BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017382
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 149/301 (49%), Gaps = 33/301 (10%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
R+ + A P+ E V+ +G AVPL + EL H++ DS S+VL+ D
Sbjct: 70 RVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--- 126
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
+PP V +++ A DG DPAL+VYTSGTTG PKG
Sbjct: 127 -------------LPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGA 173
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
V +++ + L +AW++T D + LPL HVHGL +L PL G +V + +FS
Sbjct: 174 VIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFST 233
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM 308
G + + T GVPTMY R+ + A D EL RL+
Sbjct: 234 EGAARELNDG-----------ATMLFGVPTMYHRIAETLPA-DPELAKALAGA----RLL 277
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSM 368
+ GS+ALP+ ++ TG R++ERYGMTE +M S G +AGTVG PLPGV++ +
Sbjct: 278 VSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRL 337
Query: 369 I 369
+
Sbjct: 338 V 338
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 137/302 (45%), Gaps = 20/302 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+K GA + P S S+A + +D A I+YTSGTTG+ K
Sbjct: 112 DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSK 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G +H ++ + L + W +T D +H LP++H HGLF A L+A + F+PKF
Sbjct: 172 GAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q R
Sbjct: 232 DPDKILDLXARA------------TVLXGVPTFYTRLLQS--------PRLTKETTGHXR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
L + GS+ L ++W TGH +LERYG TE SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 SM 368
+
Sbjct: 332 RV 333
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 20/299 (6%)
Query: 67 CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
G R+ + S E + L T +G + +PL +Y EL + + D++ +V+ R
Sbjct: 52 VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ + +A+ GA + P S S+A + +D A I+YTSGTTG+
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
G + +H ++ + L + W +T D +H LP++H HGLF A L+A ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
I + T GVPT YTRL+Q +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
L + GS+ L ++W TGH +LERYGMTE M SNP G R G VG LPGV
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 55/308 (17%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++ S EF G G +AVP+ E+ ++ DS +V+
Sbjct: 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
V+ + +++ PP TV D S AE++ ++PA+
Sbjct: 128 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 174
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
I+YTSGTTG PKGVVHTH+S+ + + D+ L LP+ HV L + + +
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
G T+ MP+F +W E E + VP + + R + + +D
Sbjct: 235 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 283
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
R + G + +P +++ + E + G+ L E G +++ +
Sbjct: 284 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS-EDA 332
Query: 348 LRGARKAG 355
LR A AG
Sbjct: 333 LRKAGSAG 340
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 29/295 (9%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ ++ S EF G G +AVP+ E+ ++ DS +V+
Sbjct: 54 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
V+ + +++ ++ + S + + E G+D I+YTSGTTG PKG
Sbjct: 114 VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKG 173
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
VVHTH+S+ + + D+ L LP+ HV L + + + G T+ MP+F
Sbjct: 174 VVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFD 232
Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDTELQXXXXXXXKQL 305
+W E E + VP + + R + + +D
Sbjct: 233 ATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA----------PDF 272
Query: 306 RLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNPLRGARKAG 355
R + G + +P +++ + E + G+ L E G +++ + LR A AG
Sbjct: 273 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS-EDALRKAGSAG 326
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
S EFV LG G I +EL S ++++ Y E +++ A +S
Sbjct: 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 138 AKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK- 193
K + P+ SE T D+++A ++D +D + Y+SGTTG PKGV+ THK
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVD-ISPDDVVALPYSSGTTGLPKGVMLTHKG 202
Query: 194 ---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---S 247
S+ QV + S D L LP+ H++ L + +L L GA + MPKF S
Sbjct: 203 LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 248 VRGIWQRWRES 258
+ G+ ++++ S
Sbjct: 263 LLGLIEKYKVS 273
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFN 228
+D A +Y+SG+TGKPKG VHTH ++ ++ + D L +GL N
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242
Query: 229 ALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
L PL GAT M + + I+ R E P T F GVPT+Y ++
Sbjct: 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRP----------TVFYGVPTLYANMLVS- 291
Query: 288 EAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
+R+ ALP + +++ G +L+ G TE + +
Sbjct: 292 -------PNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN 344
Query: 348 LRGARKAGTVGNPLPGVQVSM 368
GA + GT G P+PG ++ +
Sbjct: 345 RAGAVEYGTTGRPVPGYEIEL 365
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP--ESELL----HVMHDSDISMVLS 121
G R+ ++ P + LG ++GCIAVP+ YP + +LL ++ +S +VL
Sbjct: 65 GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLX 121
Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
D+ + + KF IP + + E+ ++S + + + D A + YTSG+
Sbjct: 122 IADHIKKFTADELNTNPKFLKIPAI---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
T PKGV +H ++ + + ++ LP HH GL +L P+Y G
Sbjct: 179 TXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGG 234
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
G G+ + + K S E V G+LG +G +P+ PE + +++ DS + +L+ ++
Sbjct: 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570
Query: 125 YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
+E + F + T F++ ++ DPA I+YTSGTTGK
Sbjct: 571 MKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGK 621
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFL 215
PKG + TH +I V+ + + ++ D FL
Sbjct: 622 PKGNITTHANIQGLVKHV-DYMAFSDQDTFL 651
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
EFV L F G A + +E+ S+ ++++ Y + ++ + + G
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV 184
Query: 140 FSLIP-----PVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYTSGTTGKPKGVV 189
I P+P T QS E + +D + Y+SGTTG PKGV+
Sbjct: 185 IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 190 HTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
THK S+ QV + S D L LP+ H++ L + +L L GA + MPK
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304
Query: 246 FSVR 249
F +
Sbjct: 305 FEIN 308
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G R+ I+++ E + + G I +P+ E+ V+ D S+V++ DYR+
Sbjct: 56 GDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115
Query: 128 VLQNV-ASKSGAKFSL--------IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178
++ V S G K + P +++S+T F + DG +I++T
Sbjct: 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-FSAPEFGAADG------FVIIHT 168
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
+ G+P+G + + ++ L +AW T AD L LPL HV GL L GA
Sbjct: 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228
Query: 239 TV---EFMPKFSVRGI 251
+V +F P + R I
Sbjct: 229 SVIAAKFDPAQAARDI 244
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G +GI+ + S + G+L +G VP+ + YP+ + +++ DS M+L+ +
Sbjct: 87 GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 146
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG------QRGEDPALIVYTS 179
++ N+ + + +F++ + +G + D A ++YTS
Sbjct: 147 VHLIHNI---------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 191
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF 214
GTTG PKG + HK I + T D+
Sbjct: 192 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI 226
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLS 121
G G R+ I A E+V LG +G IAVPL++ + V+ DS +L+
Sbjct: 79 GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILT 138
Query: 122 TED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIVYT 178
T +V+Q+VA + G P E + D + E P A + YT
Sbjct: 139 TSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYT 191
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNALL 231
SG+T P GVV +H+++ + L + + D + LP +H GL +
Sbjct: 192 SGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPPPNSALVSWLPFYHDXGLVIGIC 250
Query: 232 APLYAG 237
AP+ G
Sbjct: 251 APILGG 256
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVL 120
G G R+ I A E+V LG +G IAVPL++ + V+ DS +L
Sbjct: 78 CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAIL 137
Query: 121 STED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIVY 177
+T +V+Q+VA + G P E + D + E P A + Y
Sbjct: 138 TTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQY 190
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNAL 230
TSG+T P GVV +H+++ + L + + D + LP +H GL +
Sbjct: 191 TSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249
Query: 231 LAPLYAG 237
AP+ G
Sbjct: 250 CAPILGG 256
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 130/326 (39%), Gaps = 50/326 (15%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 82 RIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H+++ + + A + +Q L +P HH G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRALAVR---FSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
F L L +G V M +F ++ R + Y + + +F T LI
Sbjct: 255 FTT-LGYLISGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFLAKST----LIDK 308
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
Y+ + E+ K++ + LP G R + YG+TE AI
Sbjct: 309 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 355
Query: 346 NPLRGARKAGTVGNPLPGVQVSMILL 371
+G K G VG +P + ++ L
Sbjct: 356 ITPKGDDKPGAVGKVVPFFEAKVVDL 381
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 47/200 (23%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVL 120
G R+ ++A+ S EFV ++G +AVPLA+ ++L ++ + ++
Sbjct: 73 GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAII 132
Query: 121 STEDYREVLQNVASK--------SGAKFSLIP--------PVPNVSSETTVFDQSQAEKM 164
+ +++ ++ N A+ S A F +P PVPN
Sbjct: 133 TGDEWLPLV-NAATHDNPELHVLSHAWFKALPEADVALQRPVPN---------------- 175
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHV 223
D A + YTSG+T P+GV+ TH+ + A ++ ++ + + D+ + LP +H
Sbjct: 176 ------DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 224 HGLFNALLAPLYAGATVEFM 243
GL LL P+ +V+++
Sbjct: 230 XGLVGFLLTPVATQLSVDYL 249
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G +G+ S ++V + W VP+ Y EL H+++DS+ + ++ E
Sbjct: 77 GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 128 VLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
+ V K+G + ++ N SE E + ED ALI YT GTTG PK
Sbjct: 137 NFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPK 196
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
GV TH ++ A L A + D + C P H
Sbjct: 197 GVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFH 232
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 156 FDQSQAEKMDGQRGEDPAL--IVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSA 211
++++ E+ D R + A + YT+GTTG PKGVV++H++ + + L + +
Sbjct: 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271
D L +P+ HV+ A L V P+ + + + GE +T
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD----------GEGVT 269
Query: 272 AFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRL 331
GVPT++ L E+ L K LR ++ G SA P ++ ++E + G +
Sbjct: 270 FTAGVPTVWLALADYLESTGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEV 320
Query: 332 LERYGMTE 339
+ YG+TE
Sbjct: 321 RQGYGLTE 328
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 136/343 (39%), Gaps = 44/343 (12%)
Query: 46 NDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE 104
DLK S+K N V G G G + + K ++F +LG G IAVP
Sbjct: 90 KDLKYYSDKAAN--FFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 105 SELLHVMHDSDISMV--LSTEDYREVLQNVASKSG------AKFS------LIPPVPNVS 150
++++ + + + M+ ++ +D E + ++ G AK I +
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELE 207
Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
+ +F++ E + ED L+ ++SGT G PK V H + + LT +
Sbjct: 208 ESSPIFERPTGEV--STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNV 263
Query: 211 ADQFLHCLPLHHVHG--LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRA 266
D LH G ++ L AG V +F + + ++ ++
Sbjct: 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK--------ASKY 315
Query: 267 GEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETI 326
G +T F PT+Y LI+ + L+ + L V ++
Sbjct: 316 G--VTTFCAPPTIYRFLIK---------EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 327 TGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMI 369
TG +L+E +G TE V+ I+ K G++G P PG ++ ++
Sbjct: 365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELM 407
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
F L L G V M +F ++ R + Y I + VPT++ +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
LI Y+ + E+ K++ + LP G R + YG+TE
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
AI G K G VG +P + ++ L
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 376
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 82 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 142 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
F L L G V M +F ++ R + Y I + VPT++ +
Sbjct: 255 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 303
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
LI Y+ + E+ K++ + LP G R + YG+TE
Sbjct: 304 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 350
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
AI G K G VG +P + ++ L
Sbjct: 351 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 381
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 60/331 (18%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
RI + ++ S +F VLG F G P Y E ELL+ M+ S ++V ++ + +
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
NV K +I + + S+T F++ R +
Sbjct: 137 LNVQK----KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGL 226
ALI+ +SG+TG PKGV H++ + + A + +Q L +P HH G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----T 281
F L L G V M +F ++ R + Y I + VPT++ +
Sbjct: 250 FTT-LGYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 298
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
LI Y+ + E+ K++ + LP G R + YG+TE
Sbjct: 299 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 345
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVSMILL 371
AI G K G VG +P + ++ L
Sbjct: 346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDL 376
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 45/280 (16%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYR 126
G R+ + P E + +L G VP+ L P S ++ DS S ++ +
Sbjct: 85 GDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
V + V + + A+ P P + G ED A ++YTSGTTG PK
Sbjct: 145 AVTRVVRTAAVAECKDAEPGPVTGAP-------------GPGAEDMAYVIYTSGTTGNPK 191
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFL--HCLPLH----HVHGLFNALLAPLYAGATV 240
GV H ++ A + ++++ D++L H L + G F+ GA +
Sbjct: 192 GVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFS-------TGAEL 244
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXX 300
+P ++ R Q V +R +T PT + L TE
Sbjct: 245 VVLPHWAARTPEQ----YLAVIIDR---GVTVINQTPTAFLAL--------TEAAVRGGR 289
Query: 301 XXKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGM 337
LR ++ G L P+++ W G RL+ YG+
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGI 329
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 58/316 (18%)
Query: 47 DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
+L S++ N VL+G CG R+ +V E+ +LG +G I +P +
Sbjct: 78 ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE 162
+++L+ + S +++ ++ + + VAS+ P++ + V ++S
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE----------CPSLRIKLLVSEKSCDG 183
Query: 163 KMDGQR---------------GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE 207
++ ++ ++ + I +TSGT+G PK H++ S+ + +M W
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWT 242
Query: 208 YTSADQFLHCLP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGN 264
A + + + + +L+ P GA V +PKF I + SYP
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---- 297
Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQW 323
I + G P +Y L+Q Q L+ + G S LP ++ W
Sbjct: 298 -----IKSMMGAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENW 342
Query: 324 ETITGHRLLERYGMTE 339
TG + E YG TE
Sbjct: 343 RAQTGLDIRESYGQTE 358
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 58/316 (18%)
Query: 47 DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
+L S++ N VL+G CG R+ +V E+ +LG +G I +P +
Sbjct: 78 ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE 162
+++L+ + S +++ ++ + + VAS+ P++ + V ++S
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE----------CPSLRIKLLVSEKSCDG 183
Query: 163 KMDGQR---------------GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE 207
++ ++ ++ + I +TSGT+G PK H++ S+ + +M W
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWT 242
Query: 208 YTSADQFLHCLP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGN 264
A + + + + +L+ P GA V +PKF I + SYP
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---- 297
Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQW 323
I + G P +Y L+Q Q L+ + G S LP ++ W
Sbjct: 298 -----IKSMMGAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENW 342
Query: 324 ETITGHRLLERYGMTE 339
TG + E YG TE
Sbjct: 343 RAQTGLDIRESYGQTE 358
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 31/223 (13%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL-PVMQQ--WETITGHR 330
T + + + E D LR++ GS+ P+ P + W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRIL--GSAGEPINPEAWEWYWKKIGKEK 406
Query: 331 --LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
+ Q E M+ EDP I+YTSG+TGKPKGV+HT + ++Y D +
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
+ V G L PL GAT E +P + R V+ ++ TA
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
T + + + E D LR++ G P W+ I +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVSMI 369
+++ + TE + PL GA KAG+ P GVQ +++
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV 449
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
+R+G+ S + + + W + + +E+ + M D+ ++ T
Sbjct: 49 SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 129 LQNVASKSGAKFSLIPPVPN------------VSSETTVFDQSQAEKMDGQRG-EDPALI 175
+ S +F+ N S+ET V +S + ++ +D A I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
++TSGTTG K V T ++ A E+ + +L LP++H+ GL + LL +
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVI 227
Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
G TV + KF+ I + E IT + VP L+Q
Sbjct: 228 EGFTVRIVDKFNAEQILTMIK----------NERITHISLVPQTLNWLMQ 267
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 126/328 (38%), Gaps = 52/328 (15%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI + ++ EF V+ F G P Y EL+H + S ++V S++ +
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
+ V +++ V +T + F S + ++ R E ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
+ +SG+TG PKGV TH++I V + A + +Q L +P HH G+F
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
L L G V + KF + ++ T+ VPT++ + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
Y+ + E+ K++ + LP G R + YG+TE A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVSMILL 371
I G K G G +P + +I L
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDL 378
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 126/328 (38%), Gaps = 52/328 (15%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
RI + ++ EF V+ F G P Y EL+H + S ++V S++ +
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
+ V +++ V +T + F S + ++ R E ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------FLHCLPLHHVHGLFNA 229
+ +SG+TG PKGV TH++I V + A + +Q L +P HH G+F
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
L L G V + KF + ++ T+ VPT++ + L+
Sbjct: 255 -LGYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
Y+ + E+ K++ + LP G R + YG+TE A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVSMILL 371
I G K G G +P + +I L
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDL 378
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
T + +F
Sbjct: 220 ALDGTYVVIEEF 231
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
T + +F
Sbjct: 220 ALDGTYVVVEEF 231
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
T + +F
Sbjct: 220 ALDGTYVVVEEF 231
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
T + +F
Sbjct: 220 ALDGTYVVVEEF 231
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
R+ +VA S + V +L G + L +EL ++ +++ +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
S R + + G +S PP+ + E PA I
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
YTSGTTG PK + ++ +++V ++ + + L +PL+HV G F L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATVEFMPKF 246
T + +F
Sbjct: 220 ALDGTYVVVEEF 231
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 81/213 (38%), Gaps = 53/213 (24%)
Query: 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE----- 123
RI + ++ EF V+ F G P Y EL+H + S ++V S++
Sbjct: 78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 124 ---------------------DYR--EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160
DYR + L ++ PP SS TV
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN------TPPGYQASSFKTV----- 186
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ------F 214
+ R E ALI+ +SG+TG PKGV TH++I V + A + +Q
Sbjct: 187 ----EVDRKEQVALIMNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAV 239
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
L +P HH G+F L L G V + KF
Sbjct: 240 LTVVPFHHGFGMFTT-LGYLICGFRVVMLTKFD 271
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 32/220 (14%)
Query: 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
G I + ++ S +F V G F G P Y E EL + + S ++V ++
Sbjct: 107 GLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 126 REVLQNVASKSGAKFSLIPPVPNV----SSETTVFDQSQAEKMDGQ-------------- 167
+ + V K +P + + S E + QS ++
Sbjct: 167 LQKILGVQKK-------LPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDS 219
Query: 168 --RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHH 222
R ALI+ +SG+TG PKGV THK+I + + + L +P HH
Sbjct: 220 FDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHH 279
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVN 262
G+F L L G + M +F ++ R + Y +
Sbjct: 280 GFGMFTT-LGYLTCGFRIVLMYRFEEE-LFLRSLQDYKIQ 317
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNA 229
PA I YTSGTTG PK + ++ +++V + + + L PL+HV G F
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAV 214
Query: 230 LLAPLYAGATVEFMPKF 246
L+A L T + +F
Sbjct: 215 LVAALALDGTYVVVEEF 231
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
+++ +A + SG +P+ + +L ++ + S++++ E++ ++ ++ S
Sbjct: 64 TYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSL 123
Query: 138 AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
++ E+ + E+ +G+D I++TSGTTG+PKGV +H ++
Sbjct: 124 SEI-----------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPLH-HVHG-- 225
ED A +++TSG+TG+PKGV+ H+++ L + + D+ FL C P+ G
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPVSWDAFGLE 271
Query: 226 LFNALL 231
LF ALL
Sbjct: 272 LFGALL 277
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPL 220
ED A +++TSG+TG+PKGV+ H+++ L + + D+ FL C P+
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPV 263
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 35/154 (22%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
E + LG +G +P+ LS P + Q +A SGAK
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRV----------------------QRIAENSGAK 100
Query: 140 FSL------IPPVP-NVSSETTVFDQSQAEKMD------GQRGEDPALIVYTSGTTGKPK 186
L + +P + SE + D K + +G++ I+YTSG+TG PK
Sbjct: 101 LLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK 160
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPL 220
GV T+ + + + E + + FL+ P
Sbjct: 161 GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPF 194
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSG 137
E + LG +G +P+ LS P + + +S ++LS ++ + S+
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDN 122
Query: 138 AK---FSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
K F+ PN E V +G++ I+YTSG+TG PKGV T+
Sbjct: 123 LKDIFFTHKGNTPN--PEHAV------------KGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPL 220
+ + + E + + FL+ P
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPF 194
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 170 EDPALIVYTSGTTGKPKGVVHT 191
EDP ++YTSG+TG PKGV H+
Sbjct: 262 EDPLFLLYTSGSTGAPKGVQHS 283
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 25/175 (14%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
++ A + G+TG PK + TH D V+ E S + L LP H L +
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSS 249
Query: 229 -ALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284
L L+AG V P + I QR + + + VP+ +
Sbjct: 250 PGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQ-------------VNMASLVPSAVIMWL 296
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
+ ++Q L+L+ G ++ P + +Q + +L + +GM E
Sbjct: 297 EKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE 343
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
G I + S A ++G SG VP+ P ++ DS + ++ +
Sbjct: 79 GRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPNDRKSFLLRDSRAAXAFVCDNNFD 138
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD---QSQAEKMDGQRGED---------PALI 175
++ +PP ET V D QS E + Q D A +
Sbjct: 139 GVE------------LPP------ETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYL 180
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
+YTSG+TG PKGV + ++ + ++AW
Sbjct: 181 LYTSGSTGTPKGVRVSRHNLSS----FSDAW 207
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 20/178 (11%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
EF + + G + V S+ SE+ + ++ I S DYR + + V S
Sbjct: 87 EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPN--VSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
K +P + N V+ E F ++ K+ + D A + + G+TG K
Sbjct: 147 K-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKL 199
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMP 244
+ TH ++ E + +L LP+ H + L + +L LYAG V P
Sbjct: 200 IPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
>pdb|2KBB|A Chain A, Nmr Structure Of The Talin Rod Domain, 1655-1822
pdb|2KGX|A Chain A, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 174
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 175 IVYTSGTTG-KPKGVVHTHKSIDAQVQMLTEAWE 207
++YT+ G PK HT ++++ VQM+TEA E
Sbjct: 127 LLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVE 160
>pdb|2W1J|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
pdb|2W1J|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
Length = 212
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRLIQ 285
P+YAG E + + G S P+ GN ITA TG+PT M+T L +
Sbjct: 79 PVYAGTAEEVLQQ----GAGHLEGTSLPIGGNSTHAVITAHTGLPTAKMFTDLTK 129
>pdb|4F7G|B Chain B, Crystal Structure Of Talin Autoinhibition Complex
Length = 216
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 175 IVYTSGTTG-KPKGVVHTHKSIDAQVQMLTEAWE 207
++YT+ G PK HT ++++ VQM+TEA E
Sbjct: 144 LLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVE 177
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
++ A + GTTG PK + TH V+ E ++T ++L +P H + + +
Sbjct: 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSS 242
Query: 229 -ALLAPLYAGATV 240
L AG TV
Sbjct: 243 PGSLGVFLAGGTV 255
>pdb|2WTS|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
pdb|2WTS|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
Length = 213
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRLIQ 285
P+YAG E + + G S P+ GN ITA TG+PT M+T L +
Sbjct: 80 PVYAGTAEEVLQQ----GAGHLEGTSLPIGGNSTHAVITADTGLPTAKMFTDLTK 130
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 173 ALIVYTSGTTGKPKGVVHTHKSI 195
A I ++SGTTG+PK + TH I
Sbjct: 167 AYINFSSGTTGRPKAIACTHAGI 189
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
EF + + G + V S+ SE+ + ++ I S DYR + + V S
Sbjct: 87 EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPN--VSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
K +P + N V+ E F ++ K+ + D A + + G+TG K
Sbjct: 147 K-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKL 199
Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMP 244
+ TH ++ E + +L LP H + L + +L LYAG V P
Sbjct: 200 IPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSP 257
>pdb|3O0P|A Chain A, Pilus-Related Sortase C Of Group B Streptococcus
Length = 216
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
P++AG++ E + K G S P+ GN ITA +G+P
Sbjct: 83 PIFAGSSQEVLSK----GAGHLEGTSLPIGGNSTHTVITAHSGIP 123
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS 141
+ LG+ +G +P+ LS P + ++ S +++ + V +
Sbjct: 66 IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLS--IDAVGQQ------ 117
Query: 142 LIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL-IVYTSGTTGKPKGV 188
+ VS+E + ++ + D E I+YTSG+TG PKGV
Sbjct: 118 ----IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGV 161
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
+++TSG+TG PK + T + A +A + L CL + ++ GL
Sbjct: 41 FVLHTSGSTGXPKPITVTRAQLAASAAXTGKALSLGPGTRALVCLNVGYIAGL 93
>pdb|4G1J|A Chain A, Sortase C1 Of Gbs Pilus Island 1
pdb|4G1J|B Chain B, Sortase C1 Of Gbs Pilus Island 1
Length = 222
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 86 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 134
>pdb|3RBI|A Chain A, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBI|B Chain B, The Type Iii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|A Chain A, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3RBK|B Chain B, The Type Ii Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TB7|A Chain A, The Type I Crystal Structure Of Streptococcus Agalactiae
Sortase C1
pdb|3TBE|A Chain A, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|B Chain B, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|C Chain C, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|D Chain D, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|E Chain E, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
pdb|3TBE|F Chain F, The Crystal Structure Of The Complex Of Streptococcus
Agalactiae Sortase C1 And Mtset
Length = 230
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 97 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 145
>pdb|3RBJ|A Chain A, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
pdb|3RBJ|B Chain B, Crystal Structure Of The Lid-Mutant Of Streptococcus
Agalactiae Sortase C1
Length = 230
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT--MYTRL 283
P+YAG+ E + RG+ S PV G +TA G+PT ++T L
Sbjct: 97 PIYAGSAEENLQ----RGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,172,421
Number of Sequences: 62578
Number of extensions: 382234
Number of successful extensions: 818
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 73
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)