Query 017383
Match_columns 372
No_of_seqs 443 out of 2847
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4648 Uncharacterized conser 100.0 6.6E-32 1.4E-36 245.4 21.1 198 1-204 10-218 (536)
2 KOG4626 O-linked N-acetylgluco 99.8 2.4E-19 5.2E-24 174.1 11.9 184 12-206 190-385 (966)
3 KOG0553 TPR repeat-containing 99.8 7.8E-19 1.7E-23 158.7 13.7 119 82-200 79-198 (304)
4 KOG4626 O-linked N-acetylgluco 99.8 9.8E-18 2.1E-22 163.0 18.5 133 53-187 290-424 (966)
5 PRK15359 type III secretion sy 99.7 6.1E-17 1.3E-21 136.2 16.0 129 67-200 12-141 (144)
6 KOG0550 Molecular chaperone (D 99.7 1.1E-16 2.5E-21 149.5 13.0 173 53-226 208-406 (486)
7 PF13877 RPAP3_C: Potential Mo 99.7 3E-17 6.5E-22 127.7 6.1 61 312-372 1-61 (94)
8 KOG0548 Molecular co-chaperone 99.7 1.3E-16 2.9E-21 153.5 11.5 159 40-198 287-473 (539)
9 KOG1126 DNA-binding cell divis 99.6 5.2E-16 1.1E-20 152.7 10.5 153 53-207 425-589 (638)
10 TIGR00990 3a0801s09 mitochondr 99.6 2.7E-15 5.8E-20 155.3 16.2 145 60-206 343-498 (615)
11 TIGR00990 3a0801s09 mitochondr 99.6 2.8E-15 6.1E-20 155.1 16.3 146 61-206 307-464 (615)
12 TIGR02552 LcrH_SycD type III s 99.6 2.3E-14 4.9E-19 118.7 16.1 126 69-196 4-130 (135)
13 PRK10370 formate-dependent nit 99.6 2.4E-14 5.3E-19 126.8 15.8 128 60-189 51-182 (198)
14 KOG0543 FKBP-type peptidyl-pro 99.6 3E-14 6.4E-19 134.1 15.0 121 83-203 207-343 (397)
15 KOG1155 Anaphase-promoting com 99.6 5.4E-14 1.2E-18 133.4 14.7 145 54-200 335-481 (559)
16 PLN03088 SGT1, suppressor of 99.6 7.7E-14 1.7E-18 134.6 16.1 114 87-200 5-119 (356)
17 KOG4234 TPR repeat-containing 99.6 4.9E-14 1.1E-18 120.5 12.6 108 83-190 94-207 (271)
18 PRK11189 lipoprotein NlpI; Pro 99.6 1.3E-13 2.8E-18 129.9 16.7 127 60-186 38-167 (296)
19 KOG1126 DNA-binding cell divis 99.6 6.3E-14 1.4E-18 138.2 14.4 176 14-200 429-606 (638)
20 PRK11189 lipoprotein NlpI; Pro 99.5 1.3E-13 2.8E-18 129.9 16.0 121 56-179 71-193 (296)
21 PRK09782 bacteriophage N4 rece 99.5 2E-13 4.2E-18 146.1 17.9 125 61-188 589-714 (987)
22 PRK15363 pathogenicity island 99.5 4.4E-13 9.5E-18 112.1 15.4 116 83-198 34-150 (157)
23 PRK12370 invasion protein regu 99.5 2.2E-13 4.9E-18 139.1 16.6 126 60-187 273-408 (553)
24 COG3063 PilF Tfp pilus assembl 99.5 1.5E-13 3.2E-18 120.2 12.7 131 56-188 42-176 (250)
25 PRK15359 type III secretion sy 99.5 1.3E-13 2.9E-18 115.8 12.1 105 59-165 35-140 (144)
26 KOG0624 dsRNA-activated protei 99.5 1.4E-13 3.1E-18 126.3 12.7 217 8-224 173-425 (504)
27 PRK12370 invasion protein regu 99.5 2.7E-13 5.8E-18 138.5 15.8 134 60-195 316-451 (553)
28 TIGR02521 type_IV_pilW type IV 99.5 1.1E-12 2.4E-17 116.8 16.5 128 60-189 77-207 (234)
29 PRK09782 bacteriophage N4 rece 99.5 9E-13 1.9E-17 141.1 17.3 147 60-208 554-710 (987)
30 TIGR02521 type_IV_pilW type IV 99.5 2.6E-12 5.6E-17 114.4 17.1 133 60-194 43-178 (234)
31 PRK15174 Vi polysaccharide exp 99.5 2E-12 4.2E-17 134.6 17.2 146 60-207 224-384 (656)
32 PRK15174 Vi polysaccharide exp 99.5 1.5E-12 3.3E-17 135.3 16.3 140 60-203 258-402 (656)
33 KOG0553 TPR repeat-containing 99.4 5.4E-13 1.2E-17 121.0 11.0 120 59-180 92-215 (304)
34 KOG1155 Anaphase-promoting com 99.4 3.7E-12 8.1E-17 121.0 15.2 126 53-180 368-495 (559)
35 PLN02789 farnesyltranstransfer 99.4 8.5E-12 1.8E-16 118.2 16.2 135 60-196 49-187 (320)
36 KOG0548 Molecular co-chaperone 99.4 2.5E-12 5.3E-17 124.3 11.7 109 87-195 5-114 (539)
37 PRK11447 cellulose synthase su 99.4 6.2E-12 1.3E-16 138.8 16.5 96 60-155 315-423 (1157)
38 COG3063 PilF Tfp pilus assembl 99.4 1E-11 2.3E-16 108.7 14.2 136 60-198 81-220 (250)
39 KOG0547 Translocase of outer m 99.4 8.7E-12 1.9E-16 119.2 14.3 145 60-206 338-493 (606)
40 KOG0547 Translocase of outer m 99.4 1.3E-11 2.7E-16 118.2 14.7 148 60-209 372-537 (606)
41 PRK02603 photosystem I assembl 99.4 2.2E-11 4.7E-16 105.5 15.2 115 70-184 21-153 (172)
42 PRK15179 Vi polysaccharide bio 99.4 2.2E-11 4.8E-16 126.0 17.8 139 60-200 98-241 (694)
43 KOG0551 Hsp90 co-chaperone CNS 99.4 2.7E-11 5.8E-16 111.1 15.7 107 82-188 79-190 (390)
44 CHL00033 ycf3 photosystem I as 99.4 2.8E-11 6.1E-16 104.4 15.1 128 58-185 9-154 (168)
45 KOG1125 TPR repeat-containing 99.3 4.2E-12 9.1E-17 123.7 10.6 121 63-183 409-530 (579)
46 PRK11788 tetratricopeptide rep 99.3 2.3E-11 5E-16 118.5 15.4 122 60-183 119-246 (389)
47 KOG1173 Anaphase-promoting com 99.3 6.2E-12 1.3E-16 122.1 11.0 135 60-196 392-534 (611)
48 PRK11447 cellulose synthase su 99.3 2.5E-11 5.4E-16 134.1 17.1 133 60-194 281-428 (1157)
49 TIGR03302 OM_YfiO outer membra 99.3 2.7E-11 5.8E-16 110.0 14.5 139 59-197 44-215 (235)
50 PLN02789 farnesyltranstransfer 99.3 3.2E-11 6.8E-16 114.3 15.0 171 16-196 47-228 (320)
51 TIGR02917 PEP_TPR_lipo putativ 99.3 3.8E-11 8.2E-16 127.7 16.2 124 60-187 715-839 (899)
52 PF13429 TPR_15: Tetratricopep 99.3 1.6E-11 3.5E-16 114.7 11.6 140 60-199 122-262 (280)
53 TIGR02795 tol_pal_ybgF tol-pal 99.3 7.2E-11 1.6E-15 94.8 13.8 103 86-188 4-113 (119)
54 cd00189 TPR Tetratricopeptide 99.3 8.4E-11 1.8E-15 88.4 12.5 97 87-183 3-100 (100)
55 PLN03088 SGT1, suppressor of 99.3 3.1E-11 6.7E-16 116.6 12.3 105 59-165 13-118 (356)
56 TIGR02917 PEP_TPR_lipo putativ 99.3 7.2E-11 1.6E-15 125.6 16.0 185 11-206 640-834 (899)
57 PF13414 TPR_11: TPR repeat; P 99.3 1.7E-11 3.8E-16 89.2 7.8 65 118-182 4-69 (69)
58 PF13414 TPR_11: TPR repeat; P 99.3 2.4E-11 5.3E-16 88.5 8.4 66 83-148 2-69 (69)
59 PRK11788 tetratricopeptide rep 99.3 1.4E-10 3.1E-15 113.0 16.4 147 60-206 81-245 (389)
60 PRK15179 Vi polysaccharide bio 99.3 1.6E-10 3.5E-15 119.6 16.8 134 71-206 75-219 (694)
61 PRK10049 pgaA outer membrane p 99.2 2.3E-10 5E-15 121.3 17.4 132 60-194 27-159 (765)
62 TIGR03302 OM_YfiO outer membra 99.2 1.5E-10 3.3E-15 105.0 13.9 159 18-182 45-234 (235)
63 KOG1173 Anaphase-promoting com 99.2 1.2E-10 2.6E-15 113.3 13.4 156 53-210 316-524 (611)
64 KOG0624 dsRNA-activated protei 99.2 1.6E-10 3.4E-15 106.5 13.2 115 82-196 36-154 (504)
65 KOG1125 TPR repeat-containing 99.2 1.7E-10 3.7E-15 112.6 13.4 145 60-206 297-495 (579)
66 PRK10370 formate-dependent nit 99.2 2.4E-10 5.1E-15 101.3 13.3 111 96-206 51-175 (198)
67 COG5010 TadD Flp pilus assembl 99.2 4.8E-10 1E-14 100.2 14.8 138 59-198 77-215 (257)
68 KOG1129 TPR repeat-containing 99.2 1.2E-10 2.6E-15 106.6 11.2 133 54-188 329-466 (478)
69 PRK15363 pathogenicity island 99.2 1.8E-10 3.8E-15 96.5 11.0 89 59-149 46-135 (157)
70 KOG2076 RNA polymerase III tra 99.2 4.9E-10 1.1E-14 114.1 16.3 122 59-182 150-272 (895)
71 KOG0550 Molecular chaperone (D 99.2 1.4E-10 3E-15 109.1 11.2 133 60-194 181-330 (486)
72 PRK10049 pgaA outer membrane p 99.2 6.7E-10 1.4E-14 117.8 17.8 153 60-212 284-464 (765)
73 KOG1128 Uncharacterized conser 99.2 4.7E-10 1E-14 112.1 13.6 186 11-203 416-615 (777)
74 KOG4642 Chaperone-dependent E3 99.1 2E-10 4.3E-15 101.0 9.0 99 83-181 9-108 (284)
75 KOG0376 Serine-threonine phosp 99.1 1.3E-10 2.8E-15 111.7 7.8 117 84-200 4-121 (476)
76 COG4235 Cytochrome c biogenesi 99.1 2.5E-09 5.5E-14 97.8 15.7 132 61-194 135-270 (287)
77 PF12895 Apc3: Anaphase-promot 99.1 1.8E-10 3.9E-15 87.4 7.0 80 97-177 2-84 (84)
78 COG4783 Putative Zn-dependent 99.1 2E-09 4.4E-14 103.6 15.4 138 59-198 317-455 (484)
79 PF13432 TPR_16: Tetratricopep 99.1 3.8E-10 8.2E-15 81.1 7.8 64 122-185 2-65 (65)
80 KOG1129 TPR repeat-containing 99.1 1.5E-10 3.2E-15 106.0 6.6 134 60-195 302-439 (478)
81 TIGR02552 LcrH_SycD type III s 99.1 1.4E-09 3.1E-14 89.7 11.5 93 60-154 29-122 (135)
82 PF13429 TPR_15: Tetratricopep 99.1 1.7E-10 3.7E-15 107.7 6.6 119 60-180 158-277 (280)
83 KOG2002 TPR-containing nuclear 99.1 2E-09 4.3E-14 110.6 14.6 137 60-196 211-387 (1018)
84 KOG2002 TPR-containing nuclear 99.1 6.6E-10 1.4E-14 113.9 11.0 139 61-201 625-766 (1018)
85 PF13432 TPR_16: Tetratricopep 99.1 1.2E-09 2.5E-14 78.5 8.8 64 88-151 1-65 (65)
86 PRK15331 chaperone protein Sic 99.0 4.5E-09 9.8E-14 88.5 13.2 105 83-188 36-141 (165)
87 PF09976 TPR_21: Tetratricopep 99.0 4.3E-09 9.4E-14 88.4 13.3 118 60-178 23-145 (145)
88 PRK10803 tol-pal system protei 99.0 5.3E-09 1.1E-13 96.4 15.0 106 83-188 141-254 (263)
89 PF12895 Apc3: Anaphase-promot 99.0 4.3E-10 9.4E-15 85.3 6.3 82 61-143 2-84 (84)
90 KOG4162 Predicted calmodulin-b 99.0 2.9E-09 6.3E-14 107.0 13.4 125 60-186 662-789 (799)
91 COG5010 TadD Flp pilus assembl 99.0 3.4E-09 7.4E-14 94.8 12.5 116 59-176 111-227 (257)
92 PRK10153 DNA-binding transcrip 99.0 3.5E-09 7.6E-14 106.6 14.2 125 60-187 354-489 (517)
93 PRK14574 hmsH outer membrane p 99.0 7.5E-09 1.6E-13 109.2 16.6 149 59-209 45-203 (822)
94 KOG0545 Aryl-hydrocarbon recep 99.0 5.4E-09 1.2E-13 92.4 12.9 102 86-187 180-300 (329)
95 KOG4648 Uncharacterized conser 99.0 2.6E-09 5.6E-14 98.6 10.9 148 3-152 19-200 (536)
96 KOG3060 Uncharacterized conser 99.0 2.1E-08 4.6E-13 89.2 15.2 135 60-196 64-199 (289)
97 KOG0543 FKBP-type peptidyl-pro 99.0 6.4E-09 1.4E-13 98.4 11.9 111 59-169 219-343 (397)
98 KOG3060 Uncharacterized conser 99.0 2.9E-08 6.3E-13 88.4 15.3 127 60-188 98-228 (289)
99 PRK14574 hmsH outer membrane p 99.0 1.4E-08 3.1E-13 107.2 15.8 135 60-197 80-215 (822)
100 cd05804 StaR_like StaR_like; a 98.9 1E-08 2.2E-13 98.7 13.2 123 59-184 54-181 (355)
101 PRK11906 transcriptional regul 98.9 1.9E-08 4.1E-13 97.4 14.5 123 61-185 271-406 (458)
102 PF12688 TPR_5: Tetratrico pep 98.9 3.4E-08 7.4E-13 79.9 13.3 94 86-179 3-103 (120)
103 KOG2003 TPR repeat-containing 98.9 3.2E-08 6.9E-13 94.3 15.1 130 58-189 500-630 (840)
104 PF13525 YfiO: Outer membrane 98.9 4.6E-08 1E-12 87.0 15.4 136 59-194 16-184 (203)
105 KOG1840 Kinesin light chain [C 98.9 1.2E-08 2.5E-13 101.6 12.5 120 60-181 211-355 (508)
106 PRK02603 photosystem I assembl 98.9 1.5E-08 3.3E-13 87.7 11.8 104 60-166 47-166 (172)
107 KOG4555 TPR repeat-containing 98.9 2.2E-08 4.7E-13 80.4 11.5 98 87-184 46-148 (175)
108 KOG4234 TPR repeat-containing 98.9 1.4E-08 2.9E-13 87.4 10.9 95 58-152 105-203 (271)
109 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.4E-08 3.1E-13 81.3 10.7 95 60-154 14-113 (119)
110 PRK10866 outer membrane biogen 98.9 8.8E-08 1.9E-12 87.5 16.4 138 59-196 43-220 (243)
111 PF13512 TPR_18: Tetratricopep 98.9 6.1E-08 1.3E-12 79.9 13.2 104 84-187 10-135 (142)
112 COG1729 Uncharacterized protei 98.9 4.3E-08 9.4E-13 88.7 13.1 102 87-188 144-252 (262)
113 KOG2076 RNA polymerase III tra 98.9 6.5E-08 1.4E-12 99.0 15.6 124 83-206 138-272 (895)
114 KOG2003 TPR repeat-containing 98.8 1.4E-08 3E-13 96.7 9.9 131 62-194 470-601 (840)
115 PF13371 TPR_9: Tetratricopept 98.8 2.4E-08 5.3E-13 73.2 8.1 63 125-187 3-65 (73)
116 COG2956 Predicted N-acetylgluc 98.8 5.3E-08 1.2E-12 89.4 11.9 143 55-199 113-263 (389)
117 cd05804 StaR_like StaR_like; a 98.8 1.8E-07 3.8E-12 90.1 16.2 120 62-183 94-218 (355)
118 KOG1128 Uncharacterized conser 98.8 6E-08 1.3E-12 97.3 12.8 123 59-183 496-619 (777)
119 PF13371 TPR_9: Tetratricopept 98.8 3.2E-08 6.9E-13 72.6 8.2 70 90-159 1-71 (73)
120 KOG1156 N-terminal acetyltrans 98.8 3.9E-07 8.4E-12 90.5 18.1 162 10-181 6-173 (700)
121 KOG1840 Kinesin light chain [C 98.8 3E-08 6.5E-13 98.7 10.6 127 55-181 247-397 (508)
122 KOG1127 TPR repeat-containing 98.8 4.1E-08 8.9E-13 101.1 11.5 132 54-187 497-632 (1238)
123 cd00189 TPR Tetratricopeptide 98.8 6.7E-08 1.5E-12 72.3 9.8 88 60-149 12-100 (100)
124 PRK10866 outer membrane biogen 98.8 3.1E-07 6.6E-12 84.0 15.8 115 83-197 31-173 (243)
125 KOG1174 Anaphase-promoting com 98.8 2.1E-07 4.6E-12 88.0 14.6 148 59-208 311-504 (564)
126 PF14559 TPR_19: Tetratricopep 98.8 3.5E-08 7.5E-13 71.3 7.5 64 128-191 2-65 (68)
127 PF13525 YfiO: Outer membrane 98.8 2.7E-07 6E-12 82.1 14.8 116 83-198 4-140 (203)
128 PRK10803 tol-pal system protei 98.8 9.8E-08 2.1E-12 88.1 12.1 94 60-153 155-253 (263)
129 PF06552 TOM20_plant: Plant sp 98.7 9.6E-08 2.1E-12 81.3 10.7 94 100-193 7-122 (186)
130 PRK14720 transcript cleavage f 98.7 1.4E-07 3.1E-12 99.1 13.8 121 57-182 39-180 (906)
131 PF14559 TPR_19: Tetratricopep 98.7 4.3E-08 9.3E-13 70.8 7.1 66 94-159 1-67 (68)
132 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.4E-08 1.2E-12 94.2 9.6 69 77-147 70-142 (453)
133 KOG1174 Anaphase-promoting com 98.7 1.9E-07 4.2E-12 88.3 13.0 149 59-207 243-436 (564)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.8E-07 3.8E-12 90.6 13.0 68 113-180 70-141 (453)
135 KOG1156 N-terminal acetyltrans 98.7 1.2E-07 2.5E-12 94.1 11.6 136 58-195 17-153 (700)
136 CHL00033 ycf3 photosystem I as 98.7 2.9E-07 6.2E-12 79.2 12.9 107 93-199 8-120 (168)
137 COG2956 Predicted N-acetylgluc 98.7 1.2E-06 2.5E-11 80.8 16.7 126 60-185 153-283 (389)
138 COG4783 Putative Zn-dependent 98.7 4.9E-07 1.1E-11 87.4 14.9 117 85-201 307-424 (484)
139 KOG1130 Predicted G-alpha GTPa 98.7 4.6E-08 9.9E-13 92.4 7.2 128 53-180 99-264 (639)
140 PRK10153 DNA-binding transcrip 98.7 6.8E-07 1.5E-11 90.2 15.9 132 77-209 332-487 (517)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.9E-07 8.5E-12 88.4 13.7 114 60-178 181-295 (395)
142 PRK11906 transcriptional regul 98.6 7.8E-07 1.7E-11 86.3 15.1 130 77-206 243-403 (458)
143 PRK15331 chaperone protein Sic 98.6 2.3E-07 5E-12 78.2 9.8 91 59-152 48-139 (165)
144 PF13424 TPR_12: Tetratricopep 98.6 5.4E-08 1.2E-12 72.4 5.2 61 85-145 6-74 (78)
145 TIGR00540 hemY_coli hemY prote 98.6 1.4E-06 3.1E-11 85.9 16.3 126 59-186 95-222 (409)
146 TIGR00540 hemY_coli hemY prote 98.6 5.2E-07 1.1E-11 89.0 13.2 133 61-194 238-379 (409)
147 COG4785 NlpI Lipoprotein NlpI, 98.6 1.4E-07 3E-12 82.3 7.8 104 83-186 64-168 (297)
148 PF13424 TPR_12: Tetratricopep 98.6 1.6E-07 3.4E-12 69.9 7.0 64 117-180 5-75 (78)
149 PF04733 Coatomer_E: Coatomer 98.6 1.2E-06 2.6E-11 82.2 14.4 125 60-191 114-241 (290)
150 KOG1130 Predicted G-alpha GTPa 98.6 2.8E-07 6.1E-12 87.1 9.7 129 53-181 199-345 (639)
151 KOG0495 HAT repeat protein [RN 98.6 1E-06 2.2E-11 87.7 13.9 149 59-209 595-753 (913)
152 COG4785 NlpI Lipoprotein NlpI, 98.6 3.7E-07 8.1E-12 79.7 9.3 95 55-151 71-167 (297)
153 KOG1308 Hsp70-interacting prot 98.5 3.3E-08 7.1E-13 91.5 2.2 97 87-183 117-214 (377)
154 PRK14720 transcript cleavage f 98.5 2E-06 4.2E-11 90.7 14.7 124 77-204 26-178 (906)
155 PRK10747 putative protoheme IX 98.5 4.5E-06 9.8E-11 82.0 16.4 128 60-189 96-225 (398)
156 KOG4162 Predicted calmodulin-b 98.5 1.2E-06 2.7E-11 88.5 12.2 115 86-200 652-769 (799)
157 PRK10747 putative protoheme IX 98.5 5.7E-06 1.2E-10 81.3 16.8 124 59-183 129-295 (398)
158 KOG1127 TPR repeat-containing 98.4 1.5E-06 3.2E-11 90.0 11.6 133 60-192 538-671 (1238)
159 KOG0495 HAT repeat protein [RN 98.4 4.8E-06 1E-10 83.0 14.3 126 60-188 630-756 (913)
160 PF12569 NARP1: NMDA receptor- 98.4 1.3E-05 2.7E-10 80.8 16.9 71 117-187 194-264 (517)
161 KOG3785 Uncharacterized conser 98.4 6.6E-06 1.4E-10 76.7 13.6 126 60-186 34-186 (557)
162 KOG4555 TPR repeat-containing 98.4 2.6E-06 5.5E-11 68.7 9.0 90 60-151 55-149 (175)
163 COG1729 Uncharacterized protei 98.4 3.7E-06 8E-11 76.3 11.0 97 60-156 153-254 (262)
164 PF06552 TOM20_plant: Plant sp 98.4 4.5E-06 9.8E-11 71.2 10.6 87 64-152 7-115 (186)
165 PF14938 SNAP: Soluble NSF att 98.4 3.2E-06 6.9E-11 79.1 10.8 131 56-186 82-231 (282)
166 PF14938 SNAP: Soluble NSF att 98.3 2.3E-06 5E-11 80.1 9.7 126 56-182 42-186 (282)
167 PF13512 TPR_18: Tetratricopep 98.3 4.7E-06 1E-10 68.8 10.1 95 59-153 21-135 (142)
168 PF09976 TPR_21: Tetratricopep 98.3 2.7E-05 5.8E-10 65.3 14.0 90 87-176 14-110 (145)
169 PF04733 Coatomer_E: Coatomer 98.3 8.5E-06 1.8E-10 76.4 11.9 140 60-202 143-286 (290)
170 KOG2796 Uncharacterized conser 98.3 5.5E-05 1.2E-09 68.1 15.9 126 59-185 188-320 (366)
171 COG4235 Cytochrome c biogenesi 98.3 1.6E-05 3.5E-10 73.1 12.9 96 98-193 136-235 (287)
172 PF12688 TPR_5: Tetratrico pep 98.2 1.4E-05 3E-10 64.7 10.7 86 60-145 13-103 (120)
173 KOG2376 Signal recognition par 98.2 1.4E-05 3E-10 79.0 12.3 123 60-187 24-146 (652)
174 COG4700 Uncharacterized protei 98.2 7.2E-05 1.6E-09 64.1 14.9 120 63-185 71-194 (251)
175 KOG4642 Chaperone-dependent E3 98.2 7.5E-06 1.6E-10 72.6 7.9 87 59-147 21-108 (284)
176 PF12569 NARP1: NMDA receptor- 98.1 8.9E-05 1.9E-09 74.8 16.2 99 83-181 193-292 (517)
177 COG4105 ComL DNA uptake lipopr 98.1 0.00022 4.8E-09 64.4 16.6 140 60-199 46-215 (254)
178 PF00515 TPR_1: Tetratricopept 98.1 5.8E-06 1.3E-10 51.0 4.4 32 118-149 2-33 (34)
179 PF13428 TPR_14: Tetratricopep 98.1 9.1E-06 2E-10 53.4 5.1 42 118-159 2-43 (44)
180 PF13431 TPR_17: Tetratricopep 98.1 3.9E-06 8.6E-11 51.9 3.1 33 139-171 1-33 (34)
181 KOG1941 Acetylcholine receptor 98.0 1E-05 2.2E-10 75.7 6.9 127 55-181 128-276 (518)
182 KOG0376 Serine-threonine phosp 98.0 4.6E-06 1E-10 80.8 4.7 102 59-162 15-117 (476)
183 KOG2376 Signal recognition par 98.0 6.4E-05 1.4E-09 74.4 12.1 122 59-185 90-258 (652)
184 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00036 7.8E-09 60.0 15.8 121 61-183 108-234 (291)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00017 3.6E-09 70.2 14.8 109 89-199 174-282 (395)
186 PLN03081 pentatricopeptide (PP 98.0 0.00011 2.4E-09 77.5 14.7 124 60-186 403-529 (697)
187 KOG3081 Vesicle coat complex C 98.0 0.00025 5.5E-09 64.0 14.5 115 87-202 172-292 (299)
188 PF00515 TPR_1: Tetratricopept 98.0 1.2E-05 2.7E-10 49.5 4.5 34 151-184 1-34 (34)
189 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00027 5.9E-09 60.7 14.5 125 59-183 141-268 (291)
190 KOG1310 WD40 repeat protein [G 98.0 3.3E-05 7.1E-10 75.4 9.0 104 83-186 373-480 (758)
191 KOG4340 Uncharacterized conser 98.0 7.4E-05 1.6E-09 68.5 10.6 124 61-186 23-179 (459)
192 COG4105 ComL DNA uptake lipopr 98.0 0.00046 1E-08 62.3 15.6 104 83-186 33-151 (254)
193 PLN03218 maturation of RBCL 1; 97.9 0.00036 7.8E-09 76.3 16.8 119 60-180 484-608 (1060)
194 PF13428 TPR_14: Tetratricopep 97.9 2.5E-05 5.5E-10 51.3 4.9 42 152-193 2-43 (44)
195 PF07719 TPR_2: Tetratricopept 97.9 3E-05 6.4E-10 47.5 4.8 31 119-149 3-33 (34)
196 PLN03218 maturation of RBCL 1; 97.9 0.00054 1.2E-08 74.9 17.4 118 60-178 591-711 (1060)
197 PF07719 TPR_2: Tetratricopept 97.9 3.5E-05 7.6E-10 47.2 4.7 34 151-184 1-34 (34)
198 COG4700 Uncharacterized protei 97.8 0.00039 8.4E-09 59.8 12.4 117 60-178 101-220 (251)
199 PLN03077 Protein ECB2; Provisi 97.8 0.00052 1.1E-08 74.2 16.2 127 60-189 566-695 (857)
200 PF13431 TPR_17: Tetratricopep 97.8 1.9E-05 4.2E-10 48.8 2.7 32 106-137 1-33 (34)
201 KOG0545 Aryl-hydrocarbon recep 97.8 0.00018 4E-09 64.2 9.8 103 53-155 183-302 (329)
202 KOG1915 Cell cycle control pro 97.8 0.0011 2.3E-08 64.5 15.7 146 60-205 378-537 (677)
203 KOG1308 Hsp70-interacting prot 97.8 8.1E-06 1.8E-10 75.9 1.4 90 58-149 124-214 (377)
204 KOG2610 Uncharacterized conser 97.8 0.00063 1.4E-08 63.4 13.3 145 59-205 114-277 (491)
205 PRK04841 transcriptional regul 97.7 0.0003 6.4E-09 76.4 12.9 123 60-182 464-604 (903)
206 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00029 6.3E-09 65.5 10.6 131 19-149 35-185 (390)
207 PF10300 DUF3808: Protein of u 97.7 0.00051 1.1E-08 68.9 12.5 104 62-167 247-356 (468)
208 KOG1586 Protein required for f 97.7 0.0019 4E-08 57.5 14.1 134 54-187 79-231 (288)
209 KOG4507 Uncharacterized conser 97.6 0.00012 2.5E-09 72.5 6.8 106 90-195 613-720 (886)
210 PLN03081 pentatricopeptide (PP 97.6 0.00081 1.8E-08 71.0 13.8 119 60-184 372-494 (697)
211 PF03704 BTAD: Bacterial trans 97.6 0.002 4.3E-08 53.8 13.1 91 89-179 11-124 (146)
212 KOG1941 Acetylcholine receptor 97.6 0.0011 2.5E-08 62.3 12.3 156 14-182 21-193 (518)
213 PRK04841 transcriptional regul 97.5 0.0012 2.6E-08 71.7 14.1 121 60-180 421-560 (903)
214 PF12968 DUF3856: Domain of Un 97.5 0.0017 3.6E-08 51.6 10.6 92 89-180 14-129 (144)
215 KOG4340 Uncharacterized conser 97.5 0.00053 1.2E-08 63.0 8.8 112 59-174 123-264 (459)
216 PLN03077 Protein ECB2; Provisi 97.5 0.0016 3.5E-08 70.4 14.2 118 60-184 536-657 (857)
217 PF13181 TPR_8: Tetratricopept 97.5 0.00019 4.1E-09 44.0 3.9 31 152-182 2-32 (34)
218 COG3071 HemY Uncharacterized e 97.4 0.0025 5.4E-08 60.7 12.3 82 96-178 306-388 (400)
219 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.0011 2.3E-08 45.3 7.2 44 152-195 2-45 (53)
220 PF13181 TPR_8: Tetratricopept 97.4 0.00033 7.2E-09 42.8 4.0 32 118-149 2-33 (34)
221 KOG2471 TPR repeat-containing 97.3 0.00081 1.7E-08 65.5 8.1 114 83-196 239-380 (696)
222 KOG3785 Uncharacterized conser 97.3 0.00078 1.7E-08 63.2 7.6 85 93-177 31-117 (557)
223 PRK10941 hypothetical protein; 97.3 0.0029 6.3E-08 58.5 10.9 72 117-188 181-252 (269)
224 KOG0546 HSP90 co-chaperone CPR 97.3 0.00036 7.8E-09 65.4 4.8 112 87-198 225-356 (372)
225 KOG2053 Mitochondrial inherita 97.2 0.003 6.5E-08 65.6 11.7 124 60-186 21-145 (932)
226 KOG3081 Vesicle coat complex C 97.2 0.0063 1.4E-07 55.2 12.4 131 60-198 120-254 (299)
227 KOG1915 Cell cycle control pro 97.2 0.027 5.8E-07 55.1 17.2 122 60-184 85-207 (677)
228 KOG2471 TPR repeat-containing 97.2 0.00037 8E-09 67.8 4.7 105 59-163 251-381 (696)
229 KOG2796 Uncharacterized conser 97.2 0.0031 6.8E-08 57.1 9.8 92 59-150 223-319 (366)
230 COG3071 HemY Uncharacterized e 97.2 0.021 4.6E-07 54.5 15.8 122 59-182 95-218 (400)
231 COG2976 Uncharacterized protei 97.2 0.012 2.6E-07 51.1 12.7 97 86-184 91-192 (207)
232 PF05843 Suf: Suppressor of fo 97.1 0.014 3E-07 54.5 14.1 100 86-185 3-104 (280)
233 COG3118 Thioredoxin domain-con 97.1 0.014 2.9E-07 54.0 13.0 136 60-199 146-286 (304)
234 PF15015 NYD-SP12_N: Spermatog 97.0 0.0052 1.1E-07 59.0 10.3 92 88-179 180-290 (569)
235 KOG4151 Myosin assembly protei 97.0 0.004 8.6E-08 64.1 9.4 114 85-198 54-174 (748)
236 PF13174 TPR_6: Tetratricopept 96.8 0.0026 5.6E-08 38.3 4.2 29 120-148 3-31 (33)
237 KOG1070 rRNA processing protei 96.8 0.034 7.3E-07 60.7 14.8 141 62-205 1511-1664(1710)
238 PF10602 RPN7: 26S proteasome 96.8 0.024 5.2E-07 49.2 11.4 97 85-181 37-143 (177)
239 PF05843 Suf: Suppressor of fo 96.8 0.035 7.6E-07 51.9 13.4 121 64-186 17-142 (280)
240 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0082 1.8E-07 41.0 6.7 42 118-159 2-43 (53)
241 PF04184 ST7: ST7 protein; In 96.7 0.015 3.3E-07 57.2 11.0 116 60-179 180-323 (539)
242 PF13176 TPR_7: Tetratricopept 96.7 0.0027 5.8E-08 39.6 4.0 22 121-142 3-24 (36)
243 smart00028 TPR Tetratricopepti 96.7 0.0028 6.1E-08 36.8 4.0 29 120-148 4-32 (34)
244 PF04184 ST7: ST7 protein; In 96.7 0.045 9.8E-07 54.0 14.1 104 84-187 259-382 (539)
245 PF13174 TPR_6: Tetratricopept 96.7 0.0026 5.7E-08 38.2 3.8 33 152-184 1-33 (33)
246 KOG3364 Membrane protein invol 96.7 0.039 8.5E-07 45.0 11.4 79 114-192 29-112 (149)
247 PF03704 BTAD: Bacterial trans 96.7 0.018 4E-07 47.8 10.2 60 86-145 64-124 (146)
248 COG3898 Uncharacterized membra 96.7 0.05 1.1E-06 52.1 13.8 122 60-184 166-296 (531)
249 KOG1586 Protein required for f 96.7 0.016 3.5E-07 51.7 9.8 93 94-186 83-189 (288)
250 PRK10941 hypothetical protein; 96.7 0.018 3.9E-07 53.3 10.7 74 86-159 183-257 (269)
251 KOG3824 Huntingtin interacting 96.7 0.0058 1.3E-07 56.5 7.2 100 83-182 115-219 (472)
252 KOG2053 Mitochondrial inherita 96.7 0.044 9.4E-07 57.3 14.2 90 94-183 19-109 (932)
253 PF13281 DUF4071: Domain of un 96.6 0.078 1.7E-06 51.2 15.0 128 61-190 195-344 (374)
254 PF04781 DUF627: Protein of un 96.6 0.029 6.2E-07 44.3 9.4 89 92-180 4-107 (111)
255 PF09986 DUF2225: Uncharacteri 96.5 0.043 9.3E-07 49.1 11.8 92 94-185 87-199 (214)
256 KOG4507 Uncharacterized conser 96.5 0.017 3.7E-07 57.7 9.8 105 83-187 211-319 (886)
257 KOG3824 Huntingtin interacting 96.5 0.011 2.4E-07 54.7 8.0 70 119-188 118-187 (472)
258 PF13176 TPR_7: Tetratricopept 96.5 0.0044 9.6E-08 38.6 3.8 29 153-181 1-29 (36)
259 smart00028 TPR Tetratricopepti 96.5 0.0044 9.6E-08 35.9 3.7 33 152-184 2-34 (34)
260 KOG4814 Uncharacterized conser 96.5 0.033 7.1E-07 56.2 11.4 96 86-181 356-458 (872)
261 KOG2300 Uncharacterized conser 96.4 0.031 6.6E-07 54.8 10.6 119 60-181 335-475 (629)
262 PF04781 DUF627: Protein of un 96.4 0.023 5.1E-07 44.8 8.1 88 59-146 7-107 (111)
263 PF10300 DUF3808: Protein of u 96.4 0.11 2.5E-06 52.1 15.1 125 61-186 201-340 (468)
264 KOG2610 Uncharacterized conser 96.4 0.06 1.3E-06 50.6 11.8 127 59-185 148-283 (491)
265 PF12968 DUF3856: Domain of Un 96.4 0.05 1.1E-06 43.4 9.7 85 62-146 23-129 (144)
266 PF02259 FAT: FAT domain; Int 96.3 0.075 1.6E-06 50.8 12.8 104 60-163 158-304 (352)
267 COG4976 Predicted methyltransf 96.2 0.0079 1.7E-07 53.5 5.0 56 129-184 7-62 (287)
268 KOG2047 mRNA splicing factor [ 96.2 0.074 1.6E-06 53.9 12.1 147 60-206 399-581 (835)
269 PF09986 DUF2225: Uncharacteri 96.0 0.1 2.2E-06 46.7 11.4 99 60-158 89-207 (214)
270 COG3914 Spy Predicted O-linked 96.0 0.18 3.9E-06 50.7 13.7 127 67-193 50-184 (620)
271 PF14561 TPR_20: Tetratricopep 95.9 0.063 1.4E-06 41.0 8.2 64 136-199 7-72 (90)
272 KOG2047 mRNA splicing factor [ 95.9 0.34 7.5E-06 49.3 15.2 145 60-204 359-540 (835)
273 PF08631 SPO22: Meiosis protei 95.7 0.55 1.2E-05 43.7 15.5 124 59-182 4-152 (278)
274 COG2976 Uncharacterized protei 95.7 0.047 1E-06 47.5 7.4 91 60-150 101-192 (207)
275 KOG1070 rRNA processing protei 95.7 0.24 5.1E-06 54.5 14.1 125 60-186 1542-1669(1710)
276 KOG1585 Protein required for f 95.7 0.38 8.2E-06 43.5 13.2 97 86-182 33-141 (308)
277 KOG2396 HAT (Half-A-TPR) repea 95.5 0.3 6.5E-06 48.3 13.0 92 103-194 90-183 (568)
278 PF13374 TPR_10: Tetratricopep 95.3 0.037 8.1E-07 34.9 4.3 27 119-145 4-30 (42)
279 COG0790 FOG: TPR repeat, SEL1 95.2 0.8 1.7E-05 42.6 14.9 115 62-182 91-222 (292)
280 COG2912 Uncharacterized conser 95.2 0.32 6.9E-06 44.7 11.5 72 117-188 181-252 (269)
281 COG4976 Predicted methyltransf 95.1 0.034 7.3E-07 49.5 4.8 56 95-150 6-62 (287)
282 PF09613 HrpB1_HrpK: Bacterial 95.0 0.42 9.2E-06 40.4 10.8 81 87-167 13-94 (160)
283 PF14561 TPR_20: Tetratricopep 95.0 0.27 5.8E-06 37.5 8.9 46 105-150 9-55 (90)
284 KOG1550 Extracellular protein 94.9 0.44 9.5E-06 49.0 13.1 118 61-181 262-394 (552)
285 KOG3617 WD40 and TPR repeat-co 94.9 0.1 2.2E-06 54.4 8.1 107 60-178 870-994 (1416)
286 KOG3364 Membrane protein invol 94.9 0.31 6.8E-06 39.9 9.4 77 83-159 31-113 (149)
287 PRK15180 Vi polysaccharide bio 94.9 0.15 3.2E-06 50.1 8.9 124 59-184 300-424 (831)
288 PF13374 TPR_10: Tetratricopep 94.9 0.05 1.1E-06 34.3 4.0 30 84-113 2-31 (42)
289 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.25 5.5E-06 36.4 7.9 62 85-146 7-72 (80)
290 KOG1585 Protein required for f 94.8 0.46 1E-05 42.9 11.0 121 58-178 40-177 (308)
291 PRK13184 pknD serine/threonine 94.8 0.25 5.4E-06 53.4 11.1 98 90-188 481-589 (932)
292 COG0790 FOG: TPR repeat, SEL1 94.7 0.97 2.1E-05 42.1 13.9 116 62-183 127-269 (292)
293 KOG1310 WD40 repeat protein [G 94.6 0.12 2.5E-06 51.4 7.4 91 59-151 385-479 (758)
294 PF02259 FAT: FAT domain; Int 94.5 1 2.3E-05 42.8 14.1 113 83-195 145-302 (352)
295 KOG0530 Protein farnesyltransf 94.3 0.94 2E-05 41.4 11.9 121 65-187 60-183 (318)
296 PF13281 DUF4071: Domain of un 94.3 0.91 2E-05 44.0 12.7 103 82-184 139-259 (374)
297 PF09613 HrpB1_HrpK: Bacterial 94.1 0.81 1.8E-05 38.7 10.6 89 117-205 10-98 (160)
298 COG3898 Uncharacterized membra 94.1 1.5 3.2E-05 42.4 13.2 119 60-179 96-216 (531)
299 PF12862 Apc5: Anaphase-promot 93.9 0.24 5.2E-06 38.0 6.7 52 95-146 9-70 (94)
300 PF07079 DUF1347: Protein of u 93.9 3.8 8.2E-05 40.4 15.9 133 64-204 396-545 (549)
301 COG2912 Uncharacterized conser 93.7 0.46 1E-05 43.6 8.9 73 87-159 184-257 (269)
302 COG5191 Uncharacterized conser 93.5 0.22 4.8E-06 46.4 6.6 91 108-198 97-189 (435)
303 PF08631 SPO22: Meiosis protei 93.0 1.8 4E-05 40.2 12.2 95 94-188 3-124 (278)
304 KOG0686 COP9 signalosome, subu 92.9 0.69 1.5E-05 44.7 9.0 93 86-178 152-256 (466)
305 COG4649 Uncharacterized protei 92.7 6.1 0.00013 34.1 15.4 118 62-179 72-195 (221)
306 PF10516 SHNi-TPR: SHNi-TPR; 92.6 0.17 3.8E-06 31.9 3.2 29 152-180 2-30 (38)
307 PF10516 SHNi-TPR: SHNi-TPR; 92.6 0.21 4.6E-06 31.5 3.6 29 118-146 2-30 (38)
308 PF12862 Apc5: Anaphase-promot 92.5 0.56 1.2E-05 36.0 6.7 58 126-183 7-73 (94)
309 KOG2300 Uncharacterized conser 92.5 2.6 5.7E-05 41.8 12.5 123 60-182 379-516 (629)
310 PF10373 EST1_DNA_bind: Est1 D 92.3 0.54 1.2E-05 43.3 7.6 61 67-129 1-62 (278)
311 KOG0530 Protein farnesyltransf 92.2 2.4 5.2E-05 38.8 11.2 105 95-199 54-161 (318)
312 PF08424 NRDE-2: NRDE-2, neces 92.1 4.9 0.00011 38.3 14.1 117 64-182 47-185 (321)
313 PF10602 RPN7: 26S proteasome 92.0 1 2.3E-05 38.9 8.6 91 56-146 43-142 (177)
314 PF10373 EST1_DNA_bind: Est1 D 92.0 0.63 1.4E-05 42.9 7.7 61 103-163 1-62 (278)
315 KOG0546 HSP90 co-chaperone CPR 91.6 0.17 3.7E-06 47.9 3.3 114 54-167 227-359 (372)
316 COG3118 Thioredoxin domain-con 91.5 2.3 5.1E-05 39.5 10.5 103 88-195 138-246 (304)
317 TIGR02561 HrpB1_HrpK type III 91.1 2.9 6.2E-05 35.0 9.7 86 119-204 12-97 (153)
318 KOG2396 HAT (Half-A-TPR) repea 90.9 2 4.4E-05 42.7 10.0 88 66-155 89-178 (568)
319 PF07720 TPR_3: Tetratricopept 90.3 0.88 1.9E-05 28.3 4.7 29 154-182 4-34 (36)
320 PF10345 Cohesin_load: Cohesin 90.3 13 0.00028 38.7 16.3 121 66-187 39-177 (608)
321 PRK13184 pknD serine/threonine 90.1 2.5 5.3E-05 46.0 10.8 124 60-186 487-626 (932)
322 TIGR02561 HrpB1_HrpK type III 90.0 4 8.8E-05 34.1 9.6 81 87-167 13-94 (153)
323 PF07721 TPR_4: Tetratricopept 89.9 0.43 9.4E-06 27.1 2.8 16 122-137 6-21 (26)
324 COG2909 MalT ATP-dependent tra 89.9 7.9 0.00017 41.2 13.8 114 88-201 419-551 (894)
325 PF15015 NYD-SP12_N: Spermatog 89.9 0.77 1.7E-05 44.6 6.1 89 57-145 185-290 (569)
326 PF08424 NRDE-2: NRDE-2, neces 89.9 7.8 0.00017 36.9 13.1 114 68-183 5-134 (321)
327 KOG0529 Protein geranylgeranyl 89.9 10 0.00023 36.9 13.7 130 66-195 47-193 (421)
328 PF04910 Tcf25: Transcriptiona 89.8 4.8 0.0001 39.0 11.7 124 60-183 52-225 (360)
329 KOG1550 Extracellular protein 89.7 5.6 0.00012 40.9 12.8 111 63-180 308-426 (552)
330 COG3629 DnrI DNA-binding trans 89.7 2 4.2E-05 40.0 8.4 80 100-180 137-216 (280)
331 KOG3616 Selective LIM binding 89.7 1.7 3.7E-05 45.1 8.6 114 54-177 770-908 (1636)
332 PF04910 Tcf25: Transcriptiona 89.2 4 8.6E-05 39.6 10.6 50 62-111 8-67 (360)
333 PF07720 TPR_3: Tetratricopept 89.2 1.3 2.8E-05 27.5 4.7 29 120-148 4-34 (36)
334 KOG0529 Protein geranylgeranyl 89.1 6.5 0.00014 38.3 11.6 126 63-190 90-234 (421)
335 PF07721 TPR_4: Tetratricopept 88.8 0.57 1.2E-05 26.6 2.8 24 152-175 2-25 (26)
336 KOG3617 WD40 and TPR repeat-co 88.6 3.8 8.2E-05 43.3 10.2 63 117-179 858-940 (1416)
337 cd02682 MIT_AAA_Arch MIT: doma 88.4 7.1 0.00015 28.6 8.9 31 170-200 32-62 (75)
338 KOG2041 WD40 repeat protein [G 88.4 3 6.4E-05 43.2 9.2 80 86-176 798-877 (1189)
339 KOG4814 Uncharacterized conser 88.3 3 6.5E-05 42.7 9.1 71 119-189 356-432 (872)
340 PRK15180 Vi polysaccharide bio 87.9 6.8 0.00015 39.0 11.0 113 94-206 299-422 (831)
341 COG3947 Response regulator con 87.7 2.1 4.6E-05 39.8 7.1 58 119-176 281-338 (361)
342 PF07079 DUF1347: Protein of u 87.3 2.6 5.7E-05 41.5 7.8 52 91-142 469-520 (549)
343 PF11207 DUF2989: Protein of u 87.2 2.9 6.4E-05 36.8 7.5 70 100-171 122-198 (203)
344 KOG2581 26S proteasome regulat 87.1 9 0.0002 37.3 11.2 100 86-185 171-281 (493)
345 PF10579 Rapsyn_N: Rapsyn N-te 86.7 5.8 0.00012 29.4 7.6 60 120-179 9-71 (80)
346 COG4941 Predicted RNA polymera 86.7 5.2 0.00011 38.0 9.1 127 60-188 268-402 (415)
347 PF11817 Foie-gras_1: Foie gra 85.9 3.4 7.3E-05 37.7 7.7 61 117-177 178-244 (247)
348 cd02682 MIT_AAA_Arch MIT: doma 85.9 6 0.00013 29.0 7.3 29 84-112 6-34 (75)
349 KOG0686 COP9 signalosome, subu 85.7 3.9 8.4E-05 39.7 8.0 177 20-199 124-328 (466)
350 PF09670 Cas_Cas02710: CRISPR- 85.7 5.8 0.00012 38.8 9.5 64 83-146 130-198 (379)
351 PF10255 Paf67: RNA polymerase 85.5 3.9 8.4E-05 40.1 8.2 95 88-183 126-231 (404)
352 KOG1839 Uncharacterized protei 84.5 3.9 8.5E-05 45.2 8.3 121 59-179 984-1127(1236)
353 PF11207 DUF2989: Protein of u 84.3 13 0.00028 32.8 10.0 74 63-138 121-199 (203)
354 KOG1839 Uncharacterized protei 83.9 5.1 0.00011 44.3 8.8 99 83-181 972-1087(1236)
355 PF11817 Foie-gras_1: Foie gra 83.5 8.3 0.00018 35.2 9.1 55 88-142 182-243 (247)
356 COG3914 Spy Predicted O-linked 83.3 16 0.00035 37.2 11.4 104 60-165 79-190 (620)
357 KOG4014 Uncharacterized conser 83.0 17 0.00036 31.7 9.9 96 83-181 67-198 (248)
358 PF10255 Paf67: RNA polymerase 82.4 2.5 5.3E-05 41.5 5.4 59 120-179 125-192 (404)
359 COG5191 Uncharacterized conser 82.1 2.7 5.9E-05 39.4 5.2 84 71-156 96-181 (435)
360 PHA02537 M terminase endonucle 82.0 8.6 0.00019 34.7 8.3 25 59-83 94-118 (230)
361 COG3629 DnrI DNA-binding trans 81.2 9.1 0.0002 35.6 8.3 61 86-146 155-216 (280)
362 KOG2041 WD40 repeat protein [G 80.5 10 0.00023 39.4 9.0 108 61-191 747-858 (1189)
363 TIGR03504 FimV_Cterm FimV C-te 79.8 4.2 9.1E-05 26.5 4.1 25 155-179 3-27 (44)
364 PHA02537 M terminase endonucle 79.4 3.5 7.6E-05 37.2 4.9 104 94-198 93-224 (230)
365 PF13041 PPR_2: PPR repeat fam 78.3 9.7 0.00021 24.9 5.8 39 84-122 3-43 (50)
366 COG2909 MalT ATP-dependent tra 78.2 28 0.00061 37.3 11.6 106 60-165 427-551 (894)
367 COG4455 ImpE Protein of avirul 77.7 14 0.0003 33.2 7.9 58 127-184 11-68 (273)
368 KOG3616 Selective LIM binding 77.5 13 0.00028 39.1 8.6 91 87-177 664-791 (1636)
369 PF11846 DUF3366: Domain of un 76.6 9.3 0.0002 33.2 6.8 48 101-148 128-175 (193)
370 KOG2581 26S proteasome regulat 76.5 35 0.00076 33.4 10.8 55 62-116 223-279 (493)
371 PF04053 Coatomer_WDAD: Coatom 75.5 38 0.00083 33.9 11.4 45 95-143 329-373 (443)
372 KOG1914 mRNA cleavage and poly 75.5 1E+02 0.0022 31.6 13.9 71 72-145 10-81 (656)
373 PF14863 Alkyl_sulf_dimr: Alky 75.3 16 0.00034 30.4 7.4 50 117-166 70-119 (141)
374 PF10345 Cohesin_load: Cohesin 75.3 31 0.00068 35.9 11.3 90 86-175 303-428 (608)
375 TIGR03504 FimV_Cterm FimV C-te 75.0 5.5 0.00012 25.9 3.6 25 121-145 3-27 (44)
376 PF12854 PPR_1: PPR repeat 74.4 8.3 0.00018 23.3 4.2 23 118-140 8-30 (34)
377 KOG1258 mRNA processing protei 73.5 1.1E+02 0.0025 31.3 15.3 111 60-172 309-421 (577)
378 cd02683 MIT_1 MIT: domain cont 72.2 23 0.00049 26.1 6.8 33 169-201 31-63 (77)
379 TIGR02710 CRISPR-associated pr 72.2 45 0.00098 32.5 10.7 55 88-142 134-196 (380)
380 PF12854 PPR_1: PPR repeat 71.5 8.4 0.00018 23.2 3.7 27 83-109 6-32 (34)
381 PF10952 DUF2753: Protein of u 71.1 16 0.00034 29.6 6.0 56 87-142 4-75 (140)
382 KOG3783 Uncharacterized conser 71.0 38 0.00083 34.3 10.0 81 66-148 251-334 (546)
383 KOG3807 Predicted membrane pro 71.0 98 0.0021 29.7 12.1 93 88-182 188-306 (556)
384 PF04212 MIT: MIT (microtubule 70.6 8.7 0.00019 27.3 4.2 26 87-112 8-33 (69)
385 PF09205 DUF1955: Domain of un 70.4 40 0.00087 27.9 8.3 63 118-180 86-149 (161)
386 smart00386 HAT HAT (Half-A-TPR 70.3 10 0.00022 21.6 3.9 28 165-192 1-28 (33)
387 COG4649 Uncharacterized protei 69.7 75 0.0016 27.6 10.3 101 60-163 106-212 (221)
388 KOG3783 Uncharacterized conser 69.3 54 0.0012 33.2 10.6 67 117-183 449-523 (546)
389 KOG2422 Uncharacterized conser 68.9 1.4E+02 0.0029 30.9 13.2 34 154-187 345-379 (665)
390 KOG0985 Vesicle coat protein c 68.7 1.4E+02 0.0031 33.0 13.9 93 88-187 1198-1315(1666)
391 KOG4279 Serine/threonine prote 68.2 50 0.0011 35.0 10.3 129 60-190 255-405 (1226)
392 PF11846 DUF3366: Domain of un 68.0 29 0.00064 30.1 7.9 50 133-183 127-176 (193)
393 COG3947 Response regulator con 68.0 19 0.00042 33.6 6.7 55 89-143 284-339 (361)
394 COG5159 RPN6 26S proteasome re 67.6 64 0.0014 30.3 9.9 119 60-178 15-152 (421)
395 cd02681 MIT_calpain7_1 MIT: do 67.5 9.8 0.00021 28.0 3.9 27 87-113 9-35 (76)
396 KOG4151 Myosin assembly protei 67.0 11 0.00024 39.5 5.6 106 59-164 64-174 (748)
397 COG5536 BET4 Protein prenyltra 66.9 25 0.00054 32.7 7.2 131 64-194 90-236 (328)
398 smart00386 HAT HAT (Half-A-TPR 66.3 15 0.00032 20.9 4.0 29 131-159 1-29 (33)
399 PF12739 TRAPPC-Trs85: ER-Golg 65.8 53 0.0011 32.5 10.0 94 87-180 211-329 (414)
400 PF04348 LppC: LppC putative l 65.8 2 4.3E-05 44.0 0.0 96 86-181 26-128 (536)
401 PRK11619 lytic murein transgly 64.7 90 0.002 32.9 11.9 118 62-179 255-374 (644)
402 smart00745 MIT Microtubule Int 64.3 28 0.00061 25.2 6.0 32 170-201 34-65 (77)
403 COG3014 Uncharacterized protei 64.2 1.3E+02 0.0029 28.9 11.5 116 69-184 42-227 (449)
404 COG4455 ImpE Protein of avirul 63.6 1.1E+02 0.0025 27.5 11.9 61 91-151 8-69 (273)
405 PF14863 Alkyl_sulf_dimr: Alky 63.2 43 0.00093 27.8 7.5 51 150-200 69-119 (141)
406 KOG1258 mRNA processing protei 63.1 1.2E+02 0.0026 31.2 11.8 102 86-187 299-402 (577)
407 KOG1914 mRNA cleavage and poly 62.3 45 0.00097 34.0 8.5 71 108-179 10-81 (656)
408 COG5187 RPN7 26S proteasome re 61.9 1.1E+02 0.0025 28.7 10.4 96 83-178 114-219 (412)
409 PF04212 MIT: MIT (microtubule 59.4 60 0.0013 22.9 9.1 16 127-142 15-30 (69)
410 KOG0276 Vesicle coat complex C 59.2 53 0.0012 33.9 8.5 18 160-177 730-747 (794)
411 cd02683 MIT_1 MIT: domain cont 59.2 68 0.0015 23.5 8.3 27 86-112 8-34 (77)
412 PF04190 DUF410: Protein of un 58.7 1.5E+02 0.0032 27.2 11.9 66 79-144 85-168 (260)
413 cd02656 MIT MIT: domain contai 58.3 43 0.00093 24.1 6.0 31 170-200 32-62 (75)
414 PF03745 DUF309: Domain of unk 57.9 62 0.0014 22.6 7.3 51 89-139 4-61 (62)
415 KOG1497 COP9 signalosome, subu 57.5 1.3E+02 0.0029 28.6 10.2 93 86-179 105-212 (399)
416 cd02678 MIT_VPS4 MIT: domain c 57.2 52 0.0011 23.8 6.3 15 170-184 32-46 (75)
417 KOG0985 Vesicle coat protein c 57.1 68 0.0015 35.3 9.2 29 151-179 1220-1248(1666)
418 PRK15490 Vi polysaccharide bio 56.3 1.6E+02 0.0035 30.5 11.6 83 96-183 20-103 (578)
419 PF04053 Coatomer_WDAD: Coatom 55.5 50 0.0011 33.0 7.8 75 89-178 300-374 (443)
420 PF02064 MAS20: MAS20 protein 55.4 29 0.00062 28.0 5.0 30 87-116 66-95 (121)
421 cd02684 MIT_2 MIT: domain cont 54.7 21 0.00045 26.1 3.7 26 87-112 9-34 (75)
422 smart00745 MIT Microtubule Int 54.7 22 0.00048 25.8 4.0 26 87-112 11-36 (77)
423 cd02681 MIT_calpain7_1 MIT: do 54.5 61 0.0013 23.8 6.2 17 127-143 16-32 (76)
424 cd02680 MIT_calpain7_2 MIT: do 54.2 24 0.00051 25.9 3.9 18 163-180 18-35 (75)
425 cd02678 MIT_VPS4 MIT: domain c 53.9 23 0.00051 25.7 4.0 26 87-112 9-34 (75)
426 KOG0890 Protein kinase of the 52.9 55 0.0012 39.0 8.3 48 127-174 1459-1506(2382)
427 KOG0687 26S proteasome regulat 52.8 2.1E+02 0.0046 27.4 10.8 93 86-178 106-208 (393)
428 cd02684 MIT_2 MIT: domain cont 52.6 88 0.0019 22.8 6.9 13 171-183 33-45 (75)
429 KOG0890 Protein kinase of the 51.3 1.6E+02 0.0035 35.4 11.6 100 84-184 1670-1788(2382)
430 PF09670 Cas_Cas02710: CRISPR- 51.0 2.5E+02 0.0053 27.4 11.7 61 120-180 134-198 (379)
431 PF02064 MAS20: MAS20 protein 50.9 48 0.001 26.7 5.6 39 155-193 67-105 (121)
432 PF01239 PPTA: Protein prenylt 50.7 48 0.0011 19.2 4.3 28 136-163 2-29 (31)
433 PF13041 PPR_2: PPR repeat fam 50.5 67 0.0014 20.7 6.8 30 117-146 3-32 (50)
434 PF10952 DUF2753: Protein of u 49.2 81 0.0018 25.6 6.5 66 120-185 4-88 (140)
435 cd02656 MIT MIT: domain contai 48.9 31 0.00068 24.9 4.0 25 88-112 10-34 (75)
436 KOG0292 Vesicle coat complex C 48.9 2.3E+02 0.0049 30.9 11.3 100 88-187 995-1120(1202)
437 KOG4563 Cell cycle-regulated h 48.7 30 0.00066 33.3 4.7 54 86-139 43-105 (400)
438 KOG0276 Vesicle coat complex C 48.7 90 0.0019 32.3 8.2 54 117-170 666-727 (794)
439 KOG3807 Predicted membrane pro 48.6 2E+02 0.0044 27.6 10.0 100 85-188 276-399 (556)
440 cd02680 MIT_calpain7_2 MIT: do 48.4 30 0.00065 25.3 3.7 25 89-113 11-35 (75)
441 cd02677 MIT_SNX15 MIT: domain 48.4 33 0.00071 25.1 4.0 25 88-112 10-34 (75)
442 PF01535 PPR: PPR repeat; Int 48.3 32 0.00069 19.3 3.3 14 94-107 10-23 (31)
443 PF13934 ELYS: Nuclear pore co 47.2 2.1E+02 0.0046 25.6 11.5 101 66-177 64-166 (226)
444 smart00671 SEL1 Sel1-like repe 47.1 42 0.00092 19.6 3.8 12 132-143 20-31 (36)
445 KOG1464 COP9 signalosome, subu 46.6 55 0.0012 30.4 5.9 116 62-177 41-171 (440)
446 KOG2561 Adaptor protein NUB1, 46.6 98 0.0021 30.7 7.8 94 86-179 165-295 (568)
447 cd02677 MIT_SNX15 MIT: domain 45.7 1.2E+02 0.0025 22.2 6.7 11 135-145 5-15 (75)
448 PF04190 DUF410: Protein of un 45.7 1.9E+02 0.0041 26.6 9.5 26 149-174 88-113 (260)
449 KOG2422 Uncharacterized conser 45.5 2E+02 0.0043 29.7 10.0 19 62-80 356-374 (665)
450 KOG2114 Vacuolar assembly/sort 45.5 1.5E+02 0.0032 31.9 9.4 31 83-113 367-397 (933)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 45.1 1.6E+02 0.0035 23.7 9.0 76 101-178 43-126 (126)
452 PF06957 COPI_C: Coatomer (COP 43.6 82 0.0018 31.2 7.0 99 88-186 208-335 (422)
453 PF08238 Sel1: Sel1 repeat; I 43.2 61 0.0013 19.4 4.2 10 134-143 25-34 (39)
454 KOG1463 26S proteasome regulat 42.9 93 0.002 29.9 6.9 123 60-182 180-318 (411)
455 PF07219 HemY_N: HemY protein 42.1 1.3E+02 0.0029 23.3 6.9 45 121-165 63-107 (108)
456 PF13226 DUF4034: Domain of un 41.8 2E+02 0.0043 26.8 8.9 34 167-200 115-148 (277)
457 PF09797 NatB_MDM20: N-acetylt 41.4 2.3E+02 0.005 27.2 9.9 76 101-176 152-242 (365)
458 TIGR00756 PPR pentatricopeptid 41.3 61 0.0013 18.3 3.9 17 126-142 9-25 (35)
459 COG1747 Uncharacterized N-term 41.3 3.7E+02 0.008 27.6 11.0 89 89-179 71-159 (711)
460 KOG1464 COP9 signalosome, subu 40.3 90 0.0019 29.1 6.2 50 96-145 39-93 (440)
461 PF09205 DUF1955: Domain of un 39.5 2.2E+02 0.0048 23.6 8.3 79 61-146 69-149 (161)
462 cd02679 MIT_spastin MIT: domai 39.4 50 0.0011 24.4 3.8 19 161-179 18-36 (79)
463 PF07219 HemY_N: HemY protein 39.1 1.5E+02 0.0033 23.1 6.8 49 84-132 59-108 (108)
464 COG3014 Uncharacterized protei 37.7 2E+02 0.0043 27.8 8.2 80 103-182 40-156 (449)
465 KOG0889 Histone acetyltransfer 37.6 8E+02 0.017 31.4 14.6 177 8-199 2686-2901(3550)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 37.4 2.2E+02 0.0047 22.9 10.3 43 102-144 81-126 (126)
467 cd02679 MIT_spastin MIT: domai 37.2 59 0.0013 24.1 3.8 16 129-144 20-35 (79)
468 KOG4563 Cell cycle-regulated h 37.1 63 0.0014 31.2 4.9 56 119-174 43-106 (400)
469 KOG0292 Vesicle coat complex C 36.5 2.4E+02 0.0053 30.7 9.3 95 60-154 1003-1121(1202)
470 PF02184 HAT: HAT (Half-A-TPR) 36.1 61 0.0013 19.6 3.0 23 99-121 2-24 (32)
471 PF13812 PPR_3: Pentatricopept 36.0 86 0.0019 17.8 4.1 20 123-142 7-26 (34)
472 COG4941 Predicted RNA polymera 35.4 2.9E+02 0.0063 26.6 8.9 94 62-159 310-407 (415)
473 PF15469 Sec5: Exocyst complex 35.3 2.6E+02 0.0057 23.8 8.4 24 165-188 153-176 (182)
474 TIGR00985 3a0801s04tom mitocho 34.4 79 0.0017 26.5 4.6 30 87-116 93-123 (148)
475 PF13226 DUF4034: Domain of un 34.1 3.9E+02 0.0085 24.9 9.7 64 104-167 63-149 (277)
476 COG5091 SGT1 Suppressor of G2 34.0 1.5E+02 0.0033 27.5 6.6 31 153-183 81-111 (368)
477 PF12753 Nro1: Nuclear pore co 32.9 59 0.0013 31.8 4.1 33 133-167 334-366 (404)
478 smart00299 CLH Clathrin heavy 32.6 2.6E+02 0.0056 22.3 10.3 44 62-108 21-64 (140)
479 KOG0128 RNA-binding protein SA 31.1 7.2E+02 0.015 27.0 13.3 118 62-182 93-221 (881)
480 KOG4521 Nuclear pore complex, 31.1 8.4E+02 0.018 27.8 12.6 133 11-168 903-1071(1480)
481 KOG4056 Translocase of outer m 30.6 38 0.00082 27.9 2.0 28 343-370 113-140 (143)
482 TIGR00985 3a0801s04tom mitocho 30.4 1.3E+02 0.0028 25.2 5.2 40 155-194 94-134 (148)
483 COG5091 SGT1 Suppressor of G2 30.3 63 0.0014 29.9 3.6 93 58-150 5-112 (368)
484 KOG1920 IkappaB kinase complex 30.3 3.1E+02 0.0067 30.9 9.2 19 91-109 959-977 (1265)
485 KOG2758 Translation initiation 29.9 2.5E+02 0.0054 26.9 7.4 20 118-137 130-149 (432)
486 PF05542 DUF760: Protein of un 29.8 61 0.0013 24.3 2.9 34 334-368 2-35 (86)
487 PF12753 Nro1: Nuclear pore co 29.6 88 0.0019 30.6 4.6 45 100-145 334-390 (404)
488 KOG2758 Translation initiation 29.3 2.9E+02 0.0062 26.5 7.7 76 68-146 115-196 (432)
489 KOG1811 Predicted Zn2+-binding 28.3 2E+02 0.0044 29.9 7.0 29 119-147 589-617 (1141)
490 PRK15490 Vi polysaccharide bio 27.7 4E+02 0.0086 27.7 9.2 74 126-203 17-90 (578)
491 KOG2997 F-box protein FBX9 [Ge 27.7 1.1E+02 0.0024 29.1 4.8 39 78-116 13-51 (366)
492 smart00299 CLH Clathrin heavy 27.6 3.2E+02 0.0069 21.8 7.4 48 93-141 16-64 (140)
493 cd08809 CARD_CARD9 Caspase act 26.6 51 0.0011 24.7 1.9 35 331-365 17-60 (86)
494 PF05053 Menin: Menin; InterP 26.4 1.5E+02 0.0033 30.4 5.8 31 148-178 315-345 (618)
495 KOG4014 Uncharacterized conser 26.1 4.6E+02 0.0099 23.1 14.3 95 60-161 85-210 (248)
496 PF05053 Menin: Menin; InterP 26.0 1.7E+02 0.0038 30.0 6.1 43 103-145 298-346 (618)
497 PF08626 TRAPPC9-Trs120: Trans 26.0 4.1E+02 0.0089 30.3 9.8 81 99-179 360-473 (1185)
498 PF09797 NatB_MDM20: N-acetylt 25.6 6E+02 0.013 24.3 10.2 44 99-142 198-242 (365)
499 COG4259 Uncharacterized protei 25.5 3.3E+02 0.0072 21.3 6.8 36 117-152 72-107 (121)
500 KOG1463 26S proteasome regulat 24.9 6.4E+02 0.014 24.4 11.8 148 59-206 139-318 (411)
No 1
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=245.36 Aligned_cols=198 Identities=38% Similarity=0.591 Sum_probs=152.6
Q ss_pred CchhHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccc-cccCCCCCCCCCCCCchhhHHHHHhhhh---
Q 017383 1 MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSL-KSAKKPSPSGNSYSRNYDPVSHISSSLM--- 76 (372)
Q Consensus 1 ~~~~~~~n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~y~~g~~~~A~~~~~~al~--- 76 (372)
+|+|+|+|++++|+|+++|++|+..|+.+|.+++++++...+...... ..... ..|.+...-..++.-++
T Consensus 10 lq~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~------ksGK~~~ssKK~Rs~I~~~d 83 (536)
T KOG4648|consen 10 LQRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTD------KSGKESPSSKKARSPIEKQD 83 (536)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccC------CCCCcCcchhhhhcchhhcc
Confidence 478999999999999999999999999999999999632221111000 00000 11222222222222111
Q ss_pred --cCCC----CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 77 --NEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 77 --~~p~----~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
.++- ...+.-++..|+.||++|+|++||.||.+++.++|. +..+.|||++|+++.+|..|+.+|+.|+.||..
T Consensus 84 L~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 84 LPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred CCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 1100 001122578999999999999999999999999996 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Q 017383 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204 (372)
Q Consensus 150 ~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~~ 204 (372)
+.++|.++|.++..+|+..+|..+++.+|.|.|++.+....++.+....++.+..
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHh
Confidence 9999999999999999999999999999999999999887777776665554433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-19 Score=174.08 Aligned_cols=184 Identities=24% Similarity=0.281 Sum_probs=155.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHH
Q 017383 12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL 90 (372)
Q Consensus 12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~ 90 (372)
++..+++....+++-..+.+.++.++ .-.++++++|+.| ..|+...|+.+|.++++++|...++ |.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp---------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA--YiNL 258 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQP---------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA--YINL 258 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCC---------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH--HhhH
Confidence 33444555555555556666666555 3344568899998 7899999999999999999997777 6699
Q ss_pred HHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383 91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (372)
Q Consensus 91 g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~ 169 (372)
|++|-..+.|+.|+.||.+|+.+.|+ +.++-|+|.+|+.+|..+-|+..|++||.++|+++.+|.++|.++..+|+..+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHHH----------HHHHHHHHHHHhhh
Q 017383 170 SIEDSEFALRLEPQNQEIKKQLA----------EVKSLYEKEVFQKA 206 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l~----------~a~~~~~~~~~~~~ 206 (372)
|..+|.++|.+.|+++++..+|+ .|..+|.+++.-.+
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 99999999999999998865544 44555555554443
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.8e-19 Score=158.71 Aligned_cols=119 Identities=42% Similarity=0.618 Sum_probs=112.8
Q ss_pred chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (372)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~ 160 (372)
..+..++..|+-+++.++|++|+..|++||+++|. +..|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.++|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35667899999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 161 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 161 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
|..+|++++|+..|+++|.++|+|..++..|..|...++.
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999898888766654
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=9.8e-18 Score=163.04 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=92.6
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~ 130 (372)
.++++.| .+|+.+-||..|+++|++.|+.+++ +.++|+++-..|+..+|..||.+||.+.|+ +++.+|+|.+|..+
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 5666666 7888888888888888888887666 447777777777777777777777777766 66666666666666
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
|.+++|...|.+|++..|..+.++.+||.+|...|++++|+.+|+.+|++.|...++
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 666666666666666666666666666666666666666666666666666665555
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=6.1e-17 Score=136.19 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=120.5
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
....|++++..+|+. +..+|.+++..|+|++|+.+|++++.++|. ..+|.++|.++..+|++++|+.+|++++.
T Consensus 12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 357899999999873 447899999999999999999999999998 99999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888776653
No 6
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-16 Score=149.48 Aligned_cols=173 Identities=30% Similarity=0.466 Sum_probs=147.3
Q ss_pred CCCCCCCCCCCchhhHHHHHhhhhcCCCCchH----------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----H
Q 017383 53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----A 117 (372)
Q Consensus 53 ~~~~~~y~~g~~~~A~~~~~~al~~~p~~~~a----------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~ 117 (372)
.|.-+.|..++.+.|+.+|+++|.++|....+ ..++..|+-.++.|+|..|.++|..+|.++|+ +
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 34444568899999999999999999987433 35778999999999999999999999999997 7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~ 197 (372)
.+|.|||.+...+|+..+|+.+|+.|+.+|+.+.++++++|.|+..+++|++|+++|++|+++.-+ .+.+..+.++...
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a 366 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA 366 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999887 6777777777776
Q ss_pred HHHHHH----------hhhhh-HHHHhccccchhcChhhh
Q 017383 198 YEKEVF----------QKASK-TLEKYGKSGMKVNGHEVR 226 (372)
Q Consensus 198 ~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~ 226 (372)
++++-. ..++. ...+++++.+-++||+..
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 665422 22222 236788888888888643
No 7
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=99.69 E-value=3e-17 Score=127.67 Aligned_cols=61 Identities=38% Similarity=0.717 Sum_probs=58.7
Q ss_pred CCCCCchhHHHHHHhhhcCCHHHHHHHHhhcCCCchhHHHHhhcCHHHHHHHHHHHhhhcC
Q 017383 312 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372 (372)
Q Consensus 312 ~~~p~~s~~f~~~~~~~~~~~~~~~~yl~~i~p~~l~~~f~~~l~~~~~~~i~~~l~~~~~ 372 (372)
|++|+|+|||+++||+++++++.+|+||++|+|+.||+||+++|++++|.+||++|+.+|+
T Consensus 1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~ 61 (94)
T PF13877_consen 1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFI 61 (94)
T ss_pred CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999999999999999999999998874
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.3e-16 Score=153.49 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=137.9
Q ss_pred CCccccccccccC--CCCCCCC-CCCCchhhHHHHHhhhhcCCC--C----------------------chHHHHHHHHH
Q 017383 40 KDNLVSSSLKSAK--KPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGN 92 (372)
Q Consensus 40 ~~~~~~~~~~~~~--~~~~~~y-~~g~~~~A~~~~~~al~~~p~--~----------------------~~a~~~~~~g~ 92 (372)
+++.+.++..+++ .++|..| ..++++.|+.+|.++|...-. . ..+...+..|+
T Consensus 287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 3455556666666 6789998 779999999999998863311 1 01224567899
Q ss_pred HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383 93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (372)
Q Consensus 93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~ 171 (372)
.+|+.|+|..|+.+|+++|..+|+ +.+|.|||.||.++|++..|+.+|..+++++|++.++|.+-|.++..+.+|+.|+
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 172 EDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
+.|++++.++|++.++...+.++....
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999887777765543
No 9
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.2e-16 Score=152.72 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=135.4
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~ 130 (372)
..+|++| -+++++.|+.+|++|+.++|. .+++|-.+|..+....+|+.|..+|+.||..+|. ..+|+.+|++|+++
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~--faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPR--FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCc--cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 5688889 568999999999999999999 4555669999999999999999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHH
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEK 200 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~ 200 (372)
++++.|+-.|++|+.++|.+......+|..+..+|+.++|+..|++|+.++|.++-.. +.+.+|...++.
T Consensus 503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997653 445555555555
Q ss_pred HHHhhhh
Q 017383 201 EVFQKAS 207 (372)
Q Consensus 201 ~~~~~~~ 207 (372)
....-|.
T Consensus 583 Lk~~vP~ 589 (638)
T KOG1126|consen 583 LKELVPQ 589 (638)
T ss_pred HHHhCcc
Confidence 4444433
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=2.7e-15 Score=155.26 Aligned_cols=145 Identities=12% Similarity=0.190 Sum_probs=116.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..|++++.++|....+ +..+|.+++..|+|++|+.+|+++++++|+ +.+|+++|.+++.+|++++|+.
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6788888888888888888874444 568888888888888888888888888887 8888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
+|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|+++.++ +.+.+|...|++++...+
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 88888888888888888888888888888888888888888888877664 445666666666665543
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=2.8e-15 Score=155.13 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=95.1
Q ss_pred CCCchhhHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
.++|++|+..|++++..+... ..+.++..+|.+++..|++++|+.+|+++++++|+ ..+|.++|.++..+|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 356667777777777653211 13444666677777777777777777777777776 6667777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
+|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.++|++..++ +.+.+|...+++++...+
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777777777777777777777777777777777777777777665553 234555555555555444
No 12
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.62 E-value=2.3e-14 Score=118.70 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=115.1
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383 69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (372)
Q Consensus 69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~ 147 (372)
+.|++++..+|.+..+ ...+|..++..|++++|+.+|++++..+|. ..++.++|.++..+|++++|+.++++++.++
T Consensus 4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4788999999985444 679999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 148 p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
|.++..++.+|.++...|++++|+..|+++++++|++.........+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876655544443
No 13
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=2.4e-14 Score=126.77 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=117.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHH-HHhcC--HHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQE 135 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~-~~~g~--~~e 135 (372)
..++.++++..+++++..+|++.++ |..+|.+|...|++++|+.+|++++.++|+ ..++.++|.++ ...|+ +++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3577889999999999999996665 669999999999999999999999999998 99999999985 67787 599
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
|+..++++++++|++..+++++|.++..+|++++|+.+|+++++++|.+..-..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999999999999999999999997654433
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3e-14 Score=134.08 Aligned_cols=121 Identities=34% Similarity=0.467 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
.+...+..|+.||+.|+|..|+..|++|+..-.. ..++.|++.||+++++|.+|+..|+++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4455788999999999999999999999886331 467899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 017383 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 203 (372)
Q Consensus 147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~ 203 (372)
+|+|++++|++|.++..+|+|+.|+.+|+++++++|+|..+...|..+...+++...
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888877766655433
No 15
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.4e-14 Score=133.36 Aligned_cols=145 Identities=19% Similarity=0.154 Sum_probs=131.6
Q ss_pred CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc
Q 017383 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR 131 (372)
Q Consensus 54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g 131 (372)
.+|+-| -.++.+.|+.+|+++|+++|....+ |-.+|..|..+++-..|+.+|++|++++|. -.+|+.+|.+|.-++
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 456666 5689999999999999999996666 458899999999999999999999999998 999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
-+.=|+-+|++|+.+.|++...|..+|.||..+++.++|+.+|..++.....+..+...|+++...+..
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888887666666555543
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.56 E-value=7.7e-14 Score=134.62 Aligned_cols=114 Identities=32% Similarity=0.457 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
+...|..++..|+|++|+.+|+++|+++|+ ..+|+++|.+|+.+|++++|+.++++|+.++|+++.+|+++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 166 ~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
+|++|+.+|++++.++|++..+...+..+...+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888888766643
No 17
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=4.9e-14 Score=120.46 Aligned_cols=108 Identities=36% Similarity=0.610 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 156 (372)
.+..++..|+-+|+.|+|++|...|..||++.|. ..+|.|+|.|+++++.++.|+.+|.+||+|+|.+.+++.+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 4456889999999999999999999999999987 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383 157 RATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (372)
Q Consensus 157 lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 190 (372)
++.+|..+.+|++|+.+|.+++.++|...+++..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 9999999999999999999999999998776543
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.56 E-value=1.3e-13 Score=129.93 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=116.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
..+..+.++..+.++|...+..+ .+..++.+|.+|...|++++|+..|+++++++|+ +.+|+++|.++..+|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34677889999999997544332 3567889999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
+..|+++++++|++..+|+++|.++...|++++|+.+|++++.++|+++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999999999873
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.3e-14 Score=138.15 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=146.0
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHH
Q 017383 14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN 92 (372)
Q Consensus 14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~ 92 (372)
+++-=.++.+.+|+.-...+.-.+ + ..+ +....|..+ ...+|+.|..+|+.||..+|.+..| |+.+|.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp---~-faY-----ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA--wYGlG~ 497 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDP---R-FAY-----AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA--WYGLGT 497 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCC---c-cch-----hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH--HHhhhh
Confidence 333334455556665555443332 0 000 113344444 5679999999999999999995555 789999
Q ss_pred HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383 93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (372)
Q Consensus 93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~ 171 (372)
+|.++++++.|.-+|++|++++|. ..+...+|..+.++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|+
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 999999999999999999999998 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 172 EDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
..+++.-.+-|++..++..++++.+.+++
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 99999999999999998888888777664
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.55 E-value=1.3e-13 Score=129.89 Aligned_cols=121 Identities=20% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383 56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
|..| ..|++++|+..|.++++.+|+++.+ ++.+|.++...|+|++|+.+|+++++++|+ ..++.++|.++...|++
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3444 7799999999999999999996555 779999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
++|+.+|+++++++|+++.....+ ......+++++|+..|.+++.
T Consensus 149 ~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 149 ELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence 999999999999999986321111 123446677777777765543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=2e-13 Score=146.15 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=117.1
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
.|++++|+..|++++..+|+ .. .+.++|.++.+.|++++|+.+|++++.++|+ +.++.++|.++..+|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~--a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-AN--AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 49999999999999999995 44 4779999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
|++|++++|+++.+++++|.++..+|++++|+.+|++++.++|++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 9999999999999999999999999999999999999999999987664
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=4.4e-13 Score=112.08 Aligned_cols=116 Identities=9% Similarity=-0.025 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
....++.+|..++..|++++|...|+-...++|. ...|++||.|+..+|+|.+|+..|.+|+.++|+++.++++.|.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4445789999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
..+|+.+.|...|+.++...-.+++......+|...+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999998865555444444444433
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=2.2e-13 Score=139.08 Aligned_cols=126 Identities=10% Similarity=-0.000 Sum_probs=114.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~ 129 (372)
..+++++|+.+|+++++++|++..+ +..+|.+|... +++++|+..++++++++|+ +.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999996555 55888877644 4589999999999999999 9999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.|++++|+..|++|++++|+++.+++.+|.++...|++++|+..|+++++++|.+..+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999998654
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=1.5e-13 Score=120.23 Aligned_cols=131 Identities=17% Similarity=0.096 Sum_probs=120.3
Q ss_pred CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383 56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
|..| ..||+..|...++++|+.+|+...+ |..++.+|.+.|+.+.|-+.|++|+.++|+ .++++|.|.-++.+|+|
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3345 8899999999999999999997666 559999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 134 QEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 134 ~eA~~~~~~Al~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
++|...|++|+.. .+..+.+|-|+|.|-.+.|+.+.|..+|+++|.++|+++...
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 9999999999984 355688999999999999999999999999999999997754
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.3e-13 Score=115.84 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=98.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..|++++|+..|.+++..+|.+..+ +..+|.++...|+|++|+.+|++++.++|+ +.+++++|.|+..+|++++|+
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 37899999999999999999995555 779999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
..|.+++.++|+++..+.++|.+...++
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998876553
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.52 E-value=1.4e-13 Score=126.26 Aligned_cols=217 Identities=20% Similarity=0.229 Sum_probs=163.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccC----------CCCCCCCCCCCchhhHHHHHhhhhc
Q 017383 8 QALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAK----------KPSPSGNSYSRNYDPVSHISSSLMN 77 (372)
Q Consensus 8 n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~y~~g~~~~A~~~~~~al~~ 77 (372)
|+.++-+-+-++.-|.-.+.......--........+.+.+...+ ....-.|..|+.+.++.....+|++
T Consensus 173 ~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 455555666666777777665444332221122222222222222 1111126889999999999999999
Q ss_pred CCCCchHHHH----------HHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 78 EESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 78 ~p~~~~a~~~----------~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
+|++.....+ ..-+......++|.++++.+++.++.+|. ...+..++.|+..-+++.+|+..|.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 9997544322 12344566789999999999999999998 34456678999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH----------HHhhhhhHH-H
Q 017383 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE----------VFQKASKTL-E 211 (372)
Q Consensus 143 Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~----------~~~~~~~~~-~ 211 (372)
+|.++|+++.++..++.+|..-..|+.|+.+|++|+.++++|..++..++.|.++..++ +.++++... -
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~ 412 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEIT 412 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877764 344444433 6
Q ss_pred HhccccchhcChh
Q 017383 212 KYGKSGMKVNGHE 224 (372)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (372)
++||+.+..|||+
T Consensus 413 KAYRKlAqkWHPD 425 (504)
T KOG0624|consen 413 KAYRKLAQKWHPD 425 (504)
T ss_pred HHHHHHHHhcCCc
Confidence 8999999999986
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=2.7e-13 Score=138.52 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=120.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..+++++|+..++++++++|+++.+ +..+|.++...|++++|+.+|+++++++|+ +.+++++|.++..+|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567899999999999999996665 668999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCcHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIKKQLAEVK 195 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~a~ 195 (372)
.++++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.+.
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 9999999999999888888888888999999999999999875 77777665555443
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=1.1e-12 Score=116.78 Aligned_cols=128 Identities=19% Similarity=0.138 Sum_probs=103.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--C-HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~~la~~~~~~g~~~eA 136 (372)
..|++++|+..|.+++...|.+..+ +..+|.+++..|++++|+.+|.+++...+ . ...+.++|.++...|++++|
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDV--LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 6788888888888888888775444 66888888888888888888888887542 2 66778888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
+..|.+++..+|++..++..+|.++...|++++|...+++++.+.|.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888888888888888888888888888888777665544
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=9e-13 Score=141.10 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
..|++++|+.+|.+++..+|..... +..++..+...|++++|+.+|+++++++|+..++.++|.++.++|++++|+..
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6789999999999999998875433 34566666777999999999999999999988999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhh
Q 017383 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK 208 (372)
Q Consensus 140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~ 208 (372)
|++++.++|+++.+++++|.++...|++++|+..|+++++++|+++.++ +.+.+|...|++++...+..
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999875 45667777888887777654
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.6e-12 Score=114.40 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=120.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..+++++..+|.+.. .+..+|.+++..|++++|+..|++++..+|. ..++.++|.++...|++++|+.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYL--AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 779999999999999999988544 4678999999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 139 DCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 139 ~~~~Al~l~--p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
.+.+++... +.....++.+|.++...|++++|...|.+++..+|++..++..+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 999999864 55678899999999999999999999999999999987776544443
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.45 E-value=2e-12 Score=134.56 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=115.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHH----HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~----Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~ 134 (372)
..|++++|+..|.+++..+|++.. .+..+|..++..|++++ |+.+|++++.++|+ ..++.++|.++...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~--~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAA--LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 568888888888888888887444 46688888888888875 78888888888888 888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHh
Q 017383 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQ 204 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~ 204 (372)
+|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++.... +...+|...|++++..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888888775432 3456666666666665
Q ss_pred hhh
Q 017383 205 KAS 207 (372)
Q Consensus 205 ~~~ 207 (372)
.+.
T Consensus 382 ~P~ 384 (656)
T PRK15174 382 RAS 384 (656)
T ss_pred Chh
Confidence 543
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.45 E-value=1.5e-12 Score=135.34 Aligned_cols=140 Identities=15% Similarity=0.106 Sum_probs=123.9
Q ss_pred CCCCchh----hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYD----PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~----A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~ 134 (372)
..|++++ |+..|++++..+|++.. ++..+|.++...|++++|+.+|++++.++|+ ..++.++|.+|..+|+++
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 6788886 89999999999999554 4679999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 017383 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 203 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~ 203 (372)
+|+..|++++..+|++..++..+|.++..+|++++|+..|++++.++|++. ...+.++...|.+++.
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999864 2444455555555433
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=5.4e-13 Score=121.01 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=107.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..++|.+|+..|.+||.++|. .+..|.+++.+|.++|.|+.|+..++.||.+||+ ..+|..+|.+|+.+|+|++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4779999999999999999999 5555779999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHcc
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLK---ESIEDSEFALRL 180 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~---~A~~~~~~al~l 180 (372)
+.|.+||.++|++...+.+|..+...++... .+...++.+..+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 9999999999999999999999999888776 444445444433
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.7e-12 Score=121.02 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=119.1
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~ 130 (372)
..+|..| .+.+...|++.|++|++++|. +-.+|+.+|..|--++-..=|+-+|++|+.+.|+ ...|..+|.||.++
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p~--DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDINPR--DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcCch--hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 6677777 889999999999999999999 5555889999999999999999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
++.++|+.+|.+|+........+++++|.+|.+++++++|..+|++.+..
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 35
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=8.5e-12 Score=118.21 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=123.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh-cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH--HH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF--QE 135 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~--~e 135 (372)
..+.+++|+..+.++|.++|.+..+ +..+|.++...| ++++|+.++++++..+|+ ..+|+.++.++.++|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4578899999999999999996655 668899999998 689999999999999999 89999999999999974 78
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
++.++.+++.++|.+..+|..+|.++..+|++++|+.++.++|+++|.|..++....-+..
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999876665543
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.5e-12 Score=124.34 Aligned_cols=109 Identities=36% Similarity=0.543 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
++..|+..+..|+|+.|+.+|..+|.++|. ...|.|+..||..+|+|.+|+.+..++++++|+.+++|.++|.++..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 567899999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 166 ~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
+|++|+..|.++|+++|+|......+.++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999998888887
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.39 E-value=6.2e-12 Score=138.84 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchH------------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDA------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA 126 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a------------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~ 126 (372)
..|++++|+.+|+++++.+|++... +....+|.++...|++++|+.+|++++.++|+ ..++..+|.+
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455555555555555555543221 11123344555555555555555555555554 4555555555
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYS 155 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 155 (372)
+..+|++++|+..|+++++++|++..++.
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55555555555555555555555544433
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1e-11 Score=108.74 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~e 135 (372)
..|+.+.|.+.|++++.++|++.+. +++.|..++.+|+|++|..+|++|+. +|. +..|.|+|.|.+++|+++.
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchh
Confidence 6799999999999999999996555 88999999999999999999999997 454 8999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
|..+|+++|+++|+++.+...++..++..|+|..|...++....-.+-..+......++.+.+
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~ 220 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL 220 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877776555443333333333
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=8.7e-12 Score=119.23 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=132.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
-.|++-.|...++.++.++|..... |..+|..|....+-++-...|.+|..+||. +++|+.||..++-+++|++|+.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 6699999999999999999987666 568999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
+|++|+.|+|+++-+|..++.+.++.++++++...|+.+.+..|+.+++. +.+..|.+.|.+++...+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999885 455556666666665554
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.3e-11 Score=118.16 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=135.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
+..+-++-...|.++..++|.+++. |+.+|.+++-.++|++|+..|++++.++|. +.+|..+|.+.++++++.+++.
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888899999999999997777 778999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------cHHH-----------HHHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVKSLYEKE 201 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~------~~~~-----------~~~l~~a~~~~~~~ 201 (372)
.|+.++...|+.+.+|...|.++...++++.|++.|.+|+.|.|. +... .+.+..+..++.++
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 3221 36788888899998
Q ss_pred HHhhhhhH
Q 017383 202 VFQKASKT 209 (372)
Q Consensus 202 ~~~~~~~~ 209 (372)
+..+|.-.
T Consensus 530 ~e~Dpkce 537 (606)
T KOG0547|consen 530 IELDPKCE 537 (606)
T ss_pred HccCchHH
Confidence 88887443
No 41
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.36 E-value=2.2e-11 Score=105.51 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=96.4
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 70 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 70 ~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
.+...+..++....+..++.+|..+...|++++|+.+|++++.+.|+ ..++.++|.++..+|++++|+..+.+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555655567778999999999999999999999999988765 57899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHccCCCc
Q 017383 146 LDDRYIKAYSRRATARKELGKL--------------KESIEDSEFALRLEPQN 184 (372)
Q Consensus 146 l~p~~~~a~~~lg~~~~~lg~~--------------~~A~~~~~~al~l~P~~ 184 (372)
++|.+..++..+|.++..+|+. ++|+..+++++.++|++
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999984 45555555555555544
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=2.2e-11 Score=125.97 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=123.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|.+++|...++.++.+.|++..+ +.++|.++.+.+++++|+..+++++..+|+ +.+++.+|.++..+|+|++|+.
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 6799999999999999999996666 559999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH----HHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----KKQLAEVKSLYEK 200 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----~~~l~~a~~~~~~ 200 (372)
.|++++..+|++..++..+|.++..+|+.++|...|++++.....-... ...+......|++
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRR 241 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987544332 2344444444443
No 43
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.7e-11 Score=111.07 Aligned_cols=107 Identities=36% Similarity=0.564 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (372)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 156 (372)
..|..++.-||.||+.++|..|+.+|.++|+.. |+ +.+|.|||.|.+.+|+|..|+.+|++|+.++|.+.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 367779999999999999999999999999964 44 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 157 RATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 157 lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
-+.|+..+.++++|..+++..+.++-....+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999988887666554
No 44
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.35 E-value=2.8e-11 Score=104.35 Aligned_cols=128 Identities=16% Similarity=0.071 Sum_probs=107.1
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~ 133 (372)
.|-...|..+...+...++..+....+..++.+|.++...|+|++|+.+|.+++.+.|+ +.++.++|.++..+|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 34455677788888777777777677888999999999999999999999999988765 56899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCcH
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~-------~lg~~~-------~A~~~~~~al~l~P~~~ 185 (372)
++|+..|++++.++|.+..++.++|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999 667766 45555556666666543
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.2e-12 Score=123.70 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=110.4
Q ss_pred CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141 (372)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~ 141 (372)
.+..-...|..+....|...++.++..+|..|+-.|+|++|+.||+.||...|+ ..+|+.+|.++..-.+.++|+..|+
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 344455677777777875556666779999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 142 ~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
+|++|.|.++.++|++|.++..+|.|++|..+|-.||.+.+.
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999876
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.34 E-value=2.3e-11 Score=118.52 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHhcCH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~~~~g~~ 133 (372)
..|++++|+..|.++++.+|.. ..++..+|.++...|+|++|+..|.+++...|. ...+.++|.++...|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 4455555555555555544432 222345555555555555555555555554433 12334455555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 55555555555555555555555555555555555555555555555444
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.2e-12 Score=122.12 Aligned_cols=135 Identities=22% Similarity=0.263 Sum_probs=112.7
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhc
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLR 131 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~g 131 (372)
..+++.-|..+|.+|+.+.|.++ ..++.+|.+.|..+.|.+|+.+|+.++..-+. ...+.|+|.++.+++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 46788888888888888988844 44778899999999999999999998843222 445889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
.+++|+.+++++|.+.|.++.++..+|.+|..+|+++.|++.|.++|-++|+|.-+...|..+..
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777666665443
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.33 E-value=2.5e-11 Score=134.11 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=119.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H--H------------HHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A--V------------AYANRA 124 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~--~------------~~~~la 124 (372)
..|++++|+..|+++++.+|.+..+ +..+|.+++..|++++|+.+|+++++++|+ . . .+..+|
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 6799999999999999999996555 679999999999999999999999999986 2 1 234568
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
.+++..|++++|+..|++++.++|++..+++.+|.++...|++++|+..|+++++++|++..++..+..+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998876554443
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=2.7e-11 Score=110.03 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=118.1
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHh---
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKL--- 130 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~--- 130 (372)
+..|++++|+..|++++...|.++.. .+++.+|.+++..|++++|+..|+++++.+|+ ..+++.+|.+++..
T Consensus 44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 37899999999999999999986532 35789999999999999999999999999997 45799999999987
Q ss_pred -----cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHccCCCcH---
Q 017383 131 -----RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLEPQNQ--- 185 (372)
Q Consensus 131 -----g~~~eA~~~~~~Al~l~p~~~~a~-----------------~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~--- 185 (372)
|++++|+..+++++..+|++..++ ..+|..+...|++.+|+..|++++...|+.+
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE 203 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence 899999999999999999985442 3678889999999999999999999988753
Q ss_pred HHHHHHHHHHHH
Q 017383 186 EIKKQLAEVKSL 197 (372)
Q Consensus 186 ~~~~~l~~a~~~ 197 (372)
+++..+..+...
T Consensus 204 ~a~~~l~~~~~~ 215 (235)
T TIGR03302 204 EALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 50
>PLN02789 farnesyltranstransferase
Probab=99.32 E-value=3.2e-11 Score=114.35 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=134.0
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCCC-CchhhHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 017383 16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYS-RNYDPVSHISSSLMNEESTPDATSEKELGNEC 94 (372)
Q Consensus 16 ~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g-~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~ 94 (372)
+...+..+.++...++.+...+..-.-...+...+ ..+| ++++++..+.+++..+|++..+ |..+|.++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL--------~~L~~~l~eeL~~~~~~i~~npknyqa--W~~R~~~l 116 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCL--------EALDADLEEELDFAEDVAEDNPKNYQI--WHHRRWLA 116 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHH--------HHcchhHHHHHHHHHHHHHHCCcchHH--hHHHHHHH
Confidence 34445566666666666654441111111111111 1445 6799999999999999996666 66889888
Q ss_pred HHhhcH--HHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH-
Q 017383 95 FKQKKF--KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKL- 167 (372)
Q Consensus 95 ~~~g~~--~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l---g~~- 167 (372)
...|+. ++++.++.++++++|+ ..+|..+|.++..+|+|++|+.+|.++|+++|.+..+|+.+|.++..+ |.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 888874 7899999999999998 999999999999999999999999999999999999999999998877 333
Q ss_pred ---HHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 168 ---KESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 168 ---~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
++++.+..+++.++|+|..++..+..+..
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 57888889999999999999977776654
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=3.8e-11 Score=127.75 Aligned_cols=124 Identities=18% Similarity=0.163 Sum_probs=62.7
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..|.+++...|.. ..+..+|.++...|++++|+..+++++..+|+ ..+++.+|.+|..+|++++|+.
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4455555555555555554442 12334455555555555555555555555544 4455555555555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.|++++..+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 5555555555555555555555555555 44555555555555544443
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.6e-11 Score=114.67 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..++++++...+.++....+...+...+..+|.++.+.|++++|+.+|+++++++|+ ..+...++.++...|+++++..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 567888888888887655432235666778999999999999999999999999998 8888899999999999999888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (372)
.+.......|.++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+....+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888899999999999999999999999999999998887777765444
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.30 E-value=7.2e-11 Score=94.79 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRA 158 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg 158 (372)
.++.+|..++..|+|++|+..|.+++..+|+ ..+++.+|.+++..|++++|+..|+.++..+|++ ..+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4679999999999999999999999999886 5789999999999999999999999999999885 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 159 TARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
.++..+|++++|+..|++++...|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 999999999999999999999999987654
No 54
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=8.4e-11 Score=88.45 Aligned_cols=97 Identities=40% Similarity=0.591 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
++.+|..++..|++++|+..+.+++...|. ..++..+|.++...|++++|+.+|++++.+.|.+..+++.+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 678999999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCC
Q 017383 166 KLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 166 ~~~~A~~~~~~al~l~P~ 183 (372)
+++.|...+.+++.+.|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
No 55
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=3.1e-11 Score=116.55 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=97.7
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|+|++|+.+|.+++..+|.+..+ +..+|.+|+..|+|++|+.++++++.++|+ +.+|+++|.+|+.+|+|++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57799999999999999999996555 679999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
.+|++++.++|++..+...++.+...+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988888776663
No 56
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.27 E-value=7.2e-11 Score=125.59 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=139.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE 89 (372)
Q Consensus 11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~ 89 (372)
.+...+....+|++++......+...+... . .....+..+ ..|++++|+..++......|..... +..
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~ 708 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNT-E--------AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG--FEL 708 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-H--------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH--HHH
Confidence 344555667788888877776665443111 0 001111222 6788899999999988888774444 668
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383 90 LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (372)
Q Consensus 90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~ 169 (372)
+|.+++..|+|++|+..|.+++...|+...+.++|.++...|++++|+..+++++..+|++..+++.+|.++..+|++++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 89999999999999999999999888877778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHH---------HHHHHHHHHHHHhhh
Q 017383 170 SIEDSEFALRLEPQNQEIKKQL---------AEVKSLYEKEVFQKA 206 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l---------~~a~~~~~~~~~~~~ 206 (372)
|+..|++++...|++..++..+ .++...+++++...+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Confidence 9999999999999887765443 334555666555443
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=1.7e-11 Score=89.24 Aligned_cols=65 Identities=34% Similarity=0.468 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP 182 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg-~~~~A~~~~~~al~l~P 182 (372)
.+|.++|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444555544444444
No 58
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=2.4e-11 Score=88.46 Aligned_cols=66 Identities=39% Similarity=0.648 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD 148 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p 148 (372)
.+..+..+|.+++..|+|++|+.+|+++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566889999999999999999999999999999 999999999999999 79999999999999998
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.27 E-value=1.4e-10 Score=112.98 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=117.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
..|++++|+..++.++...+... ....+..+|.+|+..|++++|+.+|.++++.+|. ..++..++.++...|++++|
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 160 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKA 160 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHH
Confidence 78899999999998888543221 2345778899999999999999999999988877 78888999999999999999
Q ss_pred HHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYI-----KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKE 201 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~-----~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~ 201 (372)
+..+.+++..+|.+. ..+..+|.++...|++++|+..|++++.++|++..++ +++.+|...+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 161 IDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999998887653 3566788889999999999999999999998876553 4566666666666
Q ss_pred HHhhh
Q 017383 202 VFQKA 206 (372)
Q Consensus 202 ~~~~~ 206 (372)
+...+
T Consensus 241 ~~~~p 245 (389)
T PRK11788 241 EEQDP 245 (389)
T ss_pred HHHCh
Confidence 65443
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=1.6e-10 Score=119.64 Aligned_cols=134 Identities=8% Similarity=0.006 Sum_probs=118.0
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
.....+..|++ +.++..+|.+....|.+++|...++.+++++|+ ..++.++|.++.+++++++|+..+++++..+|+
T Consensus 75 ~~~~~~~~~~~--~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 75 LLDYVRRYPHT--ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHhcccc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 33334445553 445779999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 150 ~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
++.+++.+|.++..+|+|++|+..|++++..+|++..++ +..++|...|++++....
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999988774 566777778887766554
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.24 E-value=2.3e-10 Score=121.32 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=110.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
-.|++++|+..|.++...+|. .+.++..+|..+...|++++|+.+|+++++++|. ..++..+|.++...|++++|+.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 457888888888888877766 4444668888889999999999999999998887 7888888889999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
.+++++..+|++.. ++.+|.++...|++++|+..|++++.+.|++..++..+..+
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998888 88889999999999999999999999999888876555443
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=1.5e-10 Score=105.03 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHH
Q 017383 18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECF 95 (372)
Q Consensus 18 ~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~ 95 (372)
..++|+.++...+..+...+..... ..+....|..| ..|++++|+..|+++++..|+++.+ .+++.+|.+++
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~------~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYA------EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 3467888888777766554411100 00011223344 7899999999999999999987653 35778999998
Q ss_pred Hh--------hcHHHHHHHHHHHHccCCC-HH---H--------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 96 KQ--------KKFKEAIDCYSRSIALSPT-AV---A--------------YANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 96 ~~--------g~~~~Ai~~y~~al~~~p~-~~---~--------------~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
.. |++++|+..|++++..+|+ .. + ...+|.+|+..|++.+|+..|++++...|+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 76 8999999999999999997 21 1 236789999999999999999999999775
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 150 ---YIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 150 ---~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
...+++++|.++..+|++++|..+++......|
T Consensus 199 ~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 199 TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 468999999999999999999998887766554
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-10 Score=113.28 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=120.7
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~ 130 (372)
-..|+-| ..|.+.+|..+|.++..++|....+| ...|+.|...|+.++|+.+|..|-++.|. ...+.-+|+-|..+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaW--l~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAW--LAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHH--HHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 4556555 66999999999999999999976664 46788888888888888888777777766 44445566666666
Q ss_pred cCHHHHHHHHHHHHhcCCCC-----------------------------------------HHHHHHHHHHHHHcCCHHH
Q 017383 131 RRFQEAEDDCTEALNLDDRY-----------------------------------------IKAYSRRATARKELGKLKE 169 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~-----------------------------------------~~a~~~lg~~~~~lg~~~~ 169 (372)
++++-|..+|.+|+.+.|++ ...+.++|.++..++++++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 66666666666666666654 2336789999999999999
Q ss_pred HHHHHHHHHccCCCcHHH----------HHHHHHHHHHHHHHHHhhhhhHH
Q 017383 170 SIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL 210 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~~~~~~~~~~~ 210 (372)
|+..|+++|.+.|.+... .++++.|...|.+++..++....
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999876 37888899999999988886643
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=1.6e-10 Score=106.48 Aligned_cols=115 Identities=25% Similarity=0.392 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160 (372)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~ 160 (372)
.++.-+..+|..++..|+|.+|+..|..|++.+|+ ..+++.||.+|+.+|+..-|+.+++++|++.|++..+...+|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 35666889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCcH---HHHHHHHHHHH
Q 017383 161 RKELGKLKESIEDSEFALRLEPQNQ---EIKKQLAEVKS 196 (372)
Q Consensus 161 ~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~a~~ 196 (372)
+...|.+++|..+|.++|..+|++. +++..+..+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence 9999999999999999999999653 44444444443
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.7e-10 Score=112.60 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=106.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++.+|.-+|+.++..+|.+.+ +|..+|.+....++-..||..+++|++++|+ ..++..||.+|...|.-.+|..
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~hae--AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAE--AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHH--HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 678999999999999999999544 4779999999999999999999999999998 7777777777777766666666
Q ss_pred HHHHHHhcC-----------------------------------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383 139 DCTEALNLD-----------------------------------------D--RYIKAYSRRATARKELGKLKESIEDSE 175 (372)
Q Consensus 139 ~~~~Al~l~-----------------------------------------p--~~~~a~~~lg~~~~~lg~~~~A~~~~~ 175 (372)
++..-|... | .+++++..||.+|...|+|+.|+++|+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 555544322 2 235556667777777777777777777
Q ss_pred HHHccCCCcHHHHHHH----------HHHHHHHHHHHHhhh
Q 017383 176 FALRLEPQNQEIKKQL----------AEVKSLYEKEVFQKA 206 (372)
Q Consensus 176 ~al~l~P~~~~~~~~l----------~~a~~~~~~~~~~~~ 206 (372)
.||..+|+|...|.+| .+|...|.+++...|
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 7777777776666444 345566666666554
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=2.4e-10 Score=101.30 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=97.2
Q ss_pred HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 017383 96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESI 171 (372)
Q Consensus 96 ~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~-~~lg~--~~~A~ 171 (372)
..++.++++..++++++.+|+ ...|..+|.+|..+|++++|+..|++|++++|+++.++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 367889999999999999998 999999999999999999999999999999999999999999975 77788 59999
Q ss_pred HHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 172 EDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 172 ~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
..++++++++|++..++ +++.+|...+++.+...+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999998885 445555555655555444
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=4.8e-10 Score=100.19 Aligned_cols=138 Identities=18% Similarity=0.155 Sum_probs=124.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|+-+.++....+++...|.+... +..+|...+..|+|..|+..++++..++|+ +.+|..+|.+|.+.|++++|.
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar 154 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEAR 154 (257)
T ss_pred HhcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHH
Confidence 46788888888888888888774444 557899999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
..|.+|+++.|+.+.++.|+|..+.-.|+++.|...+..+....+.+..+..++.-+....
T Consensus 155 ~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 155 RAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999888888888777665543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=106.62 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--C--HHHHHHHHHHHH
Q 017383 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T--AVAYANRAMAYL 128 (372)
Q Consensus 54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--~--~~~~~~la~~~~ 128 (372)
+++..| ..++.+-|+.+|.+.|.+.-.+++. +.++|.||+-.++|+-++.+|++|+.... . +++|+|+|.+..
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 334444 5567777888888888877665555 55888888888888888888888887653 3 788888888888
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
..|++.-|..+|+-|+.-|+++..++.++|.+-...|+.++|...+..|-.+.|+..+..
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 888888888888888888888888888888888888888888888888888888765543
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=1.8e-10 Score=96.48 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=83.3
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|++++|...|+-....+|. .+..|+++|.++...|+|++||.+|.+++.++|+ +.++.+.|.|++.+|+.+.|+
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 5889999999999999999999 4555889999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 017383 138 DDCTEALNLDDR 149 (372)
Q Consensus 138 ~~~~~Al~l~p~ 149 (372)
..|+.|+.....
T Consensus 124 ~aF~~Ai~~~~~ 135 (157)
T PRK15363 124 KALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHhcc
Confidence 999999998633
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.19 E-value=4.9e-10 Score=114.14 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=118.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|++++|...+.++++.+|.+..+ |+.+|.+|-.+|+.++|+.++-.|-.++|+ ...|..+|.....+|++.+|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 67899999999999999999997666 779999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
-+|.+||+++|.+.+..++++.+|.++|++..|...|.+++.+.|
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-10 Score=109.11 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=118.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------HHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMA 126 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~~la~~ 126 (372)
..|++++|...--..+++++.+.++ ++.+|.+++..++.+.|+.+|+++|.++|. ...+...|.-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 6799999999999999999985555 778999999999999999999999999997 2456678999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
.++.|+|.+|.++|+.||.++|++ +..|.++|.++..+|+..+|+.+.+.++.++|....++...+.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 999999999999999999999987 66799999999999999999999999999999876664333333
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=6.7e-10 Score=117.82 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=131.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYA 121 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~ 121 (372)
..|++++|+..|++++..+|.... ......++..+...|++++|+..+++++...|. ..++.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 789999999999999988876521 233457777889999999999999999998762 35678
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH----------HHHH
Q 017383 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQL 191 (372)
Q Consensus 122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----------~~~l 191 (372)
.+|.++...|++++|+..+++++...|.+..+++.+|.++...|++++|+..+++++.++|++..+ .+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 899999999999999999999999999999999999999999999999999999999999999655 3567
Q ss_pred HHHHHHHHHHHHhhhhhHHHH
Q 017383 192 AEVKSLYEKEVFQKASKTLEK 212 (372)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~ 212 (372)
.+|...+++.+...|......
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 788888888888877776543
No 73
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=4.7e-10 Score=112.09 Aligned_cols=186 Identities=18% Similarity=0.155 Sum_probs=144.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcC--CCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHH
Q 017383 11 DFQGFLNDLQDWDLSLNEKDKKMKHKA--SSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSE 87 (372)
Q Consensus 11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~ 87 (372)
+.-..+..++.|..-|-.+...-.... ...+ ..+.+.+....| .+||+-.--.+|++++++. +...+.+.
T Consensus 416 sAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~------q~lek~~d~~lyc~LGDv~~d~s~yEkawEls-n~~sarA~ 488 (777)
T KOG1128|consen 416 SALVIFERLEMWDPVILCYLLLGQHGKAEEINR------QELEKDPDPRLYCLLGDVLHDPSLYEKAWELS-NYISARAQ 488 (777)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcccchHHHHHH------HHhcCCCcchhHHHhhhhccChHHHHHHHHHh-hhhhHHHH
Confidence 344667788889888774432211000 0000 011112223345 6788888889999999987 44455566
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~ 166 (372)
+.+|...+..++|+++..+++.+++++|- ...|+++|.|.++++++..|..+|.+++.++|++..+|.+++.+|..+|+
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 77888888999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHH
Q 017383 167 LKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVF 203 (372)
Q Consensus 167 ~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~ 203 (372)
-.+|...+.+|++.+-++..+| +..+++...|.+.+.
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999999999998877765 556666666665443
No 74
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2e-10 Score=101.00 Aligned_cols=99 Identities=39% Similarity=0.599 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
.+.-++.-|+.|+...+|..||.+|.++|.++|. +..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 017383 162 KELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~ 181 (372)
.....|++|+..++++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997653
No 75
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=111.70 Aligned_cols=117 Identities=38% Similarity=0.596 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK 162 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~ 162 (372)
+....+.|+.++..++|+.|+..|.+||+++|+ +..+.+|+.++++.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 344668899999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
.++.+.+|+.+|++...+.|+++.+...+.++.....+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776655
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.5e-09 Score=97.79 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=116.5
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc---CHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEA 136 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g---~~~eA 136 (372)
....+.-+.-++..|..+|++.+. |..+|.+|+..|++..|...|.+|+.+.|+ +..+..+|.+++... ...++
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 345677788889999999996666 669999999999999999999999999998 999999999888775 46789
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
...+.+++.+||++..+.+.+|..++..|+|.+|...++..+.+.|.+......++..
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886655444443
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.12 E-value=1.8e-10 Score=87.42 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=59.5
Q ss_pred hhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017383 97 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED 173 (372)
Q Consensus 97 ~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~ 173 (372)
+|+|+.|+..|+++++.+|. ...++.+|.||+.+|+|++|+..+++ +..++.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57778888888888887772 55666778888888888888888877 777777777777778888888888888877
Q ss_pred HHHH
Q 017383 174 SEFA 177 (372)
Q Consensus 174 ~~~a 177 (372)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=2e-09 Score=103.59 Aligned_cols=138 Identities=20% Similarity=0.140 Sum_probs=124.3
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|+++.|+..+...++..|+++.. +-..|.+++..++..+|++.+++++.++|+ ..+..++|.+|++.|++.+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~--~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYY--LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 46789999999999999999985555 558899999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
..+...+.-+|+++..|..||.+|..+|+..+|...+-..+.+..+-..+...+..+...+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988888777776666665544
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=3.8e-10 Score=81.12 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
.+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666666666666666666666666666666653
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.5e-10 Score=106.04 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=122.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
.++++++|+++|..+++.+|.+.++.+ .+|..||-.++.+-|+.+|++.|.+--. +.++.|+|.|.+.-++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 678999999999999999999888866 7788899999999999999999998866 9999999999999999999999
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 139 DCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 139 ~~~~Al~l~p---~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
.|++|+.... .-++.||++|.+....|++..|..+|+-+|..+|++.++..+|+...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 9999998753 34788999999999999999999999999999999999988776543
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.08 E-value=1.4e-09 Score=89.71 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..+++++..+|.++.+ +..+|.+++..|++++|+.+|++++..+|. ...++++|.+|...|++++|+.
T Consensus 29 ~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 29 QQGRYDEALKLFQLLAAYDPYNSRY--WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred HcccHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 7799999999999999999985555 679999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHH
Q 017383 139 DCTEALNLDDRYIKAY 154 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~ 154 (372)
.++++++++|++....
T Consensus 107 ~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 107 ALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHhccccchHH
Confidence 9999999999886643
No 82
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.08 E-value=1.7e-10 Score=107.70 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|+.++|+..|+++++.+|++..+ ...++..+...|+++++...+.......|. +..+..+|.+|+.+|++++|+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~--~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDA--RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHH--HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 6799999999999999999996666 558899999999999988888887777665 7778899999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
++++++..+|+++..+..+|.++...|+.++|...+++++..
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999988754
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2e-09 Score=110.56 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=115.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchH-----------------------------------HHHHHHHHHHHHhhcHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDA-----------------------------------TSEKELGNECFKQKKFKEAI 104 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a-----------------------------------~~~~~~g~~~~~~g~~~~Ai 104 (372)
.+|+.+.|+..|.+++.++|....+ .++..+++.||-.|+|..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 6777777777777777777754221 24567899999999999999
Q ss_pred HHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 105 DCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 105 ~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
..+..++...-+ +..++.+|.+|..+|+|++|..+|..+++.++++ .-+++.+|..+...|+++.|+.+|+++++
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 999999987644 7789999999999999999999999999999988 88899999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHH
Q 017383 180 LEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 180 l~P~~~~~~~~l~~a~~ 196 (372)
..|++.+....|+-...
T Consensus 371 ~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYA 387 (1018)
T ss_pred hCcchHHHHHHHHhHHH
Confidence 99999987654444443
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6.6e-10 Score=113.95 Aligned_cols=139 Identities=21% Similarity=0.193 Sum_probs=123.3
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
.+.+++|+..|.++|+.+|. ..++-+.+|.++...|++.+|+..|.++.+.-.+ ..+|.|+|.||+.+|+|..|++.
T Consensus 625 kk~~~KAlq~y~kvL~~dpk--N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK--NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc--hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999 4555779999999999999999999999887664 89999999999999999999999
Q ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383 140 CTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (372)
Q Consensus 140 ~~~Al~l~--p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~ 201 (372)
|+.+++.. .++...+..||.+++..|.+.+|...+..|+.+.|.++.+..+++.+...+...
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 99999864 467899999999999999999999999999999999998877776666555443
No 85
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=1.2e-09 Score=78.55 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~ 151 (372)
+.+|..++..|+|++|+.+|+++++.+|+ ..+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36799999999999999999999999999 99999999999999999999999999999999874
No 86
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=4.5e-09 Score=88.45 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
.....+..|.-++..|+|++|...|+-..-.+|. ...+..+|.|+..+++|++|+..|..|..++++++...+..|.|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 3445778899999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 162 KELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
..+|+.+.|..+|+.++. .|.+....
T Consensus 116 l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred HHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 999999999999999998 46654443
No 87
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.05 E-value=4.3e-09 Score=88.44 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=100.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~ 134 (372)
..++...+...++..+...|+.+. ..+...+|.+++..|+|++|+..|+.++...|+ ..+..++|.+++..|+|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 456777777889999998888743 456778999999999999999999999998765 667899999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
+|+..++. +.-.+-.+.++..+|.++...|++++|+..|+++|
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999966 33444557788899999999999999999999885
No 88
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.05 E-value=5.3e-09 Score=96.44 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHH-HHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHH
Q 017383 83 DATSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAY 154 (372)
Q Consensus 83 ~a~~~~~~g~~~-~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~ 154 (372)
.....+..|..+ ++.|+|++|+..|+..+...|+ +.+++.+|.+|+..|+|++|+..|.+++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 334466777776 6789999999999999999998 6899999999999999999999999999998874 8889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
+.+|.++..+|++++|...|+++++..|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999987543
No 89
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=4.3e-10 Score=85.32 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
.|+|+.|+..|+++++.+|.+++...++.+|.+|+..|+|++|+..+++ +..++. ....+.+|.|++.+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5899999999999999998644555677899999999999999999999 778877 77778889999999999999999
Q ss_pred HHHH
Q 017383 140 CTEA 143 (372)
Q Consensus 140 ~~~A 143 (372)
+++|
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=2.9e-09 Score=107.02 Aligned_cols=125 Identities=22% Similarity=0.156 Sum_probs=114.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..+.-++|..++.++-.++|. .++.++..|.++...|.+.+|..+|..|+.++|+ ......+|.++...|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred hcCCchHHHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 446677788899999999877 6667889999999999999999999999999999 8889999999999998888887
Q ss_pred --HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 139 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 139 --~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.+..|+++||.+.++|+.+|.++..+|+.+.|.++|..|+.+++.+|-
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999999988763
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=3.4e-09 Score=94.77 Aligned_cols=116 Identities=17% Similarity=0.095 Sum_probs=108.8
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..|+|.+|+..+.++..++|++..+ |..+|.+|.+.|++++|-..|.+++++.|+ +.+..|+|+.|+-.|+++.|.
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 36799999999999999999995555 779999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~ 176 (372)
..+..+....+.+..+..+++.+....|++++|.....+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999999999999999999999877654
No 92
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=3.5e-09 Score=106.62 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=106.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHcc--CCC-HHHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYL 128 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~--------g~~~~Ai~~y~~al~~--~p~-~~~~~~la~~~~ 128 (372)
..+++..|+.+|+++++++|++..+++ .++.++... .+...+.....+++.+ +|. +.+|..+|..+.
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~ 431 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL 431 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence 445688999999999999999766655 556555432 3466778888887775 554 888999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
..|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++..
T Consensus 432 ~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999 58899999999999999999999999999999998754
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.02 E-value=7.5e-09 Score=109.23 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=109.6
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..|+++.|+..|+++++.+|.++-+.. .+..++...|++++|+.++++++.-.|. ...+..+|.+|..+|+|++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4678888888889998888888532322 6677777788888888888888822222 555566677888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH---------HHHHHHHHHHHHHHHhhhhh
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK---------KQLAEVKSLYEKEVFQKASK 208 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~---------~~l~~a~~~~~~~~~~~~~~ 208 (372)
..|+++++.+|+++.++..++.++...|+.++|+..+++++..+|.+.... ....++...+++.+...|..
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 888888888888888888888888888888888888888888888765431 12223555666666665544
Q ss_pred H
Q 017383 209 T 209 (372)
Q Consensus 209 ~ 209 (372)
.
T Consensus 203 ~ 203 (822)
T PRK14574 203 E 203 (822)
T ss_pred H
Confidence 3
No 94
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.4e-09 Score=92.41 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHcc--------CCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~--------~p~-----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
++...||-+|+.|+|.+|..+|..|+.. .|. ..++.|.+.|++..|+|-++++.|...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999864 232 357899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
+|.+.+||+++|.++...=+.++|..+|.++|.++|.-..+
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999986554
No 95
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=2.6e-09 Score=98.59 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=113.5
Q ss_pred hhHhhhHHHHHHHHhhHHHHHHHHHHH-----H------HHhhhcC-------------------CCCCcccccc-cccc
Q 017383 3 KHNRDQALDFQGFLNDLQDWDLSLNEK-----D------KKMKHKA-------------------SSKDNLVSSS-LKSA 51 (372)
Q Consensus 3 ~~~~~n~~~l~~~~~~l~~~e~~ik~~-----~------~~l~~~~-------------------~~~~~~~~~~-~~~~ 51 (372)
..+++=..+|++|-.++++-.++|++- . ..++... ++........ ....
T Consensus 19 ~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~~S 98 (536)
T KOG4648|consen 19 REYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKKAS 98 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHhhH
Confidence 356777899999999999999988843 0 0111100 0000000000 0000
Q ss_pred C-CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHH
Q 017383 52 K-KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128 (372)
Q Consensus 52 ~-~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~ 128 (372)
. +.-|+.| .+|.|++|+++|.+++..+|.++-. +.+++.+|++.+.|..|...++.|+.++.. ..+|..||.+..
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0 3456665 9999999999999999999986665 559999999999999999999999999988 999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHH
Q 017383 129 KLRRFQEAEDDCTEALNLDDRYIK 152 (372)
Q Consensus 129 ~~g~~~eA~~~~~~Al~l~p~~~~ 152 (372)
.+|...+|.++|+.+|+|.|++..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHH
Confidence 999999999999999999998744
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.1e-08 Score=89.20 Aligned_cols=135 Identities=19% Similarity=0.075 Sum_probs=119.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
+.|+.+-|..++...-...|..... ....|..+-..|.|++|+++|+..++-||. ..++-..-.+...+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 6688888999999988777885555 557799999999999999999999999998 6677666667778899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
.+..-++..+.+.++|+.++.+|...|+|+.|.-++++++-+.|.++-...+|+++.-
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877777644
No 97
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.4e-09 Score=98.39 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=94.3
Q ss_pred CCCCCchhhHHHHHhhhhcCCCC-------------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEEST-------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 124 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~-------------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la 124 (372)
|..|+|..|...|.+++..-+.. ....++.+++.++.++++|..|+.+.+++|.++|+ ..+++.+|
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG 298 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRG 298 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 58999999999999988743211 11235789999999999999999999999999998 99999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383 125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169 (372)
Q Consensus 125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~ 169 (372)
.+++.+|+|+.|+.+|++|++++|+|-.+...+..+.....++.+
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887777766655544443
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.9e-08 Score=88.37 Aligned_cols=127 Identities=20% Similarity=0.096 Sum_probs=113.8
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|.+++|+++|+..|..+|.+.-. ++..-.+.-.+|+--+||+....-++..++ ..+|..++.+|+..|+|++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 6699999999999999999985444 545555677888888999999999999998 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCcHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
|+++.+-+.|.++-.+.++|.+++-+| ++.-|..+|.++++++|.+..++
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 999999999999999999999999887 67889999999999999665554
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.96 E-value=1.4e-08 Score=107.19 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=116.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+.++++++ +|.+.....+..+|..+..+|+|++|++.|+++++.+|+ +.++..++.+|...+++++|+.
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 5599999999999999 555556666667788999999999999999999999999 8888899999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~ 197 (372)
.+++++..+|.+... ..++.++...++..+|+..|++++.++|++.++...+-.+...
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999996554 5556666667888789999999999999999987666555443
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1e-08 Score=98.66 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=97.1
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHH----ccCCC-HHHHHHHHHHHHHhcCH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al----~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
+..|++++|+..+++++..+|.+..+ +.. +..++..|++..+...+.+++ ..+|. ..++..+|.++..+|++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 46789999999999999999986544 333 555655555555555555544 34454 66777889999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
++|+..+++++.++|++..+++.+|.++...|++++|+..+++++...|.+
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 999999999999999999999999999999999999999999999888753
No 101
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=1.9e-08 Score=97.41 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=109.9
Q ss_pred CCCchhhHHHHHhhh---hcCCCCchHHHHHHHHHHHHH---------hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHH
Q 017383 61 YSRNYDPVSHISSSL---MNEESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPT-AVAYANRAMAY 127 (372)
Q Consensus 61 ~g~~~~A~~~~~~al---~~~p~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~ 127 (372)
..+...|+.+|.+++ .++|....++ ..++.+++. ..+-.+|.+..++|++++|. +.++..+|.++
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~--~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECY--CLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 346778999999999 9999866554 466777654 34567899999999999998 99999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
...++++.|+..|++|+.++|+++.+|+.+|.++...|+.++|...++++++++|.-.
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 9999999999999999999999999999999999999999999999999999999753
No 102
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.92 E-value=3.4e-08 Score=79.88 Aligned_cols=94 Identities=28% Similarity=0.121 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRA 158 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~---~~~a~~~lg 158 (372)
+++++|.++-..|+.++|+.+|+++++.... ..++.++|.++..+|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4679999999999999999999999997544 778999999999999999999999999999888 788888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHc
Q 017383 159 TARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~ 179 (372)
.++..+|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988774
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.2e-08 Score=94.32 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=119.0
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
.|..||+++|.+.|.++|..+....++ ++++|..+-.+|+.++|+.||-+.-.+--+ +.+++.++.+|..+.+..+|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 478999999999999999988764445 889999999999999999999998887766 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
++++.++..+-|+++..+..+|.+|-+-|+-..|..++-...+..|.|.+...
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 99999999999999999999999999999999999999999999998877643
No 104
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=4.6e-08 Score=87.02 Aligned_cols=136 Identities=19% Similarity=0.192 Sum_probs=108.1
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 132 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~- 132 (372)
+..|+|.+|+..|++++...|..+.+ .+.+.+|.++++.|+|.+|+..|++.+...|+ ..+++.+|.+++.+..
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 46799999999999999988876543 45779999999999999999999999999998 7889999999877643
Q ss_pred ----------HHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 133 ----------FQEAEDDCTEALNLDDRYIK-----------------AYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 133 ----------~~eA~~~~~~Al~l~p~~~~-----------------a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
..+|+..|+..+...|+... --+..|..|...|.|..|+..|+.+++..|+.+
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 45899999999999998721 124478888999999999999999999999987
Q ss_pred HHHHHHHHH
Q 017383 186 EIKKQLAEV 194 (372)
Q Consensus 186 ~~~~~l~~a 194 (372)
....-+...
T Consensus 176 ~~~~al~~l 184 (203)
T PF13525_consen 176 AAEEALARL 184 (203)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 664433333
No 105
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=1.2e-08 Score=101.60 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=103.9
Q ss_pred CCCCchhhHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYAN 122 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~ 122 (372)
..|+|+.|+..+..+++. .|. -+.....+|..|..+++|.+|+..|++|+.+. |. +.++.|
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 679999999999999997 222 23345679999999999999999999999863 33 888999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 123 RAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 123 la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
||.+|.+.|+|++|..+|++|+.+. |.-...+.+++.++..++++++|+.++++++++.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999873 3446678899999999999999999999999764
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=1.5e-08 Score=87.68 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=87.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC-----
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----- 132 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~----- 132 (372)
..|++++|+.+|++++...|+... +..+..+|.++...|+|++|+.+|.+++...|+ ..++.++|.+|..+|+
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence 679999999999999998766443 567889999999999999999999999999998 8889999999999888
Q ss_pred ---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383 133 ---------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (372)
Q Consensus 133 ---------~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~ 166 (372)
+.+|+.++++++.++|++ +...+..+...|+
T Consensus 127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 678888888888888887 4444555554443
No 107
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.91 E-value=2.2e-08 Score=80.44 Aligned_cols=98 Identities=26% Similarity=0.271 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATAR 161 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~ 161 (372)
+-..|..+...|+.+.|++.|.++|.+.|. +.+|+|++.++.-.|+.++|+.++++|+++.... ..+|..+|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445688888999999999999999999998 9999999999999999999999999999997654 56789999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCc
Q 017383 162 KELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
..+|+-+.|..+|+.+-++....
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999887654
No 108
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=87.42 Aligned_cols=95 Identities=25% Similarity=0.270 Sum_probs=87.8
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
.|..|+|++|...|..+|.+.|... ....|.++|.++++++.++.||....++|+++|. ..++..||.+|-++.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4799999999999999999998865 3556889999999999999999999999999998 88899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH
Q 017383 134 QEAEDDCTEALNLDDRYIK 152 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~ 152 (372)
++|+.+|.+.+.++|....
T Consensus 185 eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHHHHhCcchHH
Confidence 9999999999999998754
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=1.4e-08 Score=81.26 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~ 134 (372)
..|++++|+..|.+++...|++.. ..+++.+|.+++..|+|++|+.+|.+++..+|+ ..++..+|.++..+|+++
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 679999999999999999887532 445778999999999999999999999999887 678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHH
Q 017383 135 EAEDDCTEALNLDDRYIKAY 154 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~ 154 (372)
+|+..+.+++...|++..+.
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHHCcCChhHH
Confidence 99999999999999986643
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=8.8e-08 Score=87.54 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=109.9
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 132 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~- 132 (372)
+..|+|++|+..|++++...|..+.+ .+.+.+|.++++.++|++|+..|++.++.+|+ ..+++.+|.++..++.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 36799999999999999999987544 24578999999999999999999999999987 7889999998766541
Q ss_pred -----------------HHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 133 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 133 -----------------~~eA~~~~~~Al~l~p~~~~---a--------------~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
..+|+..|++.++..|+..- + -+..|..|...|.|..|+.-|+.++
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 35788999999999998621 1 2346777889999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHH
Q 017383 179 RLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 179 ~l~P~~~~~~~~l~~a~~ 196 (372)
+-.|+.+....-+.....
T Consensus 203 ~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 203 RDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHCCCCchHHHHHHHHHH
Confidence 999987665444433333
No 111
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.87 E-value=6.1e-08 Score=79.92 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR 156 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~ 156 (372)
+..++..|...+..|+|.+|+..|+......|. ..+...+|.+|++.++|++|+..+++-|+|+|.+ .-+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 445789999999999999999999999999986 7889999999999999999999999999999988 467999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHccCCCcHHH
Q 017383 157 RATARKELGK---------------LKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 157 lg~~~~~lg~---------------~~~A~~~~~~al~l~P~~~~~ 187 (372)
+|.++..... ...|...|++++...|++..+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999887 888888898888888887544
No 112
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=4.3e-08 Score=88.75 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 159 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~ 159 (372)
.++.|..+++.|+|..|...|..-+...|+ +.+++.||.+++.+|+|++|...|..+++-.|+. +++++-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 778999999999999999999999999998 8999999999999999999999999999998876 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 160 ARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 160 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
+...+|+.++|...|+++++-.|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987654
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.86 E-value=6.5e-08 Score=98.99 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
+...+...|+.++..|++++|+..+.++|.++|. ..+|+.+|.||..+|+.+++..+.-.|-.++|.+..-|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4556778899999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383 162 KELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~ 206 (372)
..+|++..|.-+|.+|++++|.+.+.. +.+..|..-+.+.+...|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997763 444455555555444444
No 114
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=96.72 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=114.7
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~ 140 (372)
.++.+|-.+...++.++--++. ++.+.|++.|..|+|++|.+.|..+|.-+.. ..+++|+|..+-.+|+.++|+.+|
T Consensus 470 k~~~~aqqyad~aln~dryn~~--a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAA--ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhcccccCHH--HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence 3667777777777777654333 4568899999999999999999999998877 999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 141 ~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
-+.-.+--+++.+++.++.+|..+.+...|++++-++..+-|+++.+...|.+.
T Consensus 548 ~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 548 LKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 998888888999999999999999999999999999999999999887655544
No 115
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=2.4e-08 Score=73.25 Aligned_cols=63 Identities=32% Similarity=0.463 Sum_probs=37.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.+|+..++|++|+.++++++.++|+++.+|+.+|.++..+|++.+|..+|++++.+.|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555566666666666666666666666666666666666666666666666666655544
No 116
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=5.3e-08 Score=89.43 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=118.1
Q ss_pred CCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHH
Q 017383 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAY 127 (372)
Q Consensus 55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~ 127 (372)
+|.-| ..|-++.|...|....+....-.. ++..+-++|....+|++||+..++...+.+. +..|..+|..+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 33345 567888888888887775533223 3668889999999999999999999998875 78889999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHH
Q 017383 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLYE 199 (372)
Q Consensus 128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~a~~~~~ 199 (372)
....+++.|+..+.+|++-+|+.+.+-..+|.++...|+|+.|++.++.+++.+|+. +++...|.++...++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999976 444455555544443
No 117
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=1.8e-07 Score=90.08 Aligned_cols=120 Identities=13% Similarity=-0.030 Sum_probs=98.4
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~ 140 (372)
+....+...+.......|. ....+..+|.++...|++++|+..++++++++|+ ..++..+|.++...|++++|+..+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 94 GMRDHVARVLPLWAPENPD--YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred cCchhHHHHHhccCcCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444443334444 3445668899999999999999999999999998 889999999999999999999999
Q ss_pred HHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 141 TEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 141 ~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
.+++...|.. ...|..+|.++...|++++|+..|++++...|.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 9999998743 245678999999999999999999999877773
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=6e-08 Score=97.30 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=115.8
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..++|.++..+++.+++++|- ....|+.+|.+..+.++++.|..+|.+++.++|+ ..+|+|++.+|.++++-.+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4679999999999999999998 4555889999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
..+.+|++-+-.+.+.|-|.-.+....|.++.|+..|.+.+.+.-+
T Consensus 574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999887543
No 119
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=3.2e-08 Score=72.62 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=64.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
+..+|+..++|+.|+.++++++.++|+ +.++..+|.|+..+|++.+|+.+|+++++..|++..+...++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 357899999999999999999999999 9999999999999999999999999999999999887665543
No 120
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=3.9e-07 Score=90.49 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=131.2
Q ss_pred HHHHHHHhhHHHHHH-----HHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCCCCchhhHHHHHhhhhcCCCCchH
Q 017383 10 LDFQGFLNDLQDWDL-----SLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDA 84 (372)
Q Consensus 10 ~~l~~~~~~l~~~e~-----~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~~A~~~~~~al~~~p~~~~a 84 (372)
.|..-|.+.++.||. .+|-.+..|++.+.-+..+.-++- +.+.+|+.++|..+...++..++. ..
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--------~L~~lg~~~ea~~~vr~glr~d~~--S~ 75 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGL--------TLNCLGKKEEAYELVRLGLRNDLK--SH 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccc--------hhhcccchHHHHHHHHHHhccCcc--cc
Confidence 344555566655554 456666666655422222221211 235889999999999999999887 45
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
.+|..+|.++...++|++||.||+.|+.++|+ ..+|..++....++|+|+.....-.+.+++.|..-..|...+.++..
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56889999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccC
Q 017383 164 LGKLKESIEDSEFALRLE 181 (372)
Q Consensus 164 lg~~~~A~~~~~~al~l~ 181 (372)
+|++..|....+.-....
T Consensus 156 ~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999988877776654
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.79 E-value=3e-08 Score=98.68 Aligned_cols=127 Identities=23% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCCCC-CCCCchhhHHHHHhhhhcCC-----CCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--------C-HH
Q 017383 55 SPSGN-SYSRNYDPVSHISSSLMNEE-----STP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------T-AV 118 (372)
Q Consensus 55 ~~~~y-~~g~~~~A~~~~~~al~~~p-----~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--------~-~~ 118 (372)
.|..| .+++|.+|+..|+++|.+-. .++ -+..+.++|..|++.|+|++|..++++|+++.. . +.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 34445 78999999999999997432 222 456789999999999999999999999998732 2 77
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
.+.+++.++..++++++|+..+++++++. +.-+..+.++|.+|...|+|++|...|++|+.+.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 88999999999999999999999999873 2447789999999999999999999999999875
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=4.1e-08 Score=101.14 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=109.8
Q ss_pred CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHH
Q 017383 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLK 129 (372)
Q Consensus 54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~ 129 (372)
-+|..| +.-|+..|..+|.+|+++|+.+..+ ....+..|....+++.|.....++-+.+|. ...|..+|..|+.
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 344444 3347778888888888888875444 447788888888888888887777777765 5566779999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
-+++..|+.+|+.|++.+|.+..+|..+|.+|...|+|..|+..|.++..++|.+.-.
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 9999999999999999999999999999999999999999999999999999987654
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=6.7e-08 Score=72.26 Aligned_cols=88 Identities=26% Similarity=0.434 Sum_probs=80.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..+.+++...|... ..+..+|.++...|++++|+.+|++++...|. ..++..+|.++...|++++|..
T Consensus 12 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 12 KLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence 56899999999999999998854 44779999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHhcCCC
Q 017383 139 DCTEALNLDDR 149 (372)
Q Consensus 139 ~~~~Al~l~p~ 149 (372)
.+.+++..+|.
T Consensus 90 ~~~~~~~~~~~ 100 (100)
T cd00189 90 AYEKALELDPN 100 (100)
T ss_pred HHHHHHccCCC
Confidence 99999998874
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=3.1e-07 Score=84.01 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS 155 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~ 155 (372)
.+..++..|..++..|+|++|+..|++++...|. ..+.+.+|.+|+++++|++|+..+++.++++|++ ..+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4445778999999999999999999999999998 5667999999999999999999999999999887 56799
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHccCCCcHH---HHHHHHHHHHH
Q 017383 156 RRATARKELG---------------K---LKESIEDSEFALRLEPQNQE---IKKQLAEVKSL 197 (372)
Q Consensus 156 ~lg~~~~~lg---------------~---~~~A~~~~~~al~l~P~~~~---~~~~l~~a~~~ 197 (372)
.+|.++..++ + ...|+..|++.++..|+..- +...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 9999876665 1 35788999999999998754 34444444443
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-07 Score=88.00 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=110.0
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|...++..|+.+-+++++.+|.+..+ +...|+.+...|+.++|+-.|+.|+.+.|. ...|-.+-.||+..|++.+|.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 68889999999999999999997777 457799999999999999999999999998 899999999999999877666
Q ss_pred HHHH------------------------------------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 138 DDCT------------------------------------EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 138 ~~~~------------------------------------~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
...+ +++.++|.+..+-..++..+..-|.++.++..+++.|...
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 5544 4445555666666666666666666666666666666666
Q ss_pred CCcHH---------HHHHHHHHHHHHHHHHHhhhhh
Q 017383 182 PQNQE---------IKKQLAEVKSLYEKEVFQKASK 208 (372)
Q Consensus 182 P~~~~---------~~~~l~~a~~~~~~~~~~~~~~ 208 (372)
|+..- +...++++...|..++..+|..
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 65421 1245555555555555555544
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=3.5e-08 Score=71.34 Aligned_cols=64 Identities=27% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191 (372)
Q Consensus 128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 191 (372)
+..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777777665555443
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=2.7e-07 Score=82.05 Aligned_cols=116 Identities=22% Similarity=0.207 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS 155 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~ 155 (372)
.+..++..|..++..|+|.+|+..|++.+...|. ..+.+.+|.++++.|+|.+|+..+++.+...|++ ..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 3455789999999999999999999999999987 8899999999999999999999999999999987 56899
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHH
Q 017383 156 RRATARKELG-----------KLKESIEDSEFALRLEPQNQEI---KKQLAEVKSLY 198 (372)
Q Consensus 156 ~lg~~~~~lg-----------~~~~A~~~~~~al~l~P~~~~~---~~~l~~a~~~~ 198 (372)
.+|.++..+. ...+|+..|+..+...|+..-+ ...+..+...+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 9999877653 3458999999999999988543 44455544433
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.75 E-value=9.8e-08 Score=88.05 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=86.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~ 134 (372)
..|+|++|+..|+..+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+ ..+++.+|.++..+|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 458999999999999999998743 345789999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHH
Q 017383 135 EAEDDCTEALNLDDRYIKA 153 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a 153 (372)
+|+..|+++++..|+...+
T Consensus 235 ~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHCcCCHHH
Confidence 9999999999999998654
No 129
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.74 E-value=9.6e-08 Score=81.28 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 017383 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-- 166 (372)
Q Consensus 100 ~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~----------~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~-- 166 (372)
|+.|.+.|+.....+|. ++.+++-|.+++.+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 56677777777777777 7777777777776644 5678888899999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383 167 ---------LKESIEDSEFALRLEPQNQEIKKQLAE 193 (372)
Q Consensus 167 ---------~~~A~~~~~~al~l~P~~~~~~~~l~~ 193 (372)
|++|..+|++|...+|+|...+..|+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 888999999999999998766655543
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1.4e-07 Score=99.09 Aligned_cols=121 Identities=14% Similarity=0.025 Sum_probs=105.7
Q ss_pred CCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H-----------------
Q 017383 57 SGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----------------- 117 (372)
Q Consensus 57 ~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~----------------- 117 (372)
..| ..+++++|+..+..+++..|+.... ++.+|.+++..+++.+|... .++.+.+. .
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence 345 7899999999999999999995555 66889999998888877666 55555443 3
Q ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 118 --VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 118 --~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
.+++.+|.||-++|++++|...|+++++++|+++.++.++|..|... ++++|+.++.+|+...-
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 99999999999998743
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.73 E-value=4.3e-08 Score=70.84 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=59.5
Q ss_pred HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
++..|+|++|+..|++++..+|+ ..+++.+|.||+..|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 46789999999999999999998 9999999999999999999999999999999998877766654
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=5.4e-08 Score=94.15 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=62.4
Q ss_pred cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383 77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (372)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~~g~~~eA~~~~~~Al~l~ 147 (372)
.+|+ .+..++++|.+|+..|+|++|+.+|+++|+++|+ . .+|+|+|.||..+|++++|+.++++|+++.
T Consensus 70 ~dP~--~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVK--TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4666 4555789999999999999999999999999999 5 469999999999999999999999999983
No 133
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-07 Score=88.26 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=117.1
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHH--------------------------------HHHHHHHHHHHhhcHHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDAT--------------------------------SEKELGNECFKQKKFKEAIDC 106 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~--------------------------------~~~~~g~~~~~~g~~~~Ai~~ 106 (372)
|..|++++|+..|+++.-++|.+..++ -|+--|..++..++|..|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 478999999999999999999764332 123345556677888888888
Q ss_pred HHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 107 y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
-.++|..+|+ ..+|...|..+..+|+.++|+-.|+.|..+.|.....|-.+-.+|...|++.+|....+.+++.-|.+.
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 8888888887 788888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred HHHHH------------HHHHHHHHHHHHHhhhh
Q 017383 186 EIKKQ------------LAEVKSLYEKEVFQKAS 207 (372)
Q Consensus 186 ~~~~~------------l~~a~~~~~~~~~~~~~ 207 (372)
..... .++|+..+++++..+|.
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 66433 35677777777666653
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=1.8e-07 Score=90.62 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=65.1
Q ss_pred cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 113 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 113 ~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a---~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
.+|+ +.+|+|+|.+|+.+|+|++|+.+|++||+++|++..+ |+++|.+|..+|++++|+.+|++|+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4787 9999999999999999999999999999999999865 999999999999999999999999998
No 135
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=1.2e-07 Score=94.09 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=124.3
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
.|..++|...+...+..|...|.+++..+ ..|..+...|+-++|..+...++..|+. ..+|..+|.++..-++|++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 36678888899999999999999888866 7799999999999999999999999988 88999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
+.+|+.|+.++|++...|..++....++|+|+.....-.+.+.+.|++...|-.+..+.
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877765544443
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=2.9e-07 Score=79.25 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=89.2
Q ss_pred HHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCC
Q 017383 93 ECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRATARKELGK 166 (372)
Q Consensus 93 ~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~~~~~lg~ 166 (372)
-+|-.+.|..+...+...+..++. +.+|+++|.++..+|++++|+..|.+++.+.|+. +.+|+++|.++..+|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 345556677777777666666554 8889999999999999999999999999997763 4689999999999999
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383 167 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (372)
Q Consensus 167 ~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (372)
+++|+..|++++.++|.+...+..+..+.....
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999888766666655443
No 137
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.2e-06 Score=80.81 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=104.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e 135 (372)
...++.+|++...+...+.+... -+..+..++..+....+++.|+..+.+|++.+|+ ..+-..+|.+++..|+|..
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 44678888888888877776543 3556778888888888999999999999999988 7777788999999999999
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 136 AEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 136 A~~~~~~Al~l~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
|++.++.+++.||.+ +.+.-.+..||..+|+.++.+..+.++....++..
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 999999999999887 56677788899999999999999999888887653
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=4.9e-07 Score=87.38 Aligned_cols=117 Identities=19% Similarity=0.116 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
-+.+..+..++..|++++|...++..+...|+ +..+..++.+++..|+..+|++.+.+++.++|+....+.++|.++..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34778899999999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383 164 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (372)
Q Consensus 164 lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~ 201 (372)
.|++.+|+..+...+.-+|+++..|..|.++....++.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999998777653
No 139
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.67 E-value=4.6e-08 Score=92.39 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=87.5
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcC----CCCchHHHHHHHHHHHHHhhc--------------------HHHHHHHH
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKK--------------------FKEAIDCY 107 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~----p~~~~a~~~~~~g~~~~~~g~--------------------~~~Ai~~y 107 (372)
.++|+.+ -.|.|++|+.++.+-|.+. ....++.+++++|++|...|+ ++.|+++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 5677777 6799999999988877533 333456677788888776543 55667777
Q ss_pred HHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 108 SRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 108 ~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
..-|++... ..+|-++|..|+-+|+|+.|+..-+.-+.+...+ -.++.++|.+|..+|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 766665432 4566777777777777777777776666654433 346677777777777777777777
Q ss_pred HHHHcc
Q 017383 175 EFALRL 180 (372)
Q Consensus 175 ~~al~l 180 (372)
...+.+
T Consensus 259 K~tl~L 264 (639)
T KOG1130|consen 259 KLTLNL 264 (639)
T ss_pred HHHHHH
Confidence 776644
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.66 E-value=6.8e-07 Score=90.22 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=104.5
Q ss_pred cCCCCchHHHHHHHHHHHHHhhc---HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHH
Q 017383 77 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL 144 (372)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g--------~~~eA~~~~~~Al 144 (372)
.-|.+..++.++..|..++..++ +..|+.+|++|++++|+ +.+|..++.+|.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566688888899988876544 88999999999999999 888988888886653 3455666677766
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhhH
Q 017383 145 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASKT 209 (372)
Q Consensus 145 ~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~~ 209 (372)
.+ +|..+.+|.-+|..+...|++++|...|++|+.++|+ ..++ ++.++|...|.+++..+|..+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 64 7788889999999999999999999999999999995 5554 455566667777776666544
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.66 E-value=3.9e-07 Score=88.39 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=97.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..+.++.|+..+++....+|. . ...++.++...++..+|+..+.+++...|. ..++...|..++..++++.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 346788999999998888864 3 335788888888899999999999988887 8888888999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
.+++|+.+.|+...+|+.|+.+|..+|+++.|+..++.+-
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999997776443
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=98.64 E-value=7.8e-07 Score=86.32 Aligned_cols=130 Identities=13% Similarity=0.014 Sum_probs=105.8
Q ss_pred cCCCCc---hHH--HHHHHHHHHHHhh---cHHHHHHHHHHHH---ccCCC-HHHHHHHHHHHHHh---------cCHHH
Q 017383 77 NEESTP---DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQE 135 (372)
Q Consensus 77 ~~p~~~---~a~--~~~~~g~~~~~~g---~~~~Ai~~y~~al---~~~p~-~~~~~~la~~~~~~---------g~~~e 135 (372)
..|.+. +++ .++.+|...+..+ ..+.|+.+|.+|+ +++|. +.+|..+|.||+.. ....+
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 335555 565 5667777765444 5678999999999 99999 99999999999876 23567
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhh
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK 205 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~ 205 (372)
|.....+|++++|.++.++..+|.++...|+++.|...|++|+.++|+...++ ++.+++...+++++...
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 88999999999999999999999999999999999999999999999998875 34555666666666655
Q ss_pred h
Q 017383 206 A 206 (372)
Q Consensus 206 ~ 206 (372)
|
T Consensus 403 P 403 (458)
T PRK11906 403 P 403 (458)
T ss_pred c
Confidence 5
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=98.64 E-value=2.3e-07 Score=78.24 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=82.6
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..|++++|...|+-....+|.+++. +..+|.++...++|++|+.+|..|..++++ +...+..|.||+.+|+...|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 58899999999999999999986554 779999999999999999999999999988 888999999999999999999
Q ss_pred HHHHHHHhcCCCCHH
Q 017383 138 DDCTEALNLDDRYIK 152 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~ 152 (372)
.+|+.++. .|.+..
T Consensus 126 ~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 126 QCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHh-CcchHH
Confidence 99999998 455433
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.62 E-value=5.4e-08 Score=72.44 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALS---PT-----AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
.++.++|.+|+..|+|++|+.+|++++.+. ++ +.++.++|.||..+|++++|+.++++|++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555431 11 34455555555555555555555555544
No 145
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.61 E-value=1.4e-06 Score=85.89 Aligned_cols=126 Identities=9% Similarity=0.002 Sum_probs=111.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHhcCHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~~la~~~~~~g~~~eA 136 (372)
+..|+++.|...+.++.+..|.. ...+...|.++...|+++.|..+|.++.+..|+. .+...++.+++..|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 47799999999999999988763 3335577999999999999999999999998883 4556679999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
...+++.++..|+++.++..++.++...|++++|...+.+.++....++.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999988654443
No 146
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.61 E-value=5.2e-07 Score=88.96 Aligned_cols=133 Identities=8% Similarity=-0.020 Sum_probs=102.1
Q ss_pred CCCchhhHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHH--HHHHHHHHHHhcCHHH
Q 017383 61 YSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQE 135 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~--~~~la~~~~~~g~~~e 135 (372)
.+..+++.+.+..+....|.. .....+..+|..+...|++++|+..++++++..|+ ... ..-+....+..++...
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 344455677777777777731 13444668899999999999999999999999988 321 2334445556688899
Q ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHccCCCcHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~--~a~~~lg~~~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~a 194 (372)
++..++++++.+|+++ ..+..+|.++...|++++|..+|+ .++...|++.... .+.++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~l 379 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADA 379 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHH
Confidence 9999999999999999 788899999999999999999999 6888889876543 44433
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=82.35 Aligned_cols=104 Identities=19% Similarity=0.119 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
.+..++.+|+.|-..|-+.-|.-.|.+++.+.|. +.+++-+|.-+..-|+|+.|.+.|...+++||.+--++.++|.++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 5677899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 162 KELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
+--|++.-|.++|.+-..-+|+++-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999875
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=1.6e-07 Score=69.95 Aligned_cols=64 Identities=30% Similarity=0.381 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
+.++.++|.+|..+|+|++|+.+|++++.+. |..+.+++++|.++..+|++++|+.+|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999762 223678999999999999999999999999976
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=1.2e-06 Score=82.18 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc--CHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g--~~~eA 136 (372)
..|++++|+..+.+. .+.+..+ ..-.+|.+.++++.|...+...-+.+.+ ..+...-|.+.+..| ++.+|
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~a--l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLA--LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHH--HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HcCCHHHHHHHHHcc-----CcccHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 445666666555443 1122222 3445556666666666666665555554 222222233333333 35666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 191 (372)
...|+......+..+..+..++.++..+|+|++|...+++++..+|++++..-++
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6666665555555556666666666666666666666666666666665554443
No 150
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.58 E-value=2.8e-07 Score=87.15 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=107.3
Q ss_pred CCCCCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC----CC---HHHH
Q 017383 53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---AVAY 120 (372)
Q Consensus 53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~----p~---~~~~ 120 (372)
..+|+.| -+|+|+.|+...+.-|.+..... .-.++.++|+++.-.|+|+.|+++|.+.+.+. .. +..+
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 6777776 88999999999888777654332 22356799999999999999999999987653 22 7788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 121 ANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
+.+|.+|.-+.++++||.++.+-+.+.. .-..+++.+|.++..+|..+.|+.+.++.+++.
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999777643 346789999999999999999999988887653
No 151
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.58 E-value=1e-06 Score=87.65 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=125.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~ 138 (372)
+..||...|...+..+++.+|++.+. +...-.+.+...+|+.|...|.++-...|...+|..-+.....+++.++|+.
T Consensus 595 w~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 36699999999999999999986555 3355566788889999999999999988888888888888889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH----------HHHHHHHHHHHHHHhhhhh
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVFQKASK 208 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~~~~~~~~~~ 208 (372)
.|+++|+..|++.+.|..+|.++..+++.+.|...|...+++.|+....|- .+-+|+..+.++...+|..
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999877653 4445555666665555544
Q ss_pred H
Q 017383 209 T 209 (372)
Q Consensus 209 ~ 209 (372)
.
T Consensus 753 ~ 753 (913)
T KOG0495|consen 753 A 753 (913)
T ss_pred c
Confidence 3
No 152
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.7e-07 Score=79.66 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=86.0
Q ss_pred CCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383 55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (372)
Q Consensus 55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~ 132 (372)
.|..| ..|-..-|.-.|.++|.+.|..+++ ++.+|..+...|+|+.|.+.|+-.+++||. --+..|||..++.-|+
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 45556 6788888999999999999996666 779999999999999999999999999999 8899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCH
Q 017383 133 FQEAEDDCTEALNLDDRYI 151 (372)
Q Consensus 133 ~~eA~~~~~~Al~l~p~~~ 151 (372)
|.-|.+++.+-.+-||+++
T Consensus 149 ~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHhhHHHHHHHHhcCCCCh
Confidence 9999999999999888874
No 153
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.53 E-value=3.3e-08 Score=91.48 Aligned_cols=97 Identities=31% Similarity=0.521 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
.+..+...+..|+++.||+.|..+|.++|. +.+|..+|.+++++++...|+.+|..|+.++|+.+..|-.+|.++..+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 445567788999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCC
Q 017383 166 KLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 166 ~~~~A~~~~~~al~l~P~ 183 (372)
++++|..+|+.+++++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999999865
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=2e-06 Score=90.72 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=102.3
Q ss_pred cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----
Q 017383 77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---- 151 (372)
Q Consensus 77 ~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~---- 151 (372)
.+|.+..+ +..+...+...+++++|+..++.+++..|+ ..+|+.+|.+++..+++.+|... .++.+.+.+.
T Consensus 26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 34554444 668999999999999999999999999999 99999999999999988776655 5555555444
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH---------HHHHHHHHHHHHHHh
Q 017383 152 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK---------QLAEVKSLYEKEVFQ 204 (372)
Q Consensus 152 ---------------~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~---------~l~~a~~~~~~~~~~ 204 (372)
.|++.+|.||..+|++++|...|+++|+++|+|+.+.. .+.+|..++.+++..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998843 555666666665544
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=4.5e-06 Score=82.02 Aligned_cols=128 Identities=10% Similarity=0.017 Sum_probs=104.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~~la~~~~~~g~~~eA~ 137 (372)
..||++.|.....++-+..+. +.. .+...+......|+++.|..+|.++.+.+|+. ......+..++..|++++|+
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~-p~l-~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ-PVV-NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 569999999777776554422 222 23344566699999999999999999999983 33345589999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
..++++++.+|+++.++..++.+|...|++++|+..+.+..+..+.++....
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999988877655433
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=1.2e-06 Score=88.54 Aligned_cols=115 Identities=23% Similarity=0.178 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l 164 (372)
.|...|..+...+.-++|..|..++-.++|- +..|+.+|.++...|++++|...|..|+.+||+++.....+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 3456788888899999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHH--HHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 165 GKLKESIE--DSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 165 g~~~~A~~--~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
|+-.-|.. .+..+++++|.|+++|..++++.+..+.
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 99888888 9999999999999999999988775553
No 157
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=5.7e-06 Score=81.33 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=102.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..|+++.|..+|.++.+.+|+...+. ....+..+...|++++|+..+++.++.+|+ ..++..++.+|...|+|++|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPV-EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 478999999999999999988754332 224488999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383 138 DDCTEALNL------------------------------------------DDRYIKAYSRRATARKELGKLKESIEDSE 175 (372)
Q Consensus 138 ~~~~~Al~l------------------------------------------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~ 175 (372)
..+.+..+. .|+++.++..+|.++...|+.++|...++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 655554432 23456677778889999999999999999
Q ss_pred HHHccCCC
Q 017383 176 FALRLEPQ 183 (372)
Q Consensus 176 ~al~l~P~ 183 (372)
++++..|+
T Consensus 288 ~~l~~~~~ 295 (398)
T PRK10747 288 DGLKRQYD 295 (398)
T ss_pred HHHhcCCC
Confidence 99995544
No 158
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=1.5e-06 Score=90.00 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=114.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
...+++.|......+-+..|-....+.|..+|..|...+++.+|+..|+.++..+|+ ..+|..+|.+|...|+|.-|++
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence 567888888886666666655444445667999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~ 192 (372)
.|++|..++|.+.-+.|..+.....+|+|.+|+..+...+............+.
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999877655444433333
No 159
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.43 E-value=4.8e-06 Score=83.00 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=116.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
...++++|..++.++....|. ...|+..++...-+++.++|+..+++||+..|. ..+|..+|.++..+++.+.|..
T Consensus 630 en~e~eraR~llakar~~sgT---eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT---ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc---chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 557899999999999887753 455778888889999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
.|...++.-|..+..|..++.+-...|....|...++++...+|++...|
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 99999999999999999999999999999999999999999999998765
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.40 E-value=1.3e-05 Score=80.81 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.++++.+|..|..+|++++|+.++++||...|..++.|+..|.++...|++.+|..+++.|..+++.+.-+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999987655
No 161
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=6.6e-06 Score=76.73 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~~la~~~~~~g~~~eA~~ 138 (372)
...||..|+.+++..+..+... +......+|.++|..|+|++|+..|+-+...+ +.+.++.++|.|++.+|.|.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 6789999999999988776432 22334467999999999999999999998855 348889999999999999888877
Q ss_pred HHHHH--------------HhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 139 DCTEA--------------LNLDDR------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 139 ~~~~A--------------l~l~p~------------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
...+| .+++.. ..+-...++.+++..-.|.+|++.|.++|.-+|+...
T Consensus 113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 65543 122211 1222344666677777788888888888887776543
No 162
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.37 E-value=2.6e-06 Score=68.67 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~ 134 (372)
..|+++.|++.|.++|.+.|..+.+ |++++..+.-+|+-++|+..+++++++.-. ..+|..+|..|..+|+-+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 5689999999999999999995555 889999999999999999999999998743 678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCH
Q 017383 135 EAEDDCTEALNLDDRYI 151 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~ 151 (372)
.|..+|+.|-++...++
T Consensus 133 ~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 133 AARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHhHHHHHHhCCHHH
Confidence 99999999988876653
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=3.7e-06 Score=76.32 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=87.7
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~ 134 (372)
..|+|..|...|..-++..|+.. .+.+++.+|.++|.+|+|++|...|..++.-.|+ +++++.+|.|...+|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 56899999999999999998864 3456889999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH
Q 017383 135 EAEDDCTEALNLDDRYIKAYSR 156 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~~~ 156 (372)
+|-..++++++..|....+..-
T Consensus 233 ~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999998776443
No 164
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.35 E-value=4.5e-06 Score=71.18 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=69.5
Q ss_pred chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh----------cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (372)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----------~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~ 132 (372)
|+.|.+.++.....+|.+ +..+.+.|.++..+. -+++|+.-|+.||.++|+ ..++.++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 567889999999999995 444668888776553 467899999999999999 9999999999988875
Q ss_pred -----------HHHHHHHHHHHHhcCCCCHH
Q 017383 133 -----------FQEAEDDCTEALNLDDRYIK 152 (372)
Q Consensus 133 -----------~~eA~~~~~~Al~l~p~~~~ 152 (372)
|++|..+|++|...+|++..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 88899999999999999854
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.35 E-value=3.2e-06 Score=79.13 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=101.7
Q ss_pred CCCCCCCCchhhHHHHHhhhhcCCCC----chHHHHHHHHHHHHHh-hcHHHHHHHHHHHHccCC---C----HHHHHHH
Q 017383 56 PSGNSYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSP---T----AVAYANR 123 (372)
Q Consensus 56 ~~~y~~g~~~~A~~~~~~al~~~p~~----~~a~~~~~~g~~~~~~-g~~~~Ai~~y~~al~~~p---~----~~~~~~l 123 (372)
+..|..+++++|+.+|++++.+.-.. .-+..+..+|.+|... |++++|+.+|++|+++.. . ..++.++
T Consensus 82 a~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 82 ANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33455568999999999998743221 2356788999999998 999999999999999742 1 6778899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 124 AMAYLKLRRFQEAEDDCTEALNLDDR------YI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 124 a~~~~~~g~~~eA~~~~~~Al~l~p~------~~-~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
|.++..+|+|++|+..|++.....-+ .+ ..++..+.++...|++..|...|++....+|....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999875321 12 34667888999999999999999999999996543
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.35 E-value=2.3e-06 Score=80.10 Aligned_cols=126 Identities=19% Similarity=0.146 Sum_probs=94.9
Q ss_pred CCCC-CCCCchhhHHHHHhhhhcCC----CCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC--HHHHHHH
Q 017383 56 PSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT--AVAYANR 123 (372)
Q Consensus 56 ~~~y-~~g~~~~A~~~~~~al~~~p----~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~--~~~~~~l 123 (372)
|+.| ..|++++|...|.++....- ....+..+...|.+| +.+++++|+.+|++|+.+. +. +.++.++
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445 56899999999999876432 122344455555555 5559999999999999974 22 7889999
Q ss_pred HHHHHHh-cCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 124 AMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 124 a~~~~~~-g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
|.+|... |++++|+..|++|+.+... ...++...|.++..+|+|++|+..|+++....-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999999987421 155678899999999999999999999987543
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=4.7e-06 Score=68.81 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=84.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR- 132 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~- 132 (372)
+..|+|.+|+..|+......|..+.+ .+...+|.+|++.|+|++|+..|++-|+++|. ..+++.+|++++.+..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 46799999999999999988876533 34679999999999999999999999999997 7889999999999987
Q ss_pred --------------HHHHHHHHHHHHhcCCCCHHH
Q 017383 133 --------------FQEAEDDCTEALNLDDRYIKA 153 (372)
Q Consensus 133 --------------~~eA~~~~~~Al~l~p~~~~a 153 (372)
...|..+|++.+...|+..-+
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999987543
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=2.7e-05 Score=65.30 Aligned_cols=90 Identities=18% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT 159 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~ 159 (372)
.+......+..+++..+...++..+.-+|+ ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+++|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 444555556789999999999999999887 5778889999999999999999999999987655 567889999
Q ss_pred HHHHcCCHHHHHHHHHH
Q 017383 160 ARKELGKLKESIEDSEF 176 (372)
Q Consensus 160 ~~~~lg~~~~A~~~~~~ 176 (372)
++...|++++|+..++.
T Consensus 94 ~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 99999999999999976
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=8.5e-06 Score=76.41 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=108.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
.+++++.|...+...-+.+++ ........+.+.+..| ++.+|.-.|+......+. +.+++.+|.|++.+|+|++|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 678999999999998888765 4433334445555555 699999999998877655 88899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~-~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~ 202 (372)
+..+..|+..+|+++.++.+++.+...+|+. +.+..++.+....+|+++-. ..+.+....|.+..
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~-~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV-KDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 66777888888899998754 44555555665543
No 170
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=5.5e-05 Score=68.14 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=109.7
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc----cCCC---HHHHHHHHHHHHHhc
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLR 131 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~~g 131 (372)
...|+|.-.+..+.++++.+|.. +......+|.+-+..||.+.|..+|++.-+ ++.- ..+..+.+.+|+..+
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 47789999999999999988442 444567999999999999999999995543 3321 567788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
+|.+|...+.+++..||.++.+..+.+.|+.-+|+...|++..+.++...|...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999999999764
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-05 Score=73.08 Aligned_cols=96 Identities=21% Similarity=0.125 Sum_probs=84.7
Q ss_pred hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 017383 98 KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---KLKESIED 173 (372)
Q Consensus 98 g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg---~~~~A~~~ 173 (372)
...+.-+.-.+.-|..+|+ +.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++... ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3467778888899999998 9999999999999999999999999999999999999999999887665 35689999
Q ss_pred HHHHHccCCCcHHHHHHHHH
Q 017383 174 SEFALRLEPQNQEIKKQLAE 193 (372)
Q Consensus 174 ~~~al~l~P~~~~~~~~l~~ 193 (372)
|++++.++|+|..+...|.-
T Consensus 216 l~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 216 LRQALALDPANIRALSLLAF 235 (287)
T ss_pred HHHHHhcCCccHHHHHHHHH
Confidence 99999999999988655543
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=1.4e-05 Score=64.73 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~ 134 (372)
..|+.++|+.+|++++....... ...++..+|..+...|++++|+..+++++...|+ ..+...+++++..+|+++
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 67999999999999999764432 2456779999999999999999999999998776 566678999999999999
Q ss_pred HHHHHHHHHHh
Q 017383 135 EAEDDCTEALN 145 (372)
Q Consensus 135 eA~~~~~~Al~ 145 (372)
+|+..+-.++.
T Consensus 93 eAl~~~l~~la 103 (120)
T PF12688_consen 93 EALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=1.4e-05 Score=79.00 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=100.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
..|+|++|.....+.+...|+..++ ++..-.++.+.++|++|+...+.-....-.....+..|.|+++++..++|+.+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 5689999999999999999986666 55667788999999999944333222121233447999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
++ .+++.+..+...+|.+++.+|+|++|+..|+..++-+-++.+.
T Consensus 102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99 6778888899999999999999999999999998877666544
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=7.2e-05 Score=64.14 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (372)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~-~~~~~~la~~~~~~g~~~eA~~~~ 140 (372)
|-+.......+.++..|. ..-.+.+|+.+...|+|.+|...|++++.- .-. +..+..++.+.+..+++..|...+
T Consensus 71 dP~R~~Rea~~~~~~ApT---vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPT---VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchh---HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344455555666666654 233568999999999999999999999973 333 888999999999999999999999
Q ss_pred HHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 141 TEALNLDDRY--IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 141 ~~Al~l~p~~--~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
+...+.+|.. +.....+|.++...|++..|...|+.++...|+..
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999998864 67788899999999999999999999999999853
No 175
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.5e-06 Score=72.57 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=79.8
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|.-..|..|+.+|.+++.++|..... +.+.+.++++..+|+.+.....++++++|+ ..+++.+|.+++....|.+|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 46678999999999999999985444 669999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcC
Q 017383 138 DDCTEALNLD 147 (372)
Q Consensus 138 ~~~~~Al~l~ 147 (372)
..+++|..+.
T Consensus 99 ~~Lqra~sl~ 108 (284)
T KOG4642|consen 99 KVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.14 E-value=8.9e-05 Score=74.75 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
..|+++.++..|-..|++++|+.+.++||+..|. ...|...|.+|-+.|++.+|..+++.|..+|..+-..-...+..+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3467889999999999999999999999999999 999999999999999999999999999999999988888889999
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 017383 162 KELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~ 181 (372)
.+.|++++|...+..-.+-+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCC
Confidence 99999999999987765554
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.12 E-value=0.00022 Score=64.40 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC--
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-- 132 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-- 132 (372)
..|++.+|+..|+......|..+.+ .+...++.++++.++|++|+...++-+.+.|+ ..+++.+|.+++..=+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 6689999999999999888776543 24568899999999999999999999999886 6778888888775532
Q ss_pred ------HHHHHHHHHHHHhcCCCCH-----H----------H--HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 133 ------FQEAEDDCTEALNLDDRYI-----K----------A--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 133 ------~~eA~~~~~~Al~l~p~~~-----~----------a--~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
..+|+..+...+...|+.. . + =+..|..|...|.+..|+.-++.+++--|+......
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 4568888899999888761 1 1 123677888899999999999999998887766665
Q ss_pred HHHHHHHHHH
Q 017383 190 QLAEVKSLYE 199 (372)
Q Consensus 190 ~l~~a~~~~~ 199 (372)
.|......|.
T Consensus 206 aL~~l~eaY~ 215 (254)
T COG4105 206 ALARLEEAYY 215 (254)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=5.8e-06 Score=50.95 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 179
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=9.1e-06 Score=53.42 Aligned_cols=42 Identities=33% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
.++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666654
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.06 E-value=3.9e-06 Score=51.91 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESI 171 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~ 171 (372)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888875
No 181
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.05 E-value=1e-05 Score=75.71 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=105.6
Q ss_pred CCCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----------HH
Q 017383 55 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AV 118 (372)
Q Consensus 55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------~~ 118 (372)
+|.++ .++.|+++++.|+++++....+. +..++..+|..|....||++|+-+..+|.++-.+ ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455 77899999999999998664443 3346778999999999999999999999987432 56
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
+++.++.++..+|+...|.++|++|.++. +.++....-+|.+|...|+.+.|..-|+.|...-
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 77889999999999999999999998874 3456667779999999999999999999998653
No 182
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.04 E-value=4.6e-06 Score=80.75 Aligned_cols=102 Identities=20% Similarity=0.118 Sum_probs=91.8
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+..++|+.|+..|.++++++|+.... +-+++..+.+.++|..|+..+.+||+++|. ..+|+.+|.+...++++.+|.
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 46789999999999999999985444 558889999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARK 162 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~ 162 (372)
.+|+....+.|+.+.+...+-.+-.
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999988766655444
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=6.4e-05 Score=74.38 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=94.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------------------------
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------------------------- 113 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------------------------- 113 (372)
|.++..++|+..+. . .++.+... ....|.++|++|+|++|+..|+..++-
T Consensus 90 Yrlnk~Dealk~~~-~--~~~~~~~l--l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-G--LDRLDDKL--LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-c--ccccchHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 57788888888888 2 23222223 557799999999999999999887543
Q ss_pred --CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCC--------HHHHHHHHHHHHHcCCHHHHH
Q 017383 114 --SPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRY--------IKAYSRRATARKELGKLKESI 171 (372)
Q Consensus 114 --~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------p~~--------~~a~~~lg~~~~~lg~~~~A~ 171 (372)
.|. ...++|.|.++...|+|.+|++.+++|+++. ..+ ......++.++..+|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 121 4678999999999999999999999995441 111 334667899999999999999
Q ss_pred HHHHHHHccCCCcH
Q 017383 172 EDSEFALRLEPQNQ 185 (372)
Q Consensus 172 ~~~~~al~l~P~~~ 185 (372)
..|...++.+|.+.
T Consensus 245 ~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 245 SIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcCCCc
Confidence 99999999998764
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.01 E-value=0.00036 Score=59.96 Aligned_cols=121 Identities=23% Similarity=0.305 Sum_probs=63.3
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHH-HHHHhhcHHHHHHHHHHHHccCC---C-HHHHHHHHHHHHHhcCHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~-~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~~la~~~~~~g~~~e 135 (372)
.+++..++..+..++...+....... ..+. +++..|+++.|+.+|.+++..+| . ...+..++..+...+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 34455555555555554444322222 2222 45555555555555555555444 1 4444444444555555555
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 136 AEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 136 A~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
|+..+.+++...+. ....+..++..+...|+++.|...+..++...|.
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 55555555555555 4555555555555555555555555555555554
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00017 Score=70.24 Aligned_cols=109 Identities=22% Similarity=0.119 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~ 168 (372)
.+-..+...++|+.|+..+++..+.+|.. ...++.+++..++..+|+..+.+++..+|.+...+...+..+...|+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 34445566789999999999999999873 3447889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383 169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (372)
Q Consensus 169 ~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (372)
.|+...+++..+.|++...|..|.++....+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988876544
No 186
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.00 E-value=0.00011 Score=77.51 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=95.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~~la~~~~~~g~~~eA 136 (372)
..|+.++|+..|++.+... -.++...+..+-..|...|.+++|..+|+...+ +.|+...|..+..+|.+.|++++|
T Consensus 403 ~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 6788999999999877654 234566677778888888899999888888765 345567788888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.+.+++. ...| +...|..+..++...|+++.|...+++.+.+.|++..
T Consensus 482 ~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 482 YAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 8887664 2233 3556778888888888888888888888888887643
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00025 Score=64.04 Aligned_cols=115 Identities=24% Similarity=0.302 Sum_probs=70.8
Q ss_pred HHHHHHHHHH----hhcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 87 EKELGNECFK----QKKFKEAIDCYSRSIA-LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 87 ~~~~g~~~~~----~g~~~~Ai~~y~~al~-~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
+..+|..|.+ .+++.+|.-+|+..-+ ..|.+..+...+.|++.+|+|++|...++.||..+++++.++.++-.+-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3345544443 3456677777777666 3344677777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHHHHHHH
Q 017383 162 KELGKLKESIEDSEFAL-RLEPQNQEIKKQLAEVKSLYEKEV 202 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al-~l~P~~~~~~~~l~~a~~~~~~~~ 202 (372)
..+|.-.++...+-.-+ ...|.++ ...++.+....|++..
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h~-~vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEHP-FVKHLNEKEAEFDRLV 292 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHH
Confidence 77776655554443333 3344443 3345555555555443
No 188
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.2e-05 Score=49.46 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 151 ~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.98 E-value=0.00027 Score=60.74 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=112.1
Q ss_pred CCCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~e 135 (372)
+..|+++.|+..|.+++..+|. ......+...+..+...++++.|+..+.+++...+. ...+..++.++...+++..
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 3789999999999999887763 335555667777788999999999999999999987 7889999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999998888889998888888899999999999999997
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=3.3e-05 Score=75.45 Aligned_cols=104 Identities=29% Similarity=0.257 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRA 158 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g---~~~eA~~~~~~Al~l~p~~~~a~~~lg 158 (372)
.+..++..|+-.+..+.+..|+..|.+++...|. ...|.|++.++++.+ +.-.|+.+|..|++++|...+++++++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3445678888888899999999999999999998 889999999998875 566799999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 159 TARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.++..++++.+|+.+...+....|.+..
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999888888886544
No 191
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=7.4e-05 Score=68.46 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=88.6
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
..+|.+|+.++..-.+.+|.+..+ +..+|.||+...+|..|..||++.-.+.|. ....+.-|..+++.+.|..|+..
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 356788888888888888765444 558888888888899998999888888887 55555556666677766666654
Q ss_pred HHHH----------------Hhc--------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 140 CTEA----------------LNL--------------DD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 140 ~~~A----------------l~l--------------~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.... |.. -| +.+....+.|-+.++-|+|++|+.-|+.++....-++-
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 3322 111 12 34666777888888888888888888888887765543
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.96 E-value=0.00046 Score=62.32 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYS 155 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~---~a~~ 155 (372)
.+..+++.|...+..|+|.+|+..|+......|. ..+...++.++++.++|++|+...++-+.+.|+++ -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3456889999999999999999999999999887 78899999999999999999999999999998874 4678
Q ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHccCCCcHH
Q 017383 156 RRATARKELG--------KLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 156 ~lg~~~~~lg--------~~~~A~~~~~~al~l~P~~~~ 186 (372)
.+|.++...= -..+|...|+..+...|+..-
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 8888876432 356899999999999998743
No 193
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.91 E-value=0.00036 Score=76.26 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=58.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~ 137 (372)
..|++++|...|.+...... .++...|..+...|.+.|++++|+..|...... .|+...|..+..+|.+.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555555554331 123334445555555555555555555554432 244445555555555555555555
Q ss_pred HHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 138 DDCTEALNL----DDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 138 ~~~~~Al~l----~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
..+...... .|+ ..+|..+-.+|...|++++|...|+...+.
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 555554431 222 334444444555555555555555554444
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.5e-05 Score=51.28 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 193 (372)
.+++.+|.+|..+|++++|+..|+++++.+|+|..++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999887754
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.89 E-value=3e-05 Score=47.54 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
+|+.+|.+|+.+|++++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 196
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.87 E-value=0.00054 Score=74.87 Aligned_cols=118 Identities=12% Similarity=-0.013 Sum_probs=65.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~ 137 (372)
..|++++|...|+...+.+.. +....|..+...|.+.|++++|+..|.+..+. .|+...|..+..+|.+.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 445556666666555554411 23333445555555666666666666555543 344555555555566666666666
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 138 DDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 138 ~~~~~Al~l~-p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
..+...++.. +-+..+|..+..+|...|++++|...|++..
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6666655543 2334556666666666666666666666554
No 197
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=3.5e-05 Score=47.22 Aligned_cols=34 Identities=38% Similarity=0.461 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 151 ~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
+.+|+.+|.++..+|++++|+.+|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.00039 Score=59.75 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=99.4
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA 136 (372)
.+|++.+|..+|++++.-- --.++..+..+++..+..+++..|...++...+.+|. ++...-+|.+|..+|++.+|
T Consensus 101 elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 7799999999999999733 1125556778999999999999999999999999987 88888899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
+..|+.++...|. +.+....|..+..+|+.++|..-+..+.
T Consensus 180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999887 4566677888999999888876665443
No 199
>PLN03077 Protein ECB2; Provisional
Probab=97.82 E-value=0.00052 Score=74.21 Aligned_cols=127 Identities=10% Similarity=0.104 Sum_probs=96.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~~la~~~~~~g~~~eA 136 (372)
..|+.++|+..|++..+..- .++...+..+-..|.+.|.+++|..+|+...+ +.|+...|..+..+|.+.|++++|
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 67889999999998776431 23444455666678888999999999988773 356678888888999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
.+.+++. .+.|+ ...|..+-.++...|+.+.|....+++++++|++...+-
T Consensus 645 ~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 645 YNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 9888874 34554 556666666777888888888888888899988766543
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=1.9e-05 Score=48.80 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=24.7
Q ss_pred HHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 106 ~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
+|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46777778887 778888888888888877775
No 201
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00018 Score=64.17 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCchhhHHHHHhhhh--------cCCCCchH--------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC
Q 017383 53 KPSPSGNSYSRNYDPVSHISSSLM--------NEESTPDA--------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (372)
Q Consensus 53 ~~~~~~y~~g~~~~A~~~~~~al~--------~~p~~~~a--------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~ 116 (372)
......|..|+|.+|...|..|+. -.|..++- -.+.+...|+...|+|-++++.....|..+|.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 344455799999999999999874 33443321 13568899999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383 117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155 (372)
Q Consensus 117 -~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~ 155 (372)
..+|+.+|.++...=+..+|..++..+|+++|.-..+-.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999999999999999999998766543
No 202
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0011 Score=64.47 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=124.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~ 137 (372)
...|.+.+...|+.+|++-|+.. .+..|...|....++.+...|...+..||...|...++-..-..-+++++++...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 45788999999999999998753 3445667788888999999999999999999999777777777788999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CcHHH-----------HHHHHHHHHHHHHHHHhh
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-QNQEI-----------KKQLAEVKSLYEKEVFQK 205 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P-~~~~~-----------~~~l~~a~~~~~~~~~~~ 205 (372)
..|++-|...|.+..+|...|..-..+|+.+.|...|+-|+.... +.++. .+.+.+++.+|++.+...
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987643 22333 377888888888877665
No 203
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.78 E-value=8.1e-06 Score=75.89 Aligned_cols=90 Identities=22% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA 136 (372)
++..|.++.|++.|..++.++|. .+..|-.+|.++.++++...||..|..+++++|+ +.-|-.+|.++..+|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 46789999999999999999998 4555669999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 017383 137 EDDCTEALNLDDR 149 (372)
Q Consensus 137 ~~~~~~Al~l~p~ 149 (372)
-.++..|++++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988743
No 204
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00063 Score=63.40 Aligned_cols=145 Identities=13% Similarity=0.080 Sum_probs=116.0
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC----HHHHHHHHHHHHHhcCH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT----AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~----~~~~~~la~~~~~~g~~ 133 (372)
+..|++-+|...+++.|+..|. +..+++.--..|+..|+...-...+++.+.. +++ ..+.-.++.++...|-|
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 6889999999999999999998 5555667778899999999999999999987 566 34445678899999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CcH-H-H-----HHHHHHHHHHHH
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-------QNQ-E-I-----KKQLAEVKSLYE 199 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P-------~~~-~-~-----~~~l~~a~~~~~ 199 (372)
++|++...+|+++++.+.-+.+..+.++...|++.++.+...+--..-- +|. . + ..++..+...|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999999999999999999999999999999999987765433221 110 0 0 156777777777
Q ss_pred HHHHhh
Q 017383 200 KEVFQK 205 (372)
Q Consensus 200 ~~~~~~ 205 (372)
+.+...
T Consensus 272 ~ei~k~ 277 (491)
T KOG2610|consen 272 REIWKR 277 (491)
T ss_pred HHHHHH
Confidence 766543
No 205
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.74 E-value=0.0003 Score=76.36 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=100.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK 129 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~ 129 (372)
..|++++|...++.++...+... ...+...+|.++...|++++|..++.+++..... ..++.++|.+++.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67999999999999998544322 2345678899999999999999999999976432 4567889999999
Q ss_pred hcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 130 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 130 ~g~~~eA~~~~~~Al~l~p~--------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
.|++++|...+.+++.+... ....+..+|.++...|++++|...+++++.+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 99999999999999886321 233466789999999999999999999987643
No 206
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00029 Score=65.49 Aligned_cols=131 Identities=24% Similarity=0.334 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcccc---------c-----cccccC--CCCCCCC-CCCCchhhHHHHHhhhhcCCCC
Q 017383 19 LQDWDLSLNEKDKKMKHKASSKDNLVS---------S-----SLKSAK--KPSPSGN-SYSRNYDPVSHISSSLMNEEST 81 (372)
Q Consensus 19 l~~~e~~ik~~~~~l~~~~~~~~~~~~---------~-----~~~~~~--~~~~~~y-~~g~~~~A~~~~~~al~~~p~~ 81 (372)
-+.|.+++.+.--.|.+-+..+..... + ...++. +.-|+.| ...+|..|+..|.+.|+..-.+
T Consensus 35 ~Dew~kEm~k~PfFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D 114 (390)
T KOG0551|consen 35 EDEWEKEMNKVPFFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD 114 (390)
T ss_pred HHHHHHHHhcCcHHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC
Confidence 357888888766666655533222100 0 001111 3445554 7789999999999999866444
Q ss_pred c--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 82 P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 82 ~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
+ .+..|.+++.+.+-.|+|..|+....+++.++|. ..+++.-|.|++.+.++.+|..+|+..+..+..
T Consensus 115 ~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 115 PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4 4556889999999999999999999999999999 999999999999999999999999998776544
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.68 E-value=0.00051 Score=68.89 Aligned_cols=104 Identities=15% Similarity=0.042 Sum_probs=84.5
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA 136 (372)
.+.+.|...+......-|+ .+..++..|..+...|+.++|+++|++++..... ...++.+|.|+..+++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4566788888888888887 5556778999999999999999999999864333 56688999999999999999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Q 017383 137 EDDCTEALNLDDR-YIKAYSRRATARKELGKL 167 (372)
Q Consensus 137 ~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~ 167 (372)
..++.+.++.+.- .+-..|..|.++..+|+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999986543 334455678899999988
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0019 Score=57.50 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=104.3
Q ss_pred CCCCCCCCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHh-hcHHHHHHHHHHHHccCCC-------HHHHH
Q 017383 54 PSPSGNSYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYA 121 (372)
Q Consensus 54 ~~~~~y~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~-g~~~~Ai~~y~~al~~~p~-------~~~~~ 121 (372)
..+++|..++..+|+.++++++++..+... +..+..+|.+|-.. .++++||.+|+++-+.... ..++.
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 345667888999999999999998765543 33466889888765 9999999999999887644 34455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKA-YSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a-~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
..|..-..+++|.+|+..|++...-.-++ ++- ++.-|.|+...++.-.+...+++...++|.....
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 55666678899999999999987765444 233 4456788888899999999999999999987654
No 209
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.63 E-value=0.00012 Score=72.54 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=95.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383 90 LGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (372)
Q Consensus 90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~ 167 (372)
.|..+...|+-..|+.|+..|+...|. .....++|.++++-|-...|-..+.+++.++-.-+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 344445689999999999999999997 666899999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 168 KESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 168 ~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
+.|++.|+.|++++|+++++...|..+.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999999999987776654
No 210
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.63 E-value=0.00081 Score=71.00 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=99.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~ 137 (372)
..|++++|...|++..+. +...|+.+...|.+.|++++|+..|++.+.. .|+...|..+-.++.+.|..++|.
T Consensus 372 k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 679999999999987652 3445789999999999999999999998764 577888988999999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 138 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 138 ~~~~~Al~l~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
..|+...+..+ -+...|..+..++...|++++|.+.+++. ...|+.
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~ 494 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTV 494 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH
Confidence 99999986432 23456888999999999999999999874 345553
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.002 Score=53.76 Aligned_cols=91 Identities=24% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
..|......|+...++..+.+++.+... ..++..++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3455566677888888888888887422 13455577788899999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
++|.+-.+|..+-.+|...|+..+|+..|+++..
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987643
No 212
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.58 E-value=0.0011 Score=62.32 Aligned_cols=156 Identities=16% Similarity=0.074 Sum_probs=116.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHh----hhhcCCCCchHHHHH
Q 017383 14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISS----SLMNEESTPDATSEK 88 (372)
Q Consensus 14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~----al~~~p~~~~a~~~~ 88 (372)
++-+.+..|.+.+.+.++.+.+.... +.+..+. .+|.|.+++.+.-. +...+.......++.
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~l-------------G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVL-------------GCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------------ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688899999999888876444300 1112222 56777776655433 333443333445678
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSR 156 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~ 156 (372)
+++..+.+.-+|.+++.+-.-.+.+- |. ..+...+|.+++.++.|+++++.|+.|++...++ ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 99999999999999999998888863 32 5667779999999999999999999999875443 456889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 157 RATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 157 lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
+|..+..+.++++|+.+..+|+.+--
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 99999999999999999999988753
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.55 E-value=0.0012 Score=71.72 Aligned_cols=121 Identities=14% Similarity=0.021 Sum_probs=97.4
Q ss_pred CCCCchhhHHHHHhhhhcCCC-------CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 126 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~-------~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~ 126 (372)
..|++++|...+..+....+. .........+|.+++..|++++|..++++++...+. ..++..+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 668999999999887654221 113344556788999999999999999999986543 3567889999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
+...|++++|...+++++.+.... ..++..+|.++...|++++|...+++++.+
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999764321 346778899999999999999999999886
No 214
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.52 E-value=0.0017 Score=51.65 Aligned_cols=92 Identities=24% Similarity=0.316 Sum_probs=70.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccC---CC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCC
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALN-------LDD 148 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~---p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~-------l~p 148 (372)
..|.-.+..|-|++|...|.++++.. |. +-++..|+.++..+|+|++++....++|. |+.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 33455667899999999999999864 22 45678899999999999998888887775 344
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 149 RY----IKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 149 ~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
+. ..+.+++|.++..+|+.++|+..|+++-++
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 456678999999999999999999988654
No 215
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00053 Score=62.97 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=74.3
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
|..+|+..+..+.++. |...++....+.|-..++.|+|+.|+..|+.|++..-- +.+-+++|.|++..|+|..|+
T Consensus 123 Yse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred cccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 4445555544443332 32234555667888888888888888888888887654 666678888888888888888
Q ss_pred HHHHHHHhc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 138 DDCTEALNL----DDRY-------------------------IKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 138 ~~~~~Al~l----~p~~-------------------------~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
+.....++. .|.. ..++...+.++++.|+++.|.+.+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 877766654 2321 345555666777777777776554
No 216
>PLN03077 Protein ECB2; Provisional
Probab=97.50 E-value=0.0016 Score=70.43 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=98.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~ 137 (372)
..|++++|...|... . . +...|..+...|...|+.++|+..|++..+. .|+...|..+-.++.+.|.+++|.
T Consensus 536 k~G~~~~A~~~f~~~---~-~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 536 RCGRMNYAWNQFNSH---E-K--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HcCCHHHHHHHHHhc---C-C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 679999999999886 2 2 4556889999999999999999999988774 577777777777899999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 138 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 138 ~~~~~Al~l~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
..|+......+ -+...|..+..++...|++++|...+++. .+.|+.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~ 657 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP 657 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH
Confidence 99999885432 23578889999999999999999999885 466763
No 217
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.00019 Score=43.95 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 218
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.41 E-value=0.0025 Score=60.70 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 96 ~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
+-+++..=+...++.+...|+ +.++..+|..+++.+.|.+|..+++.|+...|+ ...|..+|.++..+|+..+|.+.+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence 344444444455555555554 555555555555555555555555555554443 233444555555555555555555
Q ss_pred HHHH
Q 017383 175 EFAL 178 (372)
Q Consensus 175 ~~al 178 (372)
+.++
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 5554
No 219
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.39 E-value=0.0011 Score=45.31 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
+.++.+|..++.+|+|++|..+.+.+|+++|+|.++......+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788888999999999999999999999999988765544443
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.35 E-value=0.00033 Score=42.83 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~ 149 (372)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777664
No 221
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.00081 Score=65.50 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHH-HccCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRS-IALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALN------- 145 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~a-l~~~p~---------~~~~~~la~~~~~~g~~~eA~~~~~~Al~------- 145 (372)
.+.++...++.+|-.|+|..|+..+... +...|. ...|+|+|.+++.+|.|.-+..+|.+|++
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444667799999999999999987654 333232 34569999999999999999999999996
Q ss_pred --cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 146 --LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 146 --l~p---------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
+.| .....+|+.|..|...|+.-.|.++|.++......|+..|-+++++-.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 111 236779999999999999999999999999999999999999988754
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00078 Score=63.24 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 017383 93 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170 (372)
Q Consensus 93 ~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A 170 (372)
.+....+|..|+..++-.+.++.. ..+-..+|.|++++|+|++|+..|+-+..-+.-+.+.+.+++.+++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 356778999999999998877755 567778999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHH
Q 017383 171 IEDSEFA 177 (372)
Q Consensus 171 ~~~~~~a 177 (372)
...-.++
T Consensus 111 ~~~~~ka 117 (557)
T KOG3785|consen 111 KSIAEKA 117 (557)
T ss_pred HHHHhhC
Confidence 8876554
No 223
>PRK10941 hypothetical protein; Provisional
Probab=97.26 E-value=0.0029 Score=58.52 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
...+.|+=.+|...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..+++..+...|+++.+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 566788899999999999999999999999999999999999999999999999999999999999998764
No 224
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00036 Score=65.44 Aligned_cols=112 Identities=28% Similarity=0.344 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCC---C-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p---~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
.++.|+..++.++|..|..-|.+++..-. . ...+.+++.|-++++.+..|+..+..+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 45678889999999999999998876311 0 356778999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
+++..++++++|.++..+.++++|+.++..+....|++..+...+..+....
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999988877666655433
No 225
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.25 E-value=0.003 Score=65.61 Aligned_cols=124 Identities=14% Similarity=0.005 Sum_probs=103.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
+.+++.+|+....+.++..|+...+.+ ..|..++++|++++|..|++..-...++ ...+-.+-.||..+|++++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 668999999999999999999877777 5588999999999999887776655565 7777888999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
+|++++..+|+ -..++.+=.+|.+-+.|.+=...--+..+..|.++-
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999 777777777888888877655555555566676653
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0063 Score=55.20 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=100.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh----cCHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE 135 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~----g~~~e 135 (372)
..|++++|+........+ ++.+ .--.++.+..+++-|.....+..+++.+ ..+..+|.+|.++ +.+.+
T Consensus 120 ~~~~~deAl~~~~~~~~l-----E~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGENL-----EAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred cCCChHHHHHHHhccchH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence 567888888877763332 3444 3356788889999999999998888765 2233344444333 46889
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
|.-.|+..-...|..+......+.++..+|+|++|...++.+|..++++++...++--+....
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL 254 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 999999998888888999999999999999999999999999999999999876665544333
No 227
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.027 Score=55.12 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=85.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~ 138 (372)
.++++..|.+.|++||..+-.+... |...+.+-++.+....|...+++|+.+-|. -..|+..-..--.+|+...|..
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4567778888888888888554333 556777778888888888888888888888 6777777777777888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
.|++-+...|+- .+|...-.--..-...+.|...|++-+-..|+-
T Consensus 163 iferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v 207 (677)
T KOG1915|consen 163 IFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKV 207 (677)
T ss_pred HHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH
Confidence 888888887763 444444444444455556666666655555543
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.00037 Score=67.78 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=85.4
Q ss_pred CCCCCchhhHHHHHhh-hh------cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---------cCCC------
Q 017383 59 NSYSRNYDPVSHISSS-LM------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---------LSPT------ 116 (372)
Q Consensus 59 y~~g~~~~A~~~~~~a-l~------~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---------~~p~------ 116 (372)
|..|+|..|...+... +. +.|.......++++|-+++..|.|.-++.+|.+||. +.|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 5778888888876543 22 223333455678999999999999999999999995 1221
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 117 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 117 ----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
..+++|.|..|+..|+.-.|.++|.++....-.++..|.+++.+...
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999987653
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0031 Score=57.09 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCCCCchhhHHHHHhhhh----cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383 59 NSYSRNYDPVSHISSSLM----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~----~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
...||.+.|..+++.+-+ ++.......++.+.+.+|...++|..|...|++++..||. +.+-++.|.|++.+|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 367899999999985443 3333334456788899999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 017383 134 QEAEDDCTEALNLDDRY 150 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~ 150 (372)
.+|++..+.++...|..
T Consensus 303 ~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHhccCCcc
Confidence 99999999999999975
No 230
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.18 E-value=0.021 Score=54.50 Aligned_cols=122 Identities=11% Similarity=0.006 Sum_probs=104.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA 136 (372)
+.-|+|.+|.....+.-+-.+. -...+..-+...-..|+++.|-.+..++-+..++ ...+..++...+..|++..|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4679999999999997776654 3333455567778899999999999999999544 77788899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
..-...++...|.++.++...-.+|...|++.+....+.+.-+-.-
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999998888776554
No 231
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.012 Score=51.13 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATA 160 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~ 160 (372)
....++..+...|++++|+..++.++..-.+ ..+-.++|.+.+.+|.+++|+..+..... +.+ +.....+|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 4567888999999999999999999976544 66678899999999999999988776432 222 2335678999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCc
Q 017383 161 RKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 161 ~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
+...|+-++|...|++++...++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999998554
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.014 Score=54.53 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~-~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
+|..+.+...+.+..+.|...|.+|++..+. ..+|...|..-+. .++.+.|...|+.+++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3556777888888899999999999965544 7888888888666 4566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCcH
Q 017383 164 LGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 164 lg~~~~A~~~~~~al~l~P~~~ 185 (372)
+|+.+.|...|++++..-|...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999888765
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.014 Score=53.95 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=82.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHH-HH--HHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RA--MAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~-la--~~~~~~g~~~eA 136 (372)
..|++.+|...+..++...|.+.++.. .++.+|...|+.+.|...+...=..... ..+.. .+ ..+.+.....+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~--~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKL--LLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPE- 221 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHH--HHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCC-
Confidence 445666666666666666666544433 5566666666666665554442111111 11111 11 11111111111
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIKKQLAEVKSLYE 199 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~a~~~~~ 199 (372)
...+++.+..+|++..+-+.+|..+...|++++|.+.+-..++.+-+ +..++..+-++...++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 13455566778999999999999999999999999999999887654 4566777766666554
No 234
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.04 E-value=0.0052 Score=59.00 Aligned_cols=92 Identities=20% Similarity=0.347 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p 148 (372)
..-|..+|++|+|..|+.-|.-+|++... ..+...+..||+++++.+-|+....+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 34567788999999999999888886322 23456789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 149 RYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 149 ~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
.+...+.+.|.+...+.+|.+|...+--+.-
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887765543
No 235
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.004 Score=64.06 Aligned_cols=114 Identities=29% Similarity=0.450 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRR 157 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~--g~~~eA~~~~~~Al~l~p~~~~a~~~l 157 (372)
......|+.++..++|.+|.--|..++.+-|. +....+.+.||+.+ |+|..++..|+-|+...|....++..+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 34567899999999999999999999999885 56677888877755 599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 158 g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
+.+|..+++++-|+.+..-...+.|.+..+...+.+.+..|
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777766
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.79 E-value=0.0026 Score=38.29 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p 148 (372)
++++|.|+..+|++++|+..|++.+...|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444333
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.78 E-value=0.034 Score=60.68 Aligned_cols=141 Identities=15% Similarity=0.026 Sum_probs=113.9
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~ 140 (372)
|.-+.-...|++|.+.+. -...|..+..+|.+-+++++|.+.|+.-++..-+ ...|...|..++..++-+.|...+
T Consensus 1511 G~eesl~kVFeRAcqycd---~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCD---AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred CcHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 444455667777777662 1234667888999999999999999999988776 889999999999999999999999
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH----------HHHHHHHHHHHHhh
Q 017383 141 TEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------AEVKSLYEKEVFQK 205 (372)
Q Consensus 141 ~~Al~l~p~--~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l----------~~a~~~~~~~~~~~ 205 (372)
.+|+.--|. +.....-.+.+-+..|+-+.+...|+-.+.-.|.-.+.|.-| ..++.+|++.+..+
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999999888 788888899999999999999999999999999887776433 34455666655543
No 238
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.75 E-value=0.024 Score=49.20 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHH----HH
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIK----AY 154 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--~~~~----a~ 154 (372)
.++..+|..|.+.|+++.|+++|.++.+.... .+.+.++-.+.+..++|..+..+..+|-.+-. .+.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34779999999999999999999999887644 78889999999999999999999999877632 2322 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 155 SRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 155 ~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
...|..+...|+|.+|...|-.++.-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 446788888999999999987665433
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.75 E-value=0.035 Score=51.87 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=94.6
Q ss_pred chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH-hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141 (372)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~-~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~ 141 (372)
.+.|...|.++++......+ .|...|..-+. .++.+.|...|+.+++..|. ...|.....-+..+|+.+.|...|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 56788899999865543333 45577877556 67777799999999999998 7888888888899999999999999
Q ss_pred HHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 142 EALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 142 ~Al~l~p~~~---~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
+++..-+... ..|......-...|+++......+++..+.|.+..
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999866654 56777778888889999999999999988887443
No 240
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.75 E-value=0.0082 Score=40.98 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
+.++.+|..++++|+|.+|..+++.+|+++|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356778888899999999999999999999998777655443
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.74 E-value=0.015 Score=57.24 Aligned_cols=116 Identities=17% Similarity=0.044 Sum_probs=81.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------CC-----------------
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SP----------------- 115 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------~p----------------- 115 (372)
...+...-+....+||+++|+..+++. .++.. ...-..+|..+|+++++. +.
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYI--LLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYI--LLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHh--hcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 345666677888889999988666644 44431 112234444444444432 11
Q ss_pred C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 116 T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 116 ~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
+ ..+-..+|+|..++|+.++|++.+...++.+|. +...+.++-.++..++.|.++...+.+.-.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0 234467899999999999999999999988775 467889999999999999999888887543
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.73 E-value=0.0027 Score=39.56 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 017383 121 ANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 121 ~~la~~~~~~g~~~eA~~~~~~ 142 (372)
.++|.+|..+|+|++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 243
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.73 E-value=0.0028 Score=36.82 Aligned_cols=29 Identities=41% Similarity=0.493 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p 148 (372)
+.++|.++..+|++++|+.++++++.++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.045 Score=54.00 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRAT 159 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-~p~~~~a~~~lg~ 159 (372)
.++-..+|+++.+.|+.++|++.|...++.+|. ..++.|+-.|++.++.|.++...+.+-=.+ -|..+...|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344568999999999999999999999998876 778999999999999999998888875322 2455666666555
Q ss_pred HHHH-cCC---------------HHHHHHHHHHHHccCCCcHHH
Q 017383 160 ARKE-LGK---------------LKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 160 ~~~~-lg~---------------~~~A~~~~~~al~l~P~~~~~ 187 (372)
+..+ .|+ -..|++.+.+|++.+|+.+..
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4322 121 235778999999999998765
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.71 E-value=0.0026 Score=38.25 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
.+++++|.++..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 246
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.71 E-value=0.039 Score=45.03 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 114 SPTAVAYANRAMAYLKLRR---FQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 114 ~p~~~~~~~la~~~~~~g~---~~eA~~~~~~Al~-l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
++.....+++|.++.+..+ ..+.+..++..+. -.|. .-+..|.++..++.+|+|+.|+.+.+..|+.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4557778889998887764 5568888888886 4443 367788999999999999999999999999999999886
Q ss_pred HHHH
Q 017383 189 KQLA 192 (372)
Q Consensus 189 ~~l~ 192 (372)
..-.
T Consensus 109 ~Lk~ 112 (149)
T KOG3364|consen 109 ELKE 112 (149)
T ss_pred HHHH
Confidence 4433
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.018 Score=47.85 Aligned_cols=60 Identities=22% Similarity=0.203 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
++..++..+...|++++|+..+.+++..+|. ..+|..+-.+|..+|++.+|+..|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567788889999999999999999999998 88999999999999999999999988754
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.70 E-value=0.05 Score=52.06 Aligned_cols=122 Identities=20% Similarity=0.125 Sum_probs=96.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc---CCC------HHHHHHHHHHHHHh
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL 130 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~---~p~------~~~~~~la~~~~~~ 130 (372)
..|+++.|..+...+-...|..+.+ ....=......|+|+.|+...+...+. .++ +.++...++..+..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 5688888888888888888885555 334444567889999999988776653 233 44455555555443
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
+...|..+...+++|.|+...+-..-+.+++..|+..++-..++.+.+.+|+-
T Consensus 244 -dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 244 -DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred -ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 48889999999999999999999999999999999999999999999999963
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.016 Score=51.67 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=64.0
Q ss_pred HHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 017383 94 CFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRAT 159 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~-g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~ 159 (372)
+|+.++.++|+.|+++++++..+ +.-+..+|..|-.- .++++|+.+|++|-...... -+++...+.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 44555788888888888887654 34455677777644 77888888888887654322 344555666
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 160 ARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 160 ~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.-..+|+|.+|+..|+++....-+|.-
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 667788888888888888776655543
No 250
>PRK10941 hypothetical protein; Provisional
Probab=96.68 E-value=0.018 Score=53.29 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
.+.++-.+|...++|+.|+.|.+..+.++|+ +.-+..||.+|.++|.+..|..+++..++..|+++.+-.-...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4567778899999999999999999999999 8889999999999999999999999999999999887655444
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.67 E-value=0.0058 Score=56.49 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
++......+.-..+.|+.++|...|+.|+.++|. +.++..+|.....-++.-+|-.+|.+|+.++|.+.+++.+++...
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 4444455666778899999999999999999998 999999999888889999999999999999999999998877533
Q ss_pred H----HcCCHHHHHHHHHHHHccCC
Q 017383 162 K----ELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 162 ~----~lg~~~~A~~~~~~al~l~P 182 (372)
- -..++-+.+......+..-+
T Consensus 195 plV~~iD~r~l~svdskrd~~~~i~ 219 (472)
T KOG3824|consen 195 PLVSAIDRRMLRSVDSKRDEFNHIQ 219 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 22233344444444444333
No 252
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.67 E-value=0.044 Score=57.32 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=82.8
Q ss_pred HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~ 172 (372)
....++|.+|+....+.++..|+ ..+..--|.+++++|++++|..+++..-.+.+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999 77778889999999999999977777777788888899999999999999999999
Q ss_pred HHHHHHccCCC
Q 017383 173 DSEFALRLEPQ 183 (372)
Q Consensus 173 ~~~~al~l~P~ 183 (372)
.|++++..+|+
T Consensus 99 ~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 99 LYERANQKYPS 109 (932)
T ss_pred HHHHHHhhCCc
Confidence 99999999999
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.63 E-value=0.078 Score=51.19 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=87.6
Q ss_pred CCCchhhHHHHHhhhhcC-CCCchHHHHHHHHHHHHH---------hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 017383 61 YSRNYDPVSHISSSLMNE-ESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL 130 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~-p~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~ 130 (372)
.|+.++|+..+..++... +. .+..+...|.+|-. ....++|+.+|.++.+++|+...=.|++.++...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~--~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENP--DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 589999999999966544 33 33445566766642 3357899999999999998855556777777777
Q ss_pred cCHHHHHHHHHH-HHhc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383 131 RRFQEAEDDCTE-ALNL-----------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (372)
Q Consensus 131 g~~~eA~~~~~~-Al~l-----------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 190 (372)
|.-.+....+.+ .+.+ .-.+.-.+..++.+....|++++|...+++++++.|...+...-
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St 344 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELEST 344 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHH
Confidence 753333222221 1111 12233445567778889999999999999999999987765433
No 254
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.55 E-value=0.029 Score=44.29 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHHHH
Q 017383 92 NECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYSR 156 (372)
Q Consensus 92 ~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~ 156 (372)
..++..|++-+|++..+..+...++ +..+..-|.++..+.. .-.|+++|.++..+.|..+..++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~ 83 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFE 83 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHH
Confidence 3444555555555555555544433 1223333444433321 234566666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 157 RATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 157 lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
+|.-+.....|++++.-.+++|.+
T Consensus 84 la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 84 LASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666555555566666666555543
No 255
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.52 E-value=0.043 Score=49.12 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=67.6
Q ss_pred HHHhhcHHHHHHHHHHHHcc------CCC--HHHHHHHHHHHHHhcCHHH-------HHHHHHHHHhcCC------CCHH
Q 017383 94 CFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRRFQE-------AEDDCTEALNLDD------RYIK 152 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~~g~~~e-------A~~~~~~Al~l~p------~~~~ 152 (372)
+-....+++|++.|.-|+-. .+. +.++..+|.+|..+|+.+. |+..|.+|+.... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34456778888887777653 222 7788889999999998544 5555555555432 2267
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
..+.+|.+...+|++++|..+|.+++...-.+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 788999999999999999999999998765444
No 256
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.52 E-value=0.017 Score=57.72 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383 83 DATSEKELGNECF-KQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158 (372)
Q Consensus 83 ~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg 158 (372)
..+.+..++..|+ ..|+..+|+.||..++...|. -.++..+|.++.++|...+|--.+..|+.-.|.....++.+|
T Consensus 211 ~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~ 290 (886)
T KOG4507|consen 211 SSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG 290 (886)
T ss_pred hhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence 3445566666665 579999999999999998876 677899999999999999999999999998888888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 159 TARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.++..+|.+.....+|..+.+.+|.....
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 99999999999999999999999987554
No 257
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.52 E-value=0.011 Score=54.70 Aligned_cols=70 Identities=19% Similarity=0.049 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
+-.+.|.-..+.|+.++|...|+.|+.++|+++.++...|......++.-+|-.+|-+||.+.|.|.++.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3345566677889999999999999999999999999999999999999999999999999999999885
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0044 Score=38.56 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 153 AYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
+|.++|.+|..+|++++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999966543
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.49 E-value=0.0044 Score=35.94 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
.+++++|.++..+|+++.|..+|++++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998863
No 260
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.033 Score=56.24 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg 158 (372)
.+.+-|.-+|+..+|..++++|...+...|. +....+++.||+++.+.+.|.++++.|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3567788899999999999999999987665 778899999999999999999999999999999988877777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC
Q 017383 159 TARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
.+...-|.-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 78888899999999988877554
No 261
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.031 Score=54.80 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=91.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCC--------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEEST--------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY 127 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~--------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~ 127 (372)
-.|++.+|+............. ..+..+..+|..+..-|.|+.|...|..|+++-.. +-+-.|+|.+|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 5689999988877766533222 24567888999999999999999999999998655 55568899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 128 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 128 ~~~g~~~eA~~~~~~Al~l~p~~----------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
+..|+-+.-.+..+ .+.|.+ ..+++..|...+..+++.||...+.+.|++.
T Consensus 415 L~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 99887554333332 234442 4568888999999999999999999999987
No 262
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.40 E-value=0.023 Score=44.78 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=73.9
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhc-----------HHHHHHHHHHHHccCCC-HHHHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM 125 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~-----------~~~Ai~~y~~al~~~p~-~~~~~~la~ 125 (372)
|..|++-+|++..+..+....+...+ ..+...|.+++.+.. +-.|++||.++..+.|. +..++.+|.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 57899999999999999988776544 456778888876543 56799999999999999 888999998
Q ss_pred HHHHhcCHHHHHHHHHHHHhc
Q 017383 126 AYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 126 ~~~~~g~~~eA~~~~~~Al~l 146 (372)
-+-...-|++++.-+.++|..
T Consensus 87 ~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 87 QLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhhhHHHHHHHHHHHHHHhcc
Confidence 877777899999999999875
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.37 E-value=0.11 Score=52.09 Aligned_cols=125 Identities=11% Similarity=-0.018 Sum_probs=95.4
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHH-----HHHHHHH-HH----HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATS-----EKELGNE-CF----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~-----~~~~g~~-~~----~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~ 129 (372)
.||-+.++..+.++.+.. +...+.+ .+..+.. ++ .....+.|...........|+ ...++..|..+..
T Consensus 201 ~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 388899999999988733 3322221 1111111 11 355778899999999999999 7778999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 130 LRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 130 ~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
.|+.++|+..+++++...... .-+++.+|.++..+++|++|..+|...++.+.-.+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 999999999999998544332 446889999999999999999999999987654433
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.06 Score=50.62 Aligned_cols=127 Identities=12% Similarity=0.029 Sum_probs=99.6
Q ss_pred CCCCCchhhHHHHHhhhhc-CCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383 59 NSYSRNYDPVSHISSSLMN-EESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~-~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e 135 (372)
|.+|+.+.-...+++++-. +++.| ..+..-.++..+...|-|++|.+..++++++++. ..+....+.++...|++++
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 3788888889999999877 66643 2444556778888999999999999999999998 8888999999999999999
Q ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--ccCCCcH
Q 017383 136 AEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESIEDSEFAL--RLEPQNQ 185 (372)
Q Consensus 136 A~~~~~~Al~l~p~----~~~a~~~lg~~~~~lg~~~~A~~~~~~al--~l~P~~~ 185 (372)
+.++..+--..-.. ...-|..-+..+.+-+.|+.|+..|..-+ ++.-++.
T Consensus 228 g~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 228 GKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 99988775433221 13346667888999999999999998755 3444444
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.35 E-value=0.05 Score=43.45 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=64.0
Q ss_pred CCchhhHHHHHhhhhcCCCC----------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHc-------cCCC-----HHH
Q 017383 62 SRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----AVA 119 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~----------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~-------~~p~-----~~~ 119 (372)
|-|++|...|.++++..-.. .++.++-.++..+..+|+|++++....++|. ++.+ ..+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 67888999999998754332 2455677888999999999987776666664 4554 455
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
-+++|.++..+|+.++|+..|+.+-++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 688999999999999999999998653
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.28 E-value=0.075 Score=50.77 Aligned_cols=104 Identities=18% Similarity=0.054 Sum_probs=58.1
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc---CC-------------------
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIAL---SP------------------- 115 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~---~p------------------- 115 (372)
..|.++.|...+.++...++... ........+..++..|+..+|+..+...+.. ..
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV 237 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence 45666666666666665442211 2223445566666667766666666665550 00
Q ss_pred ------C-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 116 ------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 116 ------~-------~~~~~~la~~~~~~------g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
. +.++..+|...... +.+++++..|..|+.++|+..++|+..|..+..
T Consensus 238 ~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 238 ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 0 34444455544444 556666666666666666666666666655443
No 267
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.20 E-value=0.0079 Score=53.46 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=29.7
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
..++.+.|.+.|.+|+.+.|.....|+++|......|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555555555555555555555555555555555555555555543
No 268
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.17 E-value=0.074 Score=53.89 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=105.5
Q ss_pred CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------------HH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AV 118 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------------~~ 118 (372)
+.|+.+.|...|++++...-... -+.+|.+.|..-.+..+++.|+.+.++|...-.+ ..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 67888888888888888663322 2455677777777888888888888888765211 24
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCcHHHH--------
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEIK-------- 188 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~--P~~~~~~-------- 188 (372)
+|...+...-..|-++.....|.+.|.|.--.+..-.|.|..+....-+++|...|++.+.+. |+-.++|
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 555566666667777777788888888877778888888888888888888888888888776 3444443
Q ss_pred -----HHHHHHHHHHHHHHHhhh
Q 017383 189 -----KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 189 -----~~l~~a~~~~~~~~~~~~ 206 (372)
..+..|+.+|++++..=|
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCC
Confidence 345666777777766443
No 269
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.01 E-value=0.1 Score=46.65 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=71.1
Q ss_pred CCCCchhhHHHHHhhhh-----cCCCCchHHHHHHHHHHHHHhhc-------HHHHHHHHHHHHccCC--C-----HHHH
Q 017383 60 SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALSP--T-----AVAY 120 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~-----~~p~~~~a~~~~~~g~~~~~~g~-------~~~Ai~~y~~al~~~p--~-----~~~~ 120 (372)
....+++|+..|.-|+- ..+....|..+..+|.+|...|+ +..|+..|.++++... . ..++
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 33577888888877764 22223456677788888888777 5567777777776542 2 6788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 017383 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRA 158 (372)
Q Consensus 121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~lg 158 (372)
+.+|..+.++|++++|..+|.+++....... ..+..+|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 9999999999999999999999998654433 3444444
No 270
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.18 Score=50.71 Aligned_cols=127 Identities=17% Similarity=0.002 Sum_probs=100.0
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH-HHHHHHH
Q 017383 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE-DDCTEAL 144 (372)
Q Consensus 67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~-~~~~~Al 144 (372)
++..+...+.+++.++.......+...+...++...+.-....++..+|. +.++.++|.+....|....+. .+++.+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666666777777666533223677778889999999999999999998 888999998888777666655 5555599
Q ss_pred hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383 145 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193 (372)
Q Consensus 145 ~l~p~~~~a~~~l------g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 193 (372)
...|++......+ |.....+|+..++..+.+++..+.|.++.+.+.+--
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 9999997776665 899999999999999999999999999877544433
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.89 E-value=0.063 Score=41.02 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLYE 199 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~a~~~~~ 199 (372)
.+..+++++..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..++..+-.+...++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4567888899999999999999999999999999999999999998765 556666666665554
No 272
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.87 E-value=0.34 Score=49.30 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCCCchhhHHHHHhhhh-cCCCCch---HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CC----HHHHHHHHHHHHHh
Q 017383 60 SYSRNYDPVSHISSSLM-NEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL 130 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~-~~p~~~~---a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~----~~~~~~la~~~~~~ 130 (372)
..|+..+-+..|..|+. .+|.... ...|...|..|...|+.+.|...|+++++.. +. +.+|.+-|..-+..
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45677888888988876 5555321 1246688999999999999999999999986 33 78899999999999
Q ss_pred cCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH-----
Q 017383 131 RRFQEAEDDCTEALNLDDR------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----- 187 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~------------------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----- 187 (372)
.+++.|+...++|+..-.. ....|...+.....+|-++.....|++++.|.-..+++
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999876322 24567788888889999999999999999988666665
Q ss_pred -----HHHHHHHHHHHHHHHHh
Q 017383 188 -----KKQLAEVKSLYEKEVFQ 204 (372)
Q Consensus 188 -----~~~l~~a~~~~~~~~~~ 204 (372)
...+.++.+.|++++..
T Consensus 519 mfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCcc
Confidence 35677777888876443
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.72 E-value=0.55 Score=43.74 Aligned_cols=124 Identities=12% Similarity=-0.032 Sum_probs=91.4
Q ss_pred CCCCCchhhHHHHHhhhhcC----CCCc--hHHHHHHHHHHHHHhh-cHHHHHHHHHHHHcc----CC------C-----
Q 017383 59 NSYSRNYDPVSHISSSLMNE----ESTP--DATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T----- 116 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~----p~~~--~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~----~p------~----- 116 (372)
...|+++.|..++.++-... |... -+..+++.|...+..+ +|+.|+.++++++++ .. +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999986644 2221 2346789999999999 999999999999987 21 1
Q ss_pred HHHHHHHHHHHHHhcCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 117 AVAYANRAMAYLKLRRFQEA---EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA---~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
..++..++.+|+..+.++.. ....+.+-...|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 56778899999998876643 3344444445688777775444455558999999999999887544
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.047 Score=47.51 Aligned_cols=91 Identities=19% Similarity=0.096 Sum_probs=70.9
Q ss_pred CCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~ 138 (372)
..|++++|+..++.++....+ +..+.+-..+|.+.+.+|.+++|+..++..-.-+-.+...-.+|.+++..|+-++|..
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 779999999999999864422 2234455688999999999999998876643211114556779999999999999999
Q ss_pred HHHHHHhcCCCC
Q 017383 139 DCTEALNLDDRY 150 (372)
Q Consensus 139 ~~~~Al~l~p~~ 150 (372)
.|++|+..+++.
T Consensus 181 ay~kAl~~~~s~ 192 (207)
T COG2976 181 AYEKALESDASP 192 (207)
T ss_pred HHHHHHHccCCh
Confidence 999999987554
No 275
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.69 E-value=0.24 Score=54.49 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=110.6
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA 136 (372)
..+.+++|.++|+..++..-+... .|..+|..++++.+-+.|...+.+||..-|. .......|..-++.|+-+.+
T Consensus 1542 k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 346889999999999987754334 4668899999999999999999999999997 77788899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
...|+-.+.-+|.-.+.|.-+...-...|+.+-+...|++++.+.=.-..
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 99999999999999999999999999999999999999999988654333
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.38 Score=43.50 Aligned_cols=97 Identities=22% Similarity=0.150 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKA 153 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-----p~~~~a 153 (372)
.+..-+++|...++|++|-.|+.+|++...+ +.+|-..|+..-.+..+.++...+++|..+. |+-+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 3445566677788999999999999854322 6777888888889999999999999998874 333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 154 YSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 154 ~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
-...+--..+.-+.++|+..|++++.+--
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 33344445566788999999999887644
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.3 Score=48.28 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=72.9
Q ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcc
Q 017383 103 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALRL 180 (372)
Q Consensus 103 Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~-~~~A~~~~~~al~l 180 (372)
-+..|+.|+...+. ...|.+...-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.++|+.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 45667888877774 77777666555566668888899999999999999999998887777776 89999999999999
Q ss_pred CCCcHHHHHHHHHH
Q 017383 181 EPQNQEIKKQLAEV 194 (372)
Q Consensus 181 ~P~~~~~~~~l~~a 194 (372)
+|+++..+..+=+.
T Consensus 170 npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRM 183 (568)
T ss_pred CCCChHHHHHHHHH
Confidence 99998887544433
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.27 E-value=0.037 Score=34.92 Aligned_cols=27 Identities=41% Similarity=0.391 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
++.++|.+|..+|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555544
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.22 E-value=0.8 Score=42.65 Aligned_cols=115 Identities=16% Similarity=0.042 Sum_probs=69.1
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccC-CC-HHHHHHHHHHHHHhc----
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLR---- 131 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~-p~-~~~~~~la~~~~~~g---- 131 (372)
.+...|+..|..+.... .+...+.+|..|.. ..++.+|..+|.++.... +. ..+.+++|.+|..-.
T Consensus 91 ~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 34666777776444433 22234567776665 447777777777777653 22 344666666665531
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 017383 132 ---RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 132 ---~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P 182 (372)
+...|+..|.+|-... +..+.+++|.+|.. ..++.+|..+|.++-....
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235777777766655 66677777765543 2367777777777776665
No 280
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.32 Score=44.67 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
.....++=.+|...++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..+...|+.+.+.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 556677778899999999999999999999999999999999999999999999999999999999987753
No 281
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.12 E-value=0.034 Score=49.54 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383 95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (372)
Q Consensus 95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~ 150 (372)
...++++.|.+.|.+++++.|. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4455666666666666666666 5556666666666666666666666666666554
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.98 E-value=0.42 Score=40.44 Aligned_cols=81 Identities=12% Similarity=-0.054 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
+.....+-...++.+++...+...--+.|+ +.+-..-|..++..|+|.+|+..++.+..-.|..+.+-..++.|++.+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 344455555566666666666666556666 5555556666666666666666666666666666666666666666666
Q ss_pred CH
Q 017383 166 KL 167 (372)
Q Consensus 166 ~~ 167 (372)
+.
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 53
No 283
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.97 E-value=0.27 Score=37.53 Aligned_cols=46 Identities=26% Similarity=0.256 Sum_probs=23.0
Q ss_pred HHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383 105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (372)
Q Consensus 105 ~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~ 150 (372)
..+++.++.+|+ ..+.+.+|.+++..|++++|++.+-.+++.++++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344445555554 5555555555555555555555555555555443
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.94 E-value=0.44 Score=49.01 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=90.3
Q ss_pred CCCchhhHHHHHhhhhc---CCCCchHHHHHHHHHHHHHh----h-cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc-
Q 017383 61 YSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQ----K-KFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR- 131 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~---~p~~~~a~~~~~~g~~~~~~----g-~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g- 131 (372)
..|.+.|+.+|..+... .-......+.+.+|.+|.+. . ++..|+.+|.++-.+.. +.+.+.+|.+|..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTK 340 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCc
Confidence 35889999999998771 10111222356889998874 3 78999999999987642 567778888887765
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHccC
Q 017383 132 --RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE 181 (372)
Q Consensus 132 --~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l----g~~~~A~~~~~~al~l~ 181 (372)
++..|..+|..|.. -.+..+++++|.+|..= .+...|..+|.++-..+
T Consensus 341 ~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 67899999999876 46788999999887643 47899999999999988
No 285
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.93 E-value=0.1 Score=54.40 Aligned_cols=107 Identities=11% Similarity=-0.034 Sum_probs=63.2
Q ss_pred CCCCchhhHHHHHhhh----------hcCCCC--------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHH
Q 017383 60 SYSRNYDPVSHISSSL----------MNEEST--------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al----------~~~p~~--------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~ 121 (372)
..+|...|+++|+++- ..+|.. .+...|.-.|..+-..|+.+.|+.+|..|-. |+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~f 942 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YF 942 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hh
Confidence 4567777888887652 222221 1112344557777777888888888777543 33
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
.+-.++.-+|+.++|-...++ ..+-.+.|.+|..|...|++.+|+..|.+|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444455555555443332 4556667777777777777777777666653
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.92 E-value=0.31 Score=39.90 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHh---hcHHHHHHHHHHHHc-cCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383 83 DATSEKELGNECFKQ---KKFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~-~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~ 156 (372)
.....++++.++.+. .+..+.|.+++..++ -.|. -...+.+|..++++++|+.++.++...++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 445567888888754 456789999999997 4555 6777889999999999999999999999999999887654
Q ss_pred HHH
Q 017383 157 RAT 159 (372)
Q Consensus 157 lg~ 159 (372)
.-.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 443
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.90 E-value=0.15 Score=50.14 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=99.2
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
++.||.-.|-.-...+|+..|..+.... ..+.++...|+|+.|......+-.+-.. ..+..-+-....++|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4668888888888889998888777754 5688889999999999887766554433 455555666788999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
....-.+.-.-.+++...--+..-..+|-+++|..++.+++.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99988888777777776666677788999999999999999999753
No 288
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.87 E-value=0.05 Score=34.30 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHcc
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIAL 113 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~ 113 (372)
+.++.++|.+|...|+|++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345789999999999999999999999875
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.81 E-value=0.25 Score=36.42 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
......|.-+|...+.++|+..+.++++..++ ..++-.+..+|...|+|.+.+.+.-+=+.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788889999999999999999998776 455566677888999999988876655443
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.46 Score=42.95 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=85.7
Q ss_pred CC-CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC-HHHHHHHHHH
Q 017383 58 GN-SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT-AVAYANRAMA 126 (372)
Q Consensus 58 ~y-~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~-~~~~~~la~~ 126 (372)
+| ...+|++|..++.++.+...++.. +..+-..|...-....+.++..+|++|..+. |+ +..-...|.=
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 35 567899999999999865544321 2234456677778899999999999999874 44 3333455555
Q ss_pred HHHhcCHHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEALNLDD---RYI---KAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p---~~~---~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
.+..-+.++|+..|++++.+-- ..- ..+-..+.++..+.++++|-..|.+-.
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 6677889999999999987633 233 334446678888899999887776643
No 291
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.79 E-value=0.25 Score=53.43 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=79.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383 90 LGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSRRA 158 (372)
Q Consensus 90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g-------~~~eA~~~~~~Al~l~p~~~~a~~~lg 158 (372)
...++...+.|+.|+..|++.-...|. -.+.+..|.+++..- .+.+|+.-|++. .-.|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 356788899999999999999999997 788899999887663 355566665553 23455566688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 159 TARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
.+|..+|+|++-+.+|.-|++..|+++++-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 999999999999999999999999998874
No 292
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.71 E-value=0.97 Score=42.09 Aligned_cols=116 Identities=17% Similarity=0.030 Sum_probs=85.7
Q ss_pred CCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHh-----h--cHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----
Q 017383 62 SRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQ-----K--KFKEAIDCYSRSIALSPTAVAYANRAMAYLK---- 129 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~-----g--~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~---- 129 (372)
.|+.+|..+|.++....-. . ....+.+|..|..- - +...|+..|.++.... ...+.+++|.+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~--~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV--EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCC
Confidence 3889999999999998733 3 33356777776653 1 3347999999987765 47788888988865
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHccCCC
Q 017383 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---------------KLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg---------------~~~~A~~~~~~al~l~P~ 183 (372)
..++.+|..+|.+|..... ..++++++ ++...| +...|..++..+....+.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 3489999999999999887 88899999 666666 556666666666555443
No 293
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.59 E-value=0.12 Score=51.39 Aligned_cols=91 Identities=16% Similarity=-0.010 Sum_probs=77.6
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~ 134 (372)
+..+....|+..|.+++...|. ..+.+-+++.++++. |+.-.|+.....|+.++|. ..+++.++.++..++++.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~--~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPD--AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccc--hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 4556777899999999999987 555577888888774 5677789999999999998 899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCH
Q 017383 135 EAEDDCTEALNLDDRYI 151 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~ 151 (372)
+|+.+...+....|.+.
T Consensus 463 eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDV 479 (758)
T ss_pred HhhhhHHHHhhcCchhh
Confidence 99999998888888653
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.54 E-value=1 Score=42.80 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C-C------
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D------ 148 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--~-p------ 148 (372)
.+..+...+.++.+.|.++-|...+.++...++. +.+.+..+..+...|+..+|+..+...+.. . .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 4556778999999999999999999999987632 667778899999999999999998888771 1 0
Q ss_pred -------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 149 -------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 149 -------------------------~~~~a~~~lg~~~~~l------g~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
..++++..+|.....+ +..+++...|.+++.++|....++..++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 1156777888887788 8899999999999999998887776655543
No 295
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.94 Score=41.42 Aligned_cols=121 Identities=9% Similarity=0.023 Sum_probs=70.3
Q ss_pred hhhHHHHHhhhhcCCCCchHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH-HHHHHHH
Q 017383 65 YDPVSHISSSLMNEESTPDATSEKELGNECF-KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EAEDDCT 141 (372)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~-eA~~~~~ 141 (372)
.+|+.+-..++.++|-+...+. .+-.++. -..+..+-+++.+..++-+|. -.+|..|-.+.-.+|++. .-++.+.
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~--yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQ--YRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3445555555555555443332 2222222 233455666666666666665 666666666666666655 5566666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 142 ~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.++..+..+..+|..+-.+....+.++.-+.+....|+.+--|..+
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 6666666666666666666666666666666666666665544444
No 296
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.29 E-value=0.91 Score=43.95 Aligned_cols=103 Identities=14% Similarity=0.001 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc----CCC-HHHHHHHHHHHHH---hcCHHHHHHHHHHH-HhcCCCCHH
Q 017383 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTEA-LNLDDRYIK 152 (372)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~----~p~-~~~~~~la~~~~~---~g~~~eA~~~~~~A-l~l~p~~~~ 152 (372)
..+....++=..|....+|+.-+...+..-.+ -++ ..+.+..|.++-+ .|+.++|+..+..+ ....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34444556667788999999888888876655 222 6667788888888 89999999999994 455677899
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCc
Q 017383 153 AYSRRATARKEL---------GKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 153 a~~~lg~~~~~l---------g~~~~A~~~~~~al~l~P~~ 184 (372)
.+..+|.+|..+ ...++|+.+|.++..++|+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 999999988753 34788999999999999754
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.15 E-value=0.81 Score=38.75 Aligned_cols=89 Identities=11% Similarity=-0.049 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~ 196 (372)
...+..+..+-+..++.+++...+....-+.|..+..-..-|..+...|++.+|+..|+.+..-.|..+-+...+.-+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 56677888888899999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred HHHHHHHhh
Q 017383 197 LYEKEVFQK 205 (372)
Q Consensus 197 ~~~~~~~~~ 205 (372)
..+...|..
T Consensus 90 ~~~D~~Wr~ 98 (160)
T PF09613_consen 90 ALGDPSWRR 98 (160)
T ss_pred HcCChHHHH
Confidence 655544443
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.06 E-value=1.5 Score=42.39 Aligned_cols=119 Identities=9% Similarity=0.009 Sum_probs=92.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHH--HHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la--~~~~~~g~~~eA~ 137 (372)
..||-..|...-.++-++-..+.+...+...+..-.-.|+|++|...|+--+. +|....+--+| .--..+|..+-|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 55777778777777664443445666677778888999999999999987664 67633333333 3445789999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
.+.++|-...|.-.-++...-..+...|+++.|+...+....
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999988888887889999999999998876553
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.95 E-value=0.24 Score=38.02 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHhhcHHHHHHHHHHHHccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 95 FKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 95 ~~~g~~~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
.+.|+|..|++.+.+.+..... ..++.++|.++...|++++|+..+++|+++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666665555555543211 233444555555555555555555555544
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.94 E-value=3.8 Score=40.43 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=88.6
Q ss_pred chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHH--HHHHHcc---------CCC----HHHHHHH--HHH
Q 017383 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR--AMA 126 (372)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~--y~~al~~---------~p~----~~~~~~l--a~~ 126 (372)
-+.|+..+..+++..+.+.... --...+-...|.+|+.. +.+.+.+ .|- ...-+.+ |.-
T Consensus 396 dekalnLLk~il~ft~yD~ec~----n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECE----NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 5678888888888776643221 12233444555555432 2233222 221 3333333 445
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~~ 204 (372)
++..|+|.++.-+..-..+.+| .+.+|..+|.++....+|++|..++.. +-|++.-.....++|...+.+-+.+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHLPK 545 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhhhh
Confidence 6788999999999999999999 899999999999999999999999864 4454333345677777777765544
No 301
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.46 Score=43.63 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|-+..|+.+++..++.-|+.+.+-.-++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566788999999999999999999998 8889999999999999999999999999999999877655443
No 302
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.53 E-value=0.22 Score=46.45 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=72.4
Q ss_pred HHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 108 SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 108 ~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~-lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
.++-...|+ +..|...+.-..+.|-|.+--..|..++..+|.+++.|.. .+.-+...++++.+...|.++|+++|.++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 333333454 7777777777777888899999999999999999999987 55678889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017383 186 EIKKQLAEVKSLY 198 (372)
Q Consensus 186 ~~~~~l~~a~~~~ 198 (372)
.+|-.+-+..-.|
T Consensus 177 ~iw~eyfr~El~y 189 (435)
T COG5191 177 RIWIEYFRMELMY 189 (435)
T ss_pred hHHHHHHHHHHHH
Confidence 9886555544433
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.98 E-value=1.8 Score=40.22 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHhhcHHHHHHHHHHHHcc----CCC-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CCC---C------
Q 017383 94 CFKQKKFKEAIDCYSRSIAL----SPT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DDR---Y------ 150 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~----~p~-----~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l----~p~---~------ 150 (372)
..++|+++.|..+|.++-.+ +|+ +..+++.|...+..+ ++++|..++++|+.+ ... .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 36789999999999998664 354 788999999999999 999999999999887 221 1
Q ss_pred -HHHHHHHHHHHHHcCCHHH---HHHHHHHHHccCCCcHHHH
Q 017383 151 -IKAYSRRATARKELGKLKE---SIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 151 -~~a~~~lg~~~~~lg~~~~---A~~~~~~al~l~P~~~~~~ 188 (372)
..++..++.+|...+.++. |....+.+-.-.|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 4557778889988887654 4444444444556655553
No 304
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.85 E-value=0.69 Score=44.70 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKA 153 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--------~~~~a 153 (372)
++..+|..|...|+++.|+.+|.++-....+ ...|.|+-.+-..+|+|..-..+-.+|..--. -.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4678999999999999999999998777665 77888888899999999998888888876520 11345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 154 YSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 154 ~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
...-|.+...+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6667888899999999999987664
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.68 E-value=6.1 Score=34.10 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=85.5
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA 136 (372)
+..++|+.-|...-+..-...-..+....|.+....|+-..|+.+|..+-.-.|. -.+...-|..+...|.|++-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 5666666666665555444334445667888999999999999999998876654 23445557778888999887
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 137 EDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 137 ~~~~~~Al-~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
..-.+..- .-+|--..+.--||.+-.+-|++..|...|.+...
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 65554422 22344456666799999999999999999999876
No 306
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.62 E-value=0.17 Score=31.86 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 152 KAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
.+|..+|.+-...++|+.|+.+|+++|.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777654
No 307
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.57 E-value=0.21 Score=31.47 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
.+|..+|.+-+..++|++|+.+|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777777777765
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.51 E-value=0.56 Score=35.96 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 126 AYLKLRRFQEAEDDCTEALNLDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 126 ~~~~~g~~~eA~~~~~~Al~l~p---------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
-.++.|+|.+|++.+.+.+.... ....++.++|.++...|++++|+..+++++.+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45688999999988888876532 12567888999999999999999999999988643
No 309
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=2.6 Score=41.79 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=90.7
Q ss_pred CCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHh
Q 017383 60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL 130 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~ 130 (372)
.-+-|+.|...|..+++.-.. +-.+.+..++|..|.+.|+-+.--+..+..-..+.+ +.+++..|.-.+..
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999886633 123444568899999988866544443332222211 67788899999999
Q ss_pred cCHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 131 RRFQEAEDDCTEALNLDD-RY-----IKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p-~~-----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
|++.||.....+.+++.. .+ +-.+..+|.+...+|+..++....+-++.+..
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 999999999999998751 11 33456688899999999999999888887753
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.28 E-value=0.54 Score=43.33 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=36.1
Q ss_pred hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHH
Q 017383 67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLK 129 (372)
Q Consensus 67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~~la~~~~~ 129 (372)
|..+|.+|+.+.|.++.+ |+.+|.++...|+.=.|+-+|-+++... |...+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p--~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP--YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH--HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc--ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 456666777777665555 5566666666666666776666666543 335566666665555
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=2.4 Score=38.83 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 017383 95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI 171 (372)
Q Consensus 95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~-~A~ 171 (372)
.+...-..|+..-..+|.++|. -.+|.-|-.|+..++ +..+-+++++..+.-+|.+...|+.+-.+...+|+.. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3444556677777888999997 666666666666555 6777889999999999999999999999999999988 778
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383 172 EDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (372)
Q Consensus 172 ~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (372)
...+.++..+..|-.+|...+=+...|+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~ 161 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFK 161 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHh
Confidence 8999999999999888766666655544
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.14 E-value=4.9 Score=38.29 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=83.2
Q ss_pred chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHH---HHHHHHHHhcCHHHHHHH
Q 017383 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA---NRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~---~la~~~~~~g~~~eA~~~ 139 (372)
.+..+..|++||+.+|.+..... .+-..+.+..+-+.....+++++..+|+ ..+|. ..-...+..-.+......
T Consensus 47 ~E~klsilerAL~~np~~~~L~l--~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLL--GYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45668899999999997555533 3444556667888889999999999997 44443 222222233356677777
Q ss_pred HHHHHhcC-----C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 140 CTEALNLD-----D-------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 140 ~~~Al~l~-----p-------------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
|.++|..- . .....+.+++......|..+.|+..++..++++=
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 77776531 1 1145677888889999999999999999999874
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.01 E-value=1 Score=38.93 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=68.2
Q ss_pred CCCC-CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHH
Q 017383 56 PSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMA 126 (372)
Q Consensus 56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~ 126 (372)
|..| ..||++.|+..|.++........ ....+..+-.+.+..|+|.....+..++-.+... ..+-..-|..
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3445 78999999999999888764432 2334567777888899999999999998776432 3344456888
Q ss_pred HHHhcCHHHHHHHHHHHHhc
Q 017383 127 YLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l 146 (372)
++..++|.+|-..|-.++.-
T Consensus 123 ~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHhchHHHHHHHHHccCcC
Confidence 88999999998888776543
No 314
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.98 E-value=0.63 Score=42.86 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 103 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 103 Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
|..+|.+|+.+.|. ...|+.+|.++...|+.-.|+-+|-+++...--++.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888888 88888888888888888888888888887665567778888777776
No 315
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.17 Score=47.89 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCCC-CCCCCchhhHHHHHhhhhcCC---CC------------c--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC
Q 017383 54 PSPSG-NSYSRNYDPVSHISSSLMNEE---ST------------P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSP 115 (372)
Q Consensus 54 ~~~~~-y~~g~~~~A~~~~~~al~~~p---~~------------~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p 115 (372)
..|+. |..++|..|...|.+++..-. .. . ......+++.+-++.+.+..|+..-..++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 34433 477888888888888775221 00 0 011345677888899999999999999998777
Q ss_pred C-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383 116 T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (372)
Q Consensus 116 ~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~ 167 (372)
. ..+++.+++.+..+.++++|++++..+....|++......+..+.....++
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 7 899999999999999999999999999999999987766666555554443
No 316
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=2.3 Score=39.54 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH--HHHHH-HH--HHH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI--KAYSR-RA--TAR 161 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~--~a~~~-lg--~~~ 161 (372)
...|......|++.+|...|..++..+|. ..+...++.||+..|+.+.|...+.. .|... +.+.. .+ ..+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHH
Confidence 36677889999999999999999999998 89999999999999999998777655 33321 22222 11 222
Q ss_pred HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
.......+ ...+++.+..+|++.++...+....
T Consensus 214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~ 246 (304)
T COG3118 214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQL 246 (304)
T ss_pred HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 23222222 2467778889999988765555443
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.13 E-value=2.9 Score=34.98 Aligned_cols=86 Identities=12% Similarity=-0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
.+.....+-+..+++.++...+...--+.|+.+..-..-|.++...|++.+|+..|+.+..-.+..+-....+.-+....
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444444555667777777766666677777777777777777777777777777777766666666666666665555
Q ss_pred HHHHHh
Q 017383 199 EKEVFQ 204 (372)
Q Consensus 199 ~~~~~~ 204 (372)
+..-|.
T Consensus 92 ~Dp~Wr 97 (153)
T TIGR02561 92 GDAEWH 97 (153)
T ss_pred CChHHH
Confidence 544443
No 318
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.90 E-value=2 Score=42.67 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=73.0
Q ss_pred hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC-HHHHHHHHHHH
Q 017383 66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEA 143 (372)
Q Consensus 66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~-~~eA~~~~~~A 143 (372)
.-...|+.++...+.+... |......+-+.+.|.+--..|.+++...|+ +++|..-|.-.+..+. .+.|...+.++
T Consensus 89 rIv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3467889999888774444 557777677777799999999999999999 9999988888888776 99999999999
Q ss_pred HhcCCCCHHHHH
Q 017383 144 LNLDDRYIKAYS 155 (372)
Q Consensus 144 l~l~p~~~~a~~ 155 (372)
|+.+|+.+..|.
T Consensus 167 LR~npdsp~Lw~ 178 (568)
T KOG2396|consen 167 LRFNPDSPKLWK 178 (568)
T ss_pred hhcCCCChHHHH
Confidence 999999987653
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.35 E-value=0.88 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHccCC
Q 017383 154 YSRRATARKELGKLKESIED--SEFALRLEP 182 (372)
Q Consensus 154 ~~~lg~~~~~lg~~~~A~~~--~~~al~l~P 182 (372)
++.+|-.+...|++++|+.. |+-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44455555555555555555 224444444
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.32 E-value=13 Score=38.73 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=86.9
Q ss_pred hhHHHHHhhhhcCCCC--chHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCC--C-----HHHHHHHHHHHHHhcCHHH
Q 017383 66 DPVSHISSSLMNEEST--PDATSEKELGNECF-KQKKFKEAIDCYSRSIALSP--T-----AVAYANRAMAYLKLRRFQE 135 (372)
Q Consensus 66 ~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p--~-----~~~~~~la~~~~~~g~~~e 135 (372)
.|+.+++-+++..+-. .++.+...+|.+++ ...+++.|..++++++.+.. + ..+.+-++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4677877777422222 36778889999987 67899999999999988773 3 344556788888888777
Q ss_pred HHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccC--CCcHHH
Q 017383 136 AEDDCTEALNLDDR----YIKAYSRRA--TARKELGKLKESIEDSEFALRLE--PQNQEI 187 (372)
Q Consensus 136 A~~~~~~Al~l~p~----~~~a~~~lg--~~~~~lg~~~~A~~~~~~al~l~--P~~~~~ 187 (372)
|...++++++..-+ .....+++- ..+...+++..|+..++....+. .+++.+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 99999999987655 233333332 22223379999999999998877 466555
No 321
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.07 E-value=2.5 Score=45.99 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=88.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHh-------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL 130 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~-------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~ 130 (372)
.-..|++|+..|++.-..-|.-.+. .+.+..|..+..+ ..+.+|+..|++.-. .|. +.-|...|.+|..+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence 5678999999999999888875443 2355777666532 368889888888543 344 77799999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYS-------RRATARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~-------~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
|+|++-++++.-|++..|.++..-. ++-.+.+. +...|....--++.+.|....
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999865433 33322222 223455556666777776543
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.00 E-value=4 Score=34.12 Aligned_cols=81 Identities=12% Similarity=-0.041 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
+.....+-...++.+++...+...--+.|+ +.+-..-|..+...|+|.+|+..++....-.+..+.+.-.++.|++.+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 445555566789999999988888888899 7777788999999999999999999999988888888888999999999
Q ss_pred CH
Q 017383 166 KL 167 (372)
Q Consensus 166 ~~ 167 (372)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 84
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.94 E-value=0.43 Score=27.09 Aligned_cols=16 Identities=38% Similarity=0.169 Sum_probs=6.1
Q ss_pred HHHHHHHHhcCHHHHH
Q 017383 122 NRAMAYLKLRRFQEAE 137 (372)
Q Consensus 122 ~la~~~~~~g~~~eA~ 137 (372)
++|.++..+|++++|+
T Consensus 6 ~la~~~~~~G~~~eA~ 21 (26)
T PF07721_consen 6 ALARALLAQGDPDEAE 21 (26)
T ss_pred HHHHHHHHcCCHHHHH
Confidence 3333333333333333
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.92 E-value=7.9 Score=41.23 Aligned_cols=114 Identities=21% Similarity=0.043 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----IK 152 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-----~~ 152 (372)
...+.......+|.+|..+..++...-+. +....-+|.+....|++++|++.++.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 35577778899999998888887664321 4566778999999999999999999999987654 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHHHHH
Q 017383 153 AYSRRATARKELGKLKESIEDSEFALRL----EPQNQEIKKQLAEVKSLYEKE 201 (372)
Q Consensus 153 a~~~lg~~~~~lg~~~~A~~~~~~al~l----~P~~~~~~~~l~~a~~~~~~~ 201 (372)
++...|.+..-.|++++|..+...+.++ +--+-.++..+.++.-...++
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999999999999999887 333344555555555554444
No 325
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.90 E-value=0.77 Score=44.61 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCCCCCCchhhHHHHHhhhhcCCC--------Cch--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHH
Q 017383 57 SGNSYSRNYDPVSHISSSLMNEES--------TPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA 119 (372)
Q Consensus 57 ~~y~~g~~~~A~~~~~~al~~~p~--------~~~--------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~ 119 (372)
..|.+++|..|..-|..+|++..+ .+. ....-.+..||.+.++-+-|+.+-.++|-++|. ..-
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn 264 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN 264 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence 346677777777777777664322 111 123446788999999999999999999999998 888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
+...|.|+..+.+|.+|-..+.-|.-
T Consensus 265 HLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999887777654
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.90 E-value=7.8 Score=36.89 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=79.4
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHH---HHH---------hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383 68 VSHISSSLMNEESTPDATSEKELGNE---CFK---------QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134 (372)
Q Consensus 68 ~~~~~~al~~~p~~~~a~~~~~~g~~---~~~---------~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~ 134 (372)
...|++.++.+|.+.+++. .+... +.. ..-.+..+..|++||+.+|+ ..++..+=.+..+..+.+
T Consensus 5 ~~el~~~v~~~P~di~~Wl--~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWL--ELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHHhCcccHHHHH--HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 4568889999999766643 43322 221 12256778899999999988 666555555666777888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHccCCC
Q 017383 135 EAEDDCTEALNLDDRYIKAYSRRATAR---KELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 135 eA~~~~~~Al~l~p~~~~a~~~lg~~~---~~lg~~~~A~~~~~~al~l~P~ 183 (372)
+...-+++++..+|++...|..+-... ...-.+......|.++|..-..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 888899999999999887775543322 2334678888888888876554
No 327
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=10 Score=36.88 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=93.2
Q ss_pred hhHHHHHhhhhcCCCCchHHHHHHHHH----------HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC--
Q 017383 66 DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-- 132 (372)
Q Consensus 66 ~A~~~~~~al~~~p~~~~a~~~~~~g~----------~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~-- 132 (372)
+++..=.+.+..+|+...++.+..... -..+..-+++-+.+...+|..+|+ ..+|+.|..++.+.+.
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 466777777888887544443222221 122334567788899999999999 8999999999988774
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQEIKKQLAEVK 195 (372)
Q Consensus 133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~----~~~A~~~~~~al~l~P~~~~~~~~l~~a~ 195 (372)
+..=+..|+++++.||.+..+|..+-.+...... ..+=+++..+++.-++.|-.+|.....+.
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 6888999999999999998888776554443332 45667788888888888887775544443
No 328
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.79 E-value=4.8 Score=39.01 Aligned_cols=124 Identities=13% Similarity=-0.045 Sum_probs=90.3
Q ss_pred CCCCchhhHHHHHhhhh---------c-----CCCCc-------------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 60 SYSRNYDPVSHISSSLM---------N-----EESTP-------------DATSEKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~---------~-----~p~~~-------------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
.+|++..|.+++++||- . +.... -..+++.....+.+.|-|.-|+++..-.+.
T Consensus 52 ~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 52 QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56888888888887763 1 11111 112345566777889999999999999999
Q ss_pred cCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCH---------------HH
Q 017383 113 LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD-----RYIKAYSRRATARKELGKL---------------KE 169 (372)
Q Consensus 113 ~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~lg~~~~~lg~~---------------~~ 169 (372)
+||. ..+++.+-...++.++|+--+..++....... ..+...+.++.++..+++- +.
T Consensus 132 Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~ 211 (360)
T PF04910_consen 132 LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSES 211 (360)
T ss_pred cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhH
Confidence 9997 45566666677788888877877777655211 1235667888999999998 88
Q ss_pred HHHHHHHHHccCCC
Q 017383 170 SIEDSEFALRLEPQ 183 (372)
Q Consensus 170 A~~~~~~al~l~P~ 183 (372)
|...+.+|+...|.
T Consensus 212 A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 212 ADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999999888874
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.70 E-value=5.6 Score=40.93 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=82.8
Q ss_pred CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh----cCHHH
Q 017383 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE 135 (372)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~----g~~~e 135 (372)
++..|+.+|.++-..... ++ .+.+|.++.... ++..|..+|..|.... ...+++++|.||..= .+...
T Consensus 308 d~~~A~~~~~~aA~~g~~--~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP--DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cHHHHHHHHHHHHhcCCc--hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHH
Confidence 778899999999988733 55 558898887655 7889999999997532 277888888888643 47899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcc
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALRL 180 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~l-g~~~~A~~~~~~al~l 180 (372)
|..++.+|...+ .+.+.+.++..+... +.++.+...+...-.+
T Consensus 383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 999999999988 667777777655443 6776666655544443
No 330
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.66 E-value=2 Score=40.00 Aligned_cols=80 Identities=19% Similarity=0.088 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 100 FKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 100 ~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
|..-+...+++++.. ...++..++..+...|+++.++..+++.+.++|-+-.+|..+-.+|...|+...|+..|++.-.
T Consensus 137 f~~WV~~~R~~l~e~-~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 137 FDEWVLEQRRALEEL-FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 555555555544311 1567888999999999999999999999999999999999999999999999999999988766
Q ss_pred c
Q 017383 180 L 180 (372)
Q Consensus 180 l 180 (372)
+
T Consensus 216 ~ 216 (280)
T COG3629 216 T 216 (280)
T ss_pred H
Confidence 4
No 331
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.65 E-value=1.7 Score=45.12 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=78.2
Q ss_pred CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC
Q 017383 54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR 132 (372)
Q Consensus 54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~ 132 (372)
.+.+.| +.|+|+.|.++|.++-.. +..-..|-+.|+|.+|...-.++..-......|...+.-+-..|+
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~----------~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLF----------KDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchh----------HHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence 344456 679999999988776332 233456778999999988877765322226777777877888888
Q ss_pred HHHHHHHHH------HHHhcC-----------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383 133 FQEAEDDCT------EALNLD-----------------DRY-IKAYSRRATARKELGKLKESIEDSEFA 177 (372)
Q Consensus 133 ~~eA~~~~~------~Al~l~-----------------p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~a 177 (372)
|.+|+..|- +|+++. |++ ...+.++|.-+...|++.+|...|-++
T Consensus 840 f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 840 FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 877766542 233321 221 456677888999999999998887665
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.24 E-value=4 Score=39.61 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=27.6
Q ss_pred CCchhhHHHHHhhhhcC-CCC---------chHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNE-EST---------PDATSEKELGNECFKQKKFKEAIDCYSRSI 111 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~-p~~---------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al 111 (372)
..|.++...|..++... |+. .....+..++.++..+|+++.|.+..++||
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666665432 110 022235566677777777766666666665
No 333
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.15 E-value=1.3 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH--HHHhcCC
Q 017383 120 YANRAMAYLKLRRFQEAEDDCT--EALNLDD 148 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~--~Al~l~p 148 (372)
++.+|..+...|++++|+..++ -+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555522 4444443
No 334
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=6.5 Score=38.26 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=91.6
Q ss_pred CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHH-HHHHhc---CHHH
Q 017383 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAM-AYLKLR---RFQE 135 (372)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~-~~~~~g---~~~e 135 (372)
-+++-+.+...+|+.+|+... +|+.+..++.+.+ ++..=+...+++++.||. ..+|..|=. +-.... ...+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~--aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYG--AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 456667888999999999444 4777888887665 478889999999999997 444322222 222222 3677
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHccCCCcHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKE------LGK------LKESIEDSEFALRLEPQNQEIKKQ 190 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~------lg~------~~~A~~~~~~al~l~P~~~~~~~~ 190 (372)
=+++++++|.-++.+..+|+.+..++.. .|+ ...-++.-..|+-.+|++..+|..
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 7899999999999999999999987773 231 345566777778888888877643
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.84 E-value=0.57 Score=26.56 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 017383 152 KAYSRRATARKELGKLKESIEDSE 175 (372)
Q Consensus 152 ~a~~~lg~~~~~lg~~~~A~~~~~ 175 (372)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998875
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.60 E-value=3.8 Score=43.34 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEA----------LNLDDR----------YIKAYSRRATARKELGKLKESIEDSEF 176 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~A----------l~l~p~----------~~~a~~~lg~~~~~lg~~~~A~~~~~~ 176 (372)
-..|++.|.-+...++.+.|+++|+++ |.-+|. +...|.--|..+...|+++.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 567888888888888888899888875 233443 234455567778888999999988887
Q ss_pred HHc
Q 017383 177 ALR 179 (372)
Q Consensus 177 al~ 179 (372)
|-.
T Consensus 938 A~D 940 (1416)
T KOG3617|consen 938 AKD 940 (1416)
T ss_pred hhh
Confidence 754
No 337
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.40 E-value=7.1 Score=28.64 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=16.6
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
|++.+.+++...|+++........+.....+
T Consensus 32 aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 32 AIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 4445556666667766544444444444444
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.38 E-value=3 Score=43.20 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
++.++|..+.....|++|.++|..+-.. .+...|++.+..|++-+... .--|++.+.+-.+|..+...|
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhc
Confidence 4566777777777777777777665322 34455666666665533332 223777777777888888888
Q ss_pred CHHHHHHHHHH
Q 017383 166 KLKESIEDSEF 176 (372)
Q Consensus 166 ~~~~A~~~~~~ 176 (372)
..++|...|-+
T Consensus 867 MC~qAV~a~Lr 877 (1189)
T KOG2041|consen 867 MCDQAVEAYLR 877 (1189)
T ss_pred hHHHHHHHHHh
Confidence 88888887744
No 339
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=3 Score=42.72 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~ 189 (372)
++-|-|.-++++.+|..++++|...+..-|.+ ++....++.||..+.+.+.|.++++.|-+.+|.++-...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34456778899999999999999999876654 677888999999999999999999999999998876543
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.90 E-value=6.8 Score=38.98 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=87.9
Q ss_pred HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383 94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~ 172 (372)
.+..|+.-.|-.....++...|. +..-.-++.++..+|.|+.|..++.-+=..-..-..+..-+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 46789999999999999998887 77777789999999999999998887766655556666666677889999999999
Q ss_pred HHHHHHccCCCcHH----------HHHHHHHHHHHHHHHHHhhh
Q 017383 173 DSEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 173 ~~~~al~l~P~~~~----------~~~~l~~a~~~~~~~~~~~~ 206 (372)
..+-.|.-+-.+++ ..+.++++.-.+++.+...+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 88777755444444 45777888777777655543
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.71 E-value=2.1 Score=39.79 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~ 176 (372)
.+...+..|...|.+.+|+..+++++.++|-+-..+..+-.++..+|+--+|...|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3444567788888888888888888888888888888888888888887777666654
No 342
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.34 E-value=2.6 Score=41.48 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=47.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 91 GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 91 g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
|..+|..|+|.++.-+-.=..+++|.+.+|.-+|.|++...+|.+|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4557899999999999999999999999999999999999999999998865
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.25 E-value=2.9 Score=36.76 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 017383 100 FKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI 171 (372)
Q Consensus 100 ~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~----~~~a~~~lg~~~~~lg~~~~A~ 171 (372)
=+.|...|-++-. .|. +...+.+|..|. ..+.++|+..+.+++++... ++..+..|+.++..+|+++.|-
T Consensus 122 d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456665555432 233 667777776554 56777888888888877543 3777788888888888887774
No 344
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=9 Score=37.30 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHcc-----CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIAL-----SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----DRYIKAY 154 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~-----~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~----p~~~~a~ 154 (372)
.|+.+..+|-..|+...-...+...+.. +.. +.+.+.+=.+|+.-+.|+.|.....++.--. ...+..+
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 4566666777777766655555554443 222 5556667778999999999988877765221 1336667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383 155 SRRATARKELGKLKESIEDSEFALRLEPQNQ 185 (372)
Q Consensus 155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~ 185 (372)
|.+|.+..-.++|..|..+|-+|++..|.+.
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 8899999999999999999999999999854
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.68 E-value=5.8 Score=29.37 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHc
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg---~~~~~lg~~~~A~~~~~~al~ 179 (372)
....|.=++..++..+|+..++++++..++....+..+| .+|...|+|.+.+.+.-.-+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677889999999999999998887766555544 578888999888877554443
No 346
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.65 E-value=5.2 Score=37.99 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCCCchhhHHHHHhhhhcCC-CCchHHHHHHHHHHHH-----HhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCH
Q 017383 60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECF-----KQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRF 133 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~~~~g~~~~-----~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~ 133 (372)
+.+-.++++..+.+++...- ......+ .++.++. ..-+|..-...|+-...+.|++.+-.|++.+..+..=.
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqA--AIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQA--AIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 33445667777777776552 2112211 2233332 24477777778888888888877888888888777767
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 134 QEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 134 ~eA~~~~~~Al~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
..++...+....- -..+...+.-+|..+..+|+.++|...|++++.+.++..+..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 7777776665543 234555667799999999999999999999999999877654
No 347
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.91 E-value=3.4 Score=37.75 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFA 177 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A~~~~~~a 177 (372)
..+...+|.-|+..|+|++|+..++.+....-. ....+..+..|...+|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666777777777777777777776544321 1344556666777777766666554443
No 348
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.88 E-value=6 Score=29.03 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
+..+...|..+-+.|+|.+|+.||+.+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33345667777777888888777666543
No 349
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.66 E-value=3.9 Score=39.71 Aligned_cols=177 Identities=18% Similarity=0.113 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHh
Q 017383 20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQ 97 (372)
Q Consensus 20 ~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~ 97 (372)
..|...+.+.+.+++.-.- +...+.-..+....|+.| ..|+++.|+..|.++-........ ...+.++-.+-.-.
T Consensus 124 ~~a~~~le~L~~eLk~yK~---n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~ 200 (466)
T KOG0686|consen 124 KKAVLKLEKLDNELKSYKD---NLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYM 200 (466)
T ss_pred HHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhh
Confidence 3455555566666655441 111111111113345556 689999999999997766644322 33455666677778
Q ss_pred hcHHHHHHHHHHHHccC-------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHH-
Q 017383 98 KKFKEAIDCYSRSIALS-------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRAT- 159 (372)
Q Consensus 98 g~~~~Ai~~y~~al~~~-------p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~- 159 (372)
|+|..-..+-.+|...- +. +.+...-|.+.+.+++|+.|..++-.+..- .|.+..+|..+..
T Consensus 201 ~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 201 GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 99988888888777651 11 455566678888889999999988776432 3556666655532
Q ss_pred HHHHcCCH---HHHHHHHHHHHccCCCcHHHH-----HHHHHHHHHHH
Q 017383 160 ARKELGKL---KESIEDSEFALRLEPQNQEIK-----KQLAEVKSLYE 199 (372)
Q Consensus 160 ~~~~lg~~---~~A~~~~~~al~l~P~~~~~~-----~~l~~a~~~~~ 199 (372)
+-+...++ -..-..|..-+++.|.-.++. ..++.+...++
T Consensus 281 Atfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~ 328 (466)
T KOG0686|consen 281 ATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLR 328 (466)
T ss_pred ccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHH
Confidence 11111122 233456777888888766553 34444444443
No 350
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.66 E-value=5.8 Score=38.77 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC--HHHHHHHHHHHH--HhcCHHHHHHHHHHHHhc
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT--AVAYANRAMAYL--KLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~--~~~~~~la~~~~--~~g~~~eA~~~~~~Al~l 146 (372)
.+......+..+++.++|..|...+...+.. .+. ...+..++.+|. ..-+|.+|.+.++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344557777888899999999998888874 443 345666655554 445788888888887764
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.53 E-value=3.9 Score=40.11 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccC--------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALS--------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~l 157 (372)
..+..++.-.|||..|+...+.. +++ |. ..+++..|.||+.+++|.+|+..|...+-.--.....++..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34556777899999999987652 222 22 56788999999999999999999998874221111111111
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHccCCC
Q 017383 158 ATARKE-LGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 158 g~~~~~-lg~~~~A~~~~~~al~l~P~ 183 (372)
..-+-. .+..+.....+--++.+.|.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 111111 23445555566666666775
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.48 E-value=3.9 Score=45.17 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=89.5
Q ss_pred CCCCCchhhHHHHHhhhhcCCCC------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--------CCC-HHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLMNEEST------PDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-AVAYANR 123 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--------~p~-~~~~~~l 123 (372)
|.+|++++|+....++.-+.... .....+.+++...+..+....|+..+.+++.+ .|. +....++
T Consensus 984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nl 1063 (1236)
T KOG1839|consen 984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINL 1063 (1236)
T ss_pred hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHH
Confidence 36788999988887766533221 24455668888888888999999999998875 244 6777899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 124 AMAYLKLRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 124 a~~~~~~g~~~eA~~~~~~Al~l~p~--------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
+..+..+++++.|+.+.+.|+.++-. ....+..++.+...+|++..|+...+..+.
T Consensus 1064 e~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1064 ELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 99999999999999999999986422 245566677777777777777666655554
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.34 E-value=13 Score=32.84 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=53.9
Q ss_pred CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHH
Q 017383 63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~ 137 (372)
.-+.|...|-.+-. .|....+...+.+|. |+...+-++|+..|.++|++.+. +.++..++.+|.++|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-TPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcC-CCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33456666554433 334456666667775 44588899999999999998632 889999999999999999885
Q ss_pred H
Q 017383 138 D 138 (372)
Q Consensus 138 ~ 138 (372)
-
T Consensus 199 i 199 (203)
T PF11207_consen 199 I 199 (203)
T ss_pred h
Confidence 3
No 354
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.90 E-value=5.1 Score=44.32 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------C-CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIAL-------S-PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------ 147 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------~-p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~------ 147 (372)
-+..+..++..+...|++++|+..-.++.-+ + |+ ...|.+++...+..++...|+..+.+++.+.
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3445778999999999999999988777654 3 22 7789999999999999999999999998763
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383 148 --DRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 148 --p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
|.-+....+++.++..+++++-|+.+.+.|+.+.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5556667889999999999999999999999854
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.49 E-value=8.3 Score=35.17 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
..+|..|+..|+|++|+.+|+.+...... ..++..+..|+..+|+.+..+..+-+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555555555555555555555433221 34444455555555555555444433
No 356
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=16 Score=37.24 Aligned_cols=104 Identities=20% Similarity=0.048 Sum_probs=78.0
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHH-HHccCCC-HHH------HHHHHHHHHHhc
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR-SIALSPT-AVA------YANRAMAYLKLR 131 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~-al~~~p~-~~~------~~~la~~~~~~g 131 (372)
..++...+.-....++..+|.+..+ +.++|......|....++..+.. +....|+ ... ++.+|.....+|
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPA--VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchH--HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 5677778888899999999986555 55888887777776666666555 7888887 333 233588888899
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
+..++....+++..+.|.++...-.+...+.+.-
T Consensus 157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 157 RTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 9999999999999999999776555555544443
No 357
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=82.96 E-value=17 Score=31.73 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHH-----HhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCC
Q 017383 83 DATSEKELGNECF-----KQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRY 150 (372)
Q Consensus 83 ~a~~~~~~g~~~~-----~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g-------~~~eA~~~~~~Al~l~p~~ 150 (372)
.+...+.+|+.++ ..++...|+++|..+-..+- +.+..++|.++..-. +..+|++++++|..++ +
T Consensus 67 y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~-~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~ 143 (248)
T KOG4014|consen 67 YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI-PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--D 143 (248)
T ss_pred CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--C
Confidence 3444666776554 35678999999999886432 666777777665322 3778999999988764 5
Q ss_pred HHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHccC
Q 017383 151 IKAYSRRATARKEL------------------------GKLKESIEDSEFALRLE 181 (372)
Q Consensus 151 ~~a~~~lg~~~~~l------------------------g~~~~A~~~~~~al~l~ 181 (372)
..+.++|...|..- .+++.|...--+|..++
T Consensus 144 ~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 144 GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 55666666555433 45666766666666664
No 358
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.44 E-value=2.5 Score=41.47 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNLD---------DRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~---------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
+..+..++.-+|+|..|++.++.. .++ +-+...+|..|.+|..+++|.+|+..|..+|.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999887652 222 34567799999999999999999999999874
No 359
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.15 E-value=2.7 Score=39.44 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=66.1
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383 71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN-RAMAYLKLRRFQEAEDDCTEALNLDD 148 (372)
Q Consensus 71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~-la~~~~~~g~~~eA~~~~~~Al~l~p 148 (372)
|.++-...++++..+ ...++...+.|-|.+--..|.+++...|. +++|.. -+.-+...++++.+...+.++++++|
T Consensus 96 ~~R~tnkff~D~k~w--~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKIW--SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 444444555655554 46677777888999999999999999998 777754 45567788999999999999999999
Q ss_pred CCHHHHHH
Q 017383 149 RYIKAYSR 156 (372)
Q Consensus 149 ~~~~a~~~ 156 (372)
+.+..|+.
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 99887653
No 360
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=82.02 E-value=8.6 Score=34.70 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=20.9
Q ss_pred CCCCCchhhHHHHHhhhhcCCCCch
Q 017383 59 NSYSRNYDPVSHISSSLMNEESTPD 83 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~~~ 83 (372)
++.|+|+.|++....+|+.+-..|+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCc
Confidence 4889999999999999997755544
No 361
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.20 E-value=9.1 Score=35.64 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
++..++..+...|+++.++..+++.+..+|- -.+|..+-.+|+..|+...|+..|.+.-.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788889999999999999999999998 888888889999999999999998886543
No 362
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.50 E-value=10 Score=39.41 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=71.2
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHH-HHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELG-NECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g-~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA 136 (372)
.|+|++|...|-.+-+. .++ ..+.+.|+|-.-...++..=.-+.+ ..++.++|..+..+..|++|
T Consensus 747 ~g~feeaek~yld~drr-----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR-----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hcchhHhhhhhhccchh-----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788887777554322 223 2456788888888777765443333 78999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l 191 (372)
.++|...-.. -++..+++.+..|++-. .....-|++.+....+
T Consensus 816 ~~yY~~~~~~--------e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 816 AKYYSYCGDT--------ENQIECLYRLELFGELE----VLARTLPEDSELLPVM 858 (1189)
T ss_pred HHHHHhccch--------HhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHH
Confidence 9999885332 24566777777666533 3334446555544333
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.80 E-value=4.2 Score=26.47 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 155 SRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 155 ~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
+.++.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688889999999999999998884
No 364
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.45 E-value=3.5 Score=37.19 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHHhhcHHHHHHHHHHHHccC---CC----------HHHHHHHHHHHHHhcCHHH-H-HHHHHHHHh-cC-CCC--HHHH
Q 017383 94 CFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQE-A-EDDCTEALN-LD-DRY--IKAY 154 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y~~al~~~---p~----------~~~~~~la~~~~~~g~~~e-A-~~~~~~Al~-l~-p~~--~~a~ 154 (372)
++..|+|+.|+.....||+.+ |. ++-...-+......|+.-+ + ...+..... .+ |+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 578999999999999999975 33 2333444555555565221 1 111222111 11 333 3445
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383 155 SRRATARK---------ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198 (372)
Q Consensus 155 ~~lg~~~~---------~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~ 198 (372)
-..|.++. ..++...|+.++++|+.++|+. -+...+.++.+.+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~l 224 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRL 224 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHH
Confidence 55676663 4568889999999999999874 3445555554443
No 365
>PF13041 PPR_2: PPR repeat family
Probab=78.27 E-value=9.7 Score=24.91 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--CCHHHHHH
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALS--PTAVAYAN 122 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--p~~~~~~~ 122 (372)
...|..+-..|.+.|++++|.+.|++-.+.. |+...|..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3445666677777777777777777776643 55444433
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.19 E-value=28 Score=37.26 Aligned_cols=106 Identities=13% Similarity=-0.026 Sum_probs=78.0
Q ss_pred CCCCchhhHHHHHhhhhcCCC--C-----chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEES--T-----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA 126 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~-----~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~ 126 (372)
...++.+|..+..++...-+. . ..+...-..|.+....|+.+.|+...+.++..-|. ..++...|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 557788877777666542222 1 12223335688889999999999999999998765 7788999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcC----CCCHHH--HHHHHHHHHHcC
Q 017383 127 YLKLRRFQEAEDDCTEALNLD----DRYIKA--YSRRATARKELG 165 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~----p~~~~a--~~~lg~~~~~lg 165 (372)
..-.|++.+|......+.++. --+..+ ....+.++...|
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988873 333333 344577788888
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.70 E-value=14 Score=33.17 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
+++-+...+|+...+.-++-+|.+....+.+=..+.-.|+|++|..-++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4445555555555555555556555555555555555666666666655555555554
No 368
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.47 E-value=13 Score=39.07 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHH------HHcc----CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------
Q 017383 87 EKELGNECFKQKKFKEAIDCYSR------SIAL----SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL-------- 146 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~------al~~----~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-------- 146 (372)
|-..|.+|-+..++++|++||.+ ++++ .|. ..+--..|.-+...|+++.|+..|-.|-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHh
Confidence 44567778888899999999875 4443 243 222334566677778888777766443211
Q ss_pred ----------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383 147 ----------------DDRY-IKAYSRRATARKELGKLKESIEDSEFA 177 (372)
Q Consensus 147 ----------------~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~a 177 (372)
+.+. ...|-..+.-|..+|+|+-|...|.++
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 0111 122334566677778888777776554
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.59 E-value=9.3 Score=33.25 Aligned_cols=48 Identities=23% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383 101 KEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148 (372)
Q Consensus 101 ~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p 148 (372)
+..++..++.+...|++.++.+++.++...|+.++|.....++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444455555555555555555555555555555555555555555
No 370
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=35 Score=33.41 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCchhhHHHHHhhhh--cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC
Q 017383 62 SRNYDPVSHISSSLM--NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (372)
Q Consensus 62 g~~~~A~~~~~~al~--~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~ 116 (372)
+.|+.|-....++.- ...++..+..++.+|.+..-+++|..|.+|+-.|+...|+
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 444444444444431 1112234445555566666666666666666666666664
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.50 E-value=38 Score=33.85 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=24.0
Q ss_pred HHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383 95 FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143 (372)
Q Consensus 95 ~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~A 143 (372)
.+.|+++.|.+.... -++...|..+|...+..|+++-|+.+|+++
T Consensus 329 l~lg~L~~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 455665555544211 112556666666666666666666666654
No 372
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=75.46 E-value=1e+02 Score=31.56 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=48.5
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 72 ~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
++-++.+|.+-++ |+.+-..+..+ -+++....|++.+...|. +.+|.......+..++|+..+..|.++|.
T Consensus 10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5566677774444 44555544444 778888888888877777 66666666666777778777777777765
No 373
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.32 E-value=16 Score=30.36 Aligned_cols=50 Identities=26% Similarity=0.142 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK 166 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~ 166 (372)
.+....++...+..|+|.-|...+..++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666666666666666666665554
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.28 E-value=31 Score=35.92 Aligned_cols=90 Identities=8% Similarity=0.003 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccC-------C---C-----------------HHHHHHHHHHHHHhcCHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALS-------P---T-----------------AVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-------p---~-----------------~~~~~~la~~~~~~g~~~eA~~ 138 (372)
+|..-|......|..+.|..++.+++..- + . ..+++..+.+.+-++++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 45556777777777778877777777631 1 1 1344557888899999999998
Q ss_pred HHHHHHhcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383 139 DCTEALNLD---DR------YIKAYSRRATARKELGKLKESIEDSE 175 (372)
Q Consensus 139 ~~~~Al~l~---p~------~~~a~~~lg~~~~~lg~~~~A~~~~~ 175 (372)
..+.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 888777653 22 37778999999999999999999998
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.97 E-value=5.5 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 121 ANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 121 ~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
+++|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 376
>PF12854 PPR_1: PPR repeat
Probab=74.39 E-value=8.3 Score=23.26 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Q 017383 118 VAYANRAMAYLKLRRFQEAEDDC 140 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~~~~ 140 (372)
..|..+-..|.+.|+.++|++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333334444444444444333
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.54 E-value=1.1e+02 Score=31.33 Aligned_cols=111 Identities=8% Similarity=-0.050 Sum_probs=84.8
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CC-HHHHHHHHHHHHHhcCHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~-~~~~~~la~~~~~~g~~~eA~ 137 (372)
..|++....-.|++++-......+. |...+.-....|+..-|-..+.++.++. |. +.+...-+..--..|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~ef--Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEF--WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHH--HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 5688888888888888777664444 5566666667788888888888888776 44 555555566666778888898
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~ 172 (372)
..+++...-.|+...+-.........+|+.+.+..
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 88888888778888888888888888888888874
No 378
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.24 E-value=23 Score=26.05 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=16.9
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383 169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (372)
Q Consensus 169 ~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~ 201 (372)
+|++.|..+++..|+...-......+...+.++
T Consensus 31 ~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 31 EGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 344556666667776544333344444444444
No 379
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.22 E-value=45 Score=32.52 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHhc--CHHHHHHHHHH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLR--RFQEAEDDCTE 142 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~~~~g--~~~eA~~~~~~ 142 (372)
..++..+++.++|..|...|..++...++ ...+..++.+|.... ++++|...++.
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566889999999999999999987642 556677777776554 78899999985
No 380
>PF12854 PPR_1: PPR repeat
Probab=71.54 E-value=8.4 Score=23.23 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSR 109 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~ 109 (372)
+...|..+-..|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566688899999999999999999875
No 381
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.13 E-value=16 Score=29.58 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
+..+|+..++.+++-.++-+|++|+.+..+ .....|+|.-+..+|+.+=.+.+++-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 447888999999999999999999875221 12244555555555555555555443
No 382
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.03 E-value=38 Score=34.27 Aligned_cols=81 Identities=15% Similarity=0.004 Sum_probs=58.8
Q ss_pred hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
...+.+.......|+ .+......+..+...|+-+.|+..++.++...-. ...++.+|.++..+.+|..|-.++..
T Consensus 251 ~~~~~Ll~~~~~~p~--ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPK--GALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCC--CccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444456665 3434556777788888888899999999882212 66788999999999999999999988
Q ss_pred HHhcCC
Q 017383 143 ALNLDD 148 (372)
Q Consensus 143 Al~l~p 148 (372)
...+..
T Consensus 329 L~desd 334 (546)
T KOG3783|consen 329 LRDESD 334 (546)
T ss_pred HHhhhh
Confidence 877653
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.01 E-value=98 Score=29.67 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------------------
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------------------- 147 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~------------------- 147 (372)
+.+-...++..+-.+-|.....|++++|. +.+|.-+|.- ..--..+|+..+.+|++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 35556677888888889999999999998 7777666542 1122345555555555431
Q ss_pred ----CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 148 ----DRYIKA--YSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 148 ----p~~~~a--~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
..+... -.+++.|-.++|+..+|++.|+...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 112222 34689999999999999999999888777
No 384
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.62 E-value=8.7 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
+...|..+-..|+|++|+.+|..+++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566666677777777777777664
No 385
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.35 E-value=40 Score=27.87 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 118 VAYANRAMAYL-KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 118 ~~~~~la~~~~-~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
.-|..+|.-++ ..|+-++-...+.....-+..++..+..+|.+|..+|+..+|-+.+.+|.+-
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34555565433 4444444444444444445566788888888999999888888888887654
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.26 E-value=10 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383 165 GKLKESIEDSEFALRLEPQNQEIKKQLA 192 (372)
Q Consensus 165 g~~~~A~~~~~~al~l~P~~~~~~~~l~ 192 (372)
|+.+.|...|++++...|.+..++..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566667777777777776666655443
No 387
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.70 E-value=75 Score=27.62 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchH---HHHHHHHHHHHHhhcHHHHHHHHHHHHccC--CC-HHHHHHHHHHHHHhcCH
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDA---TSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a---~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~~g~~ 133 (372)
..|+-..|+..|..+-...+- |.. .+-..-|..+...|-|++-....+. |..+ |- ..+.-.||.+-++-|+|
T Consensus 106 ~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 106 QKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred hcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHHHhHHHHhccch
Confidence 668999999999998776542 222 2233557778899999987766554 3333 33 77778899999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
..|..+|..... |..-+....+++.+...
T Consensus 184 a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 184 AKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 999999999776 65556666666665543
No 388
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=54 Score=33.21 Aligned_cols=67 Identities=16% Similarity=0.011 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCC
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNL---DDR----YIKAYSRRATARKELGK-LKESIEDSEFALRLEPQ 183 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l---~p~----~~~a~~~lg~~~~~lg~-~~~A~~~~~~al~l~P~ 183 (372)
..-+.-+|.++..+|+...|..+|..++.- ..+ .+.|+|.+|..+..+|. ..+|..++.+|-.-..+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 334556677777777777777777776632 111 25677777777777777 77777777777666544
No 389
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.92 E-value=1.4e+02 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC-cHHH
Q 017383 154 YSRRATARKELGKLKESIEDSEFALRLEPQ-NQEI 187 (372)
Q Consensus 154 ~~~lg~~~~~lg~~~~A~~~~~~al~l~P~-~~~~ 187 (372)
+++.-..+...|.+.-|.+++.-.+.++|. ++-+
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 344444455666666666666666666665 4443
No 390
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.68 E-value=1.4e+02 Score=33.05 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------C--------
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----------D-------- 148 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-----------p-------- 148 (372)
...|.-||..|.|+.|.-+|... .-|..+|..+..+|+|..|+...++|-... .
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHh
Confidence 45688888888888887777653 446777888888888888887777764321 0
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 149 ------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 149 ------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
-+++-+-.+-..|...|.+++-+..++.+|-+.-.+-..
T Consensus 1271 CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1271 CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 012223345556777888888888888888777655443
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.19 E-value=50 Score=34.99 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=82.0
Q ss_pred CCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHH---------HHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNEC---------FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK 129 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~---------~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~ 129 (372)
.-||-+.|++..-.+++.+.. .++.++ ..|.+| ...+..+.|+.+|++|.+..|....=.|++..+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~C--l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYC--LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceee--eechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHH
Confidence 347888999988888876532 233322 334443 34567788999999999999985555667777766
Q ss_pred hcC-HHHHHHHHHHHHhcCC------C--CHHHHHHHHH---HHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383 130 LRR-FQEAEDDCTEALNLDD------R--YIKAYSRRAT---ARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190 (372)
Q Consensus 130 ~g~-~~eA~~~~~~Al~l~p------~--~~~a~~~lg~---~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~ 190 (372)
.|+ |+...+.-.-++.++. . ...-|...|. +-...++|.+|+...+..+++.|-.+-...-
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 663 4445554444444431 1 1112222222 2334679999999999999999987655433
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.01 E-value=29 Score=30.06 Aligned_cols=50 Identities=24% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
....++..++.+...| ++..+.+++.++..+|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445566777777777 5888999999999999999999999999999994
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.98 E-value=19 Score=33.64 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA 143 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~A 143 (372)
..+..|...|.+.+|+.+.++++.++|- ...+..+-.++..+|+--.|+..|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3455678899999999999999999997 788888888999999988888777664
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.63 E-value=64 Score=30.27 Aligned_cols=119 Identities=9% Similarity=-0.001 Sum_probs=68.2
Q ss_pred CCCCchhhHHHHHhhhhcCCCC------chHHHHHHHHHHHHHhhcHHHH---HHHHHHHHccCCC---HHHHHHH-HHH
Q 017383 60 SYSRNYDPVSHISSSLMNEEST------PDATSEKELGNECFKQKKFKEA---IDCYSRSIALSPT---AVAYANR-AMA 126 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~------~~a~~~~~~g~~~~~~g~~~~A---i~~y~~al~~~p~---~~~~~~l-a~~ 126 (372)
..+++++|+..|.+.|...-.. ..-....+++..|...|+|..- +...+.++.-... ..+...+ -..
T Consensus 15 ~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf 94 (421)
T COG5159 15 KSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKF 94 (421)
T ss_pred hhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhc
Confidence 4578888888888888762211 1122356788888888877543 3333344433222 2211111 111
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYS------RRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~------~lg~~~~~lg~~~~A~~~~~~al 178 (372)
-.....++.-+..++..++....--..+. .+..+++..|.|.+|+....-.+
T Consensus 95 ~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 95 PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 12234566677777776665443333332 36678889999999998876665
No 395
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.50 E-value=9.8 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHcc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIAL 113 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~ 113 (372)
+...|..+-+.|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566666677777777777776653
No 396
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.97 E-value=11 Score=39.53 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=81.4
Q ss_pred CCCCCchhhHHHHHhhhhcCCCC--chHHHHHHHHHHHH--HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383 59 NSYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECF--KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~--~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~ 133 (372)
+..++|.+|.--|..++.+-|.. ..+..+.+.+.+++ ..|+|..++....-++...|. ..++..++.+|..++++
T Consensus 64 ~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~ 143 (748)
T KOG4151|consen 64 FQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKL 143 (748)
T ss_pred hhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHH
Confidence 35677888877777777777743 23444556665554 678999999999999999999 88889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 017383 134 QEAEDDCTEALNLDDRYIKAYSRRATARKEL 164 (372)
Q Consensus 134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l 164 (372)
+-|+++..-....+|.+..+.-.....+..+
T Consensus 144 d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 144 DLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 9999998888889999966655444444333
No 397
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.92 E-value=25 Score=32.67 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=90.3
Q ss_pred chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHH------HHhcCHHHH
Q 017383 64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY------LKLRRFQEA 136 (372)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~------~~~g~~~eA 136 (372)
.+.-+..+..+++.+|++...+-+...-...+-...|..-+..-.+.++.|+. ...|.-|-.|. +....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 44557788999999999777765555555555556788888888899999986 33333332222 444455666
Q ss_pred HHHHHHHHhcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRR---ATARKELGK------LKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~l---g~~~~~lg~------~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
.++-..+|.-|+.+..||..+ -......|+ +++=+++.-.++-.+|++..+++.+.-.
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 888888999999999999888 333344454 4555666777777889888887655443
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.30 E-value=15 Score=20.89 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383 131 RRFQEAEDDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
|+++.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777788888777777777766553
No 399
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.81 E-value=53 Score=32.47 Aligned_cols=94 Identities=16% Similarity=0.003 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhc------
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRF-------QEAEDDCTEALNL------ 146 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~-------~eA~~~~~~Al~l------ 146 (372)
...+|..+|-.|+|+-|...|+-+..-.-+ +.++-..|.|++..+.. ++...+++.|+..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 678999999999999999999998874422 55666678888777743 2333444443321
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383 147 -----DDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 147 -----~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l 180 (372)
...-..+....+.++...|.+.+|...+-+....
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1122445666677788889888877766665543
No 400
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=65.79 E-value=2 Score=44.01 Aligned_cols=96 Identities=16% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHH--ccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHH--HHhcCCCC-HHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSI--ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTE--ALNLDDRY-IKAYSRRA 158 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al--~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~--Al~l~p~~-~~a~~~lg 158 (372)
.+..-+..++..|++..|...+.+.- .+.+. .......|.+.+..|++..|+..+.. ...+.+.. ...+..++
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHH
Confidence 34455666777777777777776654 23333 44455566777777777777777653 11122222 23344456
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC
Q 017383 159 TARKELGKLKESIEDSEFALRLE 181 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~ 181 (372)
.++...|++-+|...+-..-.+-
T Consensus 106 ~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 106 QAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp -----------------------
T ss_pred HHHHhcCCHHHHHHHHHHHhhhc
Confidence 67777777666666554444433
No 401
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.73 E-value=90 Score=32.87 Aligned_cols=118 Identities=11% Similarity=-0.063 Sum_probs=62.6
Q ss_pred CCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
.|.+.|...+.+......-... ......+|......+...+|..++..+.....+....-.+....+..++++.+..+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 3445555555544332221111 12223333333333225566666666554332322333333344477777776666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
+...-.-..+.....|-+|.++..+|+.++|...|+++..
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6653222234566777788887778888888888888643
No 402
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.28 E-value=28 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~ 201 (372)
|++.|.+++...|+.........++...+.++
T Consensus 34 a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 34 AIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 44455555566665333333344444444443
No 403
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.22 E-value=1.3e+02 Score=28.88 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=64.0
Q ss_pred HHHHhhhhcCCCCchHHH-HHHHHHHHHHhhcHHHHHHHHHHHHcc------------------------------CCC-
Q 017383 69 SHISSSLMNEESTPDATS-EKELGNECFKQKKFKEAIDCYSRSIAL------------------------------SPT- 116 (372)
Q Consensus 69 ~~~~~al~~~p~~~~a~~-~~~~g~~~~~~g~~~~Ai~~y~~al~~------------------------------~p~- 116 (372)
..|+++++.-|+...+.. -.+-|.+++..|+|.+....+..+-.. +|.
T Consensus 42 ~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~ 121 (449)
T COG3014 42 KAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNI 121 (449)
T ss_pred hHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchh
Confidence 345555555554433221 234567777777777665555433211 111
Q ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------------CCCCH-----------HHHHHHH
Q 017383 117 ---AVAYANRAMAYLKLRRFQEAEDDCTEALNL------------------------DDRYI-----------KAYSRRA 158 (372)
Q Consensus 117 ---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l------------------------~p~~~-----------~a~~~lg 158 (372)
..+.+.+|.-|+..++++.|.-.+.+|... +|+.. ..|.++.
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~ 201 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYL 201 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 122334566677777777666666555432 23321 2245556
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383 159 TARKELGKLKESIEDSEFALRLEPQN 184 (372)
Q Consensus 159 ~~~~~lg~~~~A~~~~~~al~l~P~~ 184 (372)
..|..-.++-.+-..|..+|-..|++
T Consensus 202 ~~yea~~~l~npYv~Yl~~lf~a~n~ 227 (449)
T COG3014 202 DKYEAYQGLLNPYVSYLSGLFYALNG 227 (449)
T ss_pred HHHHhhcccchHHHHHHHHHhcccCc
Confidence 66666677777777888888777766
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.64 E-value=1.1e+02 Score=27.53 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=44.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 017383 91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151 (372)
Q Consensus 91 g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~ 151 (372)
...+.+.+...+||...+.-++..|. +.....+=..|.-.|+|++|...|+-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34566777778888888887777776 55555555667777888888888888888887764
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.22 E-value=43 Score=27.78 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 150 ~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
........+......|++.-|......++..+|+|.+++.....+...+..
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 345666778888899999999999999999999999999888888776654
No 406
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=63.06 E-value=1.2e+02 Score=31.20 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKE 163 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-p~~~~a~~~lg~~~~~ 163 (372)
.|......-...|+++...-.|++++--... ...|.+.+.-....|+..-|...+.++.+.. +.-+.....-+..-..
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 3445555566899999999999999976666 8888898888888899999999898888875 5556666666777788
Q ss_pred cCCHHHHHHHHHHHHccCCCcHHH
Q 017383 164 LGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 164 lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
.|++..|...+++...-.|+..++
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhh
Confidence 899999999999999888987665
No 407
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=62.31 E-value=45 Score=33.95 Aligned_cols=71 Identities=7% Similarity=-0.012 Sum_probs=62.4
Q ss_pred HHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 108 SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 108 ~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
++-|+.+|. ...|+.+-.-+..+ -+++....|++.+.-.|..+.+|...........+|+.-...|.+||.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 567888998 88888887766555 999999999999999999999999999889999999999999988885
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.86 E-value=1.1e+02 Score=28.71 Aligned_cols=96 Identities=6% Similarity=0.043 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---H
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVA---YANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---K 152 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~---~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~---~ 152 (372)
.+.++.++|..|.+.++-+.+.++..+.+.-+-. .++ -..+|.+|..+.=.++.++.....++...+.- .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4456677787777777777777777766654322 222 34566666666556666666666665544321 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 153 AYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 153 a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
.-...|.-.....++.+|...+-..+
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11123444455556666666665554
No 409
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.40 E-value=60 Score=22.89 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=6.8
Q ss_pred HHHhcCHHHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTE 142 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~ 142 (372)
+-..|++++|+.+|..
T Consensus 15 ~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 15 ADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHTTSHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 3334444444444433
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.24 E-value=53 Score=33.89 Aligned_cols=18 Identities=22% Similarity=-0.001 Sum_probs=11.9
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 017383 160 ARKELGKLKESIEDSEFA 177 (372)
Q Consensus 160 ~~~~lg~~~~A~~~~~~a 177 (372)
+|...|+++++++.+...
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 566777777777666544
No 411
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.22 E-value=68 Score=23.49 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
.+...|..+-..|+|++|+.+|..+|+
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556666677777777777666554
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.69 E-value=1.5e+02 Score=27.23 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHH----------------ccCCC-HHHHHHHHH-HHHHhcCHHHHHHHH
Q 017383 79 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSPT-AVAYANRAM-AYLKLRRFQEAEDDC 140 (372)
Q Consensus 79 p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al----------------~~~p~-~~~~~~la~-~~~~~g~~~eA~~~~ 140 (372)
+...+...+..+|..|++.|+|.+|..+|-.+- ...|. .+.+..||. .|+.+++...|...+
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344567778899999999999999888773221 11222 444544544 455666666665544
Q ss_pred HHHH
Q 017383 141 TEAL 144 (372)
Q Consensus 141 ~~Al 144 (372)
..-+
T Consensus 165 ~~f~ 168 (260)
T PF04190_consen 165 DTFT 168 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 413
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=58.31 E-value=43 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=13.0
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 170 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
|++.|..++...|+...-......+...+.+
T Consensus 32 a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~R 62 (75)
T cd02656 32 ALDYLLQALKAEKEPKLRKLLRKKVKEYLDR 62 (75)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3344444555555532222333334444444
No 414
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=57.92 E-value=62 Score=22.62 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHH--HHHHHHHHHHhcCHHHHHHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----AVA--YANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~--~~~la~~~~~~g~~~eA~~~ 139 (372)
..|..++..|+|=+|-+.++..-...+. ... ...-|..+.+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5577888999999999999998875543 222 33345566677777777654
No 415
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.53 E-value=1.3e+02 Score=28.63 Aligned_cols=93 Identities=17% Similarity=0.057 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALNL--DDRYIKAY 154 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--~p~~~~a~ 154 (372)
....+|.+|-+.++|..|...+. ++.++.. ...+..+|..|+..++..+|..+..++--+ +..+....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 45678999999999999987764 3444431 567888999999999999999999887433 33443332
Q ss_pred HH----HHHHHHHcCCHHHHHHHHHHHHc
Q 017383 155 SR----RATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 155 ~~----lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
.. .|.++-..|++-+|...|.+...
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34455566777777766665543
No 416
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=57.24 E-value=52 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=7.2
Q ss_pred HHHHHHHHHccCCCc
Q 017383 170 SIEDSEFALRLEPQN 184 (372)
Q Consensus 170 A~~~~~~al~l~P~~ 184 (372)
|++.|..+++..|+.
T Consensus 32 aie~l~~~~k~e~~~ 46 (75)
T cd02678 32 ALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHhhCCCH
Confidence 334444445555643
No 417
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.13 E-value=68 Score=35.33 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 151 IKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 151 ~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
..-|..++..+..+|+|..|.+..++|-.
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44577889999999999999998888744
No 418
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.35 E-value=1.6e+02 Score=30.46 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=51.7
Q ss_pred HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 96 ~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
++...+.+....+.-+..... +...+..|..+-..|..+.|-.+|++.+..+|+ .+++..+.-+...|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 334445555444443322222 555566677777777888888888888877777 56666777777777766666666
Q ss_pred HHHHccCCC
Q 017383 175 EFALRLEPQ 183 (372)
Q Consensus 175 ~~al~l~P~ 183 (372)
. ++.|+
T Consensus 98 ~---~~~~~ 103 (578)
T PRK15490 98 K---KVSNG 103 (578)
T ss_pred H---HhCcc
Confidence 5 44444
No 419
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.46 E-value=50 Score=33.02 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~ 168 (372)
..+..+.+.|..+.|+.. -.++...+.+| +++|+++.|.+.+.. -++...|-++|......|+++
T Consensus 300 ~i~~fL~~~G~~e~AL~~-------~~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQF-------VTDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHTT-HHHHHHH-------SS-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHCCCHHHHHhh-------cCChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHH
Confidence 344445566666655544 33344444444 467777777665432 346667888888888888888
Q ss_pred HHHHHHHHHH
Q 017383 169 ESIEDSEFAL 178 (372)
Q Consensus 169 ~A~~~~~~al 178 (372)
-|..+|+++-
T Consensus 365 lAe~c~~k~~ 374 (443)
T PF04053_consen 365 LAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhhc
Confidence 8888877753
No 420
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=55.41 E-value=29 Score=28.02 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHccCCC
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~ 116 (372)
...+|..+...|++++|..+|-+||...|+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 347899999999999999999999999998
No 421
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.75 E-value=21 Score=26.12 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
+...|...-..|+|++|+.+|..+|+
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445555556666666666666554
No 422
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.75 E-value=22 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
+...|..+-..|+|++|+.+|..+++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455555566777777777666554
No 423
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.46 E-value=61 Score=23.78 Aligned_cols=17 Identities=29% Similarity=0.086 Sum_probs=7.1
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEA 143 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~A 143 (372)
+-+.|+|++|+.+|..+
T Consensus 16 ~D~~g~y~eA~~~Y~~a 32 (76)
T cd02681 16 RDQEGRYSEAVFYYKEA 32 (76)
T ss_pred HHHccCHHHHHHHHHHH
Confidence 33444444444444433
No 424
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.20 E-value=24 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=10.9
Q ss_pred HcCCHHHHHHHHHHHHcc
Q 017383 163 ELGKLKESIEDSEFALRL 180 (372)
Q Consensus 163 ~lg~~~~A~~~~~~al~l 180 (372)
..|+|++|+..|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 556666666666666543
No 425
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.95 E-value=23 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 87 EKELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 87 ~~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
+...|...-..|+|++|+.+|..+++
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666667777777777666654
No 426
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.88 E-value=55 Score=39.03 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=26.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
+...|+|..|..+|+++++.+|+....+.+.-......|.+...+-..
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~ 1506 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHL 1506 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhh
Confidence 344556666666666666666665555555555555555555554433
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=2.1e+02 Score=27.37 Aligned_cols=93 Identities=6% Similarity=0.018 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYS 155 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~---~a~~ 155 (372)
++.+.|..|.+.||-+.|.+.+.+..+..-. .-....+|..|....=..+.++.....++...+.- ..-.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4556677777777777777766665543321 12234455555544444444444444444333221 0111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 017383 156 RRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 156 ~lg~~~~~lg~~~~A~~~~~~al 178 (372)
.-|.-.....++.+|...|-.++
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHc
Confidence 23444444555666655555444
No 428
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.61 E-value=88 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=5.5
Q ss_pred HHHHHHHHccCCC
Q 017383 171 IEDSEFALRLEPQ 183 (372)
Q Consensus 171 ~~~~~~al~l~P~ 183 (372)
++.|..+++..++
T Consensus 33 le~~~~~~k~e~~ 45 (75)
T cd02684 33 LQYFVPALHYETD 45 (75)
T ss_pred HHHHHHHHhhCCC
Confidence 3344444444443
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.28 E-value=1.6e+02 Score=35.43 Aligned_cols=100 Identities=13% Similarity=-0.033 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------------
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------------- 150 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------------- 150 (372)
+..|...|.+..+.|.++.|-.+.-.|.+.. -+.++..+|..+...|+-..|+..++..+.++-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 4567788888888899998888888887765 36778888888999999999999999988664211
Q ss_pred ----HHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCCCc
Q 017383 151 ----IKAYSRRATARKELGKL--KESIEDSEFALRLEPQN 184 (372)
Q Consensus 151 ----~~a~~~lg~~~~~lg~~--~~A~~~~~~al~l~P~~ 184 (372)
..+....+.-....|++ +.-+..|..+..+.|..
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 22334444444455553 24467778888888743
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.04 E-value=2.5e+02 Score=27.44 Aligned_cols=61 Identities=20% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCH-HHHHHHH--HHHHHcCCHHHHHHHHHHHHcc
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNL-DDRYI-KAYSRRA--TARKELGKLKESIEDSEFALRL 180 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l-~p~~~-~a~~~lg--~~~~~lg~~~~A~~~~~~al~l 180 (372)
...++.-++..++|..|...+...+.. .++.. ..+..++ ..+-...++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556666777888888877777764 33322 3344443 3344567777888888777654
No 431
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.95 E-value=48 Score=26.74 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193 (372)
Q Consensus 155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~ 193 (372)
..+|..+...|++++|..+|-.|+.+.|.-.+....|+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 358888888999999999999999999886665554443
No 432
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=50.69 E-value=48 Score=19.20 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383 136 AEDDCTEALNLDDRYIKAYSRRATARKE 163 (372)
Q Consensus 136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~ 163 (372)
.+.....++..+|.+..+|..+-.+...
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3556677777777777777766655544
No 433
>PF13041 PPR_2: PPR repeat family
Probab=50.48 E-value=67 Score=20.74 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l 146 (372)
...|..+=..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 344555555666666666666666665554
No 434
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.16 E-value=81 Score=25.63 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHH----HHcc
Q 017383 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDR---------------YIKAYSRRATARKELGKLKESIEDSEF----ALRL 180 (372)
Q Consensus 120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~lg~~~~A~~~~~~----al~l 180 (372)
+..+|...++.+++-.++-.|++|+.+.-+ .+-..+|+|..+...|+-+=.+.+++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456788888999999999999999876321 144578999999999999989888864 5566
Q ss_pred CCCcH
Q 017383 181 EPQNQ 185 (372)
Q Consensus 181 ~P~~~ 185 (372)
-|.-+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 67544
No 435
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.90 E-value=31 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
...|..+-..|+|++|+.+|..+++
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555566777777777766654
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.90 E-value=2.3e+02 Score=30.93 Aligned_cols=100 Identities=21% Similarity=0.148 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC-----------HHHHHHHHHHHH------------HhcCHHHH--HHHHHH
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT-----------AVAYANRAMAYL------------KLRRFQEA--EDDCTE 142 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------~~~~~~la~~~~------------~~g~~~eA--~~~~~~ 142 (372)
...|.-+...|++.+|+++|+.+|-.-|- +.-+...+.-|+ .....+.+ +..|-.
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 45677788999999999999999875442 222333332221 11234444 334444
Q ss_pred HHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383 143 ALNLDDRYIKAYSRRA-TARKELGKLKESIEDSEFALRLEPQNQEI 187 (372)
Q Consensus 143 Al~l~p~~~~a~~~lg-~~~~~lg~~~~A~~~~~~al~l~P~~~~~ 187 (372)
-..|.|.+.-.-.+.| .++++++++..|.....+.+++.|..+.+
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 4566676654444444 47889999999999999999999987654
No 437
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.73 E-value=30 Score=33.26 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---------HHHHHHHHHHHHHhcCHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDD 139 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---------~~~~~~la~~~~~~g~~~eA~~~ 139 (372)
-+...|+-++.+++|+.|...|..|..+.-. ..+++..|.+++.+++++.++-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999887432 56677778888887777665443
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=90 Score=32.32 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKES 170 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A 170 (372)
..-|..||.+.+..+++..|.+++.+|..+. ..+...+..+|..-...|+..-|
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A 727 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA 727 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchH
Confidence 3445566666666666666666666664432 22333444444444444444444
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.57 E-value=2e+02 Score=27.64 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCC----------
Q 017383 85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRY---------- 150 (372)
Q Consensus 85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-p~~---------- 150 (372)
+.-..++.|..++|+..+|+..++...+-.|- ..++-|+-.+++.+.-|.+....+-+-=.+. |..
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHH
Confidence 34467899999999999999999998887775 5556666666666654443222221111110 222
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383 151 ----------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 151 ----------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
+++-.++|..-.+ ..|++.+.++++.+|+-+...
T Consensus 356 K~RAVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 356 KTRAVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHH
Confidence 2222333332222 258888999999999887654
No 440
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.41 E-value=30 Score=25.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHcc
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIAL 113 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~ 113 (372)
..|..--..|+|++|+.+|..+++.
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3333344456666666666666653
No 441
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=48.36 E-value=33 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIA 112 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~ 112 (372)
...|...-..|+|++|..+|..+|+
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555555777777777666664
No 442
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.26 E-value=32 Score=19.26 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=5.1
Q ss_pred HHHhhcHHHHHHHH
Q 017383 94 CFKQKKFKEAIDCY 107 (372)
Q Consensus 94 ~~~~g~~~~Ai~~y 107 (372)
|.+.|++++|...|
T Consensus 10 ~~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 10 YCKMGQFEEALEVF 23 (31)
T ss_pred HHccchHHHHHHHH
Confidence 33333333333333
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.18 E-value=2.1e+02 Score=25.61 Aligned_cols=101 Identities=13% Similarity=-0.022 Sum_probs=55.7
Q ss_pred hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383 66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEA 143 (372)
Q Consensus 66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~A 143 (372)
.+...|.....+.++ ......|..+...++|++|+.++.. |. .+....+..++...|+...|+.++..
T Consensus 64 ~~~~~Fa~~f~ip~~----~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~- 133 (226)
T PF13934_consen 64 ELAESFARAFGIPPK----YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRA- 133 (226)
T ss_pred cHHHHHHHHhCCCHH----HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHh-
Confidence 445556666655533 2334566667777777777777632 32 22223344555556777777766655
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177 (372)
Q Consensus 144 l~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a 177 (372)
..-.....++....-.+ ...|...+|..+-++.
T Consensus 134 ~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 134 VGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred cCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 33334444444333333 5667777777665543
No 444
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.05 E-value=42 Score=19.61 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.8
Q ss_pred CHHHHHHHHHHH
Q 017383 132 RFQEAEDDCTEA 143 (372)
Q Consensus 132 ~~~eA~~~~~~A 143 (372)
+..+|+.++++|
T Consensus 20 d~~~A~~~~~~A 31 (36)
T smart00671 20 DLEKALEYYKKA 31 (36)
T ss_pred CHHHHHHHHHHH
Confidence 333444444433
No 445
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.65 E-value=55 Score=30.43 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCchhhHHHHHhhhhcCCCCchH--HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHH--H----HHHHHHHHH-hcC
Q 017383 62 SRNYDPVSHISSSLMNEESTPDA--TSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA--Y----ANRAMAYLK-LRR 132 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a--~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~--~----~~la~~~~~-~g~ 132 (372)
.+.++|+.-|++++++.+.-.+- .+++..-.++|++|+|.+-++.|.+.|..-..+.. | .|--.-|.. ..+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 47788999999999988764431 24667778889999999999999998754333111 1 111111221 223
Q ss_pred HHHHHHHHHHHHhc--CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHH
Q 017383 133 FQEAEDDCTEALNL--DDRYIKAY----SRRATARKELGKLKESIEDSEFA 177 (372)
Q Consensus 133 ~~eA~~~~~~Al~l--~p~~~~a~----~~lg~~~~~lg~~~~A~~~~~~a 177 (372)
.+--..+|+..+.. +..+-..| ..+|.+|+..|+|..-...+.+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 33344455555553 22222223 34788888887776655554443
No 446
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.60 E-value=98 Score=30.74 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHccC----CC--------HHHHHHHHHHHHHhcCHH---H-------HHHHHHHH
Q 017383 86 SEKELGNECFKQKKFKEAIDCYSRSIALS----PT--------AVAYANRAMAYLKLRRFQ---E-------AEDDCTEA 143 (372)
Q Consensus 86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~----p~--------~~~~~~la~~~~~~g~~~---e-------A~~~~~~A 143 (372)
.++..|.+++....|.+|+.++-.|=+.. +. +..-..+-.||+.+.+.. . |...|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 46677888899999999998876654432 22 333344567888887632 2 33333322
Q ss_pred H--------hcC-CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 144 L--------NLD-DRY------IKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 144 l--------~l~-p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
. .+. +.. ...+..-|.+.+..|+-++|.++|+.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2 121 121 22344569999999999999999998764
No 447
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.75 E-value=1.2e+02 Score=22.16 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 017383 135 EAEDDCTEALN 145 (372)
Q Consensus 135 eA~~~~~~Al~ 145 (372)
+|+..+.+|++
T Consensus 5 ~A~~l~~~Ave 15 (75)
T cd02677 5 QAAELIRLALE 15 (75)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.67 E-value=1.9e+02 Score=26.57 Aligned_cols=26 Identities=12% Similarity=-0.167 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 149 RYIKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 149 ~~~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
.++..+..+|..+..-|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 46888999999999999999999887
No 449
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.49 E-value=2e+02 Score=29.73 Aligned_cols=19 Identities=11% Similarity=-0.118 Sum_probs=9.2
Q ss_pred CCchhhHHHHHhhhhcCCC
Q 017383 62 SRNYDPVSHISSSLMNEES 80 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~ 80 (372)
|-+..|.+.+.-.+.++|.
T Consensus 356 GC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred CChHHHHHHHHHHhhcCCc
Confidence 3444445555555555544
No 450
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.49 E-value=1.5e+02 Score=31.91 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc
Q 017383 83 DATSEKELGNECFKQKKFKEAIDCYSRSIAL 113 (372)
Q Consensus 83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~ 113 (372)
-+..+...|..+++.|+|++|+..|-++|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4456788999999999999999999999974
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.10 E-value=1.6e+02 Score=23.66 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383 101 KEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALN--LDDRYIKAYSRRATARKELGKLKESIE 172 (372)
Q Consensus 101 ~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~--l~p~~~~a~~~lg~~~~~lg~~~~A~~ 172 (372)
..-...+++++... +. -.-|..+-..|...-+ .+...|..... +.-..+.-|...|..+...|++++|..
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~ 120 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADE 120 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344555555433 22 2223444444444444 66666666554 556778888888999999999999999
Q ss_pred HHHHHH
Q 017383 173 DSEFAL 178 (372)
Q Consensus 173 ~~~~al 178 (372)
.|+.++
T Consensus 121 I~~~Gi 126 (126)
T PF08311_consen 121 IYQLGI 126 (126)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998775
No 452
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.61 E-value=82 Score=31.23 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHccCCC---------HH--------HHHHHHHHH-HHhcCH-----HHHHHHHHHH-
Q 017383 88 KELGNECFKQKKFKEAIDCYSRSIALSPT---------AV--------AYANRAMAY-LKLRRF-----QEAEDDCTEA- 143 (372)
Q Consensus 88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---------~~--------~~~~la~~~-~~~g~~-----~eA~~~~~~A- 143 (372)
...|.-++..|+|.+|+..|+..|..-|- .. --|.+|+.. +..+.. ++..+.++-|
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAA 287 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAA 287 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 35688889999999999999999885322 11 123344322 122221 1221222222
Q ss_pred ----HhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383 144 ----LNLDDRYIKAYSRRAT-ARKELGKLKESIEDSEFALRLEPQNQE 186 (372)
Q Consensus 144 ----l~l~p~~~~a~~~lg~-~~~~lg~~~~A~~~~~~al~l~P~~~~ 186 (372)
..|.|.+...-.+.|+ ..++.++|.-|....++.|++.|....
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 2334544444444443 455789999999999999999997643
No 453
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.23 E-value=61 Score=19.36 Aligned_cols=10 Identities=20% Similarity=-0.007 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 017383 134 QEAEDDCTEA 143 (372)
Q Consensus 134 ~eA~~~~~~A 143 (372)
.+|+.+|++|
T Consensus 25 ~~A~~~~~~A 34 (39)
T PF08238_consen 25 EKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 3333333333
No 454
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.89 E-value=93 Score=29.88 Aligned_cols=123 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCCCchhhHHHHHhhhh-----cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHH
Q 017383 60 SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~-----~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~ 127 (372)
...+..+|...+..|-. ..|....+..=..-|..+....+|.-|-.||-+|++-... ...+-.+=.|-
T Consensus 180 ~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK 259 (411)
T KOG1463|consen 180 ALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK 259 (411)
T ss_pred HHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH
Confidence 45555555555544322 2222223333334577777789999999999999986433 22233333344
Q ss_pred HHhcCHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHccCC
Q 017383 128 LKLRRFQE--AEDDCTEALNLDDRYIKAYSRRATARK--ELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 128 ~~~g~~~e--A~~~~~~Al~l~p~~~~a~~~lg~~~~--~lg~~~~A~~~~~~al~l~P 182 (372)
..++..++ ++-.-..+++.+..+..+.-..+.++. .+.+|+.|+..|..-|..+|
T Consensus 260 IMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 260 IMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 45555554 555666778888888888888877775 45678888888888887776
No 455
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.06 E-value=1.3e+02 Score=23.33 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
...|..-+..|+|..|.+...++-+..+.-.-.|..-+.+-...|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344566667777777777777776654444444444444444444
No 456
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=41.81 E-value=2e+02 Score=26.83 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383 167 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200 (372)
Q Consensus 167 ~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~ 200 (372)
.+.|..++.+|+.++|....+...+-.+-..++.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 4567777777777777776666555555555543
No 457
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=41.39 E-value=2.3e+02 Score=27.25 Aligned_cols=76 Identities=20% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCC------C-HHHHHHHH-HHHHH-------hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383 101 KEAIDCYSRSIALSP------T-AVAYANRA-MAYLK-------LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165 (372)
Q Consensus 101 ~~Ai~~y~~al~~~p------~-~~~~~~la-~~~~~-------~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg 165 (372)
.+.+..|...+.... . .+-+..++ .+++. .+..-+|+..++.++..+|.+......+..+|..+|
T Consensus 152 ~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG 231 (365)
T PF09797_consen 152 QELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG 231 (365)
T ss_pred HHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Confidence 344556666666542 1 33443333 34443 345667899999999999999999999999999999
Q ss_pred CHHHHHHHHHH
Q 017383 166 KLKESIEDSEF 176 (372)
Q Consensus 166 ~~~~A~~~~~~ 176 (372)
-...|...|..
T Consensus 232 ~~~~A~~~~~~ 242 (365)
T PF09797_consen 232 AGSLALEHYES 242 (365)
T ss_pred CHHHHHHHHHh
Confidence 99999888854
No 458
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.31 E-value=61 Score=18.33 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=7.0
Q ss_pred HHHHhcCHHHHHHHHHH
Q 017383 126 AYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 126 ~~~~~g~~~eA~~~~~~ 142 (372)
+|.+.|++++|...|.+
T Consensus 9 ~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 9 GLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 33444444444444433
No 459
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.25 E-value=3.7e+02 Score=27.56 Aligned_cols=89 Identities=12% Similarity=-0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383 89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 168 (372)
Q Consensus 89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~ 168 (372)
.+-.++....+++-....+++.+....+..+|+.++.||... ..++-...+++.++.+-+++.--..++..|.. ++..
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchh
Confidence 333444445555555566777777766677777788888776 44555666777777776666655556665554 6667
Q ss_pred HHHHHHHHHHc
Q 017383 169 ESIEDSEFALR 179 (372)
Q Consensus 169 ~A~~~~~~al~ 179 (372)
.+...|.+++.
T Consensus 149 k~a~~f~Ka~y 159 (711)
T COG1747 149 KAAEFFGKALY 159 (711)
T ss_pred hHHHHHHHHHH
Confidence 77777777663
No 460
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.30 E-value=90 Score=29.09 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=43.7
Q ss_pred HhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 96 KQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 96 ~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
+..+.++|+..|++++++.+. ..++-.+-.+++++|+|++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 456899999999999999986 56677778899999999999999999875
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.47 E-value=2.2e+02 Score=23.63 Aligned_cols=79 Identities=18% Similarity=0.032 Sum_probs=48.1
Q ss_pred CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHH-HHhhcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcCHHHHHH
Q 017383 61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNEC-FKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED 138 (372)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~-~~~g~~~~Ai~~y~~al~~~-p~~~~~~~la~~~~~~g~~~eA~~ 138 (372)
.|+...-+.+|-..=..+ -|.++|.-+ ..+|+-++--..+.....-. +++..+..+|.+|-++|+..+|-+
T Consensus 69 C~NlKrVi~C~~~~n~~s-------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 69 CGNLKRVIECYAKRNKLS-------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp -S-THHHHHHHHHTT----------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hcchHHHHHHHHHhcchH-------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 356666666665542222 144666544 45666665555666655422 349999999999999999999999
Q ss_pred HHHHHHhc
Q 017383 139 DCTEALNL 146 (372)
Q Consensus 139 ~~~~Al~l 146 (372)
.+.+|.+.
T Consensus 142 ll~~ACek 149 (161)
T PF09205_consen 142 LLKEACEK 149 (161)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988764
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.43 E-value=50 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=11.2
Q ss_pred HHHcCCHHHHHHHHHHHHc
Q 017383 161 RKELGKLKESIEDSEFALR 179 (372)
Q Consensus 161 ~~~lg~~~~A~~~~~~al~ 179 (372)
+-..|+.+.|+.+|++++.
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhcCCHHHHHHHHHHHHH
Confidence 3345666666666666654
No 463
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.09 E-value=1.5e+02 Score=23.05 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383 84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 132 (372)
Q Consensus 84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~ 132 (372)
+......|...+..|||..|.+...++-+..+. ...|..-|.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344557888999999999999999999877666 5555555666555554
No 464
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.68 E-value=2e+02 Score=27.77 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=51.2
Q ss_pred HHHHHHHHHccCCC--HHHH--HHHHHHHHHhcCHHHHHHHHHHH---HhcC---------------------------C
Q 017383 103 AIDCYSRSIALSPT--AVAY--ANRAMAYLKLRRFQEAEDDCTEA---LNLD---------------------------D 148 (372)
Q Consensus 103 Ai~~y~~al~~~p~--~~~~--~~la~~~~~~g~~~eA~~~~~~A---l~l~---------------------------p 148 (372)
+-..|+++.+.-|+ ..++ .+-|.+++..|+|.+....+..| .+.+ |
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 34456666666665 3334 45588888889888766555433 2211 1
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 149 RY---IKAYSRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 149 ~~---~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
.. .-..+.+|.-|....+++.|.--|+++.....
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 11 23355678888889999999999988876543
No 465
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.60 E-value=8e+02 Score=31.42 Aligned_cols=177 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCcccccccc-----ccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCC
Q 017383 8 QALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLK-----SAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST 81 (372)
Q Consensus 8 n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~ 81 (372)
|+-|.-++..++-.|...+-...... +.. .+....+..| .......++..|.++.+ .++.
T Consensus 2686 ~~~Dd~~~Wsdl~~WRq~~y~~I~~~-------------~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvAr-kh~l 2751 (3550)
T KOG0889|consen 2686 NVWDDMNQWSDLITWRQHAYSMINKA-------------YLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVAR-KHGL 2751 (3550)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-------------hcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHH-hcCC
Q ss_pred chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc----------------CCC---------HHHHHHHHHHHHHhcCHHHH
Q 017383 82 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL----------------SPT---------AVAYANRAMAYLKLRRFQEA 136 (372)
Q Consensus 82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~----------------~p~---------~~~~~~la~~~~~~g~~~eA 136 (372)
+++-.....+..-.-.+++++|..-+.+-+.. +.+ +..+.-.|+.+.++|++++|
T Consensus 2752 ~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeA 2831 (3550)
T KOG0889|consen 2752 PDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEA 2831 (3550)
T ss_pred hHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchh
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383 137 EDDCTEALNLDDRYIKAYSRRATARKELGK--------LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199 (372)
Q Consensus 137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~--------~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ 199 (372)
-..|..|++++-.-+++|..-|.-....-. -..|+.+|-+|....-+.. ++..++++.-++.
T Consensus 2832 n~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~sk-aRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2832 NKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSK-ARKLIAKVLWLLS 2901 (3550)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHH
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.36 E-value=2.2e+02 Score=22.90 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHHHHHccC--CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017383 102 EAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEAL 144 (372)
Q Consensus 102 ~Ai~~y~~al~~~--p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al 144 (372)
++...|....... -. +..|...|..+...|++++|.+.|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888888777654 33 8889999999999999999999998875
No 467
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.19 E-value=59 Score=24.06 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=7.6
Q ss_pred HhcCHHHHHHHHHHHH
Q 017383 129 KLRRFQEAEDDCTEAL 144 (372)
Q Consensus 129 ~~g~~~eA~~~~~~Al 144 (372)
..|+.++|+.+|++++
T Consensus 20 E~g~~e~Al~~Y~~gi 35 (79)
T cd02679 20 EWGDKEQALAHYRKGL 35 (79)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3345555555544443
No 468
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.11 E-value=63 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKAYSRRATARKELGKLKESIEDS 174 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--------~~~~a~~~lg~~~~~lg~~~~A~~~~ 174 (372)
-+...|.-++.++++++|...|..|..+.. ++..+++..|.+++.+++++.++-.+
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355678888999999999999999988742 34788999999999999988877554
No 469
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.55 E-value=2.4e+02 Score=30.72 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=62.3
Q ss_pred CCCCchhhHHHHHhhhhcCCCC--------chHHHHHHHHHHHH------------HhhcHHHH--HHHHHHHHccCCC-
Q 017383 60 SYSRNYDPVSHISSSLMNEEST--------PDATSEKELGNECF------------KQKKFKEA--IDCYSRSIALSPT- 116 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~--------~~a~~~~~~g~~~~------------~~g~~~~A--i~~y~~al~~~p~- 116 (372)
..|.+.+|++.|..+|-.-|-. .++..+...+..|. ..+..+.+ +..|=--..+.|-
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 5699999999999987533321 23333344443333 23345555 4444444556665
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Q 017383 117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154 (372)
Q Consensus 117 -~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~ 154 (372)
..++..--.++++++++..|-..+.+.+++.|..+.|.
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 44444445588999999999999999999999876654
No 470
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.09 E-value=61 Score=19.55 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHccCCCHHHHH
Q 017383 99 KFKEAIDCYSRSIALSPTAVAYA 121 (372)
Q Consensus 99 ~~~~Ai~~y~~al~~~p~~~~~~ 121 (372)
+++.|...|++.+...|+...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 45566666666666666544443
No 471
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.00 E-value=86 Score=17.84 Aligned_cols=20 Identities=20% Similarity=-0.119 Sum_probs=8.7
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 017383 123 RAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 123 la~~~~~~g~~~eA~~~~~~ 142 (372)
+-.++.+.|+++.|...+..
T Consensus 7 ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444443
No 472
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.37 E-value=2.9e+02 Score=26.64 Aligned_cols=94 Identities=15% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~ 137 (372)
-|+..-..+|+-.....|. +-. -.|.+.......--+.++...+.... .|. ...+..+|..+.++|+.++|.
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV--~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr 385 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVV--TLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEAR 385 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeE--eehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHH
Confidence 3555555666666666654 233 23666666555556666666665544 333 556678999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH
Q 017383 138 DDCTEALNLDDRYIKAYSRRAT 159 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~~~lg~ 159 (372)
..|.+|+.+.++.....+.+..
T Consensus 386 ~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 386 AAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999998776655543
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.31 E-value=2.6e+02 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHccCCCcHHHH
Q 017383 165 GKLKESIEDSEFALRLEPQNQEIK 188 (372)
Q Consensus 165 g~~~~A~~~~~~al~l~P~~~~~~ 188 (372)
...++....+...+.|++....+|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~ 176 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIW 176 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHH
Confidence 345566666666667766543444
No 474
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.39 E-value=79 Score=26.47 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhh-cHHHHHHHHHHHHccCCC
Q 017383 87 EKELGNECFKQK-KFKEAIDCYSRSIALSPT 116 (372)
Q Consensus 87 ~~~~g~~~~~~g-~~~~Ai~~y~~al~~~p~ 116 (372)
...+|..+...| ++.+|..+|-+||...|+
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 347899999999 999999999999999998
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=34.14 E-value=3.9e+02 Score=24.89 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCC-HHHHHHHHHHHHHhcC----------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383 104 IDCYSRSIALSPT-AVAYANRAMAYLKLRR----------------------FQEAEDDCTEALNLDDRYIKAYSRRATA 160 (372)
Q Consensus 104 i~~y~~al~~~p~-~~~~~~la~~~~~~g~----------------------~~eA~~~~~~Al~l~p~~~~a~~~lg~~ 160 (372)
...++.=++..|+ ..++..+|..+....= .+.|..++.+|+.++|..+.++..+-.+
T Consensus 63 ~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 63 LAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3344444455665 5555566665544421 4456666666666666666666666665
Q ss_pred HHHcCCH
Q 017383 161 RKELGKL 167 (372)
Q Consensus 161 ~~~lg~~ 167 (372)
-..+|..
T Consensus 143 s~~fgeP 149 (277)
T PF13226_consen 143 SAYFGEP 149 (277)
T ss_pred HhhcCCc
Confidence 5566654
No 476
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=34.04 E-value=1.5e+02 Score=27.49 Aligned_cols=31 Identities=10% Similarity=-0.175 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383 153 AYSRRATARKELGKLKESIEDSEFALRLEPQ 183 (372)
Q Consensus 153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~ 183 (372)
+.++++..++.+.+|+.|..+|.+|+.+.-+
T Consensus 81 ~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 81 VNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888888888888888888877543
No 477
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=32.91 E-value=59 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL 167 (372)
Q Consensus 133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~ 167 (372)
...|+.++++|.. .+.+..|..+|.++..+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4456667777655 56778899999988888863
No 478
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=32.62 E-value=2.6e+02 Score=22.35 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=23.4
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYS 108 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~ 108 (372)
+.....+.+++..+..++. ....+..+...|.+. +-.+.+.++.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSE--NPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 4556667777777766543 222344555555433 3344455544
No 479
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=31.12 E-value=7.2e+02 Score=27.00 Aligned_cols=118 Identities=13% Similarity=0.023 Sum_probs=76.3
Q ss_pred CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh---cCHHHHH
Q 017383 62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL---RRFQEAE 137 (372)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~---g~~~eA~ 137 (372)
+.-+.-+..++.-+.+++..... +..+-..+++.|++++--..-.+.-++.|. +.+|.+...-...+ ++-.++.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~--~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQ--MVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhcccccchHH--HHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 34455566777777777664444 447777888999988766666666667776 55655544433322 5677888
Q ss_pred HHHHHHHhcCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383 138 DDCTEALNLDDRYIKAY-------SRRATARKELGKLKESIEDSEFALRLEP 182 (372)
Q Consensus 138 ~~~~~Al~l~p~~~~a~-------~~lg~~~~~lg~~~~A~~~~~~al~l~P 182 (372)
..|++|+.-. +.+..| +..+.++...++++.-...|.++|.-..
T Consensus 171 ~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g 221 (881)
T KOG0128|consen 171 ELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLG 221 (881)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhh
Confidence 9999998643 222222 2233344666788889999999986543
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.11 E-value=8.4e+02 Score=27.78 Aligned_cols=133 Identities=15% Similarity=0.046 Sum_probs=79.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCC--------
Q 017383 11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST-------- 81 (372)
Q Consensus 11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~-------- 81 (372)
-++||++-+-.|-..++....-+ .|-+| ..|.-.+|+.+|.+|..-.-..
T Consensus 903 ~lqdy~~llh~wc~vlk~v~rfm---------------------lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~ 961 (1480)
T KOG4521|consen 903 VLQDYLNLLHSWCRVLKPVIRFM---------------------LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVY 961 (1480)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHh---------------------hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHH
Confidence 46788888888877776655544 23334 5677777888887776422110
Q ss_pred -----------------ch-HHHHHHHHHH-HHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHH
Q 017383 82 -----------------PD-ATSEKELGNE-CFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 82 -----------------~~-a~~~~~~g~~-~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~ 137 (372)
+. +.-|+....- +-.-+--+.++.....||+.-|. +..+.+.=.-++.+|.+-+|.
T Consensus 962 ~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy 1041 (1480)
T KOG4521|consen 962 FLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAY 1041 (1480)
T ss_pred HhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHH
Confidence 01 0112333333 33445667778888888876543 555666667778888888886
Q ss_pred HHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH
Q 017383 138 DDCTEALNLDDRY---IKAYSRRATARKELGKLK 168 (372)
Q Consensus 138 ~~~~~Al~l~p~~---~~a~~~lg~~~~~lg~~~ 168 (372)
.. |-.+|+. -.++-.+-.++.+.|+++
T Consensus 1042 ~a----i~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1042 KA----ILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HH----HHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 53 4445653 344556667777777643
No 481
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.60 E-value=38 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCchhHHHHhhcCHHHHHHHHHHHhhh
Q 017383 343 SPNALPQIFKNALSASILIDIVKVVATF 370 (372)
Q Consensus 343 ~p~~l~~~f~~~l~~~~~~~i~~~l~~~ 370 (372)
.|..|-+||+.+|++++|.-|+.-|++.
T Consensus 113 qpaqLL~vlq~tlp~~if~~i~~~l~~~ 140 (143)
T KOG4056|consen 113 QPAQLLQVLQQTLPEAIFAMLLKKLPSA 140 (143)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHHhhcc
No 482
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.35 E-value=1.3e+02 Score=25.21 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383 155 SRRATARKELG-KLKESIEDSEFALRLEPQNQEIKKQLAEV 194 (372)
Q Consensus 155 ~~lg~~~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~a 194 (372)
..+|..+...| ++++|..+|-.||.+.|.-.+..+.|+..
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~t 134 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQT 134 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 35899999999 99999999999999999876666555443
No 483
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=30.28 E-value=63 Score=29.88 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=65.1
Q ss_pred CCCCCCchhhHHHHHhhhhcCCCCchHHHHH--HHHHHHH------HhhcHHHHHHHHHHHHccCCC-------HHHHHH
Q 017383 58 GNSYSRNYDPVSHISSSLMNEESTPDATSEK--ELGNECF------KQKKFKEAIDCYSRSIALSPT-------AVAYAN 122 (372)
Q Consensus 58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~--~~g~~~~------~~g~~~~Ai~~y~~al~~~p~-------~~~~~~ 122 (372)
.|+-.+--.|+..|...+.-.|.+.-+..+. .+-..|+ ..-....|.+..+.||-.... ..+-+.
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~ 84 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFR 84 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhh
Confidence 3556667778889999888888764432211 1222222 233457789999999876532 455677
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383 123 RAMAYLKLRRFQEAEDDCTEALNLDDRY 150 (372)
Q Consensus 123 la~~~~~~g~~~eA~~~~~~Al~l~p~~ 150 (372)
++..|+.+.+|+-|..+|..|+.+.-++
T Consensus 85 ~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 85 YFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999999999998876555
No 484
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.26 E-value=3.1e+02 Score=30.90 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=8.9
Q ss_pred HHHHHHhhcHHHHHHHHHH
Q 017383 91 GNECFKQKKFKEAIDCYSR 109 (372)
Q Consensus 91 g~~~~~~g~~~~Ai~~y~~ 109 (372)
|..|...|+.++|+.+|..
T Consensus 959 al~Ye~~GklekAl~a~~~ 977 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKE 977 (1265)
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3344444555555554443
No 485
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.85 E-value=2.5e+02 Score=26.89 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcCHHHHH
Q 017383 118 VAYANRAMAYLKLRRFQEAE 137 (372)
Q Consensus 118 ~~~~~la~~~~~~g~~~eA~ 137 (372)
.+++..|.-.+..|+|..|-
T Consensus 130 ~~lykyakfqyeCGNY~gAs 149 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGAS 149 (432)
T ss_pred HHHHHHHHHHHhccCcccHH
Confidence 33344444444444444443
No 486
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=29.82 E-value=61 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCchhHHHHhhcCHHHHHHHHHHHh
Q 017383 334 LQARLLKAISPNALPQIFKNALSASILIDIVKVVA 368 (372)
Q Consensus 334 ~~~~yl~~i~p~~l~~~f~~~l~~~~~~~i~~~l~ 368 (372)
.+++|++.++| ..-.-|.+..+|+|+--|-+.+.
T Consensus 2 ~L~~yi~~l~p-e~~~~l~~~~s~ev~e~m~~~v~ 35 (86)
T PF05542_consen 2 DLLQYIQSLKP-ERIQQLSEPASPEVLEAMKQHVS 35 (86)
T ss_pred hHHHHHHHCCH-HHHHHhhccCCHHHHHHHHHHHH
Confidence 47899999999 44555566889999877665543
No 487
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=29.62 E-value=88 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHh
Q 017383 100 FKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR------------FQEAEDDCTEALN 145 (372)
Q Consensus 100 ~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~------------~~eA~~~~~~Al~ 145 (372)
...|+.++.+|..- -.+..|.++|.+++.+|+ |.+|...+.+|-.
T Consensus 334 ~~~Al~yL~kA~d~-ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQDE-DDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-CChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 55677787777652 226677777777777776 4555555555543
No 488
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.33 E-value=2.9e+02 Score=26.50 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=50.4
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHH--HHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383 68 VSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYS--RSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCT 141 (372)
Q Consensus 68 ~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~--~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~ 141 (372)
+.++++-....|+ ....++..+...+..|+|..|-.++- +++--+|+ ...|-.+| .-.-+.+|+.|++++.
T Consensus 115 l~~L~e~ynf~~e--~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 115 LQHLQEHYNFTPE--RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHhcCCCHH--HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHH
Confidence 4445555555555 44557889999999999999988754 44444443 33444444 3445678999999998
Q ss_pred HHHhc
Q 017383 142 EALNL 146 (372)
Q Consensus 142 ~Al~l 146 (372)
+..+.
T Consensus 192 rLre~ 196 (432)
T KOG2758|consen 192 RLREY 196 (432)
T ss_pred HHHHH
Confidence 87653
No 489
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=28.31 E-value=2e+02 Score=29.85 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383 119 AYANRAMAYLKLRRFQEAEDDCTEALNLD 147 (372)
Q Consensus 119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~ 147 (372)
+|...|++.++++++..|..-|.+++++.
T Consensus 589 aW~AWGlA~Lk~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 589 AWHAWGLACLKAENLAAAREKFKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 44444555555555555555555555554
No 490
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.72 E-value=4e+02 Score=27.70 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 017383 126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 203 (372)
Q Consensus 126 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~ 203 (372)
.+-+.+..+.+....+.-+--....+...+..+..+...|..+.|-.+|++.+..+|++.. ++-|+.++++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 90 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEAR----YEYARRLYNTGLA 90 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchH----HHHHHHHHhhhhh
Confidence 3444455666666665555444555667788889999999999999999999999998533 3334444444433
No 491
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=27.69 E-value=1.1e+02 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC
Q 017383 78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT 116 (372)
Q Consensus 78 ~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~ 116 (372)
+|....|..++.-|...-+.|..-+||..|+.|+++-|+
T Consensus 13 d~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 13 DPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred chHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 333346667778888888999999999999999999999
No 492
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=27.63 E-value=3.2e+02 Score=21.80 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383 93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141 (372)
Q Consensus 93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~ 141 (372)
.+...+.....+.+++.++..++. ...+..+..+|.+. +..+.+..+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567889999999999988765 66667777777654 3445555555
No 493
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=26.63 E-value=51 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=26.6
Q ss_pred CHHHHHHHHhh---cCCCchhHHHHh------hcCHHHHHHHHH
Q 017383 331 DHALQARLLKA---ISPNALPQIFKN------ALSASILIDIVK 365 (372)
Q Consensus 331 ~~~~~~~yl~~---i~p~~l~~~f~~------~l~~~~~~~i~~ 365 (372)
+|+..-.||+| |.++....|+.. ..-..+|.|||.
T Consensus 17 ~p~rl~pyLrQ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~ 60 (86)
T cd08809 17 DPSRITPYLRQCKVLNSDDEEQVLNDPSLVIRKRKVGVLLDILQ 60 (86)
T ss_pred CHhhcChHHHHhCCCChhhHHHHHcCcccchHHHHHHHHHHHHH
Confidence 58888899988 778888888876 445567777765
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=26.41 E-value=1.5e+02 Score=30.39 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383 148 DRYIKAYSRRATARKELGKLKESIEDSEFAL 178 (372)
Q Consensus 148 p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al 178 (372)
..+...|..+|-.+++.++|.+|+..+-.+-
T Consensus 315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp T--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777666654
No 495
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=26.15 E-value=4.6e+02 Score=23.13 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=60.9
Q ss_pred CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH-----hh--cHHHHHHHHHHHHccCCCHHHHHHHHHHHH----
Q 017383 60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK-----QK--KFKEAIDCYSRSIALSPTAVAYANRAMAYL---- 128 (372)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~-----~g--~~~~Ai~~y~~al~~~p~~~~~~~la~~~~---- 128 (372)
..++...|+..|..+-..+ ...+...+|.+++. .+ +..+|.++++++-.+.-. .+.++|...|+
T Consensus 85 ~~~~l~~a~r~~~~aC~~n----~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~-~aCf~LS~m~~~g~~ 159 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDAN----IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG-EACFLLSTMYMGGKE 159 (248)
T ss_pred CccCHHHHHHHHHHHhccC----CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc-hHHHHHHHHHhccch
Confidence 3467888999999988865 33336678877764 23 378999999999887543 33333333333
Q ss_pred --------------------HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383 129 --------------------KLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR 161 (372)
Q Consensus 129 --------------------~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~ 161 (372)
-..+.+.|..+.-+|.+++ ++.+..++...|
T Consensus 160 k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 160 KFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred hhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH
Confidence 3355677777777776654 445555555544
No 496
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=26.00 E-value=1.7e+02 Score=30.01 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.6
Q ss_pred HHHHHHHHHccC----CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383 103 AIDCYSRSIALS----PT--AVAYANRAMAYLKLRRFQEAEDDCTEALN 145 (372)
Q Consensus 103 Ai~~y~~al~~~----p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~ 145 (372)
++..|.+||... .+ ...|..+|..|++.++|.+|+..+..|-.
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 566666666542 22 56677789999999999999988877743
No 497
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=25.95 E-value=4.1e+02 Score=30.34 Aligned_cols=81 Identities=21% Similarity=0.128 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHcc----CCC---HHHHHHHHHHHHHhc--------------------CHHHHHHHHHHHHhcCCC--
Q 017383 99 KFKEAIDCYSRSIAL----SPT---AVAYANRAMAYLKLR--------------------RFQEAEDDCTEALNLDDR-- 149 (372)
Q Consensus 99 ~~~~Ai~~y~~al~~----~p~---~~~~~~la~~~~~~g--------------------~~~eA~~~~~~Al~l~p~-- 149 (372)
.+++|+.+|.++... .|. ..+....+..+..+. .-.++..+..+++.+...
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 588999999999733 243 566667777777776 778888888888876543
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383 150 ----YIKAYSRRATARKELGKLKESIEDSEFALR 179 (372)
Q Consensus 150 ----~~~a~~~lg~~~~~lg~~~~A~~~~~~al~ 179 (372)
-...|..++.+|..+|-..++.-.++.++.
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 267788999999999988877777776654
No 498
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.61 E-value=6e+02 Score=24.34 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383 99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142 (372)
Q Consensus 99 ~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~ 142 (372)
..-+|+..++.++..+|. ..+...+..+|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345566777777777776 66666677777777777777776643
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.51 E-value=3.3e+02 Score=21.31 Aligned_cols=36 Identities=11% Similarity=-0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Q 017383 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152 (372)
Q Consensus 117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~ 152 (372)
+..+..+|..|...|+-+.|...|+.--.+.|....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 666777888888888888888888877777777644
No 500
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=6.4e+02 Score=24.43 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=86.4
Q ss_pred CCCCCchhhHHHHHhhhh----cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------CCC--HHHHHHHHHH
Q 017383 59 NSYSRNYDPVSHISSSLM----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMA 126 (372)
Q Consensus 59 y~~g~~~~A~~~~~~al~----~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------~p~--~~~~~~la~~ 126 (372)
|+.++|.+|+......++ ++....-...+.....+|+...+..+|...+.-|--. .|. +.+=..-|..
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 377889999887766654 4433322333456678888888888888777766432 122 3333445777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCC---CCHHHHHH---HHHHHHHcCCHHH--HHHHHHHHHccCCCcHHHH----------
Q 017383 127 YLKLRRFQEAEDDCTEALNLDD---RYIKAYSR---RATARKELGKLKE--SIEDSEFALRLEPQNQEIK---------- 188 (372)
Q Consensus 127 ~~~~g~~~eA~~~~~~Al~l~p---~~~~a~~~---lg~~~~~lg~~~~--A~~~~~~al~l~P~~~~~~---------- 188 (372)
|..-.+|.-|..+|-.|++-.. ++.+|... +-.+-..++..++ ++-.-.-+++....+-++.
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 7777899999999999987532 23444332 2233344555444 3333344555444444442
Q ss_pred --HHHHHHHHHHHHHHHhhh
Q 017383 189 --KQLAEVKSLYEKEVFQKA 206 (372)
Q Consensus 189 --~~l~~a~~~~~~~~~~~~ 206 (372)
..+..|...|...+..++
T Consensus 299 SLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 299 SLKDFEKALADYKKELAEDP 318 (411)
T ss_pred cHHHHHHHHHHhHHHHhcCh
Confidence 445555555555555444
Done!