Query 017382
Match_columns 372
No_of_seqs 144 out of 2006
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 4.3E-52 1.5E-56 405.3 29.9 336 1-371 22-371 (536)
2 3r44_A Fatty acyl COA syntheta 100.0 1.5E-51 5.2E-56 399.6 28.6 334 1-372 16-354 (517)
3 4fuq_A Malonyl COA synthetase; 100.0 6.7E-52 2.3E-56 400.8 25.9 331 4-371 3-336 (503)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.5E-51 8.6E-56 401.0 28.6 336 1-371 19-372 (549)
5 3rix_A Luciferase, luciferin 4 100.0 2.4E-51 8.2E-56 401.2 28.0 336 1-372 20-377 (550)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 7.4E-51 2.5E-55 396.7 30.1 334 1-372 25-369 (539)
7 3etc_A AMP-binding protein; ad 100.0 9.3E-51 3.2E-55 398.8 29.5 332 4-372 59-410 (580)
8 1v25_A Long-chain-fatty-acid-C 100.0 2.4E-50 8.4E-55 393.2 31.0 334 1-372 18-372 (541)
9 3o83_A Peptide arylation enzym 100.0 1.3E-50 4.5E-55 395.4 28.4 337 1-372 30-378 (544)
10 2d1s_A Luciferase, luciferin 4 100.0 3.3E-50 1.1E-54 392.8 30.5 333 2-371 26-378 (548)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 6E-50 2E-54 387.4 29.6 330 1-372 2-338 (504)
12 3t5a_A Long-chain-fatty-acid-- 100.0 3.4E-50 1.2E-54 387.0 26.1 330 1-372 24-410 (480)
13 1pg4_A Acetyl-COA synthetase; 100.0 1.1E-49 3.8E-54 396.3 30.4 337 3-372 78-452 (652)
14 3ivr_A Putative long-chain-fat 100.0 3.1E-49 1.1E-53 382.9 31.3 328 1-372 6-338 (509)
15 2v7b_A Benzoate-coenzyme A lig 100.0 1.8E-49 6.1E-54 386.4 29.7 334 3-372 26-369 (529)
16 3fce_A D-alanine--poly(phospho 100.0 1.6E-50 5.4E-55 392.3 22.0 327 1-372 1-336 (512)
17 3c5e_A Acyl-coenzyme A synthet 100.0 2.9E-49 9.8E-54 387.6 29.0 332 3-372 40-391 (570)
18 4dg8_A PA1221; ANL superfamily 100.0 6.5E-49 2.2E-53 388.0 31.2 316 2-372 28-350 (620)
19 1ry2_A Acetyl-coenzyme A synth 100.0 1.9E-49 6.4E-54 395.0 27.3 337 2-371 83-458 (663)
20 3e7w_A D-alanine--poly(phospho 100.0 1.7E-49 5.9E-54 384.8 25.7 324 1-372 1-335 (511)
21 3tsy_A Fusion protein 4-coumar 100.0 4.5E-49 1.5E-53 409.0 29.7 337 1-372 61-419 (979)
22 3ipl_A 2-succinylbenzoate--COA 100.0 1.6E-49 5.6E-54 384.2 23.5 329 1-372 1-344 (501)
23 1amu_A GRSA, gramicidin synthe 100.0 7.2E-49 2.5E-53 384.2 26.7 319 1-372 39-363 (563)
24 4gr5_A Non-ribosomal peptide s 100.0 1.5E-48 5.1E-53 382.9 28.5 318 2-372 76-400 (570)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 5.8E-49 2E-53 380.3 23.8 318 1-372 22-341 (505)
26 3rg2_A Enterobactin synthase c 100.0 5.3E-48 1.8E-52 382.4 29.7 337 1-372 27-373 (617)
27 3l8c_A D-alanine--poly(phospho 100.0 2E-48 6.9E-53 378.3 22.6 325 1-372 4-339 (521)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.7E-48 9.3E-53 383.0 23.6 334 1-372 11-389 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 4.1E-47 1.4E-51 373.6 29.2 332 2-372 22-402 (576)
30 3ite_A SIDN siderophore synthe 100.0 8.6E-47 2.9E-51 370.1 20.0 325 1-372 20-364 (562)
31 2vsq_A Surfactin synthetase su 100.0 4.4E-45 1.5E-49 388.2 27.9 322 2-372 465-794 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 7.1E-30 2.4E-34 235.7 12.7 179 169-370 36-214 (358)
33 3hgu_A EHPF; phenazine, antibi 99.9 1.3E-27 4.5E-32 221.8 14.4 180 167-371 88-302 (369)
34 3qov_A Phenylacetate-coenzyme 99.9 5E-27 1.7E-31 222.7 15.7 183 170-371 86-272 (436)
35 2y27_A Phenylacetate-coenzyme 99.9 9.9E-26 3.4E-30 213.9 17.2 186 167-372 87-278 (437)
36 2y4o_A Phenylacetate-coenzyme 99.9 9.5E-26 3.2E-30 214.4 16.2 185 167-371 89-279 (443)
37 4eql_A 4-substituted benzoates 91.4 0.42 1.4E-05 45.9 7.4 31 167-197 90-121 (581)
38 2y27_A Phenylacetate-coenzyme 91.0 1.6 5.5E-05 40.2 10.9 90 25-132 108-199 (437)
39 3qov_A Phenylacetate-coenzyme 90.8 2.2 7.5E-05 39.3 11.6 90 25-132 104-195 (436)
40 2y4o_A Phenylacetate-coenzyme 90.7 1.8 6.1E-05 40.0 10.9 90 25-132 110-201 (443)
41 3ipl_A 2-succinylbenzoate--COA 86.4 9.2 0.00032 35.7 12.8 99 13-132 160-268 (501)
42 3ivr_A Putative long-chain-fat 82.8 15 0.00051 34.4 12.5 97 168-285 19-119 (509)
43 1mdb_A 2,3-dihydroxybenzoate-A 82.6 12 0.00042 35.3 11.9 98 14-132 180-289 (539)
44 3g7s_A Long-chain-fatty-acid-- 81.7 14 0.00047 35.0 11.9 105 168-285 32-140 (549)
45 3o83_A Peptide arylation enzym 81.2 16 0.00055 34.6 12.2 97 14-131 189-297 (544)
46 2d1s_A Luciferase, luciferin 4 80.1 13 0.00045 35.2 11.2 97 16-131 192-299 (548)
47 3ni2_A 4-coumarate:COA ligase; 79.4 11 0.00037 35.7 10.3 100 167-285 34-137 (536)
48 3hgu_A EHPF; phenazine, antibi 78.6 8.7 0.0003 34.2 8.9 86 25-129 109-219 (369)
49 3rix_A Luciferase, luciferin 4 78.2 6.7 0.00023 37.3 8.4 101 169-285 34-138 (550)
50 1v25_A Long-chain-fatty-acid-C 76.7 20 0.00069 33.8 11.3 100 168-284 31-134 (541)
51 3t5a_A Long-chain-fatty-acid-- 74.3 22 0.00076 32.7 10.8 106 168-286 37-149 (480)
52 3rg2_A Enterobactin synthase c 73.7 46 0.0016 32.0 13.1 98 14-132 182-291 (617)
53 3fce_A D-alanine--poly(phospho 73.5 12 0.00042 35.0 8.8 96 14-129 142-249 (512)
54 3kxw_A Saframycin MX1 syntheta 72.6 15 0.0005 35.1 9.3 98 14-131 165-276 (590)
55 3r44_A Fatty acyl COA syntheta 72.5 27 0.00092 32.7 10.9 96 14-131 168-274 (517)
56 3e7w_A D-alanine--poly(phospho 71.4 13 0.00046 34.7 8.5 96 14-129 141-248 (511)
57 4fuq_A Malonyl COA synthetase; 71.2 22 0.00076 33.2 10.0 96 168-281 13-112 (503)
58 3c5e_A Acyl-coenzyme A synthet 70.6 33 0.0011 32.6 11.1 101 168-284 56-161 (570)
59 1amu_A GRSA, gramicidin synthe 70.5 26 0.0009 33.3 10.5 94 168-282 52-149 (563)
60 1t5h_X 4-chlorobenzoyl COA lig 70.3 25 0.00086 32.7 10.2 97 168-283 15-117 (504)
61 4gs5_A Acyl-COA synthetase (AM 69.6 11 0.00036 33.7 7.0 94 14-130 35-138 (358)
62 3etc_A AMP-binding protein; ad 66.3 26 0.0009 33.4 9.5 95 168-278 69-167 (580)
63 1pg4_A Acetyl-COA synthetase; 66.2 31 0.0011 33.4 10.2 95 168-277 89-187 (652)
64 1ry2_A Acetyl-coenzyme A synth 63.6 38 0.0013 32.9 10.2 97 167-278 94-195 (663)
65 4gr5_A Non-ribosomal peptide s 63.3 31 0.0011 32.7 9.4 90 168-278 88-181 (570)
66 2v7b_A Benzoate-coenzyme A lig 63.0 29 0.00098 32.6 9.0 96 168-284 36-135 (529)
67 3nyq_A Malonyl-COA ligase; A/B 62.1 65 0.0022 30.0 11.2 96 14-131 153-259 (505)
68 4b2g_A GH3-1 auxin conjugating 59.9 3.2 0.00011 40.0 1.6 32 166-197 95-127 (609)
69 3tsy_A Fusion protein 4-coumar 58.5 23 0.00079 36.3 7.9 98 167-283 73-174 (979)
70 4epl_A Jasmonic acid-amido syn 53.5 4.8 0.00016 38.6 1.6 31 167-197 95-126 (581)
71 3l8c_A D-alanine--poly(phospho 52.5 73 0.0025 29.6 9.8 98 14-129 143-252 (521)
72 4dg8_A PA1221; ANL superfamily 50.9 74 0.0025 30.6 9.7 87 168-274 40-129 (620)
73 3gqw_A Fatty acid AMP ligase; 46.4 83 0.0028 29.6 9.3 85 188-284 48-143 (576)
74 3tbh_A O-acetyl serine sulfhyd 46.0 1.5E+02 0.0052 25.8 10.2 60 65-124 68-127 (334)
75 3ite_A SIDN siderophore synthe 44.2 1.2E+02 0.004 28.6 9.9 83 168-254 33-121 (562)
76 4h1h_A LMO1638 protein; MCCF-l 37.3 1.4E+02 0.0048 26.0 8.5 60 64-123 8-86 (327)
77 4eez_A Alcohol dehydrogenase 1 36.6 1.4E+02 0.0048 25.9 8.5 57 63-122 159-215 (348)
78 2ayi_A Aminopeptidase T; metal 35.7 70 0.0024 29.1 6.3 52 32-98 4-57 (408)
79 1zsy_A Mitochondrial 2-enoyl t 35.7 1.3E+02 0.0043 26.4 8.1 59 63-122 163-223 (357)
80 3sr3_A Microcin immunity prote 35.2 1.6E+02 0.0054 25.8 8.5 60 64-123 9-87 (336)
81 3tla_A MCCF; serine protease, 33.8 1.7E+02 0.0058 26.1 8.5 60 64-123 39-117 (371)
82 3vc3_A Beta-cyanoalnine syntha 33.6 2.4E+02 0.0083 24.6 9.8 60 65-124 83-142 (344)
83 1zjc_A Aminopeptidase AMPS; me 32.1 81 0.0028 28.8 6.2 52 32-98 7-60 (418)
84 3tqh_A Quinone oxidoreductase; 30.6 1.4E+02 0.0047 25.7 7.3 56 63-122 148-203 (321)
85 4e5s_A MCCFLIKE protein (BA_56 29.9 1.9E+02 0.0065 25.2 8.1 60 64-123 8-86 (331)
86 3ip1_A Alcohol dehydrogenase, 28.0 2.1E+02 0.0073 25.5 8.4 55 64-122 210-265 (404)
87 4b7c_A Probable oxidoreductase 28.0 2.8E+02 0.0095 23.8 9.0 58 63-122 145-202 (336)
88 3ju7_A Putative PLP-dependent 27.9 1.3E+02 0.0043 26.7 6.8 57 63-122 73-136 (377)
89 2o1e_A YCDH; alpha-beta protei 27.3 2.5E+02 0.0085 24.2 8.3 73 69-141 190-266 (312)
90 3dzz_A Putative pyridoxal 5'-p 27.1 1.5E+02 0.005 25.9 7.1 55 65-122 106-167 (391)
91 3uog_A Alcohol dehydrogenase; 26.7 2.4E+02 0.0083 24.6 8.4 55 63-121 185-239 (363)
92 3uko_A Alcohol dehydrogenase c 26.2 2E+02 0.0068 25.4 7.8 57 63-123 189-246 (378)
93 3fpc_A NADP-dependent alcohol 25.8 1.8E+02 0.0062 25.3 7.4 56 63-122 162-218 (352)
94 1eg5_A Aminotransferase; PLP-d 25.6 1.5E+02 0.0051 25.7 6.8 56 66-122 87-146 (384)
95 4h27_A L-serine dehydratase/L- 25.3 1.8E+02 0.0062 25.7 7.2 56 70-125 94-149 (364)
96 3qwb_A Probable quinone oxidor 25.3 3.2E+02 0.011 23.4 9.2 57 63-122 144-200 (334)
97 4aec_A Cysteine synthase, mito 24.9 2.1E+02 0.0073 26.1 7.6 59 65-123 171-229 (430)
98 3acd_A Hypoxanthine-guanine ph 24.8 1.2E+02 0.0042 23.8 5.4 21 25-45 12-32 (181)
99 3s2e_A Zinc-containing alcohol 24.1 2.3E+02 0.0077 24.5 7.6 57 63-123 162-218 (340)
100 3goh_A Alcohol dehydrogenase, 24.1 1.3E+02 0.0044 25.8 5.9 77 25-120 114-190 (315)
101 2prs_A High-affinity zinc upta 23.4 2E+02 0.0069 24.3 6.9 70 70-139 175-248 (284)
102 2vsq_A Surfactin synthetase su 23.1 1.8E+02 0.0062 30.8 7.8 90 167-277 476-569 (1304)
103 3gms_A Putative NADPH:quinone 23.0 1.7E+02 0.0059 25.3 6.6 56 63-122 140-196 (340)
104 4dup_A Quinone oxidoreductase; 23.0 2.2E+02 0.0077 24.7 7.4 57 63-122 163-219 (353)
105 2duw_A Putative COA-binding pr 22.7 1.7E+02 0.0057 21.9 5.6 51 68-119 71-121 (145)
106 2ywu_A Hypoxanthine-guanine ph 22.5 1.4E+02 0.005 23.3 5.4 22 24-45 11-32 (181)
107 2rkb_A Serine dehydratase-like 22.0 2.8E+02 0.0097 23.7 7.7 58 68-126 54-111 (318)
108 3jv7_A ADH-A; dehydrogenase, n 21.4 2.5E+02 0.0086 24.2 7.4 57 64-123 168-224 (345)
109 1gu7_A Enoyl-[acyl-carrier-pro 21.1 1.9E+02 0.0065 25.2 6.5 58 64-122 163-223 (364)
110 2jwk_A Protein TOLR; periplasm 21.0 97 0.0033 19.7 3.5 37 3-39 32-68 (74)
111 1h2b_A Alcohol dehydrogenase; 20.8 1.9E+02 0.0065 25.3 6.5 57 64-123 183-239 (359)
112 1z7w_A Cysteine synthase; tran 20.5 3E+02 0.01 23.6 7.6 60 65-124 63-122 (322)
113 3ri6_A O-acetylhomoserine sulf 20.4 2.5E+02 0.0086 25.4 7.3 55 65-121 118-173 (430)
114 1t90_A MMSDH, probable methylm 20.2 5.1E+02 0.017 23.8 9.7 45 213-257 144-193 (486)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.3e-52 Score=405.29 Aligned_cols=336 Identities=21% Similarity=0.271 Sum_probs=281.6
Q ss_pred CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
+|+++.|.++++++||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|+
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 84 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-----------------IGIQQGDVIMLFLPSS 84 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence 57899999999999999999985 6899999999999999999999 4999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC-CCccccc
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD 157 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (372)
++++++++||+++|++++|+++.++.+++.+++++++++++|++....+.+...........+.++...... .......
T Consensus 85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T 3ni2_A 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ 164 (536)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence 999999999999999999999999999999999999999999999887777766554444444433211100 0000000
Q ss_pred -ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382 158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (372)
Q Consensus 158 -~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 232 (372)
...........++++++|+|||||||.||||+++|+++...+..... .+.+.++|++++.+|++|..++...++.
T Consensus 165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (536)
T 3ni2_A 165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244 (536)
T ss_dssp SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence 11111233456799999999999999999999999999988776553 3467899999999999999999777888
Q ss_pred HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (372)
Q Consensus 233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG 312 (372)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....+++++|.+++||
T Consensus 245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG 306 (536)
T ss_dssp HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence 9999999999999999999998 788999999999999999987632 2345789999999999
Q ss_pred CCCCHHHHHHHHHHh-CCccccccccccccccccCC-----CCCCCCCCcccccCCCceEEEeec
Q 017382 313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
+++++++.+.|.+.| +++++|.||+||++.+++.. .....+.+++|+|++|++++|+|+
T Consensus 307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 371 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDP 371 (536)
T ss_dssp SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECT
T ss_pred CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeC
Confidence 999999999999999 89999999999998654321 223456789999999999999995
No 2
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.5e-51 Score=399.63 Aligned_cols=334 Identities=22% Similarity=0.309 Sum_probs=275.3
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCc--eeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
+|+.+.|.++++++|+++|+++.++ ++||+||.++++++|+.|++ .|+++||+|+++++|+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 78 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-----------------LGIAKGDRVALLMPNS 78 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEcCCC
Confidence 4789999999999999999998776 99999999999999999999 4999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcc-ccc
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFD 157 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (372)
++++++++||+++|++++|+++.++.+++.+++++++++++|++....+.+.............+... ....... ...
T Consensus 79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (517)
T 3r44_A 79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI-GADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-EHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-CcccHHHHhhc
Confidence 99999999999999999999999999999999999999999999988877776654332111000000 0000000 000
Q ss_pred ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcC
Q 017382 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (372)
Q Consensus 158 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G 237 (372)
...........++++++|+|||||||.||||++||+++...+......+++..+|++++.+|++|..++...++. ++.|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcC
Confidence 011112234567899999999999999999999999999999999999999999999999999999999754444 5599
Q ss_pred ceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (372)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~ 317 (372)
+++++.+.+++..+++. ++++++|++.++|+++..+.+. +.....+++++|.+++||+++++
T Consensus 237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------~~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQV--------PEFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHS--------HHHHHCCCTTCCEEEECSSCCCH
T ss_pred eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhC--------cccccCCCCcccEEEECCCCCCH
Confidence 99999999999999999 7889999999999999999875 23345678999999999999999
Q ss_pred HHHHHHHHHhCCccccccccccccccccC--CCCCCCCCCcccccCCCceEEEeecC
Q 017382 318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~--~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++.+.|.+. +++++|.||+||+++.++. ......+.+++|+|+++++++|+|.|
T Consensus 299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 354 (517)
T 3r44_A 299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDD 354 (517)
T ss_dssp HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTT
T ss_pred HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCC
Confidence 999999887 9999999999999865542 22224567899999999999999864
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.7e-52 Score=400.79 Aligned_cols=331 Identities=32% Similarity=0.478 Sum_probs=273.2
Q ss_pred HHHHHHhCCcCCCceEEE---eCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 4 ~~~l~~~a~~~~~~~al~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
.+.|.++++++|+++|+. ++++++||+||.++++++|+.|+++ |+++||+|+++++|+++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 65 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE 65 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence 356788889999999988 4678999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..........+..+.................
T Consensus 66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (503)
T 4fuq_A 66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE 145 (503)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999987655554444433332222221110000000000011
Q ss_pred cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (372)
Q Consensus 161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 240 (372)
........++++++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++...++.+++.|+++
T Consensus 146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 225 (503)
T 4fuq_A 146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM 225 (503)
T ss_dssp CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 11223456789999999999999999999999999999999999999999999999999999998765677889999999
Q ss_pred EEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHH
Q 017382 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~ 320 (372)
++.+.+++..+++. ++ ++|+++++|+++..+++... ....+++++|.+++||+++++++.
T Consensus 226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~~ 285 (503)
T 4fuq_A 226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADTH 285 (503)
T ss_dssp EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHHH
T ss_pred EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHHH
Confidence 99999999999998 55 79999999999999987632 234467899999999999999999
Q ss_pred HHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
+.|.+.+|.+++|.||+||++..++.........+++|+|++|++++|+|.
T Consensus 286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 336 (503)
T 4fuq_A 286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDP 336 (503)
T ss_dssp HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECT
T ss_pred HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEEC
Confidence 999999999999999999999776655555667789999999999999994
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.5e-51 Score=401.02 Aligned_cols=336 Identities=21% Similarity=0.281 Sum_probs=279.4
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCC--------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (372)
+|+.+.|.++++++||++|+++.+ +++||+||.++++++|+.|++. |+++||+|+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~ 81 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG 81 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence 578899999999999999999876 8999999999999999999994 999999999
Q ss_pred EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCC
Q 017382 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (372)
Q Consensus 73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (372)
++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...+.+...........+.+... .....
T Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (549)
T 3g7s_A 82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL 160 (549)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence 99999999999999999999999999999999999999999999999999988887777655444322221111 00000
Q ss_pred cccccc-cccccccCCC-CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHH
Q 017382 153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (372)
Q Consensus 153 ~~~~~~-~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~ 230 (372)
...... .......... ++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++.. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~ 239 (549)
T 3g7s_A 161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V 239 (549)
T ss_dssp HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence 000000 0001112223 389999999999999999999999999999999988899999999999999999999865 7
Q ss_pred HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (372)
Q Consensus 231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~ 310 (372)
+.++..|+++++.+.+++..+++. ++++++|+++++|+++..+.+..... ....+++++|.+++
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~~~~ 303 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESS------NKTYDWSYLKVFAT 303 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHS------CCCCCCTTCCEEEE
T ss_pred HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhh------cccCCccceeEEEe
Confidence 788999999999999999999998 78899999999999999998763211 11257899999999
Q ss_pred cCCCCCHHHHHHHHHH----hC---CccccccccccccccccCC-CCCCCCCCcccccCCCceEEEeec
Q 017382 311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 311 gG~~~~~~~~~~~~~~----~~---~~l~~~YG~tE~~~~~~~~-~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
||+++++++.+.|.+. ++ .+++|.||+||++++++.. .....+.+++|+|+++++++|+|.
T Consensus 304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 372 (549)
T 3g7s_A 304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISL 372 (549)
T ss_dssp ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECS
T ss_pred CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeC
Confidence 9999999999999887 66 8999999999998766543 333467789999999999999993
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.4e-51 Score=401.22 Aligned_cols=336 Identities=21% Similarity=0.244 Sum_probs=273.6
Q ss_pred CHHHHHHHHhCCcCCCceEEE---e--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEc
Q 017382 1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~ 75 (372)
+|+.+.|.++++++|+++|++ + .++++||+||.++++++|+.|++ .|+++||+|++++
T Consensus 20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS 82 (550)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence 478999999999999999976 3 46899999999999999999999 5999999999999
Q ss_pred CCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCc
Q 017382 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET 153 (372)
Q Consensus 76 ~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 153 (372)
+|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+. .++.+..........
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 999999999999999999999999999999999999999999999999888877766554432 222222211111000
Q ss_pred ccccc-----------cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecC
Q 017382 154 TVFDQ-----------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP 219 (372)
Q Consensus 154 ~~~~~-----------~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p 219 (372)
...+. ..........++++++|+|||||||.||||+++|+++...+...... +++.++|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 00000 00011112235789999999999999999999999999887776654 46788999999999
Q ss_pred chhHHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (372)
Q Consensus 220 l~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 299 (372)
++|.+++. .++.+++.|+++++.+.+++..+++. ++++++|+++++|+++..+.+... ...
T Consensus 243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~ 303 (550)
T 3rix_A 243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK 303 (550)
T ss_dssp TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence 99999986 57788999999999999999999998 788999999999999999987632 234
Q ss_pred hhccCceEEEecCCCCCHHHHHHHHHHhCCc-cccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 300 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
.+++++|.+++||+++++++.+.|.+.|+.. ++|.||+||+++.++.......+.+++|+|+|+++++|+|.|
T Consensus 304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~ 377 (550)
T 3rix_A 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLD 377 (550)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTT
T ss_pred cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCC
Confidence 5789999999999999999999999999875 899999999987766555555678999999999999999953
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=7.4e-51 Score=396.71 Aligned_cols=334 Identities=18% Similarity=0.208 Sum_probs=274.6
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+.+.|.++++++||++|+++.++++||+||.++++++|+.|++ .|+++||+|+++++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 87 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE 87 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence 378899999999999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch-----HHHHHHHHhhcCC-ccccc-CCCCCCCCCc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFSLI-PPVPNVSSET 153 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 153 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++++. ...+..+....+. ..+.+ .....+.
T Consensus 88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 164 (539)
T 1mdb_A 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFL--- 164 (539)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSE---
T ss_pred HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchh---
Confidence 999999999999999999999999999999999999999998753 2233333322221 11111 1111110
Q ss_pred ccccc-cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHH
Q 017382 154 TVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL 231 (372)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~ 231 (372)
..... ..........++++++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++.. .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp EGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred hhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence 00000 0011123456789999999999999999999999999999988888889999999999999999999864 688
Q ss_pred HHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEec
Q 017382 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311 (372)
Q Consensus 232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~g 311 (372)
.+++.|+++++.+.+++..+++. ++++++|+++++|+++..+++.. .....++++||.+++|
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~~~~g 306 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAA--------SSRRDDLSSLQVLQVG 306 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHH--------HHCCCCCTTCCEEEEE
T ss_pred HHHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCc--------cccCCCccceeEEEEc
Confidence 89999999999999999999998 78899999999999999998752 2234578999999999
Q ss_pred CCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccCCC-ceEEEeecC
Q 017382 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG-VQVSMILLL 372 (372)
Q Consensus 312 G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~~g-~~i~Ivd~d 372 (372)
|+++++++.++|.+.+|++++|.||+||++...+.... .....+++|+|+++ .+++|+|.+
T Consensus 307 G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~ 369 (539)
T 1mdb_A 307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDH 369 (539)
T ss_dssp SSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTT
T ss_pred CCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCC
Confidence 99999999999999999999999999997654443222 12345789999976 589999864
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.3e-51 Score=398.79 Aligned_cols=332 Identities=18% Similarity=0.268 Sum_probs=273.9
Q ss_pred HHHHHHhCCcCCCceEEEe-----CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 4 FKAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 4 ~~~l~~~a~~~~~~~al~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
++.|.++++++||++|+++ .++++||+||.++++++|+.|++ +|+++||+|+++++|+
T Consensus 59 ~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-----------------~Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 59 YDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-----------------HGIGKGDYVMLTLKSR 121 (580)
T ss_dssp HHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCC
Confidence 4889999999999999996 24789999999999999999999 4999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH--HHHHHHHhhcCC---cccccCCCCCCCCCc
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSGA---KFSLIPPVPNVSSET 153 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (372)
++++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. +.+......... ..+.+... ......
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 200 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWI 200 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCE
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccc
Confidence 999999999999999999999999999999999999999999987654 555555443331 22222211 000001
Q ss_pred ccccc----cc----cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHH
Q 017382 154 TVFDQ----SQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225 (372)
Q Consensus 154 ~~~~~----~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 225 (372)
...+. .. ........++|+++|+|||||||.||+|.++|.+++..+......+++.+++++++..|++|..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (580)
T 3etc_A 201 DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC 280 (580)
T ss_dssp EHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHH
T ss_pred cHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHH
Confidence 11000 00 00012456789999999999999999999999999888777666778899999999999999998
Q ss_pred HHHHHHHHHHcCceEEEc--CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhcc
Q 017382 226 LFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303 (372)
Q Consensus 226 ~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~ 303 (372)
.+..++.++..|+++++. +.+++..+++. ++++++|+++++|+++..+.+. .....+++
T Consensus 281 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~~l~ 341 (580)
T 3etc_A 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHYNFS 341 (580)
T ss_dssp HHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---CCT
T ss_pred HHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccCCCc
Confidence 877788899999999988 57899999998 7889999999999999999774 12345789
Q ss_pred CceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 304 ~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+||.+++||+++++++.++|.+.+|+++++.||+||+++.++.......+.+++|+|+||++++|+|+|
T Consensus 342 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~ 410 (580)
T 3etc_A 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRD 410 (580)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTT
T ss_pred cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCC
Confidence 999999999999999999999999999999999999987666555456778999999999999999975
No 8
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.4e-50 Score=393.24 Aligned_cols=334 Identities=17% Similarity=0.249 Sum_probs=271.1
Q ss_pred CHHHHHHHHhCCcCCCceEEE----eCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382 1 MEVFKAAYKKGSMARDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~----~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~ 76 (372)
+|+.+.|.++++++||++|++ ++++++||+||.++++++|+.|++ +|+++||+|+++++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ 80 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF 80 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 468899999999999999999 356899999999999999999999 49999999999999
Q ss_pred CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCCCCcc
Q 017382 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETT 154 (372)
Q Consensus 77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 154 (372)
|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.......+. .++.+..... .....
T Consensus 81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (541)
T 1v25_A 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA 159 (541)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence 99999999999999999999999999999999999999999999999887777665543321 1222221110 00000
Q ss_pred cccccc-cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHH--HhhcccCCCCeEEEecCchhHHHHHHHHH
Q 017382 155 VFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL 231 (372)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~~~~~~~~ 231 (372)
..+... ........++++++|+|||||||.||||++||+++....... ...++++++|++++.+|++|..++. .++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~ 238 (541)
T 1v25_A 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY 238 (541)
T ss_dssp HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence 000000 011133456899999999999999999999999998776653 3456788999999999999999985 477
Q ss_pred HHHHcCceEEEcCC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382 232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (372)
Q Consensus 232 ~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~ 310 (372)
.+++.|+++++.+. +++..+++. ++++++|+++++|+++..+.+.. .....+++++|.+++
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~i~~ 300 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYL--------ESTGHRLKTLRRLVV 300 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHH--------HHHTCCCSSCCEEEE
T ss_pred HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhh--------hccCCcchhccEEEE
Confidence 88999999999874 699999988 78899999999999999998753 223457899999999
Q ss_pred cCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCC-----------CCCCCcccccCCCceEEEeecC
Q 017382 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 311 gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~svG~p~~g~~i~Ivd~d 372 (372)
||+++++++.+.| +.+|++++|.||+||++.+++..... ....+++|+|+||++++|+|+|
T Consensus 301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 372 (541)
T 1v25_A 301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE 372 (541)
T ss_dssp CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT
T ss_pred CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCC
Confidence 9999999999999 66899999999999998665432211 0235789999999999999964
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-50 Score=395.37 Aligned_cols=337 Identities=15% Similarity=0.190 Sum_probs=274.3
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+.+.|.++++++||++|++++++++||+||.++++++|+.|++. |+++||+|+++++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~ 92 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE 92 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence 4688999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-Cc-ccccCCCCCCCCCc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AK-FSLIPPVPNVSSET 153 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 153 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|+++... ........... .. ..............
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL 172 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence 9999999999999999999999999999999999999999987543 23333322211 11 11111110000000
Q ss_pred ccccc--cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HH
Q 017382 154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL 230 (372)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~ 230 (372)
..... ..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 00000 0011113446789999999999999999999999999999999999999999999999999999998864 57
Q ss_pred HHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEe
Q 017382 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (372)
Q Consensus 231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~ 310 (372)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....+++++|.+++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~i~~ 314 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAA--------QYKDQIQSLKLLQV 314 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHT--------TTHHHHTTCCEEEE
T ss_pred HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchh--------hccccCCcceEEEE
Confidence 889999999999999999999998 788999999999999999987633 23346799999999
Q ss_pred cCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC-CCCCCCcccccC-CCceEEEeecC
Q 017382 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPL-PGVQVSMILLL 372 (372)
Q Consensus 311 gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~svG~p~-~g~~i~Ivd~d 372 (372)
||+++++++.+.|.+.+|+++++.||+||++...+.... .....+++|+|+ ++++++|+|.+
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~ 378 (544)
T 3o83_A 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQ 378 (544)
T ss_dssp ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTT
T ss_pred cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCC
Confidence 999999999999999999999999999998865543322 223457899997 89999999964
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.3e-50 Score=392.83 Aligned_cols=333 Identities=21% Similarity=0.257 Sum_probs=273.2
Q ss_pred HHHH-HHHHhCCcCCCceEEEe--CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 2 ~~~~-~l~~~a~~~~~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
|+.+ .+.++++++ |++|+++ .++++||+||.++++++|+.|++ +|+++||+|+++++|+
T Consensus 26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 87 (548)
T 2d1s_A 26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC 87 (548)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence 6778 888889889 9999997 57899999999999999999999 5999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC--CcccccCCCCC---CCCCc
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET 153 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 153 (372)
++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.......+ ..++.+..... .....
T Consensus 88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
T 2d1s_A 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD 167 (548)
T ss_dssp TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999987776665543332 22222221110 00000
Q ss_pred cccccc-cc-ccccCC------CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh---cccCCCCeEEEecCchh
Q 017382 154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH 222 (372)
Q Consensus 154 ~~~~~~-~~-~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~ 222 (372)
...... .. ...... .++++++|+|||||||.||+|++||+++...+...... ++++++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 000000 00 001111 23899999999999999999999999999988877666 67889999999999999
Q ss_pred HHHHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhc
Q 017382 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (372)
Q Consensus 223 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l 302 (372)
..++...++.++ .|+++++.+.+++..+++. ++++++|+++++|+++..+.+... ....++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l 308 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL 308 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence 999976567777 9999999999999999998 788999999999999999987522 234578
Q ss_pred cCceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeec
Q 017382 303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 303 ~~lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
+++|.+++||+++++++.+.|.+.| +.++++.||+||++.+++.......+.+++|+|+|+++++|+|.
T Consensus 309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 378 (548)
T 2d1s_A 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDL 378 (548)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECT
T ss_pred cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeC
Confidence 9999999999999999999999999 68899999999998766544334467789999999999999994
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6e-50 Score=387.43 Aligned_cols=330 Identities=20% Similarity=0.248 Sum_probs=267.1
Q ss_pred CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
||+.+.|.++++++||++|+++. ++++||+||.++++++|+.|++. |+++||+|+++++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~ 64 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS 64 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence 57999999999999999999987 88999999999999999999994 999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEe--ccchHHHH-HHHHhhcCCcccccCCCCCCCCCccc
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV 155 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (372)
++++++++||+++|++++|+++.++.+++.+++++++++++|+ +....+.+ ... . ...++.+.... ......
T Consensus 65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~ 139 (504)
T 1t5h_X 65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG-S--GARIIFLGDLV--RDGEPY 139 (504)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC-C--CCEEEEGGGTE--ETTEEC
T ss_pred HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc-c--cceeEEecchh--hcCccc
Confidence 9999999999999999999999999999999999999999999 76654443 221 1 11111111000 000000
Q ss_pred ccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhccc--CCCCeEEEecCchhHHHHHHHHHHH
Q 017382 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP 233 (372)
Q Consensus 156 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~~~~~~ 233 (372)
............++++++|+|||||||.||||+++|+++...+......+++ .++|++++.+|++|..++...++.+
T Consensus 140 -~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 140 -SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp -CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred -ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 0000011133467899999999999999999999999999988888877887 7899999999999999986568889
Q ss_pred HHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCC
Q 017382 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (372)
Q Consensus 234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~ 313 (372)
+..|+++++.+.+++..+++. ++++++|+++++|+++..+.+.... .....+++++|.+++||+
T Consensus 219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCC------TTCCCCCTTCCEEEECCT
T ss_pred HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhcc------ccccccCccccEEEEcCC
Confidence 999999999999999999998 7889999999999999999875311 012346799999999999
Q ss_pred CCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++++++.+.|.+.++.+++|.||+||++...... ..+.+++|+|+++++++|+|.+
T Consensus 283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~ 338 (504)
T 1t5h_X 283 TMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIG 338 (504)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTT
T ss_pred cCCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEecc
Confidence 9999999999999999999999999994332221 3466899999999999999864
No 12
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.4e-50 Score=387.00 Aligned_cols=330 Identities=18% Similarity=0.235 Sum_probs=263.3
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCC---------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEE
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (372)
+|+.+.|.++++++||++|+++.+ +++||+||.++++++|+.|++. |+ +||+|
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V 85 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV 85 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence 578999999999999999999754 8999999999999999999994 85 99999
Q ss_pred EEEcCCCHhHHHHHHHHHhhCceeeeCCC---CCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC----cccccC
Q 017382 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP 144 (372)
Q Consensus 72 ~l~~~n~~~~~~~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (372)
+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++++..+.+......... ....+.
T Consensus 86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (480)
T 3t5a_A 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD 165 (480)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence 99999999999999999999999999999 77899999999999999999999877666554322111 111111
Q ss_pred CCCCCCCCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCC------CCeEEEec
Q 017382 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL 218 (372)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~l~~~ 218 (372)
... .............++++++|+|||||||.||||++||+++..++......+.+.. +|++++++
T Consensus 166 ~~~--------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 237 (480)
T 3t5a_A 166 LLD--------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237 (480)
T ss_dssp GSC--------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred ccc--------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence 000 0001111233456789999999999999999999999999999988888887777 99999999
Q ss_pred CchhHHHHHHHHHHHHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHH
Q 017382 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294 (372)
Q Consensus 219 pl~~~~~~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 294 (372)
|++|.+++...++.+++.|+++++.+.+ ++..+++. ++++++| +..+|+++..++......
T Consensus 238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~---- 302 (480)
T 3t5a_A 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD---- 302 (480)
T ss_dssp CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence 9999999877789999999999999764 88888888 8999999 888999988887642110
Q ss_pred HHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC------CccccccccccccccccCCCCC------------------
Q 017382 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------ 350 (372)
Q Consensus 295 ~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~------------------ 350 (372)
......++++||.+++||+++++++.++|.+.|+ ..++|.||+||++++++.....
T Consensus 303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 382 (480)
T 3t5a_A 303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382 (480)
T ss_dssp GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence 1234567899999999999999999999999884 3799999999998766532211
Q ss_pred -------CCCCCcccccCCCceEEEeecC
Q 017382 351 -------ARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 351 -------~~~~~svG~p~~g~~i~Ivd~d 372 (372)
..+.+++|+|++ ++++|+|+|
T Consensus 383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~ 410 (480)
T 3t5a_A 383 KPCAGGGATSLISYMLPRS-PIVRIVDSD 410 (480)
T ss_dssp CCCCSSSCEEEECEECCSS-SEEEEEETT
T ss_pred eecCCCCcceeeecCcccC-CEEEEEcCC
Confidence 124468999999 999999964
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.1e-49 Score=396.27 Aligned_cols=337 Identities=20% Similarity=0.227 Sum_probs=270.0
Q ss_pred HHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (372)
Q Consensus 3 ~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~ 76 (372)
+++.|.++++++||++|+++ .++++||+||.+++.++|+.|++ +|+++||+|+++++
T Consensus 78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~ 140 (652)
T 1pg4_A 78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP 140 (652)
T ss_dssp HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence 45677788888999999997 34789999999999999999999 59999999999999
Q ss_pred CCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC----Cccccc
Q 017382 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI 143 (372)
Q Consensus 77 n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~ 143 (372)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+...... ..++.+
T Consensus 141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 233444333221 112222
Q ss_pred CCCCC-CC--CC--ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHH-HHHhhcccCCCCe
Q 017382 144 PPVPN-VS--SE--TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (372)
Q Consensus 144 ~~~~~-~~--~~--~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~ 213 (372)
..... .. .. ....+ ...........++++++|+|||||||.||||+++|++++..+. .....+++.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence 21110 00 00 00000 0000112234578999999999999999999999999887664 4456678999999
Q ss_pred EEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhh
Q 017382 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (372)
Q Consensus 214 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 289 (372)
+++..|++|+.++...++.+|+.|+++++.+. +++..+++. ++++++|+++++|+++..+.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 99999999999986568899999999999875 588999998 7889999999999999999875321
Q ss_pred ccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCCC--CCCCCCcccccCCCc
Q 017382 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGV 364 (372)
Q Consensus 290 ~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~ 364 (372)
.....++++||.+++||++++++++++|.+.+| +++++.||+||+++.++.... ...+.+++|+|++|+
T Consensus 371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~ 444 (652)
T 1pg4_A 371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV 444 (652)
T ss_dssp ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence 123457899999999999999999999999988 899999999999876554322 245679999999999
Q ss_pred eEEEeecC
Q 017382 365 QVSMILLL 372 (372)
Q Consensus 365 ~i~Ivd~d 372 (372)
+++|+|.+
T Consensus 445 ~v~i~d~~ 452 (652)
T 1pg4_A 445 QPALVDNE 452 (652)
T ss_dssp CEEEECTT
T ss_pred eEEEECCC
Confidence 99999964
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.1e-49 Score=382.94 Aligned_cols=328 Identities=19% Similarity=0.246 Sum_probs=268.1
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+.+.|.++++++||++|++++++++||+||.++++++|+.|++. |+++||+|+++++|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~ 68 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE 68 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence 5889999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCc--ccccCCCCCCCCCccccc-
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVSSETTVFD- 157 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 157 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......... .+.+.... ........
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 146 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS--GPFAPFKDL 146 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC--SSCEEGGGT
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC--cChhhHhhc
Confidence 99999999999999999999999999999999999999999998877654443333211 11121110 00011111
Q ss_pred -ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHc
Q 017382 158 -QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236 (372)
Q Consensus 158 -~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~ 236 (372)
...........++++++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|..++.. ++.++..
T Consensus 147 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~ 225 (509)
T 3ivr_A 147 ASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQA 225 (509)
T ss_dssp CCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHH
T ss_pred cCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHh
Confidence 11111233456789999999999999999999999999999999999999999999999999999999975 4444555
Q ss_pred CceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCC
Q 017382 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP 316 (372)
Q Consensus 237 G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~ 316 (372)
|++.++...+++..+++. ++++++|++.++|+++..+++.. ...+++++|.++.+|++
T Consensus 226 ~g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~-- 283 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP-- 283 (509)
T ss_dssp TCEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH--
T ss_pred CCcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh--
Confidence 555555558899999998 78899999999999999998752 23477899999999987
Q ss_pred HHHHHHHHHHh-CCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 317 LPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 317 ~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++.+.+.+.+ +++++|.||+||++++++.... .....++|+|++|++++|+|.+
T Consensus 284 -~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~ 338 (509)
T 3ivr_A 284 -ETIERFEATCPNATFWATFGQSETSGLSTFAPY-RDRPKSAGRPLFWRTVAVVDAE 338 (509)
T ss_dssp -HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG-GGSTTSCCEECTTCEEEEECTT
T ss_pred -HHHHHHHHhcCCCeEEcccCccccccccccCcc-ccCCCcccccCCCcEEEEECCC
Confidence 8888999888 8999999999999876653322 2334559999999999999974
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.8e-49 Score=386.40 Aligned_cols=334 Identities=23% Similarity=0.321 Sum_probs=263.6
Q ss_pred HHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHH
Q 017382 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (372)
Q Consensus 3 ~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~ 82 (372)
+.+.+.++++ +|+++|++++++++||+||.++++++|+.|++ .|+++||+|+++++|+++++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRT-----------------LGVHPEERILLVMLDTVALP 87 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSTHHH
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHHH
Confidence 6677888888 99999999989999999999999999999999 49999999999999999999
Q ss_pred HHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC---CcccccCCCCC----CCCCccc
Q 017382 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPN----VSSETTV 155 (372)
Q Consensus 83 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~ 155 (372)
++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+........ ..++....... .......
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence 9999999999999999999999999999999999999999887766655433211 11111111100 0000000
Q ss_pred cc-ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhH-HHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHH
Q 017382 156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (372)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~ 233 (372)
.. ...........++++++|+|||||||.||+|++||+++ ..........+++.++|++++.+|++|..++...++.+
T Consensus 168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 00 00111122346789999999999999999999999999 55554444566788999999999999999997667888
Q ss_pred HHcCceEEEc-CCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382 234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (372)
Q Consensus 234 l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG 312 (372)
+..|+++++. +.+++..+++. ++++++|+++++|+++..+++.... ......++|.+++||
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG 309 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNL--------PARADVAIRICTSAG 309 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTC--------CCGGGCCCCEEEECS
T ss_pred HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccc--------ccccCCceEEEEEcC
Confidence 9999999988 67899999998 7889999999999999998865221 111124899999999
Q ss_pred CCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+++++++.+.|.+.+|+++++.||+||++.+.+.......+.+++|+|++|++++|+|++
T Consensus 310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 369 (529)
T 2v7b_A 310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEA 369 (529)
T ss_dssp SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTT
T ss_pred CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCC
Confidence 999999999999999999999999999965544333334567899999999999999964
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.6e-50 Score=392.26 Aligned_cols=327 Identities=17% Similarity=0.227 Sum_probs=267.5
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
||+.+.|.++++++||++|+++.++++||+||.++++++|+.|.+ .|+++||+|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e 63 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE 63 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence 899999999999999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++..... ............ ............
T Consensus 64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~ 134 (512)
T 3fce_A 64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSEDN---LKDIFFTHKGNT 134 (512)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETHH---HHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechhh---hhhhcccccccC
Confidence 99999999999999999999999999999999999999999853210 000000000000 000000000001
Q ss_pred cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (372)
Q Consensus 161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 240 (372)
........++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++. .++.+++.|+++
T Consensus 135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 1122345678999999999999999999999999999999988899999999999999999999986 588999999999
Q ss_pred EEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (372)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~ 317 (372)
++.+. +++..+++. ++++++|++.++|+++..++... .....+++++|.+++||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEA--------SFSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTST--------TCSTTTSTTCCEEEECSSCCCH
T ss_pred EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc--------cccchhCccccEEEEecCcCCH
Confidence 99987 688899888 78899999999999999887652 2234578999999999999999
Q ss_pred HHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382 318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 318 ~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++.+.|.+.| ++++++.||+||+++.++.... ......++|+|+++++++|+|.+
T Consensus 276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 336 (512)
T 3fce_A 276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED 336 (512)
T ss_dssp HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSS
T ss_pred HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCC
Confidence 9999999999 8899999999999876552211 12466789999999999999964
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.9e-49 Score=387.61 Aligned_cols=332 Identities=18% Similarity=0.186 Sum_probs=269.5
Q ss_pred HHHHHHHhCCc-----CCCceEEEeC-----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEE
Q 017382 3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (372)
Q Consensus 3 ~~~~l~~~a~~-----~~~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (372)
+.+.+.++++. +||++|+++. ++++||+||.++++++|+.|++. +|+++||+|+
T Consensus 40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~ 103 (570)
T 3c5e_A 40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA 103 (570)
T ss_dssp HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence 35677777777 9999999972 37899999999999999999983 3999999999
Q ss_pred EEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCC--cccccCCCCCCC
Q 017382 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVS 150 (372)
Q Consensus 73 l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (372)
++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+. .++.+.... ..
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 182 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CD 182 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-CT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccC-cc
Confidence 999999999999999999999999999999999999999999999999998887777665443332 111221100 00
Q ss_pred CCccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHH--HHHHHHhhcccCCCCeEEEecCchhHH
Q 017382 151 SETTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH 224 (372)
Q Consensus 151 ~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~~~~ 224 (372)
......+ ...........++++++|+|||||||.||||+++|+ ++. ..... ..+++.++|++++..|++|..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~ 260 (570)
T 3c5e_A 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL 260 (570)
T ss_dssp TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence 0000000 000111233467899999999999999999999999 544 33333 667888999999999999999
Q ss_pred HHHHHHHHHHHcCceEEEcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhc
Q 017382 225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (372)
Q Consensus 225 ~~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l 302 (372)
++...++.++..|+++++.+ .+++..+++. ++++++|+++++|+++..+.+.. ....++
T Consensus 261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~ 321 (570)
T 3c5e_A 261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF 321 (570)
T ss_dssp HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence 98767888999999999987 6899999998 78899999999999999998641 223467
Q ss_pred cCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 303 ~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+++|.+++||+++++++.+.|.+.+|++++|.||+||++.+++.......+.+++|+|++|++++|+|+|
T Consensus 322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 391 (570)
T 3c5e_A 322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDK 391 (570)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTT
T ss_pred ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCC
Confidence 9999999999999999999999989999999999999987665444334567899999999999999964
No 18
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.5e-49 Score=388.00 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=262.4
Q ss_pred HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (372)
Q Consensus 2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~ 81 (372)
|+++.|.++++++||++|+++.++++||+||.++++++|+.|++ .|+++||+|+++++|++++
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 90 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES 90 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 68899999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (372)
Q Consensus 82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (372)
+++++||+++|++++|++|.++.+++.+++++++++++++++...... . ......+. ........
T Consensus 91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~----~--~~~~~~~~---------~~~~~~~~ 155 (620)
T 4dg8_A 91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA----N--GLPCVPVR---------HLPAAPAS 155 (620)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC----T--TSCEEEGG---------GCCCCCCC
T ss_pred HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc----c--CCceeeec---------cCCcCCcc
Confidence 999999999999999999999999999999999999999765321100 0 00000000 00000011
Q ss_pred ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (372)
Q Consensus 162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 241 (372)
.......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++..|++|..+++ .++.+++.|++++
T Consensus 156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 1122345789999999999999999999999999876654 4566888999999999999999986 5889999999999
Q ss_pred EcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (372)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~ 319 (372)
+.+ .+++..+++. ++++++|+++++|+++..+.+. ...++++||.+++||++++++.
T Consensus 234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~ 292 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH 292 (620)
T ss_dssp ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence 965 5789999888 8889999999999999998763 2236789999999999999999
Q ss_pred HHHHHHHh-CCccccccccccccccccC----CCCCCCCCCcccccCCCceEEEeecC
Q 017382 320 MQQWETIT-GHRLLERYGMTEFVMAISN----PLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~----~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
.+++.+.+ +++++|.||+||+++.++. .........++|+|++|++++|+|.+
T Consensus 293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~ 350 (620)
T 4dg8_A 293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEH 350 (620)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTT
T ss_pred HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECcc
Confidence 99988776 8899999999999876542 12223456789999999999999974
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.9e-49 Score=394.97 Aligned_cols=337 Identities=18% Similarity=0.244 Sum_probs=269.2
Q ss_pred HHHHHHHHhCCcCCCceEEEe------CCceeeHHHHHHHHHHHHHHHh-hCCCCcccccccccccccccCCCCCEEEEE
Q 017382 2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIV 74 (372)
Q Consensus 2 ~~~~~l~~~a~~~~~~~al~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~ 74 (372)
++++.|.++++++||++|+++ .++++||+||.+++.++|+.|+ + +|+++||+|+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~ 145 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVY 145 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEEC
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEE
Confidence 356778899999999999997 3478999999999999999998 7 599999999999
Q ss_pred cCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch---------HHHHHHHHhhcC--Cccccc
Q 017382 75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG--AKFSLI 143 (372)
Q Consensus 75 ~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~--~~~~~~ 143 (372)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+.....+ ..++.+
T Consensus 146 ~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 225 (663)
T 1ry2_A 146 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY 225 (663)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999998753 233444333222 112222
Q ss_pred CCCCC--CC--CC--ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHH-HHHhhcccCCCC
Q 017382 144 PPVPN--VS--SE--TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSAD 212 (372)
Q Consensus 144 ~~~~~--~~--~~--~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d 212 (372)
..... .. .. ....+ ...........++++++|+|||||||.||||+++|.+++..+. .....+++.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d 305 (663)
T 1ry2_A 226 RKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED 305 (663)
T ss_dssp CSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSC
T ss_pred ecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCc
Confidence 21110 00 00 00000 0000112234578999999999999999999999999887664 345567899999
Q ss_pred eEEEecCchhHHHHHHHHHHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhh
Q 017382 213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288 (372)
Q Consensus 213 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 288 (372)
++++..|++|+.+....++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+...
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~ 375 (663)
T 1ry2_A 306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGD 375 (663)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCT
T ss_pred EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCc
Confidence 999999999999986668899999999999875 578999998 788999999999999999876522
Q ss_pred hccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC---CccccccccccccccccCCC---CCCCCCCcccccCC
Q 017382 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLP 362 (372)
Q Consensus 289 ~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~---~~~~~~~svG~p~~ 362 (372)
. .....++++||.+++||+++++++++++.+.+| +++++.||+||+++.++... ....+.+++|+|++
T Consensus 376 ~------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~ 449 (663)
T 1ry2_A 376 S------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF 449 (663)
T ss_dssp T------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred c------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence 1 123457899999999999999999999999888 89999999999986554332 22456799999999
Q ss_pred CceEEEeec
Q 017382 363 GVQVSMILL 371 (372)
Q Consensus 363 g~~i~Ivd~ 371 (372)
|++++|+|+
T Consensus 450 g~~v~i~d~ 458 (663)
T 1ry2_A 450 GIDAVVLDP 458 (663)
T ss_dssp TCCEEEECS
T ss_pred CCeEEEEcC
Confidence 999999997
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.7e-49 Score=384.83 Aligned_cols=324 Identities=17% Similarity=0.274 Sum_probs=270.6
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
||+.+.|.++++++||++|+++.++++||+||.++++++|+.|.++ .|.++|++|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~ 64 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH 64 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence 8999999999999999999999999999999999999999999884 488899999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccc--cc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ 158 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 158 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|+++.... .........+ ...... ..
T Consensus 65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~ 131 (511)
T 3e7w_A 65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV-------SAEELLENEG 131 (511)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE-------EHHHHHTSCS
T ss_pred HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee-------cHhhhhcccc
Confidence 99999999999999999999999999999999999999999753210 0000000000 000000 00
Q ss_pred cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (372)
Q Consensus 159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~ 238 (372)
..........++++++|+|||||||.||+|++||+++...+......+++..+|++++.+|++|..++. .++.++..|+
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 210 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG 210 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence 001112334678999999999999999999999999999999988889999999999999999999985 6888999999
Q ss_pred eEEEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382 239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (372)
Q Consensus 239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~ 315 (372)
++++.+. +++..+++. ++++++|++.++|+++..+++... ....+++++|.+++||+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence 9999987 688888888 788999999999999999887522 2345688999999999999
Q ss_pred CHHHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 316 ~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++++.+.+.+.| ++++++.||+||+++.++.... ......++|+|+|+++++|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 335 (511)
T 3e7w_A 273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEE 335 (511)
T ss_dssp CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTT
T ss_pred CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCC
Confidence 999999999999 8999999999999876553211 12456789999999999999974
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.5e-49 Score=408.97 Aligned_cols=337 Identities=20% Similarity=0.270 Sum_probs=280.6
Q ss_pred CHHHHHHHHhCCcCCCceEEEeC--CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
+|+++.|.++++++||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|+
T Consensus 61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-----------------LGVNQNDVVMLLLPNC 123 (979)
T ss_dssp SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEeCCC
Confidence 57899999999999999999986 7899999999999999999999 4999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCC------
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE------ 152 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 152 (372)
++++++++||+++|++++|++|.++++++.+++++++++++|++++..+.+..........++.+.........
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 99999999999999999999999999999999999999999999887666655544433333333322111000
Q ss_pred ccccc----ccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHH
Q 017382 153 TTVFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH 224 (372)
Q Consensus 153 ~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~ 224 (372)
..... ...........++++++|+|||||||.||||+++|+++...+..... .+.+.++|++++.+|++|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 00000 00111233456899999999999999999999999999988776654 34678899999999999999
Q ss_pred HHHHHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccC
Q 017382 225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (372)
Q Consensus 225 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~ 304 (372)
++...++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....++++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~ 345 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS 345 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence 997778889999999999999999999998 788999999999999999987632 23457899
Q ss_pred ceEEEecCCCCCHHHHHHHHHHh-CCccccccccccccccccCC-----CCCCCCCCcccccCCCceEEEeecC
Q 017382 305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 305 lr~v~~gG~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+|.+++||+++++++.+.|.+.| +++++|.||+||++.+++.. .....+.+++|+|++|++++|+|+|
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 419 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPD 419 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCC
Confidence 99999999999999999999998 89999999999998654422 2223567899999999999999953
No 22
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.6e-49 Score=384.22 Aligned_cols=329 Identities=22% Similarity=0.270 Sum_probs=264.2
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
||+.+.|.++++++||++|+++.++++||+||.+++.++|+.|++ . +||+|+++++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e 60 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ 60 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999987 2 79999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccC-CCC-------CC--C
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP-PVP-------NV--S 150 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~--~ 150 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+.................... ... .. .
T Consensus 61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 9999999999999999999999999999999999999999987543211000000000000000 000 00 0
Q ss_pred C-Ccccc--cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHH
Q 017382 151 S-ETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (372)
Q Consensus 151 ~-~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 227 (372)
. ..... ............++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 0 00000 00011122345679999999999999999999999999999999998899999999999999999999996
Q ss_pred HHHHHHHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceE
Q 017382 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (372)
Q Consensus 228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~ 307 (372)
. ++.+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+.... ...++|.
T Consensus 221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~ 278 (501)
T 3ipl_A 221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK 278 (501)
T ss_dssp H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence 4 8889999999999999999999999 7889999999999999999875321 1238999
Q ss_pred EEecCCCCCHHHHHHHHHHhCCccccccccccccccccCCCC--CCCCCCcccccCCCceEEEeecC
Q 017382 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 308 v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+++||+++++++.+.+.+ ++++++|.||+||+++.++.... ...+.+++|+|+++++++|+|++
T Consensus 279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 344 (501)
T 3ipl_A 279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN 344 (501)
T ss_dssp EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC
T ss_pred EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC
Confidence 999999999999999987 59999999999998865432221 23567899999999999999974
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.2e-49 Score=384.24 Aligned_cols=319 Identities=19% Similarity=0.317 Sum_probs=259.8
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+.+.|.++++++||++|+++.++++||+||.++++++|+.|++. |+++||+|+++++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e 101 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID 101 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence 3688999999999999999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+.. ......+.. .... ....
T Consensus 102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------~~~~ 172 (563)
T 1amu_A 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIK------IREG 172 (563)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTT------TSCC
T ss_pred HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhc------cccC
Confidence 999999999999999999999999999999999999999999876554332110 011111111 0000 0001
Q ss_pred cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceE
Q 017382 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (372)
Q Consensus 161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 240 (372)
........++++++|+|||||||.||||++||+++...+......+++.++|++++..|++|..+++ .++.+++.|+++
T Consensus 173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 251 (563)
T 1amu_A 173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL 251 (563)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence 1112234578999999999999999999999999999888888888999999999999999999986 578899999999
Q ss_pred EEcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCH
Q 017382 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (372)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~ 317 (372)
++.+. +++..+++. ++++++|++.++|+++..+.+. .++++|.+++||+++++
T Consensus 252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP 307 (563)
T ss_dssp EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence 99886 578888888 7889999999999998776432 46889999999999999
Q ss_pred HHHHHHHHHhCCccccccccccccccccCC---CCCCCCCCcccccCCCceEEEeecC
Q 017382 318 PVMQQWETITGHRLLERYGMTEFVMAISNP---LRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 318 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++.+.|.+ ..++++.||+||++++++.. ........++|+|++|++++|+|+|
T Consensus 308 ~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 363 (563)
T 1amu_A 308 SLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDEN 363 (563)
T ss_dssp HHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTT
T ss_pred HHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCC
Confidence 99999876 47899999999998655421 1122356789999999999999964
No 24
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.5e-48 Score=382.93 Aligned_cols=318 Identities=20% Similarity=0.268 Sum_probs=262.0
Q ss_pred HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (372)
Q Consensus 2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~ 81 (372)
++++.|.++++++||++|+++.++++||+||.++++++|+.|++ .|+++||+|+++++|++++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~ 138 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVG-----------------LGVAPGTLVGVHLERGFDM 138 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 68899999999999999999999999999999999999999999 4999999999999999999
Q ss_pred HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (372)
Q Consensus 82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (372)
+++++||+++|++++|+++.++.+++.+++++++++++|+++.....+. ......+... ........
T Consensus 139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~ 205 (570)
T 4gr5_A 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDE-------AASDAPAG 205 (570)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeecc-------cccccccc
Confidence 9999999999999999999999999999999999999999975422110 0001111000 00001111
Q ss_pred ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (372)
Q Consensus 162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 241 (372)
.......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..+.+ .++.+++.|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 1223456789999999999999999999999999765544 3455788999999999999977765 5888999999999
Q ss_pred EcC--CCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHH
Q 017382 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (372)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~ 319 (372)
+.+ .+++..+++. ++++++|++.++|+++..+.+.. ..++++||.+++||+++++++
T Consensus 284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~ 342 (570)
T 4gr5_A 284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH 342 (570)
T ss_dssp ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence 987 4688888888 78899999999999999998652 235789999999999999999
Q ss_pred HHHHHHHh-CCccccccccccccccccCC----CCCCCCCCcccccCCCceEEEeecC
Q 017382 320 MQQWETIT-GHRLLERYGMTEFVMAISNP----LRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~----~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
.+.+.+.+ ++++++.||+||++++++.. ........++|+|++|++++|+|+|
T Consensus 343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~ 400 (570)
T 4gr5_A 343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDD 400 (570)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTT
T ss_pred HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCC
Confidence 99999887 78999999999998665421 1123455779999999999999974
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.8e-49 Score=380.29 Aligned_cols=318 Identities=35% Similarity=0.536 Sum_probs=263.1
Q ss_pred CHHHHHHHHhCCcCCC-ceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH
Q 017382 1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~-~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~ 79 (372)
+|+++.|.++++++|+ ++|++++++++||+||.++++++|..|.. |++|+++++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~ 79 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM 79 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence 4677888899999998 99999999999999999999999987743 789999999999
Q ss_pred hHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcC-CcccccCCCCCCCCCcccccc
Q 017382 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ 158 (372)
Q Consensus 80 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (372)
+++++++||+++|++++|+++.++.+++.+++++++++++|++.+... ..... .....+.. ..
T Consensus 80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~-----------~~ 143 (505)
T 3nyq_A 80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDVDV-----------RA 143 (505)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEECCT-----------TC
T ss_pred HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccccc-----------cc
Confidence 999999999999999999999999999999999999999999864210 00000 00111100 00
Q ss_pred cccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (372)
Q Consensus 159 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~ 238 (372)
..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++.++..|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 00111233467899999999999999999999999999999999999999999999999999999998767889999999
Q ss_pred eEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (372)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~ 318 (372)
++++.+.+++..+++. + ++++|+++++|+++..+.+.+...+ ....+++++|.+++||++++++
T Consensus 224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~l~~lr~i~~gg~~l~~~ 287 (505)
T 3nyq_A 224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADP-----ELAKALAGARLLVSGSAALPVH 287 (505)
T ss_dssp EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCH-----HHHHHHHHCSEEEECSSCCCHH
T ss_pred EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCc-----hhhcccccceEEEECCCCCCHH
Confidence 9999999999999988 6 6799999999999999988643321 1234678899999999999999
Q ss_pred HHHHHHHHhCCccccccccccccccccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 319 VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 319 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+.+.+.+.+|.+++|.||+||+++.++.........+++|+|++|++++|+|.|
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~ 341 (505)
T 3nyq_A 288 DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEED 341 (505)
T ss_dssp HHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC---
T ss_pred HHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCC
Confidence 999999999999999999999997776655556677899999999999999964
No 26
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=5.3e-48 Score=382.36 Aligned_cols=337 Identities=17% Similarity=0.190 Sum_probs=272.3
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+++.|.++++ ||++|++++++++||+||.++++++|+.|++. |+++||+|+++++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~ 87 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE 87 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence 478899999988 99999999999999999999999999999994 99999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH-----HHHHHHHhhcC-CcccccCCCCCCCCCcc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT 154 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (372)
++++++||+++|++++|+++.++.+++.++++++++++++++.... ........... .................
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence 9999999999999999999999999999999999999999987543 22222222211 11111111110000000
Q ss_pred cc-cccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHH-HHHH
Q 017382 155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (372)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~ 232 (372)
.. ............++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence 00 000111123345789999999999999999999999999999999989999999999999999999988854 5888
Q ss_pred HHHcCceEEEcCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecC
Q 017382 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (372)
Q Consensus 233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG 312 (372)
+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+..... ....+++++|.+++||
T Consensus 248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG 311 (617)
T ss_dssp HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence 9999999999999999998888 78899999999999999998763221 1123688999999999
Q ss_pred CCCCHHHHHHHHHHhCCccccccccccccccccCCCCC-CCCCCcccccC-CCceEEEeecC
Q 017382 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVSMILLL 372 (372)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~svG~p~-~g~~i~Ivd~d 372 (372)
+++++++.+.|.+.+|++++|.||+||++..++..... .....++|+|+ ++++++|+|.+
T Consensus 312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~ 373 (617)
T 3rg2_A 312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAE 373 (617)
T ss_dssp SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTT
T ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCC
Confidence 99999999999999999999999999998665533221 23346899998 78899999964
No 27
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2e-48 Score=378.34 Aligned_cols=325 Identities=17% Similarity=0.247 Sum_probs=263.7
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHh
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~ 80 (372)
+|+.+.|.++++++|+++|+++.++++||+||.++++++|+.|.+ .|+++||+|+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDS-----------------LALLAKSPVLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCCEEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence 468999999999999999999999999999999999999999999 499999999999999999
Q ss_pred HHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCcccccccc
Q 017382 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (372)
Q Consensus 81 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (372)
++++++||+++|++++|+++.++.+++.+++++++++++|++++....+.. ........ . .........
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~~~---~--~~~~~~~~~ 135 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSLSE---I--ESAKLAEMP 135 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEHHH---H--HHHHHHTCC
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccchhh---h--hhcccccCC
Confidence 999999999999999999999999999999999999999998753211000 00000000 0 000000001
Q ss_pred cccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh--cccCCCCeEEEecCchhHHHHHHHHHHHHHcCc
Q 017382 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (372)
Q Consensus 161 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~ 238 (372)
........++++++|+|||||||.||+|++||+++...+...... +.+...+++++..|++|..++. .++.++..|+
T Consensus 136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 112234567899999999999999999999999999887777665 6778999999999999999885 5888899999
Q ss_pred eEEEcCCC---chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCC
Q 017382 239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (372)
Q Consensus 239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~ 315 (372)
++++.+.+ ++..+++. +.++++|++.++|+++..+..... ....+++++|.+++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l 276 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL 276 (521)
T ss_dssp EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence 99999875 77888887 788999999999999998876522 2335788999999999999
Q ss_pred CHHHHHHHHHHh-CCccccccccccccccccCCCC-----CCCCCCcccccCCCceEEEeecC
Q 017382 316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 316 ~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++++.+.+.+.| ++++++.||+||+++.++.... .....+++|+|+||++++|+|++
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~ 339 (521)
T 3l8c_A 277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDED 339 (521)
T ss_dssp CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTT
T ss_pred CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCC
Confidence 999999999998 8999999999999876543211 12356789999999999999974
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.7e-48 Score=383.02 Aligned_cols=334 Identities=19% Similarity=0.305 Sum_probs=269.0
Q ss_pred CHHHHHHHHhCCcCCCceEEEeC----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcC
Q 017382 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~ 76 (372)
+|+.+.|.++++++||++|+++. ++++||+||.++++++|+.|++. |+++||+|+++++
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~ 73 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA 73 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence 57899999999999999999863 58999999999999999999994 9999999999999
Q ss_pred CCHhHHHHHHHHHhhCceeeeCCCCC---CHHHHHHHHhhCCceEEEeccchHHHHHHHH-hhcCCcccccCCCCCCCCC
Q 017382 77 PSFEFVAGVLGTWFSGCIAVPLALSY---PESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGAKFSLIPPVPNVSSE 152 (372)
Q Consensus 77 n~~~~~~~~~A~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (372)
|++++++++|||+++|++++|+++.. +.+++.++++.+++++++++.+..+.+.... .... ....+. .....
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~ 149 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-KFLKIP---AIALE 149 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-EETTEE---EEEGG
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-cccccc---eeech
Confidence 99999999999999999999999988 4578999999999999999987665543221 1111 000000 00000
Q ss_pred cccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHH
Q 017382 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA 232 (372)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 232 (372)
................++++++|+|||||||.||||++||+++...+......+++.++|++++++|++|..++...++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00000111112334567899999999999999999999999999999999999999999999999999999999766888
Q ss_pred HHHcCceEEEcCCC----chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEE
Q 017382 233 PLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308 (372)
Q Consensus 233 ~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v 308 (372)
+++.|+++++.+.+ ++..+++. ++++++|++.++|+++..+.+.+.. ......+++++|.+
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~lr~~ 294 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIRE-----EKKEGLDLSSWVTA 294 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCG-----GGGTTCCCTTCCEE
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhh-----hhccCCCchhhHHH
Confidence 99999999999876 78888888 7889999999999999998875432 12344578999999
Q ss_pred EecCCCCCHHHHHHHHHHhC------CccccccccccccccccCCC---------------------------CCCCCCC
Q 017382 309 MCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPL---------------------------RGARKAG 355 (372)
Q Consensus 309 ~~gG~~~~~~~~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~---------------------------~~~~~~~ 355 (372)
++||+++++++.+.|.+.|+ .+++|.||+||++++++... .......
T Consensus 295 ~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (590)
T 3kxw_A 295 FNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLV 374 (590)
T ss_dssp EECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEE
T ss_pred hhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEe
Confidence 99999999999999999883 37999999999987655321 1123457
Q ss_pred cccccCCCceEEEeecC
Q 017382 356 TVGNPLPGVQVSMILLL 372 (372)
Q Consensus 356 svG~p~~g~~i~Ivd~d 372 (372)
++|+|+++ ++|+|.|
T Consensus 375 ~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 375 SSGNPIQE--VKIIDPD 389 (590)
T ss_dssp CCCEESSE--EEEECTT
T ss_pred ccCCCCCC--eEEEcCC
Confidence 89999998 8888864
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.1e-47 Score=373.60 Aligned_cols=332 Identities=18% Similarity=0.240 Sum_probs=272.5
Q ss_pred HHHHHHHHhCCcCCCceEEEeC---CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC
Q 017382 2 EVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (372)
Q Consensus 2 ~~~~~l~~~a~~~~~~~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~ 78 (372)
|+.+.|.++++.+|+.+++... ++++||+||.++++++|+.|++ +|+++||+|+++++|+
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-----------------LNLKKGDRVALIAETS 84 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCEEEEECCSS
T ss_pred cHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence 6889999999999999998753 4799999999999999999999 4999999999999999
Q ss_pred HhHHHHHHHHHhhCceeeeCCCCCC-------HHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCC
Q 017382 79 FEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS 151 (372)
Q Consensus 79 ~~~~~~~~A~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (372)
++++++++||+++|++++|+++.++ .+++.++++.++++++|++++..+.+................
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~------ 158 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHA------ 158 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHH------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchh------
Confidence 9999999999999999999999998 789999999999999999998877776654433211110000
Q ss_pred CcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh-cccCCCCeEEEecCchhHHHHHHHH
Q 017382 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNAL 230 (372)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~~~~~~~~~~ 230 (372)
.... ............++++++|+|||||||.||||+++|+++..++...... +++.++|++++++|++|..++...+
T Consensus 159 ~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 159 WFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp HHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred hhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 0000 0000111223457899999999999999999999999999988877654 7899999999999999999997777
Q ss_pred HHHHHcCceEEEcCC----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCce
Q 017382 231 LAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306 (372)
Q Consensus 231 ~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr 306 (372)
+.++..|+++++.+. +++..+++. ++++++|+++++|+++..+.+.+.. ......+++++|
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~lr 302 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKL----------ISKNRGTVSVAPPFGYELCQRRVNE-----KDLAELDLSCWR 302 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHH----------HHHTTCCEEEECHHHHHHHHHSCCH-----HHHTTCCCTTCC
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHH----------HHHhCCeEEEcCHHHHHHHHHHhcc-----cccccCChhhhH
Confidence 888999999999875 688888888 7889999999999999888765432 334556789999
Q ss_pred EEEecCCCCCHHHHHHHHHHh------CCccccccccccccccccCCCCCC----------------------------C
Q 017382 307 LMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVMAISNPLRGA----------------------------R 352 (372)
Q Consensus 307 ~v~~gG~~~~~~~~~~~~~~~------~~~l~~~YG~tE~~~~~~~~~~~~----------------------------~ 352 (372)
.+++||+++++++.+.|.+.| +.++++.||+||++++++...... .
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 999999999999999999988 678999999999987665322110 0
Q ss_pred CCCcccccCCCceEEEeecC
Q 017382 353 KAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 353 ~~~svG~p~~g~~i~Ivd~d 372 (372)
...++|+|+|+++++|+|.+
T Consensus 383 ~~~~~G~p~~~~~~~i~d~~ 402 (576)
T 3gqw_A 383 TFVNCGKALPEHGIEIRNEA 402 (576)
T ss_dssp EEEBCCEECTTCEEEEECTT
T ss_pred ceeecCCcCCCCeEEEECCC
Confidence 12379999999999999964
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.6e-47 Score=370.10 Aligned_cols=325 Identities=17% Similarity=0.197 Sum_probs=253.5
Q ss_pred CHHHHHHHHhCCcCCCceEEEeCC----------ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCE
Q 017382 1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (372)
Q Consensus 1 m~~~~~l~~~a~~~~~~~al~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~ 70 (372)
||+.+.|.++++++||++|+++.+ +++||+||.++++++|+.|.+. |+ +||+
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~ 81 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA 81 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence 688999999999999999998642 7899999999999999999984 88 7999
Q ss_pred EEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCC
Q 017382 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (372)
Q Consensus 71 V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (372)
|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++....+ ........+... ...
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~ 155 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK-NQS 155 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT-CHH
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc-chh
Confidence 99999999999999999999999999999999999999999999999999986542211 000000000000 000
Q ss_pred CCcccccccccccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhh--------cccCCCCeEEEecCchh
Q 017382 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH 222 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~~ 222 (372)
..................++++++|+|||||||.||||+++|+++...+...... +.+...+++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 0000000001111223456788999999999999999999999998877765543 34778899999999999
Q ss_pred HHHHHHHHHHHHHcCceEEEcCCCc-hhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhh
Q 017382 223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (372)
Q Consensus 223 ~~~~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 301 (372)
..++. .++.++..|+++++.+.+. ++.+++. ++++++|++.++|+++..+... ..+
T Consensus 236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~ 292 (562)
T 3ite_A 236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED 292 (562)
T ss_dssp THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence 98885 5788899999999987654 4556666 7889999999999988765332 236
Q ss_pred ccCceEEEecCCCCCHHHHHHHHHHhCCccccccccccccccccC-CCCCCCCCCcccccCCCceEEEeecC
Q 017382 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 302 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
++++|.+++||+++++++.+.|.+.++++++|.||+||+++.++. ........+++|+|+++++++|+|+|
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 364 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPG 364 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTT
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCC
Confidence 789999999999999999999998889999999999999865543 22234566889999999999999864
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.4e-45 Score=388.18 Aligned_cols=322 Identities=21% Similarity=0.317 Sum_probs=263.2
Q ss_pred HHHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH
Q 017382 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (372)
Q Consensus 2 ~~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~ 81 (372)
++++.|.++++++||++|++++++++||+||.++++++|+.|++. |+++|++|+|+++|++++
T Consensus 465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~ 527 (1304)
T 2vsq_A 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL 527 (1304)
T ss_dssp CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence 578999999999999999999999999999999999999999994 999999999999999999
Q ss_pred HHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHHHhhcCCcccccCCCCCCCCCccccccccc
Q 017382 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (372)
Q Consensus 82 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (372)
+++++|++++|++++|++|.++.+++.++++++++++++++.+..+.+.... .....+.+... ... .....
T Consensus 528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~~~------~~~-~~~~~ 598 (1304)
T 2vsq_A 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFIDDQ------TRF-EEQAS 598 (1304)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESSCG------GGG-GSCSS
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEeccc------ccc-ccccC
Confidence 9999999999999999999999999999999999999999875432211000 00011111100 000 00111
Q ss_pred ccccCCCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEE
Q 017382 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (372)
Q Consensus 162 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 241 (372)
.......++++|+|+|||||||+||||+++|+++.+. ......+++.++|+++...|++|..+.+ .++.+++.|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence 1223456789999999999999999999999999865 4445567888999999999999998885 6899999999999
Q ss_pred EcCC---CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHH
Q 017382 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (372)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~ 318 (372)
+.+. .++..+++. ++++++|+++++|+++..+.+.. ...++++|.+++|||+++++
T Consensus 677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP 735 (1304)
T ss_dssp ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence 9985 678888888 78899999999999999987641 12457899999999999999
Q ss_pred HHHHHHHHhC-CccccccccccccccccCCC----CCCCCCCcccccCCCceEEEeecC
Q 017382 319 VMQQWETITG-HRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 319 ~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~----~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+.+.|.+.++ .+++|.||+||+++.++... .......++|+|++|++++|+|.+
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~ 794 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQ 794 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTT
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCC
Confidence 9999998884 68999999999987654221 123345789999999999999964
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.96 E-value=7.1e-30 Score=235.73 Aligned_cols=179 Identities=19% Similarity=0.251 Sum_probs=153.8
Q ss_pred CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCCch
Q 017382 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248 (372)
Q Consensus 169 ~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 248 (372)
.+++++|+|||||||.||||++||+++.+++......++++++|++++++|++|++|+. .++.++..|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc-
Confidence 47899999999999999999999999999999999999999999999999999999996 5778899999998876431
Q ss_pred hHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHHhC
Q 017382 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG 328 (372)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~ 328 (372)
..++. ++++++|++.++|+++..+++... ...++++||.+++||+++++++.+++.+ ++
T Consensus 114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~ 172 (358)
T 4gs5_A 114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA 172 (358)
T ss_dssp -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence 12233 889999999999999999987532 2347899999999999999999999986 59
Q ss_pred CccccccccccccccccCCCCCCCCCCcccccCCCceEEEee
Q 017382 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVSMIL 370 (372)
Q Consensus 329 ~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p~~g~~i~Ivd 370 (372)
.+++|.||+||++..++.........+++|.|.||+++++.+
T Consensus 173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~ 214 (358)
T 4gs5_A 173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE 214 (358)
T ss_dssp SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred ceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence 999999999999876664444456678899999999998754
No 33
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=1.3e-27 Score=221.85 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=147.7
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHHcCceEEE
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~~l~~G~~~~~ 242 (372)
..++++++|+|||||||.||+|.++|+++...+.... ..+++.++|++++.+|+ +|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 3678899999999999999999999999998887543 45577899999999999 99999864 555688898 667
Q ss_pred cCCCchh-----------------------HHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhh
Q 017382 243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (372)
Q Consensus 243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 299 (372)
...+++. .+++. ++++++|++.++|+++..|++.. ....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence 7777777 55556 78899999999999999998762 2233
Q ss_pred hhccCceEEEecCCCCCHHHHHHHH-HHh-CCccccccccccccccccCCCCCCCCCCccccc------CCCceEEEeec
Q 017382 300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVSMILL 371 (372)
Q Consensus 300 ~~l~~lr~v~~gG~~~~~~~~~~~~-~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~svG~p------~~g~~i~Ivd~ 371 (372)
.+++++|.+++||+++++++.+.+. +.| +++++|.||+||+++++..... .++|+| +|+++++|+|+
T Consensus 228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~ 302 (369)
T 3hgu_A 228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDS 302 (369)
T ss_dssp HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECT
T ss_pred cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECC
Confidence 5678999999999999999999999 899 8999999999999866542211 158999 99999999997
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.94 E-value=5e-27 Score=222.75 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=151.5
Q ss_pred CCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh---hcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCC
Q 017382 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246 (372)
Q Consensus 170 ~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~ 246 (372)
+++++|+|||||||.||+|+++|+++...+..... .+++.++|++++..|++|..+.+..++.++..|+++++.+.+
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 78999999999999999999999999877666533 447889999999999987766666678889999999999999
Q ss_pred chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHHHHHH
Q 017382 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI 326 (372)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~ 326 (372)
++..+++. ++++++|+++++|+++..+++...... ....++++|.+++||+++++++.+.|.+.
T Consensus 166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 229 (436)
T 3qov_A 166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRKIERM 229 (436)
T ss_dssp CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence 99999998 788999999999999999988633211 11137899999999999999999999999
Q ss_pred hCCcccccccccccccc-ccCCCCCCCCCCcccccCCCceEEEeec
Q 017382 327 TGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 327 ~~~~l~~~YG~tE~~~~-~~~~~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
||++++|.||+||+++. ...... .....|.|.++++++|+|+
T Consensus 230 ~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 230 LNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp HTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECT
T ss_pred hCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEEC
Confidence 99999999999999543 322111 1223677888999999994
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.93 E-value=9.9e-26 Score=213.90 Aligned_cols=186 Identities=18% Similarity=0.067 Sum_probs=150.1
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHH---hhcccCCCCeEEEecCc-hhHHHHHHHHHHHHHcCceEEE
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~~l~~G~~~~~ 242 (372)
..++++++|+|||||||.||+|++||+++...+.... ..++++++|++++..|+ .|..++. .++.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence 3568899999999999999999999999887665443 35678899999999999 6777764 57888999999999
Q ss_pred cCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHH
Q 017382 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~ 322 (372)
.+.++++.+++. ++++++|+++++|+++..+++...... ....++++|.+++||+++++++.+.
T Consensus 166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~ 229 (437)
T 2y27_A 166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRVA 229 (437)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHHH
Confidence 998999999998 788899999999999999987632111 0113589999999999999999999
Q ss_pred HHHHhCCccccccccccc-cc-cccCCCCCCCCCCcccccCCCceEEEeecC
Q 017382 323 WETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVSMILLL 372 (372)
Q Consensus 323 ~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~svG~p~~g~~i~Ivd~d 372 (372)
+.+.||+++++.||+||+ +. +...... .....+.|.++++++|+|+|
T Consensus 230 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~ 278 (437)
T 2y27_A 230 IEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPE 278 (437)
T ss_dssp HHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTT
T ss_pred HHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCC
Confidence 999999999999999997 43 3322221 11125677899999999953
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.93 E-value=9.5e-26 Score=214.41 Aligned_cols=185 Identities=19% Similarity=0.119 Sum_probs=149.0
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh---hcccCCCCeEEEecCch-hHHHHHHHHHHHHHcCceEEE
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEF 242 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-~~~~~~~~~~~~l~~G~~~~~ 242 (372)
..++++++|+|||||||.||+|+++|+++......... .+++.++|++++..|++ |..++. .++.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEEE
Confidence 45688999999999999999999999998876554433 56788999999999994 666664 57888999999999
Q ss_pred cCCCchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHhhhhccHHHHHhhhhhccCceEEEecCCCCCHHHHHH
Q 017382 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~ 322 (372)
.+.++++.+++. ++++++|+++++|+++..|++...... ....++++|.+++||+++++++.+.
T Consensus 168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~ 231 (443)
T 2y4o_A 168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRNE 231 (443)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHHH
Confidence 999999999988 788899999999999999987632111 0113589999999999999999999
Q ss_pred HHHHhCCccccccccccccc--cccCCCCCCCCCCcccccCCCceEEEeec
Q 017382 323 WETITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVSMILL 371 (372)
Q Consensus 323 ~~~~~~~~l~~~YG~tE~~~--~~~~~~~~~~~~~svG~p~~g~~i~Ivd~ 371 (372)
|.+.||+++++.||+||+++ +...... ...+ .+.|.++++++|+|+
T Consensus 232 ~~~~~g~~v~~~YG~TE~~g~~~~~~~~~--~~~g-~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 232 VETRVGIDALDIYGLSEVMGPGVACECVE--TKDG-PVIWEDHFYPEIIDP 279 (443)
T ss_dssp HHHHHTCEEEEEEEETTTTEEEEEEECTT--TCCS-EEECTTTEEEEEECT
T ss_pred HHHHhCcCEEeccCchhhcCCeEEeccCC--CCCc-eEEccCCeEEEEEcC
Confidence 99999999999999999743 2222211 1112 566778999999995
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=91.43 E-value=0.42 Score=45.92 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCCCcEEEEecCCCC-CCCceeeeehhhHHH
Q 017382 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (372)
..++.+.+...||||| |++|-+.+|...+..
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 4567778999999999 789999999998754
No 38
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.00 E-value=1.6 Score=40.23 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=71.2
Q ss_pred ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~ 102 (372)
..+|.+.+...+..+++.+.. .|+.++|++...++.+ ...+...++++..|+.+++.+..
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 169 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG- 169 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence 368999998888777777766 4899999999988863 33345567888999999887664
Q ss_pred CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
+.+.+...+++.++.+++..+.....+.+.
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 788889999999999999988777665543
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.78 E-value=2.2 Score=39.30 Aligned_cols=90 Identities=17% Similarity=0.078 Sum_probs=72.6
Q ss_pred ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~ 102 (372)
..+|.+.+...+..++..+.. .++.++|++...++-+ ...+...++++..|+.+++.+..
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 468999998888888888877 4899999999988754 44455678889999998887655
Q ss_pred CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
.++.+...+++.++.+++..+.....+.+.
T Consensus 166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 678888999999999999998877666544
No 40
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.67 E-value=1.8 Score=40.01 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=71.4
Q ss_pred ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeCCCCC
Q 017382 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l~~~~ 102 (372)
..+|.+.+...+..+++.+.. .|+.++|++...++.+ ...+...++++..|+.+++.+..
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 171 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG- 171 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence 358999998888877777766 4899999999988864 33445678888899998888765
Q ss_pred CHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
..+.+...+++.++.+++..+.....+.+.
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDE 201 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence 788888999999999999888776655543
No 41
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.38 E-value=9.2 Score=35.73 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=73.7
Q ss_pred cCCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-H
Q 017382 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-V 82 (372)
Q Consensus 13 ~~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~ 82 (372)
..++.+|++. .+..+|.+.+...+......+ ++.++|++...+|-...+ +
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--------------------GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--------------------CCCTTCEEEECSCTTSHHHH
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--------------------CCCccCEEEEeCcHHHHHHH
Confidence 3567777764 124689998887766655433 788999999988876433 3
Q ss_pred HHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 83 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
..+++++..|+..+..+. .+++.+...+++.++.++...+.....+.+.
T Consensus 220 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp HHHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 346778888998888764 6788899999999999999998877766544
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=82.77 E-value=15 Score=34.39 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.|+.+|++. ..-.+|++.+...+..+...+ +++++|++...++-+...- ..+++++..|+..+..+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI--ELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCCEEEecC
Confidence 467777764 125799999988777776555 7889999999988765543 35888999999999887
Q ss_pred CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (372)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 285 (372)
.. +.+.+... ++..++..++..+.....+.+
T Consensus 88 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 88 YRLNADEIAFV----------LGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TTSCHHHHHHH----------HHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHH----------HHhcCceEEEECcchhhhHHh
Confidence 64 45555444 667789999988877666443
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.60 E-value=12 Score=35.32 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (372)
Q Consensus 14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~- 83 (372)
.|+.+|++. .+..+|.+.+...+......+ ++.++|++...+|-...+-.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~ 239 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLS 239 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhh
Confidence 456677663 124689998877766554433 77889999988887644433
Q ss_pred --HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 84 --~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
.+++.+..|+..+..+. ..++.+...+++.++.++...+.....+.+.
T Consensus 240 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 240 SPGVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp SSHHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 47888889998887654 5788899999999999999988776665443
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=81.74 E-value=14 Score=35.04 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++....+..+ -..-.+|+..+...+..+...+ +++++|++...++-+...- ..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV--MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHHHHhCCEEEccC
Confidence 4677887765422111 1125689999888777766544 7889999999988765543 35888999999999887
Q ss_pred CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (372)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 285 (372)
.. ..+.+... ++..++..++..+.....+..
T Consensus 109 ~~~~~~~l~~i----------l~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHI----------LNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHH----------HHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHH----------HHhcCCCEEEEChHHHHHHHH
Confidence 64 45555444 667789998888877766544
No 45
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=81.16 E-value=16 Score=34.56 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (372)
Q Consensus 14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~- 83 (372)
.++.+|++. .+..+|.+.+...+...+..+ ++.++|++...+|....+-.
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--------------------GLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--------------------CCCCCCeEEEecCcceEeecc
Confidence 456777764 124699999887776665443 78899999999887654433
Q ss_pred --HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382 84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (372)
Q Consensus 84 --~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (372)
.+++.+..|+..+..+. ..+..+...+++.++.++...+.....+.+
T Consensus 249 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp SSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred hHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 36788888988887754 477888889999999999998876655543
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=80.07 E-value=13 Score=35.20 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=70.2
Q ss_pred CceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHH--HH
Q 017382 16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV--AG 84 (372)
Q Consensus 16 ~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~--~~ 84 (372)
+.+|++. .+..+|.+.+...+......+.. .++.++|++...+|-...+- ..
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence 7777764 13469999887766555443322 37889999998888764433 23
Q ss_pred HHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (372)
Q Consensus 85 ~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (372)
+++.+ .|+..+..+ ...++.+...+++.++.+++..+.....+.+
T Consensus 255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 56666 898888776 4678889999999999999998877666543
No 47
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=79.45 E-value=11 Score=35.67 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~ 243 (372)
..++.+|++.... | -.+|+..+...+..+...+ +++++|++...++-+...- ..+++++..|+..+..
T Consensus 34 ~~p~~~a~~~~~~---~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 34 NHSSKPCLINGAN---G----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV--LAFLGASHRGAIITAA 104 (536)
T ss_dssp GSTTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEEC
T ss_pred cCCCceEEEECCC---C----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH--HHHHHHHHhCCEEecc
Confidence 3567787764322 2 4689999987777766544 7889999999988875543 3578899999998888
Q ss_pred CCC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382 244 PKF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (372)
Q Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 285 (372)
+.. .++.+... ++..++..++..+.....+.+
T Consensus 105 ~~~~~~~~l~~~----------l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKH----------AKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHH----------HHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHH----------HHhcCCEEEEEChHHHHHHHH
Confidence 764 45555444 667789998888776665543
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=78.56 E-value=8.7 Score=34.23 Aligned_cols=86 Identities=8% Similarity=-0.084 Sum_probs=61.2
Q ss_pred ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCH--hHHHHHHHHHhhCceeeeCCCCC
Q 017382 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSY 102 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~--~~~~~~~A~~~~G~~~v~l~~~~ 102 (372)
..+|.+.+...+...+..+.. .|+.++|++...+|-+. -.....+++...|+.+++.. +
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~ 169 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQH-----------------RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--I 169 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTT-----------------STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--C
T ss_pred EEECHHHHHHHHHHHHhhHHh-----------------hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--C
Confidence 458888888877766666655 48999999999988732 23344555588898655543 3
Q ss_pred CHH-----------------------HHHHHHhhCCceEEEeccchHHHH
Q 017382 103 PES-----------------------ELLHVMHDSDISMVLSTEDYREVL 129 (372)
Q Consensus 103 ~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 129 (372)
.+. ++...+++.++.+++..+.....+
T Consensus 170 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 170 DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 444 667788999999999887665543
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.23 E-value=6.7 Score=37.26 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCC
Q 017382 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245 (372)
Q Consensus 169 ~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~ 245 (372)
++.++++.+..+.++ ..+|+..+...+..+...+ +++++|++...++-+.-.- ..+++++..|+..+..+.
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF--MPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH--HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH--HHHHHHHHcCCEEeecCC
Confidence 456666544444333 4699999988777766554 7889999999988765543 357888999999888765
Q ss_pred -CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHH
Q 017382 246 -FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (372)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 285 (372)
+..+.+... ++..++.+++..+.....+.+
T Consensus 108 ~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 IYNERELLNS----------MNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp TCCHHHHHHH----------HHHHCCSEEEECGGGHHHHHH
T ss_pred cCCHHHHHHH----------HHhcCCeEEEEcHHHHHHHHH
Confidence 555555555 666788988888877766544
No 50
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=76.70 E-value=20 Score=33.82 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++....+ ....+|+..+...+..+...+ +++++|++...++-+.-.- ..+++++..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL--EAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH--HHHHHHHhcCcEEEecC
Confidence 4567777643211 235789999887777666544 7889999999988765543 35788999999999887
Q ss_pred C-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHH
Q 017382 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (372)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 284 (372)
. +..+.+... ++..++..++..+.....+.
T Consensus 104 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 104 PRLSPKEIAYI----------LNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECGGGHHHHH
T ss_pred cccCHHHHHHH----------HHhCCCcEEEEChhHHHHHH
Confidence 5 455555554 66678898888887665543
No 51
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=74.29 E-value=22 Score=32.72 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.|+.+|++.........-....+|+..+...+..++..+ +. ++|++...++-+.-.- ..+++++..|+..+.++
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV--VAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH--HHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH--HHHHHHHHhCcEEEeeC
Confidence 567888776543211112346799999988887777655 43 8999998888765543 35788999999999886
Q ss_pred C----CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHHHh
Q 017382 245 K----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286 (372)
Q Consensus 245 ~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 286 (372)
. ...+.+... ++..++..++..+.....+.+.
T Consensus 114 ~~~~~~~~~~l~~i----------l~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 114 VPQGGVTDERSDSV----------LSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp SCCSCTTCCHHHHH----------HHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCccchHHHHHHH----------HHhCCCCEEEeChhHHHHHHHH
Confidence 4 334555444 5567888888888777666543
No 52
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=73.71 E-value=46 Score=31.97 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (372)
Q Consensus 14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~- 83 (372)
.++.+|++. .+..+|.+.+...+......+ ++.++|++...+|-...+-.
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~p~~~~~~~~ 241 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC--------------------QFTQQTRYLCAIPAAHNYAMS 241 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc--------------------CCCCcceEEEeccchhhhhhh
Confidence 356777763 135699998887776655544 77889999999886544433
Q ss_pred --HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHHH
Q 017382 84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (372)
Q Consensus 84 --~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (372)
..++.+..|+..+..+. .....+...+++.++.++...+.....+.+.
T Consensus 242 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 242 SPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp SSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 46788888988887754 4677788899999999999988776655443
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.45 E-value=12 Score=35.02 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=70.0
Q ss_pred CCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-HH
Q 017382 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VA 83 (372)
Q Consensus 14 ~~~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~~ 83 (372)
.++.+|++. . +..+|.+.+...+......+ ++.++|++...+|-+..+ +.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~ 201 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--------------------NLQTGQVFLNQAPFSFDLSVM 201 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT--------------------TCCSSCEEEECSCTTSGGGHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc--------------------CCCCCCEEEEeCCccHhHHHH
Confidence 456677663 1 24689998887665554433 788999999998876433 34
Q ss_pred HHHHHHhhCceeeeCCCC--CCHHHHHHHHhhCCceEEEeccchHHHH
Q 017382 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (372)
Q Consensus 84 ~~~A~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (372)
..++.+..|+..+.++.. ..+..+...+++.++.++...+.....+
T Consensus 202 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 577888899988888753 4677888889999999999887765543
No 54
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=72.63 E-value=15 Score=35.10 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=70.7
Q ss_pred CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHH-
Q 017382 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (372)
Q Consensus 14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~- 83 (372)
.++.+|++. .+..+|.+.+...+......+ ++.++|++...+|-...+-.
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF--------------------HMNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh--------------------CCCCcCeEEEecCCCcchhhH
Confidence 466777764 124699999988777665543 78899999999998765543
Q ss_pred -HHHHHHhhCceeeeCCCCC---CHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382 84 -GVLGTWFSGCIAVPLALSY---PESELLHVMHDSDISMVLSTEDYREVLQN 131 (372)
Q Consensus 84 -~~~A~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (372)
.+++.+..|+..+..++.. .+..+...+++.++.++.........+.+
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 3678888899888876532 45667788888899888877665555443
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=72.46 E-value=27 Score=32.73 Aligned_cols=96 Identities=6% Similarity=0.066 Sum_probs=69.7
Q ss_pred CCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHH
Q 017382 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84 (372)
Q Consensus 14 ~~~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~ 84 (372)
.|+.+|++. . +..+|.+.+...+..+...+ ++.++|++...+|-...+-..
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--------------------DVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS--------------------CCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc--------------------CCCCCCEEEEeCchHHHHHHH
Confidence 356777663 1 24699999887776655443 788899999998877544433
Q ss_pred --HHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382 85 --VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (372)
Q Consensus 85 --~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (372)
+++.+ .|+..+..+ ...+..+...+++.++.++...+.....+..
T Consensus 228 ~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 228 TVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp HHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 44444 888887775 5688889999999999999998877665543
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=71.40 E-value=13 Score=34.72 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=69.5
Q ss_pred CCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-HH
Q 017382 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VA 83 (372)
Q Consensus 14 ~~~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~~ 83 (372)
.++.+|++. . +..+|.+.+...+..+...+ ++.++|++...+|-+..+ +.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~~~~ 200 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF--------------------PVSGGKIFLNQAPFSFDLSVM 200 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS--------------------TTTTTCEEEECSCTTSTHHHH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc--------------------CCCccceEEEeCCccHHHHHH
Confidence 456677663 1 24689998877666554433 778899999998877443 34
Q ss_pred HHHHHHhhCceeeeCCCC--CCHHHHHHHHhhCCceEEEeccchHHHH
Q 017382 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (372)
Q Consensus 84 ~~~A~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (372)
.++.++..|+..+..+.. ..+..+...+++.++.+++..+.....+
T Consensus 201 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 567888899988877653 4677788889999999999888766544
No 57
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=71.19 E-value=22 Score=33.18 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=66.8
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++..+.++...+ +-.+|+..+...+..+...+ +++++|++...++-+...- ..+++++..|+..+..+
T Consensus 13 ~p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 13 LDDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL--VLYLATVRAGGVYLPLN 84 (503)
T ss_dssp CSCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH--HHHHHHHHcCcEEEecC
Confidence 3455666554332 23689999988777766544 7889999999988875543 35889999999999887
Q ss_pred CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchHHHH
Q 017382 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281 (372)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~ 281 (372)
.. +.+.+... ++..++..++..+....
T Consensus 85 ~~~~~~~l~~i----------l~~~~~~~vi~~~~~~~ 112 (503)
T 4fuq_A 85 TAYTLHELDYF----------ITDAEPKIVVCDPSKRD 112 (503)
T ss_dssp TTCCHHHHHHH----------HHHHCCSEEEECGGGTT
T ss_pred CCCCHHHHHHH----------HHhcCCcEEEECchhhH
Confidence 64 44554444 56678888887765543
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=70.55 E-value=33 Score=32.65 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc----ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~ 243 (372)
.++.+|++.... .| ....+|+..+...+..+...+ +++++|++...++-+...- ..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW--LVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH--HHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEEec
Confidence 567788775431 12 235799999887776665543 6789999999988765543 3578889999998888
Q ss_pred CC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHH
Q 017382 244 PK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (372)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 284 (372)
+. +.++.+... ++..++..++..+.....+.
T Consensus 130 ~~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TIQMKSTDILYR----------LQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CTTCCHHHHHHH----------HHHHTCSEEEEETTTHHHHH
T ss_pred CCCCCHHHHHHH----------HHhcCCeEEEechHHHHHHH
Confidence 75 445555554 56678888888777665543
No 59
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=70.53 E-value=26 Score=33.25 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=65.8
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++.. .-.+|+..+...+..+...+ +++++|++...++-+.-.- ..+++++..|+..+..+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF--IGILAVLKAGGAYVPID 120 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH--HHHHHHHHhCCEEEEeC
Confidence 4567777631 13689999887777666544 7889999999988765443 35788999999999887
Q ss_pred C-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHH
Q 017382 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282 (372)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 282 (372)
. +..+.+... ++..++..++..+.....
T Consensus 121 ~~~~~~~l~~i----------l~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 121 IEYPKERIQYI----------LDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECGGGHHH
T ss_pred CCCcHHHHHHH----------HHhcCCCEEEEcCchhhh
Confidence 6 445555444 566678888777655443
No 60
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.30 E-value=25 Score=32.74 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=65.2
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.|+.+|++... + +..+|+..+...+..+...+ +++++|++...++-+...- ..+++++..|+..+..+
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV--IAILALHRLGAVPALLN 85 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH--HHHHHHHHHTCEEEEEC
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCcEEEecC
Confidence 45667766421 1 25799999988777766544 6889999999988775543 35788899999988776
Q ss_pred C-CchhHHHHHHHhhCCCCCCCCCcceeEeec--chHHHHHH
Q 017382 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTG--VPTMYTRL 283 (372)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~--~p~~~~~l 283 (372)
. ..++.+... +++.++..++. .+.....+
T Consensus 86 ~~~~~~~l~~~----------l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 86 PRLKSAELAEL----------IKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TTSCHHHHHHH----------HHHTTCSEEEECC--CHHHHH
T ss_pred CccChHHHHHH----------HhhcCCcEEEEecchhhhhhh
Confidence 5 455555555 55667777776 55544443
No 61
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=69.56 E-value=11 Score=33.68 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=63.8
Q ss_pred CCCceEEEe-----C----CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-HH
Q 017382 14 ARDSVAIRA-----D----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VA 83 (372)
Q Consensus 14 ~~~~~al~~-----~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~~ 83 (372)
+.|.+|++. . +..+|.+.+...+..++..+ +++++|++...+|-...+ +.
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~pl~h~~gl~ 94 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--------------------SLGPGTRALVCLNVGYIAGLM 94 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--------------------CCCCCCEEEEECChHHHHHHH
Confidence 356677763 1 24699999887766655443 888999999988876433 34
Q ss_pred HHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHH
Q 017382 84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130 (372)
Q Consensus 84 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (372)
.++..+..|+..+..++.... ...+++.++.++...+.....+.
T Consensus 95 ~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 95 MLVRGMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp HHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred HHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 455667778777766654332 34577889999988876665543
No 62
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=66.35 E-value=26 Score=33.43 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=68.2
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.|+.+|++..... | ....+|...+...+..++..+ +++++|++...++-+.-.- ..+++++..|+..+..+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~--~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW--YCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH--HHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH--HHHHHHHhCCEEEEeCC
Confidence 5788888765431 2 246789999887777666544 7889999999988775543 35888999999998876
Q ss_pred C-CchhHHHHHHHhhCCCCCCCCCcceeEeecchH
Q 017382 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (372)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~ 278 (372)
. +.++.+... +++.++..++..+.
T Consensus 143 ~~~~~~~l~~~----------l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 143 HMLKTRDIVYR----------IEKAGLKMIVCIAE 167 (580)
T ss_dssp TTCCHHHHHHH----------HHHHTCCEEEEESS
T ss_pred ccCCHHHHHHH----------HHhcCCCEEEEecc
Confidence 5 455555555 56667887776554
No 63
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=66.24 E-value=31 Score=33.44 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++.... .+| ..-.+|+..+...+..+...+ +++++|++...+|.+.-.-. .+++++..|+..+...
T Consensus 89 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vv--a~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAV--AMLACARIGAVHSVIF 163 (652)
T ss_dssp HTTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHH--HHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH--HHHHHHHcCcEEEecC
Confidence 467788775432 122 235799999988777766544 78899999999998765433 5788899998887775
Q ss_pred -CCchhHHHHHHHhhCCCCCCCCCcceeEeecch
Q 017382 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (372)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 277 (372)
.+.++.+... ++..++.+++...
T Consensus 164 ~~~~~~~l~~~----------l~~~~~~~li~~~ 187 (652)
T 1pg4_A 164 GGFSPEAVAGC----------IIDSSSRLVITAD 187 (652)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEEES
T ss_pred CCCCHHHHHHH----------HHhcCCCEEEEcC
Confidence 4677777666 5556677666644
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=63.57 E-value=38 Score=32.93 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHh----hcccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEE
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~ 242 (372)
..++.+|++.... .+| ....+|+..+...+..++. ..+++++|++...+|.+--.-. .+++++..|+..+.
T Consensus 94 ~~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~--a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 94 KTPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII--TLLAISRIGAIHSV 168 (663)
T ss_dssp TCTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH--HHHHHHHTTCEEEE
T ss_pred cCCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH--HHHHHHHcCCEEEe
Confidence 3577888876532 122 2356999998877766654 4467899999999998765433 57888999988887
Q ss_pred cC-CCchhHHHHHHHhhCCCCCCCCCcceeEeecchH
Q 017382 243 MP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (372)
Q Consensus 243 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~ 278 (372)
.. .+.++.+... ++..++.+++..+.
T Consensus 169 l~~~~~~~~l~~~----------l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 169 VFAGFSSNSLRDR----------INDGDSKVVITTDE 195 (663)
T ss_dssp CCTTSCHHHHHHH----------HHHHTCSEEEEESB
T ss_pred eCCCCCHHHHHHH----------HHhcCCeEEEEccc
Confidence 75 4677777766 55667777776554
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=63.25 E-value=31 Score=32.74 Aligned_cols=90 Identities=14% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++.- .-.+|+..+...+..+...+ +++++|++...++-+...-. .+++++..|+..+.++
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV--ALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH--HHHHHHHTTCEEEECC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH--HHHHHHHHCCEEEEcC
Confidence 5677777641 23689999988777766544 78899999999887765533 5788999999998887
Q ss_pred CC-chhHHHHHHHhhCCCCCCCCCcceeEeecchH
Q 017382 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278 (372)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~ 278 (372)
.. ..+.+... ++..++..++....
T Consensus 157 ~~~~~~~l~~~----------l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 157 PQFPVERLALS----------LEDTGAPLLVTSRP 181 (570)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECTT
T ss_pred CCChHHHHHHH----------HHhcCCCEEEecch
Confidence 64 45555544 45556666665543
No 66
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=63.02 E-value=29 Score=32.57 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.++.+|++.. | ..+|+..+...+..+...+ +++++|++...++-+...-. .+++++..|+..+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV--AFLGALYAGVVPVVAN 104 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH--HHHHHHHHTCEEEECC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH--HHHHHHHcCceEEecC
Confidence 4567776532 1 3689999888777766544 68899999999887755433 5788899999988876
Q ss_pred C-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHHH
Q 017382 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (372)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 284 (372)
. ++++.+... +++.++..++..+.....+.
T Consensus 105 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 105 TLLTPADYVYM----------LTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TTCCHHHHHHH----------HHHHTCSEEEEEGGGHHHHH
T ss_pred cccCHHHHHHH----------HhccCCeEEEechhhhhHHH
Confidence 5 455555555 56678888888777665543
No 67
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=62.07 E-value=65 Score=29.95 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=68.1
Q ss_pred CCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH--H
Q 017382 14 ARDSVAIRA--D-------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--V 82 (372)
Q Consensus 14 ~~~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~--~ 82 (372)
.++.+|++. . +..+|.+.+...+..+...+ ++.++|++...+|....+ +
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW--------------------QWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECCCTTSHHHHT
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh--------------------CCCCCcEEEEeccHHHHHHHH
Confidence 456677763 1 24699999988877666554 678899988888765333 3
Q ss_pred HHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchHHHHHH
Q 017382 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (372)
Q Consensus 83 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (372)
..+++.+..|+..+..+. ..++.+...+ +.++.+++..+.....+.+
T Consensus 213 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp TTTHHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 346888899998887754 5667777777 6788998888776655543
No 68
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=59.88 E-value=3.2 Score=39.98 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEecCCCC-CCCceeeeehhhHHH
Q 017382 166 GQRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (372)
Q Consensus 166 ~~~~~~~a~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (372)
...++.+.++..||||| |+||.+.+|...+..
T Consensus 95 il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 95 ILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 34567788999999999 889999999998755
No 69
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=58.45 E-value=23 Score=36.33 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~ 243 (372)
..++.+|++.-. +| -.+|+..+...+..+...+ +++++|++...+|-+.-. +..+++++..|+..+..
T Consensus 73 ~~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~--~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF--VLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH--HHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH--HHHHHHHHHcCCEEEee
Confidence 357788876432 22 4689999887777766544 788999999998877544 33578899999998887
Q ss_pred CC-CchhHHHHHHHhhCCCCCCCCCcceeEeecchHHHHHH
Q 017382 244 PK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (372)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 283 (372)
+. +.++.+... ++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQ----------AKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHH----------HHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHH----------HHHcCCeEEEEChHHHHHH
Confidence 65 555665555 6667889888877655443
No 70
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=53.47 E-value=4.8 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCCCCcEEEEecCCCC-CCCceeeeehhhHHH
Q 017382 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (372)
..++.+.+...||||| |++|-+.+|...+..
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 4566778999999999 789999999998755
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=52.52 E-value=73 Score=29.61 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=68.0
Q ss_pred CCCceEEEe---------CCceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhH-HH
Q 017382 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-VA 83 (372)
Q Consensus 14 ~~~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~-~~ 83 (372)
.++.+|++. .+..+|.+.+...+..+..... .++.+++++....+-+... +.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAA------------------FDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTT------------------TCCCSSCEEECCSCTTSGGGHH
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccc------------------cCCCCCCeEEecCCccHHHHHH
Confidence 456777764 1246899988766554433221 3778889888877766443 44
Q ss_pred HHHHHHhhCceeeeCCCC--CCHHHHHHHHhhCCceEEEeccchHHHH
Q 017382 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (372)
Q Consensus 84 ~~~A~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (372)
.++.++..|+..+..+.. .....+...+++.++.++...+.....+
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 567778889888877654 3677888899999999999887765543
No 72
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=50.90 E-value=74 Score=30.61 Aligned_cols=87 Identities=8% Similarity=-0.131 Sum_probs=60.1
Q ss_pred CCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcC
Q 017382 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 244 (372)
.|+.+|++.- .-.+|+..+...+..+...+ +++++|++..+++-+...- ..+++.+..|+..+.++
T Consensus 40 ~Pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v--va~lailkaGa~~vpld 108 (620)
T 4dg8_A 40 HPHREAIRDR---------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI--TCLLAILLSGHHYLYID 108 (620)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH--HHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEcC---------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH--HHHHHHHHhCCEEEeeC
Confidence 5677777641 12589999987777766554 7889999999988765543 35889999999999887
Q ss_pred CCchhHHHHHHHhhCCCCCCCCCcceeEee
Q 017382 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFT 274 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~ 274 (372)
...+..-+..+ ++..++.+++
T Consensus 109 ~~~p~~~l~~i---------l~~~~~~~vl 129 (620)
T 4dg8_A 109 LKQPAAWNAEL---------CRQVDCRLIL 129 (620)
T ss_dssp TTSCHHHHHHH---------HHHHTEEEEE
T ss_pred ccChHHHHHHH---------HHhCCCcEEE
Confidence 65444333333 4455666655
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=46.43 E-value=83 Score=29.57 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=61.1
Q ss_pred eeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEcCCC-c-------hhHHHHHHH
Q 017382 188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF-S-------VRGIWQRWR 256 (372)
Q Consensus 188 v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~-~-------~~~~~~~~~ 256 (372)
-.+|+..+...+..+...+ +++++|++...++-+.-.- ..+++++..|+..+..+.. . .+.+...
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~-- 123 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV--EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL-- 123 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH--
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH--HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH--
Confidence 5789999988777766554 6889999999988876543 3588899999998887643 2 2333333
Q ss_pred hhCCCCCCCCCcceeEeecchHHHHHHH
Q 017382 257 ESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (372)
Q Consensus 257 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 284 (372)
++..++..++........+.
T Consensus 124 --------l~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 124 --------LASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp --------HHHHCCSEEEECGGGHHHHH
T ss_pred --------HHhcCCCEEEecHHHHHHHH
Confidence 56678888888777665544
No 74
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=45.97 E-value=1.5e+02 Score=25.82 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=44.9
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 017382 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (372)
+++|+.|.+....+-.-..+-+++...|..++.+-|...+.+-...++..++.+++++..
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 478888766666677888888888888987665544444445567789999999999754
No 75
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=44.22 E-value=1.2e+02 Score=28.55 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=55.5
Q ss_pred CCCCcEEEEecCCCCCCC--ceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEE
Q 017382 168 RGEDPALIVYTSGTTGKP--KGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (372)
Q Consensus 168 ~~~~~a~i~~TSGtTG~p--K~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~ 242 (372)
.|+.+|++...+ ..+.. ..-.+|++.+...+..+...+ +. ++|++...++-+..+-. .+++++..|+..+.
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~--~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA--IIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH--HHHHHHHTTCEEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH--HHHHHHHhCCEEEe
Confidence 567787765432 22222 235789999988777776544 45 69999999888765433 58889999999988
Q ss_pred cCC-CchhHHHHH
Q 017382 243 MPK-FSVRGIWQR 254 (372)
Q Consensus 243 ~~~-~~~~~~~~~ 254 (372)
++. +..+.+...
T Consensus 109 l~~~~~~~~l~~~ 121 (562)
T 3ite_A 109 IEAGLPNDRKSFL 121 (562)
T ss_dssp CCTTSCHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 865 455555554
No 76
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=37.28 E-value=1.4e+02 Score=26.04 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=37.4
Q ss_pred cCCCCCEEEEEcCCCH------hHHHHHHH-HHhhCceeeeCCCCC------------CHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSF------EFVAGVLG-TWFSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~------~~~~~~~A-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 123 (372)
-+++||+|+|++|.+. +-+..-.. +-..|..++.-+.-. ..+++...+.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 6899999999999863 22222222 233476666433211 244667777788889999874
No 77
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=36.55 E-value=1.4e+02 Score=25.90 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=41.5
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++||+|+|....+.=..++.++....|+.++.+..+ ++. ....++.+++.+|..
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i~~ 215 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTINS 215 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEEEC
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEEeC
Confidence 589999999999886666677777766667777666543 343 456778888888854
No 78
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=35.70 E-value=70 Score=29.06 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeC
Q 017382 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPL 98 (372)
Q Consensus 32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l 98 (372)
+..+.+++|..+.+.+ +++++|+.|.|..+.. .-.-++.-++..+|+.++.+
T Consensus 4 ~~~~l~k~A~~~v~~~---------------~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVG---------------LNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp CHHHHHHHHHHHHHTT---------------TCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 3567778888888765 4999999999999866 33344556677889987754
No 79
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=35.70 E-value=1.3e+02 Score=26.41 Aligned_cols=59 Identities=10% Similarity=-0.090 Sum_probs=38.9
Q ss_pred ccCCCCCEEEEEcCCC-HhHHHHHHHHHhhCceee-eCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAV-PLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~-~~~~~~~~A~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|+|....+ .=..++.+| ...|+.++ ..+..-..++....+++.+++.++..
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHH-HHcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 4789999999999855 444444444 45687544 44444334445566778999888754
No 80
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=35.22 E-value=1.6e+02 Score=25.84 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=37.2
Q ss_pred cCCCCCEEEEEcCCCHh------HHHHHHHHH-hhCceeeeCCCCC------------CHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSFE------FVAGVLGTW-FSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~------~~~~~~A~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 123 (372)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+... ..+++...+.+-.+++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999999832 222222222 3577666432211 134566666777888898874
No 81
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.77 E-value=1.7e+02 Score=26.09 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=37.6
Q ss_pred cCCCCCEEEEEcCCCHh------HHHHHHHHH-hhCceeeeCCCCC------------CHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSFE------FVAGVLGTW-FSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~------~~~~~~A~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 123 (372)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+... ..+++...+.+-.+++|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999999742 222222222 3577666443211 144566666777888999864
No 82
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=33.57 E-value=2.4e+02 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.006 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 017382 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (372)
+++|.+..+....+-.-+.+-+++.++|..+..+=|...+.+-...++..++.+++++..
T Consensus 83 l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 577877777888888888899999999987665555555555677899999999998753
No 83
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=32.13 E-value=81 Score=28.75 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCC--HhHHHHHHHHHhhCceeeeC
Q 017382 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPL 98 (372)
Q Consensus 32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~--~~~~~~~~A~~~~G~~~v~l 98 (372)
+..+..++|..+.+.+ +++++|+.|.|..+-. .-.-++.-++..+|+.++.+
T Consensus 7 ~~~~l~k~A~~lV~~~---------------~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 60 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVG---------------MNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRV 60 (418)
T ss_dssp HHHHHHHHHHHHHHTT---------------TCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 4567788888888865 4999999999999865 33344555677889987764
No 84
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=30.60 E-value=1.4e+02 Score=25.70 Aligned_cols=56 Identities=9% Similarity=-0.077 Sum_probs=37.2
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|++..-.+.--.++...+...|+.++.+. +.++ ...+++.+++.++..
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQCINY 203 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEEEET
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEEEeC
Confidence 5899999999997555444444444456788766553 3444 456677888877654
No 85
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=29.94 E-value=1.9e+02 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=37.0
Q ss_pred cCCCCCEEEEEcCCCHh------HHHHHHHHH-hhCceeeeCCCCC------------CHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSFE------FVAGVLGTW-FSGCIAVPLALSY------------PESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~------~~~~~~A~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 123 (372)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-+.-. ..+++...+.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999998752 222222222 3577666443211 144566666677888888864
No 86
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=28.03 E-value=2.1e+02 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=36.8
Q ss_pred cCCCCCEEEEEcCCCHhHHHHHHHHHhhCc-eeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
++++|++|+|......=..++.+| ...|+ .++.+..+ ++. ...+++.+++.+|..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPS--EVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSC--HHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCC--HHH-HHHHHHcCCCEEEcC
Confidence 789999999998744444444444 46788 66666533 343 345677888888754
No 87
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=28.02 E-value=2.8e+02 Score=23.79 Aligned_cols=58 Identities=10% Similarity=0.009 Sum_probs=39.9
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|++....+.--..+...+...|+.++.+.. +++.+....++.+++.++..
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 58999999999998665444444555577887666543 45666655578888777653
No 88
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=27.89 E-value=1.3e+02 Score=26.66 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=36.6
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCC-----CCHHHHHHHHhhCC--ceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-----YPESELLHVMHDSD--ISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~~ 122 (372)
+++++||.|.+..+...- ..-++...|+.++.++.+ ...+.+...+.+.+ .++|+..
T Consensus 73 l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 73 KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 368899998877665443 334566788877665432 36778887774334 6666643
No 89
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=27.33 E-value=2.5e+02 Score=24.19 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=43.8
Q ss_pred CEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHH---HhhCCceEEEeccchHH-HHHHHHhhcCCccc
Q 017382 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHV---MHDSDISMVLSTEDYRE-VLQNVASKSGAKFS 141 (372)
Q Consensus 69 d~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~---l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~ 141 (372)
.+..+...+...+++-.+++-..|..-+--...-++.++..+ +++.++++||+.+.... .++.+....+.++.
T Consensus 190 ~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 190 KKEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTE 266 (312)
T ss_dssp CCEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEE
T ss_pred CCEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEE
Confidence 445667788888888888777655432211233456665555 55678999999875543 34444444554443
No 90
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.08 E-value=1.5e+02 Score=25.89 Aligned_cols=55 Identities=11% Similarity=-0.070 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCC-------CCHHHHHHHHhhCCceEEEec
Q 017382 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 122 (372)
+++||.|.+..+.-.. ...++...|+.++.++.. ...+.+...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 5688988876655443 334556778877777653 678889998886677777643
No 91
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=26.74 E-value=2.4e+02 Score=24.62 Aligned_cols=55 Identities=9% Similarity=-0.049 Sum_probs=36.8
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEe
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (372)
.++++|++|+|.. .+.--.++...+...|+.++.+.. +++.+. .+++.+++.++.
T Consensus 185 ~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~ 239 (363)
T 3uog_A 185 GHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS--SREKLD-RAFALGADHGIN 239 (363)
T ss_dssp TCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES--CHHHHH-HHHHHTCSEEEE
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec--CchhHH-HHHHcCCCEEEc
Confidence 5899999999999 554444444444567887666543 344444 467788888776
No 92
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=26.18 E-value=2e+02 Score=25.35 Aligned_cols=57 Identities=9% Similarity=0.073 Sum_probs=37.6
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCc-eeeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (372)
.++++|++|+|... +.--.++...+...|+ .++.++.+- +.+ .++++.+++.++...
T Consensus 189 ~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~--~~~-~~a~~lGa~~vi~~~ 246 (378)
T 3uko_A 189 AKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDS--KKY-ETAKKFGVNEFVNPK 246 (378)
T ss_dssp TCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCT--THH-HHHHTTTCCEEECGG
T ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH--HHH-HHHHHcCCcEEEccc
Confidence 58999999999987 5444444444456788 566665442 333 356788998877643
No 93
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=25.76 E-value=1.8e+02 Score=25.28 Aligned_cols=56 Identities=4% Similarity=-0.007 Sum_probs=37.2
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCc-eeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|+|......=..++.+ +...|+ .++.++.+ ++. ..++++.+++.++..
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAG-ANHLGAGRIFAVGSR--KHC-CDIALEYGATDIINY 218 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHH-HHTTTCSSEEEECCC--HHH-HHHHHHHTCCEEECG
T ss_pred cCCCCCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCC--HHH-HHHHHHhCCceEEcC
Confidence 589999999999864344444444 456787 56666543 333 346677888887754
No 94
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.58 E-value=1.5e+02 Score=25.70 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCC----CCHHHHHHHHhhCCceEEEec
Q 017382 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 66 ~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 122 (372)
++||.|++..+...-+....-++...|+.++.++.. ...+++...++. +.++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 578988876665444444444445668777666542 356777777654 56666643
No 95
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=25.33 E-value=1.8e+02 Score=25.70 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=39.4
Q ss_pred EEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccch
Q 017382 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125 (372)
Q Consensus 70 ~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 125 (372)
...+....+-.-..+-+++.+.|..++.+-|...+.+....++..++.+++++..+
T Consensus 94 ~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~ 149 (364)
T 4h27_A 94 AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELL 149 (364)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSST
T ss_pred CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 34445555666777778888899866655454455566778899999999998643
No 96
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=25.31 E-value=3.2e+02 Score=23.37 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=38.6
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|++..-.+.--.++...+...|+.++.+.. +++.+. .+++.+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 47899999999996554444444445567887766654 345544 5677888877754
No 97
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=24.86 E-value=2.1e+02 Score=26.05 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=44.0
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 017382 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (372)
+++|....+....+-.-..+-+++.+.|..++.+-|...+.+-...++..++.+++++.
T Consensus 171 l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 171 ISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 46675666666668888888888999998766554544445566788999999999974
No 98
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=24.84 E-value=1.2e+02 Score=23.77 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=19.2
Q ss_pred ceeeHHHHHHHHHHHHHHHhh
Q 017382 25 KSYSYDQLASSALRISSLLCS 45 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~ 45 (372)
.-+|.+|+.+++.++|..+.+
T Consensus 12 vlis~~~I~~~i~rlA~eI~e 32 (181)
T 3acd_A 12 VQISAEAIKKRVEELGGEIAR 32 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHH
Confidence 358999999999999999987
No 99
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.14 E-value=2.3e+02 Score=24.47 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=39.2
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (372)
.++++|++|++......=..++.+|- ..|+.++.+.. +++.+. .+++.+++.++...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAVNAR 218 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEEETT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEEeCC
Confidence 48999999999987555555555554 56887666644 344443 56788888887543
No 100
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=24.05 E-value=1.3e+02 Score=25.78 Aligned_cols=77 Identities=6% Similarity=-0.081 Sum_probs=47.0
Q ss_pred ceeeHHHHHHHHHHHHHHHhhCCCCcccccccccccccccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCH
Q 017382 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE 104 (372)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~ 104 (372)
..+++.+........+..+... . ..++++|++|++... +.--.++...+...|+.++.+. + +
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al-~-------------~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~--~ 175 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAF-E-------------KIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-A--S 175 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHH-T-------------TSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-S--S
T ss_pred CCCCHHHHhhCccHHHHHHHHH-h-------------hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-C--h
Confidence 3578888654433333333221 0 158999999999999 6444444444456788777666 2 2
Q ss_pred HHHHHHHhhCCceEEE
Q 017382 105 SELLHVMHDSDISMVL 120 (372)
Q Consensus 105 ~~l~~~l~~~~~~~vi 120 (372)
+.+ ..+++.+++.++
T Consensus 176 ~~~-~~~~~lGa~~v~ 190 (315)
T 3goh_A 176 LSQ-ALAAKRGVRHLY 190 (315)
T ss_dssp CCH-HHHHHHTEEEEE
T ss_pred hhH-HHHHHcCCCEEE
Confidence 222 334667888888
No 101
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.37 E-value=2e+02 Score=24.27 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=43.0
Q ss_pred EEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHH---HHHHhhCCceEEEeccchH-HHHHHHHhhcCCc
Q 017382 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL---LHVMHDSDISMVLSTEDYR-EVLQNVASKSGAK 139 (372)
Q Consensus 70 ~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l---~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~ 139 (372)
+..+...+...+++-.+++-..|..-+--...-++.++ ...+++.++++||+.+... +.++.+....+.+
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~ 248 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVR 248 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCE
T ss_pred CeEEEECccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe
Confidence 44566677899999999988766543222233355555 4556779999999987543 3333333333333
No 102
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.07 E-value=1.8e+02 Score=30.82 Aligned_cols=90 Identities=16% Similarity=0.037 Sum_probs=60.7
Q ss_pred CCCCCcEEEEecCCCCCCCceeeeehhhHHHHHHHHHhhc---ccCCCCeEEEecCchhHHHHHHHHHHHHHcCceEEEc
Q 017382 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (372)
Q Consensus 167 ~~~~~~a~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~ 243 (372)
..|+.+|++. . .-.+|+..+...+..+...+ ++++++++..+++-+...- ..+++.+..|+..+.+
T Consensus 476 ~~p~~~Av~~--~-------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v--v~~lailkaG~~~vpl 544 (1304)
T 2vsq_A 476 ANPDAPALTY--S-------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV--IGILGVLKAGAAYLPV 544 (1304)
T ss_dssp HCTTSEEEES--S-------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH--HHHHHHHHTTCEEEEC
T ss_pred hCCCCeEEEE--C-------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH--HHHHHHHHHCCEEEEE
Confidence 3466777652 1 13689999887777766544 6889999999988765543 3588999999999988
Q ss_pred CCCc-hhHHHHHHHhhCCCCCCCCCcceeEeecch
Q 017382 244 PKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (372)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 277 (372)
+... .+.+-.. ++..++.+++..+
T Consensus 545 dp~~p~~rl~~i----------l~~~~~~~vl~~~ 569 (1304)
T 2vsq_A 545 DPKLPEDRISYM----------LADSAAACLLTHQ 569 (1304)
T ss_dssp CTTSCHHHHHHH----------HHHHTCCEEEECS
T ss_pred CCCCHHHHHHHH----------HHHcCCCEEEECc
Confidence 7644 4444444 4445555555543
No 103
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=23.02 E-value=1.7e+02 Score=25.26 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=35.8
Q ss_pred ccCCCCCEEEEEcCCC-HhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~-~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
+++++|++|++....+ .=..++.+| ...|+.++.+..+- +.+ ..+++.+++.++..
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~--~~~-~~~~~lga~~~~~~ 196 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNN--KHT-EELLRLGAAYVIDT 196 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSS--TTH-HHHHHHTCSEEEET
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCH--HHH-HHHHhCCCcEEEeC
Confidence 5899999999998885 444444444 46788776665432 222 23345677777643
No 104
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=23.00 E-value=2.2e+02 Score=24.72 Aligned_cols=57 Identities=9% Similarity=-0.172 Sum_probs=37.2
Q ss_pred ccCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEec
Q 017382 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122 (372)
Q Consensus 63 ~gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (372)
.++++|++|+|....+.--.++...+...|+.++.+.. +++.+. .+++.+++.++..
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~~~ 219 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG--STGKCE-ACERLGAKRGINY 219 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHHTCSEEEET
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHHH-HHHhcCCCEEEeC
Confidence 58999999999966665444444555577887666643 344443 4556777777643
No 105
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.74 E-value=1.7e+02 Score=21.86 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEE
Q 017382 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119 (372)
Q Consensus 68 gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 119 (372)
-|.|.++.| ......+...+..+|...+.+.+....+++....++.+.+++
T Consensus 71 ~Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 71 VDMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CSEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 366666666 344444444566677655666665556666666666665544
No 106
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=22.49 E-value=1.4e+02 Score=23.30 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=19.9
Q ss_pred CceeeHHHHHHHHHHHHHHHhh
Q 017382 24 QKSYSYDQLASSALRISSLLCS 45 (372)
Q Consensus 24 ~~~~Ty~el~~~~~~la~~L~~ 45 (372)
..-+||.++.+++.++|..+.+
T Consensus 11 ~~li~~~~i~~~i~~La~~I~~ 32 (181)
T 2ywu_A 11 PVQISAEAIKKRVEELGGEIAR 32 (181)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHH
T ss_pred cEEECHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999987
No 107
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.95 E-value=2.8e+02 Score=23.70 Aligned_cols=58 Identities=7% Similarity=0.013 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccchH
Q 017382 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126 (372)
Q Consensus 68 gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (372)
++.|. ....+-.-..+-+++.+.|..++.+-|...+......++..++.+++++..+.
T Consensus 54 ~~~vv-~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~ 111 (318)
T 2rkb_A 54 CRHLV-CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWD 111 (318)
T ss_dssp CCEEE-ECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHH
T ss_pred CCEEE-EECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHH
Confidence 34444 44446666677777889998666554443444566788999999999886543
No 108
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=21.38 E-value=2.5e+02 Score=24.22 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=38.4
Q ss_pred cCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (372)
++++|++|++......=..++.+|-..-|+.++.++.+ ++. ...+++.+++.++...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~-~~~~~~lGa~~~i~~~ 224 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDR-LALAREVGADAAVKSG 224 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHH-HHHHHHTTCSEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHH-HHHHHHcCCCEEEcCC
Confidence 78999999999874455566666555436666665433 444 4456788998888654
No 109
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.09 E-value=1.9e+02 Score=25.24 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=36.7
Q ss_pred cCCCC-CEEEEEcCCC-HhHHHHHHHHHhhCceeeeCCCCCCH-HHHHHHHhhCCceEEEec
Q 017382 64 AGGCG-ARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYPE-SELLHVMHDSDISMVLST 122 (372)
Q Consensus 64 gv~~g-d~V~l~~~n~-~~~~~~~~A~~~~G~~~v~l~~~~~~-~~l~~~l~~~~~~~vi~~ 122 (372)
++++| ++|+|....+ .=..++.+| ...|+.++.+..+... ++....+++.+++.++..
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 223 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHH-HHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHH-HHCCCEEEEEecCccccHHHHHHHHhcCCeEEEec
Confidence 78999 9999999855 444444444 4578865555322222 233445577888887754
No 110
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=21.01 E-value=97 Score=19.73 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHHHHhCCcCCCceEEEeCCceeeHHHHHHHHHHH
Q 017382 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRI 39 (372)
Q Consensus 3 ~~~~l~~~a~~~~~~~al~~~~~~~Ty~el~~~~~~l 39 (372)
+-..+....+.+|+.+.++..++..+|+.+.+-...+
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l 68 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLL 68 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555556678888888888888888877655544
No 111
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=20.76 E-value=1.9e+02 Score=25.27 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=37.5
Q ss_pred cCCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 017382 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (372)
Q Consensus 64 gv~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (372)
++++|++|+|......=..++.+|-...|+.++.+.. +++.+ ..+++.+++.++...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 7889999999998445555555554332876665543 34443 345688998887643
No 112
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=20.54 E-value=3e+02 Score=23.56 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 017382 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (372)
+++|....+....+-.-..+-+++.+.|..++.+-|...+..-...++..++.+++++..
T Consensus 63 ~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 456654444566677777777888899986665444333444566889999999998853
No 113
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.35 E-value=2.5e+02 Score=25.37 Aligned_cols=55 Identities=5% Similarity=-0.074 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcCCCHhHHHHHH-HHHhhCceeeeCCCCCCHHHHHHHHhhCCceEEEe
Q 017382 65 GGCGARIGIVAKPSFEFVAGVL-GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (372)
Q Consensus 65 v~~gd~V~l~~~n~~~~~~~~~-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (372)
+++||.|++.-+.-......+- .+...|+.++.++.. ..+.+...++. +.++|+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~ 173 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFL 173 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEE
Confidence 5666666544433322222221 344556666665554 45555555543 4455553
No 114
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=20.18 E-value=5.1e+02 Score=23.81 Aligned_cols=45 Identities=9% Similarity=0.000 Sum_probs=29.2
Q ss_pred eEEEecCchhHHHHH-HHHHHHHHcCceEEEcCCC----chhHHHHHHHh
Q 017382 213 QFLHCLPLHHVHGLF-NALLAPLYAGATVEFMPKF----SVRGIWQRWRE 257 (372)
Q Consensus 213 ~~l~~~pl~~~~~~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~ 257 (372)
+++...|+.+...+. ..+..+|.+|.++++-|.. ....+.+.+.+
T Consensus 144 VV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~ 193 (486)
T 1t90_A 144 VVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEK 193 (486)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHH
Confidence 677778877653332 2466789999999998753 23445555444
Done!