BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017385
         (372 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2
           PE=3 SV=1
          Length = 513

 Score = 37.7 bits (86), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 323
           H +   M+ A WC HC   K ++  EA KQL+  +         T+  + C   K++G+P
Sbjct: 58  HDVTLVMFYAPWCGHCKTLKPLY-EEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYP 116

Query: 324 TWVI--NGQ 330
           T V+  NG+
Sbjct: 117 TLVVFKNGK 125


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 36.2 bits (82), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 232 LSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFW-CSHCLEQKQ---MFG 287
           L+ SVA ANL  FE E T       + L K       +    FW   H  + +Q   M G
Sbjct: 329 LACSVALANLEVFEEERTLEKLQPKIKLLK-------ERLQEFWELKHVGDVRQLGFMAG 381

Query: 288 SEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319
            E VK     E FP G R G K+A  C +  +
Sbjct: 382 IELVKDKEKGEPFPYGERTGFKVAYKCREKGV 413


>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo
           sapiens GN=MED24 PE=1 SV=1
          Length = 989

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 183 TSALLSFSLFFISLKEFSV---EEIQK---VLGVQLCIASLVVAALSTSYSSIQPLSSSV 236
           T  L SF+  FI+L EF+    EE  K   V  +   I+ L++  ++ +Y S   LS S 
Sbjct: 458 TGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESR 517

Query: 237 AEANLPFFETEITT 250
             A +PFFET + T
Sbjct: 518 TGAEVPFFETWMQT 531


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,661,474
Number of Sequences: 539616
Number of extensions: 5257514
Number of successful extensions: 13048
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 13040
Number of HSP's gapped (non-prelim): 21
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)