Query 017381
Match_columns 372
No_of_seqs 149 out of 1865
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 3.8E-25 8.3E-30 193.6 24.5 208 106-340 1-230 (230)
2 KOG4441 Proteins containing BT 99.9 1.9E-21 4.1E-26 189.5 28.6 236 76-349 301-557 (571)
3 PHA02713 hypothetical protein; 99.9 1.2E-21 2.7E-26 191.4 23.7 233 77-346 273-541 (557)
4 KOG4441 Proteins containing BT 99.8 9.1E-18 2E-22 163.8 22.4 199 121-354 301-515 (571)
5 PHA02713 hypothetical protein; 99.8 1.3E-17 2.9E-22 163.2 20.8 201 121-354 272-505 (557)
6 PHA02790 Kelch-like protein; P 99.8 5.4E-17 1.2E-21 156.6 22.4 194 108-344 269-476 (480)
7 PHA03098 kelch-like protein; P 99.8 8.7E-17 1.9E-21 158.2 23.8 233 81-350 269-523 (534)
8 TIGR03547 muta_rot_YjhT mutatr 99.8 3.1E-16 6.8E-21 145.8 23.7 224 105-353 12-313 (346)
9 PLN02153 epithiospecifier prot 99.8 7.1E-16 1.5E-20 143.0 25.9 243 84-347 5-293 (341)
10 PLN02193 nitrile-specifier pro 99.7 2.5E-15 5.3E-20 144.8 25.6 239 86-349 151-421 (470)
11 PRK14131 N-acetylneuraminic ac 99.7 4.8E-15 1E-19 139.1 23.5 226 105-355 33-337 (376)
12 PHA02790 Kelch-like protein; P 99.7 2E-15 4.4E-20 145.8 21.2 185 77-290 288-476 (480)
13 TIGR03548 mutarot_permut cycli 99.7 1.5E-14 3.3E-19 133.1 23.5 201 122-352 40-293 (323)
14 PLN03215 ascorbic acid mannose 99.7 1.2E-14 2.5E-19 132.1 20.1 289 12-345 3-353 (373)
15 PLN02153 epithiospecifier prot 99.7 3.1E-14 6.7E-19 132.1 23.6 202 77-293 51-293 (341)
16 PHA03098 kelch-like protein; P 99.6 5.3E-14 1.1E-18 138.5 20.1 194 77-296 312-523 (534)
17 TIGR03547 muta_rot_YjhT mutatr 99.6 6.1E-13 1.3E-17 123.8 22.9 219 76-328 29-330 (346)
18 PRK14131 N-acetylneuraminic ac 99.6 1.5E-12 3.3E-17 122.2 25.3 234 77-344 51-374 (376)
19 PLN02193 nitrile-specifier pro 99.5 2.2E-12 4.7E-17 124.4 22.0 204 77-295 194-421 (470)
20 TIGR03548 mutarot_permut cycli 99.5 2.1E-12 4.6E-17 118.9 20.0 212 87-327 52-311 (323)
21 KOG4693 Uncharacterized conser 99.3 2.9E-10 6.3E-15 96.3 16.4 229 78-328 46-311 (392)
22 KOG4693 Uncharacterized conser 99.1 5E-09 1.1E-13 88.9 14.7 210 121-353 44-294 (392)
23 PF08268 FBA_3: F-box associat 98.9 1.8E-08 3.9E-13 79.6 12.4 87 202-297 1-94 (129)
24 KOG1230 Protein containing rep 98.9 9.2E-08 2E-12 86.1 17.1 202 121-345 98-347 (521)
25 PF12937 F-box-like: F-box-lik 98.9 1.4E-09 3.1E-14 69.4 2.6 39 13-51 1-39 (47)
26 KOG0379 Kelch repeat-containin 98.9 2E-07 4.4E-12 90.0 18.5 205 78-295 90-312 (482)
27 KOG0379 Kelch repeat-containin 98.8 1.3E-06 2.7E-11 84.6 21.1 204 122-349 89-312 (482)
28 PF07734 FBA_1: F-box associat 98.8 2.2E-07 4.9E-12 76.6 13.4 128 202-347 1-148 (164)
29 PF00646 F-box: F-box domain; 98.7 3.4E-09 7.3E-14 68.1 1.3 44 12-55 2-45 (48)
30 KOG1230 Protein containing rep 98.7 9.6E-07 2.1E-11 79.7 15.6 165 169-354 98-296 (521)
31 smart00256 FBOX A Receptor for 98.7 1.9E-08 4.1E-13 62.1 3.0 38 16-53 1-38 (41)
32 KOG0281 Beta-TrCP (transducin 98.3 5.9E-05 1.3E-09 66.8 15.6 41 12-52 74-118 (499)
33 KOG4152 Host cell transcriptio 97.7 0.0017 3.7E-08 60.7 15.2 206 121-346 57-310 (830)
34 COG3055 Uncharacterized protei 97.5 0.0029 6.3E-08 56.8 13.3 157 121-298 58-269 (381)
35 PF13964 Kelch_6: Kelch motif 97.5 0.00041 8.8E-09 44.5 5.7 39 314-352 6-50 (50)
36 COG3055 Uncharacterized protei 97.3 0.0064 1.4E-07 54.7 13.4 160 170-355 59-272 (381)
37 KOG2120 SCF ubiquitin ligase, 97.2 0.00028 6.1E-09 61.9 2.8 40 12-51 97-136 (419)
38 PF01344 Kelch_1: Kelch motif; 97.1 0.0013 2.8E-08 41.5 4.6 37 313-349 5-47 (47)
39 KOG0274 Cdc4 and related F-box 97.0 0.13 2.9E-06 50.5 19.8 45 10-54 105-149 (537)
40 PF13964 Kelch_6: Kelch motif 96.8 0.0031 6.8E-08 40.4 5.0 38 106-143 7-50 (50)
41 KOG4152 Host cell transcriptio 96.7 0.16 3.6E-06 48.0 16.9 122 156-284 215-362 (830)
42 smart00612 Kelch Kelch domain. 96.4 0.0075 1.6E-07 37.6 4.5 44 158-207 1-47 (47)
43 PF01344 Kelch_1: Kelch motif; 96.4 0.02 4.4E-07 35.9 6.5 37 258-295 10-47 (47)
44 PF07646 Kelch_2: Kelch motif; 96.2 0.008 1.7E-07 38.3 4.0 38 258-295 10-49 (49)
45 PF07646 Kelch_2: Kelch motif; 96.2 0.019 4.1E-07 36.5 5.7 37 313-349 5-49 (49)
46 KOG2997 F-box protein FBX9 [Ge 96.2 0.0023 5.1E-08 56.5 1.5 44 13-56 107-155 (366)
47 PF13418 Kelch_4: Galactose ox 96.2 0.014 3E-07 37.1 4.8 33 317-349 10-48 (49)
48 PF13415 Kelch_3: Galactose ox 96.0 0.016 3.6E-07 36.8 4.6 26 330-355 19-44 (49)
49 PF08450 SGL: SMP-30/Gluconola 95.8 1.2 2.5E-05 39.1 17.2 200 107-346 8-221 (246)
50 PF07250 Glyoxal_oxid_N: Glyox 95.3 0.67 1.5E-05 40.5 13.2 154 170-349 47-209 (243)
51 smart00612 Kelch Kelch domain. 95.1 0.032 6.9E-07 34.7 3.5 25 330-354 15-39 (47)
52 KOG2437 Muskelin [Signal trans 94.5 0.048 1E-06 51.4 4.2 138 197-345 261-419 (723)
53 KOG0316 Conserved WD40 repeat- 93.6 4.3 9.2E-05 35.0 17.1 213 109-341 27-260 (307)
54 PF02191 OLF: Olfactomedin-lik 93.5 5 0.00011 35.3 17.1 132 199-351 71-215 (250)
55 COG4257 Vgb Streptogramin lyas 93.1 3.7 8E-05 36.3 12.9 119 105-235 194-315 (353)
56 PF13415 Kelch_3: Galactose ox 93.0 0.38 8.2E-06 30.4 5.3 27 121-147 19-45 (49)
57 PF13418 Kelch_4: Galactose ox 92.8 0.25 5.5E-06 31.1 4.3 36 259-295 12-48 (49)
58 PF05096 Glu_cyclase_2: Glutam 92.6 4.4 9.5E-05 35.8 13.0 152 158-344 57-209 (264)
59 TIGR01640 F_box_assoc_1 F-box 92.3 3.4 7.4E-05 35.7 12.3 147 77-227 71-230 (230)
60 PF07893 DUF1668: Protein of u 92.3 4.7 0.0001 37.4 13.7 122 102-232 68-214 (342)
61 PRK11138 outer membrane biogen 92.2 10 0.00023 35.8 21.2 181 108-341 118-315 (394)
62 KOG0293 WD40 repeat-containing 92.1 5.2 0.00011 37.2 13.0 180 121-343 291-475 (519)
63 KOG2437 Muskelin [Signal trans 92.0 0.34 7.5E-06 45.9 5.7 158 127-291 235-419 (723)
64 smart00284 OLF Olfactomedin-li 92.0 6.3 0.00014 34.7 13.2 132 199-352 76-221 (255)
65 PF07893 DUF1668: Protein of u 92.0 4.1 9E-05 37.8 12.9 131 206-353 76-224 (342)
66 PRK11028 6-phosphogluconolacto 91.8 10 0.00022 34.7 20.3 192 119-345 10-214 (330)
67 PF13360 PQQ_2: PQQ-like domai 91.3 8.7 0.00019 33.0 20.9 188 109-344 35-236 (238)
68 PLN02772 guanylate kinase 91.0 1.8 3.9E-05 40.6 9.3 77 198-285 26-108 (398)
69 PF13360 PQQ_2: PQQ-like domai 89.9 12 0.00025 32.2 14.4 133 170-342 4-144 (238)
70 PRK11028 6-phosphogluconolacto 88.2 20 0.00044 32.7 23.3 216 105-350 85-318 (330)
71 PF07250 Glyoxal_oxid_N: Glyox 87.8 4.2 9.1E-05 35.6 8.8 88 121-216 46-138 (243)
72 KOG4341 F-box protein containi 87.7 0.34 7.4E-06 45.1 2.0 39 12-50 71-109 (483)
73 KOG0310 Conserved WD40 repeat- 86.0 12 0.00026 35.5 11.0 175 127-343 8-190 (487)
74 TIGR03300 assembly_YfgL outer 85.2 33 0.00071 32.1 21.4 186 108-344 103-305 (377)
75 PRK11138 outer membrane biogen 83.5 40 0.00088 31.8 19.3 132 169-342 215-357 (394)
76 PF13854 Kelch_5: Kelch motif 83.4 2.2 4.8E-05 25.8 3.6 38 244-284 2-39 (42)
77 KOG0292 Vesicle coat complex C 82.6 42 0.00092 34.8 13.7 84 176-283 236-321 (1202)
78 PF13013 F-box-like_2: F-box-l 79.4 2.4 5.3E-05 31.9 3.2 39 3-41 12-50 (109)
79 PF10282 Lactonase: Lactonase, 78.2 57 0.0012 30.1 17.2 170 104-292 148-332 (345)
80 KOG1310 WD40 repeat protein [G 77.9 13 0.00028 36.1 8.1 113 108-226 59-179 (758)
81 PLN02919 haloacid dehalogenase 73.6 1.4E+02 0.0031 32.5 18.0 166 108-284 692-889 (1057)
82 TIGR03074 PQQ_membr_DH membran 72.8 57 0.0012 33.9 12.0 32 199-231 187-220 (764)
83 COG4946 Uncharacterized protei 71.6 99 0.0022 29.8 17.2 141 77-233 288-439 (668)
84 PF08450 SGL: SMP-30/Gluconola 71.3 62 0.0014 28.0 10.8 110 206-345 11-129 (246)
85 PF12768 Rax2: Cortical protei 69.0 88 0.0019 28.1 11.6 127 217-364 16-147 (281)
86 PF10282 Lactonase: Lactonase, 68.7 99 0.0021 28.6 21.5 154 168-346 165-332 (345)
87 PLN02772 guanylate kinase 68.5 13 0.00029 34.9 5.9 53 158-213 36-93 (398)
88 TIGR03866 PQQ_ABC_repeats PQQ- 67.5 86 0.0019 27.5 20.9 95 119-228 9-106 (300)
89 KOG0294 WD40 repeat-containing 67.0 1E+02 0.0022 28.1 12.3 89 121-226 149-238 (362)
90 KOG2502 Tub family proteins [G 66.8 3.4 7.5E-05 37.5 1.7 39 11-49 43-89 (355)
91 PLN02919 haloacid dehalogenase 66.2 2E+02 0.0044 31.3 22.3 224 106-342 631-892 (1057)
92 COG1520 FOG: WD40-like repeat 65.4 1.2E+02 0.0026 28.3 12.3 108 202-344 64-177 (370)
93 KOG0647 mRNA export protein (c 63.9 93 0.002 28.1 9.8 63 206-283 83-145 (347)
94 KOG2055 WD40 repeat protein [G 63.5 1.4E+02 0.0031 28.6 13.4 28 206-233 268-296 (514)
95 PF07433 DUF1513: Protein of u 63.5 1.2E+02 0.0026 27.6 23.4 215 112-349 19-258 (305)
96 KOG0310 Conserved WD40 repeat- 63.3 1.5E+02 0.0031 28.6 15.8 129 206-368 165-298 (487)
97 PF12768 Rax2: Cortical protei 63.2 85 0.0018 28.2 9.8 113 169-293 16-130 (281)
98 cd01207 Ena-Vasp Enabled-VASP- 62.7 34 0.00073 25.9 6.0 43 121-163 9-51 (111)
99 TIGR03300 assembly_YfgL outer 62.6 1.3E+02 0.0029 27.9 15.0 132 169-341 75-211 (377)
100 PF12458 DUF3686: ATPase invol 61.8 66 0.0014 30.5 8.9 123 122-282 254-383 (448)
101 COG2706 3-carboxymuconate cycl 61.4 1.4E+02 0.0029 27.6 27.1 161 167-352 165-337 (346)
102 PTZ00421 coronin; Provisional 59.9 1.8E+02 0.0039 28.6 20.9 200 110-345 87-297 (493)
103 KOG0319 WD40-repeat-containing 58.6 2.2E+02 0.0047 29.1 14.8 109 105-231 25-141 (775)
104 PTZ00420 coronin; Provisional 58.4 2.1E+02 0.0045 28.8 20.6 202 111-346 87-301 (568)
105 TIGR02276 beta_rpt_yvtn 40-res 58.3 27 0.00058 20.4 4.2 25 319-343 3-27 (42)
106 PF13859 BNR_3: BNR repeat-lik 57.0 33 0.00071 31.3 6.2 81 201-295 125-217 (310)
107 COG4257 Vgb Streptogramin lyas 56.0 1.5E+02 0.0033 26.5 17.5 115 203-346 196-313 (353)
108 PF09372 PRANC: PRANC domain; 55.9 9.9 0.00021 27.9 2.2 25 11-35 70-94 (97)
109 COG3386 Gluconolactonase [Carb 55.7 1.6E+02 0.0034 27.0 10.3 48 207-266 37-84 (307)
110 KOG0640 mRNA cleavage stimulat 54.7 1.1E+02 0.0024 27.8 8.7 143 169-340 238-385 (430)
111 PF13570 PQQ_3: PQQ-like domai 54.2 19 0.00042 21.2 3.0 26 200-226 15-40 (40)
112 KOG0639 Transducin-like enhanc 53.4 92 0.002 30.2 8.5 74 249-342 470-543 (705)
113 KOG1445 Tumor-specific antigen 53.0 80 0.0017 31.5 8.2 126 215-363 740-869 (1012)
114 KOG0279 G protein beta subunit 51.7 1.4E+02 0.003 26.7 8.7 131 206-365 116-247 (315)
115 PF03178 CPSF_A: CPSF A subuni 51.4 1.2E+02 0.0027 27.5 9.3 75 258-352 97-173 (321)
116 PF01011 PQQ: PQQ enzyme repea 51.2 40 0.00087 19.6 4.0 24 320-344 1-24 (38)
117 KOG2055 WD40 repeat protein [G 50.7 2.4E+02 0.0051 27.2 15.1 143 112-283 272-417 (514)
118 KOG0286 G-protein beta subunit 50.3 1.9E+02 0.0042 26.0 15.0 139 120-284 76-218 (343)
119 KOG0294 WD40 repeat-containing 50.1 1.4E+02 0.003 27.2 8.6 29 199-227 45-73 (362)
120 TIGR03866 PQQ_ABC_repeats PQQ- 49.4 1.8E+02 0.0039 25.4 19.7 198 108-344 39-243 (300)
121 PF09910 DUF2139: Uncharacteri 49.1 2.1E+02 0.0045 26.0 13.5 106 217-343 78-186 (339)
122 KOG0289 mRNA splicing factor [ 48.1 2.5E+02 0.0055 26.8 14.1 102 168-295 368-473 (506)
123 KOG0291 WD40-repeat-containing 47.5 3.4E+02 0.0073 28.0 17.2 156 107-295 358-518 (893)
124 TIGR03075 PQQ_enz_alc_DH PQQ-d 47.0 3E+02 0.0065 27.3 13.2 111 110-232 69-198 (527)
125 PF13919 ASXH: Asx homology do 46.9 14 0.0003 29.2 1.9 46 8-53 39-104 (138)
126 smart00564 PQQ beta-propeller 46.9 49 0.0011 18.1 4.6 26 318-344 5-30 (33)
127 PRK04043 tolB translocation pr 43.7 3E+02 0.0065 26.3 19.2 188 120-347 212-409 (419)
128 PF14781 BBS2_N: Ciliary BBSom 43.0 1.2E+02 0.0026 23.9 6.4 59 216-290 72-133 (136)
129 PRK05137 tolB translocation pr 41.9 3.2E+02 0.0069 26.1 21.7 101 120-232 225-329 (435)
130 PTZ00334 trans-sialidase; Prov 41.5 87 0.0019 32.5 6.9 81 201-295 264-354 (780)
131 KOG0306 WD40-repeat-containing 40.6 4.3E+02 0.0094 27.3 14.4 62 108-179 382-444 (888)
132 KOG0281 Beta-TrCP (transducin 40.5 3E+02 0.0066 25.5 10.2 111 204-344 244-354 (499)
133 PF05096 Glu_cyclase_2: Glutam 39.6 2.8E+02 0.006 24.7 12.9 138 78-231 70-209 (264)
134 PRK04792 tolB translocation pr 39.0 3.6E+02 0.0079 26.0 21.9 100 121-232 242-345 (448)
135 smart00284 OLF Olfactomedin-li 38.5 2.8E+02 0.0061 24.5 13.6 142 108-266 81-242 (255)
136 KOG0308 Conserved WD40 repeat- 37.6 1E+02 0.0022 30.9 6.3 120 204-341 82-204 (735)
137 KOG0299 U3 snoRNP-associated p 36.9 3.9E+02 0.0085 25.7 12.2 34 103-136 206-239 (479)
138 PF03088 Str_synth: Strictosid 36.8 56 0.0012 23.6 3.6 21 330-350 37-58 (89)
139 PF02897 Peptidase_S9_N: Proly 36.7 3.7E+02 0.008 25.3 22.1 156 155-345 238-411 (414)
140 cd01206 Homer Homer type EVH1 36.1 85 0.0018 23.6 4.4 42 120-164 10-52 (111)
141 KOG0291 WD40-repeat-containing 35.0 5.3E+02 0.012 26.7 15.8 110 206-345 361-473 (893)
142 KOG4378 Nuclear protein COP1 [ 34.6 69 0.0015 30.9 4.6 79 274-370 186-271 (673)
143 TIGR03075 PQQ_enz_alc_DH PQQ-d 34.6 2.5E+02 0.0055 27.8 9.0 77 170-267 442-522 (527)
144 PRK04792 tolB translocation pr 34.3 4.3E+02 0.0094 25.5 19.3 151 158-346 231-390 (448)
145 PF06433 Me-amine-dh_H: Methyl 34.1 3.9E+02 0.0084 24.8 11.1 75 258-344 248-326 (342)
146 PF03022 MRJP: Major royal jel 33.1 3.6E+02 0.0079 24.2 9.7 83 258-347 10-106 (287)
147 PRK05137 tolB translocation pr 33.1 4.4E+02 0.0095 25.2 18.8 187 121-346 182-374 (435)
148 PF01436 NHL: NHL repeat; Int 32.3 87 0.0019 16.8 3.5 21 315-335 8-28 (28)
149 TIGR02800 propeller_TolB tol-p 32.1 4.3E+02 0.0094 24.8 19.1 187 120-346 169-362 (417)
150 TIGR03074 PQQ_membr_DH membran 31.8 1.7E+02 0.0038 30.5 7.5 61 105-165 686-747 (764)
151 KOG4499 Ca2+-binding protein R 31.2 65 0.0014 28.1 3.6 45 314-359 217-261 (310)
152 TIGR02658 TTQ_MADH_Hv methylam 30.9 4.5E+02 0.0097 24.6 18.9 194 105-341 52-290 (352)
153 KOG0292 Vesicle coat complex C 30.9 1.6E+02 0.0034 31.0 6.6 53 274-340 227-282 (1202)
154 PF02239 Cytochrom_D1: Cytochr 30.1 4.7E+02 0.01 24.5 15.4 191 112-344 7-208 (369)
155 KOG1036 Mitotic spindle checkp 29.6 4.3E+02 0.0094 24.0 10.3 133 168-341 34-166 (323)
156 TIGR03032 conserved hypothetic 29.3 1.7E+02 0.0037 26.8 6.0 56 199-268 205-260 (335)
157 KOG0285 Pleiotropic regulator 28.7 4.9E+02 0.011 24.3 10.8 94 215-340 171-267 (460)
158 KOG0303 Actin-binding protein 28.2 5.2E+02 0.011 24.5 11.6 109 205-341 183-297 (472)
159 KOG0647 mRNA export protein (c 28.1 4.6E+02 0.01 23.9 11.7 148 108-285 81-230 (347)
160 TIGR03032 conserved hypothetic 28.0 1E+02 0.0022 28.2 4.4 36 317-352 210-245 (335)
161 PF14583 Pectate_lyase22: Olig 27.4 5.4E+02 0.012 24.4 10.6 109 217-349 168-283 (386)
162 PF15408 PH_7: Pleckstrin homo 27.1 34 0.00073 24.3 1.0 24 30-53 76-99 (104)
163 PF14377 DUF4414: Domain of un 26.9 40 0.00086 25.3 1.5 20 8-27 1-20 (108)
164 PF02191 OLF: Olfactomedin-lik 26.6 4.5E+02 0.0097 23.2 13.0 141 109-266 77-237 (250)
165 KOG0316 Conserved WD40 repeat- 26.2 4.5E+02 0.0098 23.1 9.9 98 120-230 80-178 (307)
166 COG2706 3-carboxymuconate cycl 25.6 5.4E+02 0.012 23.8 17.5 161 112-291 158-330 (346)
167 TIGR02608 delta_60_rpt delta-6 25.3 1.9E+02 0.0041 18.7 4.2 30 258-287 10-39 (55)
168 KOG0289 mRNA splicing factor [ 25.0 6.2E+02 0.013 24.3 12.3 74 105-185 395-470 (506)
169 PF14377 DUF4414: Domain of un 23.6 65 0.0014 24.2 2.1 22 5-26 42-63 (108)
170 KOG0266 WD40 repeat-containing 23.5 6.8E+02 0.015 24.2 12.7 107 206-342 214-322 (456)
171 KOG3926 F-box proteins [Amino 23.3 57 0.0012 28.9 1.9 31 12-42 201-232 (332)
172 KOG2919 Guanine nucleotide-bin 23.1 1.7E+02 0.0036 26.9 4.8 51 317-370 306-360 (406)
173 KOG0282 mRNA splicing factor [ 23.0 7E+02 0.015 24.2 12.0 22 208-229 313-334 (503)
174 KOG0274 Cdc4 and related F-box 22.7 7.7E+02 0.017 24.6 11.7 109 202-343 254-364 (537)
175 TIGR03118 PEPCTERM_chp_1 conse 21.7 6.3E+02 0.014 23.2 10.6 122 208-343 153-284 (336)
176 KOG1332 Vesicle coat complex C 21.5 5.7E+02 0.012 22.6 12.5 31 258-293 266-296 (299)
177 PF03022 MRJP: Major royal jel 21.3 6E+02 0.013 22.8 13.3 32 315-346 192-227 (287)
178 PLN00033 photosystem II stabil 21.1 7.2E+02 0.016 23.6 12.2 29 318-347 337-365 (398)
179 PF07569 Hira: TUP1-like enhan 20.5 5.5E+02 0.012 22.0 8.8 78 102-185 14-103 (219)
180 TIGR00244 transcriptional regu 20.4 64 0.0014 25.7 1.5 29 18-46 109-137 (147)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.94 E-value=3.8e-25 Score=193.64 Aligned_cols=208 Identities=25% Similarity=0.415 Sum_probs=149.7
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCC---CC--ceeEEEEeCCCCEEEEEEeecC---CCceEEEEECC
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP---FD--FELLTLVSTPSGYKIFMLFAKS---FPNYAFVYDST 177 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~---~~--~~~~~~~~~~~~ykvv~~~~~~---~~~~~~vy~s~ 177 (372)
+++||||+|+... ..++||||.|++++.||+++.+ .. ..++|+++.+++|||+.+.... ....++||+++
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 3689999999764 7899999999999999976542 11 2577888888999999987642 34589999999
Q ss_pred CCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeec-cCCCCccccccCCCcc----
Q 017381 178 DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWET-PNDANDHMTMMLPHEL---- 247 (372)
Q Consensus 178 ~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~---- 247 (372)
+++|+... ..+.... ....++++||.+||+.... ..|++||+.+++|+. +. +|...
T Consensus 79 ~~~Wr~~~--~~~~~~~---~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~---------~P~~~~~~~ 144 (230)
T TIGR01640 79 SNSWRTIE--CSPPHHP---LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP---------LPCGNSDSV 144 (230)
T ss_pred CCCccccc--cCCCCcc---ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee---------cCccccccc
Confidence 99999987 3333111 1223999999999998532 279999999999994 65 44332
Q ss_pred cccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEE
Q 017381 248 TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVC 325 (372)
Q Consensus 248 ~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 325 (372)
....|+ + ++|+|+++.... ....++||.|++.+. |++..+++.....++.. ...+.++.+++.|++.
T Consensus 145 ~~~~L~-~--~~G~L~~v~~~~---~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~-----~~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 145 DYLSLI-N--YKGKLAVLKQKK---DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD-----DNFLSGFTDKGEIVLC 213 (230)
T ss_pred cceEEE-E--ECCEEEEEEecC---CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhh-----heeEeEEeeCCEEEEE
Confidence 234566 4 899999987632 124599999986643 99999987532222221 1224566777888887
Q ss_pred eec-CCe-EEEEECCCC
Q 017381 326 CYT-WPE-ILYYNVARR 340 (372)
Q Consensus 326 ~~~-~~~-v~~yd~~~~ 340 (372)
.+. ... ++.||++++
T Consensus 214 ~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 214 CEDENPFYIFYYNVGEN 230 (230)
T ss_pred eCCCCceEEEEEeccCC
Confidence 753 133 999999885
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=1.9e-21 Score=189.47 Aligned_cols=236 Identities=15% Similarity=0.170 Sum_probs=178.8
Q ss_pred CccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCCC------ceEEEEeccccceeccCCCCCCCCceeEE
Q 017381 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLT 149 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~~~~lP~~~~~~~~~~~~ 149 (372)
+.+..||+..+.|..+. .++.++....+++.+|.|++.++.. +.+..|||.+++|..+|+|..++...+++
T Consensus 301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 45678999999999885 2233455666788899888877643 47899999999999999998877666555
Q ss_pred EEeCCCCEEEEEEeecCCC---ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------CcEEE
Q 017381 150 LVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIV 220 (372)
Q Consensus 150 ~~~~~~~ykvv~~~~~~~~---~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------~~~i~ 220 (372)
... .+|+++||.... ..+|.||+.+++|...+ +|+. .+..+.++.++|++|.+++. -..+.
T Consensus 378 ~l~----g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 378 VLD----GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred EEC----CEEEEEeccccccccccEEEecCCCCcccccC--CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEE
Confidence 432 389999986532 48999999999999998 6654 33456688999999999872 25799
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHH
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMC 299 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~ 299 (372)
+||+.+++|+.+. | |+..+....+++ .+|+||++||........+++.+ |+.++ |+.+..|....
T Consensus 448 ~YDP~t~~W~~~~-~-------M~~~R~~~g~a~---~~~~iYvvGG~~~~~~~~~VE~y--dp~~~~W~~v~~m~~~r- 513 (571)
T KOG4441|consen 448 CYDPETNTWTLIA-P-------MNTRRSGFGVAV---LNGKIYVVGGFDGTSALSSVERY--DPETNQWTMVAPMTSPR- 513 (571)
T ss_pred EEcCCCCceeecC-C-------cccccccceEEE---ECCEEEEECCccCCCccceEEEE--cCCCCceeEcccCcccc-
Confidence 9999999999974 6 777666666664 89999999996542223344555 66665 99997775332
Q ss_pred HHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCC
Q 017381 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~ 349 (372)
....++..++++|+.++. .+.|.+||+.+++|+.++.+.
T Consensus 514 -----------s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~ 557 (571)
T KOG4441|consen 514 -----------SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPE 557 (571)
T ss_pred -----------ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCcc
Confidence 335677789999999853 235999999999999998833
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.89 E-value=1.2e-21 Score=191.44 Aligned_cols=233 Identities=11% Similarity=0.112 Sum_probs=169.1
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCCCceeEEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFDFELLTL 150 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~ 150 (372)
....||+..++|..++ ++|.....+.+++.+|.|++.++. .+.++.|||.+++|..+|+++.++...+++.
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 3467999999999885 222333344566778877776652 2468899999999999999987766554443
Q ss_pred EeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC-----------
Q 017381 151 VSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------- 216 (372)
Q Consensus 151 ~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----------- 216 (372)
... +|+++||... ...+++||+.+++|+..+ ++|. .+....++.++|++|.+++..
T Consensus 350 ~~g----~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 IDD----TIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPI----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred ECC----EEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCc----ccccccEEEECCEEEEEeCCCccccccccccc
Confidence 322 8999998643 347999999999999998 6765 223456788999999998632
Q ss_pred ------------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 217 ------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 217 ------------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
..+.+||+.+++|+.+. | ||..+....+++ .+|+||++||....... .-.|..+|+
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~-------m~~~r~~~~~~~---~~~~IYv~GG~~~~~~~-~~~ve~Ydp 487 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-N-------FWTGTIRPGVVS---HKDDIYVVCDIKDEKNV-KTCIFRYNT 487 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecC-C-------CCcccccCcEEE---ECCEEEEEeCCCCCCcc-ceeEEEecC
Confidence 35899999999999864 5 666666666774 89999999985321111 112455577
Q ss_pred CC--CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC--eEEEEECCCCceEECC
Q 017381 285 GG--NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP--EILYYNVARRTWHWLP 346 (372)
Q Consensus 285 ~~--~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~yd~~~~~w~~v~ 346 (372)
.+ +|+.+..||... ....++..+|+||+.++..+ .+.+||+.|++|+.++
T Consensus 488 ~~~~~W~~~~~m~~~r------------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 488 NTYNGWELITTTESRL------------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCCCeeEccccCccc------------ccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 65 499999887543 22456677999999986544 6899999999999875
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.80 E-value=9.1e-18 Score=163.81 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=151.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-C---CceEEEEECCCCCccccccCCCCcccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (372)
..+..|||.+++|..+++++.++...+++.... +|+++||.. . ...+++||+.+++|+..+ +|.. .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~----~ 370 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNT----K 370 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccCCCcccceEEEecCCCCceeccC--CccC----c
Confidence 578899999999999999998777666655433 899999876 2 249999999999999988 6654 3
Q ss_pred CCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+.....+.++|.+|.+++.. ..+..||+.+++|+.+. | |+..+.....++ .+|+||++||....
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~-------m~~~r~~~gv~~---~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-P-------MLTRRSGHGVAV---LGGKLYIIGGGDGS 439 (571)
T ss_pred cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-C-------CCcceeeeEEEE---ECCEEEEEcCcCCC
Confidence 34566789999999998732 46999999999999974 5 555555555553 89999999995432
Q ss_pred C-ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEE
Q 017381 272 G-ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHW 344 (372)
Q Consensus 272 ~-~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~ 344 (372)
. ....++.| |+.++ |+.+..|+... ....++..++.||+.++.. ..|..||+++++|+.
T Consensus 440 ~~~l~sve~Y--DP~t~~W~~~~~M~~~R------------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 440 SNCLNSVECY--DPETNTWTLIAPMNTRR------------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ccccceEEEE--cCCCCceeecCCccccc------------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 2 22455555 77766 99999886432 2244667889999998633 248999999999999
Q ss_pred CCCCCCCCCC
Q 017381 345 LPSCPSLPHK 354 (372)
Q Consensus 345 v~~~~~~~~~ 354 (372)
++.++..++.
T Consensus 506 v~~m~~~rs~ 515 (571)
T KOG4441|consen 506 VAPMTSPRSA 515 (571)
T ss_pred cccCcccccc
Confidence 9878777665
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.78 E-value=1.3e-17 Score=163.18 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=146.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-C---CceEEEEECCCCCccccccCCCCcccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (372)
..+..|||.+++|..+++++.++...+.+... -+|+++||.. . ...++.||+.+++|...+ +||. .
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~----~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~----~ 341 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVD----NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIK----N 341 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEEC----CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcc----h
Confidence 35788999999999999988766544433322 2899999853 1 357999999999999888 6664 2
Q ss_pred CCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+.....+.++|++|.+++.. ..+.+||+.+++|+.+. | +|..+.....++ ++|+||++||....
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~-------mp~~r~~~~~~~---~~g~IYviGG~~~~ 410 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-D-------MPIALSSYGMCV---LDQYIYIIGGRTEH 410 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-C-------CCcccccccEEE---ECCEEEEEeCCCcc
Confidence 34556889999999998742 46899999999999864 5 777666666664 89999999985321
Q ss_pred C----------------ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----
Q 017381 272 G----------------ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----- 329 (372)
Q Consensus 272 ~----------------~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 329 (372)
. ....-.+..+|+..+ |+.+..|+... ....++..+|+||+.++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r------------~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT------------IRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCccc------------ccCcEEEECCEEEEEeCCCCCCcc
Confidence 0 001124666677766 99998876432 1133556788999997532
Q ss_pred -CeEEEEECCC-CceEECCCCCCCCCC
Q 017381 330 -PEILYYNVAR-RTWHWLPSCPSLPHK 354 (372)
Q Consensus 330 -~~v~~yd~~~-~~w~~v~~~~~~~~~ 354 (372)
..+.+||+++ ++|+.++.+|.++..
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ceeEEEecCCCCCCeeEccccCccccc
Confidence 2368999999 899999998876653
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.77 E-value=5.4e-17 Score=156.63 Aligned_cols=194 Identities=9% Similarity=0.065 Sum_probs=140.5
Q ss_pred ecCcEEEEecCC-----CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc
Q 017381 108 SSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (372)
Q Consensus 108 s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 182 (372)
..++.+++.++. ...+..|||.+++|..+|+++.++...+.+.. +.+|+++||......++.||+.+++|.
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEE
Confidence 355655555542 24678899999999999999876654433322 228999998755567999999999999
Q ss_pred ccccCCCCccccccCCCcccEEECCEEEEeeeCC---cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCC
Q 017381 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES 259 (372)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~---~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~ 259 (372)
..+ ++|. .+..+.++.++|++|.+++.. ..+.+||+.+++|+.+. | +|..+.....++ .+
T Consensus 345 ~~~--~l~~----~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~-------m~~~r~~~~~~~---~~ 407 (480)
T PHA02790 345 NMP--SLLK----PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-S-------TYYPHYKSCALV---FG 407 (480)
T ss_pred ECC--CCCC----CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-C-------CCCccccceEEE---EC
Confidence 988 6664 223566889999999998732 45789999999999864 4 555544455554 89
Q ss_pred CeEEEEEeeecCCccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEE
Q 017381 260 NKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEIL 333 (372)
Q Consensus 260 g~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~ 333 (372)
|+||++|+. .++|. ..+ +|+.+..|+... ....++..+|+||+.++.. ..+.
T Consensus 408 ~~IYv~GG~--------~e~yd--p~~~~W~~~~~m~~~r------------~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 408 RRLFLVGRN--------AEFYC--ESSNTWTLIDDPIYPR------------DNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred CEEEEECCc--------eEEec--CCCCcEeEcCCCCCCc------------cccEEEEECCEEEEECCcCCCcccceEE
Confidence 999999862 35664 444 499988876432 2244566788999998632 4589
Q ss_pred EEECCCCceEE
Q 017381 334 YYNVARRTWHW 344 (372)
Q Consensus 334 ~yd~~~~~w~~ 344 (372)
+||+++++|+-
T Consensus 466 ~Yd~~~~~W~~ 476 (480)
T PHA02790 466 VYNNRTYSWNI 476 (480)
T ss_pred EEECCCCeEEe
Confidence 99999999974
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.77 E-value=8.7e-17 Score=158.16 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=156.4
Q ss_pred ccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCCCceeEEEEeCC
Q 017381 81 YDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 81 ~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~ 154 (372)
|++...+|..++-. +. ...+..+..++.+++.++. .+.++.|||.+++|..+|+++.++..+..+...
T Consensus 269 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~-- 342 (534)
T PHA03098 269 NYSPLSEINTIIDI---HY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN-- 342 (534)
T ss_pred cchhhhhcccccCc---cc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC--
Confidence 45555666655311 11 1222344556655555442 136899999999999999988766544433322
Q ss_pred CCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------CcEEEEEecC
Q 017381 155 SGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIVRFDLE 225 (372)
Q Consensus 155 ~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------~~~i~~yD~~ 225 (372)
-+|+++||... ...+++||+.+++|+..+ ++|. .+..+.++.++|++|.+++. ...+..||+.
T Consensus 343 --~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 343 --NRIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIF----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred --CEEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCc----CCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence 27999998642 347999999999999888 6664 22456678899999999872 1468999999
Q ss_pred CCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCc-cceEEEEEEcCCCC-EEEEEecChHHHHHhh
Q 017381 226 NGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI-STTMKLWELGCGGN-WIEVERVPEMMCRKFM 303 (372)
Q Consensus 226 ~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~-~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~ 303 (372)
+++|+.+. + +|..+..+..+. .+|+||++||...... ...-.+|.+|..++ |+++..+|...
T Consensus 415 t~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----- 478 (534)
T PHA03098 415 TNKWSKGS-P-------LPISHYGGCAIY---HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR----- 478 (534)
T ss_pred CCeeeecC-C-------CCccccCceEEE---ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-----
Confidence 99999864 4 666555555553 7999999998532111 01123777787765 99987765321
Q ss_pred hhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCCC
Q 017381 304 SVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPS 350 (372)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~~ 350 (372)
.....+..++.||+.++. .+.+.+||+++++|+.++..|-
T Consensus 479 -------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 479 -------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred -------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 112233457888888753 2469999999999999987553
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.75 E-value=3.1e-16 Score=145.83 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=145.4
Q ss_pred EEEecCcEEEEecC-CCceEEEEec--cccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCC---------CceE
Q 017381 105 LLSSSKGLLCFSLP-SSSSFLVCNL--VTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (372)
Q Consensus 105 ~~~s~~Gll~~~~~-~~~~~~v~NP--~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~ 171 (372)
..++.++-|++.++ ..+.++++|+ .+++|..+|+++. ++....++... -+|+++||... ...+
T Consensus 12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~----~~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID----GKLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC----CEEEEEeCCCCCCCCCcceecccE
Confidence 34456776666554 3357888885 6788999999873 44443333322 28999998632 2479
Q ss_pred EEEECCCCCccccccCCCCccccccCCCcccE-EECCEEEEeeeCC----------------------------------
Q 017381 172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FYKGSLYFTTPEP---------------------------------- 216 (372)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~~G~~y~~~~~~---------------------------------- 216 (372)
++||+.+++|+.++. .+|. .+..+.++ .++|+||.+++..
T Consensus 88 ~~Yd~~~~~W~~~~~-~~p~----~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 88 YRYDPKKNSWQKLDT-RSPV----GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred EEEECCCCEEecCCC-CCCC----cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 999999999999861 2222 11223334 6899999997631
Q ss_pred -----cEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEEeeecCC-ccceEEEEEEcCCCC-E
Q 017381 217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGGN-W 288 (372)
Q Consensus 217 -----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~~~~~~~-~~~~i~vw~l~~~~~-W 288 (372)
..+.+||+.+++|+.+. + +|. .+....+++ .+|+||++++..... ....+.++.++.+.+ |
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLG-E-------NPFLGTAGSAIVH---KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HcCccceEEEEECCCCceeECc-c-------CCCCcCCCceEEE---ECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 46899999999999874 5 664 344455553 899999999854221 112344455555544 9
Q ss_pred EEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEECC
Q 017381 289 IEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWLP 346 (372)
Q Consensus 289 ~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~v~ 346 (372)
+++..||........ ......++..+++||+.++.. ..+.+||+++++|+.++
T Consensus 232 ~~~~~m~~~r~~~~~-----~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 232 NKLPPLPPPKSSSQE-----GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eecCCCCCCCCCccc-----cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 999888643210000 001122445788899987531 14789999999999999
Q ss_pred CCCCCCC
Q 017381 347 SCPSLPH 353 (372)
Q Consensus 347 ~~~~~~~ 353 (372)
.+|.++.
T Consensus 307 ~lp~~~~ 313 (346)
T TIGR03547 307 KLPQGLA 313 (346)
T ss_pred CCCCCce
Confidence 8887653
No 9
>PLN02153 epithiospecifier protein
Probab=99.75 E-value=7.1e-16 Score=143.02 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=150.5
Q ss_pred CCCCeeeecCCC-CCCCCCceEEEEecCcEEEEecCC-------CceEEEEeccccceeccCCCC-CCCC-ceeEEEEeC
Q 017381 84 THGTWRRLSLPY-SLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPT-YPFD-FELLTLVST 153 (372)
Q Consensus 84 ~~~~w~~l~~~~-~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~~~~lP~~~-~~~~-~~~~~~~~~ 153 (372)
....|..++... ..|.++..+.+++.++.|++.++. .+.+++||+.+++|..+++++ .++. ...++.+..
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 456788775421 123344444556667776665542 136899999999999998764 2332 222333222
Q ss_pred CCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccc-cCCCcccEEECCEEEEeeeCC-----------cE
Q 017381 154 PSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILS-QSSHQEGVFYKGSLYFTTPEP-----------FS 218 (372)
Q Consensus 154 ~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~-~~~~~~~v~~~G~~y~~~~~~-----------~~ 218 (372)
. -+|+++||... ...+++||+++++|+.++ .++....+ .+..+.++..++++|++++.. ..
T Consensus 85 ~--~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 85 G--TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT--KLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred C--CEEEEECCCCCCCccCcEEEEECCCCEEEEec--cCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 2 28999988532 247999999999999876 44210001 234566788999999997631 25
Q ss_pred EEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC----C--ccceEEEEEEcCCCC-EEEE
Q 017381 219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN----G--ISTTMKLWELGCGGN-WIEV 291 (372)
Q Consensus 219 i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~----~--~~~~i~vw~l~~~~~-W~~v 291 (372)
+.+||+++++|..+..++. .|..+..+.+++ .+|+||++++.... + ....-+++.+|...+ |+++
T Consensus 161 v~~yd~~~~~W~~l~~~~~-----~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGE-----NFEKRGGAGFAV---VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred EEEEECCCCeEeeCCCCCC-----CCCCCCcceEEE---ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 8899999999998642210 123333344553 89999999874210 0 011124566666655 9998
Q ss_pred EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec--------------CCeEEEEECCCCceEECCC
Q 017381 292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT--------------WPEILYYNVARRTWHWLPS 347 (372)
Q Consensus 292 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~v~~yd~~~~~w~~v~~ 347 (372)
..+.... .......++..++.||+.++. .+.+.+||+++++|+.+..
T Consensus 233 ~~~g~~P---------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 233 ETTGAKP---------SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccCCCC---------CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 6532110 011223345567888888763 1368999999999999874
No 10
>PLN02193 nitrile-specifier protein
Probab=99.72 E-value=2.5e-15 Score=144.79 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=153.2
Q ss_pred CCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-------CceEEEEeccccceeccCCCC-CCC-CceeEEEEeCCCC
Q 017381 86 GTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPT-YPF-DFELLTLVSTPSG 156 (372)
Q Consensus 86 ~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~~~~lP~~~-~~~-~~~~~~~~~~~~~ 156 (372)
.+|.+++.....|.++..+.++..++.|++.++. .+.+++||+.+++|..+|+.. .+. .+..++.+...
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-- 228 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-- 228 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--
Confidence 6899886432234445555555666666555442 135899999999999887642 222 12222222211
Q ss_pred EEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCe
Q 017381 157 YKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGI 228 (372)
Q Consensus 157 ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~ 228 (372)
-+|+++++... ...+++||+.+++|+.+. .++.... .+..+..+.+++++|++++. ...+.+||+.+++
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLT--PVEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcC--cCCCCCC-CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 27899988542 358999999999999887 4421111 23456677889999999863 2458899999999
Q ss_pred eeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhcc
Q 017381 229 WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCY 307 (372)
Q Consensus 229 w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~ 307 (372)
|+.+..++. +|..+..+.+++ .+|+||++++... ...-++|.+|..++ |+++..++....
T Consensus 306 W~~~~~~~~-----~~~~R~~~~~~~---~~gkiyviGG~~g---~~~~dv~~yD~~t~~W~~~~~~g~~P~-------- 366 (470)
T PLN02193 306 WFHCSTPGD-----SFSIRGGAGLEV---VQGKVWVVYGFNG---CEVDDVHYYDPVQDKWTQVETFGVRPS-------- 366 (470)
T ss_pred EEeCCCCCC-----CCCCCCCcEEEE---ECCcEEEEECCCC---CccCceEEEECCCCEEEEeccCCCCCC--------
Confidence 998754321 333344445553 7999999998431 12346777777665 999876521110
Q ss_pred CCCceEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEECCCCC
Q 017381 308 HNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 308 ~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~v~~~~ 349 (372)
.+....++..++.||+.+... +.+.+||+.+++|++++..+
T Consensus 367 -~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 367 -ERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred -CcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 112233456678888887531 24899999999999997543
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.70 E-value=4.8e-15 Score=139.10 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=143.6
Q ss_pred EEEecCcEEEEecC-CCceEEEEecc--ccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCC---------CceE
Q 017381 105 LLSSSKGLLCFSLP-SSSSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (372)
Q Consensus 105 ~~~s~~Gll~~~~~-~~~~~~v~NP~--t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~ 171 (372)
..++.++-|++.++ ....++++|+. +++|..+|+++. ++.....+... -+|+++||... ...+
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~----~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID----GKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC----CEEEEEcCCCCCCCCCceeEcccE
Confidence 34556776666443 34568888876 478999998763 44333222221 27999988542 2479
Q ss_pred EEEECCCCCccccccCCCCccccccCCCcccEE-ECCEEEEeeeCC----------------------------------
Q 017381 172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVF-YKGSLYFTTPEP---------------------------------- 216 (372)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~-~~G~~y~~~~~~---------------------------------- 216 (372)
++||+.+++|+.++ ...+ .+ ...+.++. .+|+||.+++..
T Consensus 109 ~~YD~~~n~W~~~~--~~~p--~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 109 YKYDPKTNSWQKLD--TRSP--VG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred EEEeCCCCEEEeCC--CCCC--Cc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 99999999999987 3211 11 12233444 799999998632
Q ss_pred -----cEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEEeeecCCccceEEEE--EEcCCCC-
Q 017381 217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLW--ELGCGGN- 287 (372)
Q Consensus 217 -----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw--~l~~~~~- 287 (372)
..+.+||+.+++|+.+. + +|. .+....++. .+++||++++....+ ....++| +++.+..
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~-~-------~p~~~~~~~a~v~---~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAG-E-------SPFLGTAGSAVVI---KGNKLWLINGEIKPG-LRTDAVKQGKFTGNNLK 251 (376)
T ss_pred hcCcCceEEEEECCCCeeeECC-c-------CCCCCCCcceEEE---ECCEEEEEeeeECCC-cCChhheEEEecCCCcc
Confidence 35899999999999864 4 554 444455553 799999999854221 2334444 5555544
Q ss_pred EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEC
Q 017381 288 WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWL 345 (372)
Q Consensus 288 W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~v 345 (372)
|+++..||..... .... ......++..+++||+.++.. ..+.+||+++++|+.+
T Consensus 252 W~~~~~~p~~~~~-~~~~---~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 252 WQKLPDLPPAPGG-SSQE---GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred eeecCCCCCCCcC-CcCC---ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 9999888753210 0000 001122345678888887521 1256899999999999
Q ss_pred CCCCCCCCCC
Q 017381 346 PSCPSLPHKW 355 (372)
Q Consensus 346 ~~~~~~~~~~ 355 (372)
+.+|.++...
T Consensus 328 ~~lp~~r~~~ 337 (376)
T PRK14131 328 GELPQGLAYG 337 (376)
T ss_pred CcCCCCccce
Confidence 9888776543
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.70 E-value=2e-15 Score=145.76 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=132.5
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC--CceEEEEeccccceeccCCCCCCCCceeEEEEeCC
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS--SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~--~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~ 154 (372)
....||+..++|..++. ++.++.....++.+|.|++.++. ...+..|||.+++|..+|+++.++...+.+....
T Consensus 288 ~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g- 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN- 363 (480)
T ss_pred eEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECC-
Confidence 35679999999998862 22334344566788988777653 2468899999999999999987765444333222
Q ss_pred CCEEEEEEeecCC-CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccC
Q 017381 155 SGYKIFMLFAKSF-PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPN 233 (372)
Q Consensus 155 ~~ykvv~~~~~~~-~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~ 233 (372)
+|+++||... ...+++||+++++|+..+ .++. .+..+.++.++|++|++++. ..+||+.+++|+.+.
T Consensus 364 ---~IYviGG~~~~~~~ve~ydp~~~~W~~~~--~m~~----~r~~~~~~~~~~~IYv~GG~---~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 364 ---VIYVIGGHSETDTTTEYLLPNHDQWQFGP--STYY----PHYKSCALVFGRRLFLVGRN---AEFYCESSNTWTLID 431 (480)
T ss_pred ---EEEEecCcCCCCccEEEEeCCCCEEEeCC--CCCC----ccccceEEEECCEEEEECCc---eEEecCCCCcEeEcC
Confidence 8999998643 357899999999999988 5654 12345677899999999853 678999999999874
Q ss_pred CCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEE
Q 017381 234 DANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIE 290 (372)
Q Consensus 234 ~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~ 290 (372)
| +|..+....+++ .+|+||++||.........+++| |+..+ |+.
T Consensus 432 -~-------m~~~r~~~~~~v---~~~~IYviGG~~~~~~~~~ve~Y--d~~~~~W~~ 476 (480)
T PHA02790 432 -D-------PIYPRDNPELII---VDNKLLLIGGFYRGSYIDTIEVY--NNRTYSWNI 476 (480)
T ss_pred -C-------CCCCccccEEEE---ECCEEEEECCcCCCcccceEEEE--ECCCCeEEe
Confidence 5 666555566664 89999999985422222445555 55554 974
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.68 E-value=1.5e-14 Score=133.12 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=130.2
Q ss_pred eEEEEe-cccc-ceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCc----cccccCCCCcc
Q 017381 122 SFLVCN-LVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSW----SKFDIDGFPSM 192 (372)
Q Consensus 122 ~~~v~N-P~t~-~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W----~~~~~~~~p~~ 192 (372)
.+++++ +..+ +|..+++++.++.....+... -+|+++|+... ...++.||..+++| +..+ ++|.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~----~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~- 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE----NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPF- 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEEC----CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCc-
Confidence 466664 4433 799999888766543322221 27888887542 24889999999998 4454 4543
Q ss_pred ccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEE
Q 017381 193 ILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 193 ~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~ 266 (372)
.+..+.+++++|++|.+++. ...+.+||+.+++|+.+. + +|. .+..+.+++ .+++||+++
T Consensus 113 ---~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iYv~G 178 (323)
T TIGR03548 113 ---TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-D-------FPGEPRVQPVCVK---LQNELYVFG 178 (323)
T ss_pred ---CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-C-------CCCCCCCcceEEE---ECCEEEEEc
Confidence 22346678899999999863 246899999999999864 3 443 333444443 899999999
Q ss_pred eeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------
Q 017381 267 GVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---------------- 329 (372)
Q Consensus 267 ~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------- 329 (372)
+... ....+++.+|...+ |+++..++....... ......++..+++||+.++..
T Consensus 179 G~~~---~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 249 (323)
T TIGR03548 179 GGSN---IAYTDGYKYSPKKNQWQKVADPTTDSEPIS------LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD 249 (323)
T ss_pred CCCC---ccccceEEEecCCCeeEECCCCCCCCCcee------ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence 8531 12235677777665 998876532100000 001122334567888876432
Q ss_pred ---------------------CeEEEEECCCCceEECCCCCCCC
Q 017381 330 ---------------------PEILYYNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 330 ---------------------~~v~~yd~~~~~w~~v~~~~~~~ 352 (372)
+.+.+||+.+++|+.++.+|..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 293 (323)
T TIGR03548 250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA 293 (323)
T ss_pred hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccc
Confidence 46999999999999999777433
No 14
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.66 E-value=1.2e-14 Score=132.10 Aligned_cols=289 Identities=15% Similarity=0.131 Sum_probs=152.3
Q ss_pred hhcCCCHHHHHHHHccCC-chhhhHHhhchhhhhhcccChhhhccccccCCCCceEEEEeC-CCCCCccccccCCCC---
Q 017381 12 IWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSH-PQCYDQYPLYDSTHG--- 86 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp-~~~l~r~r~Vck~W~~~i~~~~F~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~--- 86 (372)
.|++||+||+..|..||| ..++.|+|+|||+||+.+.... +. ...++.|+.+...- +... ....+....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILFNPINPSET--LTDDRSYISRPG 76 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccccccCcccCCCC--cccccccccccc
Confidence 599999999999999997 8899999999999999876311 00 00111122221110 0000 000111000
Q ss_pred ------CeeeecCCCCCCCCCceEEEEecCcEEEEecC--CCceEEEEeccccceeccCCCCCCC--------Cce-eE-
Q 017381 87 ------TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP--SSSSFLVCNLVTLSSRTIDFPTYPF--------DFE-LL- 148 (372)
Q Consensus 87 ------~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~--~~~~~~v~NP~t~~~~~lP~~~~~~--------~~~-~~- 148 (372)
...+++.+ -++..|+|..... ..+++.+.||+++.-...|+..... ... .+
T Consensus 77 ~~ls~~~~~r~~~~-----------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 77 AFLSRAAFFRVTLS-----------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ceeeeeEEEEeecC-----------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 01111110 0245675554332 3468889999999977766521110 000 00
Q ss_pred EEE-----------------eCCC--CEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEE
Q 017381 149 TLV-----------------STPS--GYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSL 209 (372)
Q Consensus 149 ~~~-----------------~~~~--~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~ 209 (372)
+.. ..++ .|-|++++.. .....++ .+.|+.++ ... ......++++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~---g~l~~w~--~~~Wt~l~--~~~------~~~~DIi~~kGkf 212 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD---GKINYWD--GNVLKALK--QMG------YHFSDIIVHKGQT 212 (373)
T ss_pred ecccccccccceeEEEEEEeecCCCcceEEEEEeec---CcEeeec--CCeeeEcc--CCC------ceeeEEEEECCEE
Confidence 000 0001 1222222211 1222232 57888886 322 2356789999999
Q ss_pred EEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC------------ccceE
Q 017381 210 YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG------------ISTTM 277 (372)
Q Consensus 210 y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~------------~~~~i 277 (372)
|.+.... .+.++|..-+ -..+..+- ..++..........+| | +.|+|++|....... ....+
T Consensus 213 YAvD~~G-~l~~i~~~l~-i~~v~~~i-~~~~~~g~~~~~~yLV-E--s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f 286 (373)
T PLN03215 213 YALDSIG-IVYWINSDLE-FSRFGTSL-DENITDGCWTGDRRFV-E--CCGELYIVERLPKESTWKRKADGFEYSRTVGF 286 (373)
T ss_pred EEEcCCC-eEEEEecCCc-eeeeccee-cccccCCcccCceeEE-E--ECCEEEEEEEEccCcccccccccccccceeEE
Confidence 9996543 3666663311 11111110 0000001111235688 6 899999998743110 12468
Q ss_pred EEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-------eeCCEEEEEeecCCeEEEEECCCCceEEC
Q 017381 278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-------WHQGMICVCCYTWPEILYYNVARRTWHWL 345 (372)
Q Consensus 278 ~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~v~~yd~~~~~w~~v 345 (372)
+||++|.... |+++.+++.... |++. ....++ ..+|.||+..+ ....+||++.++-..+
T Consensus 287 ~VfklD~~~~~WveV~sLgd~aL--FlG~-----~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 287 KVYKFDDELAKWMEVKTLGDNAF--VMAT-----DTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI 353 (373)
T ss_pred EEEEEcCCCCcEEEecccCCeEE--EEEC-----CccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence 9999987755 999999986531 1111 001111 24689999874 3456999999985543
No 15
>PLN02153 epithiospecifier protein
Probab=99.66 E-value=3.1e-14 Score=132.07 Aligned_cols=202 Identities=11% Similarity=0.102 Sum_probs=130.4
Q ss_pred ccccccCCCCCeeeecCCCCCCCC-CceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCC-----CCCCCc
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP-----TYPFDF 145 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~-----~~~~~~ 145 (372)
.+..||+..++|..++.....+.. ...+.+++.++.|++.++. .+.+++|||.+++|..++++ |.++..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 467799999999987532111211 1234456667766665542 24789999999999999876 333333
Q ss_pred eeEEEEeCCCCEEEEEEeecCC---------CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-
Q 017381 146 ELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE- 215 (372)
Q Consensus 146 ~~~~~~~~~~~ykvv~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~- 215 (372)
+.++... -+|+++|+... ...+++||+++++|+.++ .+.. ....+..+..+.++|++|.+++.
T Consensus 131 ~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~--~~~~-~~~~r~~~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 131 HSMASDE----NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP--DPGE-NFEKRGGAGFAVVQGKIWVVYGFA 203 (341)
T ss_pred eEEEEEC----CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC--CCCC-CCCCCCcceEEEECCeEEEEeccc
Confidence 3322222 27999988531 137899999999999887 3321 11123445577899999998642
Q ss_pred ------------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC-------Cccce
Q 017381 216 ------------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-------GISTT 276 (372)
Q Consensus 216 ------------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~-------~~~~~ 276 (372)
...+.+||+.+++|+.+...+. +|..+..+..++ .+++||++++.... .....
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-----~P~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-----KPSARSVFAHAV---VGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred cccccCCccceecCceEEEEcCCCcEEeccccCC-----CCCCcceeeeEE---ECCEEEEECcccCCcccccccccccc
Confidence 1358999999999998742111 455444445553 79999999995211 01112
Q ss_pred EEEEEEcCCCC-EEEEEe
Q 017381 277 MKLWELGCGGN-WIEVER 293 (372)
Q Consensus 277 i~vw~l~~~~~-W~~v~~ 293 (372)
-++|.+|..++ |+++..
T Consensus 276 n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 276 NEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccEEEEEcCccEEEeccC
Confidence 37899988766 998864
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.61 E-value=5.3e-14 Score=138.51 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=136.1
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCCCCCCCceeEEEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLV 151 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~ 151 (372)
.+..||+..++|..++ .++.++..+.+++.+|-|++.++. .+.+.+|||.+++|..+++++.++.....+..
T Consensus 312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 4567999999998775 223334444566678866665542 24688999999999999998877655444332
Q ss_pred eCCCCEEEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC--------cEE
Q 017381 152 STPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------FSI 219 (372)
Q Consensus 152 ~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~--------~~i 219 (372)
. -+|+++||... ...+++||+.+++|+..+ .+|. .+..+.++.++|++|.+++.. ..+
T Consensus 389 ~----~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 389 N----NLIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PLPI----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred C----CEEEEECCcCCCCcccceEEEEeCCCCeeeecC--CCCc----cccCceEEEECCEEEEECCccCCCCCcccceE
Confidence 2 28999988432 258999999999999988 6664 223456788999999998631 248
Q ss_pred EEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecCh
Q 017381 220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPE 296 (372)
Q Consensus 220 ~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~ 296 (372)
.+||+.+++|+.+. + +|..+....+++ .+|+||++||....... -.|+.+|..++ |+.+..+|.
T Consensus 459 ~~yd~~~~~W~~~~-~-------~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~--~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 459 ESYNPVTNKWTELS-S-------LNFPRINASLCI---FNNKIYVVGGDKYEYYI--NEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEecCCCCceeeCC-C-------CCcccccceEEE---ECCEEEEEcCCcCCccc--ceeEEEeCCCCEEEecCCCcc
Confidence 99999999999874 3 454444445553 79999999985422212 24666676665 998887663
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.58 E-value=6.1e-13 Score=123.76 Aligned_cols=219 Identities=13% Similarity=0.155 Sum_probs=136.5
Q ss_pred CccccccC--CCCCeeeec-CCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCC
Q 017381 76 DQYPLYDS--THGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTY 141 (372)
Q Consensus 76 ~~~~~~d~--~~~~w~~l~-~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~ 141 (372)
..+..||+ ..++|..++ +|. ..+....+++.+|-|++.++. ...++.|||.+++|..++.+ .
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~---~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPG---GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-S 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCC---CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-C
Confidence 34556664 567899875 331 133444567778877776542 13688999999999999842 2
Q ss_pred CCCceeEEEEeCCCCEEEEEEeecCC-------------------------------------CceEEEEECCCCCcccc
Q 017381 142 PFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKF 184 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~ykvv~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~ 184 (372)
++.+.+.+... ...-+|+++|+... ...+++||+.+++|+.+
T Consensus 105 p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 105 PVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred CCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 33222221110 01228999988531 15799999999999999
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCC------cEEEEEec--CCCeeeccCCCCccccccCCCcc-------cc
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFDL--ENGIWETPNDANDHMTMMLPHEL-------TF 249 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~~i~~yD~--~~~~w~~i~~p~~~~~~~~p~~~-------~~ 249 (372)
+ .+|.. .+..+..+.++|+||++++.. ..+..||+ .+++|+.+. + +|..+ ..
T Consensus 184 ~--~~p~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~-------m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 184 G--ENPFL---GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-P-------LPPPKSSSQEGLAG 250 (346)
T ss_pred c--cCCCC---cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-C-------CCCCCCCccccccE
Confidence 8 66531 123455678899999998631 23455654 667998764 4 44321 12
Q ss_pred cceeeeccCCCeEEEEEeeecCC-----------------ccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCce
Q 017381 250 FRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH 312 (372)
Q Consensus 250 ~~lv~e~~~~g~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~ 312 (372)
+..++ .+|+||++++..... ....+++|..+ .++|+.+..||... ..
T Consensus 251 ~~a~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~~------------~~ 314 (346)
T TIGR03547 251 AFAGI---SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD-NGKWSKVGKLPQGL------------AY 314 (346)
T ss_pred EeeeE---ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec-CCcccccCCCCCCc------------ee
Confidence 22443 799999999853110 01257788764 34599998887432 11
Q ss_pred EEEEeeCCEEEEEeec
Q 017381 313 VYCFWHQGMICVCCYT 328 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~ 328 (372)
..++..+|+||+.++.
T Consensus 315 ~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 315 GVSVSWNNGVLLIGGE 330 (346)
T ss_pred eEEEEcCCEEEEEecc
Confidence 3345678899998854
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.57 E-value=1.5e-12 Score=122.19 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=146.0
Q ss_pred ccccccCC--CCCeeeec-CCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCCC
Q 017381 77 QYPLYDST--HGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYP 142 (372)
Q Consensus 77 ~~~~~d~~--~~~w~~l~-~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~~ 142 (372)
.+..||.. .+.|..++ +|. ..+....+++.+|-|++.++. .+.+++|||.+++|..++++ .+
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~---~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p 126 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPG---GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SP 126 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCC---CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CC
Confidence 35567765 46898775 331 123344566778877776542 13688999999999999853 12
Q ss_pred CCceeEEEEeCCCCEEEEEEeecCC-------------------------------------CceEEEEECCCCCccccc
Q 017381 143 FDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 143 ~~~~~~~~~~~~~~ykvv~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~~ 185 (372)
+...+.+.... .+-+|+++||... ...+++||+.+++|+...
T Consensus 127 ~~~~~~~~~~~-~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 127 VGLAGHVAVSL-HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG 205 (376)
T ss_pred CcccceEEEEe-eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC
Confidence 22222221110 1128999988531 247999999999999987
Q ss_pred cCCCCccccccCCCcccEEECCEEEEeeeCC------c--EEEEEecCCCeeeccCCCCccccccCCCccc--------c
Q 017381 186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------F--SIVRFDLENGIWETPNDANDHMTMMLPHELT--------F 249 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~--~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~--------~ 249 (372)
.+|. +.+..+..+.++++||++++.. . ....||+++++|..+. + +|..+. .
T Consensus 206 --~~p~---~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~-------~p~~~~~~~~~~~~~ 272 (376)
T PRK14131 206 --ESPF---LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-D-------LPPAPGGSSQEGVAG 272 (376)
T ss_pred --cCCC---CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-C-------CCCCCcCCcCCccce
Confidence 5653 1123455678899999998631 1 2345677889999864 4 443221 1
Q ss_pred cceeeeccCCCeEEEEEeeecCCc-----------------cceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCce
Q 017381 250 FRLVNDGEESNKLYLIGGVGRNGI-----------------STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH 312 (372)
Q Consensus 250 ~~lv~e~~~~g~L~vv~~~~~~~~-----------------~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~ 312 (372)
...+ . .+|+||++++...... ...+++|..+ .++|+++..||... ..
T Consensus 273 ~~a~-~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~r------------~~ 336 (376)
T PRK14131 273 AFAG-Y--SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV-NGKWQKVGELPQGL------------AY 336 (376)
T ss_pred Eece-e--ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec-CCcccccCcCCCCc------------cc
Confidence 1123 2 7999999998531100 0134566553 34599988887542 11
Q ss_pred EEEEeeCCEEEEEeecC------CeEEEEECCCCceEE
Q 017381 313 VYCFWHQGMICVCCYTW------PEILYYNVARRTWHW 344 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~ 344 (372)
..++..++.||+.++.. ..|.+|+++++++..
T Consensus 337 ~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 337 GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 33566788899988632 258999999988764
No 19
>PLN02193 nitrile-specifier protein
Probab=99.52 E-value=2.2e-12 Score=124.42 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=133.6
Q ss_pred ccccccCCCCCeeeecCCCCCCCC-CceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCC---CCCCCcee
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP---TYPFDFEL 147 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~---~~~~~~~~ 147 (372)
.+..||+..++|..++.....|.. ...+.+++.++.|++.++. .+.+++|||.+++|..++++ |.++..+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 467799999999976532122221 2233456677877666542 25789999999999999877 33443333
Q ss_pred EEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC----CcEEE
Q 017381 148 LTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE----PFSIV 220 (372)
Q Consensus 148 ~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~----~~~i~ 220 (372)
++... -+|+++++... ...+++||+.+++|+.+. . +......+..+..+.++|++|++++. ...+.
T Consensus 274 ~~~~~----~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~-~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~ 346 (470)
T PLN02193 274 MAADE----ENVYVFGGVSATARLKTLDSYNIVDKKWFHCS--T-PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVH 346 (470)
T ss_pred EEEEC----CEEEEECCCCCCCCcceEEEEECCCCEEEeCC--C-CCCCCCCCCCcEEEEECCcEEEEECCCCCccCceE
Confidence 33222 28999988542 347899999999999876 2 11011123445677889999998763 24699
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC-------ccceEEEEEEcCCCC-EEEEE
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-------ISTTMKLWELGCGGN-WIEVE 292 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~-------~~~~i~vw~l~~~~~-W~~v~ 292 (372)
+||+.+++|+.+...++ .|..+..+..++ .+++||++++..... ....-++|.+|..+. |+++.
T Consensus 347 ~yD~~t~~W~~~~~~g~-----~P~~R~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 347 YYDPVQDKWTQVETFGV-----RPSERSVFASAA---VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred EEECCCCEEEEeccCCC-----CCCCcceeEEEE---ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 99999999998742111 344444445553 799999999853210 011236899988776 99887
Q ss_pred ecC
Q 017381 293 RVP 295 (372)
Q Consensus 293 ~lp 295 (372)
.++
T Consensus 419 ~~~ 421 (470)
T PLN02193 419 KFG 421 (470)
T ss_pred cCC
Confidence 664
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.51 E-value=2.1e-12 Score=118.92 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=129.5
Q ss_pred CeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccce----eccCCCCCCCCceeEEEEeCCCCE
Q 017381 87 TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSS----RTIDFPTYPFDFELLTLVSTPSGY 157 (372)
Q Consensus 87 ~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~----~~lP~~~~~~~~~~~~~~~~~~~y 157 (372)
+|..++ ++|.++.....++.++-|++.++. .+.++.+|+.+++| ..+|++|.++.....+... -
T Consensus 52 ~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~----~ 124 (323)
T TIGR03548 52 KWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD----G 124 (323)
T ss_pred eEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC----C
Confidence 687764 222333333344556655554432 24788999999997 7788887766544443332 2
Q ss_pred EEEEEeecC---CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC----cEEEEEecCCCeee
Q 017381 158 KIFMLFAKS---FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----FSIVRFDLENGIWE 230 (372)
Q Consensus 158 kvv~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----~~i~~yD~~~~~w~ 230 (372)
+|+++++.. ....+++||+.+++|+.++ .+|.. .+..+..+.++|++|.+++.. ..+.+||+.+++|+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELP--DFPGE---PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECC--CCCCC---CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 899998853 2358999999999999987 56531 123445678999999998642 24689999999999
Q ss_pred ccCCCCccccccCCCccc-ccceeeeccCCCeEEEEEeeecCCc------------------------------cceEEE
Q 017381 231 TPNDANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNGI------------------------------STTMKL 279 (372)
Q Consensus 231 ~i~~p~~~~~~~~p~~~~-~~~lv~e~~~~g~L~vv~~~~~~~~------------------------------~~~i~v 279 (372)
.+.... . .-.|.... ...++. .+++||++++...... ...-.+
T Consensus 200 ~~~~~~-~--~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (323)
T TIGR03548 200 KVADPT-T--DSEPISLLGAASIKI---NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI 273 (323)
T ss_pred ECCCCC-C--CCCceeccceeEEEE---CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE
Confidence 874210 0 00233222 223332 6899999998532100 001135
Q ss_pred EEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee
Q 017381 280 WELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327 (372)
Q Consensus 280 w~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (372)
+.+|...+ |+.+..+|... ......+..++.||+.++
T Consensus 274 ~~yd~~~~~W~~~~~~p~~~-----------r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 274 LIYNVRTGKWKSIGNSPFFA-----------RCGAALLLTGNNIFSING 311 (323)
T ss_pred EEEECCCCeeeEcccccccc-----------cCchheEEECCEEEEEec
Confidence 55666655 99988775321 112334566788998875
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.28 E-value=2.9e-10 Score=96.33 Aligned_cols=229 Identities=12% Similarity=0.149 Sum_probs=141.1
Q ss_pred cccccCCCCCeeeecCC---------CC-CCCCCceEEEEecCcEEEEecC-C-----CceEEEEeccccceeccCCCC-
Q 017381 78 YPLYDSTHGTWRRLSLP---------YS-LLLPSAATLLSSSKGLLCFSLP-S-----SSSFLVCNLVTLSSRTIDFPT- 140 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~---------~~-~~~~~~~~~~~s~~Gll~~~~~-~-----~~~~~v~NP~t~~~~~lP~~~- 140 (372)
+.+++...-+|.+++.. .+ .|..+..+.+..-.+-+++=++ . -+.++.|||.|.+|.+.---.
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~ 125 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF 125 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence 34455555678776531 11 1222333444455554444332 1 246888999999998753211
Q ss_pred CCCCceeEEEEeCCCCEEEEEEeecC-----CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC
Q 017381 141 YPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE 215 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~ykvv~~~~~~-----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~ 215 (372)
.+-.+.+...+.-++ ..+++|+.. .+..++++|..+-+|+.+...+.|+ .+ +..+.++.++|.+|..+++
T Consensus 126 vPgaRDGHsAcV~gn--~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp-rw--RDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 126 VPGARDGHSACVWGN--QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP-RW--RDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred cCCccCCceeeEECc--EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc-hh--hhhhhhhhccceEEEeccc
Confidence 111111111111111 455666643 2458999999999999997556665 22 3567888999999999863
Q ss_pred C--------------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEE
Q 017381 216 P--------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWE 281 (372)
Q Consensus 216 ~--------------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~ 281 (372)
. ..|+++|++|+.|.... + +.+.|.++..+...+ ++|++|++++....-....-++|.
T Consensus 201 ~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p-~----~~~~P~GRRSHS~fv---Yng~~Y~FGGYng~ln~HfndLy~ 272 (392)
T KOG4693|consen 201 SDESGPFHSIHEQYCDTIMALDLATGAWTRTP-E----NTMKPGGRRSHSTFV---YNGKMYMFGGYNGTLNVHFNDLYC 272 (392)
T ss_pred cccCCCccchhhhhcceeEEEeccccccccCC-C----CCcCCCcccccceEE---EcceEEEecccchhhhhhhcceee
Confidence 1 46999999999998742 1 122688877777775 899999999864322234568999
Q ss_pred EcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec
Q 017381 282 LGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (372)
Q Consensus 282 l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (372)
+|+.+. |.+|..-....+ ++...-++..++++|+.++.
T Consensus 273 FdP~t~~W~~I~~~Gk~P~---------aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 273 FDPKTSMWSVISVRGKYPS---------ARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccccchheeeeccCCCCC---------cccceeEEEECCEEEEecCC
Confidence 998877 999864332211 11122244567888888753
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.08 E-value=5e-09 Score=88.93 Aligned_cols=210 Identities=13% Similarity=0.196 Sum_probs=133.3
Q ss_pred ceEEEEeccccceeccCCCC------C-----CCCceeEEEEeCCCCEEEEEEeecCCC----ceEEEEECCCCCccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPT------Y-----PFDFELLTLVSTPSGYKIFMLFAKSFP----NYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~------~-----~~~~~~~~~~~~~~~ykvv~~~~~~~~----~~~~vy~s~~~~W~~~~ 185 (372)
-.+.++|..+-+|.++||-- . ++.+.+...+. -.-|+++.|+.+.+ +..+.||++++.|+...
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~--y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE--YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE--EcceEEEEcCccCcccccceeeeeccccccccccc
Confidence 47899999999999999831 1 12233333221 12278888876542 37789999999999876
Q ss_pred cCC-CCccccccCCCcccEEECCEEEEeeeC-------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeecc
Q 017381 186 IDG-FPSMILSQSSHQEGVFYKGSLYFTTPE-------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE 257 (372)
Q Consensus 186 ~~~-~p~~~~~~~~~~~~v~~~G~~y~~~~~-------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~ 257 (372)
++. +|. .+..+++++.++.+|..++- ...+-++|+.|.+|+.+..-++ -|+.+..+..++
T Consensus 122 v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~-----PprwRDFH~a~~--- 189 (392)
T KOG4693|consen 122 VEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD-----PPRWRDFHTASV--- 189 (392)
T ss_pred eeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC-----Cchhhhhhhhhh---
Confidence 422 222 34567888899999998762 1347899999999999864431 244455555443
Q ss_pred CCCeEEEEEeeecCCc-------cceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC
Q 017381 258 ESNKLYLIGGVGRNGI-------STTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW 329 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~-------~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 329 (372)
.+|..|++++..+... ...-.|-.+|..+. |++-..-+... ..+..-..++-++++|+.+++.
T Consensus 190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---------~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---------GGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---------CcccccceEEEcceEEEecccc
Confidence 7999999999754211 11223444444444 98653221100 1122233445577788887532
Q ss_pred -------CeEEEEECCCCceEECC---CCCCCCC
Q 017381 330 -------PEILYYNVARRTWHWLP---SCPSLPH 353 (372)
Q Consensus 330 -------~~v~~yd~~~~~w~~v~---~~~~~~~ 353 (372)
+.+.+||+++..|.++. +.|.++.
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR 294 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR 294 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCCCCccc
Confidence 35899999999999974 5555554
No 23
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.95 E-value=1.8e-08 Score=79.64 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=62.6
Q ss_pred cEEECCEEEEeeeC----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceE
Q 017381 202 GVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (372)
Q Consensus 202 ~v~~~G~~y~~~~~----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i 277 (372)
|+++||.+||++.. ...|++||+++|+|+.+..|.+ .........|+ + ++|+|+++..... .....+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~-----~~~~~~~~~L~-~--~~G~L~~v~~~~~-~~~~~~ 71 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPED-----PYSSDCSSTLI-E--YKGKLALVSYNDQ-GEPDSI 71 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeee-----eccccCccEEE-E--eCCeEEEEEecCC-CCcceE
Confidence 57899999999864 5689999999999999874300 01222346788 5 9999999876431 113579
Q ss_pred EEEEEcCCCC--EEEEEe-cChH
Q 017381 278 KLWELGCGGN--WIEVER-VPEM 297 (372)
Q Consensus 278 ~vw~l~~~~~--W~~v~~-lp~~ 297 (372)
++|.|++.++ |++... +|..
T Consensus 72 ~iWvLeD~~k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKKHIVLPPS 94 (129)
T ss_pred EEEEeeccccceEEEEEEECChH
Confidence 9999986654 999866 4443
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.92 E-value=9.2e-08 Score=86.10 Aligned_cols=202 Identities=11% Similarity=0.172 Sum_probs=129.8
Q ss_pred ceEEEEeccccceeccCC--CCCCCCceeEEEEeCCCCEEEEEEeecCC---------CceEEEEECCCCCccccccCCC
Q 017381 121 SSFLVCNLVTLSSRTIDF--PTYPFDFELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~--~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
+.++.||-.+.+|+.+-. .|.+++.+.+...+. + .+..+||.-. -..+++|+..+++|..+...+-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s-~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS-N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEecc-C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 478999999999998844 344454443333332 2 4556665321 1288999999999999863222
Q ss_pred CccccccCCCcccEEECCEEEEeee--C--C-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCC
Q 017381 190 PSMILSQSSHQEGVFYKGSLYFTTP--E--P-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 190 p~~~~~~~~~~~~v~~~G~~y~~~~--~--~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
| . .+..+..|+....+...++ + + .-+.+||+.+-+|+.+.+++. -|..+..+++.+. -+|
T Consensus 175 P---S-~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-----~PtpRSGcq~~vt--pqg 243 (521)
T KOG1230|consen 175 P---S-PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-----GPTPRSGCQFSVT--PQG 243 (521)
T ss_pred C---C-CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-----CCCCCCcceEEec--CCC
Confidence 2 2 2346778888887777764 1 1 348999999999999875531 3666666676652 499
Q ss_pred eEEEEEeeec-------CCccceEEEEEEcCCC----C--EEEEEecChHHHHHhhhhccCCCceEE-EEeeCCEEEEEe
Q 017381 261 KLYLIGGVGR-------NGISTTMKLWELGCGG----N--WIEVERVPEMMCRKFMSVCYHNYDHVY-CFWHQGMICVCC 326 (372)
Q Consensus 261 ~L~vv~~~~~-------~~~~~~i~vw~l~~~~----~--W~~v~~lp~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 326 (372)
.++|-++... ..+..+-+.|.|+++. . |+++......+. .+..+. +++.+++-++.+
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs---------pRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS---------PRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC---------CCCceeEEEecCCceEEec
Confidence 9999998642 1234467899998764 2 888865532221 122233 345555555554
Q ss_pred ecC--------------CeEEEEECCCCceEEC
Q 017381 327 YTW--------------PEILYYNVARRTWHWL 345 (372)
Q Consensus 327 ~~~--------------~~v~~yd~~~~~w~~v 345 (372)
+.. +.++.||+..++|.+.
T Consensus 315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 321 2479999999999774
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.86 E-value=1.4e-09 Score=69.36 Aligned_cols=39 Identities=31% Similarity=0.638 Sum_probs=34.7
Q ss_pred hcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChh
Q 017381 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (372)
Q Consensus 13 ~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~ 51 (372)
|..||+|++.+||+.||..++.+++.|||+|+.++.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~ 39 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNS 39 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChh
Confidence 578999999999999999999999999999999998763
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.86 E-value=2e-07 Score=90.05 Aligned_cols=205 Identities=18% Similarity=0.150 Sum_probs=132.0
Q ss_pred cccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCCC------ceEEEEeccccceeccCCCCC-CCCceeEEE
Q 017381 78 YPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTY-PFDFELLTL 150 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~ 150 (372)
++++|.....|.....-...|.....+.+++.+..|++.++.. +.+..+|+.|++|..+.+... +..+.+++.
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~ 169 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA 169 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence 5667877777765532222233344445555555555444422 389999999999999977543 333333333
Q ss_pred EeCCCCEEEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC------cEEE
Q 017381 151 VSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIV 220 (372)
Q Consensus 151 ~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~~i~ 220 (372)
...+. +++++||... ...+++||.++.+|..+....-.+ . .+..+..+.++++++.+++.. ..+.
T Consensus 170 ~~~g~--~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 170 TVVGT--KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--S-PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred EEECC--EEEEECCccCcccceeeeeeeccccccceecccCCCCC--C-CCCCceEEEECCeEEEEeccccCCceecceE
Confidence 22222 8888888642 359999999999999886311111 1 245677888899998887532 3489
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+|+.+.+|..+...++ .|..+..+.++. .+..++++++.........-++|.|+.... |.++....
T Consensus 245 ~ldl~~~~W~~~~~~g~-----~p~~R~~h~~~~---~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTGGD-----LPSPRSGHSLTV---SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eeecccceeeeccccCC-----CCCCcceeeeEE---ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 99999999985431122 566666666663 788899998854321113457888876655 99998776
No 27
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.78 E-value=1.3e-06 Score=84.59 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=133.1
Q ss_pred eEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecCC----CceEEEEECCCCCcccccc-CCCCccccc
Q 017381 122 SFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDI-DGFPSMILS 195 (372)
Q Consensus 122 ~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~-~~~p~~~~~ 195 (372)
.++++|-.+..|...+.-. .+..+.++.++... -+++.+|+... ...++.||..+++|+.... .+.|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~---- 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP---- 162 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC----
Confidence 4999999999998876542 22233333332222 27888887542 2389999999999998863 12122
Q ss_pred cCCCcccEEECCEEEEeeeC------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee
Q 017381 196 QSSHQEGVFYKGSLYFTTPE------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG 269 (372)
Q Consensus 196 ~~~~~~~v~~~G~~y~~~~~------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~ 269 (372)
.+..+.++.++.++|+.++. ...+.+||+++.+|..+...+. .|..+..+.+++ .+++++++++..
T Consensus 163 ~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~-----~P~pR~gH~~~~---~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 163 PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE-----APSPRYGHAMVV---VGNKLLVFGGGD 234 (482)
T ss_pred CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC-----CCCCCCCceEEE---ECCeEEEEeccc
Confidence 34567788888899998763 1358999999999998765542 466566666764 799999998854
Q ss_pred cCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-------CCeEEEEECCCCc
Q 017381 270 RNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-------WPEILYYNVARRT 341 (372)
Q Consensus 270 ~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~v~~yd~~~~~ 341 (372)
......-++|.||-.+. |.++...+... ........+..++.+++.+.. ...+..||++++.
T Consensus 235 -~~~~~l~D~~~ldl~~~~W~~~~~~g~~p---------~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~ 304 (482)
T KOG0379|consen 235 -DGDVYLNDVHILDLSTWEWKLLPTGGDLP---------SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV 304 (482)
T ss_pred -cCCceecceEeeecccceeeeccccCCCC---------CCcceeeeEEECCEEEEEcCCcccccccccccccccccccc
Confidence 12234457888876665 98654432111 011112222445556665532 2347999999999
Q ss_pred eEECCCCC
Q 017381 342 WHWLPSCP 349 (372)
Q Consensus 342 w~~v~~~~ 349 (372)
|.++....
T Consensus 305 w~~~~~~~ 312 (482)
T KOG0379|consen 305 WSKVESVG 312 (482)
T ss_pred eeeeeccc
Confidence 99987665
No 28
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.76 E-value=2.2e-07 Score=76.58 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=78.1
Q ss_pred cEEECCEEEEeeeCC-----cEEEEEecCCCee-eccCCCCccccccCCCccc----ccceeeeccCCCeEEEEEeeecC
Q 017381 202 GVFYKGSLYFTTPEP-----FSIVRFDLENGIW-ETPNDANDHMTMMLPHELT----FFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 202 ~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~~~~----~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+|++||.+||++... ..|++||+.+|++ ..+. +|.... ...|.+. .+++|+++...
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---------lP~~~~~~~~~~~L~~v--~~~~L~~~~~~--- 66 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---------LPFCNDDDDDSVSLSVV--RGDCLCVLYQC--- 66 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---------CCCccCccCCEEEEEEe--cCCEEEEEEec---
Confidence 589999999998632 1699999999999 6655 444322 2344211 57899998652
Q ss_pred CccceEEEEEEcCCC----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-C-----CeEEEEECCCCc
Q 017381 272 GISTTMKLWELGCGG----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-W-----PEILYYNVARRT 341 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----~~v~~yd~~~~~ 341 (372)
.....++||.+++.+ +|++..+++.......... + ......+..++++.+.... . ..+.+|+ +++.
T Consensus 67 ~~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~-~--~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~ 142 (164)
T PF07734_consen 67 DETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFH-F--RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGK 142 (164)
T ss_pred cCCccEEEEEEeeeccCcceEEEEEEEecCCCCCcccc-c--ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCE
Confidence 223469999998532 3999988864432211100 0 0111223444555554322 1 3478888 7777
Q ss_pred eEECCC
Q 017381 342 WHWLPS 347 (372)
Q Consensus 342 w~~v~~ 347 (372)
.+++.-
T Consensus 143 ~~~~~~ 148 (164)
T PF07734_consen 143 FIEVDI 148 (164)
T ss_pred EEEccc
Confidence 877763
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.73 E-value=3.4e-09 Score=68.07 Aligned_cols=44 Identities=41% Similarity=0.660 Sum_probs=37.2
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhcc
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK 55 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~~ 55 (372)
.|..||+|++.+||.+|+..++.+++.|||+|++++.++.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 47889999999999999999999999999999999998876543
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.69 E-value=9.6e-07 Score=79.69 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=105.1
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEEEC-CEEEEeeeCC-----------cEEEEEecCCCeeeccCCCC
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYK-GSLYFTTPEP-----------FSIVRFDLENGIWETPNDAN 236 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~-G~~y~~~~~~-----------~~i~~yD~~~~~w~~i~~p~ 236 (372)
..++.|+.++++|+.+.+-+.| .+ +..+.+|++- |.+|..+++- .-+..||..+++|+.+..+|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P---~p-Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAP---PP-RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCc---CC-CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 3788999999999988742222 22 3456666664 7777776531 24899999999999987665
Q ss_pred ccccccCCCcccccceeeeccCCCeEEEEEeeecCC--ccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceE
Q 017381 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHV 313 (372)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~--~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~ 313 (372)
-|..+..++||+ +..+|.++++..+.. ....-+||.++-++ +|+++.. +.. ...- +....
T Consensus 174 ------~PS~RSGHRMva---wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga-~Ptp------RSGcq 236 (521)
T KOG1230|consen 174 ------GPSPRSGHRMVA---WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA-GPTP------RSGCQ 236 (521)
T ss_pred ------CCCCCccceeEE---eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-CCCC------CCcce
Confidence 688888899996 999999999976532 22345778777655 4999865 221 0000 11223
Q ss_pred EEEeeCCEEEEEeecCC--------------eEEEEECCCC-----ceEECCCCCCCCCC
Q 017381 314 YCFWHQGMICVCCYTWP--------------EILYYNVARR-----TWHWLPSCPSLPHK 354 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~~--------------~v~~yd~~~~-----~w~~v~~~~~~~~~ 354 (372)
..+.-+|.|++.++++. ..+..+++++ +|.++...-+.|+.
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 33343555777764321 2577777773 56666544444433
No 31
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.66 E-value=1.9e-08 Score=62.12 Aligned_cols=38 Identities=45% Similarity=0.802 Sum_probs=35.6
Q ss_pred CCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhh
Q 017381 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFL 53 (372)
Q Consensus 16 LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~ 53 (372)
||+|++.+|+.+|+..++.++++|||+|+.++.++.|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999887664
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.26 E-value=5.9e-05 Score=66.77 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=37.3
Q ss_pred hhcCCC----HHHHHHHHccCCchhhhHHhhchhhhhhcccChhh
Q 017381 12 IWSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (372)
Q Consensus 12 ~~~~LP----~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F 52 (372)
-+..|| +++.+.||+.|...+|+.+..|||+|+++++++..
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 356799 99999999999999999999999999999998744
No 33
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.71 E-value=0.0017 Score=60.74 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=109.2
Q ss_pred ceEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecC--CCceEEEEECCCC--CccccccCCCCc-ccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQ--SWSKFDIDGFPS-MIL 194 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~--~~~~~~vy~s~~~--~W~~~~~~~~p~-~~~ 194 (372)
+++.|||-.|+||-.-.... .+....++|++..+. ||+++|++- ....=+.|..... .|+.+.. ..|. +..
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt--rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp-~~p~nG~p 133 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT--RILVFGGMVEYGKYSNDLYELQASRWEWKRLKP-KTPKNGPP 133 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcceEecCc--eEEEEccEeeeccccchHHHhhhhhhhHhhcCC-CCCCCCCC
Confidence 37899999999997543222 233445667765544 899999853 2223345655544 4676652 1121 111
Q ss_pred c-cCCCcccEEECCEEEEeeeC------C--------cEEEEEecC--CC--eeeccCCCCccccccCCCcccccceeee
Q 017381 195 S-QSSHQEGVFYKGSLYFTTPE------P--------FSIVRFDLE--NG--IWETPNDANDHMTMMLPHELTFFRLVND 255 (372)
Q Consensus 195 ~-~~~~~~~v~~~G~~y~~~~~------~--------~~i~~yD~~--~~--~w~~i~~p~~~~~~~~p~~~~~~~lv~e 255 (372)
+ .+..+....++.+.|.+++- . ..+...++. .. .|.....-| .+|..++.+..|..
T Consensus 134 PCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~G-----v~P~pRESHTAViY 208 (830)
T KOG4152|consen 134 PCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYG-----VLPPPRESHTAVIY 208 (830)
T ss_pred CCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccC-----CCCCCcccceeEEE
Confidence 1 23456677888999998751 0 112333332 22 455421111 04555554433321
Q ss_pred ccCCC---eEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee----
Q 017381 256 GEESN---KLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY---- 327 (372)
Q Consensus 256 ~~~~g---~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 327 (372)
.+.|. ++++.++.. ...-=++|.||-++. |.+...-..... .+........||+.|+.++
T Consensus 209 ~eKDs~~skmvvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~Pl---------PRSLHsa~~IGnKMyvfGGWVPl 276 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPL---------PRSLHSATTIGNKMYVFGGWVPL 276 (830)
T ss_pred EeccCCcceEEEEcccc---cccccceeEEecceeecccccccCCCCC---------CcccccceeecceeEEecceeee
Confidence 01343 477777643 233448999988776 998642110000 0011122234565666542
Q ss_pred ---------------cCCeEEEEECCCCceEECC
Q 017381 328 ---------------TWPEILYYNVARRTWHWLP 346 (372)
Q Consensus 328 ---------------~~~~v~~yd~~~~~w~~v~ 346 (372)
-...+.++|+.+..|+.+-
T Consensus 277 ~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 277 VMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred eccccccccccceeeeccceeeeeecchheeeee
Confidence 0134789999999998753
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0029 Score=56.84 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred ceEEEEecc--ccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCC--------CceEEEEECCCCCccccccCCC
Q 017381 121 SSFLVCNLV--TLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSF--------PNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 121 ~~~~v~NP~--t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
..+++.|.. .+.|..+...|-. +.....++... +++++++... -..++.||+.+++|..+.. ..
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~----kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~s 132 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG----KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RS 132 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCC----eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc-cc
Confidence 455665553 3569998876543 33322222222 7777776431 1378999999999998873 33
Q ss_pred CccccccCCCcccEEECC-EEEEeeeC---------------------------------------CcEEEEEecCCCee
Q 017381 190 PSMILSQSSHQEGVFYKG-SLYFTTPE---------------------------------------PFSIVRFDLENGIW 229 (372)
Q Consensus 190 p~~~~~~~~~~~~v~~~G-~~y~~~~~---------------------------------------~~~i~~yD~~~~~w 229 (372)
|.+ .....++.+++ .+|+.++- ...+++||+.+++|
T Consensus 133 P~g----l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W 208 (381)
T COG3055 133 PTG----LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQW 208 (381)
T ss_pred ccc----cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchh
Confidence 432 23445666676 88888641 02489999999999
Q ss_pred eccCCCCccccccCCCcccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEcC--CCC-EEEEEecChHH
Q 017381 230 ETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC--GGN-WIEVERVPEMM 298 (372)
Q Consensus 230 ~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~--~~~-W~~v~~lp~~~ 298 (372)
+..- . .|-...+ ..++. -+++|.+|.+.... ..++-++++.+- +.. |.+...+|...
T Consensus 209 ~~~G-~-------~pf~~~aGsa~~~---~~n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 209 RNLG-E-------NPFYGNAGSAVVI---KGNKLTLINGEIKP-GLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred hhcC-c-------CcccCccCcceee---cCCeEEEEcceecC-CccccceeEEEeccCceeeeeccCCCCCC
Confidence 9863 1 2322222 23442 57889999874432 234445555443 333 99998887654
No 35
>PF13964 Kelch_6: Kelch motif
Probab=97.47 E-value=0.00041 Score=44.55 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=31.2
Q ss_pred EEEeeCCEEEEEeecC------CeEEEEECCCCceEECCCCCCCC
Q 017381 314 YCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~v~~~~~~~ 352 (372)
.++..++.||+.++.. +.+.+||+++++|+.++++|.++
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4556788899987542 45899999999999999888653
No 36
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.0064 Score=54.68 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=97.6
Q ss_pred eEEEEECCC--CCccccccCCCCccccccCCCcccEEECCEEEEeeeCC----------cEEEEEecCCCeeeccCCCCc
Q 017381 170 YAFVYDSTD--QSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------FSIVRFDLENGIWETPNDAND 237 (372)
Q Consensus 170 ~~~vy~s~~--~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----------~~i~~yD~~~~~w~~i~~p~~ 237 (372)
..+.-|.+. ..|+..+ ..|-. .+.....++++|++|+.++-+ ..+..||+.+++|..+...
T Consensus 59 afy~ldL~~~~k~W~~~a--~FpG~---~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-- 131 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIA--DFPGG---ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-- 131 (381)
T ss_pred cceehhhhcCCCCceEcc--cCCCc---ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--
Confidence 445556654 5699998 66642 122345789999999987521 3478899999999987644
Q ss_pred cccccCCCcccccceeeeccCCC-eEEEEEeeecCC--------------------------------ccceEEEEEEcC
Q 017381 238 HMTMMLPHELTFFRLVNDGEESN-KLYLIGGVGRNG--------------------------------ISTTMKLWELGC 284 (372)
Q Consensus 238 ~~~~~~p~~~~~~~lv~e~~~~g-~L~vv~~~~~~~--------------------------------~~~~i~vw~l~~ 284 (372)
.|.+......+. .++ ++++.+++..+. .-..-+||.+++
T Consensus 132 -----sP~gl~G~~~~~---~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p 203 (381)
T COG3055 132 -----SPTGLVGASTFS---LNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDP 203 (381)
T ss_pred -----cccccccceeEe---cCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccc
Confidence 677755444442 566 899998864210 001224566666
Q ss_pred CCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEe-ec-----CCeEEEEECCCC--ceEECCCCCCCCCCC
Q 017381 285 GGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCC-YT-----WPEILYYNVARR--TWHWLPSCPSLPHKW 355 (372)
Q Consensus 285 ~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~v~~yd~~~~--~w~~v~~~~~~~~~~ 355 (372)
.++ |......| |.. .....++..+|.+.+.. .. ..++..+|...+ +|.+++.+|-+....
T Consensus 204 ~~n~W~~~G~~p------f~~-----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 204 STNQWRNLGENP------FYG-----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred ccchhhhcCcCc------ccC-----ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 555 77555543 111 11233445677554443 32 124677777754 899998888776654
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00028 Score=61.94 Aligned_cols=40 Identities=38% Similarity=0.627 Sum_probs=36.7
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChh
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~ 51 (372)
.|-.||||++..|++.|+.++|.++..|||+|.++.++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999999999999999877643
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.07 E-value=0.0013 Score=41.51 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEEeeCCEEEEEeecC------CeEEEEECCCCceEECCCCC
Q 017381 313 VYCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++..++.||+.++.. ..+.+||+++++|+.++++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 55677899999998642 24899999999999998775
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.99 E-value=0.13 Score=50.46 Aligned_cols=45 Identities=36% Similarity=0.533 Sum_probs=39.4
Q ss_pred hhhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhc
Q 017381 10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS 54 (372)
Q Consensus 10 ~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~ 54 (372)
+.-++.||.++...||..|+.++++++++||+.|+.++.+.....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 446788999999999999999999999999999999987655444
No 40
>PF13964 Kelch_6: Kelch motif
Probab=96.84 E-value=0.0031 Score=40.35 Aligned_cols=38 Identities=11% Similarity=-0.138 Sum_probs=28.3
Q ss_pred EEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCC
Q 017381 106 LSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPF 143 (372)
Q Consensus 106 ~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~ 143 (372)
+++.+|-|++.++. .+.+++|||.|++|..+|+++.++
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 45566655555442 358999999999999999987653
No 41
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.71 E-value=0.16 Score=48.01 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred CEEEEEEeecCCC--ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------------------
Q 017381 156 GYKIFMLFAKSFP--NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------------------ 215 (372)
Q Consensus 156 ~ykvv~~~~~~~~--~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------------------ 215 (372)
.-|.|+.|++... ...+..|..+-+|.....+.+++ +++ .-+.++..++++|..++-
T Consensus 215 ~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~P--lPR-SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 215 KSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAP--LPR-SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK 291 (830)
T ss_pred cceEEEEcccccccccceeEEecceeecccccccCCCC--CCc-ccccceeecceeEEecceeeeeccccccccccceee
Confidence 3466666665432 36778888899998876545543 442 346788999999998751
Q ss_pred -CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC-----CccceEEEEEEcC
Q 017381 216 -PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-----GISTTMKLWELGC 284 (372)
Q Consensus 216 -~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~-----~~~~~i~vw~l~~ 284 (372)
...+-++++++..|..+.....+.+. .|+.+..++.++ .+.+||+-.++... ...-+-++|-||.
T Consensus 292 CTssl~clNldt~~W~tl~~d~~ed~t-iPR~RAGHCAvA---igtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 292 CTSSLACLNLDTMAWETLLMDTLEDNT-IPRARAGHCAVA---IGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eccceeeeeecchheeeeeeccccccc-cccccccceeEE---eccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 13578889999999886433111111 677777666675 79999998875421 1112346777764
No 42
>smart00612 Kelch Kelch domain.
Probab=96.40 E-value=0.0075 Score=37.62 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=29.4
Q ss_pred EEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECC
Q 017381 158 KIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKG 207 (372)
Q Consensus 158 kvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G 207 (372)
+|+++||... ...+++||+++++|+..+ ++|. .+..+..+.++|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~~~----~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP--SMPT----PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC--CCCC----ccccceEEEeCC
Confidence 3677776532 358999999999999988 6664 223444555554
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.40 E-value=0.02 Score=35.86 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+++||++||... .....-.++.+|...+ |+++..||
T Consensus 10 ~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 10 VGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp ETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred ECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 8999999999764 2334556777777666 99999886
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.24 E-value=0.008 Score=38.26 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=28.7
Q ss_pred CCCeEEEEEee-ecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 258 ESNKLYLIGGV-GRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 258 ~~g~L~vv~~~-~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+++|||+++. .........++|.+|..+. |+++..+|
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 89999999997 2223445678888888776 99887664
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.23 E-value=0.019 Score=36.51 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred EEEEeeCCEEEEEeec--------CCeEEEEECCCCceEECCCCC
Q 017381 313 VYCFWHQGMICVCCYT--------WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~--------~~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++..+++||+.+.. .+.+.+||+++++|+.++.+|
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4566778889998755 134899999999999988654
No 46
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.17 E-value=0.0023 Score=56.47 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=38.4
Q ss_pred hcCCCHHHHHHHHccC-----CchhhhHHhhchhhhhhcccChhhhccc
Q 017381 13 WSRLPEDLLDHVLSFL-----PPKMLLKLRSTCKHFNSLLFSPSFLSKT 56 (372)
Q Consensus 13 ~~~LP~dll~~IL~rL-----p~~~l~r~r~Vck~W~~~i~~~~F~~~~ 56 (372)
++.||+|++.+||.++ ++.+|.++.+|||.|.....+|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 4689999999999987 3699999999999999999998876553
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.15 E-value=0.014 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=19.9
Q ss_pred eeCCEEEEEeec------CCeEEEEECCCCceEECCCCC
Q 017381 317 WHQGMICVCCYT------WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 317 ~~~~~i~~~~~~------~~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++.||+.++. .+.+.+||+++++|++++++|
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 345677777642 235899999999999997776
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=96.02 E-value=0.016 Score=36.78 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=21.6
Q ss_pred CeEEEEECCCCceEECCCCCCCCCCC
Q 017381 330 PEILYYNVARRTWHWLPSCPSLPHKW 355 (372)
Q Consensus 330 ~~v~~yd~~~~~w~~v~~~~~~~~~~ 355 (372)
+.+.+||+++++|++++..|.++.-+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h 44 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGH 44 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccce
Confidence 45899999999999998888776543
No 49
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.81 E-value=1.2 Score=39.09 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=106.3
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
...+|-+++.....+.++.+||.+++...+.... ..++++... +-++++... ....++|..+++++.+.
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~--~g~l~v~~~----~~~~~~d~~~g~~~~~~- 76 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP--DGRLYVADS----GGIAVVDPDTGKVTVLA- 76 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT--TSEEEEEET----TCEEEEETTTTEEEEEE-
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc--CCEEEEEEc----CceEEEecCCCcEEEEe-
Confidence 3345655555555678999999999876544332 234444422 235665543 34567799999998776
Q ss_pred CCCCccccccCCCcc-cEEECCEEEEeeeCC--------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeecc
Q 017381 187 DGFPSMILSQSSHQE-GVFYKGSLYFTTPEP--------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE 257 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~-~v~~~G~~y~~~~~~--------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~ 257 (372)
..+....+...... .+--+|.+|+..... ..+..+|+. .+...+... .-.|.+ +...
T Consensus 77 -~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~~pNG-----i~~s-- 142 (246)
T PF08450_consen 77 -DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LGFPNG-----IAFS-- 142 (246)
T ss_dssp -EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ESSEEE-----EEEE--
T ss_pred -eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cccccc-----eEEC--
Confidence 33210101111111 222378988765421 358888888 555443211 002332 2212
Q ss_pred CCCe-EEEEEeeecCCccceEEEEEEcCCCC-EEEEEec---ChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeE
Q 017381 258 ESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERV---PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEI 332 (372)
Q Consensus 258 ~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~l---p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 332 (372)
-+|+ ||+... ....|..+.++..+. +.....+ +... ....-.++..++.||+.....+.|
T Consensus 143 ~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 143 PDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGP----------GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp TTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----------CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred Ccchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCC----------cCCCcceEcCCCCEEEEEcCCCEE
Confidence 4665 666543 234556666654444 5543322 2110 012234555567799998888899
Q ss_pred EEEECCCCceEECC
Q 017381 333 LYYNVARRTWHWLP 346 (372)
Q Consensus 333 ~~yd~~~~~w~~v~ 346 (372)
.+||++-+....++
T Consensus 208 ~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 208 VVFDPDGKLLREIE 221 (246)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEECCCccEEEEEc
Confidence 99999955555554
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.27 E-value=0.67 Score=40.48 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=80.3
Q ss_pred eEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC---CcEEEEEecCC----CeeeccCCCCcccccc
Q 017381 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE---PFSIVRFDLEN----GIWETPNDANDHMTMM 242 (372)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~---~~~i~~yD~~~----~~w~~i~~p~~~~~~~ 242 (372)
...+||+.+++++.+. +..-.+ +....+.-||.+...++. ...+..|++.+ ..|...... +-
T Consensus 47 ~s~~yD~~tn~~rpl~---v~td~F---CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-----m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT---VQTDTF---CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-----MQ 115 (243)
T ss_pred EEEEEecCCCcEEecc---CCCCCc---ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-----cc
Confidence 4568999999999886 222011 122233447888877653 34578888865 567653211 00
Q ss_pred CCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCE
Q 017381 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGM 321 (372)
Q Consensus 243 ~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
.++-.....++ -||++++++|.. ....+.|--.... ......-+. +.. .... .....+..+.-++.
T Consensus 116 ~~RWYpT~~~L----~DG~vlIvGG~~----~~t~E~~P~~~~~~~~~~~~~l~-~~~-~~~~---~nlYP~~~llPdG~ 182 (243)
T PF07250_consen 116 SGRWYPTATTL----PDGRVLIVGGSN----NPTYEFWPPKGPGPGPVTLPFLS-QTS-DTLP---NNLYPFVHLLPDGN 182 (243)
T ss_pred CCCccccceEC----CCCCEEEEeCcC----CCcccccCCccCCCCceeeecch-hhh-ccCc---cccCceEEEcCCCC
Confidence 12211122232 589999999843 2344555221111 111111111 100 0010 12233444445566
Q ss_pred EEEEeecCCeEEEEECCCCce-EECCCCC
Q 017381 322 ICVCCYTWPEILYYNVARRTW-HWLPSCP 349 (372)
Q Consensus 322 i~~~~~~~~~v~~yd~~~~~w-~~v~~~~ 349 (372)
|++... ..-..||..++++ +.+|.+|
T Consensus 183 lFi~an--~~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 183 LFIFAN--RGSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred EEEEEc--CCcEEEeCCCCeEEeeCCCCC
Confidence 676653 3467889999987 7788777
No 51
>smart00612 Kelch Kelch domain.
Probab=95.12 E-value=0.032 Score=34.66 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.0
Q ss_pred CeEEEEECCCCceEECCCCCCCCCC
Q 017381 330 PEILYYNVARRTWHWLPSCPSLPHK 354 (372)
Q Consensus 330 ~~v~~yd~~~~~w~~v~~~~~~~~~ 354 (372)
..+.+||+++++|+.++.+|..+..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r~~ 39 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPRSG 39 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcccc
Confidence 4589999999999999988876644
No 52
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.46 E-value=0.048 Score=51.36 Aligned_cols=138 Identities=19% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCCcccEEECC--EEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee
Q 017381 197 SSHQEGVFYKG--SLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG 269 (372)
Q Consensus 197 ~~~~~~v~~~G--~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~ 269 (372)
+..++.|+..| .+|.-++-. ....+|....+.|..+..-++ .|..+.++++|. .....|||++|..-
T Consensus 261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~-----~PG~RsCHRMVi-d~S~~KLYLlG~Y~ 334 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE-----GPGARSCHRMVI-DISRRKLYLLGRYL 334 (723)
T ss_pred cCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC-----CCcchhhhhhhh-hhhHhHHhhhhhcc
Confidence 45677888888 899877521 235789999999998753322 678888888884 22566899998654
Q ss_pred cC----CccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeec--------CCeEEEE
Q 017381 270 RN----GISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYT--------WPEILYY 335 (372)
Q Consensus 270 ~~----~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--------~~~v~~y 335 (372)
+. ....+-++|++|-+++ |..+.. ..+- +-.+. ..+....++ +..+.||+.++- -..+.+|
T Consensus 335 ~sS~r~~~s~RsDfW~FDi~~~~W~~ls~-dt~~--dGGP~--~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf 409 (723)
T KOG2437|consen 335 DSSVRNSKSLRSDFWRFDIDTNTWMLLSE-DTAA--DGGPK--LVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAF 409 (723)
T ss_pred ccccccccccccceEEEecCCceeEEecc-cccc--cCCcc--eeecceeeEecCcceEEEecCeeccCCCccccceEEE
Confidence 32 2234678999998776 997632 1110 00000 011222344 455678888742 1348999
Q ss_pred ECCCCceEEC
Q 017381 336 NVARRTWHWL 345 (372)
Q Consensus 336 d~~~~~w~~v 345 (372)
|.+...|+-+
T Consensus 410 ~~~~~~w~~l 419 (723)
T KOG2437|consen 410 NCQCQTWKLL 419 (723)
T ss_pred ecCCccHHHH
Confidence 9999999754
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.63 E-value=4.3 Score=34.97 Aligned_cols=213 Identities=9% Similarity=0.053 Sum_probs=96.0
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC----cccc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS----WSKF 184 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~----W~~~ 184 (372)
.+|--|+..+.+..+.+|||..+....-=.- .....+-.+...+.-|+-..|+ +..+++||..+|+ |+..
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg---hG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG---HGHEVLDAALSSDNSKFASCGG---DKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC---CCceeeeccccccccccccCCC---CceEEEEEcccCeeeeecccc
Confidence 3454555555678899999998875431000 0000000111122224443333 4688999998874 4443
Q ss_pred ccCCCCccccccCCCcccEEECC--EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeE
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G--~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L 262 (372)
.. .-+.|.+|. .+...++-...+.++|-.+.+++.++.-.+..+-.+.-....+.+++ |..+|.+
T Consensus 101 ~a------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva-GS~DGtv 167 (307)
T KOG0316|consen 101 LA------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA-GSVDGTV 167 (307)
T ss_pred cc------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe-eccCCcE
Confidence 31 122344443 22222222456888998888877665220000000000112234442 5566665
Q ss_pred EEEEeeec----CCccceEEEEEEcCCCCEEEEEecChH----------HHHHhhhhccCCCceEEEE-eeCCEEEEEee
Q 017381 263 YLIGGVGR----NGISTTMKLWELGCGGNWIEVERVPEM----------MCRKFMSVCYHNYDHVYCF-WHQGMICVCCY 327 (372)
Q Consensus 263 ~vv~~~~~----~~~~~~i~vw~l~~~~~W~~v~~lp~~----------~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 327 (372)
-....... +.....|.--.+..+++-+.+..|... ....+.+..-.. ...-|. .+.+...+.+.
T Consensus 168 RtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred EEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecccceeEEecc
Confidence 44433211 011122333333344556665554321 222222210001 112333 44455555554
Q ss_pred cCCeEEEEECCCCc
Q 017381 328 TWPEILYYNVARRT 341 (372)
Q Consensus 328 ~~~~v~~yd~~~~~ 341 (372)
..+.|+.||+...+
T Consensus 247 EDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 247 EDGKVYFWDLVDET 260 (307)
T ss_pred CCceEEEEEeccce
Confidence 45578999988764
No 54
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.49 E-value=5 Score=35.35 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=77.7
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeee-ccCCCCccccccCC---CcccccceeeeccCCCeEEEEEeeecCCcc
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLP---HELTFFRLVNDGEESNKLYLIGGVGRNGIS 274 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p~~~~~~~~p---~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~ 274 (372)
....|+.||.+|+.......|+.||+.++.-. ....|+....-..| .+.....+.+ -+.-|.+|....+ ..
T Consensus 71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~Av---DE~GLWvIYat~~--~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAV---DENGLWVIYATED--NN 145 (250)
T ss_pred cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEE---cCCCEEEEEecCC--CC
Confidence 34467889999999887778999999988776 43333110000011 1112245554 4677999877432 22
Q ss_pred ceEEEEEEcCCC-----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC---Ce-EEEEECCCCceEEC
Q 017381 275 TTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---PE-ILYYNVARRTWHWL 345 (372)
Q Consensus 275 ~~i~vw~l~~~~-----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-v~~yd~~~~~w~~v 345 (372)
..|-|=++|+.. +|.. .++.. ....++...|.+|...... .+ -.+||+.+++-+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T--~~~k~-------------~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~- 209 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNT--SYPKR-------------SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEED- 209 (250)
T ss_pred CcEEEEeeCcccCceEEEEEe--ccCch-------------hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceec-
Confidence 347777777653 2763 22221 1123555677788776432 23 5899999987764
Q ss_pred CCCCCC
Q 017381 346 PSCPSL 351 (372)
Q Consensus 346 ~~~~~~ 351 (372)
+..++.
T Consensus 210 ~~i~f~ 215 (250)
T PF02191_consen 210 VSIPFP 215 (250)
T ss_pred eeeeec
Confidence 445553
No 55
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.11 E-value=3.7 Score=36.27 Aligned_cols=119 Identities=10% Similarity=0.157 Sum_probs=72.2
Q ss_pred EEEecCcEEEEecCCCceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
+++.-+|-+.+..-..+.+...||+++.-..+|++.. ......+..++.+ ++-.. ......++.||+.+.+|.+
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wit--twg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWIT--TWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEEe--ccCCceeeEeCccccccee
Confidence 5667777666654445678889999998777776642 1111122222211 22221 2234588999999999988
Q ss_pred cccCCCCccccccCCCcccEEEC--CEEEEeeeCCcEEEEEecCCCeeeccCCC
Q 017381 184 FDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPEPFSIVRFDLENGIWETPNDA 235 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~~--G~~y~~~~~~~~i~~yD~~~~~w~~i~~p 235 (372)
.. +|.. - ..-...+++ |.+.....+...|..||+.+.+++++..|
T Consensus 269 yp---LPgs-~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 269 YP---LPGS-K---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ee---CCCC-C---CCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 86 4431 1 122345554 45544344556799999999999987533
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.95 E-value=0.38 Score=30.37 Aligned_cols=27 Identities=19% Similarity=-0.033 Sum_probs=22.0
Q ss_pred ceEEEEeccccceeccCCCCCCCCcee
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFEL 147 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~ 147 (372)
+.++++|+.+++|.+++.+|.++..+.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~ 45 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHT 45 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceE
Confidence 579999999999999988776665443
No 57
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.77 E-value=0.25 Score=31.08 Aligned_cols=36 Identities=31% Similarity=0.726 Sum_probs=20.0
Q ss_pred CCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 259 SNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 259 ~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
+++|++++|..... ...-++|.+|..++ |+++..+|
T Consensus 12 ~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-T-EE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCC-cccCCEEEEECCCCEEEECCCCC
Confidence 68999999975422 23446788887766 99997766
No 58
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.63 E-value=4.4 Score=35.78 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=83.0
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCccc-EEECCEEEEeeeCCcEEEEEecCCCeeeccCCCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEG-VFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN 236 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~-v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~ 236 (372)
.++--.|....+.+..||..+++=.... .+|. ..+..+ +.+++++|.++........||..+- +.+. .
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~--~l~~-----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~-~- 125 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSV--PLPP-----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIG-T- 125 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEE--E-TT-----T--EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEE-E-
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEE--ECCc-----cccceeEEEECCEEEEEEecCCeEEEEccccc--eEEE-E-
Confidence 4554444455678999999998644333 3443 234444 5679999999998888999999753 2221 0
Q ss_pred ccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE
Q 017381 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF 316 (372)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~ 316 (372)
.+-..+...|.. -+..|++.+|. . .++.+|+. +.+.+.++.... . +..+...+..+++
T Consensus 126 ------~~y~~EGWGLt~---dg~~Li~SDGS------~--~L~~~dP~-~f~~~~~i~V~~--~--g~pv~~LNELE~i 183 (264)
T PF05096_consen 126 ------FPYPGEGWGLTS---DGKRLIMSDGS------S--RLYFLDPE-TFKEVRTIQVTD--N--GRPVSNLNELEYI 183 (264)
T ss_dssp ------EE-SSS--EEEE---CSSCEEEE-SS------S--EEEEE-TT-T-SEEEEEE-EE--T--TEE---EEEEEEE
T ss_pred ------EecCCcceEEEc---CCCEEEEECCc------c--ceEEECCc-ccceEEEEEEEE--C--CEECCCcEeEEEE
Confidence 112224456663 45567776652 2 45556653 233333332110 0 0011122344444
Q ss_pred eeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 317 WHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 317 ~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
++.||.--...+.|+.-|+++++-..
T Consensus 184 --~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 184 --NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred --cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 67788776667789999999986654
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.33 E-value=3.4 Score=35.74 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=71.4
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecC----CCc-eEEEEeccccceec-cCCCCCCC-CceeEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP----SSS-SFLVCNLVTLSSRT-IDFPTYPF-DFELLT 149 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~----~~~-~~~v~NP~t~~~~~-lP~~~~~~-~~~~~~ 149 (372)
.+..|+...+.|+.+..+......... -...||.++.... ... .+..||..+.++.. +|.+.... ......
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 456788888899987632111111111 2245775433221 111 68889999999994 76553221 111122
Q ss_pred EEeCCCCEEEEEEeecCCCceEEEEEC---CCCCccccccCCCCc-cccccCCCcccEEECCEEEEeeeC--CcEEEEEe
Q 017381 150 LVSTPSGYKIFMLFAKSFPNYAFVYDS---TDQSWSKFDIDGFPS-MILSQSSHQEGVFYKGSLYFTTPE--PFSIVRFD 223 (372)
Q Consensus 150 ~~~~~~~ykvv~~~~~~~~~~~~vy~s---~~~~W~~~~~~~~p~-~~~~~~~~~~~v~~~G~~y~~~~~--~~~i~~yD 223 (372)
+..-.+ ++..+........++|+-. +...|+..-..+++. ..+.......++.-+|.+...... ...++.||
T Consensus 149 L~~~~G--~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~ 226 (230)
T TIGR01640 149 LINYKG--KLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN 226 (230)
T ss_pred EEEECC--EEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence 222112 3444333222222444433 355797654112211 011111112345567888877654 33489999
Q ss_pred cCCC
Q 017381 224 LENG 227 (372)
Q Consensus 224 ~~~~ 227 (372)
+.++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 8764
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.29 E-value=4.7 Score=37.39 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=67.8
Q ss_pred ceEEEEecCc-EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCC-----c---eEE
Q 017381 102 AATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP-----N---YAF 172 (372)
Q Consensus 102 ~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~-----~---~~~ 172 (372)
...+.+..+. ++++.. .....+||+.|+....+|.+..+.... +.+. .++ +|+++...... . ..|
T Consensus 68 ~~~F~al~gskIv~~d~--~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~-VG~--~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQ--SGRTLVYDTDTRAVATGPRLHSPKRCP-ISVS-VGD--KLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred eeEEEEecCCeEEEEcC--CCCeEEEECCCCeEeccCCCCCCCcce-EEEE-eCC--eEEEeeccCccccccCccceeEE
Confidence 3444444333 444433 367999999999999999876554433 2221 122 57777653211 0 344
Q ss_pred EE--EC--------CCCCccccccCCCCccccccCC----CcccEEECCEEEEeeeCCc--EEEEEecCCCeeecc
Q 017381 173 VY--DS--------TDQSWSKFDIDGFPSMILSQSS----HQEGVFYKGSLYFTTPEPF--SIVRFDLENGIWETP 232 (372)
Q Consensus 173 vy--~s--------~~~~W~~~~~~~~p~~~~~~~~----~~~~v~~~G~~y~~~~~~~--~i~~yD~~~~~w~~i 232 (372)
++ +. +.-+|+.++ . |+....... ...-++++|.-.|+..... ...+||+.+.+|+..
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP--~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLP--P-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred EeccccccccccCCCcceEEcCC--C-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 44 41 223567765 3 431111111 1122233787777755443 689999999999875
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.24 E-value=10 Score=35.78 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=96.2
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--cccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF 184 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~~ 184 (372)
..+|.+++.. ..+.++.+|+.|++...--..+.. ...+. +. +. ++++.. ....+..+|.++++ |+..
T Consensus 118 v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~ssP~--v~---~~-~v~v~~---~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 118 VAGGKVYIGS-EKGQVYALNAEDGEVAWQTKVAGEALSRPV--VS---DG-LVLVHT---SNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EECCEEEEEc-CCCEEEEEECCCCCCcccccCCCceecCCE--EE---CC-EEEEEC---CCCEEEEEEccCCCEeeeec
Confidence 3456666544 356889999999983221111111 11111 11 11 444422 23468889988775 8776
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc---------cccccee
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE---------LTFFRLV 253 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~---------~~~~~lv 253 (372)
. ..|. ........++..+|.+|+...+ ..+.++|..+. .|+.-. . .|.. .....++
T Consensus 188 ~--~~~~--~~~~~~~sP~v~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~-~-------~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 188 L--DVPS--LTLRGESAPATAFGGAIVGGDN-GRVSAVLMEQGQLIWQQRI-S-------QPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred C--CCCc--ccccCCCCCEEECCEEEEEcCC-CEEEEEEccCChhhheecc-c-------cCCCccchhcccccCCCcEE
Confidence 5 3222 1111224567778888875544 35889998865 465311 1 1111 0122333
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEcCC-CC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP 330 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 330 (372)
.+|.||+.+.. . .++.+|.. ++ |+.- .+ ... ..+..++.||+... .+
T Consensus 255 ----~~~~vy~~~~~------g--~l~ald~~tG~~~W~~~--~~-------------~~~--~~~~~~~~vy~~~~-~g 304 (394)
T PRK11138 255 ----VGGVVYALAYN------G--NLVALDLRSGQIVWKRE--YG-------------SVN--DFAVDGGRIYLVDQ-ND 304 (394)
T ss_pred ----ECCEEEEEEcC------C--eEEEEECCCCCEEEeec--CC-------------Ccc--CcEEECCEEEEEcC-CC
Confidence 57888886541 2 34444433 33 8742 11 001 12345778888763 46
Q ss_pred eEEEEECCCCc
Q 017381 331 EILYYNVARRT 341 (372)
Q Consensus 331 ~v~~yd~~~~~ 341 (372)
.+++.|.++++
T Consensus 305 ~l~ald~~tG~ 315 (394)
T PRK11138 305 RVYALDTRGGV 315 (394)
T ss_pred eEEEEECCCCc
Confidence 89999999884
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.06 E-value=5.2 Score=37.24 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=91.3
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC---CCCccccccCCCCccccccC
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST---DQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~---~~~W~~~~~~~~p~~~~~~~ 197 (372)
..+.+||..|+.-+..=+-....+....+..+. .+++| .|+. +..+..+|.. .+.|+-+. .|.
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V-~Gs~--dr~i~~wdlDgn~~~~W~gvr---~~~------ 356 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFV-TGSP--DRTIIMWDLDGNILGNWEGVR---DPK------ 356 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeE-ecCC--CCcEEEecCCcchhhcccccc---cce------
Confidence 457778888888554422211112122222222 23333 2321 2344445553 35788775 232
Q ss_pred CCcccEEECCEEEEeeeCCcEEEEEecCCCeee-ccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccce
Q 017381 198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT 276 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~ 276 (372)
...-++..+|+-..+......|..|+..+..-. .+. .........+- -+|++.++... ...
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis---------e~~~its~~iS----~d~k~~LvnL~-----~qe 418 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS---------EEQPITSFSIS----KDGKLALVNLQ-----DQE 418 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc---------ccCceeEEEEc----CCCcEEEEEcc-----cCe
Confidence 122345567754443333345888887654333 222 11222223443 68999998762 367
Q ss_pred EEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-CeEEEEECCCCceE
Q 017381 277 MKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-PEILYYNVARRTWH 343 (372)
Q Consensus 277 i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~yd~~~~~w~ 343 (372)
+..|.+. .|.. .+++++..-+.+..-.|+|.+|.-++.++.+ .+|..||..+++.-
T Consensus 419 i~LWDl~---e~~l--------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 419 IHLWDLE---ENKL--------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred eEEeecc---hhhH--------HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 8999885 3332 2344443222233345776666455555433 46888888887654
No 63
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.00 E-value=0.34 Score=45.85 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=87.8
Q ss_pred eccccceeccCCCCCC--------CCceeEEEEeCCCCEEEEEEeecCCC---ceEEEEECCCCCccccccCC-CCcccc
Q 017381 127 NLVTLSSRTIDFPTYP--------FDFELLTLVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDG-FPSMIL 194 (372)
Q Consensus 127 NP~t~~~~~lP~~~~~--------~~~~~~~~~~~~~~ykvv~~~~~~~~---~~~~vy~s~~~~W~~~~~~~-~p~~~~ 194 (372)
-|.+-.|.++|+-... -.+.++-++-...+-.|+..||-.+. ...++|.-+.+.|....+.. .|.
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG--- 311 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPG--- 311 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCc---
Confidence 4667778888765421 12233334433334467777764432 37889999999998886311 232
Q ss_pred ccCCCcccEEECC--EEEEeee-----------CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 195 SQSSHQEGVFYKG--SLYFTTP-----------EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 195 ~~~~~~~~v~~~G--~~y~~~~-----------~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
.+..+..|.--. ++|.++. ....+..||..++.|..+....+ -.=-|...-.+++++. .-.|-
T Consensus 312 -~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~--~dGGP~~vfDHqM~Vd-~~k~~ 387 (723)
T KOG2437|consen 312 -ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA--ADGGPKLVFDHQMCVD-SEKHM 387 (723)
T ss_pred -chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc--ccCCcceeecceeeEe-cCcce
Confidence 223455555443 8888763 12358999999999988642200 0002333334566541 13455
Q ss_pred EEEEEeeecCCcc-ceEEEEEEcCCCC-EEEE
Q 017381 262 LYLIGGVGRNGIS-TTMKLWELGCGGN-WIEV 291 (372)
Q Consensus 262 L~vv~~~~~~~~~-~~i~vw~l~~~~~-W~~v 291 (372)
|||.||+.-...+ ..-.+|.++..+. |...
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 9999985422221 1224566665555 7754
No 64
>smart00284 OLF Olfactomedin-like domains.
Probab=91.99 E-value=6.3 Score=34.68 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeeecc-CCCCccc-cccCCC---cccccceeeeccCCCeEEEEEeeecCCc
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHM-TMMLPH---ELTFFRLVNDGEESNKLYLIGGVGRNGI 273 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i-~~p~~~~-~~~~p~---~~~~~~lv~e~~~~g~L~vv~~~~~~~~ 273 (372)
....|+.+|.+|+.......|+.||+.+++-... ..|+.-. +. .|- +.....+.+ -+.-|.+|..... .
T Consensus 76 GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~-~~Y~~~~~sdiDlAv---DE~GLWvIYat~~--~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNR-FPYAWGGFSDIDLAV---DENGLWVIYATEQ--N 149 (255)
T ss_pred cccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccc-cccccCCCccEEEEE---cCCceEEEEeccC--C
Confidence 3456889999999876666799999999877532 2221000 00 111 122345654 4677999977432 2
Q ss_pred cceEEEEEEcCCC-----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee-c---CCeEEEEECCCCceEE
Q 017381 274 STTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY-T---WPEILYYNVARRTWHW 344 (372)
Q Consensus 274 ~~~i~vw~l~~~~-----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~---~~~v~~yd~~~~~w~~ 344 (372)
...|-|=+||+.+ +|.. ..+.. ..-.++...|.+|+... . .....+||..+++-.
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k~-------------sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~- 213 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT--TYNKR-------------SASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEG- 213 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc--CCCcc-------------cccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccc-
Confidence 3567777777653 2764 22211 11235556777888752 1 123589999998744
Q ss_pred CCCCCCCC
Q 017381 345 LPSCPSLP 352 (372)
Q Consensus 345 v~~~~~~~ 352 (372)
-+..||+.
T Consensus 214 ~~~i~f~n 221 (255)
T smart00284 214 HLDIPFEN 221 (255)
T ss_pred eeeeeecc
Confidence 35566643
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.98 E-value=4.1 Score=37.78 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCcc-----ceEEEE
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIS-----TTMKLW 280 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~-----~~i~vw 280 (372)
+.+|..+.... ..+.||.++...... |. ++......-.+ . .+|+||++......... ..+++.
T Consensus 76 gskIv~~d~~~-~t~vyDt~t~av~~~--P~------l~~pk~~pisv-~--VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 76 GSKIVAVDQSG-RTLVYDTDTRAVATG--PR------LHSPKRCPISV-S--VGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred CCeEEEEcCCC-CeEEEECCCCeEecc--CC------CCCCCcceEEE-E--eCCeEEEeeccCccccccCccceeEEEe
Confidence 55776665443 388999998877753 21 33322233333 3 68999999875422111 156666
Q ss_pred EEcC-------CCC--EEEEEecChHHHHHhhhhccCCC-ceEEEEeeCCEEEEEeecC-CeEEEEECCCCceEECC--C
Q 017381 281 ELGC-------GGN--WIEVERVPEMMCRKFMSVCYHNY-DHVYCFWHQGMICVCCYTW-PEILYYNVARRTWHWLP--S 347 (372)
Q Consensus 281 ~l~~-------~~~--W~~v~~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~v~~yd~~~~~w~~v~--~ 347 (372)
.++. ... |.. +|...+..... +... ...+++.+|..|++..... ..-++||..+++|+++- .
T Consensus 144 ~~~~~~~~~~~~~~w~W~~---LP~PPf~~~~~--~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRS---LPPPPFVRDRR--YSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred ccccccccccCCCcceEEc---CCCCCccccCC--cccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence 5441 122 654 55443321111 0000 1123333466777755322 25799999999999985 5
Q ss_pred CCCCCC
Q 017381 348 CPSLPH 353 (372)
Q Consensus 348 ~~~~~~ 353 (372)
+||.+.
T Consensus 219 LPF~G~ 224 (342)
T PF07893_consen 219 LPFHGQ 224 (342)
T ss_pred cCcCCc
Confidence 666443
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.82 E-value=10 Score=34.74 Aligned_cols=192 Identities=10% Similarity=0.029 Sum_probs=87.7
Q ss_pred CCceEEEEeccc-cceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC-CCCccccccCCCCcccccc
Q 017381 119 SSSSFLVCNLVT-LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 119 ~~~~~~v~NP~t-~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~~~~~~ 196 (372)
.++.+.+|+..+ ++...+...+.......+++.+.+. .+++... ....+.+|+.. ++++.... ..+. ..
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~--~~~~i~~~~~~~~g~l~~~~--~~~~---~~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR--PEFRVLSYRIADDGALTFAA--ESPL---PG 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC--CCCcEEEEEECCCCceEEee--eecC---CC
Confidence 346677777653 4433333222111122344433222 3344322 23566777775 56676554 2221 11
Q ss_pred CCCcccEEE--CCE-EEEeeeCCcEEEEEecCCCe-e-eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI-W-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~~~~-w-~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
....+.+ +|+ +|........+.+||+.++. . ..+. . .+.....+.+... -+|+..++..
T Consensus 81 --~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~--p~g~~l~v~~---- 144 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I-------IEGLEGCHSANID--PDNRTLWVPC---- 144 (330)
T ss_pred --CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e-------ccCCCcccEeEeC--CCCCEEEEee----
Confidence 1123333 464 55444445678889986431 1 1111 0 1111111222112 4665444433
Q ss_pred CccceEEEEEEcCCCCEEEE----EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECC--CCceEEC
Q 017381 272 GISTTMKLWELGCGGNWIEV----ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVA--RRTWHWL 345 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~~W~~v----~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~--~~~w~~v 345 (372)
.....+.||.++..+.-... .+++.. .....+..-.++..+|+.....+.|.+||+. +++++.+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEG----------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCC----------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 13468999998753433211 111110 0011121223556788887667889999997 4565443
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.34 E-value=8.7 Score=33.02 Aligned_cols=188 Identities=14% Similarity=0.185 Sum_probs=96.5
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--ccc-cc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSK-FD 185 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~-~~ 185 (372)
.+|.+++.. ..+.++.+|+.|++...--.++.+..... .... -++++... ...+..+|..+++ |+. ..
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~----~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG----GRVYVGTS---DGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET----TEEEEEET---TSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccccccee-eecc----cccccccc---eeeeEecccCCcceeeeeccc
Confidence 667666653 35889999999998443322222211111 1111 14554442 2378888877764 984 43
Q ss_pred cCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCe--eeccCCCCccccccCCCccc--------ccceeee
Q 017381 186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLPHELT--------FFRLVND 255 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~--w~~i~~p~~~~~~~~p~~~~--------~~~lv~e 255 (372)
..+. .........++.++.+|.... ...+.++|+++.+ |.... . .|.... ...++.
T Consensus 106 --~~~~--~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-~-------~~~~~~~~~~~~~~~~~~~~- 171 (238)
T PF13360_consen 106 --SSPP--AGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV-G-------EPRGSSPISSFSDINGSPVI- 171 (238)
T ss_dssp --SSCT--CSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES-S-------TT-SS--EEEETTEEEEEEC-
T ss_pred --cccc--cccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec-C-------CCCCCcceeeecccccceEE-
Confidence 2222 111112233444666765553 4469999988664 55421 2 222111 123332
Q ss_pred ccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEE
Q 017381 256 GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY 334 (372)
Q Consensus 256 ~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 334 (372)
.+|.+++.... + ..+.+ .+..... |+.. +.. ........++.+|+.. ..+.+.+
T Consensus 172 --~~~~v~~~~~~---g--~~~~~-d~~tg~~~w~~~--~~~--------------~~~~~~~~~~~l~~~~-~~~~l~~ 226 (238)
T PF13360_consen 172 --SDGRVYVSSGD---G--RVVAV-DLATGEKLWSKP--ISG--------------IYSLPSVDGGTLYVTS-SDGRLYA 226 (238)
T ss_dssp --CTTEEEEECCT---S--SEEEE-ETTTTEEEEEEC--SS---------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred --ECCEEEEEcCC---C--eEEEE-ECCCCCEEEEec--CCC--------------ccCCceeeCCEEEEEe-CCCEEEE
Confidence 46777776541 1 12333 4432222 8422 210 0011345788888887 5688999
Q ss_pred EECCCCceEE
Q 017381 335 YNVARRTWHW 344 (372)
Q Consensus 335 yd~~~~~w~~ 344 (372)
+|+++++-.+
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999996443
No 68
>PLN02772 guanylate kinase
Probab=90.98 E-value=1.8 Score=40.57 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCcccEEECCEEEEeeeCC------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
..++++.+++++|+.++.. ..+.+||..+.+|....+-|. .|..+..+..+.. -+++|+++....
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~-----~P~~r~GhSa~v~--~~~rilv~~~~~-- 96 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT-----GPKPCKGYSAVVL--NKDRILVIKKGS-- 96 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCC-----CCCCCCcceEEEE--CCceEEEEeCCC--
Confidence 3567889999999998621 368999999999987543221 3444433322211 489999998632
Q ss_pred CccceEEEEEEcCC
Q 017381 272 GISTTMKLWELGCG 285 (372)
Q Consensus 272 ~~~~~i~vw~l~~~ 285 (372)
...-.+|-|.-+
T Consensus 97 --~~~~~~w~l~~~ 108 (398)
T PLN02772 97 --APDDSIWFLEVD 108 (398)
T ss_pred --CCccceEEEEcC
Confidence 122467777433
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.93 E-value=12 Score=32.19 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=71.4
Q ss_pred eEEEEECCCCC--ccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCC
Q 017381 170 YAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPH 245 (372)
Q Consensus 170 ~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~ 245 (372)
.+..+|..+++ |+..- . +. .. ......+.-+|.+|... ....+.++|..+. .|+.- ++.
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~-~~--~~-~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~----------~~~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--G-PG--IG-GPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFD----------LPG 66 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--S-SS--CS-SEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEE----------CSS
T ss_pred EEEEEECCCCCEEEEEEC--C-CC--CC-CccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEee----------ccc
Confidence 46677776654 76532 0 00 00 01111344778888764 4457999998765 45542 323
Q ss_pred cccccceeeeccCCCeEEEEEeeecCCccceEEEEEEc-CCCC--EEE-EEecChHHHHHhhhhccCCCceEEEEeeCCE
Q 017381 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGN--WIE-VERVPEMMCRKFMSVCYHNYDHVYCFWHQGM 321 (372)
Q Consensus 246 ~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~-~~~~--W~~-v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
......++ .++++++... .. .++.+| ..++ |+. ...-+... . .........++.
T Consensus 67 ~~~~~~~~----~~~~v~v~~~------~~--~l~~~d~~tG~~~W~~~~~~~~~~~---~-------~~~~~~~~~~~~ 124 (238)
T PF13360_consen 67 PISGAPVV----DGGRVYVGTS------DG--SLYALDAKTGKVLWSIYLTSSPPAG---V-------RSSSSPAVDGDR 124 (238)
T ss_dssp CGGSGEEE----ETTEEEEEET------TS--EEEEEETTTSCEEEEEEE-SSCTCS---T-------B--SEEEEETTE
T ss_pred cccceeee----cccccccccc------ee--eeEecccCCcceeeeeccccccccc---c-------ccccCceEecCE
Confidence 22222343 5889888763 12 566666 4455 984 43322111 0 011122234777
Q ss_pred EEEEeecCCeEEEEECCCCce
Q 017381 322 ICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 322 i~~~~~~~~~v~~yd~~~~~w 342 (372)
+++.. ..+.++++|+++++-
T Consensus 125 ~~~~~-~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 125 LYVGT-SSGKLVALDPKTGKL 144 (238)
T ss_dssp EEEEE-TCSEEEEEETTTTEE
T ss_pred EEEEe-ccCcEEEEecCCCcE
Confidence 77765 367899999999855
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.20 E-value=20 Score=32.71 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=104.2
Q ss_pred EEEecCc-EEEEecCCCceEEEEeccccc-e-eccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCC-CC
Q 017381 105 LLSSSKG-LLCFSLPSSSSFLVCNLVTLS-S-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QS 180 (372)
Q Consensus 105 ~~~s~~G-ll~~~~~~~~~~~v~NP~t~~-~-~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~-~~ 180 (372)
+..+.+| .++......+.+.+|+..+.. . ..+...+.......+++.+.+ . .+++.. .....+.+||..+ +.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~-~l~v~~--~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-R-TLWVPC--LKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-C-EEEEee--CCCCEEEEEEECCCCc
Confidence 3444455 566555446788888875321 1 111111111111233444332 2 333322 2345789999876 32
Q ss_pred cccccc--CCCCccccccCCCcccEEE-CC-EEEEeeeCCcEEEEEecC--CCeeeccCCCCccccccCCCccc---c-c
Q 017381 181 WSKFDI--DGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTMMLPHELT---F-F 250 (372)
Q Consensus 181 W~~~~~--~~~p~~~~~~~~~~~~v~~-~G-~~y~~~~~~~~i~~yD~~--~~~w~~i~~p~~~~~~~~p~~~~---~-~ 250 (372)
-..... ...+.+. .....++. +| .+|........+.+||+. +.+++.+..-. . +|.... . .
T Consensus 161 l~~~~~~~~~~~~g~----~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~----~-~p~~~~~~~~~~ 231 (330)
T PRK11028 161 LVAQEPAEVTTVEGA----GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD----M-MPADFSDTRWAA 231 (330)
T ss_pred ccccCCCceecCCCC----CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe----c-CCCcCCCCccce
Confidence 221100 0111110 11112222 44 456655546678889886 33443321000 0 232211 1 1
Q ss_pred ceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec
Q 017381 251 RLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (372)
Q Consensus 251 ~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (372)
.+... -+|+ ||+... ....+.||.++.++. ++.+..++.... ...+..-..+..+|+....
T Consensus 232 ~i~~~--pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~~----------p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 232 DIHIT--PDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTETQ----------PRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred eEEEC--CCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEecccc----------CCceEECCCCCEEEEEEcc
Confidence 12211 4666 555422 246899999977654 877777653310 1122222456688887766
Q ss_pred CCeEEEEEC--CCCceEECCCCCC
Q 017381 329 WPEILYYNV--ARRTWHWLPSCPS 350 (372)
Q Consensus 329 ~~~v~~yd~--~~~~w~~v~~~~~ 350 (372)
.+.|.+|+. +++.+..+...+.
T Consensus 295 ~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 295 SHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred CCcEEEEEEcCCCCcEEEcccccc
Confidence 677888865 5678887765554
No 71
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.84 E-value=4.2 Score=35.59 Aligned_cols=88 Identities=8% Similarity=0.035 Sum_probs=54.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC-CceEEEEECCC----CCccccccCCCCccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF-PNYAFVYDSTD----QSWSKFDIDGFPSMILS 195 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~-~~~~~vy~s~~----~~W~~~~~~~~p~~~~~ 195 (372)
..-.+|||.|++++.++.....++... ++.+. -+++.+||... ...+.+|++.+ ..|.+... .|.. +
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg-~~L~d---G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-~m~~---~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGG-AFLPD---GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-DMQS---G 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCc-CCCCC---CCEEEeCCCCccccceEEEecCCCCCCCCceECcc-cccC---C
Confidence 456889999999998875433333222 12122 27888887643 34778888765 67877651 2322 2
Q ss_pred cCCCcccEEECCEEEEeeeCC
Q 017381 196 QSSHQEGVFYKGSLYFTTPEP 216 (372)
Q Consensus 196 ~~~~~~~v~~~G~~y~~~~~~ 216 (372)
+.+....+.-||++..+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CccccceECCCCCEEEEeCcC
Confidence 223344445589999998754
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.73 E-value=0.34 Score=45.08 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=34.6
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccCh
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSP 50 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~ 50 (372)
+--.||.|++.+|++.|..+++.|++.+|+.|+.+..+.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 334699999999999999999999999999999987653
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.98 E-value=12 Score=35.53 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=90.7
Q ss_pred eccccceeccCCCCCCC---CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc-cccCCCCccccccCCCccc
Q 017381 127 NLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK-FDIDGFPSMILSQSSHQEG 202 (372)
Q Consensus 127 NP~t~~~~~lP~~~~~~---~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~p~~~~~~~~~~~~ 202 (372)
+|.++-|+....++... ....+.+.+ ...|.+++.++ ..+++|++.+.+=+. .. .+- ....+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp-~~P~d~aVt~S----~rvqly~~~~~~~~k~~s--rFk-------~~v~s 73 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSP-KHPYDFAVTSS----VRVQLYSSVTRSVRKTFS--RFK-------DVVYS 73 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCC-CCCCceEEecc----cEEEEEecchhhhhhhHH--hhc-------cceeE
Confidence 45566676664443221 122333432 34456666554 689999998753322 11 110 11112
Q ss_pred E--EECCEEEEeeeCCcEEEEEecCCCee-eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEE
Q 017381 203 V--FYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKL 279 (372)
Q Consensus 203 v--~~~G~~y~~~~~~~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~v 279 (372)
+ -.+|++...+.+...+-+||+++..- ..+.... .|-... ..- . .++.+++.+. ....+.+
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~------apv~~~--~f~-~--~d~t~l~s~s-----Dd~v~k~ 137 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ------APVHVT--KFS-P--QDNTMLVSGS-----DDKVVKY 137 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc------CceeEE--Eec-c--cCCeEEEecC-----CCceEEE
Confidence 2 23699998887766799999665211 1111000 222221 111 1 4677766654 2356788
Q ss_pred EEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCC-ceE
Q 017381 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR-TWH 343 (372)
Q Consensus 280 w~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~-~w~ 343 (372)
|.++... + ...+... .++.+ ...+....+.|++.+.+.+.|-.||.++. .|.
T Consensus 138 ~d~s~a~--v-~~~l~~h--tDYVR-------~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 138 WDLSTAY--V-QAELSGH--TDYVR-------CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred EEcCCcE--E-EEEecCC--cceeE-------eeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 8775332 3 2222110 11211 12222356678888888889999999998 443
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.23 E-value=33 Score=32.08 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--cccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF 184 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~~ 184 (372)
..++.+++.. ..+.++.+|+.|++...--..+.. ...+. +. +. ++++.. ....+..+|.++++ |+..
T Consensus 103 v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~p~--v~---~~-~v~v~~---~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 103 ADGGLVFVGT-EKGEVIALDAEDGKELWRAKLSSEVLSPPL--VA---NG-LVVVRT---NDGRLTALDAATGERLWTYS 172 (377)
T ss_pred EcCCEEEEEc-CCCEEEEEECCCCcEeeeeccCceeecCCE--EE---CC-EEEEEC---CCCeEEEEEcCCCceeeEEc
Confidence 3466666544 246888899999883321111111 00011 11 11 444432 23567888887764 8755
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc---------cccccee
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE---------LTFFRLV 253 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~---------~~~~~lv 253 (372)
. ..+. ........++..+|.+|+-.. ...+.++|+.+. .|+.-. . .|.. .....++
T Consensus 173 ~--~~~~--~~~~~~~sp~~~~~~v~~~~~-~g~v~ald~~tG~~~W~~~~-~-------~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 173 R--VTPA--LTLRGSASPVIADGGVLVGFA-GGKLVALDLQTGQPLWEQRV-A-------LPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred c--CCCc--eeecCCCCCEEECCEEEEECC-CCEEEEEEccCCCEeeeecc-c-------cCCCCCchhhhhccCCccEE
Confidence 4 2221 111123446777887765433 346899998765 465311 1 1111 1112233
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeE
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEI 332 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 332 (372)
.++.+|+.... ..+..+..+.... |..-. + .... .+..++.||+.. ..+.+
T Consensus 240 ----~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~--~-------------~~~~--p~~~~~~vyv~~-~~G~l 291 (377)
T TIGR03300 240 ----DGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA--S-------------SYQG--PAVDDNRLYVTD-ADGVV 291 (377)
T ss_pred ----ECCEEEEEEcC------CEEEEEECCCCcEEEeecc--C-------------CccC--ceEeCCEEEEEC-CCCeE
Confidence 57788876541 2344554432222 86531 0 0011 113467788865 34679
Q ss_pred EEEECCCCc--eEE
Q 017381 333 LYYNVARRT--WHW 344 (372)
Q Consensus 333 ~~yd~~~~~--w~~ 344 (372)
.++|..+++ |+.
T Consensus 292 ~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 292 VALDRRSGSELWKN 305 (377)
T ss_pred EEEECCCCcEEEcc
Confidence 999999874 543
No 75
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.53 E-value=40 Score=31.78 Aligned_cols=132 Identities=14% Similarity=0.254 Sum_probs=69.6
Q ss_pred ceEEEEECCCCC--ccccccCCCCccc--cc--cCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCcccc
Q 017381 169 NYAFVYDSTDQS--WSKFDIDGFPSMI--LS--QSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMT 240 (372)
Q Consensus 169 ~~~~vy~s~~~~--W~~~~~~~~p~~~--~~--~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~ 240 (372)
..+..++..+++ |+... ..|... .. ......++..+|.+|..+.+. .+.++|+++. .|+.-
T Consensus 215 g~v~a~d~~~G~~~W~~~~--~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~-------- 283 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRI--SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKRE-------- 283 (394)
T ss_pred CEEEEEEccCChhhheecc--ccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeec--------
Confidence 456667776654 76432 112100 00 011245778899999876543 6999999865 46642
Q ss_pred ccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC-CC--EEEEEecChHHHHHhhhhccCCCceEEEEe
Q 017381 241 MMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFW 317 (372)
Q Consensus 241 ~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
.... ..++. .+|+||+.... .. ++.++.. ++ |..-. +.... .. ... .
T Consensus 284 --~~~~---~~~~~---~~~~vy~~~~~------g~--l~ald~~tG~~~W~~~~-~~~~~-----------~~-sp~-v 333 (394)
T PRK11138 284 --YGSV---NDFAV---DGGRIYLVDQN------DR--VYALDTRGGVELWSQSD-LLHRL-----------LT-APV-L 333 (394)
T ss_pred --CCCc---cCcEE---ECCEEEEEcCC------Ce--EEEEECCCCcEEEcccc-cCCCc-----------cc-CCE-E
Confidence 2111 12332 57888887641 22 4444332 22 86321 11000 01 111 2
Q ss_pred eCCEEEEEeecCCeEEEEECCCCce
Q 017381 318 HQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 318 ~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
.++.||+.. ..+.+.+.|.++++-
T Consensus 334 ~~g~l~v~~-~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 334 YNGYLVVGD-SEGYLHWINREDGRF 357 (394)
T ss_pred ECCEEEEEe-CCCEEEEEECCCCCE
Confidence 477788765 346789999999854
No 76
>PF13854 Kelch_5: Kelch motif
Probab=83.38 E-value=2.2 Score=25.83 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 244 p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
|..+..+..+. .+++||+.+|.........-++|.++-
T Consensus 2 P~~R~~hs~~~---~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 2 PSPRYGHSAVV---VGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCccceEEEE---ECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 34444455553 789999999965211223447787764
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=42 Score=34.82 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=44.4
Q ss_pred CCCCCccccccCCCCccccccCCCcccEEECC--EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccccccee
Q 017381 176 STDQSWSKFDIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLV 253 (372)
Q Consensus 176 s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G--~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv 253 (372)
+++..|..-. +- .+....+++.+++ .+....++...|-++|+...+--.. ..+......++
T Consensus 236 netKaWEvDt---cr----gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t----------frrendRFW~l 298 (1202)
T KOG0292|consen 236 NETKAWEVDT---CR----GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT----------FRRENDRFWIL 298 (1202)
T ss_pred ccccceeehh---hh----cccCCcceEEecCccceeEecCCCccEEEEecccccceee----------eeccCCeEEEE
Confidence 3566776543 11 1122345677777 5555566777899999986543221 11111112333
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
+. --...||..++ ...+.|++++
T Consensus 299 aa-hP~lNLfAAgH------DsGm~VFkle 321 (1202)
T KOG0292|consen 299 AA-HPELNLFAAGH------DSGMIVFKLE 321 (1202)
T ss_pred Ee-cCCcceeeeec------CCceEEEEEc
Confidence 21 01366777665 2467899885
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=79.36 E-value=2.4 Score=31.94 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=29.7
Q ss_pred CCCCCCChhhhcCCCHHHHHHHHccCCchhhhHHhhchh
Q 017381 3 PKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCK 41 (372)
Q Consensus 3 ~~~~~~~~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck 41 (372)
|+++...+....+||+||+..|+..-....+...-..|+
T Consensus 12 ~kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 12 PKPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred CCCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 444444445578899999999999998877777666666
No 79
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=78.17 E-value=57 Score=30.15 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=80.4
Q ss_pred EEEEecCc-EEEEecCCCceEEEEeccccc--eeccCCCCCC--CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC-
Q 017381 104 TLLSSSKG-LLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYP--FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST- 177 (372)
Q Consensus 104 ~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~--~~~lP~~~~~--~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~- 177 (372)
.+..+-+| .++......+.+.+|+..... .........+ ..-..+.+.+.+. .++++.. ....+.+|+..
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--~~Yv~~e--~s~~v~v~~~~~ 223 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--YAYVVNE--LSNTVSVFDYDP 223 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--EEEEEET--TTTEEEEEEEET
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--EEEEecC--CCCcEEEEeecc
Confidence 34445455 555554445677777765544 3221111111 1112344544322 4556554 33455555444
Q ss_pred -CCCcccccc-CCCCccccccCCCcccEEE--CC-EEEEeeeCCcEEEEEecC--CCeeeccCCCCccccccCCCccccc
Q 017381 178 -DQSWSKFDI-DGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTMMLPHELTFF 250 (372)
Q Consensus 178 -~~~W~~~~~-~~~p~~~~~~~~~~~~v~~--~G-~~y~~~~~~~~i~~yD~~--~~~w~~i~~p~~~~~~~~p~~~~~~ 250 (372)
++.++.... ..+|. ..........+.+ +| .+|+.......|.+|++. +.+.+.+.. .|.....+
T Consensus 224 ~~g~~~~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~--------~~~~G~~P 294 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT--------VPTGGKFP 294 (345)
T ss_dssp TTTEEEEEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE--------EEESSSSE
T ss_pred cCCceeEEEEeeeccc-cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE--------EeCCCCCc
Confidence 777766652 11222 1111112223444 46 456666666789999983 345544320 22211111
Q ss_pred -ceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC-CCEEEEE
Q 017381 251 -RLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GNWIEVE 292 (372)
Q Consensus 251 -~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~ 292 (372)
.+... -+|+..++.. .....+.+|+.|.. +.++.+.
T Consensus 295 r~~~~s--~~g~~l~Va~----~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 295 RHFAFS--PDGRYLYVAN----QDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEE---TTSSEEEEEE----TTTTEEEEEEEETTTTEEEEEE
T ss_pred cEEEEe--CCCCEEEEEe----cCCCeEEEEEEeCCCCcEEEec
Confidence 12212 4777666554 23468999999854 4577765
No 80
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=77.86 E-value=13 Score=36.09 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=60.5
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCC--CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPF--DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~--~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
..+|-+++.+-++.++.||||+..+ .+-.+.... ....+-|++.+++ ++|+.+. .+..+.+||....+=+..+
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnn-riv~sgA--gDk~i~lfdl~~~~~~~~d 133 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNN-RIVLSGA--GDKLIKLFDLDSSKEGGMD 133 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCC-eEEEecc--CcceEEEEecccccccccc
Confidence 5678777777667899999999444 333332222 2233445554444 5555443 3467889987643222111
Q ss_pred cCCC--Cccccc--cCCCcccEEE-CC-EEEEeeeCCcEEEEEecCC
Q 017381 186 IDGF--PSMILS--QSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLEN 226 (372)
Q Consensus 186 ~~~~--p~~~~~--~~~~~~~v~~-~G-~~y~~~~~~~~i~~yD~~~ 226 (372)
- ++ +...+. .+.-...+.. +| ..+|.+++..++..||+.+
T Consensus 134 ~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 134 H-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred c-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 0 11 110000 0001112222 44 7888888877899999975
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.64 E-value=1.4e+02 Score=32.48 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=82.6
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC-------------CCceeEEEEeCCCCEEEEEEeecCCCceEEEE
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-------------FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVY 174 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-------------~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy 174 (372)
..+|.+++.....+.+.++|+.++....+..-... ..-.++++++.++ .+++... ....+.+|
T Consensus 692 p~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--~LYVADs--~n~~Irv~ 767 (1057)
T PLN02919 692 PVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--ELYIADS--ESSSIRAL 767 (1057)
T ss_pred cCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC--EEEEEEC--CCCeEEEE
Confidence 34676666655567899999988776543211000 0112344544322 3554432 34678899
Q ss_pred ECCCCCcccccc-CC-CCcc--ccc---------cCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccc
Q 017381 175 DSTDQSWSKFDI-DG-FPSM--ILS---------QSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239 (372)
Q Consensus 175 ~s~~~~W~~~~~-~~-~p~~--~~~---------~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~ 239 (372)
|..++.-+.... +. .+.. .+. ....-.++.+ +|.+|+.......|..||+.+.....+...+...
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 987765322110 00 0000 000 0011224443 5889888777778999999887765432111000
Q ss_pred c---ccCCCcccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 240 T---MMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 240 ~---~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
. ...+..... ..+... -+|+||+.+. ....|.+|.++.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd--~dG~lyVaDt-----~Nn~Irvid~~~ 889 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALG--ENGRLFVADT-----NNSLIRYLDLNK 889 (1057)
T ss_pred CCCCcccccccCCceEEEEe--CCCCEEEEEC-----CCCEEEEEECCC
Confidence 0 000011111 123323 5789988764 235788887754
No 82
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.79 E-value=57 Score=33.93 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=24.0
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCC--Ceeec
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLEN--GIWET 231 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~--~~w~~ 231 (372)
..+++.++|++|..+..+ .+.++|.+| +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-eEEEEECCCCcEEEEE
Confidence 356889999999876544 589999875 46764
No 83
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=71.58 E-value=99 Score=29.78 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=78.0
Q ss_pred ccccccCCCCCeeeecCCCCCC--CCC-c-------eEEEEecCc-EEEEecCCCceEEEEeccccceeccCCCCCCCCc
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLL--LPS-A-------ATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDF 145 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~--~~~-~-------~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~ 145 (372)
...+|||...+-.++.+.-++. ... . ..-.+..+| ++.+-. .++.++.||--+--.+++....
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS--RGkaFi~~~~~~~~iqv~~~~~---- 361 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS--RGKAFIMRPWDGYSIQVGKKGG---- 361 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe--cCcEEEECCCCCeeEEcCCCCc----
Confidence 4678999998888775431111 111 1 111234555 443332 4788999998888887775432
Q ss_pred eeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecC
Q 017381 146 ELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLE 225 (372)
Q Consensus 146 ~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~ 225 (372)
+-|......-+-+++ +......+.||+.+++.=+.... + + .+...-.+.-+|+...++.+...++++|+.
T Consensus 362 --VrY~r~~~~~e~~vi-gt~dgD~l~iyd~~~~e~kr~e~-~-----l-g~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 362 --VRYRRIQVDPEGDVI-GTNDGDKLGIYDKDGGEVKRIEK-D-----L-GNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --eEEEEEccCCcceEE-eccCCceEEEEecCCceEEEeeC-C-----c-cceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 222211100011122 22233578899999886555431 1 1 111222444578877777777778888888
Q ss_pred CCeeeccC
Q 017381 226 NGIWETPN 233 (372)
Q Consensus 226 ~~~w~~i~ 233 (372)
+..-+.+.
T Consensus 432 ngnv~~id 439 (668)
T COG4946 432 NGNVRLID 439 (668)
T ss_pred CCCeeEec
Confidence 87776654
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=71.33 E-value=62 Score=28.03 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (372)
+|.+||+......|..+|+.+++-..+..+ -|. .++.. ..+|+|++... ..+.++ |..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-------~~~-----G~~~~-~~~g~l~v~~~-------~~~~~~--d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-------GPN-----GMAFD-RPDGRLYVADS-------GGIAVV--DPD 68 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESS-------SEE-----EEEEE-CTTSEEEEEET-------TCEEEE--ETT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecC-------CCc-----eEEEE-ccCCEEEEEEc-------CceEEE--ecC
Confidence 589999987667899999999888765533 222 12210 03688888764 233444 433
Q ss_pred -CCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC--------CeEEEEECCCCceEEC
Q 017381 286 -GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------PEILYYNVARRTWHWL 345 (372)
Q Consensus 286 -~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~v~~yd~~~~~w~~v 345 (372)
++++.+...+.... .+. .... .++..++.+|+..... +.+..++.. ++.+.+
T Consensus 69 ~g~~~~~~~~~~~~~-~~~-----~~ND-~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 69 TGKVTVLADLPDGGV-PFN-----RPND-VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTEEEEEEEEETTCS-CTE-----EEEE-EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcEEEEeeccCCCc-ccC-----CCce-EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 34777766532100 000 0111 2334455577765321 347777777 554443
No 85
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.02 E-value=88 Score=28.14 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC-ccceEEEEEEcCCCCEEEEEecC
Q 017381 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGGNWIEVERVP 295 (372)
Q Consensus 217 ~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~-~~~~i~vw~l~~~~~W~~v~~lp 295 (372)
..+-.||+.+.+|..+... +-........+ .+.+|++.+.....+ ....+..|.++ ..+|+.+..-.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~-------i~G~V~~l~~~----~~~~Llv~G~ft~~~~~~~~la~yd~~-~~~w~~~~~~~ 83 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG-------ISGTVTDLQWA----SNNQLLVGGNFTLNGTNSSNLATYDFK-NQTWSSLGGGS 83 (281)
T ss_pred CEEEEEECCCCEeecCCCC-------ceEEEEEEEEe----cCCEEEEEEeeEECCCCceeEEEEecC-CCeeeecCCcc
Confidence 4688899999999975311 21112122222 477888887654333 45567888764 34598664411
Q ss_pred hHHHHHhhhhccCCCceEEEE-eeCCEEEEEeec-CC--eEEEEECCCCceEECCCCCCCCCCCccccccccc
Q 017381 296 EMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYT-WP--EILYYNVARRTWHWLPSCPSLPHKWSCGFSLNYL 364 (372)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~--~v~~yd~~~~~w~~v~~~~~~~~~~~~~~~~~~~ 364 (372)
.. ..-+ ....+... .+.+.+++.+.. .+ .+..| ...+|+.+..--+....---++.+.++
T Consensus 84 s~---~ipg----pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 84 SN---SIPG----PVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred cc---cCCC----cEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccccccCCCCEEEEEEEEec
Confidence 00 0000 00111111 244467766642 22 35555 667899887633322222334444444
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.68 E-value=99 Score=28.58 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=81.5
Q ss_pred CceEEEEECCCCC--ccccccCCCCccccccCCCcccEEE-CC-EEEEeeeCCcEEEEEecC--CCeeeccCCCCccccc
Q 017381 168 PNYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTM 241 (372)
Q Consensus 168 ~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~-~G-~~y~~~~~~~~i~~yD~~--~~~w~~i~~p~~~~~~ 241 (372)
...+.+|+...+. ........+|.+.- ..-.++. +| .+|+++.....|.+|+.. +.+++.+..-.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~----- 235 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS----- 235 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-----
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-----
Confidence 4578888887655 43322112222111 1112333 44 677777666678887776 55665432100
Q ss_pred cCCCcc----cccceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCC-CCEEEEEecChHHHHHhhhhccCCCceEEE
Q 017381 242 MLPHEL----TFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (372)
Q Consensus 242 ~~p~~~----~~~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~ 315 (372)
.+|... ....+... -+|+ ||+... ....|.++.+++. +.-+.+..++..- - ....+..
T Consensus 236 ~~~~~~~~~~~~~~i~is--pdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~~~~~~~~~G---~------~Pr~~~~ 299 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAIS--PDGRFLYVSNR-----GSNSISVFDLDPATGTLTLVQTVPTGG---K------FPRHFAF 299 (345)
T ss_dssp SCETTSCSSSSEEEEEE---TTSSEEEEEEC-----TTTEEEEEEECTTTTTEEEEEEEEESS---S------SEEEEEE
T ss_pred eccccccccCCceeEEEe--cCCCEEEEEec-----cCCEEEEEEEecCCCceEEEEEEeCCC---C------CccEEEE
Confidence 033221 12233322 4676 555543 3578999999755 4576666654210 0 0112222
Q ss_pred EeeCCEEEEEeecCCeEEEEE--CCCCceEECC
Q 017381 316 FWHQGMICVCCYTWPEILYYN--VARRTWHWLP 346 (372)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd--~~~~~w~~v~ 346 (372)
--.++.+++....++.|.+|+ .++++++.+.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 246778888887788888875 5688887754
No 87
>PLN02772 guanylate kinase
Probab=68.49 E-value=13 Score=34.90 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=36.4
Q ss_pred EEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccCCCcccEEE-CCEEEEee
Q 017381 158 KIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTT 213 (372)
Q Consensus 158 kvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~~y~~~ 213 (372)
|+|++|+... ...+++||..+++|.......-+| .+ +..++++.+ +++|+.+.
T Consensus 36 k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P--~~-r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 36 KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP--KP-CKGYSAVVLNKDRILVIK 93 (398)
T ss_pred EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC--CC-CCcceEEEECCceEEEEe
Confidence 8999987543 348999999999998876422222 22 245666666 57888885
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=67.50 E-value=86 Score=27.46 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 119 ~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
.++.+.+||+.|++....-.... ....+.+.+.+. .+++.+. ....+.+||..+++.... ++.+. .
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~--~l~~~~~--~~~~v~~~d~~~~~~~~~----~~~~~----~ 74 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGK--LLYVCAS--DSDTIQVIDLATGEVIGT----LPSGP----D 74 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC--CCCceEECCCCC--EEEEEEC--CCCeEEEEECCCCcEEEe----ccCCC----C
Confidence 45688889988876433211111 112234433222 3444432 345788999888765321 11100 0
Q ss_pred CcccEEE--CC-EEEEeeeCCcEEEEEecCCCe
Q 017381 199 HQEGVFY--KG-SLYFTTPEPFSIVRFDLENGI 228 (372)
Q Consensus 199 ~~~~v~~--~G-~~y~~~~~~~~i~~yD~~~~~ 228 (372)
. ..+.+ +| .+|..+.....+..||+.+.+
T Consensus 75 ~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 75 P-ELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred c-cEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 1 11222 44 455444444579999998754
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.99 E-value=1e+02 Score=28.05 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=48.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCc-cccccCCCCccccccCCC
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSW-SKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W-~~~~~~~~p~~~~~~~~~ 199 (372)
..+..||..+++-..+-++... ...+-+.+.+..|.++. ...+.+|.+++.+= +.+. .|. ..
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~------~~~i~i~q~d~A~v~~~i~---~~~------r~ 211 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSG------RNKIDIYQLDNASVFREIE---NPK------RI 211 (362)
T ss_pred ceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEe------ccEEEEEecccHhHhhhhh---ccc------cc
Confidence 4566777777775444333211 11233444444343332 25788898776432 2222 221 12
Q ss_pred cccEEECCEEEEeeeCCcEEEEEecCC
Q 017381 200 QEGVFYKGSLYFTTPEPFSIVRFDLEN 226 (372)
Q Consensus 200 ~~~v~~~G~~y~~~~~~~~i~~yD~~~ 226 (372)
.+..+.++....++.+...|..+|...
T Consensus 212 l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eeeeecCCceEEEecCCceEEEeccCC
Confidence 345667776666777777788998775
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=66.80 E-value=3.4 Score=37.53 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=33.6
Q ss_pred hhhcCCCHHHHHHHHccCC--------chhhhHHhhchhhhhhcccC
Q 017381 11 AIWSRLPEDLLDHVLSFLP--------PKMLLKLRSTCKHFNSLLFS 49 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp--------~~~l~r~r~Vck~W~~~i~~ 49 (372)
..|+.||.+++.+|+.|.. .++.+.+..||+.|+...++
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 5799999999999999994 34788899999999997653
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=66.19 E-value=2e+02 Score=31.32 Aligned_cols=224 Identities=14% Similarity=0.148 Sum_probs=105.3
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCC--------------C-CceeEEEEeCCCCEEEEEEeecCCCce
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--------------F-DFELLTLVSTPSGYKIFMLFAKSFPNY 170 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~--------------~-~~~~~~~~~~~~~ykvv~~~~~~~~~~ 170 (372)
+...++.|++.......+.++|+.++....+..-... . .-..+++++..+ .+++... ....
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~--~~~~ 706 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMA--GQHQ 706 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEEC--CCCe
Confidence 3445666777655456788899988876665421100 0 112445543222 3444321 3356
Q ss_pred EEEEECCCCCccccccCCC----Cc--cccccCCCcccEEE--CC-EEEEeeeCCcEEEEEecCCCeeeccC--CC--Cc
Q 017381 171 AFVYDSTDQSWSKFDIDGF----PS--MILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWETPN--DA--ND 237 (372)
Q Consensus 171 ~~vy~s~~~~W~~~~~~~~----p~--~~~~~~~~~~~v~~--~G-~~y~~~~~~~~i~~yD~~~~~w~~i~--~p--~~ 237 (372)
+.+|+..++..+....+.. .. ........-.++.+ +| .+|+.......|..||+.+.....+. .+ ..
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 7788877665433220000 00 00000011234444 34 48887777778999999875433211 00 00
Q ss_pred cccccCC-Cc------ccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCC
Q 017381 238 HMTMMLP-HE------LTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHN 309 (372)
Q Consensus 238 ~~~~~~p-~~------~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~ 309 (372)
.+..+-. .+ ... ..+... -+|.||+... ...+|.+|..+ .+....+......-+.+-.... ..
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd--~dG~LYVADs-----~N~rIrviD~~-tg~v~tiaG~G~~G~~dG~~~~-a~ 857 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCA--KDGQIYVADS-----YNHKIKKLDPA-TKRVTTLAGTGKAGFKDGKALK-AQ 857 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEe--CCCcEEEEEC-----CCCEEEEEECC-CCeEEEEeccCCcCCCCCcccc-cc
Confidence 0000000 00 001 122223 5788988865 24577788653 2223333221100000000000 00
Q ss_pred C-ce-EEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 310 Y-DH-VYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 310 ~-~~-~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
. .. -.++..++.+|+.....+.|.++|+++++-
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1 11 123445567899887778899999999865
No 92
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=65.39 E-value=1.2e+02 Score=28.31 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=65.7
Q ss_pred cEEECCEEEEeeeCCcEEEEEecCCCe--eeccCCCCccccccCC-CcccccceeeeccCCCeEEEEEeeecCCccceEE
Q 017381 202 GVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLP-HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK 278 (372)
Q Consensus 202 ~v~~~G~~y~~~~~~~~i~~yD~~~~~--w~~i~~p~~~~~~~~p-~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~ 278 (372)
.++.+|++|+...+. .+.++|+.+.. |+.-. .. .......++. .+|+|++-... . .
T Consensus 64 ~~~~dg~v~~~~~~G-~i~A~d~~~g~~~W~~~~---------~~~~~~~~~~~~~---~~G~i~~g~~~-------g-~ 122 (370)
T COG1520 64 PADGDGTVYVGTRDG-NIFALNPDTGLVKWSYPL---------LGAVAQLSGPILG---SDGKIYVGSWD-------G-K 122 (370)
T ss_pred cEeeCCeEEEecCCC-cEEEEeCCCCcEEecccC---------cCcceeccCceEE---eCCeEEEeccc-------c-e
Confidence 488899999875444 59999998765 87532 21 1122233342 47887775541 1 7
Q ss_pred EEEEcC-CCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 279 LWELGC-GGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 279 vw~l~~-~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
++.+|+ +++ |.....-. .. ..-..+..++.+|+.. ..+.+.+.|..+++-.+
T Consensus 123 ~y~ld~~~G~~~W~~~~~~~-------~~------~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W 177 (370)
T COG1520 123 LYALDASTGTLVWSRNVGGS-------PY------YASPPVVGDGTVYVGT-DDGHLYALNADTGTLKW 177 (370)
T ss_pred EEEEECCCCcEEEEEecCCC-------eE------EecCcEEcCcEEEEec-CCCeEEEEEccCCcEEE
Confidence 888887 455 98654330 00 1112445567777765 45778999999874433
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.90 E-value=93 Score=28.09 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
+|...+.++....+-.+|+.+++-..+... -......+.+ . ..+.-+++.+.. ..++..|++.
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H--------d~pvkt~~wv-~--~~~~~cl~TGSW----DKTlKfWD~R 145 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAH--------DAPVKTCHWV-P--GMNYQCLVTGSW----DKTLKFWDTR 145 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeec--------ccceeEEEEe-c--CCCcceeEeccc----ccceeecccC
Confidence 565555665555688999999987776411 1222333444 2 223336666643 3689999764
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=63.50 E-value=1.4e+02 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCE-EEEeeeCCcEEEEEecCCCeeeccC
Q 017381 206 KGS-LYFTTPEPFSIVRFDLENGIWETPN 233 (372)
Q Consensus 206 ~G~-~y~~~~~~~~i~~yD~~~~~w~~i~ 233 (372)
+|. ..+.++....+.+||+.+.+...+.
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred CCceEEEecccceEEEEeecccccccccc
Confidence 676 5556666678999999999888876
No 95
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.46 E-value=1.2e+02 Score=27.62 Aligned_cols=215 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC--CCceEEEEECCCCCccccccCCC
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~--~~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
.+.+......-..|+|+.+++....-..+..+.+.++|..+..+. .++...+.. ....+-|||.. +..+.+. +.
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~-~~~~ri~--E~ 94 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAA-RGYRRIG--EF 94 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECc-CCcEEEe--Ee
Confidence 455555555678899999999654333344556666655432222 566655543 23488999998 4454444 33
Q ss_pred Cc-----cccccCCC-cccEEECCEEEEeeeC----------CcEEEEEecCCCeeec-cCCCCccccccCCCc---ccc
Q 017381 190 PS-----MILSQSSH-QEGVFYKGSLYFTTPE----------PFSIVRFDLENGIWET-PNDANDHMTMMLPHE---LTF 249 (372)
Q Consensus 190 p~-----~~~~~~~~-~~~v~~~G~~y~~~~~----------~~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~---~~~ 249 (372)
+. +++-.... ..-|+-||-|.---.. +..+.-.|..+.+... .. +|.. .+.
T Consensus 95 ~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~---------Lp~~~~~lSi 165 (305)
T PF07433_consen 95 PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE---------LPPDLHQLSI 165 (305)
T ss_pred cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee---------cCccccccce
Confidence 32 22211111 1233444444322111 1234555566554322 11 3322 122
Q ss_pred cceeeeccCCCeEEEEEeeecCCcc--ceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEe
Q 017381 250 FRLVNDGEESNKLYLIGGVGRNGIS--TTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCC 326 (372)
Q Consensus 250 ~~lv~e~~~~g~L~vv~~~~~~~~~--~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 326 (372)
-.|... -+|.+++-......... .-+.++ +..+. -+...+|.+....+. .|....++ ..++.|.+.+
T Consensus 166 RHLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~--~~g~~-~~~~~~p~~~~~~l~-----~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 166 RHLAVD--GDGTVAFAMQYQGDPGDAPPLVALH--RRGGA-LRLLPAPEEQWRRLN-----GYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred eeEEec--CCCcEEEEEecCCCCCccCCeEEEE--cCCCc-ceeccCChHHHHhhC-----CceEEEEEeCCCCEEEEEC
Confidence 234432 45665554433211111 123333 33333 222355555433222 23333344 3456777877
Q ss_pred ecCCeEEEEECCCCceEECCCCC
Q 017381 327 YTWPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 327 ~~~~~v~~yd~~~~~w~~v~~~~ 349 (372)
...+.+.+||..+++|.....++
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred CCCCEEEEEECCCCCEeeccccC
Confidence 66678999999999998765444
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.26 E-value=1.5e+02 Score=28.58 Aligned_cols=129 Identities=14% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCEEEEeeeCCcEEEEEecCCC-eeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 206 KGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~-~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
++.+.+.++....|-.||++.. .|.. . +-++..--.++.. -.|.+.+..+ ...+.||++..
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~-e---------lnhg~pVe~vl~l--psgs~iasAg------Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVV-E---------LNHGCPVESVLAL--PSGSLIASAG------GNSVKVWDLTT 226 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeE-E---------ecCCCceeeEEEc--CCCCEEEEcC------CCeEEEEEecC
Confidence 4556666665567899999876 3432 1 2122111112211 3456555543 25789999864
Q ss_pred CCCEEEEEecChHHHHHhhhhccCCCceEEEE--eeCCEEEEEeecCCeEEEEECCCCceEECCCCCCCCCCCcccccc-
Q 017381 285 GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSL- 361 (372)
Q Consensus 285 ~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~~~~~~~~~~~~~- 361 (372)
.+.- +..+ .+ ....+.|. +.++.=.+.+...+.|-+|| +..|+.+....++...=+|+.+-
T Consensus 227 G~ql--l~~~----~~--------H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 227 GGQL--LTSM----FN--------HNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred Ccee--hhhh----hc--------ccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceeeEEecCC
Confidence 3321 1111 10 11223333 33333344444556789999 67788888777877777777665
Q ss_pred -ccccccC
Q 017381 362 -NYLAAGA 368 (372)
Q Consensus 362 -~~~~~~~ 368 (372)
-.+|+|-
T Consensus 291 d~t~viGm 298 (487)
T KOG0310|consen 291 DQTVVIGM 298 (487)
T ss_pred CceEEEec
Confidence 4455553
No 97
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.20 E-value=85 Score=28.22 Aligned_cols=113 Identities=14% Similarity=0.404 Sum_probs=57.4
Q ss_pred ceEEEEECCCCCccccccCCCCccccccC--CCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCc
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQS--SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE 246 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~--~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~ 246 (372)
..+.+||..+.+|..... ++.. ..... ....-+++.|.+-.-+.....+..||.++.+|+.+.... . +. +|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~-s-~~-ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS-S-NS-IPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc-c-cc-CCCc
Confidence 478899999999988873 2211 11100 012223333333322223457899999999998764310 0 00 3444
Q ss_pred ccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEe
Q 017381 247 LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVER 293 (372)
Q Consensus 247 ~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~ 293 (372)
......... -..++++.+.. ......+..| | .++|..+..
T Consensus 91 v~a~~~~~~--d~~~~~~aG~~--~~g~~~l~~~--d-Gs~W~~i~~ 130 (281)
T PF12768_consen 91 VTALTFISN--DGSNFWVAGRS--ANGSTFLMKY--D-GSSWSSIGS 130 (281)
T ss_pred EEEEEeecc--CCceEEEecee--cCCCceEEEE--c-CCceEeccc
Confidence 322222211 23456666553 1223345555 3 456988765
No 98
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=62.70 E-value=34 Score=25.92 Aligned_cols=43 Identities=7% Similarity=-0.081 Sum_probs=26.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEe
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLF 163 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~ 163 (372)
..+.++||.|+.|....+.+.....-.+-.++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEee
Confidence 5788999999997654332222222223334556778888754
No 99
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.60 E-value=1.3e+02 Score=27.93 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred ceEEEEECCCCC--ccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCC
Q 017381 169 NYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLP 244 (372)
Q Consensus 169 ~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p 244 (372)
..+..||..+|+ |+..- . . . ....++..++.+|.-+.+ ..+.++|..+. .|+.- ++
T Consensus 75 g~v~a~d~~tG~~~W~~~~--~--~-~----~~~~p~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~----------~~ 134 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDL--D--E-R----LSGGVGADGGLVFVGTEK-GEVIALDAEDGKELWRAK----------LS 134 (377)
T ss_pred CeEEEEEccCCcEeeeecC--C--C-C----cccceEEcCCEEEEEcCC-CEEEEEECCCCcEeeeec----------cC
Confidence 467788876654 86443 1 1 0 122345567788754443 46999998654 57642 22
Q ss_pred CcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEE
Q 017381 245 HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMIC 323 (372)
Q Consensus 245 ~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 323 (372)
.......++ .++++++... ...+..+..+.... |+....-+..... .....++ .++.+|
T Consensus 135 ~~~~~~p~v----~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~---------~~~sp~~-~~~~v~ 194 (377)
T TIGR03300 135 SEVLSPPLV----ANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLR---------GSASPVI-ADGGVL 194 (377)
T ss_pred ceeecCCEE----ECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeec---------CCCCCEE-ECCEEE
Confidence 221222333 4666666432 12334443322222 8743221110000 0011122 345565
Q ss_pred EEeecCCeEEEEECCCCc
Q 017381 324 VCCYTWPEILYYNVARRT 341 (372)
Q Consensus 324 ~~~~~~~~v~~yd~~~~~ 341 (372)
+.. ..+.+.++|+++++
T Consensus 195 ~~~-~~g~v~ald~~tG~ 211 (377)
T TIGR03300 195 VGF-AGGKLVALDLQTGQ 211 (377)
T ss_pred EEC-CCCEEEEEEccCCC
Confidence 543 34679999999885
No 100
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=61.80 E-value=66 Score=30.47 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=65.4
Q ss_pred eEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-CCceEEEEECCCCCccccccCCCCccccccCCCc
Q 017381 122 SFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ 200 (372)
Q Consensus 122 ~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~ 200 (372)
+++|||..|++...+..+...-. .-+.+.=|+.-+|.. .+.+..+||.....=+-..
T Consensus 254 RylVfN~~t~~V~R~Daig~acv-------~LPedqGiIFpgGYyLqtGe~K~Fd~~~~~l~F~r--------------- 311 (448)
T PF12458_consen 254 RYLVFNTRTKKVVRLDAIGQACV-------RLPEDQGIIFPGGYYLQTGEYKTFDTDMDGLEFER--------------- 311 (448)
T ss_pred eEEEEecccceEEEecchhhhhh-------cCCccCceEccCceEeccCCceeecccCCCceEEE---------------
Confidence 89999999999988876532100 001111122222211 2235556665443111111
Q ss_pred ccEEECC--EEEEeee---CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee-cCCcc
Q 017381 201 EGVFYKG--SLYFTTP---EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG-RNGIS 274 (372)
Q Consensus 201 ~~v~~~G--~~y~~~~---~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~-~~~~~ 274 (372)
....=|| .+|+.-. +...++.||+-+++... | +.+ ....+. -+|+|+++.... .....
T Consensus 312 ~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v~t---P-------i~c--hG~alf----~DG~l~~fra~~~Eptrv 375 (448)
T PF12458_consen 312 KVRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEVAT---P-------IIC--HGYALF----EDGRLVYFRAEGDEPTRV 375 (448)
T ss_pred EecCCCCceEEEEEEECCCCcEEEEechhhhhhhcC---C-------eec--cceeEe----cCCEEEEEecCCCCccee
Confidence 0111133 6776643 34578999988765543 3 333 334566 499999987631 12334
Q ss_pred ceEEEEEE
Q 017381 275 TTMKLWEL 282 (372)
Q Consensus 275 ~~i~vw~l 282 (372)
..+.||..
T Consensus 376 Hp~QiWqT 383 (448)
T PF12458_consen 376 HPMQIWQT 383 (448)
T ss_pred ccceeecC
Confidence 57899974
No 101
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=61.38 E-value=1.4e+02 Score=27.61 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=87.6
Q ss_pred CCceEEEEECCCCCccccccCCCCccccccCCCcccEEE-CC-EEEEeeeCCcEE--EEEecCCCeeeccCCCCcccccc
Q 017381 167 FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSI--VRFDLENGIWETPNDANDHMTMM 242 (372)
Q Consensus 167 ~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G-~~y~~~~~~~~i--~~yD~~~~~w~~i~~p~~~~~~~ 242 (372)
...++.+|+..++.=.....-.+++ .....-.++. || .+|.++.-..+| +.||....+++.+..- +.
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~----G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i-----~t 235 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKP----GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI-----DT 235 (346)
T ss_pred CCceEEEEEcccCccccccccccCC----CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee-----cc
Confidence 3468899999988766554212222 1112223444 45 456666644555 4455555788776422 11
Q ss_pred CCCcccc----cceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE
Q 017381 243 LPHELTF----FRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF 316 (372)
Q Consensus 243 ~p~~~~~----~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~ 316 (372)
+|.+... ..+-.. -+|+ ||+... ..+.|.++..++.+. -+.+...+.+-. ....+...
T Consensus 236 lP~dF~g~~~~aaIhis--~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~~~teg~---------~PR~F~i~ 299 (346)
T COG2706 236 LPEDFTGTNWAAAIHIS--PDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGITPTEGQ---------FPRDFNIN 299 (346)
T ss_pred CccccCCCCceeEEEEC--CCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEEeccCCc---------CCccceeC
Confidence 6665431 222212 5777 454433 346899999988765 544444432210 01223333
Q ss_pred eeCCEEEEEeecCCeEEE--EECCCCceEECCCCCCCC
Q 017381 317 WHQGMICVCCYTWPEILY--YNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 317 ~~~~~i~~~~~~~~~v~~--yd~~~~~w~~v~~~~~~~ 352 (372)
-.++.+++....++.+.+ =|.+|++..++..-...|
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p 337 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVP 337 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCC
Confidence 456677777766665544 477788998887644433
No 102
>PTZ00421 coronin; Provisional
Probab=59.93 E-value=1.8e+02 Score=28.57 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=89.1
Q ss_pred CcEEEEecCCCceEEEEeccccceec-cC-CC-CCC---CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 110 KGLLCFSLPSSSSFLVCNLVTLSSRT-ID-FP-TYP---FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~~~~-lP-~~-~~~---~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
++-+++.+..++.+.+||..++.... .. +. ... .....+.+.+... .+++.++ .+..+.+||..++.=
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs--~DgtVrIWDl~tg~~-- 160 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAG--ADMVVNVWDVERGKA-- 160 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEe--CCCEEEEEECCCCeE--
Confidence 44333333346788999976653211 00 00 001 1112233333222 2344433 345788999887642
Q ss_pred cccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeec-cCCCCccccccCCCcccccceeeeccCCC
Q 017381 184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
.. .+.. ....-..+.. +|.+.+.+.....|..||+.+.+-.. +. . .........+.. .++
T Consensus 161 ~~--~l~~----h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~-------H~~~~~~~~~w~---~~~ 223 (493)
T PTZ00421 161 VE--VIKC----HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-A-------HASAKSQRCLWA---KRK 223 (493)
T ss_pred EE--EEcC----CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-c-------CCCCcceEEEEc---CCC
Confidence 11 1110 0001112222 57666666666679999998765321 11 0 111111111221 233
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecCCeEEEEECC
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVA 338 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~ 338 (372)
.+.+..+.. ......+.+|.+..... .... .+... .......+ ..++.+++.+...+.|.+||+.
T Consensus 224 ~~ivt~G~s-~s~Dr~VklWDlr~~~~p~~~~-~~d~~-----------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 224 DLIITLGCS-KSQQRQIMLWDTRKMASPYSTV-DLDQS-----------SALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CeEEEEecC-CCCCCeEEEEeCCCCCCceeEe-ccCCC-----------CceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 333333311 12245799998753332 2211 11100 00111122 2455666665456679999999
Q ss_pred CCceEEC
Q 017381 339 RRTWHWL 345 (372)
Q Consensus 339 ~~~w~~v 345 (372)
+++....
T Consensus 291 ~~~~~~~ 297 (493)
T PTZ00421 291 NERLTFC 297 (493)
T ss_pred CCceEEE
Confidence 8876543
No 103
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.61 E-value=2.2e+02 Score=29.08 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=55.3
Q ss_pred EEEecCcEEEEecCCCceEEEEeccccceeccCCCCCCC--CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCC---
Q 017381 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPF--DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--- 179 (372)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~--~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~--- 179 (372)
+.-+.||-+++.. ..+.+.+-+..|++.. +|...... ...++++.+. .-+++.+.. ..-..+|+..++
T Consensus 25 ~~~s~nG~~L~t~-~~d~Vi~idv~t~~~~-l~s~~~ed~d~ita~~l~~d--~~~L~~a~r---s~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTA-CGDRVIIIDVATGSIA-LPSGSNEDEDEITALALTPD--EEVLVTASR---SQLLRVWSLPTGKLI 97 (775)
T ss_pred eeECCCCCEEEEe-cCceEEEEEccCCcee-cccCCccchhhhheeeecCC--ccEEEEeec---cceEEEEEcccchHh
Confidence 4456777322222 1356778888888876 55443221 2234444332 334444332 246778888776
Q ss_pred -CccccccCCCCccccccCCCcccEEEC--CEEEEeeeCCcEEEEEecCCCeeec
Q 017381 180 -SWSKFDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPEPFSIVRFDLENGIWET 231 (372)
Q Consensus 180 -~W~~~~~~~~p~~~~~~~~~~~~v~~~--G~~y~~~~~~~~i~~yD~~~~~w~~ 231 (372)
+|+..- .-|. . ...++ |.+-..++....+.+.|.+.+....
T Consensus 98 rswKa~H--e~Pv--i-------~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 98 RSWKAIH--EAPV--I-------TMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred HhHhhcc--CCCe--E-------EEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 477643 2232 0 11222 2333333434457888887665543
No 104
>PTZ00420 coronin; Provisional
Probab=58.35 E-value=2.1e+02 Score=28.76 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=91.6
Q ss_pred cEEEEecCCCceEEEEeccccce--eccCCC--CCC---CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 111 GLLCFSLPSSSSFLVCNLVTLSS--RTIDFP--TYP---FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~t~~~--~~lP~~--~~~---~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
+-+++.+..++.+.|||..++.. ..+..+ ... .....+.+.+. ...+++.++ ....+.+||.+++. .
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS--~DgtIrIWDl~tg~--~ 160 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSG--FDSFVNIWDIENEK--R 160 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEe--CCCeEEEEECCCCc--E
Confidence 43334444467899999876431 111100 001 11122333332 223443333 23578899988764 1
Q ss_pred cccCCCCccccccCCCcccEE--ECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceee-ecc-CC
Q 017381 184 FDIDGFPSMILSQSSHQEGVF--YKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVN-DGE-ES 259 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~--~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~-e~~-~~ 259 (372)
.. .+.. . ..-..+. -+|.+...+.....+..||+.+.+-... .. ...+......+. .+. .+
T Consensus 161 ~~--~i~~---~--~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l~-------gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 161 AF--QINM---P--KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-FH-------IHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred EE--EEec---C--CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-Ee-------cccCCceeEEEEeeeEcCC
Confidence 11 0100 0 0111222 2577666565556799999987643221 01 111111111110 000 24
Q ss_pred CeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEE--EEeeCCEEEEEeecCCeEEEEEC
Q 017381 260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVY--CFWHQGMICVCCYTWPEILYYNV 337 (372)
Q Consensus 260 g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~yd~ 337 (372)
+...+.++.. ......+.+|.+...+.-.....+... ...+. .....+.+|+.+.....|.+||+
T Consensus 226 ~~~IlTtG~d-~~~~R~VkLWDlr~~~~pl~~~~ld~~------------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 226 DNYILSTGFS-KNNMREMKLWDLKNTTSALVTMSIDNA------------SAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCEEEEEEcC-CCCccEEEEEECCCCCCceEEEEecCC------------ccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 4444444421 112357999988643332211122110 01111 11335677887776778999999
Q ss_pred CCCceEECC
Q 017381 338 ARRTWHWLP 346 (372)
Q Consensus 338 ~~~~w~~v~ 346 (372)
.++....+.
T Consensus 293 ~~~~~~~l~ 301 (568)
T PTZ00420 293 SLGSIRKVN 301 (568)
T ss_pred cCCcEEeec
Confidence 888666554
No 105
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=58.31 E-value=27 Score=20.45 Aligned_cols=25 Identities=8% Similarity=-0.107 Sum_probs=19.8
Q ss_pred CCEEEEEeecCCeEEEEECCCCceE
Q 017381 319 QGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 319 ~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
++.+|+.....+.|.++|+.+++..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEE
Confidence 5678888877888999999887553
No 106
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=56.97 E-value=33 Score=31.33 Aligned_cols=81 Identities=20% Similarity=0.409 Sum_probs=43.8
Q ss_pred ccEEE-CCEEEEeee-----CC--cEEEEEecC-CCeeeccCCCCccccccCCCcccccceeeeccC-CCeEEEEEeeec
Q 017381 201 EGVFY-KGSLYFTTP-----EP--FSIVRFDLE-NGIWETPNDANDHMTMMLPHELTFFRLVNDGEE-SNKLYLIGGVGR 270 (372)
Q Consensus 201 ~~v~~-~G~~y~~~~-----~~--~~i~~yD~~-~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~-~g~L~vv~~~~~ 270 (372)
++|.. ||.+.+-.. .. ..++.|-.. ...|..-..- -|.++..+.++ | + +|+|.|+..+.+
T Consensus 125 SGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~-------s~~gC~~psv~-E--We~gkLlM~~~c~~ 194 (310)
T PF13859_consen 125 SGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGM-------SPAGCSDPSVV-E--WEDGKLLMMTACDD 194 (310)
T ss_dssp E-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-----------TT-EEEEEE-E--E-TTEEEEEEE-TT
T ss_pred CceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEecccc-------CCCCcceEEEE-e--ccCCeeEEEEeccc
Confidence 45666 676665321 12 457888776 6688863211 24566667777 7 9 899999987532
Q ss_pred CCccceEEEEEEcCCCC-EEE-EEecC
Q 017381 271 NGISTTMKLWELGCGGN-WIE-VERVP 295 (372)
Q Consensus 271 ~~~~~~i~vw~l~~~~~-W~~-v~~lp 295 (372)
..-.||+-.+-++ |++ +.+++
T Consensus 195 ----g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 195 ----GRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp ----S---EEEESSTTSS-EE-TTTTT
T ss_pred ----ceEEEEEEcccceehhhccCccc
Confidence 3458998866666 998 44665
No 107
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.03 E-value=1.5e+02 Score=26.55 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=72.9
Q ss_pred EEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccc--ccceeeeccCCCeEEEEEeeecCCccceEEEE
Q 017381 203 VFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELT--FFRLVNDGEESNKLYLIGGVGRNGISTTMKLW 280 (372)
Q Consensus 203 v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~--~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw 280 (372)
+.-+|.+|+.......|.-.|+.+..-+.+. .|.... ...+.++ ..|++.+... ..-.+.
T Consensus 196 atpdGsvwyaslagnaiaridp~~~~aev~p---------~P~~~~~gsRriwsd--pig~~wittw-------g~g~l~ 257 (353)
T COG4257 196 ATPDGSVWYASLAGNAIARIDPFAGHAEVVP---------QPNALKAGSRRIWSD--PIGRAWITTW-------GTGSLH 257 (353)
T ss_pred ECCCCcEEEEeccccceEEcccccCCcceec---------CCCcccccccccccC--ccCcEEEecc-------CCceee
Confidence 3448999987665667989999887555554 344321 1223323 5677777643 122566
Q ss_pred EEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEECC
Q 017381 281 ELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLP 346 (372)
Q Consensus 281 ~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~ 346 (372)
.+|+... |.+- .+|... .......|...+.|.+.....+.|.-||+++-+++.+|
T Consensus 258 rfdPs~~sW~ey-pLPgs~----------arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 258 RFDPSVTSWIEY-PLPGSK----------ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred EeCcccccceee-eCCCCC----------CCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 6677765 8754 444211 11112344567788998777889999999999999877
No 108
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=55.85 E-value=9.9 Score=27.91 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.5
Q ss_pred hhhcCCCHHHHHHHHccCCchhhhH
Q 017381 11 AIWSRLPEDLLDHVLSFLPPKMLLK 35 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~r 35 (372)
..|..||.|+...||+.|+-.+|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999888764
No 109
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.70 E-value=1.6e+02 Score=26.96 Aligned_cols=48 Identities=23% Similarity=0.200 Sum_probs=30.9
Q ss_pred CEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEE
Q 017381 207 GSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 207 G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~ 266 (372)
+.+||.......|..||+.+.+-+... .|.......++ + .+|.|..+.
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---------~p~~~~~~~~~-d--~~g~Lv~~~ 84 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFP---------SPGGFSSGALI-D--AGGRLIACE 84 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEE---------CCCCcccceee-c--CCCeEEEEc
Confidence 468998877677999999876665544 44544444444 3 556665554
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=54.75 E-value=1.1e+02 Score=27.76 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=70.9
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEE--ECCEEEEeeeCCcEEEEEecCCCee-eccCCCCccccccCCC
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVF--YKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPH 245 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~--~~G~~y~~~~~~~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~ 245 (372)
..+.+||..+-+=-..+ + |..+.. ..-+.|- -.|.+|..++....|-.+|=.+++. ..+.. ...
T Consensus 238 p~~rlYdv~T~Qcfvsa--n-Pd~qht--~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH~ 304 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSA--N-PDDQHT--GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AHG 304 (430)
T ss_pred CceeEEeccceeEeeec--C-cccccc--cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--------hcC
Confidence 46778888775444433 2 321110 1111222 2589999887666687777544433 33321 112
Q ss_pred ccc-ccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEE
Q 017381 246 ELT-FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMIC 323 (372)
Q Consensus 246 ~~~-~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 323 (372)
+.+ +...+ . .+||..+..|. ...+.+|++.....-.+..--...-..++. .-..+ -.++.++
T Consensus 305 gsevcSa~F-t--kn~kyiLsSG~-----DS~vkLWEi~t~R~l~~YtGAg~tgrq~~r--------tqAvFNhtEdyVl 368 (430)
T KOG0640|consen 305 GSEVCSAVF-T--KNGKYILSSGK-----DSTVKLWEISTGRMLKEYTGAGTTGRQKHR--------TQAVFNHTEDYVL 368 (430)
T ss_pred CceeeeEEE-c--cCCeEEeecCC-----cceeeeeeecCCceEEEEecCCcccchhhh--------hhhhhcCccceEE
Confidence 222 33444 3 78887666552 246889998533222221111000000110 11122 2345666
Q ss_pred EEeecCCeEEEEECCCC
Q 017381 324 VCCYTWPEILYYNVARR 340 (372)
Q Consensus 324 ~~~~~~~~v~~yd~~~~ 340 (372)
+....++++.+||.++.
T Consensus 369 ~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTA 385 (430)
T ss_pred ccccccCceeeccccch
Confidence 66666778999999875
No 111
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.25 E-value=19 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=16.9
Q ss_pred cccEEECCEEEEeeeCCcEEEEEecCC
Q 017381 200 QEGVFYKGSLYFTTPEPFSIVRFDLEN 226 (372)
Q Consensus 200 ~~~v~~~G~~y~~~~~~~~i~~yD~~~ 226 (372)
..+++.+|.+|..+.+. .+.++|.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-EEEEEeCCC
Confidence 34577788999776644 599999864
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=53.40 E-value=92 Score=30.19 Aligned_cols=74 Identities=18% Similarity=0.472 Sum_probs=40.1
Q ss_pred ccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec
Q 017381 249 FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (372)
Q Consensus 249 ~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (372)
.+.|. -||+-+++++. ..++.||+|...+-=.+ ..++...- .|| ...+.-+.+++|.+..
T Consensus 470 SckL~----pdgrtLivGGe-----astlsiWDLAapTprik-aeltssap-----aCy-----ALa~spDakvcFsccs 529 (705)
T KOG0639|consen 470 SCKLL----PDGRTLIVGGE-----ASTLSIWDLAAPTPRIK-AELTSSAP-----ACY-----ALAISPDAKVCFSCCS 529 (705)
T ss_pred eeEec----CCCceEEeccc-----cceeeeeeccCCCcchh-hhcCCcch-----hhh-----hhhcCCccceeeeecc
Confidence 44555 58998888873 46899999853221111 11211000 011 1122335566776666
Q ss_pred CCeEEEEECCCCce
Q 017381 329 WPEILYYNVARRTW 342 (372)
Q Consensus 329 ~~~v~~yd~~~~~w 342 (372)
.+.|.+||+.+.+.
T Consensus 530 dGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTL 543 (705)
T ss_pred CCcEEEEEccccee
Confidence 66777777777654
No 113
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=53.02 E-value=80 Score=31.54 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=66.0
Q ss_pred CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC-CC--EEEE
Q 017381 215 EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GN--WIEV 291 (372)
Q Consensus 215 ~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~--W~~v 291 (372)
....+.+|++.+.+=.....+ -|.+....+++-. |+|++.++.+... ..+..+.+|.-..- .. -+.+
T Consensus 740 KDg~~rVy~Prs~e~pv~Eg~-------gpvgtRgARi~wa--cdgr~viv~Gfdk-~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQPVYEGK-------GPVGTRGARILWA--CDGRIVIVVGFDK-SSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred cCceEEEeCCCCCCCccccCC-------CCccCcceeEEEE--ecCcEEEEecccc-cchhhhhhhhhhhccCCcceeee
Confidence 334688899876543333323 3444444554434 9999988887542 22345666642110 01 2222
Q ss_pred Eec-ChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEECCCCCCCCCCCcccccccc
Q 017381 292 ERV-PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSLNY 363 (372)
Q Consensus 292 ~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~~~~~~~~~~~~~~~ 363 (372)
-.. |..+. ...-.+.+.+++.+.....|.+|++--.+=..+|-.+++-...++|++|-.
T Consensus 810 lDvaps~Lv-------------P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~ 869 (1012)
T KOG1445|consen 810 LDVAPSPLV-------------PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQ 869 (1012)
T ss_pred ecccCcccc-------------ccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeec
Confidence 111 10000 011124556777776666788888776655555655555445567776643
No 114
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=51.73 E-value=1.4e+02 Score=26.72 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccC-CCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMML-PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~-p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
|..-.+.++...+|..+|+..+.=-.+.-. . ..-..+.+..- -....+++....+ .++.||.++
T Consensus 116 dn~qivSGSrDkTiklwnt~g~ck~t~~~~-------~~~~WVscvrfsP---~~~~p~Ivs~s~D----ktvKvWnl~- 180 (315)
T KOG0279|consen 116 DNRQIVSGSRDKTIKLWNTLGVCKYTIHED-------SHREWVSCVRFSP---NESNPIIVSASWD----KTVKVWNLR- 180 (315)
T ss_pred CCceeecCCCcceeeeeeecccEEEEEecC-------CCcCcEEEEEEcC---CCCCcEEEEccCC----ceEEEEccC-
Q ss_pred CCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEECCCCCCCCCCCccccccccc
Q 017381 285 GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSLNYL 364 (372)
Q Consensus 285 ~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~~~~~~~~~~~~~~~~ 364 (372)
..++...+.+. ..+-....+.-+|.++..++..+++..+|+.+++- +-..+-.-..++|+|+-+.+
T Consensus 181 ----------~~~l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 181 ----------NCQLRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRY 246 (315)
T ss_pred ----------Ccchhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCce
Q ss_pred c
Q 017381 365 A 365 (372)
Q Consensus 365 ~ 365 (372)
+
T Consensus 247 w 247 (315)
T KOG0279|consen 247 W 247 (315)
T ss_pred e
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.44 E-value=1.2e+02 Score=27.49 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=45.2
Q ss_pred CCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC--eEEEE
Q 017381 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP--EILYY 335 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~y 335 (372)
.+|+|.+..+ ..+.+|+++...++.....+.... ........++.|++.. ..+ .++.|
T Consensus 97 ~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~------------~i~sl~~~~~~I~vgD-~~~sv~~~~~ 156 (321)
T PF03178_consen 97 FNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPF------------YITSLSVFKNYILVGD-AMKSVSLLRY 156 (321)
T ss_dssp ETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSS------------SEEEEEEETTEEEEEE-SSSSEEEEEE
T ss_pred hCCEEEEeec-------CEEEEEEccCcccchhhheecceE------------EEEEEeccccEEEEEE-cccCEEEEEE
Confidence 7888655543 678999998666588777663221 1233335678777654 333 35677
Q ss_pred ECCCCceEECCCCCCCC
Q 017381 336 NVARRTWHWLPSCPSLP 352 (372)
Q Consensus 336 d~~~~~w~~v~~~~~~~ 352 (372)
|.+.++...+..-+.+.
T Consensus 157 ~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 157 DEENNKLILVARDYQPR 173 (321)
T ss_dssp ETTTE-EEEEEEESS-B
T ss_pred EccCCEEEEEEecCCCc
Confidence 88777788776544443
No 116
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=51.15 E-value=40 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=16.9
Q ss_pred CEEEEEeecCCeEEEEECCCCceEE
Q 017381 320 GMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 320 ~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
|.||+. ...+.++++|.+|++-.+
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEE
Confidence 346665 456789999999985433
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=50.75 E-value=2.4e+02 Score=27.16 Aligned_cols=143 Identities=7% Similarity=0.006 Sum_probs=77.2
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCC-CC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCC
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPT-YP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~-~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
-++..+ ...-+++||..|++..++-++- .+ .....|.+.+.+ .++++.| ....+++....++.|-..- .+
T Consensus 272 ~i~~s~-rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G--~~G~I~lLhakT~eli~s~--Ki 343 (514)
T KOG2055|consen 272 VIFTSG-RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS---NFIAIAG--NNGHIHLLHAKTKELITSF--KI 343 (514)
T ss_pred EEEecc-cceEEEEeeccccccccccCCCCcccchhheeEecCCC---CeEEEcc--cCceEEeehhhhhhhhhee--ee
Confidence 345444 4578899999999998887653 22 122233332222 2444444 2346777888888885544 33
Q ss_pred CccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccc-cceeeeccCCCeEEEEEee
Q 017381 190 PSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGV 268 (372)
Q Consensus 190 p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~ 268 (372)
+. ... .-....+|+..|+.+....|.++|+.++...... .-.+..+ ..+... .+|.++.+|.
T Consensus 344 eG-~v~----~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf---------~D~G~v~gts~~~S--~ng~ylA~GS- 406 (514)
T KOG2055|consen 344 EG-VVS----DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF---------VDDGSVHGTSLCIS--LNGSYLATGS- 406 (514)
T ss_pred cc-EEe----eEEEecCCcEEEEEcCCceEEEEecCCcceEEEE---------eecCccceeeeeec--CCCceEEecc-
Confidence 32 111 1122246766666544446999999887444322 2222222 122212 6888666653
Q ss_pred ecCCccceEEEEEEc
Q 017381 269 GRNGISTTMKLWELG 283 (372)
Q Consensus 269 ~~~~~~~~i~vw~l~ 283 (372)
...-+.||..+
T Consensus 407 ----~~GiVNIYd~~ 417 (514)
T KOG2055|consen 407 ----DSGIVNIYDGN 417 (514)
T ss_pred ----CcceEEEeccc
Confidence 23456777653
No 118
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=50.26 E-value=1.9e+02 Score=26.04 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=72.4
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc----ccccCCCCccccc
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS----KFDIDGFPSMILS 195 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~----~~~~~~~p~~~~~ 195 (372)
++.+.|||-.|..-...-|++..+- -..+|.+++ ..|+.||. .+.+-||+..+..=+ ... .++.+
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WV-MtCA~sPSg---~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r--~l~gH--- 144 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWV-MTCAYSPSG---NFVACGGL--DNKCSIYPLSTRDAEGNVRVSR--ELAGH--- 144 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeE-EEEEECCCC---CeEEecCc--CceeEEEecccccccccceeee--eecCc---
Confidence 4577889998866433333332211 123454543 46777763 456778888743211 111 12211
Q ss_pred cCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccc
Q 017381 196 QSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST 275 (372)
Q Consensus 196 ~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~ 275 (372)
..+-...-|+++.-...+.+..+..-.|+++.+-.....- ...+.....+. . .+++.|+.++.. .
T Consensus 145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-------H~gDV~slsl~-p--~~~ntFvSg~cD-----~ 209 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-------HTGDVMSLSLS-P--SDGNTFVSGGCD-----K 209 (343)
T ss_pred cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-------CcccEEEEecC-C--CCCCeEEecccc-----c
Confidence 1122345566654444455555677889887655432211 11222223343 3 588888887742 4
Q ss_pred eEEEEEEcC
Q 017381 276 TMKLWELGC 284 (372)
Q Consensus 276 ~i~vw~l~~ 284 (372)
...+|.+.+
T Consensus 210 ~aklWD~R~ 218 (343)
T KOG0286|consen 210 SAKLWDVRS 218 (343)
T ss_pred ceeeeeccC
Confidence 568998753
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.10 E-value=1.4e+02 Score=27.20 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=22.9
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCC
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENG 227 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~ 227 (372)
.-.+++++|.....++...+|-.||+.+.
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~ 73 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKR 73 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccch
Confidence 34578899987777777778999999865
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=49.41 E-value=1.8e+02 Score=25.37 Aligned_cols=198 Identities=14% Similarity=0.067 Sum_probs=88.4
Q ss_pred ecCc-EEEEecCCCceEEEEeccccceec-cCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 108 SSKG-LLCFSLPSSSSFLVCNLVTLSSRT-IDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 108 s~~G-ll~~~~~~~~~~~v~NP~t~~~~~-lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
+.+| .+++.....+.+.+||+.+++... ++.... ...+.+.+.+ -++++... ....+.+||..++. .+.
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g--~~l~~~~~--~~~~l~~~d~~~~~--~~~ 109 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---PELFALHPNG--KILYIANE--DDNLVTVIDIETRK--VLA 109 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---ccEEEECCCC--CEEEEEcC--CCCeEEEEECCCCe--EEe
Confidence 4444 444444345789999999887543 332211 1233343322 24444332 23478889987643 121
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeC-CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeE
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPE-PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~-~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L 262 (372)
.++. . ....++.+ +|.+++.+.. ...+..||..+.+..... + .+..... ..+ . -+|+.
T Consensus 110 --~~~~---~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-~-------~~~~~~~-~~~-s--~dg~~ 170 (300)
T TIGR03866 110 --EIPV---G--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-L-------VDQRPRF-AEF-T--ADGKE 170 (300)
T ss_pred --EeeC---C--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-E-------cCCCccE-EEE-C--CCCCE
Confidence 1111 0 01112222 5666655543 234667787765432211 1 1111111 112 1 46665
Q ss_pred EEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceE-EEE-eeCCEEEEEeecCCeEEEEECCCC
Q 017381 263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV-YCF-WHQGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
+++... ....+.+|.+... + .+.++..... .... ...... ..+ ..+..+|+.....+.+.+||+++.
T Consensus 171 l~~~~~----~~~~v~i~d~~~~-~--~~~~~~~~~~-~~~~---~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 171 LWVSSE----IGGTVSVIDVATR-K--VIKKITFEIP-GVHP---EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EEEEcC----CCCEEEEEEcCcc-e--eeeeeeeccc-cccc---ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 544431 1246888877532 2 2222211000 0000 000111 122 234556665544567999999877
Q ss_pred ceEE
Q 017381 341 TWHW 344 (372)
Q Consensus 341 ~w~~ 344 (372)
+-..
T Consensus 240 ~~~~ 243 (300)
T TIGR03866 240 EVLD 243 (300)
T ss_pred cEEE
Confidence 6543
No 121
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.06 E-value=2.1e+02 Score=26.00 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=55.2
Q ss_pred cEEEEEecCCCeeeccCCCCccccccCCCcc--cccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCC-CEEEEEe
Q 017381 217 FSIVRFDLENGIWETPNDANDHMTMMLPHEL--TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVER 293 (372)
Q Consensus 217 ~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~--~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~ 293 (372)
..|-.||+.+++-+.+...+-| .|... +-..++ ..-.+++|++... .....+.||.++..+ .=+++..
T Consensus 78 SHVH~yd~e~~~VrLLWkesih----~~~~WaGEVSdIl-YdP~~D~LLlAR~----DGh~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIH----DKTKWAGEVSDIL-YDPYEDRLLLARA----DGHANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccC----Cccccccchhhee-eCCCcCEEEEEec----CCcceeeeEEEcccCCceeeccC
Confidence 3588999998887665422100 12211 112344 1226788888754 345689999998543 3333322
Q ss_pred cChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 017381 294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 294 lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
-|.. ... ......|++..+. .....+|.|||+.+++|.
T Consensus 149 ~ps~--KG~------~~~D~a~F~i~~~----~~g~~~i~~~Dli~~~~~ 186 (339)
T PF09910_consen 149 NPSL--KGT------LVHDYACFGINNF----HKGVSGIHCLDLISGKWV 186 (339)
T ss_pred CCCc--Cce------EeeeeEEEecccc----ccCCceEEEEEccCCeEE
Confidence 2211 000 0112334433210 112357999999999993
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.10 E-value=2.5e+02 Score=26.76 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=58.6
Q ss_pred CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEee--eCCcEEEEEecCCC-eeeccCCCCccccccCC
Q 017381 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTT--PEPFSIVRFDLENG-IWETPNDANDHMTMMLP 244 (372)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~--~~~~~i~~yD~~~~-~w~~i~~p~~~~~~~~p 244 (372)
+..+.|||.+.+. .++ .+|.+.- .-..+.+...=||+. .++..+..+|++.. .+..+. ++
T Consensus 368 d~~vkiwdlks~~--~~a--~Fpght~----~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---------l~ 430 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVA--KFPGHTG----PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---------LD 430 (506)
T ss_pred CceEEEEEcCCcc--ccc--cCCCCCC----ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---------cc
Confidence 3488899988876 444 4554211 223444444445553 34555999999754 344443 44
Q ss_pred CcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 245 HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 245 ~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
....-..+--+ -.|+...+++ ..+.|+..+.... |+++..++
T Consensus 431 ~~~~v~s~~fD--~SGt~L~~~g-------~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 431 EKKEVNSLSFD--QSGTYLGIAG-------SDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred ccccceeEEEc--CCCCeEEeec-------ceeEEEEEecccccceeeehhh
Confidence 43221122113 4677777765 4678888876554 99997764
No 123
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.54 E-value=3.4e+02 Score=28.02 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=76.7
Q ss_pred EecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCC-CCcccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QSWSKF 184 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~-~~W~~~ 184 (372)
.+-+|=+...+..++++-|||-..+-. ........ ...++.+.. ..+.++... -+..|..+|... ...|..
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~--~g~~llssS---LDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTA--RGNVLLSSS---LDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEe--cCCEEEEee---cCCeEEeeeecccceeeee
Confidence 466775555555678899998765542 11111000 000111111 111222211 223566666654 223333
Q ss_pred ccCCCCccccccCCCcccEEEC--CEEEEeee-CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 185 DIDGFPSMILSQSSHQEGVFYK--GSLYFTTP-EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~--G~~y~~~~-~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
. .| .......+.++ |.+.+.+. +.+.|.+.+++|.+--.+. .| .-...... .+ . ..|.
T Consensus 431 t---~P-----~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sG------HEgPVs~l-~f-~--~~~~ 491 (893)
T KOG0291|consen 431 T---SP-----EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SG------HEGPVSGL-SF-S--PDGS 491 (893)
T ss_pred c---CC-----CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cC------CCCcceee-EE-c--cccC
Confidence 3 11 12334567777 88887765 3456888888888776553 11 11111111 12 2 4566
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecC
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVP 295 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp 295 (372)
+.+.+. . ..++.+|.. -.+|..+.+++
T Consensus 492 ~LaS~S-W----DkTVRiW~i--f~s~~~vEtl~ 518 (893)
T KOG0291|consen 492 LLASGS-W----DKTVRIWDI--FSSSGTVETLE 518 (893)
T ss_pred eEEecc-c----cceEEEEEe--eccCceeeeEe
Confidence 554433 2 368999975 34566666654
No 124
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=46.97 E-value=3e+02 Score=27.29 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=60.0
Q ss_pred CcEEEEecCCCceEEEEeccccc--eeccCCCCCCC-C-------ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCC
Q 017381 110 KGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPF-D-------FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179 (372)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~--~~~lP~~~~~~-~-------~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 179 (372)
+|.|++... .+.++.+|..|++ |+.-+..+... . ....++.. -+|++.. ....+..+|.+++
T Consensus 69 ~g~vyv~s~-~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~----~~v~v~t---~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTS-YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD----GKVFFGT---LDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECC-CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC----CEEEEEc---CCCEEEEEECCCC
Confidence 777777543 3578888999987 54333221110 0 01122221 1455432 2346778888776
Q ss_pred C--ccccccCCCCccccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCC--eeecc
Q 017381 180 S--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENG--IWETP 232 (372)
Q Consensus 180 ~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~--~w~~i 232 (372)
+ |+.... .... .......+++.+|++|.-... ...+.+||.++. .|+.-
T Consensus 141 k~~W~~~~~-~~~~---~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 141 KVVWSKKNG-DYKA---GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEeecccc-cccc---cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 5 865431 1111 011234578889998875431 246999999865 56643
No 125
>PF13919 ASXH: Asx homology domain
Probab=46.92 E-value=14 Score=29.22 Aligned_cols=46 Identities=30% Similarity=0.570 Sum_probs=34.1
Q ss_pred CChhhhcCCCHHHHHHHHccCCchhhh--------------------HHhhchhhhhhcccChhhh
Q 017381 8 MDPAIWSRLPEDLLDHVLSFLPPKMLL--------------------KLRSTCKHFNSLLFSPSFL 53 (372)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~rLp~~~l~--------------------r~r~Vck~W~~~i~~~~F~ 53 (372)
+++..|..||.+=..+||..||..+.. .|+..|..|+..+.+-.|.
T Consensus 39 ~N~~tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~ 104 (138)
T PF13919_consen 39 LNPETWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFD 104 (138)
T ss_pred hCHHHHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCC
Confidence 567889999999999999999965442 2566677777766655443
No 126
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.91 E-value=49 Score=18.12 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=18.5
Q ss_pred eCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 318 HQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 318 ~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
.++.+|+.. ..+.++++|.++++-.+
T Consensus 5 ~~~~v~~~~-~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGS-TDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEc-CCCEEEEEEcccCcEEE
Confidence 455667654 45789999999985443
No 127
>PRK04043 tolB translocation protein TolB; Provisional
Probab=43.68 E-value=3e+02 Score=26.33 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=98.7
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (372)
...++++|..|++-+.|...+... ....+.+ +.-+++..........+++++..++.++.+. ..+. ..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~--~~~~~SP--DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT--~~~~------~d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML--VVSDVSK--DGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT--NYPG------ID 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE--EeeEECC--CCCEEEEEEccCCCcEEEEEECCCCcEEEcc--cCCC------cc
Confidence 358999999999888776432111 1112222 2224554444344568899999999888876 3221 01
Q ss_pred cccEEE-CC-EEEEeeeC--CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC-Cc-
Q 017381 200 QEGVFY-KG-SLYFTTPE--PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-GI- 273 (372)
Q Consensus 200 ~~~v~~-~G-~~y~~~~~--~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~-~~- 273 (372)
..+.+. +| .+|+.... ...|..+|..+.+.+.+... .. ... .+. -+|+..+....... ..
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--------g~--~~~-~~S---PDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--------GK--NNS-SVS---TYKNYIVYSSRETNNEFG 345 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--------CC--cCc-eEC---CCCCEEEEEEcCCCcccC
Confidence 112222 45 67776532 23688899988777554211 11 111 232 46664443332211 10
Q ss_pred cceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecC--CeEEEEECCCCceEECCC
Q 017381 274 STTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTW--PEILYYNVARRTWHWLPS 347 (372)
Q Consensus 274 ~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~v~~yd~~~~~w~~v~~ 347 (372)
....+||.++.++ .+..+..-. ......+ -+|..|++..... ..+...++..+.=..++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~~--------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTANG--------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCCC--------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 1235677776543 466554321 0111223 3555676665432 248899998876666653
No 128
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=42.98 E-value=1.2e+02 Score=23.90 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=33.8
Q ss_pred CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC---EEE
Q 017381 216 PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN---WIE 290 (372)
Q Consensus 216 ~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~---W~~ 290 (372)
+..+++||..+++=-.. .. +|++.....+-..|.....|.++++.+ .|+-+|.+++ |+-
T Consensus 72 ~t~llaYDV~~N~d~Fy-ke-------~~DGvn~i~~g~~~~~~~~l~ivGGnc--------si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFY-KE-------VPDGVNAIVIGKLGDIPSPLVIVGGNC--------SIQGFDYEGNEIFWTV 133 (136)
T ss_pred cceEEEEEcccCchhhh-hh-------CccceeEEEEEecCCCCCcEEEECceE--------EEEEeCCCCcEEEEEe
Confidence 45699999987643221 12 566654221110011456688888743 6777777765 874
No 129
>PRK05137 tolB translocation protein TolB; Provisional
Probab=41.88 E-value=3.2e+02 Score=26.12 Aligned_cols=101 Identities=8% Similarity=0.033 Sum_probs=53.6
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (372)
...++++|+.+++.+.+...+... ....+.+.+ -+++..........++++|..++.-+.+. ..+. ..
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~--~~~~~SPDG--~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt--~~~~------~~ 292 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMT--FAPRFSPDG--RKVVMSLSQGGNTDIYTMDLRSGTTTRLT--DSPA------ID 292 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcc--cCcEECCCC--CEEEEEEecCCCceEEEEECCCCceEEcc--CCCC------cc
Confidence 358999999999887776433211 122233322 24544443334457888898887766554 2111 01
Q ss_pred cccEE-ECC-EEEEeeeC--CcEEEEEecCCCeeecc
Q 017381 200 QEGVF-YKG-SLYFTTPE--PFSIVRFDLENGIWETP 232 (372)
Q Consensus 200 ~~~v~-~~G-~~y~~~~~--~~~i~~yD~~~~~w~~i 232 (372)
..+.+ -+| .+++.... ...|..+|..+.+...+
T Consensus 293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 11222 245 34444321 23578888877655544
No 130
>PTZ00334 trans-sialidase; Provisional
Probab=41.53 E-value=87 Score=32.46 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=48.7
Q ss_pred ccEEE-CCEEEEee-e---C--CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCC-CeEEEEEeeecCC
Q 017381 201 EGVFY-KGSLYFTT-P---E--PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES-NKLYLIGGVGRNG 272 (372)
Q Consensus 201 ~~v~~-~G~~y~~~-~---~--~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~-g~L~vv~~~~~~~ 272 (372)
.+|.+ ||.+.+-. . + ...++.|-.++..|..-.-- -|.++..+.++ | ++ |+|.|+..+.+
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~-------s~~gC~~P~I~-E--We~gkLlM~t~C~d-- 331 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGM-------SADGCSDPSVV-E--WKEGKLMMMTACDD-- 331 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCC-------CCCCCCCCEEE-E--EcCCeEEEEEEeCC--
Confidence 45655 56655431 1 1 13467887777779753211 34556667777 7 95 99999987532
Q ss_pred ccceEEEEEEcCCCC-EEEE-EecC
Q 017381 273 ISTTMKLWELGCGGN-WIEV-ERVP 295 (372)
Q Consensus 273 ~~~~i~vw~l~~~~~-W~~v-~~lp 295 (372)
..-.||+-.+-+. |++. .+++
T Consensus 332 --G~RrVYES~DmG~tWtEAlGTLs 354 (780)
T PTZ00334 332 --GRRRVYESGDKGDSWTEALGTLS 354 (780)
T ss_pred --CCEEEEEECCCCCChhhCCCccc
Confidence 2347888765555 8873 3444
No 131
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.56 E-value=4.3e+02 Score=27.27 Aligned_cols=62 Identities=24% Similarity=0.148 Sum_probs=33.1
Q ss_pred ecCcEEEEecCCCceEEEEeccccc-eeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLS-SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~-~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 179 (372)
|.+.++.+.+ ..+.+.+||-.|.+ .++++.- ...+..|.+ ++.|.|+ |. ...+.++||....
T Consensus 382 S~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvp-gd~~Iv~--G~--k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 382 SSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVP-GDRYIVL--GT--KNGELQVFDLASA 444 (888)
T ss_pred ecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecC-CCceEEE--ec--cCCceEEEEeehh
Confidence 4444444444 35789999999776 4555532 111222332 3434333 32 2247788887654
No 132
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=40.54 E-value=3e+02 Score=25.48 Aligned_cols=111 Identities=9% Similarity=0.123 Sum_probs=56.4
Q ss_pred EECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 204 FYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 204 ~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
.++.++...++...++.+.|..+.+--... ...-..-..+.. .+|-+ |.- ....++.||.|+
T Consensus 244 qyd~rviisGSSDsTvrvWDv~tge~l~tl---------ihHceaVLhlrf---~ng~m--vtc----SkDrsiaVWdm~ 305 (499)
T KOG0281|consen 244 QYDERVIVSGSSDSTVRVWDVNTGEPLNTL---------IHHCEAVLHLRF---SNGYM--VTC----SKDRSIAVWDMA 305 (499)
T ss_pred eccceEEEecCCCceEEEEeccCCchhhHH---------hhhcceeEEEEE---eCCEE--EEe----cCCceeEEEecc
Confidence 346666666666778999998876543321 111101123331 34432 221 224689999996
Q ss_pred CCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 284 ~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
... ..-++..+. +....+..+.-+++.++.......+-+||+.|++.-+
T Consensus 306 sps---------~it~rrVLv---GHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 306 SPT---------DITLRRVLV---GHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred Cch---------HHHHHHHHh---hhhhheeeeccccceEEEecCCceEEEEeccceeeeh
Confidence 311 111111111 2344555554455533333334568888888887654
No 133
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=39.57 E-value=2.8e+02 Score=24.72 Aligned_cols=138 Identities=18% Similarity=0.105 Sum_probs=68.6
Q ss_pred cccccCCCCCee-eecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeCCC
Q 017381 78 YPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTPS 155 (372)
Q Consensus 78 ~~~~d~~~~~w~-~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~~~ 155 (372)
+..+|+..++-. +.++|. ..-..-++-.++-|+.-...++..++||+.|-+- .+++-. ..+-|+...+.
T Consensus 70 l~~~d~~tg~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-----~EGWGLt~dg~ 140 (264)
T PF05096_consen 70 LRKVDLETGKVLQSVPLPP----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-----GEGWGLTSDGK 140 (264)
T ss_dssp EEEEETTTSSEEEEEE-TT----T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-----SS--EEEECSS
T ss_pred EEEEECCCCcEEEEEECCc----cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC-----CcceEEEcCCC
Confidence 445677666543 344442 1122234444665554455578899999987543 332221 23445543322
Q ss_pred CEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeec
Q 017381 156 GYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET 231 (372)
Q Consensus 156 ~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~ 231 (372)
.++...| +..++..|+++ .+......+.....+...-..--+++|.+|.-......|+..|+.+.+-..
T Consensus 141 --~Li~SDG---S~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 141 --RLIMSDG---SSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --CEEEE-S---SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred --EEEEECC---ccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 3444332 35777777764 222210011110011111223447899999988877889999999987654
No 134
>PRK04792 tolB translocation protein TolB; Provisional
Probab=39.00 E-value=3.6e+02 Score=25.96 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=55.5
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ 200 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~ 200 (372)
..++++|..+++...+...+... ....+.+.+. +++..........++++|..++..+.+. .-.. ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl~tg~~~~lt--~~~~------~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGIN--GAPRFSPDGK--KLALVLSKDGQPEIYVVDIATKALTRIT--RHRA------IDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCc--CCeeECCCCC--EEEEEEeCCCCeEEEEEECCCCCeEECc--cCCC------Ccc
Confidence 47999999998877665433211 1223333322 4554444334457888899988877665 2111 011
Q ss_pred ccEE-ECC-EEEEeee--CCcEEEEEecCCCeeecc
Q 017381 201 EGVF-YKG-SLYFTTP--EPFSIVRFDLENGIWETP 232 (372)
Q Consensus 201 ~~v~-~~G-~~y~~~~--~~~~i~~yD~~~~~w~~i 232 (372)
.+.+ -+| .+++... ....+..+|+.+.+...+
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 1222 245 4554432 234688889887777654
No 135
>smart00284 OLF Olfactomedin-like domains.
Probab=38.49 E-value=2.8e+02 Score=24.53 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred ecCcEEEEecCCCceEEEEeccccce---eccCCCCC----CC-----CceeEEEEeCCCCEEEEEEeecCCCceEEEEE
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSS---RTIDFPTY----PF-----DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYD 175 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~---~~lP~~~~----~~-----~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~ 175 (372)
.-||-+++.......++-+|..|+.. +.||.... +. ....++.|.. +=-.|++.........+---|
T Consensus 81 VYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvIYat~~~~g~ivvSkLn 159 (255)
T smart00284 81 VYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVIYATEQNAGKIVISKLN 159 (255)
T ss_pred EECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC-ceEEEEeccCCCCCEEEEeeC
Confidence 45777777665567888899999885 44553321 11 1123444421 112222222111111111122
Q ss_pred CC----CCCccccccCCCCccccccCCCcccEEECCEEEEeee----CCcEEEEEecCCCeeeccCCCCccccccCCCcc
Q 017381 176 ST----DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTP----EPFSIVRFDLENGIWETPNDANDHMTMMLPHEL 247 (372)
Q Consensus 176 s~----~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~----~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~ 247 (372)
+. ..+|.... +. .....+-.+-|++|.+.. +...-.+||+.+.+-..+.+| ++...
T Consensus 160 p~tL~ve~tW~T~~----~k-----~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~-------f~n~y 223 (255)
T smart00284 160 PATLTIENTWITTY----NK-----RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP-------FENMY 223 (255)
T ss_pred cccceEEEEEEcCC----Cc-----ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee-------ecccc
Confidence 21 34676543 11 112345567899999964 234568999988766655555 55544
Q ss_pred cccceeeeccCCCeEEEEE
Q 017381 248 TFFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 248 ~~~~lv~e~~~~g~L~vv~ 266 (372)
....++..+-.+.+||+-.
T Consensus 224 ~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 224 EYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ccceeceeCCCCCeEEEEe
Confidence 4344442111466677654
No 136
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.59 E-value=1e+02 Score=30.92 Aligned_cols=120 Identities=13% Similarity=0.223 Sum_probs=61.8
Q ss_pred EECCEEEEeeeCCcEEEEEecCCC-eeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEE
Q 017381 204 FYKGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL 282 (372)
Q Consensus 204 ~~~G~~y~~~~~~~~i~~yD~~~~-~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l 282 (372)
..+|+...-++...++-..+...+ .|..-. -+. .-++..+...+ + .+..|++.+|. ...|-+|.+
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st-ir~-----H~DYVkcla~~-a--k~~~lvaSgGL-----D~~IflWDi 147 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMST-IRT-----HKDYVKCLAYI-A--KNNELVASGGL-----DRKIFLWDI 147 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhh-hhc-----ccchheeeeec-c--cCceeEEecCC-----CccEEEEEc
Confidence 445655555555667877777644 243211 000 22334333333 3 67777777663 368999998
Q ss_pred cCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeC--CEEEEEeecCCeEEEEECCCCc
Q 017381 283 GCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 283 ~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
+.... +++.+........... +....++..+.+ +.+++.++..+.+.+||+++++
T Consensus 148 n~~~~-~l~~s~n~~t~~sl~s---G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 148 NTGTA-TLVASFNNVTVNSLGS---GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred cCcch-hhhhhccccccccCCC---CCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 74322 1111111000011110 122345555433 3577777777789999999973
No 137
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=36.90 E-value=3.9e+02 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=25.5
Q ss_pred eEEEEecCcEEEEecCCCceEEEEeccccceecc
Q 017381 103 ATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTI 136 (372)
Q Consensus 103 ~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~l 136 (372)
+.+..|++|-.+..++.+.++.||++.|.+.+..
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhc
Confidence 4456788886555665677889999999997664
No 138
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=36.78 E-value=56 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=15.7
Q ss_pred CeEEEEECCCCceEEC-CCCCC
Q 017381 330 PEILYYNVARRTWHWL-PSCPS 350 (372)
Q Consensus 330 ~~v~~yd~~~~~w~~v-~~~~~ 350 (372)
+.++.||++|++.+.+ ..+.+
T Consensus 37 GRll~ydp~t~~~~vl~~~L~f 58 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYF 58 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESS
T ss_pred cCEEEEECCCCeEEEehhCCCc
Confidence 4699999999998765 34443
No 139
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.69 E-value=3.7e+02 Score=25.35 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred CCEEEEEEeecCCCceEEEEECCCC-----CccccccCCCCccccccCCCcccEEECCEEEEeeeC---CcEEEEEecCC
Q 017381 155 SGYKIFMLFAKSFPNYAFVYDSTDQ-----SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE---PFSIVRFDLEN 226 (372)
Q Consensus 155 ~~ykvv~~~~~~~~~~~~vy~s~~~-----~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~---~~~i~~yD~~~ 226 (372)
+.|.++..........+++.+...+ .|+.+.. ..+. ........++.+|+++.. ...++.+|+.+
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~------~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~ 310 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDG------VEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD 310 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-------EEEEEEETTEEEEEE-TT-TT-EEEEEETTS
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCc------eEEEEEccCCEEEEeeCCCCCCcEEEEecccc
Confidence 4454444333222367888888775 6777651 1111 111133457889988753 35799999886
Q ss_pred Ce---eeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEE-EecChHHHHHh
Q 017381 227 GI---WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEV-ERVPEMMCRKF 302 (372)
Q Consensus 227 ~~---w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v-~~lp~~~~~~~ 302 (372)
-. |..+..+ -.....-..+. . .++.|++.... .....+.++.++ ..|... ..+|..
T Consensus 311 ~~~~~~~~~l~~-------~~~~~~l~~~~-~--~~~~Lvl~~~~---~~~~~l~v~~~~--~~~~~~~~~~p~~----- 370 (414)
T PF02897_consen 311 PSPAEWWTVLIP-------EDEDVSLEDVS-L--FKDYLVLSYRE---NGSSRLRVYDLD--DGKESREIPLPEA----- 370 (414)
T ss_dssp TSGGGEEEEEE---------SSSEEEEEEE-E--ETTEEEEEEEE---TTEEEEEEEETT---TEEEEEEESSSS-----
T ss_pred cccccceeEEcC-------CCCceeEEEEE-E--ECCEEEEEEEE---CCccEEEEEECC--CCcEEeeecCCcc-----
Confidence 54 5533222 11111111222 1 57777776542 234567777654 334433 333311
Q ss_pred hhhccCCCceEEEE---eeCCEEEEEee--c-CCeEEEEECCCCceEEC
Q 017381 303 MSVCYHNYDHVYCF---WHQGMICVCCY--T-WPEILYYNVARRTWHWL 345 (372)
Q Consensus 303 ~~~~~~~~~~~~~~---~~~~~i~~~~~--~-~~~v~~yd~~~~~w~~v 345 (372)
..+..+ ...+.+++.-. . ...++.||+.+++.+.+
T Consensus 371 --------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 371 --------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp --------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred --------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 112222 13455555432 2 23699999999988764
No 140
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=36.09 E-value=85 Score=23.62 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=26.3
Q ss_pred CceEEEEecccc-ceeccCCCCCCCCceeEEEEeCCCCEEEEEEee
Q 017381 120 SSSFLVCNLVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFA 164 (372)
Q Consensus 120 ~~~~~v~NP~t~-~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~ 164 (372)
..+++++||.|+ .|....+-. ..-.+-+++..+.|+||.+.+
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~~---~~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKHA---VTVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred eeEEEEECCCCcceeEeCCCCc---eeEEEEecCCCcEEEEEEecC
Confidence 358999999986 787544311 111222345667899998765
No 141
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.98 E-value=5.3e+02 Score=26.69 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (372)
+|.+...+++...|-++|..+.-.-..-.. ...++...+.. ..|+..+... -..++..|++..+
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFte-------Hts~Vt~v~f~----~~g~~llssS-----LDGtVRAwDlkRY 424 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTE-------HTSGVTAVQFT----ARGNVLLSSS-----LDGTVRAWDLKRY 424 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEecc-------CCCceEEEEEE----ecCCEEEEee-----cCCeEEeeeeccc
Confidence 677777776666688888766422221101 11222222222 3455444332 1257899999876
Q ss_pred CCEEEEEecChHHHHHhhhhccCCCceEEEEeeC--CEEEEEe-ecCCeEEEEECCCCceEEC
Q 017381 286 GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCC-YTWPEILYYNVARRTWHWL 345 (372)
Q Consensus 286 ~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~v~~yd~~~~~w~~v 345 (372)
.+.... +.|. ...+.|++.+ |.|.+.+ .+.-+|++|+++|++...+
T Consensus 425 rNfRTf-t~P~-------------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 425 RNFRTF-TSPE-------------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceeeee-cCCC-------------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 664322 2221 2335566544 4444444 4556899999999988653
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=34.62 E-value=69 Score=30.95 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=43.5
Q ss_pred cceEEEEEEcCCC---CEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCCCceEE--CCC
Q 017381 274 STTMKLWELGCGG---NWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWHW--LPS 347 (372)
Q Consensus 274 ~~~i~vw~l~~~~---~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~~--v~~ 347 (372)
...+.+|+..... .|.+.+.-|..- + |+. .+..|++.-+...+|..||..+++-.. .-.
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~g------i---------cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRG------I---------CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCc------c---------eecCCccceEEEecccceEEEeecccccccceeeec
Confidence 3578999876443 298888876331 1 221 233445544455678888888765433 112
Q ss_pred CCCCC-CCCccccccccccccCCC
Q 017381 348 CPSLP-HKWSCGFSLNYLAAGASG 370 (372)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~~~~~ 370 (372)
.|+.- .-.-|| .+++||+|-
T Consensus 251 ~Plstvaf~~~G---~~L~aG~s~ 271 (673)
T KOG4378|consen 251 HPLSTVAFSECG---TYLCAGNSK 271 (673)
T ss_pred CCcceeeecCCc---eEEEeecCC
Confidence 22210 001166 678888873
No 143
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=34.59 E-value=2.5e+02 Score=27.82 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=44.3
Q ss_pred eEEEEECCCC--CccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCe--eeccCCCCccccccCCC
Q 017381 170 YAFVYDSTDQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLPH 245 (372)
Q Consensus 170 ~~~vy~s~~~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~--w~~i~~p~~~~~~~~p~ 245 (372)
.+.-.|..++ .|+... ..|. ....+...|.+++.+.....+.+||.+|.+ |+. . ++.
T Consensus 442 ~l~AiD~~tGk~~W~~~~--~~p~-------~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~-~---------~g~ 502 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKE--DFPL-------WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF-K---------TGS 502 (527)
T ss_pred eEEEEeCCCCceeeEecC--CCCC-------CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE-e---------CCC
Confidence 4555676665 376554 2221 122345566666666544569999998763 544 2 444
Q ss_pred cccccceeeeccCCCeEEEEEe
Q 017381 246 ELTFFRLVNDGEESNKLYLIGG 267 (372)
Q Consensus 246 ~~~~~~lv~e~~~~g~L~vv~~ 267 (372)
......+.-+ .+|++|++..
T Consensus 503 ~~~a~P~ty~--~~G~qYv~~~ 522 (527)
T TIGR03075 503 GIVGPPVTYE--QDGKQYVAVL 522 (527)
T ss_pred CceecCEEEE--eCCEEEEEEE
Confidence 3333333324 6899999864
No 144
>PRK04792 tolB translocation protein TolB; Provisional
Probab=34.33 E-value=4.3e+02 Score=25.45 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=75.3
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEE-CCE-EEEeee--CCcEEEEEecCCCeeeccC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGS-LYFTTP--EPFSIVRFDLENGIWETPN 233 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~-~y~~~~--~~~~i~~yD~~~~~w~~i~ 233 (372)
+|+.+........++++|..+++-+.+. ..+. ......+. +|+ +++... +...|..+|+.+.+...+.
T Consensus 231 ~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 231 KLAYVSFENRKAEIFVQDIYTQVREKVT--SFPG------INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred EEEEEEecCCCcEEEEEECCCCCeEEec--CCCC------CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence 4444433333457888898887655554 2221 00112222 453 544432 2235888899887776543
Q ss_pred CCCccccccCCCcccccceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCC-CCEEEEEecChHHHHHhhhhccCCCc
Q 017381 234 DANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEVERVPEMMCRKFMSVCYHNYD 311 (372)
Q Consensus 234 ~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~~lp~~~~~~~~~~~~~~~~ 311 (372)
.. +....... + . -+|+ |++.... .....||.++.. ++++++..-. . ..
T Consensus 303 ~~--------~~~~~~p~-w-S--pDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~Lt~~g-~------------~~ 352 (448)
T PRK04792 303 RH--------RAIDTEPS-W-H--PDGKSLIFTSER-----GGKPQIYRVNLASGKVSRLTFEG-E------------QN 352 (448)
T ss_pred cC--------CCCccceE-E-C--CCCCEEEEEECC-----CCCceEEEEECCCCCEEEEecCC-C------------CC
Confidence 11 11111112 2 1 4565 4443321 123567777654 3476653110 0 01
Q ss_pred eEEEE-eeCCEEEEEeecC--CeEEEEECCCCceEECC
Q 017381 312 HVYCF-WHQGMICVCCYTW--PEILYYNVARRTWHWLP 346 (372)
Q Consensus 312 ~~~~~-~~~~~i~~~~~~~--~~v~~yd~~~~~w~~v~ 346 (372)
....+ .+++.|++..... ..|..+|+.+++.+.+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 11122 3566777765433 35888999999887765
No 145
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.10 E-value=3.9e+02 Score=24.82 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCCeEEEEEeeecCC--ccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCC--EEEEEeecCCeEE
Q 017381 258 ESNKLYLIGGVGRNG--ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG--MICVCCYTWPEIL 333 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~--~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~v~ 333 (372)
-.|+||++.+....+ ....-+||.+|..+. +++.+++.+. ... ...+.+++ ++|........+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~----------~~~-Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEH----------PID-SIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEEE----------EES-EEEEESSSS-EEEEEETTTTEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCCC----------ccc-eEEEccCCCcEEEEEcCCCCeEE
Confidence 478999987633222 223578999986443 3444444221 001 22334343 4555554456899
Q ss_pred EEECCCCceEE
Q 017381 334 YYNVARRTWHW 344 (372)
Q Consensus 334 ~yd~~~~~w~~ 344 (372)
+||..+++...
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999986643
No 146
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.08 E-value=3.6e+02 Score=24.21 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=42.5
Q ss_pred CCCeEEEEEeeecCC-c------cceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-e-e----CCEEEE
Q 017381 258 ESNKLYLIGGVGRNG-I------STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-W-H----QGMICV 324 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~-~------~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~-~----~~~i~~ 324 (372)
..|+|+|++.-..+. . ..++-+|.+. .++=.+...+|..... ..+ +..-..+ . . ++.+|+
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~-t~~li~~~~~p~~~~~---~~s---~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLK-TNQLIRRYPFPPDIAP---PDS---FLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETT-TTCEEEEEE--CCCS----TCG---GEEEEEEECTTTTS-SEEEEE
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECC-CCcEEEEEECChHHcc---ccc---ccceEEEEccCCCCcceEEEE
Confidence 678899987422111 1 1345555543 2235555667655432 111 1111122 2 1 147888
Q ss_pred EeecCCeEEEEECCCC-ceEECCC
Q 017381 325 CCYTWPEILYYNVARR-TWHWLPS 347 (372)
Q Consensus 325 ~~~~~~~v~~yd~~~~-~w~~v~~ 347 (372)
.......+++||++++ .|+.+..
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETC
T ss_pred eCCCcCcEEEEEccCCcEEEEecC
Confidence 8766678999999997 5555554
No 147
>PRK05137 tolB translocation protein TolB; Provisional
Probab=33.06 E-value=4.4e+02 Score=25.16 Aligned_cols=187 Identities=10% Similarity=-0.006 Sum_probs=87.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ 200 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~ 200 (372)
..++++|...+.-+.+...... .....+.+.+ -+|+.+........++++|..++..+.+. ..+. . ...
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~--v~~p~wSpDG--~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g-~----~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSL--VLTPRFSPNR--QEITYMSYANGRPRVYLLDLETGQRELVG--NFPG-M----TFA 250 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCC--eEeeEECCCC--CEEEEEEecCCCCEEEEEECCCCcEEEee--cCCC-c----ccC
Confidence 4788888866554544322111 1122232322 24554443334568899999988876665 3221 0 011
Q ss_pred ccEEECC-EEEEeee--CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceE
Q 017381 201 EGVFYKG-SLYFTTP--EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (372)
Q Consensus 201 ~~v~~~G-~~y~~~~--~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i 277 (372)
....-+| .+++... +...|..+|+.+.+...+. . .+......... -+|+-.++... .. ...
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt-~-------~~~~~~~~~~s----pDG~~i~f~s~--~~--g~~ 314 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT-D-------SPAIDTSPSYS----PDGSQIVFESD--RS--GSP 314 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceEEcc-C-------CCCccCceeEc----CCCCEEEEEEC--CC--CCC
Confidence 1112255 3444332 2345888898877665542 1 11111111221 35653333221 11 123
Q ss_pred EEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC--CeEEEEECCCCceEECC
Q 017381 278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--PEILYYNVARRTWHWLP 346 (372)
Q Consensus 278 ~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~yd~~~~~w~~v~ 346 (372)
.||.++.++. ..++..-... ......-.+++.|++..... ..+.++|+.++..+.+.
T Consensus 315 ~Iy~~d~~g~~~~~lt~~~~~------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 315 QLYVMNADGSNPRRISFGGGR------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT 374 (435)
T ss_pred eEEEEECCCCCeEEeecCCCc------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 5666654443 4444321100 01111113556666655332 36899998877666553
No 148
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.28 E-value=87 Score=16.78 Aligned_cols=21 Identities=14% Similarity=0.049 Sum_probs=14.9
Q ss_pred EEeeCCEEEEEeecCCeEEEE
Q 017381 315 CFWHQGMICVCCYTWPEILYY 335 (372)
Q Consensus 315 ~~~~~~~i~~~~~~~~~v~~y 335 (372)
++..+|.||+.....+.|.+|
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 445778889988666667665
No 149
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=32.07 E-value=4.3e+02 Score=24.75 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (372)
...++++|...+.-+.+-..........+.-+.. +++..........+++|+..++.-+.+. .......
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~----~la~~~~~~~~~~i~v~d~~~g~~~~~~-------~~~~~~~ 237 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQ----KLAYVSFESGKPEIYVQDLATGQREKVA-------SFPGMNG 237 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCC----EEEEEEcCCCCcEEEEEECCCCCEEEee-------cCCCCcc
Q ss_pred cccEEECCE-EEEeee--CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccce
Q 017381 200 QEGVFYKGS-LYFTTP--EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT 276 (372)
Q Consensus 200 ~~~v~~~G~-~y~~~~--~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~ 276 (372)
.....-+|+ +++... +...|..+|+.+.....+. .........-+. -+|+..++.. .....
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------~~~~~~~~~~~s---~dg~~l~~~s----~~~g~ 301 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT---------NGPGIDTEPSWS---PDGKSIAFTS----DRGGS 301 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC---------CCCCCCCCEEEC---CCCCEEEEEE----CCCCC
Q ss_pred EEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC---eEEEEECCCCceEECC
Q 017381 277 MKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP---EILYYNVARRTWHWLP 346 (372)
Q Consensus 277 i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~v~~yd~~~~~w~~v~ 346 (372)
..||.++..+. +.++..- ........+..++..++...... .|.+||+.++.++.+.
T Consensus 302 ~~iy~~d~~~~~~~~l~~~-------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 302 PQIYMMDADGGEVRRLTFR-------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ceEEEEECCCCCEEEeecC-------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
No 150
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.75 E-value=1.7e+02 Score=30.49 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=40.3
Q ss_pred EEEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEE-eCCCCEEEEEEeec
Q 017381 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLV-STPSGYKIFMLFAK 165 (372)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~-~~~~~ykvv~~~~~ 165 (372)
.+.+.+|++++.+..++.+..+|..|++...=-.++......-+.|. ..++.|.+|..++.
T Consensus 686 ~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aGg~ 747 (764)
T TIGR03074 686 PLATAGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQYVVIVAGGH 747 (764)
T ss_pred cEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEEEEEEEeCCC
Confidence 46777888877444567899999999994332233322222334565 56888999988864
No 151
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.24 E-value=65 Score=28.05 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=32.5
Q ss_pred EEEeeCCEEEEEeecCCeEEEEECCCCceEECCCCCCCCCCCcccc
Q 017381 314 YCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~~~~~~~~~~~ 359 (372)
.++..++.+|+...+...|...|+.|++.-.--.+| .+..-+|+|
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccF 261 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCF 261 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEe
Confidence 355456778999988889999999999875544455 344456665
No 152
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=30.87 E-value=4.5e+02 Score=24.56 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEEecCcEEEEecC---------CCceEEEEeccccc-eeccCCCCCCC-----CceeEEEEeCCCCEEEEEEeecCCCc
Q 017381 105 LLSSSKGLLCFSLP---------SSSSFLVCNLVTLS-SRTIDFPTYPF-----DFELLTLVSTPSGYKIFMLFAKSFPN 169 (372)
Q Consensus 105 ~~~s~~Gll~~~~~---------~~~~~~v~NP~t~~-~~~lP~~~~~~-----~~~~~~~~~~~~~ykvv~~~~~~~~~ 169 (372)
++...+..+++... ..+.+.|+|+.|++ ..++|.++.++ ....+++.+.+ |.+.+.+.....
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg---k~l~V~n~~p~~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN---KTLLFYQFSPSP 128 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC---CEEEEecCCCCC
Q ss_pred eEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEE---------------EEecCCCeeeccCC
Q 017381 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIV---------------RFDLENGIWETPND 234 (372)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~---------------~yD~~~~~w~~i~~ 234 (372)
.+-+.|.++++=...- .+|. ...--+.-++..+.++.+..... .||..++---.
T Consensus 129 ~V~VvD~~~~kvv~ei--~vp~------~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~--- 197 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMM--DVPD------CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN--- 197 (352)
T ss_pred EEEEEECCCCcEEEEE--eCCC------CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccccc---
Q ss_pred CCccccccCC--CcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC----EEEEEecChHHHHHhhhhccC
Q 017381 235 ANDHMTMMLP--HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN----WIEVERVPEMMCRKFMSVCYH 308 (372)
Q Consensus 235 p~~~~~~~~p--~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~----W~~v~~lp~~~~~~~~~~~~~ 308 (372)
.| .......+.+. .+|.++++.. ..........|.+...+. |..-
T Consensus 198 --------rP~~~~~dg~~~~vs--~eG~V~~id~--~~~~~~~~~~~~~~~~~~~~~~wrP~----------------- 248 (352)
T TIGR02658 198 --------HPAYSNKSGRLVWPT--YTGKIFQIDL--SSGDAKFLPAIEAFTEAEKADGWRPG----------------- 248 (352)
T ss_pred --------CCceEcCCCcEEEEe--cCCeEEEEec--CCCcceecceeeeccccccccccCCC-----------------
Q ss_pred CCceEEEEeeCCEEEE-EeecC--------CeEEEEECCCCc
Q 017381 309 NYDHVYCFWHQGMICV-CCYTW--------PEILYYNVARRT 341 (372)
Q Consensus 309 ~~~~~~~~~~~~~i~~-~~~~~--------~~v~~yd~~~~~ 341 (372)
....+..-..++.+|+ ..... ++|.++|.++++
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
No 153
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.85 E-value=1.6e+02 Score=30.96 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred cceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE---eeCCEEEEEeecCCeEEEEECCCC
Q 017381 274 STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF---WHQGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 274 ~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
...+.+|++++...|+.- ++ .+.+..+.++ .+.++ ++.....+.+-+||+..+
T Consensus 227 DRqVKlWrmnetKaWEvD-tc------------rgH~nnVssvlfhp~q~l-IlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVD-TC------------RGHYNNVSSVLFHPHQDL-ILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cceeeEEEeccccceeeh-hh------------hcccCCcceEEecCccce-eEecCCCccEEEEecccc
Confidence 467999999877779832 11 1233444444 34454 444434567999999876
No 154
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=30.12 E-value=4.7e+02 Score=24.53 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=87.7
Q ss_pred EEEEecCCCceEEEEeccccc-eeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCC
Q 017381 112 LLCFSLPSSSSFLVCNLVTLS-SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFP 190 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~-~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p 190 (372)
|+++.....+++.|.|..|++ ..++|-... ...+.....+.-.+++... +..+-++|..+++ .++ .++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~--~v~--~i~ 75 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR---DGTVSVIDLATGK--VVA--TIK 75 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET---TSEEEEEETTSSS--EEE--EEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC---CCeEEEEECCccc--EEE--EEe
Confidence 344433346789999999887 455553321 1111221221213455442 3578899998876 333 222
Q ss_pred ccccccCCCcccEE--ECCEEEE-eeeCCcEEEEEecCCCee-eccCCCCccccccCCCc---ccccceeeeccCCCeEE
Q 017381 191 SMILSQSSHQEGVF--YKGSLYF-TTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHE---LTFFRLVNDGEESNKLY 263 (372)
Q Consensus 191 ~~~~~~~~~~~~v~--~~G~~y~-~~~~~~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~~---~~~~~lv~e~~~~g~L~ 263 (372)
.+ ....++. -+|+..+ -+.....+..+|.++.+- ..+...+ ++.. .....++.. -.+..+
T Consensus 76 ~G-----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~------~~~~~~~~Rv~aIv~s--~~~~~f 142 (369)
T PF02239_consen 76 VG-----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG------MPVDGPESRVAAIVAS--PGRPEF 142 (369)
T ss_dssp -S-----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E------E-TTTS---EEEEEE---SSSSEE
T ss_pred cC-----CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc------ccccccCCCceeEEec--CCCCEE
Confidence 21 1122333 3775444 445667899999876543 3332111 1211 011234421 344556
Q ss_pred EEEeeecCCccceEEEEEEcCCC--CEEEEEecChHHHHHhhhhccCCCceEEEEee-CCEEEEEeecCCeEEEEECCCC
Q 017381 264 LIGGVGRNGISTTMKLWELGCGG--NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWH-QGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~--~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
++... +.-+||.+|-.. .. .+..+..+ .+. .. ..+.. +..+++....++.+.+.|.+++
T Consensus 143 Vv~lk------d~~~I~vVdy~d~~~~-~~~~i~~g---~~~-------~D-~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 143 VVNLK------DTGEIWVVDYSDPKNL-KVTTIKVG---RFP-------HD-GGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEET------TTTEEEEEETTTSSCE-EEEEEE-----TTE-------EE-EEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEc------cCCeEEEEEecccccc-ceeeeccc---ccc-------cc-cccCcccceeeecccccceeEEEeeccc
Confidence 66542 223678776433 22 12222211 000 11 12222 3344454556678889999988
Q ss_pred ceEE
Q 017381 341 TWHW 344 (372)
Q Consensus 341 ~w~~ 344 (372)
+...
T Consensus 205 k~v~ 208 (369)
T PF02239_consen 205 KLVA 208 (369)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=29.58 E-value=4.3e+02 Score=24.00 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=63.8
Q ss_pred CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcc
Q 017381 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHEL 247 (372)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~ 247 (372)
+..+-+||...++=+..-...+| --..++.+..--+.++-+..|..||+.+..=..+.... .|
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~p--------lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~------~~--- 96 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAP--------LLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD------EG--- 96 (323)
T ss_pred cCcEEEEeccchhhhhheecCCc--------eeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC------Cc---
Confidence 35778888887732221100111 12244555444445554556999999876555442110 11
Q ss_pred cccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee
Q 017381 248 TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327 (372)
Q Consensus 248 ~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (372)
...+.- .-+.=++|.+.. ..+|.+|..-. . ..+... .....++|....+.+++.+.
T Consensus 97 --i~ci~~--~~~~~~vIsgsW----D~~ik~wD~R~--~-~~~~~~-------------d~~kkVy~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 97 --IRCIEY--SYEVGCVISGSW----DKTIKFWDPRN--K-VVVGTF-------------DQGKKVYCMDVSGNRLVVGT 152 (323)
T ss_pred --eEEEEe--eccCCeEEEccc----CccEEEEeccc--c-cccccc-------------ccCceEEEEeccCCEEEEee
Confidence 112201 111222333322 36789996531 0 000000 11234677754443444444
Q ss_pred cCCeEEEEECCCCc
Q 017381 328 TWPEILYYNVARRT 341 (372)
Q Consensus 328 ~~~~v~~yd~~~~~ 341 (372)
....++.||+++..
T Consensus 153 ~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLD 166 (323)
T ss_pred cCceEEEEEccccc
Confidence 56789999999863
No 156
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=29.28 E-value=1.7e+02 Score=26.82 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=39.8
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEee
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~ 268 (372)
.+.+-..+|++|++......+..+|+++.+++.+. - +|.... .|. ..|.+.+|+..
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va-~-------vpG~~r--GL~----f~G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVA-F-------LPGFTR--GLA----FAGDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEE-E-------CCCCCc--ccc----eeCCEEEEEec
Confidence 45677899999999887778999999988888762 1 343221 232 45888888764
No 157
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=28.74 E-value=4.9e+02 Score=24.34 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCcEEEEEecCCCeeeccCCCCccccccCCCccccc-ceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEe
Q 017381 215 EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFF-RLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVER 293 (372)
Q Consensus 215 ~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~-~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~ 293 (372)
...+|-..|+++.+.... ++...... .+.+ ..-.-|++... ....+..|+|.. +
T Consensus 171 ~DrtikIwDlatg~Lklt----------ltGhi~~vr~vav---S~rHpYlFs~g----edk~VKCwDLe~-n------- 225 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLT----------LTGHIETVRGVAV---SKRHPYLFSAG----EDKQVKCWDLEY-N------- 225 (460)
T ss_pred CCceeEEEEcccCeEEEe----------ecchhheeeeeee---cccCceEEEec----CCCeeEEEechh-h-------
Confidence 345677788888776653 22211111 2221 34444555442 235788888741 1
Q ss_pred cChHHHHHhhhhccCCCceEEEEeeC--CEEEEEeecCCeEEEEECCCC
Q 017381 294 VPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 294 lp~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~v~~yd~~~~ 340 (372)
++.+.+ ++....++|.... ..+++.+.....+-+||++++
T Consensus 226 ---kvIR~Y----hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 226 ---KVIRHY----HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred ---hhHHHh----ccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 122222 2344567777543 335555543445788888876
No 158
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=28.21 E-value=5.2e+02 Score=24.49 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=60.6
Q ss_pred ECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccccc-ceeeeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 205 YKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFF-RLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 205 ~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~-~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
.||...+.+...+.|.++|+.+++--..... ..+.... .+. - -+|+++..+... -....+.+|.-+
T Consensus 183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~--------heG~k~~Raif-l--~~g~i~tTGfsr--~seRq~aLwdp~ 249 (472)
T KOG0303|consen 183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA--------HEGAKPARAIF-L--ASGKIFTTGFSR--MSERQIALWDPN 249 (472)
T ss_pred cCCceeeeecccceeEEEcCCCCcEeeeccc--------ccCCCcceeEE-e--ccCceeeecccc--ccccceeccCcc
Confidence 4677777777777899999998865442211 1122222 233 1 467765555422 235678899643
Q ss_pred CCCC---EEEEEecChHHHHHhhhhccCCCceEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 017381 284 CGGN---WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 284 ~~~~---W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
.-.. -+++.+- ...+.-+ .+.+.||+.+.+...|-.|......
T Consensus 250 nl~eP~~~~elDtS---------------nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 250 NLEEPIALQELDTS---------------NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccCcceeEEeccC---------------CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2111 3222221 0111122 3456788888777778888888775
No 159
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.10 E-value=4.6e+02 Score=23.86 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=69.5
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
+.+|-..+.+..++..-+||..++|-..+..=..+. ..+.+.. +..|.+++.|. .+..+..+|.+.. .
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pv--kt~~wv~-~~~~~cl~TGS--WDKTlKfWD~R~~-----~-- 148 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPV--KTCHWVP-GMNYQCLVTGS--WDKTLKFWDTRSS-----N-- 148 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCCCeeeeeecccce--eEEEEec-CCCcceeEecc--cccceeecccCCC-----C--
Confidence 445643444445788999999999987765321111 0111222 23366666554 2234445555421 0
Q ss_pred CCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCcccccceeeeccCCCeEEEE
Q 017381 188 GFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI 265 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv 265 (372)
.+..-++|.+.+ ++-+.--+-+++.....|.+|++++. ++..+.-| +---.++..+. -++..+++
T Consensus 149 pv~t~~LPeRvY--a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp-------Lk~Q~R~va~f----~d~~~~al 215 (347)
T KOG0647|consen 149 PVATLQLPERVY--AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP-------LKWQTRCVACF----QDKDGFAL 215 (347)
T ss_pred eeeeeeccceee--ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc-------ccceeeEEEEE----ecCCceEe
Confidence 111112222111 11111111222323456999999753 44444423 21112223333 35666777
Q ss_pred EeeecCCccceEEEEEEcCC
Q 017381 266 GGVGRNGISTTMKLWELGCG 285 (372)
Q Consensus 266 ~~~~~~~~~~~i~vw~l~~~ 285 (372)
+.+ +.++.|.-+++.
T Consensus 216 Gsi-----EGrv~iq~id~~ 230 (347)
T KOG0647|consen 216 GSI-----EGRVAIQYIDDP 230 (347)
T ss_pred eee-----cceEEEEecCCC
Confidence 764 356778777764
No 160
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=27.97 E-value=1e+02 Score=28.23 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.9
Q ss_pred eeCCEEEEEeecCCeEEEEECCCCceEECCCCCCCC
Q 017381 317 WHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 317 ~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~~~~ 352 (372)
++++++++..-..+++..+|+++++.+.+..+|-.+
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~ 245 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT 245 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC
Confidence 578899999877889999999999999988777654
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=27.37 E-value=5.4e+02 Score=24.37 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=46.5
Q ss_pred cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEE-ec
Q 017381 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVE-RV 294 (372)
Q Consensus 217 ~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~-~l 294 (372)
..|...|+++.+...+... .. ...+-...- .+..|.+.++.+. ...-.-.||.++.+++ ..++. ..
T Consensus 168 ~~i~~idl~tG~~~~v~~~--------~~-wlgH~~fsP--~dp~li~fCHEGp-w~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFED--------TD-WLGHVQFSP--TDPTLIMFCHEGP-WDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp EEEEEEETTT--EEEEEEE--------SS--EEEEEEET--TEEEEEEEEE-S--TTTSS-SEEEEETTS---EESS---
T ss_pred ceEEEEECCCCceeEEEec--------Cc-cccCcccCC--CCCCEEEEeccCC-cceeceEEEEEEcCCCcceeeecCC
Confidence 3588888888887765311 11 111112211 4566666655221 1112236899988776 33332 22
Q ss_pred ChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecC----CeEEEEECCCCceEECCCCC
Q 017381 295 PEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTW----PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----~~v~~yd~~~~~w~~v~~~~ 349 (372)
+.+ ...-+-. .+|..|++..+.. ..|..||++|.+=+.+..+|
T Consensus 236 ~~e------------~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 236 EGE------------SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp TTE------------EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-
T ss_pred CCc------------ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC
Confidence 110 0011122 2445555544322 24899999998666554443
No 162
>PF15408 PH_7: Pleckstrin homology domain
Probab=27.09 E-value=34 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.2
Q ss_pred chhhhHHhhchhhhhhcccChhhh
Q 017381 30 PKMLLKLRSTCKHFNSLLFSPSFL 53 (372)
Q Consensus 30 ~~~l~r~r~Vck~W~~~i~~~~F~ 53 (372)
++-....+-|||+|-..+.+|.|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 445566778999999999988875
No 163
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=26.87 E-value=40 Score=25.34 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=17.0
Q ss_pred CChhhhcCCCHHHHHHHHcc
Q 017381 8 MDPAIWSRLPEDLLDHVLSF 27 (372)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~r 27 (372)
+|+..+..||+||-.+|+..
T Consensus 1 iDp~fLaaLPeDiR~Evl~~ 20 (108)
T PF14377_consen 1 IDPEFLAALPEDIREEVLAQ 20 (108)
T ss_pred CCHHHHHHCCHHHHHHHHHH
Confidence 57888999999999999754
No 164
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=26.62 E-value=4.5e+02 Score=23.17 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=70.7
Q ss_pred cCcEEEEecCCCceEEEEecccccee---ccCCCCCC---------CCceeEEEEeCCCCEEEEEEeecCCCceEEEEEC
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSR---TIDFPTYP---------FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDS 176 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~---~lP~~~~~---------~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s 176 (372)
.||-+++.......++-+|..++... .||..... .....++.|. .+=..|++.........+---|+
T Consensus 77 YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~ 155 (250)
T PF02191_consen 77 YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDP 155 (250)
T ss_pred ECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCc
Confidence 57766666655678999999998855 56654322 1112333331 11112222111111111111122
Q ss_pred C----CCCccccccCCCCccccccCCCcccEEECCEEEEeeeC----CcEEEEEecCCCeeeccCCCCccccccCCCccc
Q 017381 177 T----DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELT 248 (372)
Q Consensus 177 ~----~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~ 248 (372)
. ..+|.... +. .....+-.+-|.+|.+... .....+||+.+++-..+..+ ++....
T Consensus 156 ~tL~v~~tw~T~~----~k-----~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~-------f~~~~~ 219 (250)
T PF02191_consen 156 ETLSVEQTWNTSY----PK-----RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP-------FPNPYG 219 (250)
T ss_pred ccCceEEEEEecc----Cc-----hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee-------eccccC
Confidence 1 24464332 11 1122345578999999753 23458999998877766555 554443
Q ss_pred ccceeeeccCCCeEEEEE
Q 017381 249 FFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 249 ~~~lv~e~~~~g~L~vv~ 266 (372)
....+..+-.+.+||+-.
T Consensus 220 ~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 220 NISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ceEeeeECCCCCeEEEEE
Confidence 333332111466677764
No 165
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.17 E-value=4.5e+02 Score=23.08 Aligned_cols=98 Identities=8% Similarity=0.067 Sum_probs=53.6
Q ss_pred CceEEEEeccccceec-cCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 120 SSSFLVCNLVTLSSRT-IDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~-lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
+..+.+||..|++... +.-- .-....+.|.. .-.|++-++ .+..+.+||-+.++-+.+++ +.. ...
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH--~aqVNtV~fNe---esSVv~Sgs--fD~s~r~wDCRS~s~ePiQi--lde----a~D 146 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGH--LAQVNTVRFNE---ESSVVASGS--FDSSVRLWDCRSRSFEPIQI--LDE----AKD 146 (307)
T ss_pred CceEEEEEcccCeeeeecccc--cceeeEEEecC---cceEEEecc--ccceeEEEEcccCCCCccch--hhh----hcC
Confidence 5789999999998542 1100 00011222321 113555443 34567788888776666652 111 112
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeee
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~ 230 (372)
.-..+-+.+....-+.-..++..||+...+-.
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 23356667766655554556899999866544
No 166
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=25.64 E-value=5.4e+02 Score=23.83 Aligned_cols=161 Identities=11% Similarity=0.166 Sum_probs=79.7
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCCCCCC--ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc-CC
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFD--FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI-DG 188 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~--~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~-~~ 188 (372)
+||...-..+++++|+...+.....-+...+.. --.+.|.+.+. -.+++..-.....++-|+...++-+.++. +.
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k--~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK--YAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc--EEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 555555445678888877655443322211111 01234433221 23444443344566777777788877763 23
Q ss_pred CCccccccCCCcccEE--ECCEE-EEeeeCCcEEEEEec--CCCeeeccC-CC--CccccccCCCcccccceeeeccCCC
Q 017381 189 FPSMILSQSSHQEGVF--YKGSL-YFTTPEPFSIVRFDL--ENGIWETPN-DA--NDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 189 ~p~~~~~~~~~~~~v~--~~G~~-y~~~~~~~~i~~yD~--~~~~w~~i~-~p--~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
+|. .+........+. -+|.+ |......+.|.+|-. .+.+.+.+. .+ +- .|+.+ .++ .+|
T Consensus 236 lP~-dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~-----~PR~F----~i~---~~g 302 (346)
T COG2706 236 LPE-DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ-----FPRDF----NIN---PSG 302 (346)
T ss_pred Ccc-ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc-----CCccc----eeC---CCC
Confidence 333 232222222232 36754 544444455666654 344433321 11 10 24443 232 678
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCC-CEEEE
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGG-NWIEV 291 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v 291 (372)
++.++... ..+.+.|+..|..+ .-++.
T Consensus 303 ~~Liaa~q----~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 303 RFLIAANQ----KSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CEEEEEcc----CCCcEEEEEEcCCCceEEec
Confidence 87777652 24679999987653 35544
No 167
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=25.30 E-value=1.9e+02 Score=18.75 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCCeEEEEEeeecCCccceEEEEEEcCCCC
Q 017381 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGN 287 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~ 287 (372)
-+|||++.+............+.+++.+++
T Consensus 10 ~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 10 SDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred CCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 689999998754222345677888876653
No 168
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.04 E-value=6.2e+02 Score=24.31 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=43.1
Q ss_pred EEEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCC--ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc
Q 017381 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFD--FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (372)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~--~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 182 (372)
+--+-||.-+....+++.+.+||..--+ .++..+.+.. ...+.+|. ++.|-++. + .+..+++|...+.+|+
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~-SGt~L~~~--g--~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQ-SGTYLGIA--G--SDLQVYICKKKTKSWT 467 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEcC-CCCeEEee--c--ceeEEEEEecccccce
Confidence 3458899644443345669999875433 4443333222 23344543 34444433 2 4467888899999999
Q ss_pred ccc
Q 017381 183 KFD 185 (372)
Q Consensus 183 ~~~ 185 (372)
...
T Consensus 468 ~~~ 470 (506)
T KOG0289|consen 468 EIK 470 (506)
T ss_pred eee
Confidence 887
No 169
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=23.58 E-value=65 Score=24.19 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=17.9
Q ss_pred CCCCChhhhcCCCHHHHHHHHc
Q 017381 5 RREMDPAIWSRLPEDLLDHVLS 26 (372)
Q Consensus 5 ~~~~~~~~~~~LP~dll~~IL~ 26 (372)
++..++.-+..||+||-.+||.
T Consensus 42 ~~~I~pefL~ALP~diR~EVl~ 63 (108)
T PF14377_consen 42 PSQIDPEFLAALPPDIREEVLA 63 (108)
T ss_pred ccccCHHHHHhCCHHHHHHHHH
Confidence 4457777888999999999985
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.48 E-value=6.8e+02 Score=24.18 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCEEEEeeeCCcEEEEEecCCC-ee-eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 206 KGSLYFTTPEPFSIVRFDLENG-IW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~-~w-~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
+|....-+..+.+|-++|.... .- ..+. . ++......... ..|++.+.+. ...++.||.+.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-g-------H~~~v~~~~f~----p~g~~i~Sgs-----~D~tvriWd~~ 276 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-G-------HSTYVTSVAFS----PDGNLLVSGS-----DDGTVRIWDVR 276 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEec-C-------CCCceEEEEec----CCCCEEEEec-----CCCcEEEEecc
Confidence 5664444556678999998433 22 2221 2 33443333332 4677666654 24689999885
Q ss_pred CCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 284 ~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
. ++= +..+.... ......++..++.+++.....+.+.+||+.++.-
T Consensus 277 ~-~~~--~~~l~~hs----------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 277 T-GEC--VRKLKGHS----------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred C-CeE--EEeeeccC----------CceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 3 221 11111110 0011223333444444444466799999999984
No 171
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.32 E-value=57 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=25.2
Q ss_pred hhcCCCHHHHHHHHccCC-chhhhHHhhchhh
Q 017381 12 IWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKH 42 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp-~~~l~r~r~Vck~ 42 (372)
...+||.+++.+||.||| =.||..++.|-..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~et 232 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWET 232 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHH
Confidence 477999999999999998 6788777666443
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=23.08 E-value=1.7e+02 Score=26.88 Aligned_cols=51 Identities=22% Similarity=0.065 Sum_probs=28.0
Q ss_pred eeCCEEEEEeecCCeEEEEECCC-CceEECCCCCCCCCCCcccccccccc---ccCCC
Q 017381 317 WHQGMICVCCYTWPEILYYNVAR-RTWHWLPSCPSLPHKWSCGFSLNYLA---AGASG 370 (372)
Q Consensus 317 ~~~~~i~~~~~~~~~v~~yd~~~-~~w~~v~~~~~~~~~~~~~~~~~~~~---~~~~~ 370 (372)
...+.+...+...+.|-+||+++ +.|..+-..-..-- -|++++|+. |-+||
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v---NgvslnP~mpilatssG 360 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV---NGVSLNPIMPILATSSG 360 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccc---cceecCcccceeeeccC
Confidence 33444555554567799999998 66654321111111 256666543 55555
No 173
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.99 E-value=7e+02 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=15.7
Q ss_pred EEEEeeeCCcEEEEEecCCCee
Q 017381 208 SLYFTTPEPFSIVRFDLENGIW 229 (372)
Q Consensus 208 ~~y~~~~~~~~i~~yD~~~~~w 229 (372)
.++..++....|+.+|+.+.+.
T Consensus 313 n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred cEEEEecCCCcEEEEeccchHH
Confidence 5555665556799999988764
No 174
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=22.73 E-value=7.7e+02 Score=24.58 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=58.7
Q ss_pred cEEEC--CEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEE
Q 017381 202 GVFYK--GSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKL 279 (372)
Q Consensus 202 ~v~~~--G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~v 279 (372)
++.+. +.+++.+....++.+.|..+.+...+. .........+ ..+....+++. ...++.|
T Consensus 254 ~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l----------~gh~stv~~~----~~~~~~~~sgs----~D~tVkV 315 (537)
T KOG0274|consen 254 GLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL----------QGHTSSVRCL----TIDPFLLVSGS----RDNTVKV 315 (537)
T ss_pred eEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe----------cCCCceEEEE----EccCceEeecc----CCceEEE
Confidence 44444 666667776677888898887776542 2111122333 23444444432 2368999
Q ss_pred EEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 017381 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 280 w~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
|.+. .+.=..+-+ .....+.++-.++.++|.+...+.|-+||..+.+.-
T Consensus 316 W~v~-n~~~l~l~~--------------~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 316 WDVT-NGACLNLLR--------------GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCL 364 (537)
T ss_pred Eecc-CcceEEEec--------------cccccEEEEEecCCEEEEEecCceEEEEEhhhceee
Confidence 9885 233211111 011345666433434555444568999999976553
No 175
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=21.71 E-value=6.3e+02 Score=23.17 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=60.6
Q ss_pred EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC--------ccceEEE
Q 017381 208 SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--------ISTTMKL 279 (372)
Q Consensus 208 ~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~--------~~~~i~v 279 (372)
.+|.-.-.+..|.+||- +|..+..++.-.+.-+|.+..-..+.+ .+|+|||.....+.. ....++|
T Consensus 153 ~LYaadF~~g~IDVFd~---~f~~~~~~g~F~DP~iPagyAPFnIqn---ig~~lyVtYA~qd~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 153 YLYAANFRQGRIDVFKG---SFRPPPLPGSFIDPALPAGYAPFNVQN---LGGTLYVTYAQQDADRNDEVAGAGLGYVNV 226 (336)
T ss_pred eEEEeccCCCceEEecC---ccccccCCCCccCCCCCCCCCCcceEE---ECCeEEEEEEecCCcccccccCCCcceEEE
Confidence 45544434456777764 344332221100111666666556775 899999998755321 1236777
Q ss_pred EEEcCCCCEEE-EEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCCCceE
Q 017381 280 WELGCGGNWIE-VERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 280 w~l~~~~~W~~-v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
+.+ +++-.+ +.+-. . +-..+.-......++ -.+.|.+-....+.|-+||+.++++.
T Consensus 227 Fd~--~G~l~~r~as~g--~----LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 227 FTL--NGQLLRRVASSG--R----LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred EcC--CCcEEEEeccCC--c----ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 754 344222 21100 0 000000000011111 23456776666788999999988764
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.54 E-value=5.7e+02 Score=22.61 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=21.3
Q ss_pred CCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEe
Q 017381 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVER 293 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~ 293 (372)
.-|.++.|++ ....+.+|+-+.+++|+++..
T Consensus 266 ~sGn~LaVs~-----GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 266 LSGNILAVSG-----GDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ccccEEEEec-----CCcEEEEEEeCCCCcEEEccc
Confidence 3455555544 246789998877788998864
No 177
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.29 E-value=6e+02 Score=22.79 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=22.6
Q ss_pred EEeeCCEEEEEeecCCeEEEEECCC----CceEECC
Q 017381 315 CFWHQGMICVCCYTWPEILYYNVAR----RTWHWLP 346 (372)
Q Consensus 315 ~~~~~~~i~~~~~~~~~v~~yd~~~----~~w~~v~ 346 (372)
++..+|.||+..-..+.|.++|+.+ +..+.+.
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence 4445677888876777899999987 4454443
No 178
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=21.09 E-value=7.2e+02 Score=23.64 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=17.3
Q ss_pred eCCEEEEEeecCCeEEEEECCCCceEECCC
Q 017381 318 HQGMICVCCYTWPEILYYNVARRTWHWLPS 347 (372)
Q Consensus 318 ~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~ 347 (372)
.++.+++.+. .+.+..-...-++|++++.
T Consensus 337 ~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGG-SGILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEEC-CCcEEEeCCCCcceeEccc
Confidence 4455666552 3445555556679998764
No 179
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.52 E-value=5.5e+02 Score=22.00 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=41.2
Q ss_pred ceEEEEecCc-EEEEecCCCceEEEEeccccceeccC-CC-C--CC------CCceeEEEE-eCCCCEEEEEEeecCCCc
Q 017381 102 AATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTID-FP-T--YP------FDFELLTLV-STPSGYKIFMLFAKSFPN 169 (372)
Q Consensus 102 ~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP-~~-~--~~------~~~~~~~~~-~~~~~ykvv~~~~~~~~~ 169 (372)
...++.+.+. |+++.. .+.++|||-.+++-..-| +. | .. .....+... -...+.=||.+. ..
T Consensus 14 ~~~~l~~~~~~Ll~iT~--~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng 87 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITS--SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NG 87 (219)
T ss_pred ceEEEEeCCCEEEEEeC--CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CC
Confidence 3444566666 455554 589999999887743322 11 1 10 111111111 111122233332 24
Q ss_pred eEEEEECCCCCccccc
Q 017381 170 YAFVYDSTDQSWSKFD 185 (372)
Q Consensus 170 ~~~vy~s~~~~W~~~~ 185 (372)
..+.|+..-++|..+.
T Consensus 88 ~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 88 DSYSYSPDLGCWIRVS 103 (219)
T ss_pred CEEEeccccceeEEec
Confidence 6799999999998876
No 180
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=20.36 E-value=64 Score=25.70 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCchhhhHHhhchhhhhhc
Q 017381 18 EDLLDHVLSFLPPKMLLKLRSTCKHFNSL 46 (372)
Q Consensus 18 ~dll~~IL~rLp~~~l~r~r~Vck~W~~~ 46 (372)
-|++++=|..|.-.+.+||++|-|.+.++
T Consensus 109 Ge~Vm~~L~~lD~VAYVRFASVYr~F~dv 137 (147)
T TIGR00244 109 GQMVMQYLKKLDEVAYIRFASVYRSFQDI 137 (147)
T ss_pred HHHHHHHHhhcCcchhhhhhhhcCCCCCH
Confidence 36777778888999999999999999876
Done!