKKVRIGTDKGKIIEEAVKEAVSEILETSR---RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp TCEEECC---CHHHHHHHHHHHHHHSCCSS---CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcccCCccCHHHHHHHHHHHHHHHHhCCcc---ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 5433 3345678889999999998643 2332 34689999999999999999999999999999999999
Q ss_pred eeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHH
Q 017380 204 AAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVG 283 (372)
Q Consensus 204 ~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iA 283 (372)
.+.|++|.++.+|++.|+++.++++ +.+....+|...+++++..+.....+.+++|++|+.+....++.+|++. +
T Consensus 163 ~g~D~~r~~a~eql~~~~~~~gv~~-v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i----~ 237 (328)
T 3e70_C 163 AASDTFRAGAIEQLEEHAKRIGVKV-IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKI----A 237 (328)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEE-ECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHH----H
T ss_pred EeecccccchHHHHHHHHHHcCceE-EeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHH----H
Confidence 9999999999999999999999988 7777788888888888876666667777889999999999999999974 4
Q ss_pred HHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCH
Q 017380 284 KVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDA 363 (372)
Q Consensus 284 ral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~ 363 (372)
+++ .|++.+++||+++++|...+.+.|.+.++++++|+||+|+++++|.++.+.+..+.|+.|+++||.|+||++|+|
T Consensus 238 ral--~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~ 315 (328)
T 3e70_C 238 RVT--KPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEK 315 (328)
T ss_dssp HHH--CCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCH
T ss_pred HHh--cCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCH
Confidence 444 477779999998899999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 017380 364 EAFVNAIFS 372 (372)
Q Consensus 364 ~~~v~~l~~ 372 (372)
++|+++|++
T Consensus 316 ~~~~~~llg 324 (328)
T 3e70_C 316 EWFLERIFG 324 (328)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999999985
No 6
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=1.8e-43 Score=340.20 Aligned_cols=290 Identities=44% Similarity=0.687 Sum_probs=253.3
Q ss_pred HHHHHHhhHHHHHHhHH-HHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017380 69 DVEKIFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALK 147 (372)
Q Consensus 69 ~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 147 (372)
.|++++++|++++++|+ .+.+++... ...++.+++|++.|+++||+++++.+|++++++ .+++ ++.++.
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~-------~~~~-~~~~~~ 84 (306)
T 1vma_A 15 LFDFLKKGLQKTKETFFGRVVKLLKGK--KLDDETREELEELLIQADVGVETTEYILERLEE-------KDGD-ALESLK 84 (306)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHTTC--CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT-------CCSC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------cCHH-HHHHHH
Confidence 44567789999999986 577777533 233789999999999999999999999999876 2234 889999
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.|.+.++... ++++...+|++++|+|||||||||++++||+++++++|+|.+.+.|++|.++.+|+..|.++.+++
T Consensus 85 ~~l~~~l~~~~---~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 85 EIILEILNFDT---KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp HHHHHHTCSCC---CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhCCCC---CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCc
Confidence 99999998543 566777889999999999999999999999999999999999999999999999999999999998
Q ss_pred eeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHH
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLP 307 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~ 307 (372)
+ +......++..+.++.+..+...++|.+++|++|+.+.....+.+|+...+.+++++...|++++|++|.+++.+...
T Consensus 162 ~-~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~ 240 (306)
T 1vma_A 162 V-ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLV 240 (306)
T ss_dssp E-ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHH
T ss_pred E-EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHH
Confidence 7 555556667666666666656677889999999998888899999998877887777888999999999988888888
Q ss_pred HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 308 ~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
+.+.|.+.++++|+|+||+|++.+||.++.+.+.+++|+.|+++||.++||++|+|++|+++||+
T Consensus 241 ~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 241 QAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp HHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred HHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 88888878999999999999999999999999999999999999999999999999999999985
No 7
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.3e-40 Score=322.35 Aligned_cols=296 Identities=37% Similarity=0.590 Sum_probs=253.4
Q ss_pred HHhhHHHHHHhHH-HHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 017380 73 IFSGFSKTRDNLA-VIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVL 151 (372)
Q Consensus 73 ~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 151 (372)
+.++|++++++|+ .+.+++.... ...++.+++|++.|+++||+++++.+|+++++++....+..+. ++.++.+.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ 83 (320)
T 1zu4_A 7 MEKAMLKSAFNFSKDIKKLSKKYK-QADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN--IKDALVESLY 83 (320)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTCC-CCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH--HHHHHHHHHH
Confidence 5678999999986 5777776433 2237899999999999999999999999999988765544333 7889999999
Q ss_pred HHhccCCC---CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHH---hhC
Q 017380 152 DLLTKKGN---KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAE---RTG 225 (372)
Q Consensus 152 ~~~~~~~~---~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~---~~~ 225 (372)
+.++.... +.+++|+..+|++++|+|+||+||||++.+||+.+.+.+|+|.+.+.|++|.++.+|+..|.+ +.+
T Consensus 84 ~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~ 163 (320)
T 1zu4_A 84 QAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNK 163 (320)
T ss_dssp HHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTT
T ss_pred HHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCC
Confidence 99986431 157899999999999999999999999999999999999999999999999998899998987 677
Q ss_pred cceeE-eccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC
Q 017380 226 CEIVV-AEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304 (372)
Q Consensus 226 v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD 304 (372)
+++ + .+....++...+++.+.....+++|.+++||+|+.+..+..+.+|....+.+.+.....|+++++++|.+++.+
T Consensus 164 l~v-ip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~ 242 (320)
T 1zu4_A 164 VDL-VKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQN 242 (320)
T ss_dssp EEE-ECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHH
T ss_pred ceE-EeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHH
Confidence 777 4 55555667666677776655678999999999999988888999988877666555677999999999977788
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
...+.+.|.+.++++|+|+||+|++.++|.++.+.+.+++|+.|+++||.++||++|+|++|+++||+
T Consensus 243 ~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 243 GVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp HHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred HHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 88888888878999999999999988899999999999999999999999999999999999999984
No 8
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-37 Score=310.74 Aligned_cols=266 Identities=31% Similarity=0.563 Sum_probs=233.2
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCccceeccCCeE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAV 172 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~v 172 (372)
+++++.+++|++.|+++||+.+++.++++.+++.....+. .+.+.+..++.+.|...++.... .+.+. .++.+
T Consensus 26 ~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L~~~~~--~~~~~-~~p~v 102 (443)
T 3dm5_A 26 ALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAK--PIEIK-EKPTI 102 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTSSCC--CCCCC-SSSEE
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhcCccc--ccccC-CCCeE
Confidence 4457899999999999999999999999999998875543 34567888999999999886322 23332 25789
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (372)
++++|++|+||||++.+||.++...+.+|.+.++|++|+++.+|++.|+...++++ +......++..++.+++..+...
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-~~~~~~~dp~~i~~~al~~a~~~ 181 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-FGNPQEKDAIKLAKEGVDYFKSK 181 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-ECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888999999999999999999999999999998 55555667888888888777667
Q ss_pred chHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccc
Q 017380 253 GFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARG 332 (372)
Q Consensus 253 ~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~g 332 (372)
++|.+++||+|+.+.....+.+|....+.+ .|++++||+|.++|+|...+++.|.+.++++|||+||+|+++++
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~------~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVI------HPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSSH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhh------cCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCcccc
Confidence 799999999999998888888887765543 79999999999779999999999998999999999999999999
Q ss_pred eeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 333 GCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 333 g~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
|.++.+.+..+.|+.|+++||.++||++|+|++|+++||+
T Consensus 256 G~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg 295 (443)
T 3dm5_A 256 GGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG 295 (443)
T ss_dssp HHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT
T ss_pred cHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999985
No 9
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=4.9e-37 Score=306.94 Aligned_cols=287 Identities=32% Similarity=0.495 Sum_probs=238.4
Q ss_pred HHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHH
Q 017380 71 EKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDAL 146 (372)
Q Consensus 71 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l 146 (372)
+.|.+.|+++.+++..- .....+++++.+++++..|+++||+.+++.++++.+++.....++ .+.+.+..++
T Consensus 3 ~~l~~~l~~~~~~l~~~----~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v 78 (425)
T 2ffh_A 3 QQLSARLQEAIGRLRGR----GRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATV 78 (425)
T ss_dssp HHHHHHHHHHHHTTTTC----CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHH
Confidence 45555665555544210 001223457899999999999999999999999999988776543 4556788999
Q ss_pred HHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 147 KNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 147 ~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.++|.+.|+... .+++|+ +|++++++|+||+||||++.+|++++.+.+++|.+.+.|++|.++.+|++.|+...++
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 999999998643 567887 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHH
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNML 306 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~ 306 (372)
++ +......+|..++.+.+......++|.+++||+|+.+.....+.+|....+.+ .|++++||+|.++++|..
T Consensus 155 ~v-~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~------~pd~vlLVvDa~tgq~av 227 (425)
T 2ffh_A 155 PV-LEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227 (425)
T ss_dssp CE-EECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH------CCSEEEEEEEGGGTTHHH
T ss_pred cE-EecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc------CCceEEEEEeccchHHHH
Confidence 88 45444456666656666655456789999999999988777777776554433 788899999997789999
Q ss_pred HHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 307 PQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 307 ~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.+.+.|+..++++|+|+||+|++.+++.++.+.+..+.|+.|++.||.++||++|+|+.|+++|++
T Consensus 228 ~~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp HHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHT
T ss_pred HHHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhc
Confidence 988888878999999999999988899999999999999999999999999999999999999874
No 10
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=8.6e-37 Score=305.60 Aligned_cols=267 Identities=28% Similarity=0.505 Sum_probs=230.9
Q ss_pred cCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCccceeccCCeE
Q 017380 97 ADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAV 172 (372)
Q Consensus 97 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~v 172 (372)
+++++.+++|++.|+++||+.+++.++++++++.....+. .+.+.+..++.+.|...++.... ..+... .+|.+
T Consensus 22 ~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~-~~~~~~-~~~~v 99 (433)
T 3kl4_A 22 KAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKE-PNVNPT-KLPFI 99 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSC-CCCSCC-SSSEE
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCcccc-cccccc-CCCeE
Confidence 4568899999999999999999999999999998876443 34567788899999998885321 112222 35899
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (372)
++++|||||||||++.+|++++.+.+++|.+.++|++|.++.+|+..|+...++++ .......++.......+..+...
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-~~~~~~~dp~~i~~~al~~a~~~ 178 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-YGEPNNQNPIEIAKKGVDIFVKN 178 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-ECCTTCSCHHHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-eeccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988 45555567777777777776667
Q ss_pred chHHHHHHhhCCCc--cchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 253 GFDIVLCDTSGRLH--TNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 253 ~~d~vl~dt~G~~~--~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
++|.+++||+|+.+ .+...+.++....+.+ +|++++||+|.++|.|...+++.|++.++++|||+||+|+++
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~------~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL------KPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhh------CCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccc
Confidence 88999999999988 7777888877765543 789999999997799999999999989999999999999999
Q ss_pred cceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 331 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 331 ~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
++|.++.+.+..+.|+.|+++||.++||++|+|++|+++|||
T Consensus 253 ~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg 294 (433)
T 3kl4_A 253 KGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG 294 (433)
T ss_dssp CHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC
T ss_pred cchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999875
No 11
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=3.4e-36 Score=288.52 Aligned_cols=265 Identities=27% Similarity=0.497 Sum_probs=227.5
Q ss_pred CcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCc-cceeccCCeE
Q 017380 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTE-LQLGYRKPAV 172 (372)
Q Consensus 98 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~-isl~i~~g~v 172 (372)
++++.++++++.|+++||+++++.+|++.+++.....+. .+.+.+...+.++|.+.|+... .+ ++++.+ |++
T Consensus 24 ~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~-~~v 100 (297)
T 1j8m_F 24 AVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDK--EPKVIPDKI-PYV 100 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSC--CCCCSCSSS-SEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhcccc--ccccccCCC-CeE
Confidence 346899999999999999999999999999998766543 3456678889999999998643 46 788766 999
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (372)
++++|+||+||||++.+|++.+.+.+++|.+.+.|++|.++.+|++.|+.+.++++ +......++...+.+.+......
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v-~~~~~~~~p~~~~~~~l~~~~~~ 179 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV-YGEPGEKDVVGIAKRGVEKFLSE 179 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE-ECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEE-EecCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999988 44444456666666666665556
Q ss_pred chHHHHHHhhCCCc--cchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 253 GFDIVLCDTSGRLH--TNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 253 ~~d~vl~dt~G~~~--~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
++|.+++||+|+.+ ..+..+.+|......+ .|+++++|+|.+++.+...+.+.+++.++++|+|++|+|.+.
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI------KPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHh------cCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCCCCc
Confidence 78999999999998 6666777777654333 688999999996688988888888877899999999999888
Q ss_pred cceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 331 RGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 331 ~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
+++.++.+.+.++.|+.|+++||.++||++|+|++|+++||+
T Consensus 254 ~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~ 295 (297)
T 1j8m_F 254 KGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHH 295 (297)
T ss_dssp THHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCT
T ss_pred chHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 888899999999999999999999999999999999999985
No 12
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=2.5e-35 Score=282.33 Aligned_cols=288 Identities=32% Similarity=0.491 Sum_probs=227.9
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHhhhcccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHH
Q 017380 70 VEKIFSGFSKTRDNLAVIDELLLYWNLADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDA 145 (372)
Q Consensus 70 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~ 145 (372)
|++|+++|+++.+++..- .....+++.+.+++++..|+.+|++..++.++++++.....+... .+.+++..+
T Consensus 2 ~~~l~~~~~~~~~~~~~~----~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~ 77 (295)
T 1ls1_A 2 FQQLSARLQEAIGRLRGR----GRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT 77 (295)
T ss_dssp CHHHHHHHHHHHHTTTTS----CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH
Confidence 355666666665553210 001223346889999999999999999999999999876655443 223677888
Q ss_pred HHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 146 LKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 146 l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
..+++.+.|+... ++++|+ +|++++++|+||+||||++++|++++.+.+|+|.+.+.|++|.++.+|+..+.+..+
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~ 153 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVG 153 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCC
Confidence 8999999997542 578887 899999999999999999999999999999999999999999998889988888888
Q ss_pred cceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNM 305 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~ 305 (372)
+++ +.......|.......+......++|.+++|++|..+.+...+.++....+.+ .|+++++++|.+++.|.
T Consensus 154 l~~-~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~------~~~~~~lv~~~~~~~~~ 226 (295)
T 1ls1_A 154 VPV-LEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEA 226 (295)
T ss_dssp CCE-EECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH------CCSEEEEEEEGGGTHHH
T ss_pred eEE-EEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc------CCCEEEEEEeCCCcHHH
Confidence 887 44333445555555566555446789999999999888767777776665543 68888999999667888
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
..+.+.++..+++.|+|++++|++.+++.++.+.+..++|+.|+++||.++||++|+|++|+++||+
T Consensus 227 ~~~~~~~~~~~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~ 293 (295)
T 1ls1_A 227 LSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (295)
T ss_dssp HHHHHHHHHHTCCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhc
Confidence 8888888877999999999999988899999999999999999999999999999999999999985
No 13
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.97 E-value=3.3e-32 Score=273.28 Aligned_cols=266 Identities=33% Similarity=0.588 Sum_probs=223.9
Q ss_pred CcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEE
Q 017380 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVV 173 (372)
Q Consensus 98 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi 173 (372)
++++.+++|+..|+++||+++++.+|++.+++.....++ .+.+.+..++.+.+.+.++... .++++.-.++.++
T Consensus 26 ~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~vI 103 (433)
T 2xxa_A 26 NVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN--QTLNLAAQPPAVV 103 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSS--CCCCCCSSSSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhcccc--ccccccCCCCeEE
Confidence 456899999999999999999999999999998766443 3456788899999999998542 2345544567899
Q ss_pred EEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhh
Q 017380 174 LIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQ 252 (372)
Q Consensus 174 ~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (372)
+++|++|+||||+..+||..+... +.+|.+.+.|++|.++.+|+..|+...++++ +......++...+.+.+......
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v-~~~~~~~dp~~i~~~~l~~~~~~ 182 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF-FPSDVGQKPVDIVNAALKEAKLK 182 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE-CCCCSSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeE-EeCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999887 8899999999999999999999999999988 44444456666656666655446
Q ss_pred chHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccc
Q 017380 253 GFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARG 332 (372)
Q Consensus 253 ~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~g 332 (372)
++|.+++||+|+.+.....+.+|..... +..|+++++|+|.++|+|...+.+.|+..++++|+|++|+|++.++
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~------~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHA------SINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHH------HSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHH------hhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCCCCccH
Confidence 7899999999998877667766655433 2378999999999778999998888887899999999999988888
Q ss_pred eeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 333 GCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 333 g~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
+.++.+.+..+.|+.|++.||.++|+.+|+|+.+++++++
T Consensus 257 g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g 296 (433)
T 2xxa_A 257 GAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILG 296 (433)
T ss_dssp THHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhC
Confidence 8889999999999999999999999999999999998864
No 14
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.97 E-value=5.4e-32 Score=259.26 Aligned_cols=256 Identities=27% Similarity=0.343 Sum_probs=202.5
Q ss_pred CcHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEE
Q 017380 98 DTDKVLDELEEALLVSDFGPRITIKIVESL-RDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIV 176 (372)
Q Consensus 98 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lv 176 (372)
+.++.++++++.|+++||+.+++.+|++.+ ++.+..... +++.+..++.+.|.+.++... ++++ ..+|++++|+
T Consensus 37 ~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~---~~~~-~~~g~vi~lv 111 (296)
T 2px0_A 37 VLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL-TEENVVGKLQEILCDMLPSAD---KWQE-PIHSKYIVLF 111 (296)
T ss_dssp --CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC-CTTTHHHHHHHHHHTTSCCGG---GSCC-CCCSSEEEEE
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHHHHhCCcc---cccc-cCCCcEEEEE
Confidence 457899999999999999999999999999 555544433 346788889999998886432 2233 2478999999
Q ss_pred cCCCCcHHHHHHHHHhhhhhcCC-eEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchH
Q 017380 177 GVNGGGKTTSLGKLAYRLKNEGA-KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFD 255 (372)
Q Consensus 177 GpNGsGKTTll~~Lag~l~~~~G-~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 255 (372)
||||+||||++++|++.+.++.| +|.+.+.|++|.++.+|+..|++..++++.... .+ ..+...+.. ..+.|
T Consensus 112 G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~----~~-~~l~~al~~--~~~~d 184 (296)
T 2px0_A 112 GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY----TK-EEFQQAKEL--FSEYD 184 (296)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS----SH-HHHHHHHHH--GGGSS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC----CH-HHHHHHHHH--hcCCC
Confidence 99999999999999999998545 999999999999999999999999888763221 12 223334433 25678
Q ss_pred HHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHH-HHHHhhhcCchhhHhhhcccccccee
Q 017380 256 IVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQ-AREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 256 ~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~-~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
.+++||+|+.+.....+.+|..... ...|+++++|+|.+.+++...+ .+.+. .++++++|+||+|++.+++.
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~------~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~ 257 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIP------FESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGS 257 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSC------CCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHH
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHh------hcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhH
Confidence 8999999998877666666654311 1247788999999777554443 34444 57899999999999888999
Q ss_pred eEeeeeccCCceeeeccCccc-CCCCCCCHHHHHHHhcC
Q 017380 335 VVSVVDELGIPVKFVGVGEGV-EDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 335 vi~isH~~~~pi~~i~~Ge~v-~Dl~~~~~~~~v~~l~~ 372 (372)
++.+.+..++|+.|+++||++ +|+++|++++|+++||+
T Consensus 258 ~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 258 VFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 999999999999999999999 99999999999999986
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=4.1e-31 Score=243.39 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=138.6
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHH-HHhhCcc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW-AERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~-~~~~~v~ 227 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... +...+ ...++
T Consensus 9 ~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~-- 85 (224)
T 2pcj_A 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK-ELSLLRNRKLG-- 85 (224)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH-HHHHHHHHHEE--
T ss_pred eEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH-HHHHHHhCcEE--
Confidence 345566655578999999999999999999999999999999999999999999987765432211 11111 12233
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +.+.+...+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||| +||||++.+|+ +
T Consensus 86 ~-v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~--l 161 (224)
T 2pcj_A 86 F-VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY-LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI--L 161 (224)
T ss_dssp E-ECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS--E
T ss_pred E-EecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHH-HHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC--E
Confidence 2 44443333222222222110 1122333 44788998888999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
|+||| |+|||+..+..+++ ++.++. ++|.+||++||+++.. +.++.+|+.+
T Consensus 162 llLDEPt~~LD~~~~~~~~~--------~l~~l~--~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMD--------IFLKIN--EGGTSIVMVTHERELAELTHRTLEMKDGKVV 218 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred EEEeCCCCCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988887 888885 3488999999998753 4456667655
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=2.7e-30 Score=239.58 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=140.8
Q ss_pred HHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 150 VLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 150 l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
|.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+..+.....++
T Consensus 7 l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 86 (235)
T 3tif_A 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG 86 (235)
T ss_dssp EEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE
T ss_pred EEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE
Confidence 3445653 236889999999999999999999999999999999999999999998877543322221111122233
Q ss_pred cceeEeccccccHHHHHHHHHHhh-------------hhhchHHHHHHhhCCCccc-hhhHhHHHHHHH---HHHHHHhC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG-------------KEQGFDIVLCDTSGRLHTN-YSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~d~vl~dt~G~~~~~-~~~~~eLS~G~r---~iAral~~ 288 (372)
+ +.+.+...+...+++.+... ..+.+.. +++.+|+.+.. ++++.+||+||+ +|||||+.
T Consensus 87 --~-v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 87 --F-VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp --E-ECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHH-HHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred --E-EecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHH-HHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 3 55555444433333333211 0111223 34678887754 889999999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|||+..+..++. ++.++.. ..|.+||++|||++.. +.++.+|+.++
T Consensus 163 ~p~--llllDEPts~LD~~~~~~i~~--------~l~~l~~-~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 163 NPP--IILADQPTWALDSKTGEKIMQ--------LLKKLNE-EDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp CCS--EEEEESTTTTSCHHHHHHHHH--------HHHHHHH-HHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-HcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 999 999999 99999999988888 8888852 3489999999999753 55678888773
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=1.7e-30 Score=246.37 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=142.5
Q ss_pred HHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+|.+.|+.. .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..... .....+...++
T Consensus 12 ~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~--~~~~~~~~~ig-- 87 (275)
T 3gfo_A 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR--KGIMKLRESIG-- 87 (275)
T ss_dssp EEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSH--HHHHHHHHSEE--
T ss_pred EEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccc--ccHHHHhCcEE--
Confidence 455667543 3789999999999999999999999999999999999999999999887763111 11222333333
Q ss_pred eeEecccc-ccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEK-AKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+ +++.+. ......+++.+... ..+.++.+ ++.+|+.+..++++.+||+||| +|||||+.+|+
T Consensus 88 ~-v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~-- 163 (275)
T 3gfo_A 88 I-VFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA-LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK-- 163 (275)
T ss_dssp E-ECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHH-HHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS--
T ss_pred E-EEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC--
Confidence 3 455431 11111222222211 01223334 4788999889999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+|+||| |+|||+..+..+++ ++.++.. .+|.|||++||+++.. +.++..|+.+.+
T Consensus 164 lLlLDEPts~LD~~~~~~i~~--------~l~~l~~-~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMK--------LLVEMQK-ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHH--------HHHHHHH-HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred EEEEECccccCCHHHHHHHHH--------HHHHHHh-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999 99999999988887 8888852 2388999999999886 556788988743
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=1e-30 Score=246.40 Aligned_cols=191 Identities=19% Similarity=0.233 Sum_probs=142.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++|.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. ... .....+...+++
T Consensus 28 ~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~-~~~~~~~~~i~~- 104 (263)
T 2olj_A 28 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD-TNLNKVREEVGM- 104 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT-CCHHHHHHHEEE-
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc-ccHHHHhCcEEE-
Confidence 35666776656789999999999999999999999999999999999999999999876652 110 112222333333
Q ss_pred eeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
+.+.....+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||| +||||++.+|+
T Consensus 105 --v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~-- 179 (263)
T 2olj_A 105 --VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME-LLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK-- 179 (263)
T ss_dssp --ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHH-HHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS--
T ss_pred --EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC--
Confidence 44443333322223222210 0112333 44788998888999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+..+++ +|.++. ++|.+||++||+++.. +.++.+|+.+.
T Consensus 180 lllLDEPts~LD~~~~~~~~~--------~l~~l~--~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLS--------VMKQLA--NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 888885 3488999999998764 55778888763
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=1.3e-30 Score=245.61 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=141.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc---------hhhhhHHHH
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR---------AAASDQLEI 219 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r---------~~a~eql~~ 219 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+... .....+...
T Consensus 11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1b0u_A 11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRL 90 (262)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHH
T ss_pred eEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHH
Confidence 45566766567899999999999999999999999999999999999999999998776531 000111222
Q ss_pred HHHhhCcceeEeccccccHHHHHHHHHHhh-----------hhhchHHHHHHhhCCCcc-chhhHhHHHHHHH---HHHH
Q 017380 220 WAERTGCEIVVAEGEKAKASSVLSQAVKRG-----------KEQGFDIVLCDTSGRLHT-NYSLMEELVACKK---AVGK 284 (372)
Q Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~r---~iAr 284 (372)
+...+++ +++.....+...+.+.+... ..+.++. +++.+|+.+. .++++.+||+||+ +|||
T Consensus 91 ~~~~i~~---v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 91 LRTRLTM---VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK-YLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHEEE---ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHH-HHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred HhcceEE---EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHH-HHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 3333333 44444333322222222210 0112333 4478899888 8899999999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
|++.+|+ +|+||| |+|||+..+..+++ +|.++. .+|.+||++||+++.. +.++.+|+.+.
T Consensus 167 aL~~~p~--lllLDEPts~LD~~~~~~~~~--------~l~~l~--~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 167 ALAMEPD--VLLFDEPTSALDPELVGEVLR--------IMQQLA--EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp HHHTCCS--EEEEESTTTTSCHHHHHHHHH--------HHHHHH--HTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHhcCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 999999 99999999988887 888885 3488999999998764 56778888763
No 20
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.96 E-value=3.9e-30 Score=258.14 Aligned_cols=266 Identities=33% Similarity=0.573 Sum_probs=213.6
Q ss_pred ccCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHHHhccCCCCCccceeccCCe
Q 017380 96 LADTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGK----LKSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPA 171 (372)
Q Consensus 96 ~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~ 171 (372)
.+++++.+++++..|+++||+..++.++++.+++.....+ +.....+...+.+.|.+.++.... ++++.-.++.
T Consensus 23 e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~~~~~~ 100 (432)
T 2v3c_C 23 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAK--KLELNPKKQN 100 (432)
T ss_dssp SSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHHCCSCC--CCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHhCCCCc--CccccCCCCe
Confidence 4567899999999999999999999999999998775542 233444777888889988875321 2333223457
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecc-ccccHHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEG-EKAKASSVLSQAVKRGK 250 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (372)
+++|+|++|+||||++.+|++.+...+.+|.+.+.|++|.++.+|++.|+...++++ +... ...++...+.+.+...
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v-~~~~~~~~dp~~i~~~~l~~~- 178 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPI-YGDETRTKSPVDIVKEGMEKF- 178 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCE-ECCSSSCCSSSTTHHHHHHTT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcce-EecCCCCCCHHHHHHHHHHHh-
Confidence 999999999999999999999999888899999999999999999999999999988 3332 3334433344555543
Q ss_pred hhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhc-CchhhHhhhcccc
Q 017380 251 EQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVV-GITGLILTKLDGS 329 (372)
Q Consensus 251 ~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~-~~tgiiltkld~t 329 (372)
.++|.+++||+|+.+.....+.+|... .. +..|+++++|+|.+.|+|...+.+.|+..+ +++++|++|+|.+
T Consensus 179 -~~~D~vIIDT~G~~~~~~~l~~~l~~i----~~--~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKEEKGLLEEMKQI----KE--ITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp -SSCSEEEEECCCSCSSHHHHHHHHHHT----TS--SSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSC
T ss_pred -hCCCEEEEcCCCCccccHHHHHHHHHH----HH--HhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCc
Confidence 678889999999988666566665322 11 137999999999977889888888888777 8899999999987
Q ss_pred ccceeeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 330 ARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 330 ~~gg~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.+++.++.+.+.++.|+.|+++||.++|+.+|+|..+++++++
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g 294 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLG 294 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTC
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcC
Confidence 7788888889999999999999999999999999999999874
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=5.9e-30 Score=250.72 Aligned_cols=194 Identities=14% Similarity=0.201 Sum_probs=150.1
Q ss_pred HHHHHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 148 NSVLDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 148 ~~l~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
++|.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|...... .++..+...
T Consensus 28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~-~~~~~~r~~ 106 (366)
T 3tui_C 28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE-SELTKARRQ 106 (366)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH-HHHHHHHTT
T ss_pred EeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHHHhCc
Confidence 467777864 236899999999999999999999999999999999999999999998887654332 223333333
Q ss_pred hCcceeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+ +++.....+...+++.+... ..+.++.+ ++.+|+.+..++++.+|||||| +|||||+.+|
T Consensus 107 --Ig~-v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~l-L~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 107 --IGM-IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL-LSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp --EEE-ECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHH-HHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred --EEE-EeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 333 56665555443444433221 11223334 4788999989999999999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccCC
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVED 357 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~D 357 (372)
+ +|+||| |++||+..+..+++ +|.++.. ..|.|||+||||++.. +.++..|+.+++
T Consensus 183 ~--lLLlDEPTs~LD~~~~~~i~~--------lL~~l~~-~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 183 K--VLLCDQATSALDPATTRSILE--------LLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp S--EEEEESTTTTSCHHHHHHHHH--------HHHHHHH-HSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred C--EEEEECCCccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9 999999 99999999988888 8888863 4589999999999875 567889988743
No 22
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.96 E-value=6.1e-29 Score=253.28 Aligned_cols=266 Identities=30% Similarity=0.499 Sum_probs=217.1
Q ss_pred CcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHHHHhccCCCCCccceeccCCeEE
Q 017380 98 DTDKVLDELEEALLVSDFGPRITIKIVESLRDDILAGKL----KSGPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVV 173 (372)
Q Consensus 98 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi 173 (372)
++++.+++++..|+++||+.+++.++++.+++.....++ .+.+.+..++.+.|.+.++... .++++.-.++.++
T Consensus 27 ~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~--~~~~~~~~~~~vI 104 (504)
T 2j37_W 27 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGV--KAWTPTKGKQNVI 104 (504)
T ss_dssp HHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCCCC--CCCCCCSS--EEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhcccc--chhccccCCCeEE
Confidence 456789999999999999999999999999987765443 3446677889999999998532 2333333467899
Q ss_pred EEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhc
Q 017380 174 LIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQG 253 (372)
Q Consensus 174 ~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (372)
+|+|++|||||||+++|+..+...+.+|.+.+.|++|.++.+|++.++.+.++++ +......++..++.+.+......+
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v-~~~~~~~dp~~i~~~al~~~~~~~ 183 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF-YGSYTEMDPVIIASEGVEKFKNEN 183 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE-EECCCCSCHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE-EccCCCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998778899999999999999999999999999987 444444566666666666554467
Q ss_pred hHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 254 FDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 254 ~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
++.+++||+|+.+.....+.++....+ ++ .|+++++|+|.+.|.+...+.+.|.+.++++++|++|+|...+++
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~----~i--~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~~g 257 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVAN----AI--QPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGG 257 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHH----HH--CCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCCCT
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHh----hh--cCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccchH
Confidence 888999999998866666666554332 22 789999999998789988888888777889999999999887788
Q ss_pred eeEeeeeccCCceeeeccCcccCCCCCCCHHHHHHHhcC
Q 017380 334 CVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 372 (372)
Q Consensus 334 ~vi~isH~~~~pi~~i~~Ge~v~Dl~~~~~~~~v~~l~~ 372 (372)
.++.+.+.++.|+.|++.||.++|+.+|+|..+++++++
T Consensus 258 ~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G 296 (504)
T 2j37_W 258 GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296 (504)
T ss_dssp HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCT
T ss_pred HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcC
Confidence 888888999999999999999999999999999987763
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=5.9e-30 Score=240.33 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=141.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..+... +.+
T Consensus 12 ~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~---~~~~~~--i~~ 86 (257)
T 1g6h_A 12 NIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA---ELYHYG--IVR 86 (257)
T ss_dssp EEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH---HHHHHT--EEE
T ss_pred eeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH---HHHhCC--EEE
Confidence 455667665678999999999999999999999999999999999999999999987765322111 112222 323
Q ss_pred eEeccccccHHHHHHHHHHhhh-----------------------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HH
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK-----------------------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AV 282 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~i 282 (372)
+.+.....+...+.+.+.... ...++. +++.+|+.+..++++.+||+||| +|
T Consensus 87 -v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 87 -TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK-ILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp -CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHH-HHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred -EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHH-HHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 444443333223333332210 011233 44688998888999999999999 99
Q ss_pred HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 283 GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 283 Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|||++.+|+ +|+||| |+|||+..+..+++ ++.++. .+|.+||++||+++.. +.++.+|+.+
T Consensus 165 AraL~~~p~--lllLDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 165 GRALMTNPK--MIVMDEPIAGVAPGLAHDIFN--------HVLELK--AKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp HHHHHTCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HHHHHcCCC--EEEEeCCccCCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999 999999 99999999988887 888886 3489999999999875 4567888877
Q ss_pred C
Q 017380 356 E 356 (372)
Q Consensus 356 ~ 356 (372)
.
T Consensus 233 ~ 233 (257)
T 1g6h_A 233 A 233 (257)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=1.2e-30 Score=246.40 Aligned_cols=189 Identities=18% Similarity=0.239 Sum_probs=143.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... +.+....++
T Consensus 16 ~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~----~~~~~~i~~-- 89 (266)
T 4g1u_C 16 HLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP----KALARTRAV-- 89 (266)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH----HHHHHHEEE--
T ss_pred eEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH----HHHhheEEE--
Confidence 45566776677899999999999999999999999999999999999999999998877643221 112223332
Q ss_pred eEeccccccHHHHHHHHHHhhh--------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC------CCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK--------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG------APN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~------~P~ 291 (372)
+.+.....+...+.+.+.... .+.++.+ ++.+|+.+..++++.+||+||+ +|||||+. +|+
T Consensus 90 -v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 90 -MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQV-MAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp -ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHH-HHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred -EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHH-HHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 344333222222334333211 1123333 4688999888999999999999 99999999 999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+..+++ ++.++.+ ..+.+||++|||++.. +.++.+|+.+.
T Consensus 168 --lLllDEPts~LD~~~~~~i~~--------~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 168 --WLFLDEPTSALDLYHQQHTLR--------LLRQLTR-QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp --EEEECCCCSSCCHHHHHHHHH--------HHHHHHH-HSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred --EEEEeCccccCCHHHHHHHHH--------HHHHHHH-cCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999 99999999988887 8888863 3356999999999875 56788998874
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.5e-30 Score=256.40 Aligned_cols=187 Identities=15% Similarity=0.192 Sum_probs=147.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+|.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..++.+
T Consensus 8 ~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--------~r~ig~ 79 (381)
T 3rlf_A 8 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--------ERGVGM 79 (381)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--------GSCEEE
T ss_pred eEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--------HCCEEE
Confidence 456678777778999999999999999999999999999999999999999999988776432211 123444
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.+...|...+++.+... ..+.++.+ ++.+|+.+..++++.+|||||| +|||||+.+|+ +|
T Consensus 80 -VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~-l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~--lL 155 (381)
T 3rlf_A 80 -VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV-AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS--VF 155 (381)
T ss_dssp -ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHH-HHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS--EE
T ss_pred -EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC--EE
Confidence 66666555544444443221 01223334 4788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |++||+..+.+++. +|.++.. +.|.++|+||||++.. +.++.+|+.+.
T Consensus 156 LLDEPts~LD~~~~~~l~~--------~l~~l~~-~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRI--------EISRLHK-RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp EEESTTTTSCHHHHHHHHH--------HHHHHHH-HHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEECCCcCCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 99999999988887 7888753 4489999999998765 66788998773
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=5.5e-30 Score=250.62 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=147.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+|.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... .. ..+.++.+
T Consensus 9 ~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~--~~--~~~r~ig~ 84 (359)
T 3fvq_A 9 HLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN--LP--VRERRLGY 84 (359)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB--CC--GGGSCCEE
T ss_pred eEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc--cc--hhhCCEEE
Confidence 456678777788999999999999999999999999999999999999999999988775321100 00 01123444
Q ss_pred eEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.+...+...+++.+.... .+.++.+ ++.+|+.+..++++.+|||||| +|||||+.+|+ +|
T Consensus 85 -vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~-l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~--lL 160 (359)
T 3fvq_A 85 -LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM-LELTGISELAGRYPHELSGGQQQRAALARALAPDPE--LI 160 (359)
T ss_dssp -ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHH-HHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS--EE
T ss_pred -EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHH-HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 666666666555666654321 1223334 4788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+||| |++||+..+.+++. .+.++.. +.|.|+|++|||++.. +.++.+|+.+.
T Consensus 161 LLDEPts~LD~~~r~~l~~--------~l~~~~~-~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIRE--------DMIAALR-ANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp EEESTTTTSCHHHHHHHHH--------HHHHHHH-HTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEeCCcccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 9999 99999999988876 4555432 4589999999998765 66788898773
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=6.8e-30 Score=239.81 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=140.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+|.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ...+...++ +
T Consensus 20 ~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-----~~~~~~~i~--~ 92 (256)
T 1vpl_A 20 DLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-----PHEVRKLIS--Y 92 (256)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-----HHHHHTTEE--E
T ss_pred EEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc-----HHHHhhcEE--E
Confidence 456667665678999999999999999999999999999999999999999999987765321 112222222 2
Q ss_pred eEeccccccHHHHHHHHHHhh-------h---hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-------K---EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------~---~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.+...+...+.+.+... . .+.++. +++.+|+.+..++++.+||+||+ +||||++.+|+ +|
T Consensus 93 -v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~-~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~--ll 168 (256)
T 1vpl_A 93 -LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR--LA 168 (256)
T ss_dssp -ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS--EE
T ss_pred -EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHH-HHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 44443332221222222110 0 112333 34788998888999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|||+..+..++. +|.++. ++|.+||++||+++.. +.++.+|+.+
T Consensus 169 lLDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRK--------ILKQAS--QEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp EEESTTTTCCHHHHHHHHH--------HHHHHH--HTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred EEeCCccccCHHHHHHHHH--------HHHHHH--hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 9999 99999999988887 888885 3588999999997654 5567888776
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=3.1e-29 Score=245.24 Aligned_cols=186 Identities=14% Similarity=0.132 Sum_probs=143.5
Q ss_pred HHHHHh-ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 149 SVLDLL-TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 149 ~l~~~~-~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
++.+.| ++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... .+..+.
T Consensus 19 ~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--------~~r~ig 90 (355)
T 1z47_A 19 GVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--------QKRNVG 90 (355)
T ss_dssp EEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--------GGSSEE
T ss_pred EEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--------hhCcEE
Confidence 456677 66667899999999999999999999999999999999999999999998776532111 112333
Q ss_pred eeEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceE
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEIL 294 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~l 294 (372)
+ +++.....+...+++.+... ..+.++. +++.+|+.+..++++.+||+||| +|||||+.+|+ +
T Consensus 91 ~-v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~-~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~--l 166 (355)
T 1z47_A 91 L-VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE-LLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ--V 166 (355)
T ss_dssp E-ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS--E
T ss_pred E-EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC--E
Confidence 3 55555444433333333221 0122333 44788999999999999999999 99999999999 9
Q ss_pred EEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 295 LVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 295 LvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+||| |++||+..+.++.. .|.++.. +.|.++|++|||++.. +.++.+|+.+
T Consensus 167 LLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRT--------FVRQVHD-EMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHH--------HHHHHHH-HHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999 99999999988887 7777752 3488999999998764 5677888876
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=2.7e-29 Score=245.30 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=143.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+.. +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+..... .+.+ .+.+
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~------~~~r--~ig~ 76 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS------PEKH--DIAF 76 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC------HHHH--TCEE
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc------hhhC--cEEE
Confidence 345667765 789999999999999999999999999999999999999999999877653311 1112 3333
Q ss_pred eEeccccccHHHHHHHHHHhhh-------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK-------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+++.....+...+++.+.... .+.++.+ ++.+|+.+..++++.+||+||| +|||||+.+|+ +|+||
T Consensus 77 -v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~-l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~--lLLLD 152 (348)
T 3d31_A 77 -VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDT-ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK--ILLLD 152 (348)
T ss_dssp -ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHH-HHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS--EEEEE
T ss_pred -EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHH-HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEE
Confidence 556555444433444433211 1223444 4788999999999999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
| |++||+..+.++.. .|.++.. +.|.++|++|||+... +.++.+|+.+
T Consensus 153 EP~s~LD~~~~~~l~~--------~l~~l~~-~~g~tii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 153 EPLSALDPRTQENARE--------MLSVLHK-KNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp SSSTTSCHHHHHHHHH--------HHHHHHH-HTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CccccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9 99999999988887 7888753 4588999999998754 5678888776
No 30
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=2.9e-29 Score=245.95 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=144.7
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... +..+.+
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--------~r~ig~ 79 (359)
T 2yyz_A 8 NLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--------YREVGM 79 (359)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--------GTTEEE
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--------hCcEEE
Confidence 445667665678999999999999999999999999999999999999999999988775332111 123333
Q ss_pred eEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.....+...+++.+.... .+.++. +++.+|+.+..++++.+||+||| +|||||+.+|+ +|
T Consensus 80 -v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~--lL 155 (359)
T 2yyz_A 80 -VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE-IARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK--VL 155 (359)
T ss_dssp -ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHH-HHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS--EE
T ss_pred -EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 556555555444555554321 112333 44788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |++||+..+.++.. .|.++.. +.|.++|++|||++.. +.++..|+.+
T Consensus 156 LLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRA--------EIKHLQQ-ELGITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp EEESTTTTSCHHHHHHHHH--------HHHHHHH-HHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEECCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 99999999988887 7777752 3488999999998764 5678888876
No 31
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2e-29 Score=234.44 Aligned_cols=188 Identities=20% Similarity=0.296 Sum_probs=138.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... .+. +.++.+
T Consensus 11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~----~~~-~~~i~~ 85 (240)
T 1ji0_A 11 SLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH----VIN-RMGIAL 85 (240)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH----HHH-HTTEEE
T ss_pred eEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHH----HHH-hCCEEE
Confidence 345566655578999999999999999999999999999999999999999999987765322111 111 122333
Q ss_pred eEeccccccHHHHHHHHHHhhh---------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK---------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+.+.+...+...+.+.+.... .+..+. +++.+ |+.+..++++.+||+||+ +||||++.+|+ +|
T Consensus 86 -v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~--ll 161 (240)
T 1ji0_A 86 -VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK--LL 161 (240)
T ss_dssp -ECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHH-HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS--EE
T ss_pred -EecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHH-HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 555444333323444443211 011222 33566 476777888999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |+|||+..+..++. ++.++. ++|.++|++||+++.. +.++.+|+.+
T Consensus 162 lLDEPts~LD~~~~~~l~~--------~l~~~~--~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFE--------VIQKIN--QEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp EEECTTTTCCHHHHHHHHH--------HHHHHH--HTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEcCCcccCCHHHHHHHHH--------HHHHHH--HCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999 99999999988887 888885 3588999999998653 5577888876
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.9e-29 Score=246.13 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=143.2
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... +..+.+
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--------~r~ig~ 79 (362)
T 2it1_A 8 NIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--------DRNVGL 79 (362)
T ss_dssp EEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--------GTTEEE
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--------HCcEEE
Confidence 455667766678999999999999999999999999999999999999999999988775332111 122333
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.....+...+++.+... ..+.++.+ ++.+|+.+..++++.+|||||| +|||||+.+|+ +|
T Consensus 80 -v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~-l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~--lL 155 (362)
T 2it1_A 80 -VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV-AKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE--VL 155 (362)
T ss_dssp -ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS--EE
T ss_pred -EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC--EE
Confidence 55555444433333333221 01223344 4788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |++||+..+.++.. .|.++.. ..|.++|++|||++.. +.++.+|+.+
T Consensus 156 LLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRA--------ELKRLQK-ELGITTVYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp EEESGGGGSCHHHHHHHHH--------HHHHHHH-HHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEECccccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 99999999988887 7888752 3488999999998764 5677888876
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=4.6e-29 Score=236.95 Aligned_cols=188 Identities=17% Similarity=0.204 Sum_probs=138.5
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc--chhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF--RAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~--r~~a~eql~~~~~~~~ 225 (372)
+++.+.|+...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. ... ...+...++
T Consensus 25 ~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~----~~~~~~~i~ 100 (279)
T 2ihy_A 25 DQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS----AETVRQHIG 100 (279)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CC----HHHHHTTEE
T ss_pred EeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCC----HHHHcCcEE
Confidence 35666777656789999999999999999999999999999999999999999999876653 111 111222222
Q ss_pred cceeEeccccc--cHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHH
Q 017380 226 CEIVVAEGEKA--KASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 226 v~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral 286 (372)
+ +.+.... .+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||| +|||||
T Consensus 101 --~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 101 --F-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQ-LLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp --E-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHH-HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred --E-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHH-HHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 2 3333221 1100122222110 0112333 34788998888999999999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceee--EeeeeccCCc------eeeeccCccc
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCV--VSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~v--i~isH~~~~p------i~~i~~Ge~v 355 (372)
+.+|+ +|+||| |+|||+..+..++. +|.++. .+|.+| |++||+++.. +.++.+|+.+
T Consensus 177 ~~~p~--lLlLDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 177 MGQPQ--VLILDEPAAGLDFIARESLLS--------ILDSLS--DSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp HTCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHHH--HHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred hCCCC--EEEEeCCccccCHHHHHHHHH--------HHHHHH--HCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999 999999 99999999988887 888885 347899 9999998764 5567888876
No 34
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=9.4e-29 Score=233.28 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=133.1
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc-cc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE-KA 236 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~-~~ 236 (372)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... .+...++ + +.+.+ ..
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-------~~~~~i~--~-v~q~~~~~ 90 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-------EIRRNIG--I-AFQYPEDQ 90 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-------HHGGGEE--E-ECSSGGGG
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-------HhhhhEE--E-Eeccchhh
Confidence 468899999999999999999999999999999999999999999987665321 2222232 3 44442 11
Q ss_pred cHHHHHHHHHHhh-----hh----hchHHHHHHhhCCC--ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CC
Q 017380 237 KASSVLSQAVKRG-----KE----QGFDIVLCDTSGRL--HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TT 301 (372)
Q Consensus 237 ~~~~~~~~~~~~~-----~~----~~~d~vl~dt~G~~--~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-ts 301 (372)
.+...+.+.+... .. +.++. +++.+|+. +..++++.+||+||+ +|||||+.+|+ +|+||| |+
T Consensus 91 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~--lllLDEPts 167 (266)
T 2yz2_A 91 FFAERVFDEVAFAVKNFYPDRDPVPLVKK-AMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD--ILILDEPLV 167 (266)
T ss_dssp CCCSSHHHHHHHTTTTTCTTSCSHHHHHH-HHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS--EEEEESTTT
T ss_pred cCCCcHHHHHHHHHHhcCCHHHHHHHHHH-HHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC--EEEEcCccc
Confidence 1112233333221 01 11333 44788998 888999999999999 99999999999 999999 99
Q ss_pred CCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 302 GLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 302 glD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|||+..+..+++ ++.++. .+|.+||++||+++.. +.++.+|+.+
T Consensus 168 ~LD~~~~~~l~~--------~l~~l~--~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 168 GLDREGKTDLLR--------IVEKWK--TLGKTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp TCCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHH--------HHHHHH--HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999988887 888885 3488999999998875 4467778765
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=5.2e-29 Score=243.84 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=145.0
Q ss_pred HHHHHhccCC--CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKG--NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~--~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+... +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..... .+..+
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~~~~--~~r~i 84 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK-LIVPP--EDRKI 84 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE-ESSCG--GGSCE
T ss_pred eEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccc-ccCCh--hhCCE
Confidence 4456677666 7899999999999999999999999999999999999999999998776533100 00000 11233
Q ss_pred ceeEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCce
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEI 293 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~ 293 (372)
.+ +++.....+...+++.+.... .+.++. +++.+|+.+..++++.+|||||| +|||||+.+|+
T Consensus 85 g~-v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~-- 160 (353)
T 1oxx_K 85 GM-VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE-VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS-- 160 (353)
T ss_dssp EE-EETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHH-HHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS--
T ss_pred EE-EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC--
Confidence 33 566655555444555554321 112333 44788999999999999999999 99999999999
Q ss_pred EEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 294 LLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 294 lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |++||+..+.++.. .|.++.. ..|.++|++|||++.. +.++..|+.+
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARA--------LVKEVQS-RLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHH--------HHHHHHH-HHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEEEECCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 99999999988887 7777752 3488999999998764 5677888876
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=6.1e-29 Score=227.37 Aligned_cols=172 Identities=15% Similarity=0.066 Sum_probs=130.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|+. .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.. + +.. .+.+
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~----~~~--~i~~ 82 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K----VKG--KIFF 82 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G----GGG--GEEE
T ss_pred EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h----hcC--cEEE
Confidence 44556766 6789999999999999999999999999999999999999999999776642 1 112 2222
Q ss_pred eEeccccccHHHHHHHHHHhh--------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVL 297 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvL 297 (372)
+.+.+...+...+.+.+... ....++. +++.+|+.+. ++++.+||+||+ +||||++.+|+ +|+|
T Consensus 83 -v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~--lllL 157 (214)
T 1sgw_A 83 -LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD-ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAE--IYVL 157 (214)
T ss_dssp -ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHH-HHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCS--EEEE
T ss_pred -EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHH-HHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCC--EEEE
Confidence 44443332222222222211 1112333 3478899888 889999999999 99999999999 9999
Q ss_pred cC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee
Q 017380 298 DG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK 347 (372)
Q Consensus 298 DE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~ 347 (372)
|| |+|||+..+..+++ ++.++. ++|.+||++||+++....
T Consensus 158 DEPts~LD~~~~~~l~~--------~l~~~~--~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLK--------SILEIL--KEKGIVIISSREELSYCD 198 (214)
T ss_dssp ESTTTTSCTTTHHHHHH--------HHHHHH--HHHSEEEEEESSCCTTSS
T ss_pred ECCCcCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHH
Confidence 99 99999999988887 788775 347899999999987644
No 37
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=9.4e-29 Score=243.54 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=142.8
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.........+.. .+..+.+
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~ 85 (372)
T 1g29_1 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAM 85 (372)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEE
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEE
Confidence 34566766567899999999999999999999999999999999999999999998776533100000000 1123333
Q ss_pred eEeccccccHHHHHHHHHHhh----------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRG----------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.....+...+++.+... ..+.++. +++.+|+.+..++++.+||+||+ +|||||+.+|+ +|
T Consensus 86 -v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~--lL 161 (372)
T 1g29_1 86 -VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE-VAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ--VF 161 (372)
T ss_dssp -ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS--EE
T ss_pred -EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC--EE
Confidence 55555444433334333221 0122333 44788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |++||+..+.++.. .|.++.. +.|.++|++|||++.. +.++.+|+.+
T Consensus 162 LLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRA--------ELKKLQR-QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp EEECTTTTSCHHHHHHHHH--------HHHHHHH-HHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EECCCCccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999 99999999988887 7777752 3488999999998764 5677888876
No 38
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=1.4e-28 Score=232.66 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=138.3
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
++|.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+...+
T Consensus 20 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~----~~~~~~i 95 (271)
T 2ixe_A 20 QDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH----HYLHTQV 95 (271)
T ss_dssp EEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH----HHHHHHE
T ss_pred EEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH----HHHhccE
Confidence 456667765 567899999999999999999999999999999999999999999998776532211 1222333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh--------------hhchHHHHHHhh--CCCccchhhHhHHHHHHH---HHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK--------------EQGFDIVLCDTS--GRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~d~vl~dt~--G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
++ +.+.+...+. .+.+.+.... ....+.++ +.+ |+....++++.+||+||+ +||||
T Consensus 96 ~~---v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 96 AA---VGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFI-SGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EE---ECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHH-HHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EE---EecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHH-HhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 32 4444333322 3333332210 11122223 344 566667788999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+.+|+ +|+||| |+|||+..+..++. +|.++.. ..|.+||++||+++.. +.++..|+.+.
T Consensus 171 L~~~p~--lllLDEPts~LD~~~~~~i~~--------~l~~~~~-~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 171 LIRKPR--LLILDNATSALDAGNQLRVQR--------LLYESPE-WASRTVLLITQQLSLAERAHHILFLKEGSVCE 236 (271)
T ss_dssp HTTCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHCTT-TTTSEEEEECSCHHHHTTCSEEEEEETTEEEE
T ss_pred HhcCCC--EEEEECCccCCCHHHHHHHHH--------HHHHHHh-hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999 99999999988887 8887752 3488999999998753 55777887763
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.5e-28 Score=229.92 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=130.4
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh--hhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR--LKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~--l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.|+...+++++||++++|++++|+||||||||||+++|+|+ ++|++|+|.+.+.+.......+ +. +.++
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~----~~-~~~i 82 (250)
T 2d2e_A 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE----RA-RKGL 82 (250)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH----HH-HTTB
T ss_pred eEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH----HH-hCcE
Confidence 344556655578999999999999999999999999999999998 7899999999877653322111 11 1222
Q ss_pred ceeEeccccccHHHHHHHHHHh------h-------hhhchHHHHHHhhCC-CccchhhHhH-HHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKR------G-------KEQGFDIVLCDTSGR-LHTNYSLMEE-LVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~d~vl~dt~G~-~~~~~~~~~e-LS~G~r---~iAral~~ 288 (372)
.+ +.+.+...+...+.+.+.. . ..+.++. +++.+|+ .+..++++.+ ||+||+ +|||||+.
T Consensus 83 ~~-v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FL-AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKK-ALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CC-CCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHH-HHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EE-eccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHH-HHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 22 3333222211111111100 0 0112333 3467899 4778888999 999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|||+..+..+++ +|.++. .+|.+||++||+++.. +.++.+|+.+.
T Consensus 161 ~p~--lllLDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 161 EPT--YAVLDETDSGLDIDALKVVAR--------GVNAMR--GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp CCS--EEEEECGGGTTCHHHHHHHHH--------HHHHHC--STTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred CCC--EEEEeCCCcCCCHHHHHHHHH--------HHHHHH--hcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 999 999999 99999999988887 888885 4588999999998754 33567887763
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=4.6e-29 Score=245.58 Aligned_cols=186 Identities=13% Similarity=0.126 Sum_probs=141.1
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
++.+.|++..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... +..+.+
T Consensus 16 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--------~r~ig~ 87 (372)
T 1v43_A 16 NLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--------DRNISM 87 (372)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--------GGTEEE
T ss_pred EEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--------hCcEEE
Confidence 566777765678999999999999999999999999999999999999999999988765332111 122333
Q ss_pred eEeccccccHHHHHHHHHHhhh----------hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 229 VVAEGEKAKASSVLSQAVKRGK----------EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
+++.....+...+++.+.... .+.++. +++.+|+.+..++++.+||+||| +|||||+.+|+ +|
T Consensus 88 -v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~--lL 163 (372)
T 1v43_A 88 -VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW-AAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD--VL 163 (372)
T ss_dssp -EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHH-HHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS--EE
T ss_pred -EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC--EE
Confidence 555544444334444443320 112333 44788999999999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+||| |++||+..+.++.. .|.++.. ..|.++|++|||+... +.++..|+.+
T Consensus 164 LLDEP~s~LD~~~r~~l~~--------~l~~l~~-~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRA--------EIKKLQQ-KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp EEESTTTTSCHHHHHHHHH--------HHHHHHH-HHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEcCCCccCCHHHHHHHHH--------HHHHHHH-hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 99999999988887 7777752 3488999999998764 5677888876
No 41
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=2.6e-28 Score=227.83 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=133.4
Q ss_pred HHHHHh--ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 149 SVLDLL--TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 149 ~l~~~~--~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++.+.| +...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..+...+++
T Consensus 12 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~----~~~~~~i~~ 87 (247)
T 2ff7_A 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP----NWLRRQVGV 87 (247)
T ss_dssp EEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHHHHHEEE
T ss_pred EEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHHhcEEE
Confidence 345566 23456899999999999999999999999999999999999999999998776532211 122233332
Q ss_pred ceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCcc-----------chhhHhHHHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLHT-----------NYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~-----------~~~~~~eLS~G~r---~iAral~~ 288 (372)
+.+.+...+. .+.+.+.... ...+..+ ++.+|+.+. .++.+.+||+||+ +||||++.
T Consensus 88 ---v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 88 ---VLQDNVLLNR-SIIDNISLANPGMSVEKVIYA-AKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp ---ECSSCCCTTS-BHHHHHTTTCTTCCHHHHHHH-HHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred ---EeCCCccccc-cHHHHHhccCCCCCHHHHHHH-HHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 4444433332 3444443211 1112222 234455433 3345689999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |+|||+..+..+++ +|.++. +|.++|++||++... +.++.+|+.+.
T Consensus 163 ~p~--lllLDEPts~LD~~~~~~i~~--------~l~~~~---~g~tviivtH~~~~~~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 163 NPK--ILIFDEATSALDYESEHVIMR--------NMHKIC---KGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 223 (247)
T ss_dssp CCS--EEEECCCCSCCCHHHHHHHHH--------HHHHHH---TTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred CCC--EEEEeCCcccCCHHHHHHHHH--------HHHHHc---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999 999999 99999999988887 788773 388999999998764 55677887763
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=7.1e-28 Score=224.00 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=135.5
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCccee
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIV 229 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~ 229 (372)
+.+.|+. .++++||++++ ++++|+||||||||||+++|+|+++|++|+|.+.+.+...... +.. .+.+
T Consensus 7 l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~--~i~~- 74 (240)
T 2onk_A 7 AEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP------ERR--GIGF- 74 (240)
T ss_dssp EEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT------TTS--CCBC-
T ss_pred EEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch------hhC--cEEE-
Confidence 3445653 37899999999 9999999999999999999999999999999998766532110 111 2222
Q ss_pred EeccccccHHHHHHHHHHhh--------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 230 VAEGEKAKASSVLSQAVKRG--------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~--------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
+.+.....+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||+ +||||++.+|+ +|+||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLD 151 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE-MAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR--LLLLD 151 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHH-HHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS--SBEEE
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHH-HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEe
Confidence 34443333322233333221 1122333 34788998888999999999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
| |+|||+..+..+++ ++.++.. ..|.+||++||+++.. +.++.+|+.+
T Consensus 152 EPts~LD~~~~~~~~~--------~l~~l~~-~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 152 EPLSAVDLKTKGVLME--------ELRFVQR-EFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp STTSSCCHHHHHHHHH--------HHHHHHH-HHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9 99999999988887 8888752 3488999999998754 5577888776
No 43
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=3e-28 Score=228.22 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=127.6
Q ss_pred HHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 150 VLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 150 l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+.+.|+ +..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.. +.+ +
T Consensus 10 l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~----~i~---------------~ 70 (253)
T 2nq2_C 10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----SIG---------------F 70 (253)
T ss_dssp EEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS----CEE---------------E
T ss_pred EEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec----cEE---------------E
Confidence 445565 55568999999999999999999999999999999999999999997310 011 1
Q ss_pred eEeccccccHHHHHHHHHHhh--------------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG--------------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.+...+...+.+.+... ..+.++. +++.+|+.+..++++.+||+||+ +||||++.+|+
T Consensus 71 -v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 -VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ-ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp -ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH-HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred -EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH-HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 11111111101111111110 0112233 34678998888899999999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|+||| |+|||+..+..+++ ++.++.. ..|.+||++||+++.. +.++.+|+ +
T Consensus 149 --lllLDEPts~LD~~~~~~l~~--------~l~~l~~-~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 149 --LILLDEPTSALDLANQDIVLS--------LLIDLAQ-SQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F 207 (253)
T ss_dssp --EEEESSSSTTSCHHHHHHHHH--------HHHHHHH-TSCCEEEEEESCHHHHHHHCSEEEEEETTE-E
T ss_pred --EEEEeCCcccCCHHHHHHHHH--------HHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E
Confidence 999999 99999999988887 8888752 3388999999998764 55778888 6
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=6.7e-28 Score=227.58 Aligned_cols=190 Identities=19% Similarity=0.154 Sum_probs=134.9
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh--hhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR--LKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~--l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++.+.|++..+++++||++++|++++|+||||||||||+++|+|+ ++|++|+|.+.+.+.......+ +. +.+
T Consensus 24 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~----~~-~~~ 98 (267)
T 2zu0_C 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED----RA-GEG 98 (267)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHH----HH-HHT
T ss_pred EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHH----Hh-hCC
Confidence 4566677665678999999999999999999999999999999999 4689999999877653321111 11 122
Q ss_pred cceeEeccccccHH----HHH---HHHHH--hh--------hhhchHHHHHHhhCCC-ccchhhHh-HHHHHHH---HHH
Q 017380 226 CEIVVAEGEKAKAS----SVL---SQAVK--RG--------KEQGFDIVLCDTSGRL-HTNYSLME-ELVACKK---AVG 283 (372)
Q Consensus 226 v~~~~~~~~~~~~~----~~~---~~~~~--~~--------~~~~~d~vl~dt~G~~-~~~~~~~~-eLS~G~r---~iA 283 (372)
+.+ +.+.+...+. ..+ ..... .. ....++.+ ++.+|+. +..++++. +||+||| +||
T Consensus 99 i~~-v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 99 IFM-AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK-IALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp EEE-ECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH-HHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred EEE-EccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHH-HHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 322 3443322211 111 11111 00 01123333 4678986 46677786 5999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCccc
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGV 355 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v 355 (372)
|||+.+|+ +|+||| |+|||+..+..++. +|.++. .+|.+||++||+++.. +.++.+|+.+
T Consensus 177 raL~~~p~--lLlLDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 177 QMAVLEPE--LCILDESDSGLDIDALKVVAD--------GVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp HHHHHCCS--EEEEESTTTTCCHHHHHHHHH--------HHHTTC--CSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred HHHHhCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 99999999 999999 99999999988887 888885 4588999999998754 3456788876
Q ss_pred C
Q 017380 356 E 356 (372)
Q Consensus 356 ~ 356 (372)
.
T Consensus 245 ~ 245 (267)
T 2zu0_C 245 K 245 (267)
T ss_dssp E
T ss_pred E
Confidence 4
No 45
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=3.2e-27 Score=220.78 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=135.0
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.+++++||++++|++++|+||||||||||+++|+|+++|+ |+|.+.+.+..... ...+....++ +.+.....
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----~~~~~~~i~~---v~q~~~~~ 85 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----ATKLALHRAY---LSQQQTPP 85 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC----HHHHHHHEEE---ECSCCCCC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC----HHHHhceEEE---ECCCCccC
Confidence 3578999999999999999999999999999999999999 99999876653221 1122333332 44444333
Q ss_pred HHHHHHHHHHhhh-----hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCC-----ceEEEEcC-CCCC
Q 017380 238 ASSVLSQAVKRGK-----EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPN-----EILLVLDG-TTGL 303 (372)
Q Consensus 238 ~~~~~~~~~~~~~-----~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~-----~~lLvLDE-tsgl 303 (372)
+...+.+.+.... .+.++. +++.+|+.+..++.+.+||+||+ +||||++.+|+ +-+|+||| |+||
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 86 FATPVWHYLTLHQHDKTRTELLND-VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp TTCBHHHHHHTTCSSTTCHHHHHH-HHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred CCCcHHHHHHHhhccCCcHHHHHH-HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 3223444443321 122333 34688998888899999999999 99999999886 34899999 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc------eeeeccCccc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p------i~~i~~Ge~v 355 (372)
|+..+..+++ ++.++. .+|.+||++||+++.. +.++..|+.+
T Consensus 165 D~~~~~~l~~--------~l~~l~--~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 165 DVAQQSALDK--------ILSALS--QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp CHHHHHHHHH--------HHHHHH--HTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999988887 888885 3488999999998764 5577888776
No 46
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=9e-28 Score=230.69 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=136.5
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
++|...|+ ...+++++||++++|++++||||||||||||+++|+|+++|++|+|.+++.|..... ...+...++
T Consensus 57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~----~~~~r~~i~- 131 (306)
T 3nh6_A 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT----QASLRSHIG- 131 (306)
T ss_dssp EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC----HHHHHHTEE-
T ss_pred EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC----HHHHhcceE-
Confidence 46677774 345689999999999999999999999999999999999999999999887764332 122333333
Q ss_pred ceeEeccccccHHHHHHHHHHhhhh----hchHHHHHHhhC-----------CCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTSG-----------RLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~G-----------~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+ +.+.+..++. .+.+++..... ..+...+ +.++ +.....+...+|||||| +|||||+.
T Consensus 132 -~-v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~~-~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 132 -V-VPQDTVLFND-TIADNIRYGRVTAGNDEVEAAA-QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp -E-ECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHHH-HHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred -E-EecCCccCcc-cHHHHHHhhcccCCHHHHHHHH-HHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 3 5555544332 33444432211 1111111 2233 33334455679999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+ +||||| |++||+..+..++. .|.++. ++.|+|+|+|++... |.++.+|+.+++
T Consensus 208 ~p~--iLlLDEPts~LD~~~~~~i~~--------~l~~l~---~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 208 APG--IILLDEATSALDTSNERAIQA--------SLAKVC---ANRTTIVVAHRLSTVVNADQILVIKDGCIVER 269 (306)
T ss_dssp CCS--EEEEECCSSCCCHHHHHHHHH--------HHHHHH---TTSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred CCC--EEEEECCcccCCHHHHHHHHH--------HHHHHc---CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 999 999999 99999999988887 777764 368999999998764 667888988743
No 47
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=5e-28 Score=225.32 Aligned_cols=185 Identities=15% Similarity=0.212 Sum_probs=131.4
Q ss_pred HHHHh-ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcce
Q 017380 150 VLDLL-TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEI 228 (372)
Q Consensus 150 l~~~~-~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~ 228 (372)
+.+.| +...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... + +... +.+
T Consensus 7 l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~---~~~~--i~~ 80 (243)
T 1mv5_A 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE-N---WRSQ--IGF 80 (243)
T ss_dssp EEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS-C---CTTT--CCE
T ss_pred EEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHH-H---HHhh--EEE
Confidence 34556 445678999999999999999999999999999999999999999999987665321110 0 1112 222
Q ss_pred eEeccccccHHHHHHHHHHhh-h----hhchHHHHHHhhCCCccch-----------hhHhHHHHHHH---HHHHHHhCC
Q 017380 229 VVAEGEKAKASSVLSQAVKRG-K----EQGFDIVLCDTSGRLHTNY-----------SLMEELVACKK---AVGKVVNGA 289 (372)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~----~~~~d~vl~dt~G~~~~~~-----------~~~~eLS~G~r---~iAral~~~ 289 (372)
+.+.+...+. .+.+.+... . ...+..+ ++.+|+.+..+ +.+.+||+||+ +||||++.+
T Consensus 81 -v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 -VSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQV-LDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp -ECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHH-HHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred -EcCCCccccc-cHHHHHhhhccCCCCHHHHHHH-HHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 4444333222 333333221 0 1112222 24556654433 34579999999 999999999
Q ss_pred CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 290 PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 290 P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
|+ +|+||| |+|||+..+..+++ ++.++. +|.++|++||+++.. +.++.+|+.+.
T Consensus 158 p~--lllLDEPts~LD~~~~~~i~~--------~l~~~~---~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 158 PK--ILMLDEATASLDSESESMVQK--------ALDSLM---KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp CS--EEEEECCSCSSCSSSCCHHHH--------HHHHHH---TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred CC--EEEEECCcccCCHHHHHHHHH--------HHHHhc---CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99 999999 99999999988887 777774 378999999998753 56778888764
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=9.3e-27 Score=216.03 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=119.3
Q ss_pred HHHHhc--cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLT--KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~--~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.+.|+ ...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. .+.
T Consensus 9 l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~----i~~-------------- 70 (237)
T 2cbz_A 9 ATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS----VAY-------------- 70 (237)
T ss_dssp EEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC----EEE--------------
T ss_pred EEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----EEE--------------
Confidence 445565 345789999999999999999999999999999999999999999999651 111
Q ss_pred eeEeccccccHHHHHHHHHHhhh---hhchHHH-----HHHhhCCCc-----cchhhHhHHHHHHH---HHHHHHhCCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGK---EQGFDIV-----LCDTSGRLH-----TNYSLMEELVACKK---AVGKVVNGAPN 291 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~v-----l~dt~G~~~-----~~~~~~~eLS~G~r---~iAral~~~P~ 291 (372)
+.+.+... ...+.+.+.... ......+ +.+.++..+ ..++.+.+||+||+ +||||++.+|+
T Consensus 71 --v~Q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 71 --VPQQAWIQ-NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp --ECSSCCCC-SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred --EcCCCcCC-CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 11111100 001111111100 0000111 111223322 23567889999999 99999999999
Q ss_pred ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 292 EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 292 ~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+||| |+|||+..+..++. ++.+.....+|.++|++||+++.. +.++.+|+.+.
T Consensus 148 --lllLDEPts~LD~~~~~~i~~--------~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 148 --IYLFDDPLSAVDAHVGKHIFE--------NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp --EEEEESTTTTSCHHHHHHHHH--------HTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred --EEEEeCcccccCHHHHHHHHH--------HHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 999999 99999999988887 553211113478999999998864 45667787663
No 49
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=1e-26 Score=218.68 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=130.8
Q ss_pred HHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 149 SVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 149 ~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
++.+.|+. ..+++++||++++|++++|+||||||||||+++|+|+++| +|+|.+.+.+..... ...+...
T Consensus 22 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~----~~~~~~~-- 94 (260)
T 2ghi_A 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN----RNSIRSI-- 94 (260)
T ss_dssp EEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC----HHHHHTT--
T ss_pred EEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC----HHHHhcc--
Confidence 45566754 2478999999999999999999999999999999999987 799999877653221 1122222
Q ss_pred cceeEeccccccHHHHHHHHHHhhh----hhchHHHHHHhhCCCcc-----------chhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK----EQGFDIVLCDTSGRLHT-----------NYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~vl~dt~G~~~~-----------~~~~~~eLS~G~r---~iAral~ 287 (372)
+.+ +.+.+...+. .+.+.+.... ...+... ++.+|+.+. .++.+.+||+||+ +||||++
T Consensus 95 i~~-v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~-l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGI-VPQDTILFNE-TIKYNILYGKLDATDEEVIKA-TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEE-ECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHH-HHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEE-EcCCCccccc-CHHHHHhccCCCCCHHHHHHH-HHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 323 4454433332 3344443221 1111222 234444322 2345679999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |++||+..+..++. ++.++. ++.++|++||+++.. +.++..|+.+.
T Consensus 172 ~~p~--lllLDEPts~LD~~~~~~i~~--------~l~~l~---~~~tviivtH~~~~~~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 172 KDPK--IVIFDEATSSLDSKTEYLFQK--------AVEDLR---KNRTLIIIAHRLSTISSAESIILLNKGKIVE 233 (260)
T ss_dssp HCCS--EEEEECCCCTTCHHHHHHHHH--------HHHHHT---TTSEEEEECSSGGGSTTCSEEEEEETTEEEE
T ss_pred cCCC--EEEEECccccCCHHHHHHHHH--------HHHHhc---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999 999999 99999999988877 788774 378999999998864 55677887763
No 50
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=9e-27 Score=230.57 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=141.2
Q ss_pred HHHHHHh--ccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLL--TKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~--~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
++|.+.| +...+++++||++++|++++|+||||||||||+++|+|+++ ++|+|.+.+.|...... ..+.+.++
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~----~~~rr~ig 97 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL----EQWRKAFG 97 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH----HHHHHTEE
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh----HHHhCCEE
Confidence 5677888 55678999999999999999999999999999999999998 88999998877643321 12223333
Q ss_pred cceeEeccccccHHHHHHHHHHhh---hhhchHHHHHHhhCCCccchhhHhH-----------HHHHHH---HHHHHHhC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRG---KEQGFDIVLCDTSGRLHTNYSLMEE-----------LVACKK---AVGKVVNG 288 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vl~dt~G~~~~~~~~~~e-----------LS~G~r---~iAral~~ 288 (372)
+ +++.+...+. .+++.+... ..+.+..+ ++.+|+.+..++++.+ |||||| +|||||+.
T Consensus 98 --~-v~Q~~~lf~~-tv~enl~~~~~~~~~~v~~~-l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 98 --V-IPQKVFIFSG-TFRKNLDPNAAHSDQEIWKV-ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp --E-ESCCCCCCSE-EHHHHHCTTCCSCHHHHHHH-HHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred --E-EcCCcccCcc-CHHHHhhhccccCHHHHHHH-HHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 3 5555554443 344444311 11223333 4678888888888888 999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+|+ +|+||| |++||+..+.++.. .|.++. .+.++|+++|++... +.++..|+.+.
T Consensus 173 ~P~--lLLLDEPts~LD~~~~~~l~~--------~l~~~~---~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 173 KAK--ILLLDEPSAHLDPVTYQIIRR--------TLKQAF---ADCTVILCEARIEAMLECDQFLVIEENKVRQ 233 (390)
T ss_dssp TCC--EEEEESHHHHSCHHHHHHHHH--------HHHTTT---TTSCEEEECSSSGGGTTCSEEEEEETTEEEE
T ss_pred CCC--EEEEeCCccCCCHHHHHHHHH--------HHHHHh---CCCEEEEEEcCHHHHHhCCEEEEEECCEEEE
Confidence 999 999999 99999999988777 666653 478999999998653 56778888763
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=1.5e-26 Score=213.54 Aligned_cols=172 Identities=14% Similarity=0.140 Sum_probs=116.5
Q ss_pred HHHHhc--cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 150 VLDLLT--KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 150 l~~~~~--~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+.+.|+ ...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. .+.
T Consensus 12 l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----i~~-------------- 73 (229)
T 2pze_A 12 VTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISF-------------- 73 (229)
T ss_dssp EEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC----EEE--------------
T ss_pred EEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE----EEE--------------
Confidence 445563 345789999999999999999999999999999999999999999999651 111
Q ss_pred eeEeccccccHHHHHHHHHHhh------------hhhchHHHHHHhhCCC--ccchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRG------------KEQGFDIVLCDTSGRL--HTNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~d~vl~dt~G~~--~~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+.+...+. .+.+.+... ........+ +..... ...++.+.+||+||| +||||++.+|
T Consensus 74 --v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 74 --CSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp --ECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH-TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred --EecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH-HhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 1111111111 111221110 001111111 111110 112334689999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+ +|+||| |+|+|+..+..+++. ++.++. ++.++|++||+++.. +.++.+|+.+
T Consensus 150 ~--lllLDEPts~LD~~~~~~i~~~-------l~~~~~---~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 150 D--LYLLDSPFGYLDVLTEKEIFES-------CVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSY 208 (229)
T ss_dssp S--EEEEESTTTTSCHHHHHHHHHH-------CCCCCT---TTSEEEEECCCHHHHHHCSEEEEEETTEEE
T ss_pred C--EEEEECcccCCCHHHHHHHHHH-------HHHHhh---CCCEEEEEcCChHHHHhCCEEEEEECCEEE
Confidence 9 999999 999999999877762 234443 378999999998653 5567788776
No 52
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.3e-26 Score=218.39 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=127.7
Q ss_pred HHHhcc----CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 151 LDLLTK----KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 151 ~~~~~~----~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
.+.|+. ..+++++||+++ |++++|+||||||||||+++|+|++ |++|+|.+.+.+.... . .+..+
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~------~~~~i 76 (263)
T 2pjz_A 8 GITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---R------NYIRY 76 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---S------CCTTE
T ss_pred EEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---H------Hhhhe
Confidence 345554 456889999999 9999999999999999999999999 9999999977664321 0 01112
Q ss_pred c-eeEeccccccHHHHHHHHHHhh------hhhchHHHHHHhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEE
Q 017380 227 E-IVVAEGEKAKASSVLSQAVKRG------KEQGFDIVLCDTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILL 295 (372)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lL 295 (372)
. + +.+.+.. ...+.+.+... ..+.++.+ ++.+|+. +..++++.+||+||+ +||||++.+|+ +|
T Consensus 77 ~~~-v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~--ll 150 (263)
T 2pjz_A 77 STN-LPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEM-LKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE--IV 150 (263)
T ss_dssp EEC-CGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHH-HHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCS--EE
T ss_pred EEE-eCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHH-HHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC--EE
Confidence 2 1 3333322 11122222111 11223334 4688998 888999999999999 99999999999 99
Q ss_pred EEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-------eeeeccCccc
Q 017380 296 VLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-------VKFVGVGEGV 355 (372)
Q Consensus 296 vLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-------i~~i~~Ge~v 355 (372)
+||| |+|||+..+..+++ ++.++. . ++|++||+++.. +.++.+|+.+
T Consensus 151 lLDEPts~LD~~~~~~l~~--------~L~~~~--~---tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISR--------YIKEYG--K---EGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp EEECTTTTCCHHHHHHHHH--------HHHHSC--S---EEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred EEECCccccCHHHHHHHHH--------HHHHhc--C---cEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 9999 99999999988887 777774 2 999999997653 3455677665
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=2.1e-25 Score=231.87 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=137.3
Q ss_pred HHHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 147 KNSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 147 ~~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
.+++...|++ ..+++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... ...+.+..
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~~~~i 419 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK----LTNLRRHF 419 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC----HHHHhcCe
Confidence 3567777864 45789999999999999999999999999999999999999999999887753221 12222333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh-----hhchHHHHHHhhCCCccc-----------hhhHhHHHHHHH---HHHHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK-----EQGFDIVLCDTSGRLHTN-----------YSLMEELVACKK---AVGKV 285 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vl~dt~G~~~~~-----------~~~~~eLS~G~r---~iAra 285 (372)
+ + +.+.+...+. .+.+++.... .+.+...+ +.+|+.+.. .+...+|||||| +||||
T Consensus 420 ~--~-v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 420 A--L-VSQNVHLFND-TIANNIAYAAEGEYTREQIEQAA-RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred E--E-EcCCCccccc-cHHHHHhccCCCCCCHHHHHHHH-HHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 3 3 5555544433 4455543321 11122222 344544332 334579999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
++.+|+ +|+||| |+++|+..+..+.+ .+.++. +|.|+|+++|++... +.++.+|+.++
T Consensus 495 l~~~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 495 LLRDAP--VLILDEATSALDTESERAIQA--------ALDELQ---KNKTVLVIAHRLSTIEQADEILVVDEGEIIE 558 (582)
T ss_pred HHcCCC--EEEEECccccCCHHHHHHHHH--------HHHHHc---CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 999999 999999 99999999988877 777764 388999999998753 56778888774
No 54
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=2.9e-25 Score=230.86 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=136.4
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ..+++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... ...+.+..+
T Consensus 345 ~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~~~~i~ 420 (582)
T 3b60_A 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT----LASLRNQVA 420 (582)
T ss_dssp EEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC----HHHHHHTEE
T ss_pred EEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC----HHHHHhhCe
Confidence 456667763 45789999999999999999999999999999999999999999999887753321 122333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhh-----hhchHHHHHHhhCCCcc-----------chhhHhHHHHHHH---HHHHHH
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK-----EQGFDIVLCDTSGRLHT-----------NYSLMEELVACKK---AVGKVV 286 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vl~dt~G~~~~-----------~~~~~~eLS~G~r---~iAral 286 (372)
+ +.+.+...+. .+.+.+.... .+.+..++ +.+|+.+. ..+...+|||||| +||||+
T Consensus 421 --~-v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 421 --L-VSQNVHLFND-TVANNIAYARTEEYSREQIEEAA-RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp --E-ECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHH-HTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred --E-EccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHH-HHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3 5555544433 3445544321 11122222 34444333 2334579999999 999999
Q ss_pred hCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 287 NGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 287 ~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
+.+|+ +|+||| |+++|+..+..+.+ .+.++. +|.|+|+++|++... +.++.+|+.++
T Consensus 496 ~~~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 496 LRDSP--ILILDEATSALDTESERAIQA--------ALDELQ---KNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558 (582)
T ss_dssp HHCCS--EEEEETTTSSCCHHHHHHHHH--------HHHHHH---TTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred HhCCC--EEEEECccccCCHHHHHHHHH--------HHHHHh---CCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999 999999 99999999988877 777774 378999999998764 56778888774
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=2.4e-25 Score=231.72 Aligned_cols=189 Identities=13% Similarity=0.179 Sum_probs=136.3
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ..+++|+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... ...+...++
T Consensus 345 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~----~~~~r~~i~ 420 (587)
T 3qf4_A 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK----LKDLRGHIS 420 (587)
T ss_dssp EEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC----HHHHHHHEE
T ss_pred EEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC----HHHHHhheE
Confidence 456667743 45789999999999999999999999999999999999999999999888764332 122333433
Q ss_pred cceeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+ +.+.+...+. .+.+++.... .......+.... |+....++...+|||||| +||||++.
T Consensus 421 ~---v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 421 A---VPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp E---ECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred E---ECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 3 5555443332 3344432211 111111121110 344444567789999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+ +|+||| |+++|+..+..+++ .+.++. +|.|+|+|+|++... +.++.+|+.+++
T Consensus 497 ~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 497 KPK--VLILDDCTSSVDPITEKRILD--------GLKRYT---KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp CCS--EEEEESCCTTSCHHHHHHHHH--------HHHHHS---TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CCC--EEEEECCcccCCHHHHHHHHH--------HHHHhC---CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence 999 999999 99999999988887 666663 489999999998764 667888988743
No 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=1e-24 Score=208.11 Aligned_cols=171 Identities=14% Similarity=0.153 Sum_probs=111.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE 227 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~ 227 (372)
+++... ...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ++.
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----i~~-------------- 103 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISF-------------- 103 (290)
T ss_dssp --------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC----EEE--------------
T ss_pred EEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----EEE--------------
Confidence 345443 245789999999999999999999999999999999999999999998541 111
Q ss_pred eeEeccccccHHHHHHHHHHhhhh---hchHHHHHHhhCCCc-----------cchhhHhHHHHHHH---HHHHHHhCCC
Q 017380 228 IVVAEGEKAKASSVLSQAVKRGKE---QGFDIVLCDTSGRLH-----------TNYSLMEELVACKK---AVGKVVNGAP 290 (372)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~vl~dt~G~~~-----------~~~~~~~eLS~G~r---~iAral~~~P 290 (372)
+.+.+...+. .+.+.+. ... ...... .+..++.+ ..+..+.+||+||+ +||||++.+|
T Consensus 104 --v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 104 --CSQNSWIMPG-TIKENII-GVSYDEYRYRSV-IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp --ECSSCCCCSS-BHHHHHH-TTCCCHHHHHHH-HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred --EeCCCccCcc-cHHHHhh-CcccchHHHHHH-HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 1111111111 1111111 000 000001 11122211 12344679999999 9999999999
Q ss_pred CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCccc
Q 017380 291 NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 291 ~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v 355 (372)
+ +|+||| |+|||+..+..+++. ++.++. +|.+||++||+++.. +.++.+|+.+
T Consensus 179 ~--lllLDEPts~LD~~~~~~i~~~-------ll~~~~---~~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 179 D--LYLLDSPFGYLDVLTEKEIFES-------CVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp S--EEEEESTTTTCCHHHHHHHHHH-------CCCCCT---TTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred C--EEEEECCcccCCHHHHHHHHHH-------HHHHhh---CCCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 9 999999 999999999877762 234443 478999999998753 5577788776
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=1.6e-24 Score=225.15 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=134.4
Q ss_pred HHHHHHhcc--CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhC
Q 017380 148 NSVLDLLTK--KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 148 ~~l~~~~~~--~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
+++...|++ ..+++|+||++++|++++|+|||||||||++++|+|+++|++|+|.++|.|..... ...+.+..+
T Consensus 343 ~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~r~~i~ 418 (578)
T 4a82_A 343 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL----TGSLRNQIG 418 (578)
T ss_dssp EEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC----HHHHHHTEE
T ss_pred EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----HHHHhhheE
Confidence 456666753 34689999999999999999999999999999999999999999999887764322 122333333
Q ss_pred cceeEeccccccHHHHHHHHHHhhhh----hchHHHHHHhh-----------CCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTS-----------GRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~-----------G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
+ +.+.+...+. .+.+++..... ++....+ +.+ |+.....+...+|||||| +||||++
T Consensus 419 --~-v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~-~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 419 --L-VQQDNILFSD-TVKENILLGRPTATDEEVVEAA-KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp --E-ECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHH-HHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred --E-EeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHH-HHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 3 5555544433 33444432211 1111111 222 233333455679999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
.+|+ +|+||| |+++|+..+..+.+ .+.++. ++.|+|+++|++... +.++.+|+.+++
T Consensus 494 ~~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 494 NNPP--ILILDEATSALDLESESIIQE--------ALDVLS---KDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp HCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHHT---TTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCC--EEEEECccccCCHHHHHHHHH--------HHHHHc---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999 999999 99999999877776 676664 468999999999875 567788887743
No 58
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.6e-24 Score=223.30 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=136.6
Q ss_pred HHHHHHhcc-CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 148 NSVLDLLTK-KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 148 ~~l~~~~~~-~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+++...|++ ..+++|+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... ...+.+..++
T Consensus 358 ~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~r~~i~~ 433 (598)
T 3qf4_B 358 KNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK----RSSLRSSIGI 433 (598)
T ss_dssp EEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC----HHHHHHHEEE
T ss_pred EEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC----HHHHHhceEE
Confidence 456667754 45789999999999999999999999999999999999999999999887764322 2223334433
Q ss_pred ceeEeccccccHHHHHHHHHHhhhh----hchHHHHHHhhC-----------CCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 227 EIVVAEGEKAKASSVLSQAVKRGKE----QGFDIVLCDTSG-----------RLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~vl~dt~G-----------~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
+.+.+...+. .+.+++..... +.+...+ +.++ +.....+...+|||||| +||||++.
T Consensus 434 ---v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 434 ---VLQDTILFST-TVKENLKYGNPGATDEEIKEAA-KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp ---ECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHT-TTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ---EeCCCccccc-cHHHHHhcCCCCCCHHHHHHHH-HHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 5555544432 34444432211 1111111 1222 22233455578999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
+|+ +|+||| |+++|+..+..+.+ .+.++. +|.|+|+|+|++... +.++.+|+.+++
T Consensus 509 ~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 509 NPK--ILILDEATSNVDTKTEKSIQA--------AMWKLM---EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp CCS--EEEECCCCTTCCHHHHHHHHH--------HHHHHH---TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CCC--EEEEECCccCCCHHHHHHHHH--------HHHHHc---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999 999999 99999999988877 677764 488999999999864 667888988754
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=1.5e-24 Score=223.30 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=126.0
Q ss_pred HHHHHHHHhccC-CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE---------Eeeccccchhhhh
Q 017380 146 LKNSVLDLLTKK-GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL---------MAAGDTFRAAASD 215 (372)
Q Consensus 146 l~~~l~~~~~~~-~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~---------l~~~d~~r~~a~e 215 (372)
+.++|.+.|+.. .++.++| ++.+|++++|+||||||||||+++|+|+++|++|++. +.+.+. . ..
T Consensus 23 ~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~-~--~~- 97 (538)
T 1yqt_A 23 LEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL-Q--NY- 97 (538)
T ss_dssp -CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH-H--HH-
T ss_pred HhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH-H--HH-
Confidence 445777888765 3678888 8999999999999999999999999999999998841 111110 0 00
Q ss_pred HHHHHHHhhCcceeEeccccccHH---HHHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhC
Q 017380 216 QLEIWAERTGCEIVVAEGEKAKAS---SVLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNG 288 (372)
Q Consensus 216 ql~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~ 288 (372)
.........++.. +.+.....+. ..+.+.+.... ...+..++ +.+|+.+..++++.+||+||+ +||+||+.
T Consensus 98 ~~~~~~~~~~~~~-~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l-~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 98 FEKLKNGEIRPVV-KPQYVDLIPKAVKGKVIELLKKADETGKLEEVV-KALELENVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHHHTTSCCCEE-ECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHH-HHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhhh-hhhhhhhcchhhhccHHHHHhhhhHHHHHHHHH-HHcCCChhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0001111122222 2221111110 01222222111 23344444 788998888999999999999 99999999
Q ss_pred CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 289 APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 289 ~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|+ +||||| |++||+..+..++. +|.++. ..|++||+||||++..
T Consensus 176 ~P~--lLlLDEPTs~LD~~~~~~l~~--------~L~~l~--~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 176 NAT--FYFFDEPSSYLDIRQRLNAAR--------AIRRLS--EEGKSVLVVEHDLAVL 221 (538)
T ss_dssp CCS--EEEEESTTTTCCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCHHHH
T ss_pred CCC--EEEEECCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEeCCHHHH
Confidence 999 999999 99999999988888 888886 3589999999998765
No 60
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=2.8e-24 Score=223.97 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=135.0
Q ss_pred HHHHHHhccC---CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~~---~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++...|++. .+++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... ...+.+.+
T Consensus 345 ~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~~~~i 420 (595)
T 2yl4_A 345 KNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN----PVWLRSKI 420 (595)
T ss_dssp EEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC----HHHHHHSE
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC----HHHHHhce
Confidence 4566677542 3688999999999999999999999999999999999999999999887763322 12233333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh-------hhchHHHHHHhhCCCccc-----------hhhHhHHHHHHH---HHH
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK-------EQGFDIVLCDTSGRLHTN-----------YSLMEELVACKK---AVG 283 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~d~vl~dt~G~~~~~-----------~~~~~eLS~G~r---~iA 283 (372)
+ + +.+.+...+. .+.+++.... .+.++.++ +.+|+.+.. .+...+|||||| +||
T Consensus 421 ~--~-v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 421 G--T-VSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVA-EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp E--E-ECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHH-HHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred E--E-EccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHH-HHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 3 3 5555544432 4455553321 11122222 455543322 233478999999 999
Q ss_pred HHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 284 KVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 284 ral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
||++.+|+ +|+||| |+++|+..+..+.+ .+.++. ++.|+|+++|++... +.++.+|+.++
T Consensus 496 ral~~~p~--illlDEpts~LD~~~~~~i~~--------~l~~~~---~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 496 RALLKNPK--ILLLDEATSALDAENEYLVQE--------ALDRLM---DGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp HHHHHCCS--EEEEECCCSSCCHHHHHHHHH--------HHHHHH---TTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred HHHHcCCC--EEEEECcccCCCHHHHHHHHH--------HHHHHh---cCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999 999999 99999999988877 777774 378999999998753 66778888763
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=5e-24 Score=222.12 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=126.7
Q ss_pred HHHHHHHhccCC-CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE---------EeeccccchhhhhH
Q 017380 147 KNSVLDLLTKKG-NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL---------MAAGDTFRAAASDQ 216 (372)
Q Consensus 147 ~~~l~~~~~~~~-~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~---------l~~~d~~r~~a~eq 216 (372)
.+++.+.|+... ++.++| ++++|++++|+||||||||||+++|+|+++|++|++. +.+.+. ..
T Consensus 94 ~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~------~~ 166 (607)
T 3bk7_A 94 DEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL------QN 166 (607)
T ss_dssp GGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTH------HH
T ss_pred cCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEeh------hh
Confidence 457788887653 678888 8999999999999999999999999999999998841 111111 00
Q ss_pred H--HHHHHhhCcceeEeccccccHH---HHHHHHHHhhh-hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 217 L--EIWAERTGCEIVVAEGEKAKAS---SVLSQAVKRGK-EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 217 l--~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
. ........+.. ..+.....+. ..+.+.+.... ...++.++ +.+|+.+..++++.+||+||+ +|||||+
T Consensus 167 ~~~~~~~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L-~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 167 YFERLKNGEIRPVV-KPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVV-KELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp HHHHHHHTSCCCEE-ECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHH-HHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcceEE-eechhhhchhhccccHHHHhhhhHHHHHHHHHH-HHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 0 01111122222 2221111110 01223332211 23345544 788999889999999999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.+|+ +|+||| |++||+..+..++. +|.++. ..|.+||+|+||++..
T Consensus 245 ~~P~--lLlLDEPTs~LD~~~~~~l~~--------~L~~l~--~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 245 RKAH--FYFFDEPSSYLDIRQRLKVAR--------VIRRLA--NEGKAVLVVEHDLAVL 291 (607)
T ss_dssp SCCS--EEEEECTTTTCCHHHHHHHHH--------HHHHHH--HTTCEEEEECSCHHHH
T ss_pred cCCC--EEEEECCcccCCHHHHHHHHH--------HHHHHH--hcCCEEEEEecChHHH
Confidence 9999 999999 99999999988887 888886 3489999999998865
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=3.6e-23 Score=212.97 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=111.5
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHH
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSV 241 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~ 241 (372)
..+|++++|++++|+||||||||||+++|+|+++|++|+|.+.+... +...| .........
T Consensus 286 ~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i---~~~~q----------------~~~~~~~~t 346 (538)
T 3ozx_A 286 VDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---SYKPQ----------------RIFPNYDGT 346 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE---EEECS----------------SCCCCCSSB
T ss_pred eccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee---Eeech----------------hcccccCCC
Confidence 34566789999999999999999999999999999999998744322 11100 000000000
Q ss_pred HHHHHHhh------hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 242 LSQAVKRG------KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 242 ~~~~~~~~------~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
+.+.+... ........+++.+|+.+..++++.+|||||+ +|||||+.+|+ +|+||| |+|||+..+..+
T Consensus 347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~--lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD--LYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCS--EEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEeCCccCCCHHHHHHH
Confidence 11111110 0000111233567888888899999999999 99999999999 999999 999999999888
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+. +|.++.. ..|.+||+||||++..
T Consensus 425 ~~--------~l~~l~~-~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 425 AK--------AIKRVTR-ERKAVTFIIDHDLSIH 449 (538)
T ss_dssp HH--------HHHHHHH-HTTCEEEEECSCHHHH
T ss_pred HH--------HHHHHHH-hCCCEEEEEeCCHHHH
Confidence 88 8888853 4588999999999876
No 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=4e-23 Score=215.29 Aligned_cols=152 Identities=20% Similarity=0.122 Sum_probs=111.1
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc----c
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA----K 237 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~----~ 237 (372)
.++|++.+|++++|+||||||||||+++|+|+++|++|+|.+ . .+.+. +.+.... .
T Consensus 374 ~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~---~~i~~----------------v~Q~~~~~~~~t 433 (607)
T 3bk7_A 374 VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-D---LTVAY----------------KPQYIKAEYEGT 433 (607)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-C---CCEEE----------------ECSSCCCCCSSB
T ss_pred ecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-e---eEEEE----------------EecCccCCCCCc
Confidence 344557899999999999999999999999999999999876 1 11111 1111110 0
Q ss_pred HHHHHHHH-H-HhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 238 ASSVLSQA-V-KRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 238 ~~~~~~~~-~-~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
....+... . .......++.++ +.+|+.+..++.+.+|||||+ +|||+|+.+|+ +|+||| |+|||+..+..+
T Consensus 434 v~e~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~--lLlLDEPt~~LD~~~~~~l 510 (607)
T 3bk7_A 434 VYELLSKIDSSKLNSNFYKTELL-KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD--IYLLDEPSAYLDVEQRLAV 510 (607)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTH-HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS--EEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHH-HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC--EEEEeCCccCCCHHHHHHH
Confidence 01111110 0 000111223334 678998888999999999999 99999999999 999999 999999999888
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+. +|.++.. ..|++||++|||++..
T Consensus 511 ~~--------~l~~l~~-~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 511 SR--------AIRHLME-KNEKTALVVEHDVLMI 535 (607)
T ss_dssp HH--------HHHHHHH-HTTCEEEEECSCHHHH
T ss_pred HH--------HHHHHHH-hCCCEEEEEeCCHHHH
Confidence 87 8888742 4589999999998875
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=3.8e-23 Score=212.90 Aligned_cols=152 Identities=20% Similarity=0.091 Sum_probs=110.2
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccc----c
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKA----K 237 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~----~ 237 (372)
.++|++.+|++++|+||||||||||+++|+|+++|++|+|.+ .. +++. +.+.... .
T Consensus 304 ~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~~---~i~~----------------v~Q~~~~~~~~t 363 (538)
T 1yqt_A 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-DL---TVAY----------------KPQYIKADYEGT 363 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-CC---CEEE----------------ECSSCCCCCSSB
T ss_pred eCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-Cc---eEEE----------------EecCCcCCCCCc
Confidence 344556899999999999999999999999999999999875 11 1111 1111110 0
Q ss_pred HHHHHHHH-HH-hhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 238 ASSVLSQA-VK-RGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 238 ~~~~~~~~-~~-~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
....+... .. ......++. +++.+|+.+..++++.+|||||+ +|||+|+.+|+ +||||| |+|||+..+..+
T Consensus 364 v~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~--lLlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 364 VYELLSKIDASKLNSNFYKTE-LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDAD--IYLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp HHHHHHHHHHHHHTCHHHHHH-TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCS--EEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHH-HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC--EEEEeCCcccCCHHHHHHH
Confidence 01111110 00 001111233 34677887778899999999999 99999999999 999999 999999999888
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+. +|.++.. +.|++||++|||++..
T Consensus 441 ~~--------~l~~l~~-~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 441 SR--------AIRHLME-KNEKTALVVEHDVLMI 465 (538)
T ss_dssp HH--------HHHHHHH-HHTCEEEEECSCHHHH
T ss_pred HH--------HHHHHHH-hCCCEEEEEeCCHHHH
Confidence 87 8888742 3589999999998875
No 65
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-22 Score=210.51 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=120.1
Q ss_pred HHHHHHhccCC-CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch--hhh--hHHHHH--
Q 017380 148 NSVLDLLTKKG-NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA--AAS--DQLEIW-- 220 (372)
Q Consensus 148 ~~l~~~~~~~~-~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~--~a~--eql~~~-- 220 (372)
+++.+.|+... .+.+++ .+.+|++++|+||||||||||+++|+|+++|++|+|.. ...++. ... ..+..+
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~--~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDD--PPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCC--SSCHHHHHHHTTTSTHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEec--ccchhhhhheecChhhhhhhh
Confidence 35677776543 233333 47899999999999999999999999999999998732 111110 000 001111
Q ss_pred ---HHhhCcceeEeccccccHH------HHHHHHHHhhh---hhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHH
Q 017380 221 ---AERTGCEIVVAEGEKAKAS------SVLSQAVKRGK---EQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKV 285 (372)
Q Consensus 221 ---~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAra 285 (372)
........ ..+.....+. ..+.+.+.... ...++.+ ++.+|+.+..++.+.+||+||+ +||+|
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~-l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 158 KMLEDDIKAII-KPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRY-IKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHHTSCCCEE-ECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHH-HHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhh-chhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHH-HHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 11111111 1111110000 01112221111 1223444 4788999999999999999999 99999
Q ss_pred HhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 286 VNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 286 l~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
|+.+|+ +|+||| |++||+..+..++. ++.++. ++|.+||+|+|+++..
T Consensus 236 L~~~p~--llllDEPts~LD~~~~~~l~~--------~l~~l~--~~g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 236 CVQEAD--VYMFDEPSSYLDVKQRLNAAQ--------IIRSLL--APTKYVICVEHDLSVL 284 (608)
T ss_dssp HHSCCS--EEEEECTTTTCCHHHHHHHHH--------HHHGGG--TTTCEEEEECSCHHHH
T ss_pred HHhCCC--EEEEECcccCCCHHHHHHHHH--------HHHHHH--hCCCEEEEEeCCHHHH
Confidence 999999 999999 99999999988887 888886 4589999999998865
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.3e-22 Score=208.82 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=110.0
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE-----------EeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL-----------MAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~-----------l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
+++|++++|+||||||||||+++|+|+++|+.|+|. +.+.+.... . ...+....++.. ..+...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~--~--~~~~~~~~~~~~-~~~~~~ 96 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNY--F--KELYSNELKIVH-KIQYVE 96 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHH--H--HHHHTTCCCEEE-ECSCTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHH--H--HHHhhcccchhh-ccchhh
Confidence 358999999999999999999999999999999872 211111000 0 000111112111 111100
Q ss_pred ccH---HHHHHHHHHhhhh-hchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHH
Q 017380 236 AKA---SSVLSQAVKRGKE-QGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLP 307 (372)
Q Consensus 236 ~~~---~~~~~~~~~~~~~-~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~ 307 (372)
..+ ...+.+.+..... ...+.+ ++.+|+.+..++.+.+||+||+ +|||||+.+|+ +|+||| |++||+..
T Consensus 97 ~~~~~~~~~v~~~l~~~~~~~~~~~~-l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~--illlDEPts~LD~~~ 173 (538)
T 3ozx_A 97 YASKFLKGTVNEILTKIDERGKKDEV-KELLNMTNLWNKDANILSGGGLQRLLVAASLLREAD--VYIFDQPSSYLDVRE 173 (538)
T ss_dssp GGGTTCCSBHHHHHHHHCCSSCHHHH-HHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCS--EEEEESTTTTCCHHH
T ss_pred hhhhhccCcHHHHhhcchhHHHHHHH-HHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC--EEEEECCcccCCHHH
Confidence 000 0011222222222 234444 4788999888999999999999 99999999999 999999 99999999
Q ss_pred HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 308 QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 308 ~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..++. +|.++. . |.+||+|+|+++..
T Consensus 174 ~~~l~~--------~l~~l~--~-g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 174 RMNMAK--------AIRELL--K-NKYVIVVDHDLIVL 200 (538)
T ss_dssp HHHHHH--------HHHHHC--T-TSEEEEECSCHHHH
T ss_pred HHHHHH--------HHHHHh--C-CCEEEEEEeChHHH
Confidence 988887 888885 3 89999999999764
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=6.1e-22 Score=222.60 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=136.8
Q ss_pred HHHHHHHhccC---CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh
Q 017380 147 KNSVLDLLTKK---GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER 223 (372)
Q Consensus 147 ~~~l~~~~~~~---~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~ 223 (372)
.+++...|... .+++|+||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|..... +..+..+
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~----~~~lR~~ 1154 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN----PEHTRSQ 1154 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC----HHHHHTT
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC----HHHHHhh
Confidence 35667778532 4689999999999999999999999999999999999999999999998874432 3344444
Q ss_pred hCcceeEeccccccHHHHHHHHHH---------------hhhhhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHH
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVK---------------RGKEQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGK 284 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAr 284 (372)
+++ ++|++...... +++++. ..+..+.+..+.... |+..........||+||| +|||
T Consensus 1155 i~~---V~Qdp~LF~gT-IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1155 IAI---VSQEPTLFDCS-IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEE---ECSSCCCCSEE-HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred eEE---ECCCCEeeCcc-HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 443 56655443322 222221 111122222232111 232233344567999999 9999
Q ss_pred HHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 285 VVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
|++.+|+ +||||| |+++|+.+...+.+ .|.++ .++.|+|+|+|++.-. |.++.+|+.+|.
T Consensus 1231 Allr~~~--ILiLDEaTSaLD~~tE~~Iq~--------~l~~~---~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1231 ALVRNPK--ILLLDEATSALDTESEKVVQE--------ALDRA---REGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHHSCCS--EEEEESCCCSTTSHHHHHHHH--------HHTTT---SSSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HHHhCCC--EEEEeCccccCCHHHHHHHHH--------HHHHH---cCCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999 999999 99999998877666 55544 4689999999998764 778999998853
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=1.3e-21 Score=219.30 Aligned_cols=188 Identities=18% Similarity=0.167 Sum_probs=132.6
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++...|+. ..+++|+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|..... ...+...+
T Consensus 391 ~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~----~~~~r~~i 466 (1284)
T 3g5u_A 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN----VRYLREII 466 (1284)
T ss_dssp EEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC----HHHHHHHE
T ss_pred EEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC----HHHHHhhe
Confidence 466777864 24789999999999999999999999999999999999999999999887764332 22333333
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhh-------------hchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKE-------------QGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
++ +.|.+...+. .+.+++..... ...+..+.... |..........+|||||| +||||++
T Consensus 467 ~~---v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 467 GV---VSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EE---ECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred EE---EcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 33 5565544433 23333332111 11111121111 222223345568999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +|+||| |+++|+..+..+.. .+.++ .+|.|+|+|+|++... +..+.+|+.++
T Consensus 543 ~~p~--iliLDEpts~LD~~~~~~i~~--------~l~~~---~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 543 RNPK--ILLLDEATSALDTESEAVVQA--------ALDKA---REGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp HCCS--EEEEESTTCSSCHHHHHHHHH--------HHHHH---HTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred cCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHH---cCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999 999999 99999998866665 56555 3489999999998764 66778888764
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-21 Score=202.91 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=109.3
Q ss_pred CCccceeccCC-----eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 160 KTELQLGYRKP-----AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 160 ~~~isl~i~~g-----~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
+++++|++.+| ++++|+||||||||||+++|+|+++|++|+..- . . ++.+ +.+..
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~-~---~---------------~i~~-~~q~~ 422 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP-K---L---------------NVSM-KPQKI 422 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCC-S---C---------------CEEE-ECSSC
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCcc-C---C---------------cEEE-ecccc
Confidence 45788988887 789999999999999999999999999886210 0 0 0000 11100
Q ss_pred cc----cHHHHHHHHHHh-h-hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCC
Q 017380 235 KA----KASSVLSQAVKR-G-KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLN 304 (372)
Q Consensus 235 ~~----~~~~~~~~~~~~-~-~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD 304 (372)
.. .....+...... . .....+. +++.+|+.+..++.+.+|||||+ +|||+|+.+|+ +|+||| |+|||
T Consensus 423 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~--lLlLDEPT~gLD 499 (608)
T 3j16_B 423 APKFPGTVRQLFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPAD--IYLIDEPSAYLD 499 (608)
T ss_dssp CCCCCSBHHHHHHHHCSSTTTSHHHHHH-THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCS--EEEECCTTTTCC
T ss_pred cccCCccHHHHHHHHhhcccccHHHHHH-HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC--EEEEECCCCCCC
Confidence 00 000000000000 0 0011122 34677898888999999999999 99999999999 999999 99999
Q ss_pred HHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 305 MLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 305 ~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..+..+++ +|.++.. +.|.+||+||||++..
T Consensus 500 ~~~~~~i~~--------ll~~l~~-~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 500 SEQRIICSK--------VIRRFIL-HNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHHHHHHH--------HHHHHHH-HHTCEEEEECSCHHHH
T ss_pred HHHHHHHHH--------HHHHHHH-hCCCEEEEEeCCHHHH
Confidence 999988887 8888742 4589999999999876
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.83 E-value=2.1e-21 Score=217.77 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=126.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
.+++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|..... .+.+.. .+.+ +++++...
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~--~i~~-v~Q~~~l~ 1119 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN----VQWLRA--QLGI-VSQEPILF 1119 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC----HHHHTT--SCEE-EESSCCCC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC----HHHHHh--ceEE-ECCCCccc
Confidence 4689999999999999999999999999999999999999999999888764332 122323 3333 56655433
Q ss_pred HHHHHHHHHHhhh---------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEc
Q 017380 238 ASSVLSQAVKRGK---------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLD 298 (372)
Q Consensus 238 ~~~~~~~~~~~~~---------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLD 298 (372)
.. .+.+++.... ....+..+.... |+.........+|||||| +||||++.+|+ +||||
T Consensus 1120 ~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~--iLiLD 1196 (1284)
T 3g5u_A 1120 DC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH--ILLLD 1196 (1284)
T ss_dssp SS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCS--SEEEE
T ss_pred cc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCC--EEEEe
Confidence 22 2333332110 111111111000 111112234568999999 99999999999 99999
Q ss_pred C-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccCC
Q 017380 299 G-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVED 357 (372)
Q Consensus 299 E-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~D 357 (372)
| |+++|+..+..+.+ .+.++ .+|.|+|+|+||+... +..+.+|+.++.
T Consensus 1197 EpTs~lD~~~~~~i~~--------~l~~~---~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1197 EATSALDTESEKVVQE--------ALDKA---REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp SCSSSCCHHHHHHHHH--------HHHHH---SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred CCcccCCHHHHHHHHH--------HHHHh---CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9 99999999877776 66654 3588999999999875 557788887753
No 71
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=4.6e-21 Score=202.30 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=103.8
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHH---------------------HHHHhhhhhc-------CCeEEEeeccc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSL---------------------GKLAYRLKNE-------GAKILMAAGDT 208 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll---------------------~~Lag~l~~~-------~G~V~l~~~d~ 208 (372)
..+++++||++++|++++|+||||||||||+ +.++++.+|+ ++.|.+.+.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3568999999999999999999999999998 8888888887 44555544332
Q ss_pred cc-----hhhhhHH----HHHHHhhCccee------EeccccccHHHHHHH-----H---HHhhhhhch-H-HHHHHhhC
Q 017380 209 FR-----AAASDQL----EIWAERTGCEIV------VAEGEKAKASSVLSQ-----A---VKRGKEQGF-D-IVLCDTSG 263 (372)
Q Consensus 209 ~r-----~~a~eql----~~~~~~~~v~~~------~~~~~~~~~~~~~~~-----~---~~~~~~~~~-d-~vl~dt~G 263 (372)
.+ .+.+.|. .......+.... +......+....... . ......... + .-+++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 11 1111110 000011110000 000000000000000 0 000000000 0 11246778
Q ss_pred CCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 264 RLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 264 ~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
+.+. .++++.+||+||+ +|||||+.+|+..+|+||| |+|||+..+.++++ +|.++. .+|.|||+|
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~--------~l~~l~--~~g~tvi~v 260 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA--------TLKSMR--DLGNTLIVV 260 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH--------HHHHHH--HTTCEEEEE
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH--------HHHHHH--HcCCEEEEE
Confidence 8765 5889999999999 9999999986545999999 99999999988888 888886 458999999
Q ss_pred eeccCCc
Q 017380 339 VDELGIP 345 (372)
Q Consensus 339 sH~~~~p 345 (372)
|||++..
T Consensus 261 tHd~~~~ 267 (670)
T 3ux8_A 261 EHDEDTM 267 (670)
T ss_dssp CCCHHHH
T ss_pred eCCHHHH
Confidence 9999853
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=1.1e-20 Score=212.35 Aligned_cols=188 Identities=19% Similarity=0.191 Sum_probs=132.8
Q ss_pred HHHHHHhcc---CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 148 NSVLDLLTK---KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 148 ~~l~~~~~~---~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+++...|.. ..+++|+||++++|+.++||||+||||||+++.|.|++.|++|+|.++|.|..... +..+...+
T Consensus 419 ~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~----~~~lr~~i 494 (1321)
T 4f4c_A 419 ENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN----LEFLRKNV 494 (1321)
T ss_dssp EEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHHHHHHE
T ss_pred EEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc----HHHHhhcc
Confidence 455666643 34678999999999999999999999999999999999999999999887763322 23333444
Q ss_pred CcceeEeccccccHHHHHHHHHHhhh-------------hhchHHHHHHhh-CCCccchhhHhHHHHHHH---HHHHHHh
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGK-------------EQGFDIVLCDTS-GRLHTNYSLMEELVACKK---AVGKVVN 287 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~d~vl~dt~-G~~~~~~~~~~eLS~G~r---~iAral~ 287 (372)
++ +.|.+...... +++++.... ....+..+.... |...........|||||| +||||+.
T Consensus 495 ~~---v~Q~~~Lf~~T-I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 495 AV---VSQEPALFNCT-IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp EE---ECSSCCCCSEE-HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred cc---cCCcceeeCCc-hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 43 55555443322 333333221 111222222111 222233445568999999 9999999
Q ss_pred CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc-----eeeeccCcccC
Q 017380 288 GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP-----VKFVGVGEGVE 356 (372)
Q Consensus 288 ~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p-----i~~i~~Ge~v~ 356 (372)
.+|+ +||||| |+++|+..+..+.+ .+.++ .+|.|+|+|+|++... |.++.+|+.++
T Consensus 571 ~~~~--IliLDE~tSaLD~~te~~i~~--------~l~~~---~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 571 RNPK--ILLLDEATSALDAESEGIVQQ--------ALDKA---AKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp TCCS--EEEEESTTTTSCTTTHHHHHH--------HHHHH---HTTSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred cCCC--EEEEecccccCCHHHHHHHHH--------HHHHH---hCCCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 9999 999999 99999988755555 55555 4589999999999875 67888998874
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=5.1e-21 Score=207.02 Aligned_cols=86 Identities=20% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHHHHHhhCCCc-c-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccc
Q 017380 255 DIVLCDTSGRLH-T-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDG 328 (372)
Q Consensus 255 d~vl~dt~G~~~-~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~ 328 (372)
..++ +.+|+.+ . .++++.+|||||| +|||+++.+|+ +||||| |+|||+..+..+.. .|.++
T Consensus 881 ~~~L-e~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~--LLLLDEPT~gLD~~s~~~L~~--------~L~~~-- 947 (986)
T 2iw3_A 881 EEHC-SMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPH--LIVLDEPTNYLDRDSLGALSK--------ALKEF-- 947 (986)
T ss_dssp HHHH-HHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCS--EEEEECGGGTCCHHHHHHHHH--------HHHSC--
T ss_pred HHHH-HHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCC--EEEEECCccCCCHHHHHHHHH--------HHHHh--
Confidence 3344 6778865 3 4778999999999 99999999999 999999 99999998877666 55443
Q ss_pred cccceeeEeeeeccCCc------eeeeccCcccC
Q 017380 329 SARGGCVVSVVDELGIP------VKFVGVGEGVE 356 (372)
Q Consensus 329 t~~gg~vi~isH~~~~p------i~~i~~Ge~v~ 356 (372)
+++||++|||++.. +.++.+|+.+.
T Consensus 948 ---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 948 ---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp ---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred ---CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 57999999998764 55677887764
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.79 E-value=1.2e-20 Score=204.20 Aligned_cols=209 Identities=15% Similarity=0.076 Sum_probs=135.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHcCCC-----CC-hhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcH
Q 017380 110 LLVSDFGPRITIKIVESLRDDILAGKL-----KS-GPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGK 183 (372)
Q Consensus 110 L~~~dv~~~~~~~i~~~~~~~~~~~~~-----~~-~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGK 183 (372)
.+..=++...+..+++.+++....... .. .+.-..+...++.+.|++...++++||++.+|++++|+|||||||
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGK 474 (986)
T 2iw3_A 395 YMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGK 474 (986)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHTSCCCCCCCSSCSSSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSH
T ss_pred HHHHhcchhhHHHHHHHHHHHhccccccccccCccccccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCH
Confidence 444445566788888888776543211 11 111112233367778877667899999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc-cccHHHHHHHHHHhh---hhhchHHHHH
Q 017380 184 TTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE-KAKASSVLSQAVKRG---KEQGFDIVLC 259 (372)
Q Consensus 184 TTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~d~vl~ 259 (372)
|||+++|+| |+| .+.+... ...+.+ +.+.. ...+...+.+.+... ....+..++
T Consensus 475 STLLk~Lag------G~i--~g~~~~~------------~~~~~~-v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L- 532 (986)
T 2iw3_A 475 STLMRAIAN------GQV--DGFPTQE------------ECRTVY-VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKL- 532 (986)
T ss_dssp HHHHHHHHH------TCS--TTCCCTT------------TSCEEE-TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHH-
T ss_pred HHHHHHHhC------CCc--CCCcccc------------ceeEEE-EcccccccccCCcHHHHHHHhhcCHHHHHHHHH-
Confidence 999999995 332 1111100 000000 11110 001111111211110 011233334
Q ss_pred HhhCCC-ccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 260 DTSGRL-HTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 260 dt~G~~-~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
+.+|+. +..++++.+||+||| .|||+++.+|+ +|+||| |++||+..+..+++ +|.+ .|++
T Consensus 533 ~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~--lLLLDEPTs~LD~~~~~~l~~--------~L~~-----~g~t 597 (986)
T 2iw3_A 533 IEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD--ILLLDEPTNHLDTVNVAWLVN--------YLNT-----CGIT 597 (986)
T ss_dssp HHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS--EEEEESTTTTCCHHHHHHHHH--------HHHH-----SCSE
T ss_pred HHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC--EEEEECCccCCCHHHHHHHHH--------HHHh-----CCCE
Confidence 678985 567889999999999 99999999999 999999 99999999988777 6655 3789
Q ss_pred eEeeeeccCCc------eeeeccCccc
Q 017380 335 VVSVVDELGIP------VKFVGVGEGV 355 (372)
Q Consensus 335 vi~isH~~~~p------i~~i~~Ge~v 355 (372)
+|++|||++.. +.++.+|+.+
T Consensus 598 vIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 598 SITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EEEEECCHHHHHHhCCEEEEEECCeee
Confidence 99999998764 5567778764
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=1.9e-19 Score=190.04 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=70.5
Q ss_pred HhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCCC-ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 260 DTSGRLH-TNYSLMEELVACKK---AVGKVVNGAPN-EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 260 dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P~-~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
+.+|+.. ..++++.+|||||+ +|||||+.+|. ..+|+||| |+|||+..+..++. ++.++. ++|.
T Consensus 528 ~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~--------~l~~l~--~~g~ 597 (670)
T 3ux8_A 528 YDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD--------VLHRLV--DNGD 597 (670)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH--------HHHHHH--HTTC
T ss_pred HHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH--------HHHHHH--HCCC
Confidence 4567754 45788999999999 99999987752 12999999 99999999988888 888886 4589
Q ss_pred eeEeeeeccCCc-----eeee------ccCcccC
Q 017380 334 CVVSVVDELGIP-----VKFV------GVGEGVE 356 (372)
Q Consensus 334 ~vi~isH~~~~p-----i~~i------~~Ge~v~ 356 (372)
|||+|+||++.. +.++ ..|+.+.
T Consensus 598 tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 598 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp EEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred EEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 999999999764 4566 5787763
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.71 E-value=1.4e-17 Score=165.30 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=61.7
Q ss_pred HHHHHH---HHHHHHhCCC--CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc---
Q 017380 275 LVACKK---AVGKVVNGAP--NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP--- 345 (372)
Q Consensus 275 LS~G~r---~iAral~~~P--~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p--- 345 (372)
||+||+ +||++++.+| + +||||| |+|||+..+..++. +|.++. +|++||+|||+..+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~--~LlLDEpt~~LD~~~~~~l~~--------~L~~l~---~~~~vi~itH~~~~~~~~ 362 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTP--SVVFDEVDAGIGGAAAIAVAE--------QLSRLA---DTRQVLVVTHLAQIAARA 362 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSS--EEEESSTTTTCCHHHHHHHHH--------HHHHHT---TTSEEEEECSCHHHHTTC
T ss_pred cCHhHHHHHHHHHHHHhCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHh---CCCEEEEEeCcHHHHhhc
Confidence 599999 9999999999 8 999999 99999999988887 787774 489999999998664
Q ss_pred --eeee----ccCcccCCCCCCC
Q 017380 346 --VKFV----GVGEGVEDLQPFD 362 (372)
Q Consensus 346 --i~~i----~~Ge~v~Dl~~~~ 362 (372)
+..+ .+|+.+.++...+
T Consensus 363 d~i~~l~k~~~~G~~~~~~~~l~ 385 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHVRLLT 385 (415)
T ss_dssp SEEEEEEEEEETTEEEEEEEECC
T ss_pred CeEEEEEEeccCCceEEEEEECC
Confidence 4456 7787765544443
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.69 E-value=6.8e-18 Score=148.17 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=85.9
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc-ccHHH
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK-AKASS 240 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~-~~~~~ 240 (372)
++||++++|++++|+|||||||||+++.+.+ |...+ ..|..+ .+ +.+..+ .....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~-~~d~~~--------g~---------~~~~~~~~~~~~ 56 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI-SSDFCR--------GL---------MSDDENDQTVTG 56 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE-EHHHHH--------HH---------HCSSTTCGGGHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE-ccHHHH--------HH---------hcCcccchhhHH
Confidence 5799999999999999999999999998542 22222 222211 00 001110 00011
Q ss_pred HHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHH---------
Q 017380 241 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLP--------- 307 (372)
Q Consensus 241 ~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~--------- 307 (372)
..++..... ..... ..|.....+. ....|+|++ .||++++.+|+ +|+||| |+++|+..
T Consensus 57 ~~~~~~~~~-----~~~~~-~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~--~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 57 AAFDVLHYI-----VSKRL-QLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPV--AVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp HHHHHHHHH-----HHHHH-HTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEE--EEEECCCHHHHHHHHHTCSSCCCC
T ss_pred HHHHHHHHH-----HHHHH-hCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEE--EEEEeCCHHHHHHHHhcccCCCCC
Confidence 111111110 00111 2244332222 223478877 99999999999 999999 99999983
Q ss_pred -------HHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 308 -------QAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 308 -------~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+..+.. ++.++. .+|.++|+++|+++..
T Consensus 128 ~~vi~~~~~~l~~--------~l~~l~--~~g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 128 EYVIRKHTQQMKK--------SIKGLQ--REGFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHHHHHHH--------HSTTHH--HHTCSEEEEECSHHHH
T ss_pred HHHHHHHHHHhhh--------hhhhHH--hcCCcEEEEeCCHHHh
Confidence 355555 666665 3489999999998765
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-18 Score=175.27 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=114.2
Q ss_pred HHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-e-EEEeeccccc-hhhhhHHHHHH
Q 017380 145 ALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-K-ILMAAGDTFR-AAASDQLEIWA 221 (372)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~-V~l~~~d~~r-~~a~eql~~~~ 221 (372)
+-.+++.+.|+ +++|++++|++++|+||||||||||+++|+|+++|++| + |.+++ +..+ .+..
T Consensus 119 i~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~v------- 184 (460)
T 2npi_A 119 KYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTV------- 184 (460)
T ss_dssp HHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSC-------
T ss_pred hhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeee-------
Confidence 34568888886 58999999999999999999999999999999999999 8 88865 3211 1110
Q ss_pred HhhCcceeEecc---ccccHHHHHHHH-HHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHH--HhCCCCc
Q 017380 222 ERTGCEIVVAEG---EKAKASSVLSQA-VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKV--VNGAPNE 292 (372)
Q Consensus 222 ~~~~v~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAra--l~~~P~~ 292 (372)
.+....+... ...+.. ..... ........+.. +++.+|+.+..+ +.+||+||+ ++|++ |+.+|+
T Consensus 185 --pq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~-ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~- 257 (460)
T 2npi_A 185 --PGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQP-MVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQ- 257 (460)
T ss_dssp --SSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCC-EECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred --ccchhhcccccccchhhhh-cccccccCcchHHHHHH-HHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcc-
Confidence 0100000000 000000 00000 00000111222 335677766554 889999999 99999 999999
Q ss_pred eE----EEEcC--CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccC--Cc---------------eeee
Q 017380 293 IL----LVLDG--TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELG--IP---------------VKFV 349 (372)
Q Consensus 293 ~l----LvLDE--tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~--~p---------------i~~i 349 (372)
+ |+||| |+++|+. +..+.. ++.++ +.++|+|+|+.+ +- +.++
T Consensus 258 -i~~sGLlLDEpPts~LD~~-~~~l~~--------l~~~~-----~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 258 -VRRSGCIVDTPSISQLDEN-LAELHH--------IIEKL-----NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp -HHHSCEEEECCCGGGSCSS-CHHHHH--------HHHHT-----TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred -cCcceEEEeCCcccccChh-HHHHHH--------HHHHh-----CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9 99999 7899987 323333 44333 568999999987 21 6777
Q ss_pred c-cCccc
Q 017380 350 G-VGEGV 355 (372)
Q Consensus 350 ~-~Ge~v 355 (372)
. .|+.+
T Consensus 323 ~k~G~iv 329 (460)
T 2npi_A 323 PKLDGVS 329 (460)
T ss_dssp CCCTTCC
T ss_pred eCCCcEE
Confidence 7 88877
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.67 E-value=2.9e-17 Score=175.97 Aligned_cols=86 Identities=23% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCC---CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccc
Q 017380 258 LCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGA---PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGS 329 (372)
Q Consensus 258 l~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~---P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t 329 (372)
+++.+|+.+ ..++.+.+||+||+ .||++|+.+ |+ +||||| |+|||+..+..++. +|.++.
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~--lLILDEPTsGLD~~~~~~l~~--------lL~~L~-- 780 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGT--VYVLDEPTTGLHPADVERLQR--------QLVKLV-- 780 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCE--EEEEECTTTTCCHHHHHHHHH--------HHHHHH--
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--
Confidence 346778876 35788999999999 999999996 57 999999 99999999988887 888886
Q ss_pred ccceeeEeeeeccCCc-----eeee------ccCccc
Q 017380 330 ARGGCVVSVVDELGIP-----VKFV------GVGEGV 355 (372)
Q Consensus 330 ~~gg~vi~isH~~~~p-----i~~i------~~Ge~v 355 (372)
++|.+||+|+||++.. +..+ ..|+.+
T Consensus 781 ~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv 817 (842)
T 2vf7_A 781 DAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLV 817 (842)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEE
T ss_pred hCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEE
Confidence 4689999999998764 4566 356665
No 80
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.66 E-value=2.1e-16 Score=170.12 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=71.6
Q ss_pred HHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCC---CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccc
Q 017380 258 LCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAP---NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGS 329 (372)
Q Consensus 258 l~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P---~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t 329 (372)
+++.+|+.+ ..++.+.+||+||+ .||++|+.+| + +||||| |+|||+..+..++. +|.++.
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~--lLILDEPTsGLD~~~~~~l~~--------lL~~L~-- 895 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT--LYILDEPTTGLHVDDIARLLD--------VLHRLV-- 895 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCE--EEEEECTTTTCCHHHHHHHHH--------HHHHHH--
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--
Confidence 346779877 67889999999999 9999999875 7 999999 99999999988887 888886
Q ss_pred ccceeeEeeeeccCCc-----eeee------ccCccc
Q 017380 330 ARGGCVVSVVDELGIP-----VKFV------GVGEGV 355 (372)
Q Consensus 330 ~~gg~vi~isH~~~~p-----i~~i------~~Ge~v 355 (372)
++|.+||+++|+++.. +..+ ..|+.+
T Consensus 896 ~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv 932 (972)
T 2r6f_A 896 DNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 932 (972)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEE
T ss_pred hCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEE
Confidence 4689999999998763 4456 356665
No 81
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=2.5e-16 Score=170.06 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=70.0
Q ss_pred HHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCC-ceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccc
Q 017380 259 CDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPN-EILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARG 332 (372)
Q Consensus 259 ~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~-~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~g 332 (372)
++.+|+... .++++.+|||||+ .|||+|+.+|. ..+||||| |+|||+..+..++. +|.++. ++|
T Consensus 789 L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~--------lL~~L~--~~G 858 (916)
T 3pih_A 789 LHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE--------VLHRLV--DRG 858 (916)
T ss_dssp HHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH--------HHHHHH--HTT
T ss_pred HHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH--------HHHHHH--hcC
Confidence 356788653 4678899999999 99999997751 23999999 99999999988887 888886 458
Q ss_pred eeeEeeeeccCCc-----eeee------ccCccc
Q 017380 333 GCVVSVVDELGIP-----VKFV------GVGEGV 355 (372)
Q Consensus 333 g~vi~isH~~~~p-----i~~i------~~Ge~v 355 (372)
.|||+|+|+++.. +..+ ..|+.+
T Consensus 859 ~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv 892 (916)
T 3pih_A 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIV 892 (916)
T ss_dssp CEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEE
T ss_pred CEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEE
Confidence 9999999999764 4456 456665
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=1e-17 Score=152.13 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=78.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc--cc-cHHHHHHH
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE--KA-KASSVLSQ 244 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~--~~-~~~~~~~~ 244 (372)
++|++++|+||||||||||+++|+|+ +|++|+|... +..+. .. .+...+++ +.+.. .. ......+.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~~~-~~----~~~~~ig~---v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILTRP-AV----EAGEKLGF---LPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEEEC-SC----CTTCCCCS---SCC------CTTTHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--EecCC-ch----hhhcceEE---ecCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999999 9999998531 11110 00 01112222 22221 00 00000011
Q ss_pred HHHh-hhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCch
Q 017380 245 AVKR-GKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGIT 319 (372)
Q Consensus 245 ~~~~-~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~t 319 (372)
.+.. .....++.++ +. |+ ||+ +||||++.+|+ +|+||| |++ .+..++.
T Consensus 89 ~~~~~~~~~~~~~~l-~~-gl-------------Gq~qrv~lAraL~~~p~--lllLDEPts~----~~~~l~~------ 141 (208)
T 3b85_A 89 ALRDMVEPEVIPKLM-EA-GI-------------VEVAPLAYMRGRTLNDA--FVILDEAQNT----TPAQMKM------ 141 (208)
T ss_dssp HHTTTSCTTHHHHHH-HT-TS-------------EEEEEGGGGTTCCBCSE--EEEECSGGGC----CHHHHHH------
T ss_pred HHHHhccHHHHHHHH-Hh-CC-------------chHHHHHHHHHHhcCCC--EEEEeCCccc----cHHHHHH------
Confidence 1110 0011122222 22 22 777 99999999999 999999 999 5545665
Q ss_pred hhHhhhccccccceeeEeeeeccCCc
Q 017380 320 GLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 320 giiltkld~t~~gg~vi~isH~~~~p 345 (372)
+|.++ .+|.+|| +|||++..
T Consensus 142 --~l~~l---~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 142 --FLTRL---GFGSKMV-VTGDITQV 161 (208)
T ss_dssp --HHTTB---CTTCEEE-EEEC----
T ss_pred --HHHHh---cCCCEEE-EECCHHHH
Confidence 77777 2478899 99998875
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.62 E-value=5.5e-16 Score=167.43 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=65.5
Q ss_pred HHHhhCCCc-cchhhHhHHHHHHH---HHHHHHhCCC---CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccc
Q 017380 258 LCDTSGRLH-TNYSLMEELVACKK---AVGKVVNGAP---NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGS 329 (372)
Q Consensus 258 l~dt~G~~~-~~~~~~~eLS~G~r---~iAral~~~P---~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t 329 (372)
+++.+|+.. ..++.+.+||+||+ .||++|+.+| + +||||| |+|||+..+..++. +|.++.
T Consensus 846 ~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~--lLILDEPTsGLD~~~~~~l~~--------lL~~L~-- 913 (993)
T 2ygr_A 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRT--VYILDEPTTGLHFDDIRKLLN--------VINGLV-- 913 (993)
T ss_dssp HHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSE--EEEEESTTTTCCHHHHHHHHH--------HHHHHH--
T ss_pred HHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--
Confidence 346778876 56888999999999 9999999875 7 999999 99999999988887 888886
Q ss_pred ccceeeEeeeeccCCc
Q 017380 330 ARGGCVVSVVDELGIP 345 (372)
Q Consensus 330 ~~gg~vi~isH~~~~p 345 (372)
..|.+||+|+|+++..
T Consensus 914 ~~G~TVIvisHdl~~i 929 (993)
T 2ygr_A 914 DKGNTVIVIEHNLDVI 929 (993)
T ss_dssp HTTCEEEEECCCHHHH
T ss_pred hCCCEEEEEcCCHHHH
Confidence 4689999999998763
No 84
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.62 E-value=8.3e-16 Score=150.95 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=63.3
Q ss_pred hhhHhHHHHHHH---HHHHHHh------CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 269 YSLMEELVACKK---AVGKVVN------GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 269 ~~~~~eLS~G~r---~iAral~------~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
++++.+||+||+ .||+|++ .+|+ +|+||| |+|||+..+..++. ++.++. ..|.+||+|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~--~lllDEpt~~LD~~~~~~~~~--------~l~~l~--~~g~tvi~i 341 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLD--AFFIDEGFSSLDTENKEKIAS--------VLKELE--RLNKVIVFI 341 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCC--EEEEESCCTTSCHHHHHHHHH--------HHHGGG--GSSSEEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCC--EEEEeCCCccCCHHHHHHHHH--------HHHHHH--hCCCEEEEE
Confidence 467889999999 8889988 7999 999999 99999999988887 888886 458999999
Q ss_pred eeccCCc-----eeeeccCccc
Q 017380 339 VDELGIP-----VKFVGVGEGV 355 (372)
Q Consensus 339 sH~~~~p-----i~~i~~Ge~v 355 (372)
||+++.. +.++..|+.+
T Consensus 342 tH~~~~~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 342 THDREFSEAFDRKLRITGGVVV 363 (365)
T ss_dssp ESCHHHHTTCSCEEEEETTEEC
T ss_pred ecchHHHHhCCEEEEEECCEEE
Confidence 9998763 4455666654
No 85
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=1.1e-14 Score=140.46 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=54.7
Q ss_pred cchhhHhHHHHHHH---HHHHHHh----CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 267 TNYSLMEELVACKK---AVGKVVN----GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 267 ~~~~~~~eLS~G~r---~iAral~----~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
..+..+.+||+||+ +||++++ .+|+ +|+||| |++||+..+..++. ++.++. ++.++|++
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~--~lllDEp~~~LD~~~~~~l~~--------~l~~~~---~~~~vi~~ 278 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSP--FYVLDEVDSPLDDYNAERFKR--------LLKENS---KHTQFIVI 278 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCS--EEEEESCCSSCCHHHHHHHHH--------HHHHHT---TTSEEEEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCC--EEEEeCCCCCCCHHHHHHHHH--------HHHHhc---CCCeEEEE
Confidence 34567889999999 8999986 6788 999999 99999999988887 777774 37899999
Q ss_pred eeccCC
Q 017380 339 VDELGI 344 (372)
Q Consensus 339 sH~~~~ 344 (372)
||+..+
T Consensus 279 tH~~~~ 284 (322)
T 1e69_A 279 THNKIV 284 (322)
T ss_dssp CCCTTG
T ss_pred ECCHHH
Confidence 999653
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.54 E-value=2.9e-15 Score=132.63 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
+++|+||||||||||+++|+|++. |.+.+.+..... . ..+....++ +.+.... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~--~--~~~~~~ig~---~~~~~~~--------------~ 55 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR--D--PETKKRTGF---RIITTEG--------------K 55 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC----------CCEE---EEEETTC--------------C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc--c--ccccceeEE---EeecCcH--------------H
Confidence 589999999999999999999985 333332221100 0 011223332 2221100 0
Q ss_pred hchHHHHHHhhCCC--ccchhhHhHHHHHHH---HHHHH-----HhCCCCceEEEEcC---CCCCCHHHHHHHHhhhcCc
Q 017380 252 QGFDIVLCDTSGRL--HTNYSLMEELVACKK---AVGKV-----VNGAPNEILLVLDG---TTGLNMLPQAREFNDVVGI 318 (372)
Q Consensus 252 ~~~d~vl~dt~G~~--~~~~~~~~eLS~G~r---~iAra-----l~~~P~~~lLvLDE---tsglD~~~~~~~~~~~~~~ 318 (372)
+.. + ...+.. +..++++.+||+||+ .+|++ ++.+|+ +|+||| |+++|+..+..+..
T Consensus 56 ~~~---~-~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~--llilDEigp~~~ld~~~~~~l~~----- 124 (178)
T 1ye8_A 56 KKI---F-SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRK--VIIIDEIGKMELFSKKFRDLVRQ----- 124 (178)
T ss_dssp EEE---E-EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTC--EEEECCCSTTGGGCHHHHHHHHH-----
T ss_pred HHH---H-HhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCC--EEEEeCCCCcccCCHHHHHHHHH-----
Confidence 000 0 001111 245677889999998 88996 899999 999999 78999988866665
Q ss_pred hhhHhhhccccccceeeEeeee---ccCCceeeecc--CcccCCCCCCCHHHHHHH
Q 017380 319 TGLILTKLDGSARGGCVVSVVD---ELGIPVKFVGV--GEGVEDLQPFDAEAFVNA 369 (372)
Q Consensus 319 tgiiltkld~t~~gg~vi~isH---~~~~pi~~i~~--Ge~v~Dl~~~~~~~~v~~ 369 (372)
++.+ .+.++|+++| +..+.-.+... |+.+ ++...+.+++...
T Consensus 125 ---~l~~-----~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~-~~~~~~r~~~~~~ 171 (178)
T 1ye8_A 125 ---IMHD-----PNVNVVATIPIRDVHPLVKEIRRLPGAVLI-ELTPENRDVILED 171 (178)
T ss_dssp ---HHTC-----TTSEEEEECCSSCCSHHHHHHHTCTTCEEE-ECCTTTTTTHHHH
T ss_pred ---HHhc-----CCCeEEEEEccCCCchHHHHHHhcCCcEEE-EecCcCHHHHHHH
Confidence 4433 3566777875 55554444433 4544 3444454444443
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=2.5e-15 Score=146.51 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=112.3
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH-HhhC
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA-ERTG 225 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~-~~~~ 225 (372)
+++.+.|+ +..+++++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+.+..... +...... ..+.
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~--~~i~~~~~~~~~ 125 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN--EFLALLPQSTLS 125 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH--HHHTTSCHHHHT
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH--HHHHhhhhhhhh
Confidence 45566676 34567888 999999999999999999999999999999999898888765431110 0000000 0011
Q ss_pred cceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCcc--chhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCC
Q 017380 226 CEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT--NYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGL 303 (372)
Q Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~--~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsgl 303 (372)
..+.+.......+.......... ......+.| .|. +. .-..+..||+|+|.++-| +.+|+ + |.|+
T Consensus 126 ~~v~~~~~~~~~~~~r~~~~~~~---~~~ae~~~~-~~~-~vl~~ld~~~~lS~g~r~v~la-l~~p~--~-----t~Gl 192 (347)
T 2obl_A 126 KCVLVVTTSDRPALERMKAAFTA---TTIAEYFRD-QGK-NVLLMMDSVTRYARAARDVGLA-SGEPD--V-----RGGF 192 (347)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHH---HHHHHHHHT-TTC-EEEEEEETHHHHHHHHHHHHHH-TTCCC--C-----BTTB
T ss_pred ceEEEEECCCCCHHHHHHHHHHH---HHHHHHHHh-ccc-cHHHHHhhHHHHHHHHHHHHHH-cCCCC--c-----ccCC
Confidence 11111111111111111111100 001111111 111 10 014688999999966666 57888 4 9999
Q ss_pred CHHHHHHHHhhhcCchhhHhhhccccccce-----eeEeeeeccCCc----eeeeccCccc
Q 017380 304 NMLPQAREFNDVVGITGLILTKLDGSARGG-----CVVSVVDELGIP----VKFVGVGEGV 355 (372)
Q Consensus 304 D~~~~~~~~~~~~~~tgiiltkld~t~~gg-----~vi~isH~~~~p----i~~i~~Ge~v 355 (372)
|+.....+.. ++.++.....|. +|++++||++.| +.++.+|+.+
T Consensus 193 dp~~~~~l~~--------ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 193 PPSVFSSLPK--------LLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp CHHHHHHHHH--------HHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHH--------HHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 9999988777 788775212365 899999999977 4467888887
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=5.3e-15 Score=151.77 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=103.3
Q ss_pred ccCCCCCccce-eccCCeEEEEEcCCCCcHHHHHHH--HHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEe
Q 017380 155 TKKGNKTELQL-GYRKPAVVLIVGVNGGGKTTSLGK--LAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVA 231 (372)
Q Consensus 155 ~~~~~~~~isl-~i~~g~vi~lvGpNGsGKTTll~~--Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~ 231 (372)
+...+++++++ .+++|++++|+||||||||||++. ++|+++|.+|.|.+.+.+. . .++...+...++ +.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~----~~~~~~~~~~g~---~~ 94 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-P----QDIIKNARSFGW---DL 94 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-H----HHHHHHHGGGTC---CH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-H----HHHHHHHHHcCC---Ch
Confidence 34567889999 999999999999999999999999 7899999999999977663 1 122223333333 11
Q ss_pred ccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCC-----CCH
Q 017380 232 EGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTG-----LNM 305 (372)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsg-----lD~ 305 (372)
+....... +. .+.......... +++.+++.+..++.+.+||+| +|+ +++||| |+. +|+
T Consensus 95 q~~~~~~~--l~-~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LS~g----------~~~--~lilDe~t~~~~~~~lD~ 158 (525)
T 1tf7_A 95 AKLVDEGK--LF-ILDASPDPEGQE-VVGGFDLSALIERINYAIQKY----------RAR--RVSIDSVTSVFQQYDASS 158 (525)
T ss_dssp HHHHHTTS--EE-EEECCCCSSCCS-CCSSHHHHHHHHHHHHHHHHH----------TCS--EEEEECSTTTSTTTCCHH
T ss_pred HHhhccCc--EE-EEecCcccchhh-hhcccCHHHHHHHHHHHHHHc----------CCC--EEEECCHHHHHHhcCCHH
Confidence 11100000 00 000000000011 113334445566777888887 688 999999 763 578
Q ss_pred HHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 306 LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 306 ~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
..+..++. ++.++. +.|.++|+++|+++..
T Consensus 159 ~~~~~l~~--------ll~~l~--~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 159 VVRRELFR--------LVARLK--QIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHH--------HHHHHH--HHTCEEEEEEECSSSS
T ss_pred HHHHHHHH--------HHHHHH--HCCCEEEEEecCCCCc
Confidence 88877777 888886 4689999999999863
No 89
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.53 E-value=2.5e-17 Score=164.02 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcc-eeEeccccccHHHHHHHHHH
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGEKAKASSVLSQAVK 247 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 247 (372)
.+.+++|+||||||||||+++|+|+++|++|+|.+.+.++.+.+...| ....+ ..+....+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q------~~~~~~ltv~D~~g~~---------- 131 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK------HPNIPNVVFWDLPGIG---------- 131 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE------CSSCTTEEEEECCCGG----------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc------ccccCCeeehHhhccc----------
Confidence 344999999999999999999999999999999986655422111100 00000 0011111100
Q ss_pred hhhhhchHHHHHHhhCCCccchhhHhHHHHH--HH---HHHHHHhC----------CCCceEEEEcC-CCCCCHHHHHHH
Q 017380 248 RGKEQGFDIVLCDTSGRLHTNYSLMEELVAC--KK---AVGKVVNG----------APNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 248 ~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G--~r---~iAral~~----------~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
. .....+.++ +.+++.+..... . ||+| ++ .||+++.. +|+ ++++|| |+|+|+..+.++
T Consensus 132 ~-~~~~~~~~L-~~~~L~~~~~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd--lllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 132 S-TNFPPDTYL-EKMKFYEYDFFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD--SDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp G-SSCCHHHHH-HHTTGGGCSEEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH--HHHHHHHTTCCTTCCHHHH
T ss_pred c-hHHHHHHHH-HHcCCCccCCeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc--ccccCcccccCCHHHHHHH
Confidence 0 112334444 466665543333 3 8888 65 99999999 899 999999 999999888777
Q ss_pred HhhhcCchhhHhhhcc-----c--cccceeeEeeeeccCC
Q 017380 312 FNDVVGITGLILTKLD-----G--SARGGCVVSVVDELGI 344 (372)
Q Consensus 312 ~~~~~~~tgiiltkld-----~--t~~gg~vi~isH~~~~ 344 (372)
.. ++.++. + .....++++++|++.-
T Consensus 206 ~~--------~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 206 LQ--------DIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp HH--------HHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred HH--------HHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 76 555552 1 0123567888987664
No 90
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.48 E-value=2.9e-16 Score=141.66 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=40.8
Q ss_pred HHhCCCCceEEEEcC-CCCC----CHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCcee
Q 017380 285 VVNGAPNEILLVLDG-TTGL----NMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVK 347 (372)
Q Consensus 285 al~~~P~~~lLvLDE-tsgl----D~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~pi~ 347 (372)
+++.+|+ +++||| ++++ |+..+.++.. ++.++.. ..|.++|+++||++....
T Consensus 137 ~l~~~p~--~~~LDep~~~l~~~~d~~~~~~l~~--------~l~~l~~-~~g~tvi~vtHdl~~~~~ 193 (207)
T 1znw_A 137 VFLAPPS--WQDLQARLIGRGTETADVIQRRLDT--------ARIELAA-QGDFDKVVVNRRLESACA 193 (207)
T ss_dssp EEEECSC--HHHHHHHHHTTSCSCHHHHHHHHHH--------HHHHHHG-GGGSSEEEECSSHHHHHH
T ss_pred EEEECCC--HHHHHHHHHhcCCCCHHHHHHHHHH--------HHHHHhh-hccCcEEEECCCHHHHHH
Confidence 6778999 999999 9997 6667766666 7777753 458899999999887643
No 91
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.47 E-value=1.7e-14 Score=144.85 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=112.2
Q ss_pred HHHHHHhc-cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhh-hH---HHHHHH
Q 017380 148 NSVLDLLT-KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAAS-DQ---LEIWAE 222 (372)
Q Consensus 148 ~~l~~~~~-~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~-eq---l~~~~~ 222 (372)
+++.+.|+ ...+++++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.+....... +. ...+.+
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r 213 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRAR 213 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHT
T ss_pred eccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCc
Confidence 45666675 34467889 99999999999999999999999999999999999999977631111100 00 011111
Q ss_pred hhCcceeEecc-ccccHHHHHHHHHHhhhhhchHHHHHHhhCCC-ccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCC
Q 017380 223 RTGCEIVVAEG-EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRL-HTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGT 300 (372)
Q Consensus 223 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~-~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEt 300 (372)
.+.+ +.+. ....+...+.+...... ....+ .+.. ...-..+..||+|+|.++-| +.+|+ + |
T Consensus 214 --~i~~-v~q~~~~~~~~~~v~~~~~~~a-----e~~~~-~~~~v~~~ld~l~~lS~g~qrvslA-l~~p~--~-----t 276 (438)
T 2dpy_A 214 --SVVI-AAPADVSPLLRMQGAAYATRIA-----EDFRD-RGQHVLLIMDSLTRYAMAQREIALA-IGEPP--A-----T 276 (438)
T ss_dssp --EEEE-EECTTSCHHHHHHHHHHHHHHH-----HHHHT-TTCEEEEEEECHHHHHHHHHHHHHH-TTCCC--C-----S
T ss_pred --eEEE-EECCCCCHHHHHHHHHHHHHHH-----HHHHh-CCCCHHHHHHhHHHHHHHHHHHHHH-hCCCc--c-----c
Confidence 2222 3432 21111112222211100 00111 0110 00112378999999955555 78888 5 9
Q ss_pred CCCCHHHHHHHHhhhcCchhhHhhhcccc--ccce-----eeEeeeeccCCc----eeeeccCccc
Q 017380 301 TGLNMLPQAREFNDVVGITGLILTKLDGS--ARGG-----CVVSVVDELGIP----VKFVGVGEGV 355 (372)
Q Consensus 301 sglD~~~~~~~~~~~~~~tgiiltkld~t--~~gg-----~vi~isH~~~~p----i~~i~~Ge~v 355 (372)
+|+|+..+..+.. ++.++... ..|. +|++++||+..| +.++.+|+.+
T Consensus 277 ~glD~~~~~~l~~--------ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 277 KGYPPSVFAKLPA--------LVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIV 334 (438)
T ss_dssp SSCCTTHHHHHHH--------HHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEE
T ss_pred ccCCHHHHHHHHH--------HHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEE
Confidence 9999999977777 77777531 1253 899999999865 4467788776
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.46 E-value=3.3e-13 Score=127.94 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=88.8
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEEeeccccchhhhhHHH-H-HHHhhCcceeEeccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILMAAGDTFRAAASDQLE-I-WAERTGCEIVVAEGE 234 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l~~~d~~r~~a~eql~-~-~~~~~~v~~~~~~~~ 234 (372)
..++++++.+.+|++++|+||||+||||+++.|++.+.++.| +|.+.+.+... +++. . .....+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~----~~~~~r~~~~~~~~~~------ 92 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV----EETAEDLIGLHNRVRL------ 92 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH----HHHHHHHHHHHTTCCG------
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCH----HHHHHHHHHHHcCCCh------
Confidence 346677888999999999999999999999999999999855 88877765421 1221 1 111112211
Q ss_pred cccHHHHHHHHHHhhhh-hchHHHHHHhhCC--Ccc-chhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CC---C---C
Q 017380 235 KAKASSVLSQAVKRGKE-QGFDIVLCDTSGR--LHT-NYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TT---G---L 303 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-~~~d~vl~dt~G~--~~~-~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-ts---g---l 303 (372)
...+..... .+..... +..+.++ +..++ .+. .+..+.+| -+++.++++..+|+ ++|+|| ++ + +
T Consensus 93 ~~~~~l~~~-~~~~~~~~~~~~~~l-~~~~l~i~~~~~~~~~~~l--~~~~~a~~~~~~p~--llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 93 RQSDSLKRE-IIENGKFDQWFDELF-GNDTFHLYDSFAEAETDRL--LAKLAYMRSGLGCD--VIILDHISIVVSASGES 166 (296)
T ss_dssp GGCHHHHHH-HHHHTHHHHHHHHHH-SSSCEEEECCCCSCCHHHH--HHHHHHHHHTTCCS--EEEEEEEC---------
T ss_pred hhccccccC-CCCHHHHHHHHHHHh-ccCCEEEECCCCCCCHHHH--HHHHHHHHHhcCCC--EEEEcCccccCCCCCCC
Confidence 000000000 0110000 1111111 11121 111 22345555 23344677889999 999999 88 4 3
Q ss_pred CH-HHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 304 NM-LPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 304 D~-~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
|. ....++.. .|.++.. ..+.+||+++|+.
T Consensus 167 d~~~~~~~i~~--------~L~~la~-~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 167 DERKMIDNLMT--------KLKGFAK-STGVVLVVICHLK 197 (296)
T ss_dssp --CHHHHHHHH--------HHHHHHH-HHCCEEEEEEECC
T ss_pred CHHHHHHHHHH--------HHHHHHH-HhCCeEEEEEecC
Confidence 43 33334444 5666642 3488999999996
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.46 E-value=5.5e-14 Score=152.37 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=86.2
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccccc
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-NEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAK 237 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~ 237 (372)
++++++|++++|++++|+||||+||||+++.++.... ++.|.. +|. .....
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~------------------------vpa----~~~~~ 702 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF------------------------VPC----ESAEV 702 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC------------------------BSE----EEEEE
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc------------------------ccc----ccccc
Confidence 4568899999999999999999999999999955432 121100 000 00000
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHH--hCCCCceEEEEcC-CCCCCHHHHHHHHhh
Q 017380 238 ASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVV--NGAPNEILLVLDG-TTGLNMLPQAREFND 314 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral--~~~P~~~lLvLDE-tsglD~~~~~~~~~~ 314 (372)
..++.++ ..+|..+........++++++.+++++ +.+|+ +++||| ++|+|+.....+...
T Consensus 703 --------------~~~d~i~-~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~s--LlLLDEp~~GlD~~~~~~i~~~ 765 (934)
T 3thx_A 703 --------------SIVDCIL-ARVGAGDSQLKGVSTFMAEMLETASILRSATKDS--LIIIDELGRGTSTYDGFGLAWA 765 (934)
T ss_dssp --------------ECCSEEE-EECC---------CHHHHHHHHHHHHHHHCCTTC--EEEEESCSCSSCHHHHHHHHHH
T ss_pred --------------hHHHHHH-HhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCc--EEEEeCCCCCCCHHHHHHHHHH
Confidence 0000011 223333333445567777888888888 88999 999999 999999988777443
Q ss_pred hcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 315 VVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 315 ~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++..+.. ..|.++|++||+.++.
T Consensus 766 -------il~~l~~-~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 766 -------ISEYIAT-KIGAFCMFATHFHELT 788 (934)
T ss_dssp -------HHHHHHH-TTCCEEEEEESCGGGG
T ss_pred -------HHHHHHh-cCCCEEEEEcCcHHHH
Confidence 7777752 3588999999998764
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.46 E-value=1.5e-14 Score=132.63 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.2
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHH--hhhhhcCCeEEEeecc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLA--YRLKNEGAKILMAAGD 207 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~La--g~l~~~~G~V~l~~~d 207 (372)
.+++|++++|+||||||||||++.|+ +.+.+.++.+.+.+.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 47899999999999999999999999 5545666666665444
No 95
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.44 E-value=9.3e-14 Score=150.27 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 157 KGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 157 ~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
..++++++|++++|++++|+||||+||||+++.++++... +.|.. + .... ..++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-v-pa~~---------------~~i~~------- 715 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-V-PAEE---------------ATIGI------- 715 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-B-SSSE---------------EEEEC-------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-c-cchh---------------hhhhH-------
Confidence 4567899999999999999999999999999999875432 11110 0 0000 00000
Q ss_pred ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHH--hCCCCceEEEEcC-CCCCCHHHHHHHH
Q 017380 236 AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVV--NGAPNEILLVLDG-TTGLNMLPQAREF 312 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral--~~~P~~~lLvLDE-tsglD~~~~~~~~ 312 (372)
++.++ ..+|..+........+|++++.++.++ +.+|. +++||| ++|+|+.....+.
T Consensus 716 ------------------~d~i~-~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~--LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 716 ------------------VDGIF-TRMGAADNIYKGRSTFMEELTDTAEIIRKATSQS--LVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp ------------------CSEEE-EEC----------CCHHHHHHHHHHHHHHCCTTC--EEEEESTTTTSCHHHHHHHH
T ss_pred ------------------HHHHH-HhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHH
Confidence 00011 122333344455667888888333333 78899 999999 9999999887777
Q ss_pred hhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 313 NDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 313 ~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
.. ++..+.. ..|.++|++||++++.
T Consensus 775 ~~-------il~~L~~-~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 775 YA-------TLEYFIR-DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp HH-------HHHHHHH-TTCCEEEEECSCGGGG
T ss_pred HH-------HHHHHHH-hcCCeEEEEeCcHHHH
Confidence 44 7777742 4589999999998764
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.42 E-value=2.6e-13 Score=127.20 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccH
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKA 238 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~ 238 (372)
+++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+.-. .. +....+ +.+
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~---~~-------~~~~~~-v~q------ 77 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VF-------KHKKSI-VNQ------ 77 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS---CC-------CCSSSE-EEE------
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee---ec-------CCccee-eeH------
Confidence 44566 7899999999999999999999999999998 9999997654310 00 000001 111
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcC
Q 017380 239 SSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVG 317 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~ 317 (372)
..+|+.. ..| ...|+++|..+|+ ++++|| + |+......
T Consensus 78 ---------------------~~~gl~~------~~l---~~~la~aL~~~p~--illlDEp~---D~~~~~~~------ 116 (261)
T 2eyu_A 78 ---------------------REVGEDT------KSF---ADALRAALREDPD--VIFVGEMR---DLETVETA------ 116 (261)
T ss_dssp ---------------------EEBTTTB------SCH---HHHHHHHHHHCCS--EEEESCCC---SHHHHHHH------
T ss_pred ---------------------HHhCCCH------HHH---HHHHHHHHhhCCC--EEEeCCCC---CHHHHHHH------
Confidence 0122221 122 2389999999999 999999 7 77664322
Q ss_pred chhhHhhhccccccceeeEeeeeccCC
Q 017380 318 ITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 318 ~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
+... ..|.+|++++|+.+.
T Consensus 117 -----l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 117 -----LRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp -----HHHH---HTTCEEEEEECCSSH
T ss_pred -----HHHH---ccCCEEEEEeCcchH
Confidence 2222 347899999998763
No 97
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.41 E-value=3.5e-13 Score=126.83 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=87.4
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc----------CCeEEEeeccccchhhhhHHHHHHHhhCcceeEecccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE----------GAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEK 235 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~----------~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~ 235 (372)
.+.+|++++|+||||+||||++..+++.+..- ++.|.+...+.. .+++......++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~----~~~~~~r~~~~g~~~------- 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP----PTAIHHRLHALGAHL------- 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC----HHHHHHHHHHHHTTS-------
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC----HHHHHHHHHHHHhhc-------
Confidence 36789999999999999999999999976541 234433322210 011111111111100
Q ss_pred ccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CC--CCCHHHH---H
Q 017380 236 AKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TT--GLNMLPQ---A 309 (372)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-ts--glD~~~~---~ 309 (372)
. ...... +.+.+++.+..+..+..||+|+...+++++.+|+ ++|+|| ++ ++|.... .
T Consensus 95 -~-------------~~~~~~-~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~--livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 95 -S-------------AEERQA-VADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRR--LMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -C-------------HHHHHH-HHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCS--EEEEECGGGGCCSCTTCHHHHH
T ss_pred -C-------------hhhhhh-ccCceEEeecCCCCcccCCHHHHHHHHHhcCCCC--EEEECCHHHhcCCCcCchHHHH
Confidence 0 000111 2244555555566788899999977788889999 999999 88 8886322 3
Q ss_pred HHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 310 REFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 310 ~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
+++. .|..+.. ..|.+||+++|+.+..
T Consensus 158 ~~~~--------~L~~l~~-~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 158 QVIG--------RMEAIAA-DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHH--------HHHHHHH-HHCCEEEEEEEC----
T ss_pred HHHH--------HHHHHHH-HcCCEEEEEecCCCcc
Confidence 4444 5566532 4588999999998764
No 98
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.41 E-value=6.9e-14 Score=135.47 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=43.9
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
++++++.+++|++++|+||||||||||++.|+|+++|++|.|.+.+.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 456788999999999999999999999999999999999999997654
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.40 E-value=3.8e-13 Score=137.95 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=97.1
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeE-EEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHH
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKI-LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLS 243 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V-~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~ 243 (372)
..+.+|++++|+||||+|||||++.++|...++++++ ++...+. ..++.......++.
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-----~~~l~~~~~~~g~~---------------- 334 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-----RAQLLRNAYSWGMD---------------- 334 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-----HHHHHHHHHTTSCC----------------
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-----HHHHHHHHHHcCCC----------------
Confidence 3678999999999999999999999999998876555 4444433 12333222222210
Q ss_pred HHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcCCCCCCHH-----HHHHHHhhh
Q 017380 244 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDGTTGLNML-----PQAREFNDV 315 (372)
Q Consensus 244 ~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDEtsglD~~-----~~~~~~~~~ 315 (372)
.+. +. ..|+....+..+.+||+|++ .+|+++..+|+ +||+|-++++|.. .+..+..
T Consensus 335 ----------~~~-~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~--llilDp~~~Ld~~~~~~~~~~~i~~-- 398 (525)
T 1tf7_A 335 ----------FEE-ME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPA--RIAIDSLSALARGVSNNAFRQFVIG-- 398 (525)
T ss_dssp ----------HHH-HH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCS--EEEEECHHHHTSSSCHHHHHHHHHH--
T ss_pred ----------HHH-HH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCC--EEEEcChHHHHhhCChHHHHHHHHH--
Confidence 001 11 23555666677889999999 99999999999 9999998899977 6655655
Q ss_pred cCchhhHhhhccccccceeeEeeeecc
Q 017380 316 VGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 316 ~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
++..+. +.|.++|+++|+.
T Consensus 399 ------ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 399 ------VTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp ------HHHHHH--HTTCEEEEEEECS
T ss_pred ------HHHHHH--hCCCEEEEEECcc
Confidence 777776 5689999999998
No 100
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.40 E-value=2.4e-13 Score=148.87 Aligned_cols=144 Identities=17% Similarity=0.132 Sum_probs=87.3
Q ss_pred HHHHh-ccCCCCCccceeccC-------CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHH
Q 017380 150 VLDLL-TKKGNKTELQLGYRK-------PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWA 221 (372)
Q Consensus 150 l~~~~-~~~~~~~~isl~i~~-------g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~ 221 (372)
|.+.| +...++++++|++.+ |++++|+||||+||||+++.+ |++.+..
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a----------------------- 816 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA----------------------- 816 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH-----------------------
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh-----------------------
Confidence 55556 455678999999876 899999999999999999999 9987511
Q ss_pred HhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH--HHHHHHhCCCCceEEEEcC
Q 017380 222 ERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK--AVGKVVNGAPNEILLVLDG 299 (372)
Q Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r--~iAral~~~P~~~lLvLDE 299 (372)
+.|.. +++...... -.+.++ ..+|..+........++++++ +++++++.+|. +++|||
T Consensus 817 -qiG~~--Vpq~~~~l~--------------v~d~I~-~rig~~d~~~~~~stf~~em~~~a~al~la~~~s--LlLLDE 876 (1022)
T 2o8b_B 817 -QMGCY--VPAEVCRLT--------------PIDRVF-TRLGASDRIMSGESTFFVELSETASILMHATAHS--LVLVDE 876 (1022)
T ss_dssp -TTTCC--EESSEEEEC--------------CCSBEE-EECC---------CHHHHHHHHHHHHHHHCCTTC--EEEEEC
T ss_pred -heeEE--eccCcCCCC--------------HHHHHH-HHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCc--EEEEEC
Confidence 01110 111100000 000000 011222222222334555555 77888899999 999999
Q ss_pred -CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 300 -TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 300 -tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
++|+|+.....+... ++..+.. ..|.++|++||++++.
T Consensus 877 p~~Gtd~~dg~~~~~~-------il~~L~~-~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANA-------VVKELAE-TIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp TTTTSCHHHHHHHHHH-------HHHHHHH-TSCCEEEEECCCHHHH
T ss_pred CCCCCChHHHHHHHHH-------HHHHHHh-cCCCEEEEEeCCHHHH
Confidence 999999885443333 7888763 3388999999998775
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.37 E-value=2.3e-15 Score=137.21 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=32.1
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
..++++||++++|++++|+||||||||||+++|+|++ | |+|.+ +.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~ 56 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVS 56 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCC
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eec
Confidence 3478999999999999999999999999999999999 5 88988 544
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.37 E-value=3.9e-15 Score=142.58 Aligned_cols=131 Identities=19% Similarity=0.096 Sum_probs=81.7
Q ss_pred HHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhh
Q 017380 145 ALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERT 224 (372)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~ 224 (372)
+-.+++...|+ ..++++++|++++|++++|+||||||||||++.|+|++ +|+|.....+.... .. ....+ -
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~l--f~--~ti~~-~ 172 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHF--WL--ASLAD-T 172 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGG--GG--GGGTT-C
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcccc--cc--ccHHH-H
Confidence 33456666665 34578899999999999999999999999999999999 78996533221000 00 00000 0
Q ss_pred CcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCCCC
Q 017380 225 GCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLN 304 (372)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsglD 304 (372)
++.+ . ..... .+. ..+ +.+ +....+ ..+||+|||.-|||++.+|+ +|| |+++|
T Consensus 173 ni~~-~---~~~~~--~~~------------~~i-~~~-L~~gld--g~~LSgGqkQRARAll~~p~--iLl---Ts~LD 225 (305)
T 2v9p_A 173 RAAL-V---DDATH--ACW------------RYF-DTY-LRNALD--GYPVSIDRKHKAAVQIKAPP--LLV---TSNID 225 (305)
T ss_dssp SCEE-E---EEECH--HHH------------HHH-HHT-TTGGGG--TCCEECCCSSCCCCEECCCC--EEE---EESSC
T ss_pred hhcc-C---ccccH--HHH------------HHH-HHH-hHccCC--ccCcCHHHHHHHHHHhCCCC--EEE---ECCCC
Confidence 1211 1 11110 111 111 221 111112 56899999944999999999 777 99999
Q ss_pred HHHHHHH
Q 017380 305 MLPQARE 311 (372)
Q Consensus 305 ~~~~~~~ 311 (372)
+..+..+
T Consensus 226 ~~~~~~i 232 (305)
T 2v9p_A 226 VQAEDRY 232 (305)
T ss_dssp STTCGGG
T ss_pred HHHHHHH
Confidence 8776443
No 103
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.35 E-value=3e-12 Score=124.20 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred chhhHhHHHHHHH---------HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEe
Q 017380 268 NYSLMEELVACKK---------AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVS 337 (372)
Q Consensus 268 ~~~~~~eLS~G~r---------~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~ 337 (372)
.++.+.+||+||+ ++|++++.+|+ +|+||| |+|||+..+..++. ++.++. ..|.++|+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~--~lllDEp~~~LD~~~~~~l~~--------~l~~~~--~~~~~vi~ 309 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEIS--LLILDEPTPYLDEERRRKLIT--------IMERYL--KKIPQVIL 309 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTC--EEEEECCCTTCCHHHHHHHHH--------HHHHTG--GGSSEEEE
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCC--EEEEECCCCCCCHHHHHHHHH--------HHHHHH--hcCCEEEE
Confidence 3567899999997 46778888999 999999 99999999988887 787775 45779999
Q ss_pred eeeccCC
Q 017380 338 VVDELGI 344 (372)
Q Consensus 338 isH~~~~ 344 (372)
+||+..+
T Consensus 310 ~sH~~~~ 316 (339)
T 3qkt_A 310 VSHDEEL 316 (339)
T ss_dssp EESCGGG
T ss_pred EEChHHH
Confidence 9999654
No 104
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.35 E-value=3.8e-14 Score=136.31 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred cccee-ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC--eEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccH
Q 017380 162 ELQLG-YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA--KILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKA 238 (372)
Q Consensus 162 ~isl~-i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G--~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~ 238 (372)
+++.. +++|++++|+||||||||||+++|+|+++|.+| +|.+...|.+-... ... +...... ....+....
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~----e~~~~~~-~~g~~~~~d 154 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AEL----QRRNLMH-RKGFPESYN 154 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHH----HHTTCTT-CTTSGGGBC
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHH----HHHHHHH-hcCCChHHH
Confidence 34443 789999999999999999999999999999765 57666666432111 111 1111100 000000000
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCH
Q 017380 239 SSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNM 305 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~ 305 (372)
...+...+ +.++ .+..+..+.+||+|++ .+|++++.+|+ +||+|| +..+|+
T Consensus 155 ------------~~~~~~~L-~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~--ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 ------------RRALMRFV-TSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPD--ILILEGLNVLQTG 209 (312)
T ss_dssp ------------HHHHHHHH-HHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCS--EEEEECTTTTCCC
T ss_pred ------------HHHHHHHH-HHhC-CCcccCCcccCChhhhhhhhhHHHhccCCC--EEEECCccccCCc
Confidence 01112222 3334 3333456779999999 78899999999 999999 888875
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.33 E-value=8.5e-15 Score=138.04 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCc--ceeEeccccccHHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGC--EIVVAEGEKAKASSVLSQAVKRG 249 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
.++|+||||||||||++.|+|+..|++|+|.+.+.+..+...........+..++ ...+..... ... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~-----~g~----~~ 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPG-----FGD----QI 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC-------C----CS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechh-----hhh----hc
Confidence 5899999999999999999999999999999977654211000000000000010 000000000 000 00
Q ss_pred hhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhh
Q 017380 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTK 325 (372)
Q Consensus 250 ~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltk 325 (372)
........+.+. ...+..+.+..+||+|++ .+||+++ . +++||| +.|+|+... + ++..
T Consensus 75 ~~~~~~~~i~~~-~~~~~~~~~~~~LS~G~~qrv~iaRal~---~--lllldep~~gL~~lD~-~-----------~l~~ 136 (270)
T 3sop_A 75 NNENCWEPIEKY-INEQYEKFLKEEVNIARKKRIPDTRVHC---C--LYFISPTGHSLRPLDL-E-----------FMKH 136 (270)
T ss_dssp BCTTCSHHHHHH-HHHHHHHHHHHHSCTTCCSSCCCCSCCE---E--EEEECCCSSSCCHHHH-H-----------HHHH
T ss_pred ccHHHHHHHHHH-HHHHHHhhhHHhcCcccchhhhhheeee---e--eEEEecCCCcCCHHHH-H-----------HHHH
Confidence 000000111111 113456678889999998 7777654 3 899999 899998874 2 3444
Q ss_pred ccccccceeeEeeeeccCC
Q 017380 326 LDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 326 ld~t~~gg~vi~isH~~~~ 344 (372)
+. .. .++|.+.|..+.
T Consensus 137 L~--~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 137 LS--KV-VNIIPVIAKADT 152 (270)
T ss_dssp HH--TT-SEEEEEETTGGG
T ss_pred HH--hc-CcEEEEEecccc
Confidence 54 23 677777777664
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.31 E-value=1.3e-12 Score=118.02 Aligned_cols=147 Identities=11% Similarity=-0.006 Sum_probs=80.9
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHH
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQA 245 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 245 (372)
.+++|++++|+||||+||||+++.|++.+.+.+|+|.+.+.+... +++.......+... +.......
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~------ 85 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR----DSIIRQAKQFNWDF---EEYIEKKL------ 85 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCH----HHHHHHHHHTTCCC---GGGBTTTE------
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCH----HHHHHHHHHhcchH---HHHhhCCE------
Confidence 467899999999999999999999999998888999987766521 22222222333321 10000000
Q ss_pred HHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH-HHHHHHhCCCCceEEEEcC-CCCC--CHHHHHHHHhhhcCchhh
Q 017380 246 VKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK-AVGKVVNGAPNEILLVLDG-TTGL--NMLPQAREFNDVVGITGL 321 (372)
Q Consensus 246 ~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r-~iAral~~~P~~~lLvLDE-tsgl--D~~~~~~~~~~~~~~tgi 321 (372)
........ ..+ .......+ .+....+ ..+.+...+|+..++|+|| ++.+ |+..+.+++.
T Consensus 86 ---~~~~~~~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~-------- 148 (235)
T 2w0m_A 86 ---IIIDALMK----EKE-DQWSLVNL-TPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISY-------- 148 (235)
T ss_dssp ---EEEECCC---------CTTBCSSC-CHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHH--------
T ss_pred ---EEEecccc----ccC-ceeeecCC-CHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHH--------
Confidence 00000000 000 00000000 1111111 2222223477666999999 8666 8876666666
Q ss_pred HhhhccccccceeeEeeeeccC
Q 017380 322 ILTKLDGSARGGCVVSVVDELG 343 (372)
Q Consensus 322 iltkld~t~~gg~vi~isH~~~ 343 (372)
.+.++.. +.|.++|+++|+.+
T Consensus 149 ~l~~~~~-~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 149 YLKRVLN-KWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHH-HTTEEEEEEEC---
T ss_pred HHHHHHH-hCCCeEEEEeccCc
Confidence 5666642 45889999999983
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=2.1e-13 Score=121.88 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
|++++|+||||||||||+++|+|+++ ++| |.+.+.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 68899999999999999999999999 888 88765443
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.30 E-value=2e-12 Score=126.11 Aligned_cols=109 Identities=21% Similarity=0.311 Sum_probs=65.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-HHHhcc-CCCCCcc-ceeccCCeEEEEEcCCCCcHHHHH
Q 017380 111 LVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSV-LDLLTK-KGNKTEL-QLGYRKPAVVLIVGVNGGGKTTSL 187 (372)
Q Consensus 111 ~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~-~~~~~~i-sl~i~~g~vi~lvGpNGsGKTTll 187 (372)
...+++..-+.++++...+.+....+.+..++. .+.- ...+.. ...++.+ .+.+++|++++|+|||||||||++
T Consensus 72 ~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 72 EVAGISEGTALKIIQAARKAANLGTFMRADEYL---KKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHH---HHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhcCCCHHHHHHHHHHHhhhccccCCccHHHHH---hhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 346788888888888777665332333333322 1110 011110 0112222 467889999999999999999999
Q ss_pred HHHHhhh--hhcC----Ce-EEEeeccccchhhhhHHHHHHHhhC
Q 017380 188 GKLAYRL--KNEG----AK-ILMAAGDTFRAAASDQLEIWAERTG 225 (372)
Q Consensus 188 ~~Lag~l--~~~~----G~-V~l~~~d~~r~~a~eql~~~~~~~~ 225 (372)
..+++.+ +|+. |+ |++.+.+.++ .+++..+++..+
T Consensus 149 ~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~q~~~ 190 (349)
T 1pzn_A 149 HTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRG 190 (349)
T ss_dssp HHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHHHTTT
T ss_pred HHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHHHHcC
Confidence 9999998 5543 68 6776666543 234444544443
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.30 E-value=2.5e-12 Score=116.22 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=34.0
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-------cCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-------EGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-------~~G~V~l~~~d~ 208 (372)
+++|++++|+||||||||||++.|+|.+.+ .++.|.+.+.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 678999999999999999999999997665 334666655544
No 110
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.24 E-value=9.7e-13 Score=114.19 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
++.+.|+...+++++||++++|++++|+||||||||||++.|+|++ |.+|+|.+.+.+.
T Consensus 12 ~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 4556666545567899999999999999999999999999999999 9999999866554
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.23 E-value=8.6e-12 Score=133.55 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=81.2
Q ss_pred cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccc
Q 017380 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGE 234 (372)
Q Consensus 156 ~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~ 234 (372)
...++++++|+ ++|++++|+||||+||||+++.|+|+... +.|.. + ..+. ..+++...+...
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-v-pa~~-------------~~i~~~~~i~~~- 656 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-V-PAQK-------------VEIGPIDRIFTR- 656 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-B-SSSE-------------EEECCCCEEEEE-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-c-chhc-------------ccceeHHHHHhh-
Confidence 34567888998 88999999999999999999999998643 33311 0 0000 001110000000
Q ss_pred cccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHH--HhCCCCceEEEEcC-CCCCCHHHHHHH
Q 017380 235 KAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV--VNGAPNEILLVLDG-TTGLNMLPQARE 311 (372)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAra--l~~~P~~~lLvLDE-tsglD~~~~~~~ 311 (372)
.|..+........++.+++.++.+ .+.+|+ +++||| ++|+|+.....+
T Consensus 657 ---------------------------~~~~d~l~~~~stf~~e~~~~~~il~~a~~ps--LlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 657 ---------------------------VGAADDLASGRSTFMVEMTETANILHNATEYS--LVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ---------------------------EC-----------CHHHHHHHHHHHHHCCTTE--EEEEESCCCCSSSSHHHHH
T ss_pred ---------------------------CCHHHHHHhhhhhhhHHHHHHHHHHHhccCCC--EEEEECCCCCCChhHHHHH
Confidence 000000001112234444433333 367898 999999 999998877665
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeeccCCc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~p 345 (372)
... ++..+.+ ..|.++|++||+.++.
T Consensus 708 ~~~-------ll~~l~~-~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 708 AWA-------CAENLAN-KIKALTLFATHYFELT 733 (800)
T ss_dssp HHH-------HHHHHHH-TTCCEEEEECSCGGGG
T ss_pred HHH-------HHHHHHh-ccCCeEEEEeCCHHHH
Confidence 333 7777752 2488999999998764
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.23 E-value=1.9e-11 Score=119.48 Aligned_cols=42 Identities=31% Similarity=0.402 Sum_probs=35.0
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDT 208 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~ 208 (372)
...+|++++|+||||||||||++.|+|++.|+ +|.|.. ..|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t-~ed~ 161 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT-IEDP 161 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE-EESS
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE-ccCc
Confidence 45678899999999999999999999999987 667665 3443
No 113
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.19 E-value=6.7e-11 Score=115.67 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=57.9
Q ss_pred hhhHh-HHHHHHH---HHHHHHh---------CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 269 YSLME-ELVACKK---AVGKVVN---------GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 269 ~~~~~-eLS~G~r---~iAral~---------~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
+..+. .||+||+ +||++|+ .+|+ +|+||| |++||+..+..++. .+.++. .+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~--iLLLDEp~s~LD~~~~~~l~~--------~l~~~~-----qt 323 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDP--VLLLDDFTAELDPHRRQYLLD--------LAASVP-----QA 323 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCC--EEEECCGGGCCCHHHHHHHHH--------HHHHSS-----EE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCC--EEEEeCccccCCHHHHHHHHH--------HHHhcC-----cE
Confidence 45667 8999999 9999999 8999 999999 99999999988887 666552 68
Q ss_pred eEeeeeccC--CceeeeccCcccC
Q 017380 335 VVSVVDELG--IPVKFVGVGEGVE 356 (372)
Q Consensus 335 vi~isH~~~--~pi~~i~~Ge~v~ 356 (372)
+|.++|.-. --+..+..|+.+.
T Consensus 324 ~i~~th~~~~~~~i~~l~~G~i~~ 347 (359)
T 2o5v_A 324 IVTGTELAPGAALTLRAQAGRFTP 347 (359)
T ss_dssp EEEESSCCTTCSEEEEEETTEEEE
T ss_pred EEEEEeccccCCEEEEEECCEEEe
Confidence 999999421 2345677887763
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=1.4e-11 Score=107.99 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=31.0
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA 199 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G 199 (372)
+.+.+|+.++|+||||+||||+++.|++.+.+..|
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 45667999999999999999999999999987655
No 115
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.16 E-value=5.9e-12 Score=116.26 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.4
Q ss_pred cCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 156 KKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 156 ~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
...+++++||++++|++++|+|||||||||++++|+|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999999999999999999999999999999987
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.13 E-value=2.9e-12 Score=122.44 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh-hhhcCCeEEEeeccccchhhhhHHHHHH---Hh
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR-LKNEGAKILMAAGDTFRAAASDQLEIWA---ER 223 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~-l~~~~G~V~l~~~d~~r~~a~eql~~~~---~~ 223 (372)
++|.+.|+...++++++|++ +|+||||||||||++.|+|. +.|.+| |.+.+.+.... .+ ....+ +.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVEIEE 71 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC-
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEEecC
Confidence 36778888777888998876 99999999999999999997 778887 76654432110 00 00000 00
Q ss_pred hCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-
Q 017380 224 TGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNEILLVLDG- 299 (372)
Q Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE- 299 (372)
.+....+.. .+...... .... .+.+..+. +. +.+..+.++.++|+|+| .+||++ .+|++||
T Consensus 72 ~~~~~~ltv---~Dt~g~~~-~~~~--~e~~~~l~-~~--l~~~~~~~~~~~sgg~rqrv~~ara~------~ll~ldeP 136 (301)
T 2qnr_A 72 RGVKLRLTV---VDTPGYGD-AINC--RDCFKTII-SY--IDEQFERYLHDESGLNRRHIIDNRVH------CCFYFISP 136 (301)
T ss_dssp --CCEEEEE---EEEC--------------CTTHH-HH--HHHHHHHHHHHHTSSCCTTCCCCCCC------EEEEEECS
T ss_pred CCcccCcch---hhhhhhhh-hcCc--HHHHHHHH-HH--HHHHHHHHHHHhCHHhhhhhhhhhhh------heeeeecC
Confidence 011000000 01000000 0000 00111111 11 11234578889999987 333332 3888999
Q ss_pred CC-CCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeeccCC
Q 017380 300 TT-GLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGI 344 (372)
Q Consensus 300 ts-glD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~~~ 344 (372)
|. ++|+... + ++.++.. ..+.++|+..||+.-
T Consensus 137 t~~~Ld~~~~-~-----------~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 137 FGHGLKPLDV-A-----------FMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp SSSSCCHHHH-H-----------HHHHHTT-TSCEEEEECCGGGSC
T ss_pred cccCCCHHHH-H-----------HHHHHHh-cCCEEEEEEeCCCCC
Confidence 77 5999874 2 4444442 347788899999853
No 117
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.12 E-value=2.2e-11 Score=129.69 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=34.4
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCeE
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-NEGAKI 201 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~~~G~V 201 (372)
.+++|++|+ |++++|+||||+||||+++.|+|+.. ++.|.+
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 345677776 99999999999999999999999975 677764
No 118
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=5.4e-12 Score=122.44 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=50.5
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
+.+.|+....+++++|++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.|..
T Consensus 35 ~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 35 ADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred cccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 334443333456788999999999999999999999999999999999999999988764
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.06 E-value=4e-10 Score=110.71 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=37.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d 207 (372)
+.+|++++|+||||||||||++.|+|++.|+ +|+|.+.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 6789999999999999999999999999997 8999876543
No 120
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.02 E-value=1.3e-12 Score=117.22 Aligned_cols=144 Identities=19% Similarity=0.123 Sum_probs=80.6
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHH
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAV 246 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 246 (372)
.++|++++|+|||||||||+++.|+|++.| .|.+...|.+-.... .+..+ ......+ ..+.......
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~~----- 69 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG-HLPLE-ERLRVNY---DHPDAFDLAL----- 69 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT-TSCHH-HHHHSCT---TSGGGBCHHH-----
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc-cccHH-HhcCCCC---CChhhhhHHH-----
Confidence 358999999999999999999999999876 566655554211000 00000 0111100 0011110011
Q ss_pred HhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH-------HHHHHHhCCCCceEEEEcC-CCC-------CCHHHHHHH
Q 017380 247 KRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK-------AVGKVVNGAPNEILLVLDG-TTG-------LNMLPQARE 311 (372)
Q Consensus 247 ~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r-------~iAral~~~P~~~lLvLDE-tsg-------lD~~~~~~~ 311 (372)
....+ +.+++.+....+..++|.|++ .++++++.+|. ++++|| +++ +|+.....+
T Consensus 70 -------~~~~l-~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~--ll~~de~~~~~~d~~i~ld~~~~~~~ 139 (211)
T 3asz_A 70 -------YLEHA-QALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGI--LVLYPKELRDLMDLKVFVDADADERF 139 (211)
T ss_dssp -------HHHHH-HHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEEST--TTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred -------HHHHH-HHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeeh--hhccCHHHHHhcCEEEEEeCCHHHHH
Confidence 11111 233444444445667777753 45677777888 888899 888 786666555
Q ss_pred HhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 312 FNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 312 ~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
.. .+.+... .+|.+++.++|++
T Consensus 140 ~r--------~l~r~~~-~~g~t~~~~~~~~ 161 (211)
T 3asz_A 140 IR--------RLKRDVL-ERGRSLEGVVAQY 161 (211)
T ss_dssp HH--------HHHHHHH-HSCCCHHHHHHHH
T ss_pred HH--------HHHHHHH-HhCCCHHHHHHHH
Confidence 55 3333211 3467888888874
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=5.6e-10 Score=95.59 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEG 198 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~ 198 (372)
+|+.++|+||||+|||||++.|++.+.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999998753
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.99 E-value=7.2e-11 Score=115.44 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=38.7
Q ss_pred CccceeccC--CeEEEEEcCCCCcHHHHHHHHHhhhhhcC----CeEEE
Q 017380 161 TELQLGYRK--PAVVLIVGVNGGGKTTSLGKLAYRLKNEG----AKILM 203 (372)
Q Consensus 161 ~~isl~i~~--g~vi~lvGpNGsGKTTll~~Lag~l~~~~----G~V~l 203 (372)
..+++++.+ |+.++|+||||||||||+++|+|++.|+. |+|.+
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 467888999 99999999999999999999999999987 76655
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.98 E-value=4e-09 Score=94.36 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|++++|+||||+||||++..|++ +.++.|.+.+.+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 57899999999999999999999999 445666665554
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.98 E-value=2e-10 Score=104.69 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=34.1
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeEEEeecc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKILMAAGD 207 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V~l~~~d 207 (372)
..++|++++|+||||||||||+++|+|.++| ..|.|.+.+.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 4578999999999999999999999999985 56778775543
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.95 E-value=3.1e-09 Score=96.62 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=33.2
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhh--hhh-----cCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYR--LKN-----EGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~--l~~-----~~G~V~l~~~d~ 208 (372)
+++|++++|+||||+||||++..|++. +++ .+|.+++.+.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 568999999999999999999999994 444 345666655553
No 126
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=3.3e-10 Score=100.81 Aligned_cols=152 Identities=13% Similarity=-0.014 Sum_probs=79.4
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh-----hhcCCeEEEee----------ccccch-
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL-----KNEGAKILMAA----------GDTFRA- 211 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l-----~~~~G~V~l~~----------~d~~r~- 211 (372)
+++.+.|+. ..+++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+.+ .|+--.
T Consensus 7 ~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 7 QQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp ----CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 577777864 44555 788899999999999999999999999987 66666554311 011000
Q ss_pred ----------hhhhHHHHHHHh-hCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCcc-chhhHhHHHHHH
Q 017380 212 ----------AASDQLEIWAER-TGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHT-NYSLMEELVACK 279 (372)
Q Consensus 212 ----------~a~eql~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~-~~~~~~eLS~G~ 279 (372)
.....+..+.+. ......+.......+..... .....++ ...++... ..+++..+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--------~~~~~~~-~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD--------QQMIEWA-VDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--------HHHHHHH-HHTTCCEEEEEECGGGSCHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH--------HHHHHHH-HHcCCCeEEEEecccCCCchh
Confidence 000111122211 11111011111111000000 0011112 23455433 256778889887
Q ss_pred H----HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHh
Q 017380 280 K----AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFN 313 (372)
Q Consensus 280 r----~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~ 313 (372)
+ ..+++++.+|. ++++|| ++++|.....+++.
T Consensus 155 ~~~~~~~~~~~~~~~~--~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 155 RKAQLNMVREAVLAFN--GDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp HHHHHHHHHHHHGGGC--SCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCCceEEEeecCCCCHHHHHH
Confidence 5 56777888888 788999 99999888877777
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.92 E-value=1.1e-09 Score=106.72 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=108.3
Q ss_pred HHHHhhHHHHHHhHH-HHHHHHhhhc-ccCcHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHHHHH-cCCCC
Q 017380 71 EKIFSGFSKTRDNLA-VIDELLLYWN-LADTDKVLDELEEA----------LLVSDFGPRITIKIVESLRDDIL-AGKLK 137 (372)
Q Consensus 71 ~~~~~~l~~~~~~l~-~~~~~~~~~~-~~~~~~~~~~l~~~----------L~~~dv~~~~~~~i~~~~~~~~~-~~~~~ 137 (372)
.++.++|.++++.++ .+.+++..+. ..+.++.++++++. |-..|+..+.+.++.....+... .....
T Consensus 44 ~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
T 2e87_A 44 LREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPN 123 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 356778888888886 5777776554 34557888888844 44557777777666655544332 11111
Q ss_pred ChhhHHHHHHHHHHHHhccCC-----------CCCccceec-cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee
Q 017380 138 SGPDIKDALKNSVLDLLTKKG-----------NKTELQLGY-RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205 (372)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~-----------~~~~isl~i-~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~ 205 (372)
..+..+......+...+.... ...... .+ ...-.++++|++|||||||++.|++... .. +
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~------~~-~ 195 (357)
T 2e87_A 124 EIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLP-VVDLEIPTVVIAGHPNVGKSTLLKALTTAKP------EI-A 195 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSC-CCCSSSCEEEEECSTTSSHHHHHHHHCSSCC------EE-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCCCCEEEEECCCCCCHHHHHHHHhCCCC------cc-C
Confidence 111122222222222211000 000000 11 2456899999999999999999988542 11 1
Q ss_pred ccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHH
Q 017380 206 GDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKV 285 (372)
Q Consensus 206 ~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAra 285 (372)
...+. ...... .... .......+.||+|..+ ..+.+++++++....+
T Consensus 196 ~~~~~------------t~~~~~--~~~~----------------~~~~~~~l~Dt~G~~~---~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 196 SYPFT------------TRGINV--GQFE----------------DGYFRYQIIDTPGLLD---RPISERNEIEKQAILA 242 (357)
T ss_dssp CCTTC------------SSCEEE--EEEE----------------ETTEEEEEEECTTTSS---SCSTTSCHHHHHHHHG
T ss_pred CCCCe------------eeceeE--EEEE----------------ecCceEEEEeCCCccc---cchhhhhHHHHHHHHH
Confidence 11000 000000 0000 0011233568999765 3445667776622225
Q ss_pred HhCCCCceEEEEcC--CCCCCHHHHHHHHh
Q 017380 286 VNGAPNEILLVLDG--TTGLNMLPQAREFN 313 (372)
Q Consensus 286 l~~~P~~~lLvLDE--tsglD~~~~~~~~~ 313 (372)
+...++.+++|+|. ..++|...+...+.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHH
Confidence 55566777999995 56778887766666
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=3.4e-09 Score=102.14 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=75.1
Q ss_pred EEEEcCCCCcHHHHHHHHHh-hhhhcCCeEEEeeccccchhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAY-RLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRGKE 251 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag-~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (372)
+.|+||||+||||+++.|++ ++.++.|.|.+.+.+...... ...........+. +.... ... .. . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~-~~~-~~-~------~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYH-LEITP-SDM-GN-N------DR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSE-EEECC-C------C------CH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccce-EEecH-hhc-CC-c------ch
Confidence 89999999999999999999 678888999886654321100 0000000000111 10000 000 00 0 00
Q ss_pred hchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccc
Q 017380 252 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSA 330 (372)
Q Consensus 252 ~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~ 330 (372)
......+.+.....+. .... +||+ +..+|+ ++++|| +. +|...+..++. ++.+. .
T Consensus 107 ~~~~~~i~~~~~~~~~-~~~~-~ls~--------l~~~~~--vlilDE~~~-L~~~~~~~L~~--------~le~~---~ 162 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQV-DFQD-SKDG--------LAHRYK--CVIINEANS-LTKDAQAALRR--------TMEKY---S 162 (354)
T ss_dssp HHHHHHHHHHTTTTC----------------------CCE--EEEEECTTS-SCHHHHHHHHH--------HHHHS---T
T ss_pred HHHHHHHHHHHHhccc-cccc-cccc--------cCCCCe--EEEEeCccc-cCHHHHHHHHH--------HHHhh---c
Confidence 0011111111111111 1111 4555 345788 999999 65 99988866666 66655 3
Q ss_pred cceeeEeeeeccCCceeee-ccCcccCCCCCCCHHHHHHHh
Q 017380 331 RGGCVVSVVDELGIPVKFV-GVGEGVEDLQPFDAEAFVNAI 370 (372)
Q Consensus 331 ~gg~vi~isH~~~~pi~~i-~~Ge~v~Dl~~~~~~~~v~~l 370 (372)
.+.++|+++|+......-+ ...+ +-++.+.+.+++...|
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~-~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCL-LIRCPAPSDSEISTIL 202 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSE-EEECCCCCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhce-EEecCCcCHHHHHHHH
Confidence 4688999999976533222 2222 2357777777765543
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.83 E-value=7.8e-08 Score=95.24 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=59.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhccCCCCCccc--e--eccCCeEEEEEcCCCCcHHHH
Q 017380 111 LVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTKKGNKTELQ--L--GYRKPAVVLIVGVNGGGKTTS 186 (372)
Q Consensus 111 ~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~is--l--~i~~g~vi~lvGpNGsGKTTl 186 (372)
...+++..-+.+|++.+++... ..+.+..++.+.-. . ...+. .....++ + -+++|+++.|+||||+|||||
T Consensus 120 ~~~gis~~~~~~i~~~a~~~~~-~~~~ta~~l~~~~~-~-~~~i~--TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 120 EIKGISEAKADKLLNEAARLVP-MGFVTAADFHMRRS-E-LICLT--TGSKNLDTLLGGGVETGSITELFGEFRTGKSQL 194 (400)
T ss_dssp TSTTCCHHHHHHHHHHHHHHSC-CSCCCHHHHHHHHH-T-SCEEC--CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcc-ccCCCHHHHHhhhc-c-CCccc--cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHH
Confidence 3458888888888888776442 23334333221110 0 00010 1111111 1 357899999999999999999
Q ss_pred HHHHH--hhhhhc----CC-eEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 187 LGKLA--YRLKNE----GA-KILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 187 l~~La--g~l~~~----~G-~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
+..|+ +..+++ ++ .|++.+.+.++. ++++.+++++++
T Consensus 195 l~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~a~~~gl 238 (400)
T 3lda_A 195 CHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSIAQRFGL 238 (400)
T ss_dssp HHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHHHHHTTC
T ss_pred HHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHHHHHcCC
Confidence 99654 555442 23 556655555443 234445556554
No 130
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.82 E-value=2.4e-10 Score=119.20 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=71.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeecccc--chhhhhHHHHHHHhhCcceeEeccccccHHHHHHHHHHhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDTF--RAAASDQLEIWAERTGCEIVVAEGEKAKASSVLSQAVKRG 249 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~~--r~~a~eql~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 249 (372)
++|||||||||||+++.|+|++.| ++|.|.+.+.+.. +... ...|...+++ +.+.....+...+.+.+...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~---~~~~~~~i~~---v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVN---EDKWRGKVSY---QDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSS---SSCCEEEESC---C---CCCCCHHHHHTTHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCc---cccceeEEee---ecccccCCCHHHHHHHHHHH
Confidence 999999999999999999999988 7999988776631 1110 0112222232 23333333333333332221
Q ss_pred hhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCC-------CCCCHHHHHHHHhhhcCchhhH
Q 017380 250 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGT-------TGLNMLPQAREFNDVVGITGLI 322 (372)
Q Consensus 250 ~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEt-------sglD~~~~~~~~~~~~~~tgii 322 (372)
.. ..-....+..... + .++.+....|+ ++++||- +|+|+..+..+.. +
T Consensus 122 ~~----~~~~~~~~~s~~~---i--------~l~i~~~~~p~--LlLlDePGi~~~~t~~LD~~~~~~i~~--------l 176 (608)
T 3szr_A 122 QN----AIAGEGMGISHEL---I--------TLEISSRDVPD--LTLIDLPGITRVAVGNQPADIGYKIKT--------L 176 (608)
T ss_dssp HH----HHHCSSSCCCSCC---E--------EEEEEESSSCC--EEEEECCC------CCSSCSHHHHHHH--------H
T ss_pred HH----HhcCCccccchHH---H--------HHHhcCCCCCc--eeEeeCCCccccccCCCCHHHHHHHHH--------H
Confidence 00 0000000111100 0 11112234788 9999984 6788777766666 6
Q ss_pred hhhccccccceeeEeeeeccCCc
Q 017380 323 LTKLDGSARGGCVVSVVDELGIP 345 (372)
Q Consensus 323 ltkld~t~~gg~vi~isH~~~~p 345 (372)
+.++-....+.++++++|+++..
T Consensus 177 i~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 177 IKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHhcCCCCceEEEeccchhc
Confidence 66643224467778888887743
No 131
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.81 E-value=1.1e-09 Score=110.89 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=46.7
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
.++++++|++++ ++++|+||||||||||+++|+|+++|++|+|.+.+.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 467899999999 999999999999999999999999999999999876643
No 132
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.81 E-value=4.8e-09 Score=89.86 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=55.2
Q ss_pred chhhHhHHHHHHH---HH------HHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEe
Q 017380 268 NYSLMEELVACKK---AV------GKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVS 337 (372)
Q Consensus 268 ~~~~~~eLS~G~r---~i------Aral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~ 337 (372)
.++.+.+||+||+ +| ||+++.+|+ +|+||| |+|+|+..+..+.. ++.++. ..|.+||+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~--lllLDEPt~~LD~~~~~~l~~--------~l~~~~--~~~~tiii 118 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEIS--LLILDEPTPYLDEERRRKLIT--------IMERYL--KKIPQVIL 118 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCS--EEEEESCSCTTCHHHHHHHHH--------HHHHTG--GGSSEEEE
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCC--EEEEECCCccCCHHHHHHHHH--------HHHHHH--ccCCEEEE
Confidence 4678899999999 44 489999999 999999 99999999987777 788775 34789999
Q ss_pred eeeccCC
Q 017380 338 VVDELGI 344 (372)
Q Consensus 338 isH~~~~ 344 (372)
+||+..+
T Consensus 119 vsH~~~~ 125 (148)
T 1f2t_B 119 VSHDEEL 125 (148)
T ss_dssp EESCGGG
T ss_pred EEChHHH
Confidence 9999853
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=8.6e-10 Score=109.84 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHhccCCCCCccceeccCCeE--EEEEcCCCCcHHHHHHHHHhhh
Q 017380 152 DLLTKKGNKTELQLGYRKPAV--VLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 152 ~~~~~~~~~~~isl~i~~g~v--i~lvGpNGsGKTTll~~Lag~l 194 (372)
+.|+... +++++|++++|++ ++|+||||||||||++.|+|+.
T Consensus 23 ~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 23 VGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4566555 7899999999999 9999999999999999999984
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.78 E-value=3.5e-10 Score=99.59 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
|++++|+|||||||||+++.|++ +.+|.|.+.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999987 667889885543
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.77 E-value=2.4e-09 Score=102.26 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=37.8
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~d~~ 209 (372)
.+|++++|+|||||||||++++|+|++. |++|+|.+.+.|-+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 6899999999999999999999999998 99999999665543
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.77 E-value=5.1e-11 Score=109.85 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---hhhhhcCCeEEEee
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLA---YRLKNEGAKILMAA 205 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~La---g~l~~~~G~V~l~~ 205 (372)
++++++|+|||||||||+++.|+ |+..++.|+|.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 47899999999999999999999 88888877776643
No 137
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.76 E-value=6.9e-09 Score=112.24 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=66.7
Q ss_pred HhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 260 DTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 260 dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
..+|+.+. .++.+.+|||||+ .|||+|+.+|+..+||||| |+|||+..+.+++. +|.++. +.|.|
T Consensus 449 ~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~--------~L~~L~--~~G~T 518 (916)
T 3pih_A 449 VDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK--------TLKKLR--DLGNT 518 (916)
T ss_dssp HTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH--------HHHHTT--TTTCE
T ss_pred HHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH--------HHHHHH--hcCCE
Confidence 46788764 5889999999999 9999999977666999999 99999999988888 889887 56999
Q ss_pred eEeeeeccCCc
Q 017380 335 VVSVVDELGIP 345 (372)
Q Consensus 335 vi~isH~~~~p 345 (372)
||+|+||++..
T Consensus 519 vivVtHd~~~~ 529 (916)
T 3pih_A 519 VIVVEHDEEVI 529 (916)
T ss_dssp EEEECCCHHHH
T ss_pred EEEEeCCHHHH
Confidence 99999998764
No 138
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.75 E-value=2.2e-09 Score=104.95 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=46.8
Q ss_pred HhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 153 LLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 153 ~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
.|......++++|.+++|++++|+||||||||||++.|+|+++|++|.|.+.+.
T Consensus 158 ~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 158 LKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 344434457889999999999999999999999999999999999999999654
No 139
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.73 E-value=1.4e-08 Score=97.37 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh--------hhcCCeEEEeeccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL--------KNEGAKILMAAGDT 208 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l--------~~~~G~V~l~~~d~ 208 (372)
++++|+|+|||||||+++.|+|.. .++.|+|.+++.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 689999999999999999999987 67889999977654
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.67 E-value=5.4e-09 Score=104.08 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++|+++.+++++|||+||||||||++.|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999999999999999999983
No 141
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.67 E-value=8.4e-09 Score=110.67 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=67.0
Q ss_pred HhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 260 DTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 260 dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
+.+|+.+. .++.+.+||+||+ .||++|..+|+..+||||| |++||+.....++. ++.++. +.|++
T Consensus 364 ~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~--------~l~~L~--~~G~T 433 (842)
T 2vf7_A 364 LHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS--------ALENLK--RGGNS 433 (842)
T ss_dssp HHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH--------HHHHHH--TTTCE
T ss_pred HhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH--------HHHHHH--HcCCE
Confidence 57799765 6899999999999 9999999998434999999 99999999988888 899997 57999
Q ss_pred eEeeeeccCCc
Q 017380 335 VVSVVDELGIP 345 (372)
Q Consensus 335 vi~isH~~~~p 345 (372)
||+|+|++++.
T Consensus 434 VIvVeHdl~~l 444 (842)
T 2vf7_A 434 LFVVEHDLDVI 444 (842)
T ss_dssp EEEECCCHHHH
T ss_pred EEEEcCCHHHH
Confidence 99999999753
No 142
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.66 E-value=6.1e-08 Score=88.04 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=34.8
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.+++|++++|+||||+||||++..++....+.++.|.+.+.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3678999999999999999998877766666677777766654
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=6.1e-09 Score=94.79 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.8
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHH-hhhh
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLA-YRLK 195 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~La-g~l~ 195 (372)
..++||++++|++++|+|||||||||++++|+ ++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56899999999999999999999999999999 9983
No 144
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.61 E-value=4e-09 Score=105.04 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 148 NSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 148 ~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
++|.+.|+...++++++|++ +|+|+||||||||++.|+|...+.
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~ 58 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS 58 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC
T ss_pred EecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC
Confidence 45666777777788999875 999999999999999999998753
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=9.2e-07 Score=88.79 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=38.1
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccc
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDT 208 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~ 208 (372)
...+.+|+++.|.|++|+||||++..+++...+. +..|.+.+.+.
T Consensus 197 ~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 197 TSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp HSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred cCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3457899999999999999999999999988874 55888877664
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.58 E-value=2.7e-08 Score=88.17 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.7
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
|+++.+|++++|+|||||||||++++|+|+++ .+.+.+.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceec
Confidence 35567899999999999999999999999974 455544443
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.57 E-value=3.5e-08 Score=86.54 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=34.5
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.+++|++++|+|||||||||+++.|++. +..|.|.+.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 3578999999999999999999999998 677899986544
No 148
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.51 E-value=7e-08 Score=104.28 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred HHhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccce
Q 017380 259 CDTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGG 333 (372)
Q Consensus 259 ~dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg 333 (372)
++.+|+.+. .++.+.+||+||+ .||++|..+|...+||||| |+|||+....+++. +|.++. +.|.
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~--------~L~~Lr--~~G~ 557 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA--------TLKSMR--DLGN 557 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH--------HHHHHH--TTTC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH--------HHHHHH--hCCC
Confidence 367799765 6899999999999 9999999985222999999 99999999988888 899996 5799
Q ss_pred eeEeeeeccCCc-----eeee------ccCccc
Q 017380 334 CVVSVVDELGIP-----VKFV------GVGEGV 355 (372)
Q Consensus 334 ~vi~isH~~~~p-----i~~i------~~Ge~v 355 (372)
|||+|+|+++.. +..+ ..|+.+
T Consensus 558 TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv 590 (972)
T 2r6f_A 558 TLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVV 590 (972)
T ss_dssp EEEEECCCHHHHHSCSEEEEECSSSGGGCCSEE
T ss_pred EEEEEecCHHHHHhCCEEEEeCCCccCCCCEEE
Confidence 999999999765 4556 356655
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.50 E-value=9.2e-08 Score=103.63 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=69.0
Q ss_pred HhhCCCcc-chhhHhHHHHHHH---HHHHHHhCCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhcccccccee
Q 017380 260 DTSGRLHT-NYSLMEELVACKK---AVGKVVNGAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGC 334 (372)
Q Consensus 260 dt~G~~~~-~~~~~~eLS~G~r---~iAral~~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~ 334 (372)
+.+|+.+. .++.+.+||+||+ .||++|..+|...+||||| |+|||+....+++. +|.++. +.|.|
T Consensus 506 ~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~--------~L~~Lr--~~G~T 575 (993)
T 2ygr_A 506 LDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE--------TLTRLR--DLGNT 575 (993)
T ss_dssp HHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH--------HHHHHH--HTTCE
T ss_pred hhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH--------HHHHHH--HcCCE
Confidence 57798765 6889999999999 9999999985222999999 99999999988888 899997 57999
Q ss_pred eEeeeeccCCc-----eeeec
Q 017380 335 VVSVVDELGIP-----VKFVG 350 (372)
Q Consensus 335 vi~isH~~~~p-----i~~i~ 350 (372)
||+|+||++.. +..++
T Consensus 576 VIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 576 LIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp EEEECCCHHHHHTCSEEEEEC
T ss_pred EEEECCCHHHHHhCCEEEEec
Confidence 99999999764 55663
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.48 E-value=8.1e-08 Score=90.18 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch--h-hhhHH
Q 017380 141 DIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA--A-ASDQL 217 (372)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~--~-a~eql 217 (372)
++++.+.+.+..-|+....++++++.+++| ++|+||||+||||+++.|+|.+.+ +.|.+.+.+.... + ....+
T Consensus 17 ~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i 92 (274)
T 2x8a_A 17 DIREELTMAILAPVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAV 92 (274)
T ss_dssp HHHHHHHHHHTHHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHH
Confidence 344555555544455444456778888777 999999999999999999999876 5788877665332 1 11122
Q ss_pred HHHHHh--hCcceeEeccccccHHHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHH---HHHHHHhCCCCc
Q 017380 218 EIWAER--TGCEIVVAEGEKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKK---AVGKVVNGAPNE 292 (372)
Q Consensus 218 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r---~iAral~~~P~~ 292 (372)
....+. ...|..+..+....... .. ... +.-......++++.+||+|++ .+++++.++|+
T Consensus 93 ~~vf~~a~~~~p~i~~~Deid~~~~-~r---------~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~- 157 (274)
T 2x8a_A 93 RQVFQRAKNSAPCVIFFDEVDALCP-RR---------SDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD- 157 (274)
T ss_dssp HHHHHHHHHTCSEEEEEETCTTTCC-----------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG-
T ss_pred HHHHHHHHhcCCCeEeeehhhhhhc-cc---------CCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChh-
Confidence 222222 12222122211111000 00 000 000122345678889999987 67777778887
Q ss_pred eEEEEcC-CC------------CCCHHHHHHHHh
Q 017380 293 ILLVLDG-TT------------GLNMLPQAREFN 313 (372)
Q Consensus 293 ~lLvLDE-ts------------glD~~~~~~~~~ 313 (372)
+ ||+ .. -.|...+.+++.
T Consensus 158 -~--LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 158 -I--IDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp -G--SCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred -h--CCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 4 376 32 125666666665
No 151
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.47 E-value=1.1e-07 Score=85.22 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
.++|++++|+||||||||||+++|+|++.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3589999999999999999999999999975
No 152
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.44 E-value=8.6e-08 Score=90.91 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=33.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC---CeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG---AKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~---G~V~l~~~d~~ 209 (372)
.++.+++|+|++||||||++++|++++.+.+ ..+.+...|.|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3688999999999999999999999998752 23445356544
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.44 E-value=4.5e-08 Score=87.11 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeE--EEeec
Q 017380 152 DLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKI--LMAAG 206 (372)
Q Consensus 152 ~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V--~l~~~ 206 (372)
...+.....+..++..++|++++|+|||||||||+.+.|++.+. ..|.+ .+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d 62 (200)
T 3uie_A 7 WHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD 62 (200)
T ss_dssp ---CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred ccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence 33333333344556667899999999999999999999999998 66777 66443
No 154
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.42 E-value=7.2e-08 Score=98.38 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=41.7
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++++.+++|++++|+||||||||||++.|+|+++|+.|.|.+.+.+
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 45667778999999999999999999999999999999999986654
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.42 E-value=7.6e-08 Score=92.56 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh--hcCCeEEEeeccccch
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK--NEGAKILMAAGDTFRA 211 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~--~~~G~V~l~~~d~~r~ 211 (372)
.+-+++|+|||||||||++++|++++. |++|+|.+...|.|-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 456999999999999999999999998 4678898888887643
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.39 E-value=2.6e-07 Score=82.32 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=39.4
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
..+|.+++|+|+|||||||+++.|++.+.+.+|.|.+.+.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 45789999999999999999999999999999999987777654
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.38 E-value=1.5e-06 Score=84.43 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|+++.|.||||+||||++..++......+++|.+.+.+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45899999999999999999999998877777888776654
No 158
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=8.7e-08 Score=91.18 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=31.1
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE---eeccccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM---AAGDTFR 210 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l---~~~d~~r 210 (372)
++..|++++|+||||||||||++.|+|+.+|+.|+|.+ .|.++.+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence 34578999999999999999999999999999999998 6666543
No 159
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.38 E-value=2.3e-07 Score=92.36 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=36.8
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.+|++++|+||||||||||++.|+|++.|.+|+|.+.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 5789999999999999999999999999999999997654
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.37 E-value=1.2e-07 Score=84.56 Aligned_cols=28 Identities=36% Similarity=0.474 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
++|++++|+|||||||||++++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999999985
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.37 E-value=1.3e-07 Score=83.24 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
|++++|+|||||||||++++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999843
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.36 E-value=1.5e-08 Score=92.91 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.3
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
++++.+ ++++|+|||||||||++++|+|++.|++|.|.+.+.+.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 455555 89999999999999999999999999999999977654
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.35 E-value=1e-07 Score=83.94 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
-.++|+|+||||||||++.++|...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 36899999999999999999998754
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.35 E-value=4.7e-07 Score=80.41 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=32.7
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
..++|++++|+|||||||||+++.|++.+ |.+.+.+.+..
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence 34579999999999999999999999987 78888665543
No 165
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.30 E-value=1.8e-07 Score=90.53 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=43.2
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++++...++.+++|+|+||+||||+++.|++.+.+.+++|.+.+.|..+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 4556667899999999999999999999999999999999998888754
No 166
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.29 E-value=8e-07 Score=77.89 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=51.9
Q ss_pred chhhHhHHHHHHH---HHHHHHhC----CCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeee
Q 017380 268 NYSLMEELVACKK---AVGKVVNG----APNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVV 339 (372)
Q Consensus 268 ~~~~~~eLS~G~r---~iAral~~----~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~is 339 (372)
..+.+.+||||++ +||++++. .|+ +++||| |++||+..+..+.. ++.++. +++++|+++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~--~llLDEp~a~LD~~~~~~~~~--------~l~~~~---~~~~~ivit 124 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAP--FYLFDEIDAHLDDANVKRVAD--------LIKESS---KESQFIVIT 124 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHHT---TTSEEEEEC
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCC--EEEECCCccCCCHHHHHHHHH--------HHHHhc---cCCEEEEEE
Confidence 3466789999999 89999974 468 999999 99999999988887 777764 346788999
Q ss_pred eccCC
Q 017380 340 DELGI 344 (372)
Q Consensus 340 H~~~~ 344 (372)
|+...
T Consensus 125 h~~~~ 129 (173)
T 3kta_B 125 LRDVM 129 (173)
T ss_dssp SCHHH
T ss_pred ecHHH
Confidence 98643
No 167
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.28 E-value=1.3e-07 Score=90.47 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=26.7
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE---eecccc
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM---AAGDTF 209 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l---~~~d~~ 209 (372)
+++.+|++++|+||||||||||++.|+|..++..|+|.+ .|.++.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccc
Confidence 566789999999999999999999999999999999988 454443
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=3.6e-07 Score=80.77 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=28.8
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA 199 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G 199 (372)
++.+|++++|+|||||||||+++.|++.+.|+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4678999999999999999999999999866433
No 169
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=3.4e-07 Score=87.14 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.2
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE---eeccccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM---AAGDTFR 210 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l---~~~d~~r 210 (372)
...|++++|+||||||||||++.|+ .+.|+.|+|.+ .|.++.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~ 207 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT 207 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee
Confidence 4468999999999999999999999 99999999998 6666543
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.24 E-value=5.9e-07 Score=78.11 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=33.4
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCe
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK 200 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~ 200 (372)
+++++++.+| +.+|+|||||||||++..|.+.+.+..|+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 4678888877 99999999999999999999988765543
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.24 E-value=4.3e-07 Score=80.07 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+||||||||++.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 172
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.21 E-value=3.4e-07 Score=80.07 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeecccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTF 209 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~ 209 (372)
++++|+|+|||||||+++.|+++++|+ .|.|.+++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 589999999999999999999999998 688998776643
No 173
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.19 E-value=3.2e-07 Score=93.69 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=55.4
Q ss_pred hhHhHH-HHHHH---HHHHHHhCCC--CceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeecc
Q 017380 270 SLMEEL-VACKK---AVGKVVNGAP--NEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDEL 342 (372)
Q Consensus 270 ~~~~eL-S~G~r---~iAral~~~P--~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~~ 342 (372)
+++.+| |||++ +||++++.+| + +||||| |+|+|+..+..+.. +|.++. . |.+||+|||++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~--~lilDEp~~gld~~~~~~i~~--------~l~~~~--~-~~~vi~itH~~ 458 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTP--SVVFDEVDAGIGGAAAIAVAE--------QLSRLA--D-TRQVLVVTHLA 458 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSS--EEEECSCSSSCCTHHHHHHHH--------HHHHHH--H-HSEEEEECCCH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCC--EEEEeCCcCCCCHHHHHHHHH--------HHHHHh--C-CCEEEEEecCH
Confidence 456778 99999 9999999999 8 999999 99999999988887 788875 3 78999999998
Q ss_pred CCc
Q 017380 343 GIP 345 (372)
Q Consensus 343 ~~p 345 (372)
.+.
T Consensus 459 ~~~ 461 (517)
T 4ad8_A 459 QIA 461 (517)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 174
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.18 E-value=7e-07 Score=78.08 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEE
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILM 203 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l 203 (372)
+|++++|+|||||||||++++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999864 4455544
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.15 E-value=1e-06 Score=80.22 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=34.6
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
...++|++++|+|+|||||||++++|+++ +|+|.+.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34568999999999999999999999998 78899876653
No 176
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.15 E-value=2.1e-06 Score=87.38 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=39.2
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHh--hhhhcCCeEEEeecccc
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY--RLKNEGAKILMAAGDTF 209 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag--~l~~~~G~V~l~~~d~~ 209 (372)
..+.+++.++..++|+|++||||||+++.|.. +++...+.|.+...|..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 46778888888999999999999999999876 44455677877777753
No 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=5.7e-07 Score=82.66 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=42.3
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
++.+.|+....++++++.+++| ++|+||||+||||+++.|++.+. .|.|.+.+.+
T Consensus 30 ~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~ 84 (254)
T 1ixz_A 30 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 84 (254)
T ss_dssp HHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred HHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence 4455555434456778888777 99999999999999999999875 6788886554
No 178
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=1.1e-06 Score=77.88 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=25.2
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
..++++||++.+|++++|+||+||||||+.+.|+..+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999999999999877
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.13 E-value=6.7e-07 Score=83.51 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=42.0
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
++.+.|+....++++++.+++| ++|+||||+||||+++.|++.+. .|.|.+.+.+
T Consensus 54 ~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~ 108 (278)
T 1iy2_A 54 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 108 (278)
T ss_dssp HHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred HHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence 3444454433456678888777 99999999999999999999875 6788886654
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.11 E-value=2.6e-05 Score=75.90 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=36.0
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|+++.|.||+|+|||||+..+++.+.+.+|+|.+.+.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46899999999999999999999999999888888665543
No 181
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.11 E-value=1.1e-06 Score=85.58 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=32.4
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCeEEEe
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK-NEGAKILMA 204 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~-~~~G~V~l~ 204 (372)
++++. .+|++++|+||||||||||++.|+|.+. +..|.|.+.
T Consensus 208 ~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 208 PLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp HHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred HHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 34443 3689999999999999999999999999 999999885
No 182
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=3.4e-07 Score=84.92 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHH-HHHh-ccCCCCCccceeccC---CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 147 KNSV-LDLL-TKKGNKTELQLGYRK---PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 147 ~~~l-~~~~-~~~~~~~~isl~i~~---g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+++ .+.| +....++++||++.+ |++++|+|++||||||+.+.|++.+
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred EcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3566 7777 555568899999999 9999999999999999999999966
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.06 E-value=3.1e-06 Score=82.09 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
++.+++|+|++|||||||++.|++.+.+++|+|.+.+.|....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 5789999999999999999999999999999999999887543
No 184
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.06 E-value=1.7e-06 Score=88.95 Aligned_cols=44 Identities=32% Similarity=0.449 Sum_probs=37.3
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEEeecccc
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILMAAGDTF 209 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l~~~d~~ 209 (372)
.+.+|++++|+|+|||||||+++.|++.+.+++| +|.+.++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3568999999999999999999999999999876 7864455543
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=2.5e-05 Score=75.39 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEee
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAA 205 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~ 205 (372)
.+.|.||+|+||||+++.+++.+.+. +..+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999998776 33444433
No 186
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.05 E-value=7.1e-07 Score=92.81 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=45.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC-CeEEEee
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG-AKILMAA 205 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~-G~V~l~~ 205 (372)
.+...|+....++.+++.+..|+.++|+||||+||||+++.|++++.+.. |.+.+.+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 44555665555667788888999999999999999999999999998765 6666644
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.04 E-value=3.9e-06 Score=72.39 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=31.4
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.+|++++|+|+|||||||+++.|++.+ |.+.+.+.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999986 6788855443
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.03 E-value=2.4e-06 Score=76.50 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=27.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999876
No 189
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.97 E-value=1.3e-06 Score=80.64 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.6
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHH---hhhhhcCCeEE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLA---YRLKNEGAKIL 202 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~La---g~l~~~~G~V~ 202 (372)
.+|++++|+|||||||||++++|+ |+..++.|.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 578999999999999999999999 88777777776
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.95 E-value=5.6e-06 Score=72.28 Aligned_cols=43 Identities=37% Similarity=0.479 Sum_probs=37.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
..+|.++.|+|++||||||+.+.|+..+.+.++.+.+...|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4578999999999999999999999999988888876665543
No 191
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.95 E-value=1.2e-07 Score=91.42 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh----hhcCCeEEE
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL----KNEGAKILM 203 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l----~~~~G~V~l 203 (372)
.+.++|+||||+||||+++.|++.+ .+.+|.+..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 3679999999999999999999998 444554443
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.94 E-value=2.1e-06 Score=90.24 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=30.7
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh--cCCeE
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN--EGAKI 201 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~--~~G~V 201 (372)
+++.++..++|+|++|+|||||++.|++...+ ..|+|
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 45678899999999999999999999988764 56777
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.93 E-value=4.5e-06 Score=74.60 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=26.6
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+...+|++++|+|||||||||+++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3345799999999999999999999999875
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=3.5e-05 Score=77.02 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhc--CCeEEE
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILM 203 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~--~G~V~l 203 (372)
+..+.|.||+|+||||+++.|++.+... +..+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3569999999999999999999987653 344443
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.89 E-value=3.6e-05 Score=77.73 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=25.4
Q ss_pred CccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 161 TELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 161 ~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++.+++| +.|+||+|+||||+++.+++..
T Consensus 42 ~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 42 NRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3445555555 8899999999999999999854
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.89 E-value=1.9e-05 Score=76.52 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch---hhhhHH----HHHHHhhCcceeEecccccc---H
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA---AASDQL----EIWAERTGCEIVVAEGEKAK---A 238 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~---~a~eql----~~~~~~~~v~~~~~~~~~~~---~ 238 (372)
...+++|+|+.|+||||++..|++.+...+.+|.+.+.|.... ++..+. .......++.+ ........ .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i-~~~~~~~~~~~~ 156 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYI-RPSPTSGTLGGV 156 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEE-ECCC--CCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeE-EECCCCccccch
Confidence 3568999999999999999999999988888999988885332 111111 11111112222 11111111 1
Q ss_pred HHHHHHHHHhhhhhchHHHHHHhhCCCccchhhHhHHHHHHHHHHHHHhCCCCceEEEEcCCCC
Q 017380 239 SSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTG 302 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~d~vl~dt~G~~~~~~~~~~eLS~G~r~iAral~~~P~~~lLvLDEtsg 302 (372)
.....+.+......+++.+++||+|+.+... .+....+-+++|+|.+.+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~---------------~~~~~aD~vl~V~d~~~~ 205 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSEV---------------AVANMVDTFVLLTLARTG 205 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHHH---------------HHHTTCSEEEEEEESSTT
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHHH---------------HHHHhCCEEEEEECCCCC
Confidence 1122233333334567788899999754211 112567777888887443
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.88 E-value=3.3e-06 Score=86.69 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 149 SVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 149 ~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
++.+.|+....+.++++++ +|.+++|+||||+||||+++.|++.+.+..+.|.+.
T Consensus 88 ~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 88 KVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 3444444333344566666 789999999999999999999999997766666553
No 198
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.86 E-value=1.4e-05 Score=78.01 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=51.2
Q ss_pred hhHhHHHHHHH---------HHHHHHhCC-CCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEee
Q 017380 270 SLMEELVACKK---------AVGKVVNGA-PNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSV 338 (372)
Q Consensus 270 ~~~~eLS~G~r---------~iAral~~~-P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~i 338 (372)
.++.+||+||+ ++|+++..+ |+ +|+||| ++|+|+..+..+.. .+.++. .+++||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~--~lllDEp~~~LD~~~~~~l~~--------~l~~~~---~~~~vi~~ 342 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVE--CIILDEPTVYLDENRRAKLAE--------IFRKVK---SIPQMIII 342 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCS--EEEEESTTTTCCHHHHHHHHH--------HHHHCC---SCSEEEEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCC--eEEEeCCCCcCCHHHHHHHHH--------HHHHhc---cCCeEEEE
Confidence 45678999999 246888889 99 999999 99999999988877 777764 24689999
Q ss_pred eeccCC
Q 017380 339 VDELGI 344 (372)
Q Consensus 339 sH~~~~ 344 (372)
||+..+
T Consensus 343 th~~~~ 348 (371)
T 3auy_A 343 THHREL 348 (371)
T ss_dssp ESCGGG
T ss_pred EChHHH
Confidence 999764
No 199
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.86 E-value=1.5e-05 Score=79.16 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=52.4
Q ss_pred hhHhHHHHHHH---HHHHHHh----CCCCceEEEEcC-CCCCCHHHHHHHHhhhcCchhhHhhhccccccceeeEeeeec
Q 017380 270 SLMEELVACKK---AVGKVVN----GAPNEILLVLDG-TTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDE 341 (372)
Q Consensus 270 ~~~~eLS~G~r---~iAral~----~~P~~~lLvLDE-tsglD~~~~~~~~~~~~~~tgiiltkld~t~~gg~vi~isH~ 341 (372)
..+..||+||+ +||++++ .+|+ +|+||| +++||+..+..+.. ++.++. ..+.++|++||+
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~--~lllDEp~~~LD~~~~~~l~~--------~l~~~~--~~~~~~ii~th~ 396 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSP--FFVLDEVDAALDITNVQRIAA--------YIRRHR--NPDLQFIVISLK 396 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCS--EEEESSTTTTCCHHHHHHHHH--------HHHHHC--BTTBEEEEECSC
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCC--EEEeCCCcccCCHHHHHHHHH--------HHHHHh--cCCCEEEEEECC
Confidence 44567999999 8999998 5788 999999 99999999988777 777764 347899999999
Q ss_pred cCC
Q 017380 342 LGI 344 (372)
Q Consensus 342 ~~~ 344 (372)
...
T Consensus 397 ~~~ 399 (430)
T 1w1w_A 397 NTM 399 (430)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=6.3e-06 Score=80.85 Aligned_cols=41 Identities=27% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
++++++.+++|++++|+||||+||||+++.|++.+ +|++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 34678889999999999999999999999999864 677765
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=1.7e-05 Score=68.76 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.6
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILM 203 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l 203 (372)
.+|.+++|+|++||||||+.+.|++.+.+.+- .|.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 36899999999999999999999999987443 3444
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.76 E-value=1.1e-05 Score=69.08 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.|.+++|+|||||||||+.+.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999875
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.75 E-value=2.8e-06 Score=82.50 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCccceeccCCeEEEEEcCCCCcHHHHHHHHHh--hhhhcCCeE
Q 017380 159 NKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY--RLKNEGAKI 201 (372)
Q Consensus 159 ~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag--~l~~~~G~V 201 (372)
++++++++++ .++|||++||||||+++.|.| ++++..|.+
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 4666777765 799999999999999999999 444444433
No 204
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.74 E-value=2.3e-05 Score=71.43 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=33.0
Q ss_pred CCccceecc---CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 160 KTELQLGYR---KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 160 ~~~isl~i~---~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+.+.++.+. +|.+++|.|++||||||++++|+..+.+ ++.|...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 344555444 8999999999999999999999999988 8888653
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.71 E-value=2.5e-05 Score=69.22 Aligned_cols=31 Identities=32% Similarity=0.287 Sum_probs=27.8
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
-.+.+|.+++|+|++||||||+.+.|++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999864
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.70 E-value=1.7e-05 Score=78.09 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=33.3
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHh------------hhhhcCCeEEEee
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAY------------RLKNEGAKILMAA 205 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag------------~l~~~~G~V~l~~ 205 (372)
.+.+|..++|||+||||||||++.|+| ...|+.|.|.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 356799999999999999999999999 4457777777743
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.69 E-value=1.6e-05 Score=70.93 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=33.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC--eEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA--KILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G--~V~l~~~d~ 208 (372)
+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+ +.|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~-~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL-DGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE-CHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE-CChH
Confidence 457899999999999999999999999986666 5555 4444
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.68 E-value=5.5e-05 Score=72.55 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=26.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
..+..+.|.||+|+||||+++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999988765
No 209
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.67 E-value=1.5e-05 Score=85.08 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=37.4
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhc---CCeEEEeeccccchhhhhHHHHHHHhhCc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE---GAKILMAAGDTFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~---~G~V~l~~~d~~r~~a~eql~~~~~~~~v 226 (372)
..|++++++||||+||||++..+.+..... ++.|.+. . ..|..+.++...++...+.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl-~-P~r~La~q~~~~l~~~~~~ 166 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT-Q-PRRVAAMSVAQRVAEEMDV 166 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE-E-SCHHHHHHHHHHHHHHTTC
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec-C-chHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999887665432 4446552 2 3455555444555555443
No 210
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.65 E-value=2.5e-05 Score=77.63 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=28.9
Q ss_pred eeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 017380 165 LGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG 198 (372)
Q Consensus 165 l~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~ 198 (372)
+++.+|++++|+||||+||||++..|++++.+.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5566789999999999999999999999887644
No 211
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.60 E-value=8.4e-05 Score=75.45 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=42.4
Q ss_pred HHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 150 VLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 150 l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+...|.......++++.+++| ++|+||||+||||+++.|++... .+.|.+.+.+.
T Consensus 46 lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 46 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp HHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred HHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 344455444567788888777 99999999999999999999874 56778866554
No 212
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.60 E-value=0.00015 Score=68.78 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+..+.|.||+|+||||+++.+++.+...+..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 45689999999999999999999887665555443
No 213
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.57 E-value=1.5e-05 Score=71.51 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.+++|+||+||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 214
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.56 E-value=9.8e-05 Score=69.52 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 139 GPDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
.+++..++.+.+...++... ....|.++.|+||+||||||+.+.|+..+. ++.+.+ ..|++|.
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~-------~~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I-s~D~~R~ 71 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKK-------AVESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI-DNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-------CCSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE-CTHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccc-------CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE-echHhHH
Confidence 45666677777666665421 234688999999999999999999987653 345666 5777653
No 215
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.51 E-value=8.2e-05 Score=64.99 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
-.+++|+|++||||||+++.|.+.+++.+.+|.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3589999999999999999999998877666655443
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.51 E-value=0.00014 Score=66.81 Aligned_cols=42 Identities=31% Similarity=0.590 Sum_probs=33.3
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
..+|.++.|+|++||||||+.+.|+..+. .+.+.+ +.|.+|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~-~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVII-DGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEE-CGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEE-ecHHHHH
Confidence 45788999999999999999999998774 234555 6677664
No 217
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.47 E-value=6.8e-05 Score=63.61 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=25.3
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+..+++. +.+.+|+||||+||||++..|...+
T Consensus 16 ~~~i~f~-~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFK-EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECC-SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcC-CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445554 4599999999999999999998654
No 218
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.47 E-value=0.0001 Score=64.13 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.+++|+|++||||||++..|+..++..+.+|.+...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4899999999999999999999998877777776544
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.44 E-value=4.6e-05 Score=67.39 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.+++|+|+|||||||+.+.|+++ |...+++.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH
Confidence 47999999999999999999983 5556644443
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.39 E-value=0.0011 Score=58.53 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
..+.|.||+|+||||+++.++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 479999999999999999999877643
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.39 E-value=0.00082 Score=64.81 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+.+|+++.|.|++|+||||++..++......++.|.+...+.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 568999999999999999999999988777888998877654
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00015 Score=63.92 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
+.+++|+|++||||||+.+.|++.+ |-+.+.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999999887 45556433
No 223
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=1.1e-05 Score=77.29 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.8
Q ss_pred cCCeE--EEEEcCCCCcHHHHHHHHHhhhhhcCCe
Q 017380 168 RKPAV--VLIVGVNGGGKTTSLGKLAYRLKNEGAK 200 (372)
Q Consensus 168 ~~g~v--i~lvGpNGsGKTTll~~Lag~l~~~~G~ 200 (372)
..|++ +.|.||+|+||||+++.+++.+.+.++.
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 34444 8999999999999999999998765544
No 224
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.00012 Score=63.73 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.2
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999886
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.30 E-value=0.00011 Score=65.08 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
..+|.+++|+||+||||||+.+.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35789999999999999999999998774
No 226
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.22 E-value=0.00016 Score=63.73 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag 192 (372)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.0012 Score=63.03 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=45.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhcc-CCCCCccc----eeccCCeEEEEEcCCCCcHH
Q 017380 110 LLVSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK-KGNKTELQ----LGYRKPAVVLIVGVNGGGKT 184 (372)
Q Consensus 110 L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~is----l~i~~g~vi~lvGpNGsGKT 184 (372)
+...|++...+.++++.+.+.+.. .+.+..++. +.... ... ......++ =.+++|+++.|.||+|+|||
T Consensus 48 ~~~~g~s~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~-~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT 121 (324)
T 2z43_A 48 SVAAGIPLSTAQKIIKEARDALDI-RFKTALEVK----KERMN-VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKT 121 (324)
T ss_dssp -------------------------CCCCHHHHH----HHHCS-CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred HHhhCCCHHHHHHHHHHHHhhccc-Cccchhhhh----hhhcc-CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHh
Confidence 344677777778887777655432 233433322 11000 000 00011111 13578999999999999999
Q ss_pred HHHHHHHhhhh-hc-----CCeEEEeecc-ccchhhhhHHHHHHHhhCc
Q 017380 185 TSLGKLAYRLK-NE-----GAKILMAAGD-TFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 185 Tll~~Lag~l~-~~-----~G~V~l~~~d-~~r~~a~eql~~~~~~~~v 226 (372)
|++..++.... +. ++.|.+.+.+ .++. +++..+....++
T Consensus 122 ~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~---~~l~~~~~~~g~ 167 (324)
T 2z43_A 122 QLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW---ERIENMAKALGL 167 (324)
T ss_dssp HHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH---HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHhCC
Confidence 99999987643 32 5566665544 3432 345555555554
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00027 Score=64.70 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
-+.|+||+|+||||+++.|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 389999999999999999999864
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.0031 Score=60.25 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
.+..+.|.||.|+||||+++.++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999988754
No 230
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.17 E-value=0.00011 Score=64.89 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+++|+|++||||||+++.|+..+...+.+|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 689999999999999999999998766666553
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.16 E-value=0.00024 Score=63.30 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=24.6
Q ss_pred cceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 163 LQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 163 isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
..+++. +.+.+|+||||+||||++..|...+
T Consensus 17 ~~i~f~-~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 17 TVVEFK-EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECC-SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEeC-CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 445554 4699999999999999999987544
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.11 E-value=0.0017 Score=60.55 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+...+.|+||+|+||||+++.|++.+.+.++.+...++.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 456899999999999999999999988776666554543
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.11 E-value=0.00041 Score=67.78 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~ 205 (372)
.+..++|+||+|+||||+++.|++.+.+.+++|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4567899999999999999999999888888888754
No 234
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.07 E-value=0.0003 Score=60.23 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999854
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.0003 Score=60.76 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999765
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.03 E-value=0.0062 Score=60.54 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=35.2
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l~~~d~ 208 (372)
+.+|+++.|.|++|+||||++..++..... .+..|.+.....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 678999999999999999999999987765 456788766653
No 237
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00016 Score=73.59 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 158 GNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 158 ~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
...+++++++.+| +.+|+|+||+||||++..|..+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3456788888888 9999999999999999999776
No 238
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.01 E-value=0.0003 Score=68.97 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=32.6
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
|+.+.+.+|+.++|+||+|+||||+++.|++....
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 68889999999999999999999999999998864
No 239
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.0024 Score=58.95 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++..+.|.||+|+||||+++.++..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 355679999999999999999998875
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.99 E-value=0.0026 Score=60.39 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=35.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+.+|+++.|.|++|+||||++..++......+..|.+...+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 568999999999999999999999876655567888877653
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.92 E-value=0.00053 Score=62.10 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=24.8
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999999865
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00049 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
No 243
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.91 E-value=0.00098 Score=59.27 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
.+..+.|.||+|+||||+++.++..+...+..+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 45689999999999999999999988766666665444
No 244
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0014 Score=62.17 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 245
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.91 E-value=0.00064 Score=62.68 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
++.++.|+|++||||||+.+.|+..+...+-.+.+.+.|.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46789999999999999999999887655545553355543
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.90 E-value=0.00045 Score=58.49 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|++|+||||+++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 247
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.88 E-value=0.00039 Score=65.75 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
++.+++|+|++|||||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4558999999999999999999986
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.86 E-value=0.0017 Score=62.51 Aligned_cols=57 Identities=28% Similarity=0.299 Sum_probs=39.6
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhh-hh-----cCCeEEEeecc-ccchhhhhHHHHHHHhhCc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRL-KN-----EGAKILMAAGD-TFRAAASDQLEIWAERTGC 226 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l-~~-----~~G~V~l~~~d-~~r~~a~eql~~~~~~~~v 226 (372)
+++|+++.|.||+|+||||++..++... .| .++.|.+.+.+ .++. +++..+....++
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~---~~l~~~~~~~g~ 182 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP---DRLRDIADRFNV 182 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH---HHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHcCC
Confidence 6789999999999999999999999863 22 35666665543 3332 345555555544
No 249
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.00069 Score=58.64 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=24.3
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999766
No 250
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.00096 Score=58.46 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
..+.|.||+|+||||+++.|+..+...+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6789999999999999999999887766666653
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00082 Score=61.40 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
.+-+++|.||+||||||+.+.|+..+ |-..+..++.+|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l----g~~~~d~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL----GARYLDTGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----CCCcccCCcHHHH
Confidence 35689999999999999999999776 2345555555543
No 252
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.83 E-value=0.0014 Score=61.89 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=36.7
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 169 KPAVVLIVGV-NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 169 ~g~vi~lvGp-NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++.+++|.|+ .|+||||+...||..+...+.+|++++.|..+
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 4679999997 58999999999999998888899999998743
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.00071 Score=57.92 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 254
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00069 Score=58.39 Aligned_cols=28 Identities=39% Similarity=0.456 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNE 197 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~ 197 (372)
|.+++|.|+.||||||+.+.|+..+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999877643
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.81 E-value=0.01 Score=56.20 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=47.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHhcc-CCCCCccc--e--eccCCeEEEEEcCCCCcHHHH
Q 017380 112 VSDFGPRITIKIVESLRDDILAGKLKSGPDIKDALKNSVLDLLTK-KGNKTELQ--L--GYRKPAVVLIVGVNGGGKTTS 186 (372)
Q Consensus 112 ~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~is--l--~i~~g~vi~lvGpNGsGKTTl 186 (372)
..+++.+.+.++++..++.+.. .+.+..++.+ .... ... ......++ + -+++|+++.|.|++|+||||+
T Consensus 41 ~~gis~~~a~~~i~~a~~~~~~-~~~~~~~~~~----~~~~-~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 41 IEGISEKAAAKMIMGARDLCDL-GFKSGIDLLK----QRST-VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp STTCCHHHHHHHHHHHHHHTTC-SCCCTHHHHH----HHTT-CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHH
T ss_pred hhCcCHHHHHHHHHHHHHhhhh-cCCcHHHHHH----Hhcc-CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 4689999999999988776533 3444443321 1100 000 00111111 1 356899999999999999999
Q ss_pred HHHHHhh
Q 017380 187 LGKLAYR 193 (372)
Q Consensus 187 l~~Lag~ 193 (372)
+..++..
T Consensus 115 a~~la~~ 121 (322)
T 2i1q_A 115 MHQSCVN 121 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 256
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.79 E-value=0.00042 Score=69.33 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|.+|||||||++.|.|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999873
No 257
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.0011 Score=58.13 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
+|.+++|.|+.||||||+.+.|+..+...+ .+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 467999999999999999999999876544 5543
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00062 Score=59.42 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
++.+++|+|++||||||+.+.|+.. |-..++..+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 4678999999999999999999985 5556644333
No 259
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.76 E-value=0.00035 Score=67.72 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.4
Q ss_pred eccCCeE--EEEEcCCCCcHHHHHHHHHhhhh
Q 017380 166 GYRKPAV--VLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 166 ~i~~g~v--i~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.+++|++ ++|+|++|+||||+.+.|++.+.
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445655 99999999999999999999875
No 260
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.76 E-value=0.0007 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|++|||||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.72 E-value=0.0012 Score=56.82 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
++.|.|+.||||||+.+.|+..+...+-.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 689999999999999999999887544445443
No 262
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.69 E-value=0.00089 Score=61.57 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+++|+|||||||||+.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999865
No 263
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.69 E-value=0.00092 Score=58.06 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
++++++..++. .++++|++||||||+++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 45667766554 689999999999999999987
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.69 E-value=0.0007 Score=58.36 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 265
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.69 E-value=0.0018 Score=58.98 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=35.5
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.+.-++.++|..||||||++..|+..+. .+.+|.+.+.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3567899999999999999999999988 888999988775
No 266
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.00092 Score=58.22 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998763
No 267
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.67 E-value=0.0023 Score=56.58 Aligned_cols=40 Identities=35% Similarity=0.429 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
..+++|+|+.||||||+++.|++.+... .++.+...|...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 3579999999999999999999886544 577776777643
No 268
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.001 Score=56.72 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
+.++.|+|++||||||+.+.|+.. .-|-+.+ ..|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i-~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK---NPGFYNI-NRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---STTEEEE-CHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh---cCCcEEe-cHHHHH
Confidence 358999999999999999999872 2244455 445443
No 269
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.00097 Score=57.39 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++.++.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998665
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.62 E-value=0.002 Score=56.40 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+|.++.+.||.|+||||++..++..+...+.+|.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999987877776667777774
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.61 E-value=0.0012 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.61 E-value=0.0019 Score=56.82 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=28.5
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKI 201 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V 201 (372)
.+|.+++|+|+.||||||+.+.|+..+...+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4688999999999999999999998876544444
No 273
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.60 E-value=0.0011 Score=65.97 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.-.++|+|+||||||||++.|+|...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcc
Confidence 35799999999999999999999853
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.0013 Score=59.49 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=35.3
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA 212 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~ 212 (372)
...++.++.|+||.||||+|..+.|+..| |-+.|..+|.+|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR~~ 67 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLRAE 67 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHHHH
Confidence 35678899999999999999999999876 45667777887753
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.0013 Score=57.05 Aligned_cols=27 Identities=30% Similarity=0.568 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999999766
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.0019 Score=58.35 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.|+.++++|||||||||++..+...
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 5789999999999999988877644
No 277
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.59 E-value=0.0009 Score=62.98 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
++-+++|.||+||||||+.+.|+..+...+-++.+...|.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 45689999999999999999999877654445655565543
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.00099 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0013 Score=56.64 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.57 E-value=0.0014 Score=58.25 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
.+.+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 281
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.56 E-value=0.0019 Score=55.93 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
+++|.|+.||||||+.+.|+..+...+-.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 68999999999999999999988766555544
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0014 Score=57.27 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 283
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.0012 Score=62.25 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.6
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+.++..+.|.||+|+||||+++.|++.+. .+-+.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 45678899999999999999999999763 3344443
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.55 E-value=0.0012 Score=55.69 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017380 172 VVLIVGVNGGGKTTSLGKL 190 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~L 190 (372)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999988
No 285
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.54 E-value=0.001 Score=64.79 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999999765
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.52 E-value=0.0012 Score=58.15 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l 194 (372)
+.|+||+||||||+++.|...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987654
No 287
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.49 E-value=0.00095 Score=65.67 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+..+..++|||+||+|||||++.|++.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 446778999999999999999999987
No 288
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.013 Score=55.95 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
+|..+.|.||.|+|||++++.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998864
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.49 E-value=0.013 Score=58.29 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+.+|+++.|.|++|+||||++-.++......+..|.+...+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 678999999999999999999999887765677888876653
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.48 E-value=0.0025 Score=55.95 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=27.9
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKI 201 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V 201 (372)
.+|.+++|.|+.||||||+.+.|+..+...+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3678999999999999999999998776443334
No 291
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.0013 Score=70.65 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 143 KDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 143 ~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
...+.+.+...+....... ++.+.+|+.++|+||||+||||+++.|++.+..
T Consensus 213 ~~~l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 213 LAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGHHHHHHHHHHHCGGGGT--SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhCHHHHH--hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 3444555544333222222 355678999999999999999999999998743
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.44 E-value=0.00096 Score=57.98 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
..+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 293
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.44 E-value=0.0013 Score=63.94 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=24.4
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
+..+++.+ .+.+|+|+||+||||++-.|.-
T Consensus 18 ~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 34555544 6999999999999999999874
No 294
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.43 E-value=0.00075 Score=59.11 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=24.2
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
++++..++. .++++|++||||||+++.+.+
T Consensus 18 ~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 18 FLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455555554 579999999999999999976
No 295
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.42 E-value=0.0029 Score=56.74 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
+|.++.|.|+.||||||.++.|+..+...+-+|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 688999999999999999999999998776677553
No 296
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.39 E-value=0.003 Score=61.29 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=34.7
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|.++.|.|++|+||||+...++......+++|.+.+.+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56899999999999999999999998877777777776653
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.36 E-value=0.0024 Score=54.89 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 298
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0018 Score=58.49 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEG 198 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~ 198 (372)
-.++|+|++|+|||||++.|.|......
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 3689999999999999999998655443
No 299
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.34 E-value=0.0014 Score=56.20 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=18.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998665
No 300
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.31 E-value=0.0024 Score=56.87 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
+|.+++|+|+.||||||+.+.|+..+. -..+...|..|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~----~~~i~~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH----AAHLATGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC----CEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC----ceEEehhHHHH
Confidence 567899999999999999999998762 34454444444
No 301
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.31 E-value=0.0031 Score=54.37 Aligned_cols=31 Identities=35% Similarity=0.497 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEE
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKIL 202 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~ 202 (372)
+++|.|+.||||||+.+.|+..+...+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999998865444443
No 302
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.30 E-value=0.0035 Score=56.30 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCC-eEEE
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGA-KILM 203 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G-~V~l 203 (372)
+|.+|.|-|+.||||||.++.|+..+...+- .|.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 4789999999999999999999999987664 5544
No 303
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.28 E-value=0.0043 Score=57.64 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++..+.|.||+|+||||+++.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.27 E-value=0.0027 Score=55.53 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-..+.+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456799999999999999999998765
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.27 E-value=0.012 Score=68.42 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=35.1
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+++|+++.|.||.|+||||+...++.-....++++.+...+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 66899999999999999999999988766678888886644
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.26 E-value=0.0025 Score=58.07 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
++-+++|.||.||||||+.+.|+..+ |-..+...++.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~----g~~~is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH----CYCHLSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEecHHHHHH
Confidence 57789999999999999999998765 4455655555443
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.25 E-value=0.0025 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.23 E-value=0.0044 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
..-+++|.|+.||||||+.+.|+..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 309
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.23 E-value=0.0025 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999765
No 310
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.20 E-value=0.0051 Score=52.08 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
+..+.|.||.|+||||+++.++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999988754
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0024 Score=56.92 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.+.++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998763
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.20 E-value=0.003 Score=55.27 Aligned_cols=26 Identities=42% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.|.+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999866
No 313
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.19 E-value=0.0043 Score=56.64 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCe-EEE
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAK-ILM 203 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~-V~l 203 (372)
+|.++.|.|+.||||||.++.|+..+...+-+ +.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~ 61 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR 61 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeee
Confidence 58899999999999999999999999876655 444
No 314
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0024 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
-.++|+|++|||||||++.|+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999998743
No 315
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.17 E-value=0.019 Score=65.73 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=36.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+.+|+++.|.||+|+||||++..++......+++|.+...+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 679999999999999999999999998887888888866543
No 316
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.16 E-value=0.00073 Score=65.59 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~ 195 (372)
++|+|++|+|||||++.|.+...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 59999999999999999987643
No 317
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.14 E-value=0.0032 Score=57.18 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=28.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhc----CCeEEE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNE----GAKILM 203 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~----~G~V~l 203 (372)
.+|.+|.|.|+.||||||.++.|+..+... +-+|.+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~ 62 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV 62 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee
Confidence 478899999999999999999999998765 667655
No 318
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.13 E-value=0.0053 Score=54.41 Aligned_cols=38 Identities=37% Similarity=0.457 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
-+++|+|..||||||++..++...... .++...+.|..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 578999999999999999999876544 45666566653
No 319
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.12 E-value=0.0032 Score=56.21 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAA 212 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~ 212 (372)
++.|+||.||||+|..+.|+..+ |-+.|..+|.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHHHH
Confidence 57899999999999999999876 45677778888754
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.08 E-value=0.0048 Score=59.43 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.+++|+||+||||||+...|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0033 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.-.++|+|+.||||||+++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 322
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.05 E-value=0.0059 Score=60.87 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
.-+.|+||+|+||||+.+.||+.+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34899999999999999999998753
No 323
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.04 E-value=0.0032 Score=56.41 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
+++|.|+.||||||+.+.|+..+ |-..+...|..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l----g~~~i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY----SLAHIESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH----TCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCeEEchHHHHH
Confidence 58999999999999999999876 234554444444
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.95 E-value=0.0043 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++|+.|+||||+++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.94 E-value=0.0039 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++|+.|+||||+++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.94 E-value=0.0039 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.93 E-value=0.0035 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998865
No 328
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.92 E-value=0.0036 Score=53.04 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999865
No 329
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.92 E-value=0.0065 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
+..+.|.||.|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999999988754
No 330
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.91 E-value=0.0065 Score=62.60 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccch
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRA 211 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~ 211 (372)
.+.++.|.|++|+||||+++.|+..+...+.+|.+. ..+.++
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~-ApT~~A 244 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC-APTGKA 244 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE-ESSHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe-cCcHHH
Confidence 367999999999999999999999988888888884 455443
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.91 E-value=0.0044 Score=54.73 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
.++|+||.||||||+.+.|+..+ |-..+...++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----~~~~i~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY----EIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCcEeeHHHHHH
Confidence 48899999999999999998765 334454445544
No 332
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.90 E-value=0.0071 Score=58.84 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=35.3
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+++|.++.|.|+.|+||||+...++......++.|.+.+.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468999999999999999999988887766677888876653
No 333
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.89 E-value=0.024 Score=57.12 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.9
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE-GAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~-~G~V~l~~~d~ 208 (372)
+.+|+++.|.|++|+||||++..++...... +..|.+...+.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 6789999999999999999998888766554 66888877654
No 334
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.88 E-value=0.0052 Score=51.77 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+.-.++|+|+.||||||+++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999874
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.88 E-value=0.0048 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 336
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.86 E-value=0.0091 Score=54.04 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=31.4
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCeEEE
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGAKILM 203 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G~V~l 203 (372)
.+|.+|.|.|+.||||||.++.|+..+.. .+-+|.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 46899999999999999999999999987 6656655
No 337
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.86 E-value=0.0087 Score=56.91 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=37.5
Q ss_pred ceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 164 QLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 164 sl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+..+..-+||+|.|-=|+||||+..-||.-+...|.+|.+.+.|.
T Consensus 42 ~~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 42 ADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccCCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 344666789999999999999999999999998999999999995
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.85 E-value=0.0051 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-++++|.|+.||||||..+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 339
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.84 E-value=0.0046 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.83 E-value=0.0047 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++|+.|+||||+++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 341
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.82 E-value=0.0047 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 342
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.82 E-value=0.0097 Score=52.47 Aligned_cols=38 Identities=29% Similarity=0.184 Sum_probs=33.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~ 205 (372)
.+|.++.+.||-|+||||.+-.++..+.-.+.+|.+..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46899999999999999999999998887788888864
No 343
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.012 Score=56.69 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++..+.|.||.|+||||+++.|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999875
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.81 E-value=0.005 Score=54.45 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
.++|+||.||||||+.+.|+..+ |-..+...++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY----GIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS----SCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCcEEeHHHHHH
Confidence 48899999999999999998765 344554445544
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0046 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.81 E-value=0.0047 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 347
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.79 E-value=0.0044 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 348
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.79 E-value=0.0055 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++.++.|+||+||||||+...||..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999876
No 349
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.77 E-value=0.006 Score=61.18 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=30.5
Q ss_pred eccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 166 GYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 166 ~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
.+.+|+.++|+|++|+|||||++.|+.......+.|.+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45579999999999999999999999887754444433
No 350
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.77 E-value=0.0038 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998654
No 351
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.77 E-value=0.0051 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 352
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.76 E-value=0.0052 Score=51.09 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++++|+.|+||||+++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 353
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.75 E-value=0.01 Score=55.56 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=37.3
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
.++.+++|.|.-|+||||+...||..+...+.+|.+.+.|..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 367899999999999999999999999888889999998863
No 354
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.74 E-value=0.0052 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 355
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.72 E-value=0.01 Score=53.61 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=32.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
.+|.++.+.|+.|+||||++-.++..+...+.+|.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3689999999999999999999988887777788876
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.72 E-value=0.005 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48999999999999999997643
No 357
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.72 E-value=0.0054 Score=51.63 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 358
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.017 Score=51.66 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=32.5
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhh-hhhcCCeEEEeeccc
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYR-LKNEGAKILMAAGDT 208 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~-l~~~~G~V~l~~~d~ 208 (372)
+++|+++.|.|++|+||||++-.++.. ....++.|.+...+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 578999999999999999998877643 344566787766553
No 359
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.70 E-value=0.019 Score=51.87 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
..+.-+.|.||.|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999999865
No 360
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.70 E-value=0.0054 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.70 E-value=0.0057 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 362
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.70 E-value=0.0052 Score=52.64 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|++||||||+++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.70 E-value=0.006 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+|-.++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 364
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.69 E-value=0.0055 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.||||||+++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999998764
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.69 E-value=0.0055 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+||||+++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 366
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.67 E-value=0.0059 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 367
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.65 E-value=0.011 Score=55.99 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCeEEEe
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLK-NEGAKILMA 204 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~-~~~G~V~l~ 204 (372)
+..+.|.||.|+|||+++..|+..+. ..+.+|.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 56799999999999999999999887 666666653
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.63 E-value=0.011 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
...+++|+|+.||||||..+.|+..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998764
No 369
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.62 E-value=0.0056 Score=56.94 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|++||||||+++.|+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999985
No 370
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.61 E-value=0.015 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++..+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568999999999999999999877
No 371
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.61 E-value=0.0054 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999998753
No 372
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.60 E-value=0.0063 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 373
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.59 E-value=0.0064 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 374
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.59 E-value=0.0076 Score=57.42 Aligned_cols=25 Identities=44% Similarity=0.442 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.+++|+||+||||||+...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999998765
No 375
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.59 E-value=0.0049 Score=51.89 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 376
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.57 E-value=0.0066 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.56 E-value=0.0067 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.56 E-value=0.0068 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
.++|+|+.|+|||||++.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999887654
No 379
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0046 Score=52.44 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
+.-.++|+|++||||||+++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998873
No 380
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.55 E-value=0.0083 Score=53.94 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.54 E-value=0.007 Score=50.23 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 382
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.53 E-value=0.0092 Score=49.75 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+.-.++++|+.|+||||+++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999763
No 383
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.53 E-value=0.0069 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999999863
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.52 E-value=0.0078 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
.+.+|+|+|+.||||||+.+.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 385
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.51 E-value=0.012 Score=52.34 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEe
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMA 204 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~ 204 (372)
|.+|+|=|+-||||||.++.|+..+. .+..|.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 57899999999999999999999886 35567663
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.51 E-value=0.0075 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 387
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.0078 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++++|+.||||||+++.+++-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 388
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.51 E-value=0.0073 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 389
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.50 E-value=0.0073 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+||||+++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.49 E-value=0.0078 Score=53.26 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
.++|.|+.||||||+.+.|+..+ |-..+...|..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~----g~~~i~~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY----GIPQISTGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH----CCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCeEEeHHHHHH
Confidence 47999999999999999999866 333444444443
No 391
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.49 E-value=0.0074 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 392
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.47 E-value=0.0083 Score=53.46 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=26.1
Q ss_pred CCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 160 KTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 160 ~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+...-+.+ .|..++|+||+|+||||+...|+...
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 33333444 58899999999999999999888653
No 393
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.45 E-value=0.0083 Score=57.33 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.+++|+||+||||||+...|+..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999865
No 394
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.45 E-value=0.0076 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|||||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999877654
No 395
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.45 E-value=0.0093 Score=58.85 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=28.2
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
.++.++.|+|++||||||+.+.|+..+ |-+.+ ..|.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i-~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHV-NRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEEC-CGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEE-ccchH
Confidence 457899999999999999999998754 33444 44544
No 396
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0078 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+-.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998743
No 397
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.006 Score=63.31 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|..|+|||||++.|.+.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHh
Confidence 447999999999999999999864
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.45 E-value=0.025 Score=57.36 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=32.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCC-eEEEeeccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKN-EGA-KILMAAGDT 208 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~-~~G-~V~l~~~d~ 208 (372)
+.|.++.|+|++||||||+-+.|+..+.. .+| .+.+.++|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46789999999999999999999999875 543 445556665
No 399
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.43 E-value=0.014 Score=53.16 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
.+++|.|..|+||||+...||..+...|.+|.+.+.|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 4677889999999999999999998888899998888643
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.43 E-value=0.0083 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 401
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.019 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++.-+.|.||.|+||||+++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355679999999999999999999876
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.42 E-value=0.0078 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 403
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0058 Score=60.68 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 140 PDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+.+++.+++.+..-+....... .+.+.++.=+.|.||.|+|||++.+.+|+.+.
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~--~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYE--QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455556555543332211111 12234555699999999999999999999764
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.41 E-value=0.008 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998653
No 405
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.045 Score=52.24 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
.+..+.|.||.|+||||+++.++..+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999988754
No 406
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.39 E-value=0.0099 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.+.+++|+||+||||||+...|+..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998765
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.38 E-value=0.0084 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 408
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.38 E-value=0.0083 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|||||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 409
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.36 E-value=0.0081 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 410
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.01 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998774
No 411
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.34 E-value=0.0087 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998753
No 412
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.34 E-value=0.013 Score=48.66 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEE
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILM 203 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l 203 (372)
.-+.|.||+|+|||++.+.|+......++.+.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~ 57 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVY 57 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEEE
Confidence 348999999999999999998876554444334
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.33 E-value=0.023 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+++..+.|.||.|+|||++.+.||..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999999877
No 414
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.32 E-value=0.0088 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 415
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.31 E-value=0.0091 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 416
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0089 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 417
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.30 E-value=0.009 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.30 E-value=0.011 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 419
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0091 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46999999999999999999873
No 420
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.28 E-value=0.011 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag 192 (372)
+-.++|||.+|+|||||++.|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999998
No 421
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.28 E-value=0.01 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+||||+++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 422
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.27 E-value=0.021 Score=51.72 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCeE-EEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 169 KPAV-VLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 169 ~g~v-i~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
.|+. +.+.|+.|+||||++-.++..+...|.+|.+...|+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4554 778889999999999999988887777898877776
No 423
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.27 E-value=0.013 Score=59.59 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=30.7
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
..+.+|.++|.+||||||+.++|+..+...+-...+...|.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 356799999999999999999999887644433433344433
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.27 E-value=0.011 Score=53.22 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
+|.++.|-|+.||||||.++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6889999999999999999999998865
No 425
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.007 Score=60.19 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 141 DIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+++..+++.+..-+....... .+.++++.=+.|.||.|+|||++.+.+|+...
T Consensus 188 ~~k~~l~e~v~~pl~~pe~f~--~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 188 KQIEELVEAIVLPMKRADKFK--DMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HHHHHHHHHTHHHHHCSHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 455555555443332211111 12344556699999999999999999999764
No 426
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.26 E-value=0.0097 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++++|+.|+||||+++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 427
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.0088 Score=52.31 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=23.4
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
++.|.-...-.++|+|+.|+||||+++.+.+-
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 33333333347999999999999999999874
No 428
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.25 E-value=0.0094 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|||||||++.|.|.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 429
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.25 E-value=0.0048 Score=66.09 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=32.8
Q ss_pred cceeccCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 163 LQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 163 isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
.++.+.++..++|+||+|+||||+++.|++.+.. .-+.+.+.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~ 546 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPE 546 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechH
Confidence 3556678889999999999999999999998743 234444333
No 430
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.24 E-value=0.0098 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+||||+++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 431
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.22 E-value=0.0068 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|++|||||||++.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999753
No 432
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.20 E-value=0.017 Score=54.86 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHh
Q 017380 142 IKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 142 ~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag 192 (372)
....+..-|...+.....+++..+.+ .|.-++|+|++|+||||+...|..
T Consensus 117 ~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 117 LMSRLTTFLEHELARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp HHHHHHHHHHHHTCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34445555666665544456666666 688899999999999999988876
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.01 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.16 E-value=0.012 Score=49.88 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag 192 (372)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 435
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.16 E-value=0.01 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|..||||||+++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998863
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.15 E-value=0.011 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.-.++|+|+.|+||||+++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3469999999999999999998754
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.15 E-value=0.011 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 438
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.14 E-value=0.014 Score=54.23 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKN 196 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~ 196 (372)
++..+.|.||.|+||||+++.++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999988754
No 439
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.14 E-value=0.011 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 440
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.0079 Score=59.88 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.8
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+.++.=+.|.||.|+|||++.+.||+.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44556699999999999999999999764
No 441
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.12 E-value=0.012 Score=50.05 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.-.++++|+.|+||||+++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998743
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.011 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 443
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.11 E-value=0.011 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 444
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.011 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 445
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.10 E-value=0.011 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.|+|||||++.+.+--
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 446
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.09 E-value=0.056 Score=52.27 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=37.2
Q ss_pred eeccCCeEEEEEc-CCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 165 LGYRKPAVVLIVG-VNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 165 l~i~~g~vi~lvG-pNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
..-.++.+++|+| ..|+||||+...||..+...+.+|.+.+.|
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3445789999997 788999999999999998778899998988
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.07 E-value=0.012 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.07 E-value=0.012 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+||||+++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 449
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.06 E-value=0.02 Score=54.69 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=28.9
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhhhc--CCeEEEeec
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLKNE--GAKILMAAG 206 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~~~--~G~V~l~~~ 206 (372)
+.+| ++.|.||.|+||||++-.++.-.... +|++.+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4578 89999999999999976666554443 667766554
No 450
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 451
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.05 E-value=0.54 Score=48.13 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred ccceeccCCeEEEEEcCCCCcHHHHHHHHHh-hh---hhcCCeEEE
Q 017380 162 ELQLGYRKPAVVLIVGVNGGGKTTSLGKLAY-RL---KNEGAKILM 203 (372)
Q Consensus 162 ~isl~i~~g~vi~lvGpNGsGKTTll~~Lag-~l---~~~~G~V~l 203 (372)
.+.+++.+.-.++|.|.+|||||++++.|.. ++ .|+.-++.+
T Consensus 206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 206 PIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4556666666799999999999999998655 33 244444544
No 452
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.04 E-value=0.022 Score=54.37 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGD 207 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d 207 (372)
+|..+.|.||.|+||||+++.++..+.....-+.+.+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 467899999999999999999999886443445554433
No 453
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.04 E-value=0.015 Score=60.34 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeeccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDT 208 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~ 208 (372)
+|.+|.|+|+.||||||+.+.|+..+...+-.+...+.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 5789999999999999999999998865443443334443
No 454
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.02 E-value=0.016 Score=59.41 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeecccc
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTF 209 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~ 209 (372)
.|.++.|+|+.||||||+.+.|+..+...+..+.+...|..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 47899999999999999999999987766666766666653
No 455
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.01 E-value=0.011 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 456
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.00 E-value=0.037 Score=48.76 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEee
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAA 205 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~ 205 (372)
.|+|=|+-||||||.++.|+..+...+-+|.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4778899999999999999999988777777643
No 457
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.00 E-value=0.01 Score=55.97 Aligned_cols=25 Identities=40% Similarity=0.361 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+...++|+|..|||||||++.|.|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999999875
No 458
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.99 E-value=0.011 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+||||+++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.012 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.013 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.98 E-value=0.0089 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.6
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
.++.+|+|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998774
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.014 Score=57.35 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
..+++|+||+||||||+...|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 45899999999999999999997663
No 463
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.97 E-value=0.029 Score=51.95 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=36.8
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 169 KPAVVLIVGV-NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 169 ~g~vi~lvGp-NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++.+++|.|+ .|+||||+...||..+...+.+|.+++.|..+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4679999986 68999999999999998888899999999754
No 464
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.96 E-value=0.01 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 465
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.95 E-value=0.013 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.||||||+++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36999999999999999998864
No 466
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.95 E-value=0.012 Score=50.09 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 447999999999999999999864
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.017 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.94 E-value=0.013 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|+.||||||+++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999843
No 469
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.017 Score=49.39 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAY 192 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag 192 (372)
.-.++|+|+.||||||+++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999985
No 470
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.92 E-value=0.013 Score=52.26 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.-.++|+|+.|+||||+++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 471
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.91 E-value=0.0094 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.-.++|+|+.|+||||+++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4469999999999999999998765
No 472
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.91 E-value=0.015 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.90 E-value=0.012 Score=50.92 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
-.++|+|..||||||+++.+.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4699999999999999998887543
No 474
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.90 E-value=0.0074 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 170 PAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 170 g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.-.++|+|+.|+|||||++.|.+.-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
No 475
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.89 E-value=0.014 Score=55.09 Aligned_cols=22 Identities=41% Similarity=0.373 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 476
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.013 Score=58.12 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhccCCCCCccceeccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 140 PDIKDALKNSVLDLLTKKGNKTELQLGYRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~~~~~isl~i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+++++.+++.+..-+........ +.+.++.=+.|.||.|+|||++.+.+|+...
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~--~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEE--MGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHH--HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCHHHHHh--CCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 44566666665543322111111 2234455699999999999999999999764
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.82 E-value=0.029 Score=52.97 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
++.-+.|.||.|+|||++++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999875
No 478
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.82 E-value=0.018 Score=51.60 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+...+.|.||.|+||||+...|+..+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999999987
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.81 E-value=0.0066 Score=55.47 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l 194 (372)
+.|.||+|+||||+++.|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8899999999999999999865
No 480
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.81 E-value=0.013 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
+.-.++|+|+.|||||||++.+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998743
No 481
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.79 E-value=0.013 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
-.++|+|+.|+||||+++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.011 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
++.=+.|.||.|+|||++.+.+|+...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 444489999999999999999999764
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.78 E-value=0.014 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 017380 169 KPAVVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 169 ~g~vi~lvGpNGsGKTTll~~Lag~ 193 (372)
+.-.++|+|+.|+||||+++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 484
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.78 E-value=0.011 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998754
No 485
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.77 E-value=0.014 Score=56.78 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|||++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999864
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.76 E-value=0.019 Score=59.04 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=32.0
Q ss_pred cCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC-CeEEEeecccc
Q 017380 168 RKPAVVLIVGVNGGGKTTSLGKLAYRLKNEG-AKILMAAGDTF 209 (372)
Q Consensus 168 ~~g~vi~lvGpNGsGKTTll~~Lag~l~~~~-G~V~l~~~d~~ 209 (372)
+.|.++.|.|++||||||+.+.|+..+...| ..+.+...|..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3577999999999999999999999887554 34444455543
No 487
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.75 E-value=0.034 Score=49.68 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHhhhhhc-CCeEEEeecccc
Q 017380 169 KPAVVLIVGV-NGGGKTTSLGKLAYRLKNE-GAKILMAAGDTF 209 (372)
Q Consensus 169 ~g~vi~lvGp-NGsGKTTll~~Lag~l~~~-~G~V~l~~~d~~ 209 (372)
.+.++++.++ -|+||||+...||..+... +.+|.+.+.|..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 5688999975 6899999999999999887 889999998865
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.74 E-value=0.027 Score=51.37 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhhcCCeEEEeec
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAG 206 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~~~~G~V~l~~~ 206 (372)
.-+.|.||+|+|||++++.|+......++.+....+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 458899999999999999999887654444443343
No 489
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.73 E-value=0.017 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 017380 173 VLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 173 i~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+.|.||.|+||||+++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998764
No 490
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.0086 Score=59.89 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=24.9
Q ss_pred ccCCeEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 167 YRKPAVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 167 i~~g~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
+.++.=+.|.||.|+|||++.+.||+.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 34566699999999999999999999764
No 491
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.72 E-value=0.038 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|..||||||+++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.016 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.69 E-value=0.029 Score=51.18 Aligned_cols=43 Identities=35% Similarity=0.400 Sum_probs=35.7
Q ss_pred ccCCeEEEEEc-CCCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 167 YRKPAVVLIVG-VNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 167 i~~g~vi~lvG-pNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
-+++.+++|.+ .-|+||||+...||..+. .+.+|.+.+.|...
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 34678999987 567999999999999999 88899999998754
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.69 E-value=0.016 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l 194 (372)
-.++|+|..|||||||++.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 495
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.69 E-value=0.015 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.68 E-value=0.017 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYR 193 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~ 193 (372)
.++|+|+.|+||||+++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 497
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.68 E-value=0.016 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 017380 172 VVLIVGVNGGGKTTSLGKLAYRL 194 (372)
Q Consensus 172 vi~lvGpNGsGKTTll~~Lag~l 194 (372)
.++|+|..||||||+++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 498
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.67 E-value=0.03 Score=48.52 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=51.7
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHhhhhhcCCeEEEeeccccchhhhhHHHHHHHh--hCcceeEeccccccHHHHHHHHHH
Q 017380 171 AVVLIVG-VNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAER--TGCEIVVAEGEKAKASSVLSQAVK 247 (372)
Q Consensus 171 ~vi~lvG-pNGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r~~a~eql~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~ 247 (372)
.+++|.+ ..|+||||+...||..+...+.+|.+.+.|.... +..|... .++++ +.... ..+.+.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~-----~~~~~~~~~~~~~~-~~~~~-----~~l~~~l~ 70 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS-----LTNWSKAGKAAFDV-FTAAS-----EKDVYGIR 70 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH-----HHHHHTTSCCSSEE-EECCS-----HHHHHTHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC-----HHHHHhcCCCCCcE-EecCc-----HHHHHHHH
Confidence 3677885 5679999999999999988888999999885332 2223222 22333 22211 22233333
Q ss_pred hhhhhchHHHHHHhhCCC
Q 017380 248 RGKEQGFDIVLCDTSGRL 265 (372)
Q Consensus 248 ~~~~~~~d~vl~dt~G~~ 265 (372)
.. ...+|.+++|+.+..
T Consensus 71 ~l-~~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 71 KD-LADYDFAIVDGAGSL 87 (206)
T ss_dssp HH-TTTSSEEEEECCSSS
T ss_pred Hh-cCCCCEEEEECCCCC
Confidence 32 345888899987644
No 499
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.63 E-value=0.016 Score=53.48 Aligned_cols=25 Identities=48% Similarity=0.557 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhh
Q 017380 171 AVVLIVGVNGGGKTTSLGKLAYRLK 195 (372)
Q Consensus 171 ~vi~lvGpNGsGKTTll~~Lag~l~ 195 (372)
..++++|.+|+||||+++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
No 500
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.63 E-value=0.042 Score=51.34 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=36.8
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHhhhhhcCCeEEEeeccccc
Q 017380 169 KPAVVLIVGV-NGGGKTTSLGKLAYRLKNEGAKILMAAGDTFR 210 (372)
Q Consensus 169 ~g~vi~lvGp-NGsGKTTll~~Lag~l~~~~G~V~l~~~d~~r 210 (372)
++.+++|.|+ .|+||||+...||..+...+.+|++++.|..+
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 4679999996 58999999999999998888899999999754
Done!