Query 017385
Match_columns 372
No_of_seqs 268 out of 669
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 3.9E-28 8.5E-33 213.7 14.8 130 63-198 5-141 (142)
2 PRK14889 VKOR family protein; 99.9 3E-25 6.6E-30 196.1 14.2 128 64-198 10-140 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 1.6E-24 3.4E-29 188.5 12.5 129 64-198 3-137 (137)
4 COG4243 Predicted membrane pro 99.9 6.1E-23 1.3E-27 182.7 12.7 136 60-201 8-150 (156)
5 KOG0190 Protein disulfide isom 99.4 1.1E-13 2.4E-18 143.2 3.8 77 268-353 46-135 (493)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.4 7.5E-13 1.6E-17 112.7 8.3 70 268-346 33-113 (113)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 6.5E-13 1.4E-17 108.1 7.1 79 258-345 10-100 (101)
8 cd02996 PDI_a_ERp44 PDIa famil 99.4 1.2E-12 2.7E-17 107.9 7.5 80 258-346 10-108 (108)
9 PF00085 Thioredoxin: Thioredo 99.3 5.5E-12 1.2E-16 100.8 8.2 71 268-347 21-101 (103)
10 cd02999 PDI_a_ERp44_like PDIa 99.3 4.8E-12 1E-16 104.5 8.0 73 268-346 22-100 (100)
11 cd03002 PDI_a_MPD1_like PDI fa 99.3 4.3E-12 9.2E-17 103.7 7.1 82 259-347 10-109 (109)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 6E-12 1.3E-16 102.6 7.9 70 268-346 23-104 (104)
13 cd03007 PDI_a_ERp29_N PDIa fam 99.3 6E-12 1.3E-16 108.2 7.2 77 268-348 22-114 (116)
14 cd02994 PDI_a_TMX PDIa family, 99.3 8E-12 1.7E-16 101.3 7.6 78 261-347 13-100 (101)
15 cd02956 ybbN ybbN protein fami 99.3 1.7E-11 3.7E-16 98.3 8.2 71 268-347 16-96 (96)
16 TIGR00411 redox_disulf_1 small 99.2 1.8E-11 3.9E-16 95.1 7.1 76 267-348 2-80 (82)
17 PHA02278 thioredoxin-like prot 99.2 5E-11 1.1E-15 99.9 9.0 88 256-345 4-100 (103)
18 cd03065 PDI_b_Calsequestrin_N 99.2 2.6E-11 5.7E-16 104.5 6.5 87 257-350 17-119 (120)
19 cd03005 PDI_a_ERp46 PDIa famil 99.2 3.6E-11 7.9E-16 96.7 6.4 70 268-346 20-102 (102)
20 cd02963 TRX_DnaJ TRX domain, D 99.2 6.4E-11 1.4E-15 99.2 7.7 73 268-348 28-110 (111)
21 PTZ00443 Thioredoxin domain-co 99.2 1.8E-10 3.9E-15 109.1 11.2 75 268-350 56-139 (224)
22 cd02993 PDI_a_APS_reductase PD 99.2 9.4E-11 2E-15 97.4 7.6 71 268-346 25-109 (109)
23 cd02985 TRX_CDSP32 TRX family, 99.1 2.3E-10 5E-15 94.4 9.1 86 257-347 4-100 (103)
24 cd02948 TRX_NDPK TRX domain, T 99.1 2.3E-10 5E-15 94.1 8.7 84 257-348 8-101 (102)
25 cd03001 PDI_a_P5 PDIa family, 99.1 1.9E-10 4.2E-15 92.6 8.0 70 268-346 22-102 (103)
26 cd02998 PDI_a_ERp38 PDIa famil 99.1 1.5E-10 3.4E-15 92.9 6.4 71 268-346 22-105 (105)
27 cd03000 PDI_a_TMX3 PDIa family 99.1 1.5E-10 3.1E-15 95.1 5.7 73 268-349 19-103 (104)
28 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 2.7E-10 5.8E-15 91.5 7.0 69 268-346 22-104 (104)
29 PHA02125 thioredoxin-like prot 99.1 4.2E-10 9.1E-15 88.2 7.5 68 268-345 2-72 (75)
30 PTZ00102 disulphide isomerase; 99.1 5.4E-10 1.2E-14 113.5 9.6 76 267-351 52-139 (477)
31 cd02953 DsbDgamma DsbD gamma f 99.1 4.5E-10 9.7E-15 91.8 7.3 88 258-347 3-104 (104)
32 cd02949 TRX_NTR TRX domain, no 99.0 8.3E-10 1.8E-14 89.6 8.7 84 258-347 4-97 (97)
33 PRK10996 thioredoxin 2; Provis 99.0 8.6E-10 1.9E-14 96.3 9.0 85 258-348 44-137 (139)
34 TIGR02196 GlrX_YruB Glutaredox 99.0 6E-10 1.3E-14 83.6 6.6 73 268-347 2-74 (74)
35 cd02997 PDI_a_PDIR PDIa family 99.0 9.1E-10 2E-14 88.6 8.0 72 268-346 21-104 (104)
36 cd02992 PDI_a_QSOX PDIa family 99.0 6.6E-10 1.4E-14 93.8 7.3 80 258-343 10-109 (114)
37 TIGR01126 pdi_dom protein disu 99.0 9.3E-10 2E-14 87.9 7.5 72 268-348 17-100 (102)
38 KOG4277 Uncharacterized conser 99.0 1.7E-10 3.7E-15 113.2 3.4 74 268-350 47-132 (468)
39 cd02954 DIM1 Dim1 family; Dim1 99.0 1.6E-09 3.5E-14 92.9 8.0 71 268-344 18-95 (114)
40 PRK09381 trxA thioredoxin; Pro 99.0 1.5E-09 3.2E-14 89.3 7.2 74 268-349 25-107 (109)
41 cd02950 TxlA TRX-like protein 99.0 1.6E-09 3.5E-14 95.1 7.6 79 268-350 24-110 (142)
42 cd02984 TRX_PICOT TRX domain, 99.0 3.7E-09 8E-14 84.6 9.0 82 258-346 4-96 (97)
43 cd02947 TRX_family TRX family; 99.0 2.8E-09 6.1E-14 81.6 8.0 74 266-346 12-92 (93)
44 TIGR01068 thioredoxin thioredo 99.0 2.7E-09 5.8E-14 84.7 8.0 85 258-348 5-99 (101)
45 cd02951 SoxW SoxW family; SoxW 98.9 2E-09 4.4E-14 90.9 7.4 92 258-349 5-118 (125)
46 cd02975 PfPDO_like_N Pyrococcu 98.9 2E-09 4.4E-14 90.8 7.3 86 259-350 15-110 (113)
47 PRK00293 dipZ thiol:disulfide 98.9 4.8E-08 1E-12 103.7 19.2 80 268-349 478-569 (571)
48 PTZ00102 disulphide isomerase; 98.9 1.7E-09 3.8E-14 109.8 6.9 92 258-358 366-473 (477)
49 TIGR01130 ER_PDI_fam protein d 98.9 3E-09 6.4E-14 106.6 7.9 75 268-351 22-110 (462)
50 TIGR00424 APS_reduc 5'-adenyly 98.9 2E-09 4.3E-14 111.6 6.7 76 268-349 375-462 (463)
51 KOG0910 Thioredoxin-like prote 98.9 3.1E-09 6.7E-14 95.1 6.7 89 256-350 50-148 (150)
52 TIGR00412 redox_disulf_2 small 98.9 5.1E-09 1.1E-13 82.6 7.2 69 268-346 3-75 (76)
53 cd02961 PDI_a_family Protein D 98.9 6.9E-09 1.5E-13 81.3 7.9 80 258-346 7-101 (101)
54 cd02973 TRX_GRX_like Thioredox 98.9 4E-09 8.7E-14 79.7 6.1 62 268-335 3-66 (67)
55 PLN02309 5'-adenylylsulfate re 98.9 3.8E-09 8.3E-14 109.4 8.0 75 268-349 369-456 (457)
56 cd02962 TMX2 TMX2 family; comp 98.8 3E-08 6.5E-13 88.8 11.6 68 258-331 37-120 (152)
57 PTZ00051 thioredoxin; Provisio 98.8 2.1E-08 4.5E-13 80.5 8.6 79 258-343 10-96 (98)
58 KOG0190 Protein disulfide isom 98.8 3.3E-09 7.2E-14 110.2 4.7 73 268-349 388-472 (493)
59 TIGR02187 GlrX_arch Glutaredox 98.8 1.1E-08 2.3E-13 95.2 6.3 79 265-350 20-111 (215)
60 TIGR01295 PedC_BrcD bacterioci 98.8 3.6E-08 7.7E-13 84.8 8.8 88 259-346 16-120 (122)
61 KOG0191 Thioredoxin/protein di 98.7 9.7E-09 2.1E-13 103.2 5.7 85 258-349 41-133 (383)
62 TIGR02187 GlrX_arch Glutaredox 98.7 2.1E-08 4.5E-13 93.3 7.4 75 266-347 135-213 (215)
63 cd02989 Phd_like_TxnDC9 Phosdu 98.7 4.5E-08 9.7E-13 82.7 8.7 68 258-331 14-87 (113)
64 PLN00410 U5 snRNP protein, DIM 98.7 3.5E-08 7.7E-13 87.7 8.2 88 256-349 11-119 (142)
65 cd02965 HyaE HyaE family; HyaE 98.7 2.2E-08 4.9E-13 85.6 6.5 71 268-344 31-110 (111)
66 cd02957 Phd_like Phosducin (Ph 98.7 1.7E-08 3.7E-13 84.5 5.6 65 268-339 28-98 (113)
67 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 3.9E-08 8.5E-13 80.3 6.9 78 260-343 7-87 (89)
68 COG3118 Thioredoxin domain-con 98.7 2.6E-08 5.6E-13 97.7 6.4 96 248-352 26-132 (304)
69 KOG0907 Thioredoxin [Posttrans 98.7 5.1E-08 1.1E-12 82.4 7.0 73 268-347 25-103 (106)
70 KOG1731 FAD-dependent sulfhydr 98.6 2.7E-08 5.8E-13 104.3 5.3 68 268-342 61-145 (606)
71 PF13098 Thioredoxin_2: Thiore 98.6 2.9E-08 6.4E-13 81.5 4.2 77 268-345 9-111 (112)
72 TIGR02180 GRX_euk Glutaredoxin 98.6 8.4E-08 1.8E-12 74.7 5.8 73 268-343 1-75 (84)
73 TIGR02200 GlrX_actino Glutared 98.5 4.3E-07 9.2E-12 69.4 6.4 72 268-346 2-75 (77)
74 KOG0191 Thioredoxin/protein di 98.4 2.1E-07 4.6E-12 93.6 5.7 76 268-352 166-254 (383)
75 cd02959 ERp19 Endoplasmic reti 98.4 3.7E-07 7.9E-12 77.8 6.0 71 256-331 11-89 (117)
76 cd02986 DLP Dim1 family, Dim1- 98.4 8.5E-07 1.8E-11 76.3 7.4 68 258-331 4-80 (114)
77 cd02976 NrdH NrdH-redoxin (Nrd 98.4 6.5E-07 1.4E-11 67.0 5.9 71 268-345 2-72 (73)
78 cd02982 PDI_b'_family Protein 98.3 8.9E-07 1.9E-11 71.5 5.9 76 268-349 16-102 (103)
79 TIGR01130 ER_PDI_fam protein d 98.3 6.7E-07 1.5E-11 89.7 6.2 75 268-353 368-457 (462)
80 PRK03147 thiol-disulfide oxido 98.3 1.7E-06 3.7E-11 76.2 8.0 94 256-350 53-172 (173)
81 KOG0912 Thiol-disulfide isomer 98.3 4.3E-07 9.3E-12 89.6 3.7 73 269-350 18-106 (375)
82 PHA03050 glutaredoxin; Provisi 98.3 3E-06 6.5E-11 71.8 7.4 85 258-344 5-91 (108)
83 cd03010 TlpA_like_DsbE TlpA-li 98.3 2.9E-06 6.3E-11 71.4 7.2 74 268-342 29-126 (127)
84 PRK11200 grxA glutaredoxin 1; 98.2 1.9E-06 4.1E-11 68.7 5.5 74 267-343 2-79 (85)
85 KOG0908 Thioredoxin-like prote 98.2 1.4E-06 3.1E-11 83.9 5.6 85 259-351 12-107 (288)
86 cd02952 TRP14_like Human TRX-r 98.2 3.4E-06 7.3E-11 72.9 7.2 79 258-337 11-107 (119)
87 cd03419 GRX_GRXh_1_2_like Glut 98.2 2.7E-06 5.8E-11 66.2 5.8 74 268-344 2-75 (82)
88 PRK15412 thiol:disulfide inter 98.2 1.2E-05 2.6E-10 73.2 10.7 83 268-350 72-176 (185)
89 TIGR02190 GlrX-dom Glutaredoxi 98.2 4.2E-06 9.1E-11 66.1 6.6 70 266-345 8-77 (79)
90 PF00462 Glutaredoxin: Glutare 98.2 2.5E-06 5.4E-11 63.6 5.0 59 268-331 1-59 (60)
91 cd02987 Phd_like_Phd Phosducin 98.2 5E-06 1.1E-10 75.8 7.8 57 268-331 87-147 (175)
92 PF13192 Thioredoxin_3: Thiore 98.2 2.9E-06 6.2E-11 66.8 5.1 72 268-347 3-76 (76)
93 cd02955 SSP411 TRX domain, SSP 98.2 7.4E-06 1.6E-10 71.0 7.9 78 254-331 5-93 (124)
94 TIGR02189 GlrX-like_plant Glut 98.2 4.6E-06 9.9E-11 69.3 6.2 79 262-343 4-82 (99)
95 TIGR00385 dsbE periplasmic pro 98.1 4.1E-06 9E-11 75.2 6.3 82 268-350 67-171 (173)
96 cd02066 GRX_family Glutaredoxi 98.1 3.9E-06 8.6E-11 62.2 4.9 69 268-342 2-70 (72)
97 TIGR02740 TraF-like TraF-like 98.1 6E-06 1.3E-10 80.3 7.4 93 257-349 159-263 (271)
98 TIGR02181 GRX_bact Glutaredoxi 98.1 4.7E-06 1E-10 65.1 5.4 71 268-344 1-71 (79)
99 TIGR02183 GRXA Glutaredoxin, G 98.1 4.2E-06 9.1E-11 67.4 5.2 73 268-343 2-78 (86)
100 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 7.9E-06 1.7E-10 68.0 6.3 88 257-345 13-121 (123)
101 TIGR02738 TrbB type-F conjugat 98.1 8.6E-06 1.9E-10 73.0 6.7 85 264-348 50-151 (153)
102 TIGR02194 GlrX_NrdH Glutaredox 98.1 1.1E-05 2.4E-10 62.4 6.3 70 268-344 1-70 (72)
103 cd03418 GRX_GRXb_1_3_like Glut 98.0 1E-05 2.3E-10 62.0 5.9 71 268-344 2-73 (75)
104 cd03027 GRX_DEP Glutaredoxin ( 98.0 6.6E-06 1.4E-10 63.6 4.6 70 268-343 3-72 (73)
105 cd03029 GRX_hybridPRX5 Glutare 98.0 2.3E-05 5.1E-10 60.3 6.7 69 268-346 3-71 (72)
106 PRK14018 trifunctional thiored 98.0 2.4E-05 5.1E-10 82.7 8.6 80 268-347 60-170 (521)
107 cd02988 Phd_like_VIAF Phosduci 98.0 1.9E-05 4.1E-10 73.2 6.9 62 268-338 106-173 (192)
108 TIGR00365 monothiol glutaredox 97.9 2.3E-05 5E-10 64.9 6.6 81 258-344 4-89 (97)
109 COG0695 GrxC Glutaredoxin and 97.9 3.2E-05 6.9E-10 62.0 6.8 73 267-344 2-75 (80)
110 smart00594 UAS UAS domain. 97.9 6.2E-05 1.4E-09 64.2 8.5 97 246-346 9-121 (122)
111 cd01659 TRX_superfamily Thiore 97.9 2.9E-05 6.2E-10 53.7 5.3 58 269-329 2-61 (69)
112 PRK10329 glutaredoxin-like pro 97.9 4.8E-05 1E-09 61.1 7.0 70 268-345 3-72 (81)
113 PRK13728 conjugal transfer pro 97.8 4.2E-05 9E-10 70.7 7.1 88 268-355 73-176 (181)
114 PTZ00062 glutaredoxin; Provisi 97.8 5.5E-05 1.2E-09 71.1 7.8 82 256-352 6-96 (204)
115 cd03009 TryX_like_TryX_NRX Try 97.8 2.3E-05 5.1E-10 66.4 4.7 76 256-331 10-112 (131)
116 PRK10638 glutaredoxin 3; Provi 97.8 4.8E-05 1E-09 60.4 5.4 71 267-343 3-73 (83)
117 cd02958 UAS UAS family; UAS is 97.8 8.8E-05 1.9E-09 62.0 7.2 91 255-349 8-110 (114)
118 cd02964 TryX_like_family Trypa 97.8 3.5E-05 7.7E-10 65.8 4.8 77 255-331 8-112 (132)
119 cd02966 TlpA_like_family TlpA- 97.7 6E-05 1.3E-09 59.6 5.5 68 264-331 19-110 (116)
120 cd03028 GRX_PICOT_like Glutare 97.7 5.6E-05 1.2E-09 61.4 5.2 78 261-344 3-85 (90)
121 PF13899 Thioredoxin_7: Thiore 97.7 9.3E-05 2E-09 58.5 6.2 63 258-327 11-79 (82)
122 cd03023 DsbA_Com1_like DsbA fa 97.7 0.00016 3.5E-09 61.5 7.6 34 312-346 120-153 (154)
123 cd02967 mauD Methylamine utili 97.7 5.3E-05 1.1E-09 62.2 4.4 56 268-326 25-83 (114)
124 COG4232 Thiol:disulfide interc 97.5 0.0014 2.9E-08 69.9 13.9 93 255-349 465-567 (569)
125 TIGR03143 AhpF_homolog putativ 97.5 0.00019 4.1E-09 75.9 6.4 84 255-346 466-554 (555)
126 PF13905 Thioredoxin_8: Thiore 97.4 0.00026 5.7E-09 56.4 5.2 60 268-327 5-88 (95)
127 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.00018 4E-09 65.7 4.0 35 310-345 161-196 (197)
128 cd02960 AGR Anterior Gradient 97.3 0.00066 1.4E-08 59.7 6.8 65 256-327 15-85 (130)
129 PLN02919 haloacid dehalogenase 97.3 0.00044 9.5E-09 78.7 6.8 94 256-349 411-535 (1057)
130 PRK12759 bifunctional gluaredo 97.3 0.00051 1.1E-08 70.5 6.4 67 268-341 4-79 (410)
131 KOG1752 Glutaredoxin and relat 97.1 0.0017 3.8E-08 55.0 7.4 82 259-343 7-88 (104)
132 TIGR02661 MauD methylamine deh 97.1 0.0023 5E-08 58.6 8.7 81 268-348 78-177 (189)
133 PTZ00062 glutaredoxin; Provisi 97.1 0.0016 3.4E-08 61.3 7.0 84 255-344 102-190 (204)
134 PRK15317 alkyl hydroperoxide r 97.1 0.00091 2E-08 70.0 6.0 89 253-349 104-197 (517)
135 PRK11509 hydrogenase-1 operon 97.0 0.001 2.2E-08 58.8 5.2 66 284-355 59-129 (132)
136 PRK10877 protein disulfide iso 97.0 0.0017 3.7E-08 61.8 7.1 38 310-348 191-229 (232)
137 cd03008 TryX_like_RdCVF Trypar 97.0 0.0012 2.6E-08 59.0 5.6 64 268-331 29-125 (146)
138 cd02972 DsbA_family DsbA famil 96.9 0.0023 5E-08 49.5 6.1 66 269-335 2-96 (98)
139 PRK10824 glutaredoxin-4; Provi 96.9 0.0025 5.4E-08 55.0 6.6 81 257-343 6-91 (115)
140 PF08534 Redoxin: Redoxin; In 96.9 0.0026 5.6E-08 54.6 6.1 86 253-338 17-136 (146)
141 COG0526 TrxA Thiol-disulfide i 96.8 0.0021 4.5E-08 49.5 4.6 52 271-327 39-95 (127)
142 TIGR03140 AhpF alkyl hydropero 96.6 0.0029 6.2E-08 66.3 5.9 91 254-349 106-198 (515)
143 KOG0913 Thiol-disulfide isomer 96.6 0.00066 1.4E-08 65.1 0.8 71 268-347 43-123 (248)
144 cd03012 TlpA_like_DipZ_like Tl 96.6 0.0061 1.3E-07 51.5 6.3 32 257-288 16-47 (126)
145 PF13728 TraF: F plasmid trans 96.5 0.01 2.3E-07 56.0 8.4 79 264-344 120-212 (215)
146 PTZ00056 glutathione peroxidas 95.7 0.014 3.1E-07 54.1 4.8 33 256-288 31-63 (199)
147 cd00340 GSH_Peroxidase Glutath 95.5 0.031 6.8E-07 48.9 6.1 32 256-288 14-45 (152)
148 TIGR01626 ytfJ_HI0045 conserve 95.5 0.025 5.5E-07 52.5 5.7 87 260-346 55-176 (184)
149 cd03031 GRX_GRX_like Glutaredo 95.4 0.029 6.2E-07 50.3 5.4 70 268-343 2-81 (147)
150 cd03017 PRX_BCP Peroxiredoxin 95.3 0.051 1.1E-06 45.9 6.5 32 257-288 16-48 (140)
151 cd02969 PRX_like1 Peroxiredoxi 95.2 0.061 1.3E-06 47.7 6.8 75 257-331 17-122 (171)
152 KOG2501 Thioredoxin, nucleored 94.8 0.019 4.2E-07 52.2 2.6 70 262-331 30-128 (157)
153 PLN02399 phospholipid hydroper 94.7 0.065 1.4E-06 51.5 6.0 34 255-288 90-123 (236)
154 PF13462 Thioredoxin_4: Thiore 94.6 0.023 5E-07 49.0 2.4 36 311-347 126-161 (162)
155 cd03060 GST_N_Omega_like GST_N 94.6 0.11 2.4E-06 39.5 5.9 57 269-331 2-59 (71)
156 PF03190 Thioredox_DsbH: Prote 94.5 0.099 2.1E-06 47.9 6.4 73 253-331 26-115 (163)
157 TIGR02540 gpx7 putative glutat 94.2 0.13 2.7E-06 45.1 6.3 30 256-285 14-43 (153)
158 PF00578 AhpC-TSA: AhpC/TSA fa 94.2 0.031 6.6E-07 46.1 2.2 34 255-288 16-50 (124)
159 cd02991 UAS_ETEA UAS family, E 94.2 0.14 3E-06 43.9 6.2 91 255-349 8-112 (116)
160 COG2143 Thioredoxin-related pr 93.9 0.087 1.9E-06 48.3 4.7 77 268-344 46-143 (182)
161 cd02970 PRX_like2 Peroxiredoxi 93.8 0.11 2.4E-06 44.0 5.0 64 257-324 15-84 (149)
162 cd00570 GST_N_family Glutathio 93.2 0.36 7.9E-06 34.4 6.2 59 269-332 2-60 (71)
163 TIGR02739 TraF type-F conjugat 93.1 0.45 9.7E-06 46.5 8.5 79 264-344 150-242 (256)
164 cd03022 DsbA_HCCA_Iso DsbA fam 93.1 0.086 1.9E-06 46.9 3.2 35 311-346 157-191 (192)
165 PF01323 DSBA: DSBA-like thior 93.0 0.083 1.8E-06 47.0 3.0 36 311-347 157-193 (193)
166 PRK00611 putative disulfide ox 92.9 0.5 1.1E-05 42.0 7.8 60 68-133 70-131 (135)
167 cd03014 PRX_Atyp2cys Peroxired 92.4 0.12 2.6E-06 44.1 3.2 47 256-302 18-67 (143)
168 cd03015 PRX_Typ2cys Peroxiredo 92.4 0.35 7.5E-06 43.2 6.2 33 256-288 21-54 (173)
169 PRK13703 conjugal pilus assemb 92.1 0.79 1.7E-05 44.6 8.6 80 264-345 143-236 (248)
170 PRK13190 putative peroxiredoxi 91.9 0.25 5.4E-06 45.9 4.8 98 256-353 19-157 (202)
171 PRK11657 dsbG disulfide isomer 91.8 0.59 1.3E-05 45.1 7.5 37 311-347 209-249 (251)
172 PF14595 Thioredoxin_9: Thiore 91.6 0.13 2.7E-06 45.0 2.4 82 254-340 31-120 (129)
173 cd03051 GST_N_GTT2_like GST_N 91.5 0.48 1E-05 35.3 5.2 61 268-331 1-62 (74)
174 PRK00522 tpx lipid hydroperoxi 91.5 0.19 4E-06 45.1 3.4 65 256-323 36-103 (167)
175 cd03045 GST_N_Delta_Epsilon GS 91.4 0.62 1.3E-05 35.1 5.8 61 268-331 1-61 (74)
176 cd03059 GST_N_SspA GST_N famil 91.2 0.85 1.8E-05 34.2 6.3 58 268-331 1-58 (73)
177 cd03035 ArsC_Yffb Arsenate Red 91.1 0.3 6.4E-06 41.1 4.0 49 268-318 1-49 (105)
178 PLN02412 probable glutathione 91.1 0.27 5.8E-06 44.1 4.0 32 256-287 21-52 (167)
179 PRK03113 putative disulfide ox 90.6 1.3 2.7E-05 39.6 7.7 63 66-133 69-135 (139)
180 cd02977 ArsC_family Arsenate R 90.4 0.37 8.1E-06 39.8 4.0 49 268-318 1-49 (105)
181 cd03024 DsbA_FrnE DsbA family, 90.2 0.3 6.5E-06 44.0 3.6 36 311-346 165-200 (201)
182 cd03018 PRX_AhpE_like Peroxire 90.2 0.45 9.8E-06 40.6 4.5 34 255-288 18-53 (149)
183 PF06110 DUF953: Eukaryotic pr 89.8 0.2 4.3E-06 43.6 1.9 53 272-327 34-95 (119)
184 cd03036 ArsC_like Arsenate Red 89.8 0.51 1.1E-05 39.8 4.4 30 268-300 1-30 (111)
185 cd03037 GST_N_GRX2 GST_N famil 89.6 1.2 2.5E-05 33.7 5.9 57 268-331 1-58 (71)
186 PRK10382 alkyl hydroperoxide r 89.5 0.75 1.6E-05 42.5 5.6 99 255-353 22-159 (187)
187 cd03016 PRX_1cys Peroxiredoxin 88.1 0.8 1.7E-05 42.4 4.9 97 257-353 17-157 (203)
188 PF13417 GST_N_3: Glutathione 87.5 2.4 5.1E-05 32.6 6.4 57 270-332 1-57 (75)
189 TIGR01617 arsC_related transcr 87.0 0.84 1.8E-05 38.6 4.0 62 268-332 1-63 (117)
190 PF05768 DUF836: Glutaredoxin- 87.0 2.1 4.6E-05 33.9 6.1 70 268-346 2-80 (81)
191 cd03055 GST_N_Omega GST_N fami 86.9 2.7 5.8E-05 33.6 6.7 58 268-331 19-77 (89)
192 PRK01655 spxA transcriptional 85.2 1.2 2.6E-05 38.8 4.1 49 268-318 2-50 (131)
193 cd03019 DsbA_DsbA DsbA family, 85.1 0.78 1.7E-05 40.2 2.9 29 311-340 133-161 (178)
194 cd03056 GST_N_4 GST_N family, 84.2 3.8 8.3E-05 30.4 6.0 60 269-331 2-61 (73)
195 cd03040 GST_N_mPGES2 GST_N fam 83.8 3.4 7.3E-05 31.5 5.7 51 268-328 2-54 (77)
196 PRK13189 peroxiredoxin; Provis 83.7 1.6 3.5E-05 41.3 4.5 95 257-351 27-164 (222)
197 COG1651 DsbG Protein-disulfide 83.5 0.98 2.1E-05 42.3 3.0 38 310-348 204-241 (244)
198 cd03032 ArsC_Spx Arsenate Redu 83.4 1.6 3.5E-05 36.8 4.1 49 268-318 2-50 (115)
199 PTZ00253 tryparedoxin peroxida 83.0 1.8 4E-05 39.8 4.5 95 256-350 28-164 (199)
200 PRK09437 bcp thioredoxin-depen 82.9 1.6 3.4E-05 37.9 3.9 61 256-319 22-87 (154)
201 PTZ00256 glutathione peroxidas 81.8 1 2.2E-05 40.9 2.4 33 255-288 31-65 (183)
202 cd03041 GST_N_2GST_N GST_N fam 81.8 3.6 7.8E-05 31.8 5.2 54 268-328 2-57 (77)
203 PRK15000 peroxidase; Provision 81.5 2.2 4.9E-05 39.6 4.6 97 256-352 25-164 (200)
204 KOG0914 Thioredoxin-like prote 81.3 8.9 0.00019 37.3 8.5 70 256-331 136-217 (265)
205 cd02968 SCO SCO (an acronym fo 80.9 2.1 4.5E-05 36.1 3.9 32 257-288 15-47 (142)
206 PRK10606 btuE putative glutath 80.8 2.4 5.2E-05 39.2 4.5 75 256-331 17-103 (183)
207 PRK13599 putative peroxiredoxi 80.6 4 8.7E-05 38.5 6.0 85 269-353 34-159 (215)
208 PRK12559 transcriptional regul 80.1 2.3 5.1E-05 37.1 4.0 34 268-302 2-35 (131)
209 PRK04388 disulfide bond format 79.2 10 0.00022 34.6 8.0 62 68-133 78-161 (172)
210 cd02971 PRX_family Peroxiredox 77.9 3 6.6E-05 34.9 3.9 35 268-302 26-65 (140)
211 PRK01749 disulfide bond format 75.9 16 0.00034 33.6 8.2 58 69-130 81-158 (176)
212 COG2761 FrnE Predicted dithiol 74.0 2.6 5.6E-05 40.6 2.7 42 313-354 176-217 (225)
213 COG3019 Predicted metal-bindin 73.1 4.8 0.0001 36.4 3.9 76 268-349 28-103 (149)
214 KOG3425 Uncharacterized conser 73.1 3.4 7.3E-05 36.5 2.9 53 274-327 43-101 (128)
215 PRK10954 periplasmic protein d 72.8 3.3 7.1E-05 38.3 3.0 21 312-332 158-178 (207)
216 PRK02110 disulfide bond format 72.8 22 0.00048 32.4 8.4 60 68-132 79-159 (169)
217 cd03019 DsbA_DsbA DsbA family, 72.0 3.1 6.7E-05 36.3 2.5 22 268-289 19-40 (178)
218 PRK13344 spxA transcriptional 71.3 7.2 0.00016 34.1 4.7 49 268-318 2-50 (132)
219 PTZ00137 2-Cys peroxiredoxin; 69.8 20 0.00043 35.2 7.8 99 255-353 88-228 (261)
220 PF13462 Thioredoxin_4: Thiore 69.5 4.7 0.0001 34.5 3.1 21 268-288 16-36 (162)
221 TIGR03137 AhpC peroxiredoxin. 68.7 3.2 6.9E-05 37.9 1.9 95 256-350 23-156 (187)
222 cd03033 ArsC_15kD Arsenate Red 68.2 8.2 0.00018 32.9 4.3 50 268-319 2-51 (113)
223 TIGR01598 holin_phiLC3 holin, 67.7 24 0.00053 28.7 6.6 37 194-231 28-64 (78)
224 PF07098 DUF1360: Protein of u 66.5 13 0.00028 31.8 5.1 19 177-195 59-77 (105)
225 PRK10954 periplasmic protein d 62.6 6.8 0.00015 36.2 2.9 19 268-286 41-59 (207)
226 COG4545 Glutaredoxin-related p 61.7 13 0.00027 30.5 3.9 65 269-335 5-78 (85)
227 KOG0911 Glutaredoxin-related p 61.0 5 0.00011 38.7 1.7 55 268-328 21-77 (227)
228 cd03058 GST_N_Tau GST_N family 60.5 37 0.0008 25.5 6.2 59 268-332 1-60 (74)
229 COG5494 Predicted thioredoxin/ 53.6 35 0.00076 33.1 6.0 90 263-360 8-98 (265)
230 PLN02412 probable glutathione 51.5 33 0.00071 30.6 5.3 99 249-349 44-163 (167)
231 PRK02110 disulfide bond format 49.8 1E+02 0.0023 28.0 8.4 28 166-194 30-57 (169)
232 PF14673 DUF4459: Domain of un 49.5 6.2 0.00013 34.5 0.3 17 268-289 93-109 (159)
233 PRK01749 disulfide bond format 49.2 1.4E+02 0.0029 27.5 9.1 28 166-194 30-57 (176)
234 cd03021 DsbA_GSTK DsbA family, 48.9 16 0.00034 33.7 2.9 34 312-346 170-208 (209)
235 COG1495 DsbB Disulfide bond fo 48.0 1.4E+02 0.003 27.4 8.9 46 148-195 14-59 (170)
236 cd03053 GST_N_Phi GST_N family 46.9 92 0.002 23.2 6.5 61 268-331 2-62 (76)
237 cd03054 GST_N_Metaxin GST_N fa 45.9 69 0.0015 23.9 5.6 47 273-332 13-59 (72)
238 COG3529 Predicted nucleic-acid 45.1 13 0.00028 29.1 1.4 27 275-304 12-40 (66)
239 TIGR00014 arsC arsenate reduct 44.9 41 0.00088 28.4 4.6 50 268-319 1-50 (114)
240 COG1138 CcmF Cytochrome c biog 43.6 1.6E+02 0.0035 32.8 9.9 65 68-133 125-193 (648)
241 cd02983 P5_C P5 family, C-term 41.4 58 0.0012 28.3 5.1 54 294-353 58-118 (130)
242 PF04531 Phage_holin_1: Bacter 40.5 86 0.0019 25.6 5.6 34 210-243 46-79 (84)
243 PRK04388 disulfide bond format 39.8 2E+02 0.0043 26.2 8.6 31 166-197 27-57 (172)
244 PF05297 Herpes_LMP1: Herpesvi 39.4 9.8 0.00021 38.3 0.0 18 162-180 63-80 (381)
245 COG3634 AhpF Alkyl hydroperoxi 38.9 1.2E+02 0.0026 31.9 7.6 87 256-348 104-196 (520)
246 cd03052 GST_N_GDAP1 GST_N fami 38.7 1.4E+02 0.0031 22.7 6.5 61 268-331 1-61 (73)
247 PRK04307 putative disulfide ox 38.1 1.9E+02 0.0041 27.8 8.4 31 166-197 42-72 (218)
248 TIGR03143 AhpF_homolog putativ 36.9 1.1E+02 0.0025 32.6 7.5 75 268-349 370-453 (555)
249 cd03049 GST_N_3 GST_N family, 34.7 1.4E+02 0.0031 22.0 5.9 58 268-331 1-61 (73)
250 PF13848 Thioredoxin_6: Thiore 34.6 34 0.00074 29.7 2.7 46 293-349 22-74 (184)
251 PRK01103 formamidopyrimidine/5 34.5 8 0.00017 37.7 -1.5 11 272-282 264-274 (274)
252 PRK09481 sspA stringent starva 34.2 1.2E+02 0.0026 27.6 6.3 58 268-331 11-68 (211)
253 COG3531 Predicted protein-disu 32.8 27 0.00058 33.4 1.7 21 312-332 165-187 (212)
254 COG0266 Nei Formamidopyrimidin 32.8 9.6 0.00021 37.8 -1.3 10 272-281 264-273 (273)
255 cd02981 PDI_b_family Protein D 32.3 2.4E+02 0.0052 21.9 7.2 67 267-347 20-95 (97)
256 PF13743 Thioredoxin_5: Thiore 31.7 29 0.00063 31.5 1.8 16 312-327 138-153 (176)
257 cd03030 GRX_SH3BGR Glutaredoxi 31.5 93 0.002 25.6 4.6 60 278-343 18-81 (92)
258 PRK02983 lysS lysyl-tRNA synth 31.1 1.7E+02 0.0036 34.5 8.1 19 179-197 111-129 (1094)
259 TIGR03145 cyt_nit_nrfE cytochr 30.8 7.9E+02 0.017 27.4 12.8 37 96-133 157-193 (628)
260 PRK13191 putative peroxiredoxi 30.4 34 0.00073 32.2 2.0 95 257-351 25-162 (215)
261 cd03034 ArsC_ArsC Arsenate Red 29.8 95 0.0021 26.0 4.5 49 268-318 1-49 (112)
262 cd03013 PRX5_like Peroxiredoxi 28.8 27 0.00059 30.9 1.1 63 256-323 20-93 (155)
263 COG3917 NahD 2-hydroxychromene 28.3 53 0.0011 31.1 2.8 34 312-346 167-200 (203)
264 PRK10853 putative reductase; P 28.2 87 0.0019 26.8 4.0 51 268-320 2-52 (118)
265 KOG3029 Glutathione S-transfer 27.5 1.8E+02 0.004 29.5 6.6 85 253-345 74-174 (370)
266 PF06953 ArsD: Arsenical resis 27.4 72 0.0016 28.0 3.4 37 310-346 61-98 (123)
267 cd03042 GST_N_Zeta GST_N famil 27.0 2.3E+02 0.005 20.6 5.8 59 269-331 2-61 (73)
268 PRK14811 formamidopyrimidine-D 26.9 9.6 0.00021 37.2 -2.4 14 272-285 254-267 (269)
269 PF07449 HyaE: Hydrogenase-1 e 25.1 81 0.0018 27.0 3.2 32 310-341 71-106 (107)
270 PRK03113 putative disulfide ox 24.8 4.9E+02 0.011 23.2 8.3 29 166-195 26-54 (139)
271 PF07760 DUF1616: Protein of u 24.7 3.1E+02 0.0067 26.9 7.7 83 105-197 23-106 (287)
272 cd03061 GST_N_CLIC GST_N famil 24.7 2.6E+02 0.0057 23.0 6.1 66 273-350 19-86 (91)
273 cd03073 PDI_b'_ERp72_ERp57 PDI 24.7 1.1E+02 0.0024 25.8 4.0 51 293-349 51-110 (111)
274 PF01216 Calsequestrin: Calseq 24.3 67 0.0015 33.2 3.0 87 258-351 43-145 (383)
275 PRK15035 cytochrome bd-II oxid 23.6 1.8E+02 0.004 31.5 6.2 55 110-169 91-147 (514)
276 PF02114 Phosducin: Phosducin; 22.5 1.4E+02 0.0031 29.3 4.8 75 268-349 150-237 (265)
277 PF06718 DUF1203: Protein of u 22.4 68 0.0015 27.9 2.3 14 358-371 92-105 (117)
278 COG1651 DsbG Protein-disulfide 21.7 78 0.0017 29.5 2.7 26 265-290 85-110 (244)
279 TIGR01616 nitro_assoc nitrogen 21.6 1.4E+02 0.0031 25.9 4.2 48 268-317 3-50 (126)
280 KOG2640 Thioredoxin [Function 21.4 19 0.00041 36.4 -1.5 89 256-350 66-162 (319)
281 PRK13945 formamidopyrimidine-D 21.4 21 0.00045 35.1 -1.3 10 272-281 273-282 (282)
282 PF07912 ERp29_N: ERp29, N-ter 21.0 4.9E+02 0.011 23.2 7.3 78 268-348 26-117 (126)
283 PF13848 Thioredoxin_6: Thiore 20.9 2.4E+02 0.0051 24.4 5.5 65 275-347 106-183 (184)
284 PTZ00256 glutathione peroxidas 20.8 3E+02 0.0065 24.8 6.3 95 252-349 59-180 (183)
285 PRK14810 formamidopyrimidine-D 20.2 24 0.00051 34.5 -1.1 11 271-281 262-272 (272)
286 PRK15097 cytochrome d terminal 20.2 2.2E+02 0.0049 30.9 6.0 56 109-169 90-147 (522)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.96 E-value=3.9e-28 Score=213.67 Aligned_cols=130 Identities=37% Similarity=0.570 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCCCC-cccccccccccchhccCCchhHHHHHHHHHHHHHHHHh-cc
Q 017385 63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (372)
Q Consensus 63 ~~~i~~La~iGll~S~YLt~~k~~~-----~~~~C~i~-~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~-~~ 135 (372)
..++++++++|+++|+||+++|++. +++.||+| .+||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus 5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~ 84 (142)
T smart00756 5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 4556789999999999999999853 34899998 88999999999999999999999999999999998875 44
Q ss_pred cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 017385 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (372)
Q Consensus 136 ~~~~~~l~~~~~rw~ll~~s~~~av~s~yLlyil~~~vI~alCpyC~~savisi~Lf~ltl~~ 198 (372)
.+.+ ++.|+.++.+++++.+++.|++|++.++ ||++||||+++|++++++|+++..+
T Consensus 85 ~~~~-----~~~~~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 85 VTLP-----RWTWRLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence 4454 4556677777888889999999999988 6999999999999999999988654
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.93 E-value=3e-25 Score=196.10 Aligned_cols=128 Identities=24% Similarity=0.364 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hcCCCCCCCCC-cccccccccccchhccCCchhHHHHHHHHHHHHHHHHhcccCCCc
Q 017385 64 GWCAGIGGVGFLETTYLSYLK--LTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPI 140 (372)
Q Consensus 64 ~~i~~La~iGll~S~YLt~~k--~~~~~~~C~i~-~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~~~~~~~~ 140 (372)
.++++++++|+++|.|++++| .++++++||+| ..||++|++||||++||+||+++|+++|++++++++..... .+
T Consensus 10 ~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~~- 87 (143)
T PRK14889 10 YLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-LK- 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-hh-
Confidence 345688999999999999877 35778999998 78999999999999999999999999999999998875221 11
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 017385 141 GINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (372)
Q Consensus 141 ~l~~~~~rw~ll~~s~~~av~s~yLlyil~~~vI~alCpyC~~savisi~Lf~ltl~~ 198 (372)
++.+........+..+++.||+|++.|+ ||++||||+++|++++++|++....
T Consensus 88 ----~~~~~~~~~~~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~ 140 (143)
T PRK14889 88 ----RILGRVISLWSIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIK 140 (143)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHH
Confidence 1101111112234457999999999988 6999999999999999999876543
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.92 E-value=1.6e-24 Score=188.51 Aligned_cols=129 Identities=35% Similarity=0.608 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC----CCCCCCC-cccccccccccchhccCCchhHHHHHHHHHHHHHHHHh-cccC
Q 017385 64 GWCAGIGGVGFLETTYLSYLKLTNS----DAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKS 137 (372)
Q Consensus 64 ~~i~~La~iGll~S~YLt~~k~~~~----~~~C~i~-~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~-~~~~ 137 (372)
.++.+++++|+++|.||+++++... +++||++ ..||++|++||||++||+||+++|+++|+.++.+++.. .+.+
T Consensus 3 ~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~ 82 (137)
T PF07884_consen 3 ILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccc
Confidence 3567899999999999999998644 4999988 89999999999999999999999999999999988865 3223
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 017385 138 FPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (372)
Q Consensus 138 ~~~~l~~~~~rw~ll~~s~~~av~s~yLlyil~~~vI~alCpyC~~savisi~Lf~ltl~~ 198 (372)
.+ ++.+..++..++++.+++.|+.|++.++ +|++|+||+++|++++.++++++++
T Consensus 83 ~~-----~~~~~~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 83 LS-----RWLWLLLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp -S-----TTHHHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 33 3445566666667778999999999987 7999999999999999999988753
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.89 E-value=6.1e-23 Score=182.75 Aligned_cols=136 Identities=26% Similarity=0.366 Sum_probs=105.8
Q ss_pred CchhHHH-HHHHHHHHHH---HHHHHHhhhcCCC--CCCCCC-cccccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 017385 60 FSPYGWC-AGIGGVGFLE---TTYLSYLKLTNSD--AFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (372)
Q Consensus 60 ~~~~~~i-~~La~iGll~---S~YLt~~k~~~~~--~~C~i~-~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~ 132 (372)
|...+|. ..++++|.+. +.|+.+..++++. ..|+.| ..||++|++||||++||+||+++|+++|++++++++.
T Consensus 8 p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all 87 (156)
T COG4243 8 PWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALL 87 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHH
Confidence 3444443 3445454444 4445555555544 456666 8899999999999999999999999999999999988
Q ss_pred hcccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhcchh
Q 017385 133 LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 201 (372)
Q Consensus 133 ~~~~~~~~~l~~~~~rw~ll~~s~~~av~s~yLlyil~~~vI~alCpyC~~savisi~Lf~ltl~~~~~ 201 (372)
.-...++ +++|+.++..++.+.+|+.||+|++.+. +|++|+||+++|+.++++|++...+++|
T Consensus 88 ~~~~~l~-----~~~~~~l~v~~~~g~~f~~yLiY~e~~~-~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 88 GVAGVLE-----RWTWIGLLVGSLVGSAFVPYLIYLELFV-IGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7222233 6667777777888889999999988876 6999999999999999999999888877
No 5
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-13 Score=143.23 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=62.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--------cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE---Eeee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VFIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--------~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~---~y~~ 334 (372)
.+.||||||+|||+++|+|.+.|.. ++..|||+.+ .++|.+|+|+||||..| ||+ .| .
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~~Y-~ 116 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQDY-N 116 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcceec-c
Confidence 4556699999999999999984411 2457888753 48999999999999888 775 49 9
Q ss_pred ccCCchhhhhhhccccccc
Q 017385 335 GSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 335 G~rsl~~L~~~v~~~~~~~ 353 (372)
|.|+.+.+.+|+.+-.++.
T Consensus 117 G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 117 GPREADGIVKWLKKQSGPA 135 (493)
T ss_pred CcccHHHHHHHHHhccCCC
Confidence 9999999999998775543
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.40 E-value=7.5e-13 Score=112.65 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh---ccC--ceEEcCCCCCCCCcchHhhh-hhcCCcccceeEE--CCE---Eeeecc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VFIVGS 336 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~---~~l--~~VeC~~d~~~~~~k~~~lC-~~~~I~gyPTw~i--~G~---~y~~G~ 336 (372)
+++|||+||+||++++|.|.+-|. +.+ ..|||+. ..++| ++++|++|||+++ +|+ +| .|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--------~~~l~~~~~~I~~~PTl~lf~~g~~~~~y-~G~ 103 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--------PQGKCRKQKHFFYFPVIHLYYRSRGPIEY-KGP 103 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--------ChHHHHHhcCCcccCEEEEEECCccceEE-eCC
Confidence 777889999999999999987432 123 3577764 23789 4899999999877 665 48 999
Q ss_pred CCchhhhhhh
Q 017385 337 QWRARPVRPR 346 (372)
Q Consensus 337 rsl~~L~~~v 346 (372)
++.++|.+|+
T Consensus 104 ~~~~~i~~~~ 113 (113)
T cd03006 104 MRAPYMEKFV 113 (113)
T ss_pred CCHHHHHhhC
Confidence 9999998874
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.39 E-value=6.5e-13 Score=108.12 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=59.0
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHhh---cc--CceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea~---~~--l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
++.+.+.+.. +++|+|+||+||+++++.|.+-+. .. +..|||+. ..++|++++|++|||+++ +
T Consensus 10 ~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 10 DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--------DRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred hHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--------cHHHHHHcCCCccCEEEEEcC
Confidence 3444444433 667889999999999999876332 12 34688874 248899999999999877 6
Q ss_pred CEE---eeeccCCchhhhhh
Q 017385 329 GQV---FIVGSQWRARPVRP 345 (372)
Q Consensus 329 G~~---y~~G~rsl~~L~~~ 345 (372)
|+. | .|.++.++|.+|
T Consensus 82 g~~~~~~-~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKY-YGDRSKESLVKF 100 (101)
T ss_pred CCCcccC-CCCCCHHHHHhh
Confidence 753 7 999999999876
No 8
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.37 E-value=1.2e-12 Score=107.87 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=59.7
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHhhc---------cC--ceEEcCCCCCCCCcchHhhhhhcCCcccce
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK---------QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea~~---------~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPT 324 (372)
++.+++++.. +++|+|+||+||+++++.|.+-+.. ++ .+|||+.+ .++|++++|++|||
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Pt 81 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPT 81 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCE
Confidence 4445554443 5677899999999999988753311 23 36788742 48999999999999
Q ss_pred eEE--CCE----EeeeccCCchhhhhhh
Q 017385 325 WVI--NGQ----VFIVGSQWRARPVRPR 346 (372)
Q Consensus 325 w~i--~G~----~y~~G~rsl~~L~~~v 346 (372)
.++ +|+ .| .|.|+.++|.+|+
T Consensus 82 l~~~~~g~~~~~~~-~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREY-RGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceec-CCCCCHHHHHhhC
Confidence 877 665 37 8999999999874
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.32 E-value=5.5e-12 Score=100.77 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=57.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hc-cCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE---eeeccC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---FIVGSQ 337 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~-~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~---y~~G~r 337 (372)
+++|+++||+||+++++.|.+-+ .. .+. .|||+. ..++|++++|+++||+++ +|+. | .|.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--------~~~l~~~~~v~~~Pt~~~~~~g~~~~~~-~g~~ 91 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--------NKELCKKYGVKSVPTIIFFKNGKEVKRY-NGPR 91 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--------SHHHHHHTTCSSSSEEEEEETTEEEEEE-ESSS
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhc--------cchhhhccCCCCCCEEEEEECCcEEEEE-ECCC
Confidence 78888999999999999987732 11 344 566652 358999999999999887 6754 6 9999
Q ss_pred Cchhhhhhhc
Q 017385 338 WRARPVRPRQ 347 (372)
Q Consensus 338 sl~~L~~~v~ 347 (372)
+.++|.++++
T Consensus 92 ~~~~l~~~i~ 101 (103)
T PF00085_consen 92 NAESLIEFIE 101 (103)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 10
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.32 E-value=4.8e-12 Score=104.50 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=55.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCCchh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQWRAR 341 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl~~ 341 (372)
++.|+|+||+||+++++.|.+-+ .+.+.++.+|.+.. ..++|++++|++|||.++ +|+. | .|.++.++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-----~~~l~~~~~V~~~PT~~lf~~g~~~~~-~G~~~~~~ 95 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-----KPSLLSRYGVVGFPTILLFNSTPRVRY-NGTRTLDS 95 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-----CHHHHHhcCCeecCEEEEEcCCceeEe-cCCCCHHH
Confidence 67788999999999999987732 23455566654321 358999999999999877 5533 7 99999999
Q ss_pred hhhhh
Q 017385 342 PVRPR 346 (372)
Q Consensus 342 L~~~v 346 (372)
|.+|+
T Consensus 96 l~~f~ 100 (100)
T cd02999 96 LAAFY 100 (100)
T ss_pred HHhhC
Confidence 98874
No 11
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.31 E-value=4.3e-12 Score=103.69 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=60.1
Q ss_pred HHHHhhhcC---eeEEeccCCHHHHHHHHHHhHHhh---ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 259 LAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 259 la~~L~~~g---~k~YgA~WC~hC~~qk~~fgkea~---~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
+.+.+.+.| +.+|+|+||+||+++++.|.+-+. ..+ -.|+|+.+. ..++|++++|++|||.++ +
T Consensus 10 ~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 10 FDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeC
Confidence 344444433 677889999999999998876331 223 357887542 358999999999999777 4
Q ss_pred CE--------EeeeccCCchhhhhhhc
Q 017385 329 GQ--------VFIVGSQWRARPVRPRQ 347 (372)
Q Consensus 329 G~--------~y~~G~rsl~~L~~~v~ 347 (372)
|+ .| .|.++.++|.+|++
T Consensus 84 ~~~~~~~~~~~~-~G~~~~~~l~~fi~ 109 (109)
T cd03002 84 PKKASKHAVEDY-NGERSAKAIVDFVL 109 (109)
T ss_pred CCcccccccccc-cCccCHHHHHHHhC
Confidence 43 37 99999999999863
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.31 E-value=6e-12 Score=102.59 Aligned_cols=70 Identities=19% Similarity=0.341 Sum_probs=54.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc---cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC-E---Eeeecc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VFIVGS 336 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~---~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G-~---~y~~G~ 336 (372)
+++|||+||+||+++++.|.+-+.+ .+ ..|||+. ..++|++++|++|||.++ +| + +| .|.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~-~G~ 93 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--------YESLCQQANIRAYPTIRLYPGNASKYHSY-NGW 93 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--------hHHHHHHcCCCcccEEEEEcCCCCCceEc-cCC
Confidence 6778899999999999999874322 23 3566663 358999999999999777 54 4 37 899
Q ss_pred CC-chhhhhhh
Q 017385 337 QW-RARPVRPR 346 (372)
Q Consensus 337 rs-l~~L~~~v 346 (372)
++ .++|.+|+
T Consensus 94 ~~~~~~l~~~i 104 (104)
T cd03004 94 HRDADSILEFI 104 (104)
T ss_pred CCCHHHHHhhC
Confidence 87 99998774
No 13
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.29 E-value=6e-12 Score=108.16 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=58.3
Q ss_pred eeEEec--cCCH---HHHHHHHHHhHHhh-ccCceEEcCCCCCCCCcchHhhhhhcCCc--ccceeEE--CCE-----Ee
Q 017385 268 AKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ-----VF 332 (372)
Q Consensus 268 ~k~YgA--~WC~---hC~~qk~~fgkea~-~~l~~VeC~~d~~~~~~k~~~lC~~~~I~--gyPTw~i--~G~-----~y 332 (372)
.++|+| |||+ ||++++++|.+.+. -.+..|+|+..+. ++..++|++++|+ ||||.++ ||+ .|
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~---~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y 98 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGE---KLNMELGERYKLDKESYPVIYLFHGGDFENPVPY 98 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccc---hhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccC
Confidence 344449 9999 99999999987331 2356788864221 2246899999999 9999776 673 49
Q ss_pred eecc-CCchhhhhhhcc
Q 017385 333 IVGS-QWRARPVRPRQG 348 (372)
Q Consensus 333 ~~G~-rsl~~L~~~v~~ 348 (372)
+|. |+.++|.+|+.+
T Consensus 99 -~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 99 -SGADVTVDALQRFLKG 114 (116)
T ss_pred -CCCcccHHHHHHHHHh
Confidence 997 999999999764
No 14
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.29 E-value=8e-12 Score=101.32 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHHhHHhh--c--cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE-
Q 017385 261 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV- 331 (372)
Q Consensus 261 ~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~--~--~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~- 331 (372)
+.++..-+++|+|+||+||++++|.|.+-+. + .+ ..|||+. ..++|++++|++|||.++ +|+.
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--------~~~~~~~~~i~~~Pt~~~~~~g~~~ 84 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--------EPGLSGRFFVTALPTIYHAKDGVFR 84 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--------CHhHHHHcCCcccCEEEEeCCCCEE
Confidence 3344444788889999999999999876321 1 23 3577763 247899999999999777 6764
Q ss_pred -eeeccCCchhhhhhhc
Q 017385 332 -FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 332 -y~~G~rsl~~L~~~v~ 347 (372)
| .|.++.++|.++++
T Consensus 85 ~~-~G~~~~~~l~~~i~ 100 (101)
T cd02994 85 RY-QGPRDKEDLISFIE 100 (101)
T ss_pred Ee-cCCCCHHHHHHHHh
Confidence 7 99999999999875
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.27 E-value=1.7e-11 Score=98.33 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=55.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE---eeeccC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---FIVGSQ 337 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~---y~~G~r 337 (372)
+.+|+|+||+||+++++.|.+-+ ...+. .|+|+. ..++|++++|+++||.++ +|+. + .|.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~l~~~~~i~~~Pt~~~~~~g~~~~~~-~g~~ 86 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--------QPQIAQQFGVQALPTVYLFAAGQPVDGF-QGAQ 86 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--------CHHHHHHcCCCCCCEEEEEeCCEEeeee-cCCC
Confidence 67788999999999999987632 12233 566653 358999999999999887 7764 6 9999
Q ss_pred Cchhhhhhhc
Q 017385 338 WRARPVRPRQ 347 (372)
Q Consensus 338 sl~~L~~~v~ 347 (372)
+.++|.++++
T Consensus 87 ~~~~l~~~l~ 96 (96)
T cd02956 87 PEEQLRQMLD 96 (96)
T ss_pred CHHHHHHHhC
Confidence 9999998763
No 16
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.25 E-value=1.8e-11 Score=95.12 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=59.1
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhh
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
.+++|+++|||||+++++.+.+-+ ..++.+++.|.+. ..+++++++|+++||.++||+.+..|.++.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc------CHHHHHHcCCccCCEEEECCEEEEecCCCHHHHH
Confidence 467899999999999999987632 2235555555432 3477889999999999999985449999999999
Q ss_pred hhhcc
Q 017385 344 RPRQG 348 (372)
Q Consensus 344 ~~v~~ 348 (372)
+++++
T Consensus 76 ~~l~~ 80 (82)
T TIGR00411 76 EAIKK 80 (82)
T ss_pred HHHHh
Confidence 88654
No 17
>PHA02278 thioredoxin-like protein
Probab=99.22 E-value=5e-11 Score=99.86 Aligned_cols=88 Identities=14% Similarity=0.006 Sum_probs=62.1
Q ss_pred HHHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 256 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 256 ~~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
..+|.+.+++.+ ++.|+|+|||+|+.++|.|.+-+. .+..++.++.|..+.+ ..+++++++|++.||.++ |
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d--~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD--REKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc--cHHHHHHCCCccccEEEEEEC
Confidence 345666665444 777889999999999999877332 2234444444432110 247889999999999888 7
Q ss_pred CEE--eeeccCCchhhhhh
Q 017385 329 GQV--FIVGSQWRARPVRP 345 (372)
Q Consensus 329 G~~--y~~G~rsl~~L~~~ 345 (372)
|+. ++.|..+.++|.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 875 44899999999876
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.20 E-value=2.6e-11 Score=104.53 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=64.0
Q ss_pred HHHHHHhhhcC---eeEEeccCCH--HHH--HHHHHHhHHhhc-----cCceEEcCCCCCCCCcchHhhhhhcCCcccce
Q 017385 257 LSLAKHLHAIG---AKMYGAFWCS--HCL--EQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (372)
Q Consensus 257 ~~la~~L~~~g---~k~YgA~WC~--hC~--~qk~~fgkea~~-----~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPT 324 (372)
.++.+.+++.. +++|+|+||+ ||+ ++.|.+.+.|++ ++.++++|.|. ..++|++++|+|+||
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~------~~~La~~~~I~~iPT 90 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK------DAKVAKKLGLDEEDS 90 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC------CHHHHHHcCCccccE
Confidence 45556666655 8899999995 699 666655554433 35555555443 358999999999999
Q ss_pred eEE--CCEE--eeeccCCchhhhhhhcccc
Q 017385 325 WVI--NGQV--FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 325 w~i--~G~~--y~~G~rsl~~L~~~v~~~~ 350 (372)
.++ ||+. | .|.|+.++|.+|++++.
T Consensus 91 l~lfk~G~~v~~-~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIEY-DGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEEe-eCCCCHHHHHHHHHHHh
Confidence 777 8875 7 99999999999988653
No 19
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.19 E-value=3.6e-11 Score=96.68 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=53.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hc---cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE---eee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---FIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~---~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~---y~~ 334 (372)
+.+|+|+||+||+++++.|.+-+ .. ++ -.|||+. ..++|++++|+++||+++ +|+. | .
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~-~ 90 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HRELCSEFQVRGYPTLLLFKDGEKVDKY-K 90 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------ChhhHhhcCCCcCCEEEEEeCCCeeeEe-e
Confidence 66788999999999998886532 11 23 3566764 248899999999999777 6643 6 9
Q ss_pred ccCCchhhhhhh
Q 017385 335 GSQWRARPVRPR 346 (372)
Q Consensus 335 G~rsl~~L~~~v 346 (372)
|.++.++|.+|+
T Consensus 91 G~~~~~~l~~~i 102 (102)
T cd03005 91 GTRDLDSLKEFV 102 (102)
T ss_pred CCCCHHHHHhhC
Confidence 999999998874
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.18 E-value=6.4e-11 Score=99.15 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---h-ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---V-KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQ 337 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~-~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~r 337 (372)
+++|+|+||+||+++++.|.+-+ . .++ ..|+|+. ..++|++++|+++||.++ +|+. +..|.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~ 99 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ERRLARKLGAHSVPAIVGIINGQVTFYHDSSF 99 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cHHHHHHcCCccCCEEEEEECCEEEEEecCCC
Confidence 67788999999999998876522 1 124 3566653 347899999999999776 7765 448999
Q ss_pred Cchhhhhhhcc
Q 017385 338 WRARPVRPRQG 348 (372)
Q Consensus 338 sl~~L~~~v~~ 348 (372)
+.++|.+++++
T Consensus 100 ~~~~l~~~i~~ 110 (111)
T cd02963 100 TKQHVVDFVRK 110 (111)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.17 E-value=1.8e-10 Score=109.11 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=57.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rs 338 (372)
+++|||+||+||+++++.|.+-+ ...+. .|||+. ..++|++++|++|||.++ +|+. |..|.++
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--------~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s 127 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--------ALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRS 127 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--------cHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCC
Confidence 67777999999999999987632 12233 455553 358999999999999766 7765 4478999
Q ss_pred chhhhhhhcccc
Q 017385 339 RARPVRPRQGIW 350 (372)
Q Consensus 339 l~~L~~~v~~~~ 350 (372)
.++|.+|+.+-+
T Consensus 128 ~e~L~~fi~~~~ 139 (224)
T PTZ00443 128 TEKLAAFALGDF 139 (224)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 22
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.15 E-value=9.4e-11 Score=97.40 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=52.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hc-cC--ceEEcCCCCCCCCcchHhhhhh-cCCcccceeEE--CC----EEeee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VK-QL--NYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QVFIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~-~l--~~VeC~~d~~~~~~k~~~lC~~-~~I~gyPTw~i--~G----~~y~~ 334 (372)
+.+|+|+|||||+++++.|.+-+ .+ .+ ..|+|+.+ ..++|.+ ++|++|||.++ +| ..| .
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-------~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y-~ 96 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-------QREFAKEELQLKSFPTILFFPKNSRQPIKY-P 96 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-------chhhHHhhcCCCcCCEEEEEcCCCCCceec-c
Confidence 77888999999999999987633 11 23 35677642 1367875 89999999876 33 238 8
Q ss_pred cc-CCchhhhhhh
Q 017385 335 GS-QWRARPVRPR 346 (372)
Q Consensus 335 G~-rsl~~L~~~v 346 (372)
|. |+.++|.+|+
T Consensus 97 g~~~~~~~l~~f~ 109 (109)
T cd02993 97 SEQRDVDSLLMFV 109 (109)
T ss_pred CCCCCHHHHHhhC
Confidence 85 9999998874
No 23
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.14 E-value=2.3e-10 Score=94.44 Aligned_cols=86 Identities=12% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHHHHHhhhc-C---eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 257 LSLAKHLHAI-G---AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 257 ~~la~~L~~~-g---~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
.++.+++++. | ++.|+|+||++|++++|.|.+-+ ...+.++.++.|... +..+++++++|+++||.++ |
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~---~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND---STMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh---HHHHHHHHcCCCcCCEEEEEeC
Confidence 4566666553 3 77788999999999999887632 234555555544311 1358999999999999777 7
Q ss_pred CEE---eeeccCCchhhhhhhc
Q 017385 329 GQV---FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 329 G~~---y~~G~rsl~~L~~~v~ 347 (372)
|+. + .|.. .++|.+-+.
T Consensus 81 G~~v~~~-~G~~-~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEE-EGIG-PDELIGDVL 100 (103)
T ss_pred CeEEEEE-eCCC-HHHHHHHHH
Confidence 864 5 7744 456655443
No 24
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.13 E-value=2.3e-10 Score=94.12 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=57.4
Q ss_pred HHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh--h--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 257 ~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea--~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
.++.+++++.+ +.+|+|+||+||+.+.+.|.+-+ . +.+.++..+.| + .+++++++|+++||+++ |
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~-----~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--T-----IDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--C-----HHHHHHcCCCcCcEEEEEEC
Confidence 34555555544 66788999999999999887622 1 12333343333 1 26789999999999888 7
Q ss_pred CEE--eeeccCCchhhhhhhcc
Q 017385 329 GQV--FIVGSQWRARPVRPRQG 348 (372)
Q Consensus 329 G~~--y~~G~rsl~~L~~~v~~ 348 (372)
|+. +..|. +.++|.+++.+
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhh
Confidence 865 43675 77888887654
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.13 E-value=1.9e-10 Score=92.58 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=53.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE----Eeeecc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VFIVGS 336 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~----~y~~G~ 336 (372)
+.+|+|+||+||+++++.|.+-+ ..++ .+++|+. ..++|++++|+++||.++ +|+ .| .|.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~-~g~ 92 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV--------HQSLAQQYGVRGFPTIKVFGAGKNSPQDY-QGG 92 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc--------hHHHHHHCCCCccCEEEEECCCCcceeec-CCC
Confidence 66777999999999999887632 2233 3566653 348899999999999766 452 37 999
Q ss_pred CCchhhhhhh
Q 017385 337 QWRARPVRPR 346 (372)
Q Consensus 337 rsl~~L~~~v 346 (372)
++.++|.+|+
T Consensus 93 ~~~~~l~~~~ 102 (103)
T cd03001 93 RTAKAIVSAA 102 (103)
T ss_pred CCHHHHHHHh
Confidence 9999999885
No 26
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.10 E-value=1.5e-10 Score=92.87 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=53.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh-----ccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC-E---Eeee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV-----KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VFIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~-----~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G-~---~y~~ 334 (372)
+.+|+|+||+||+++++.|.+-+. .++. .+||+.+ ..++|++++|+++||+++ +| + .| .
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~-~ 93 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKY-E 93 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcccc-C
Confidence 778889999999999999876331 1233 3555531 248999999999999887 33 2 27 9
Q ss_pred ccCCchhhhhhh
Q 017385 335 GSQWRARPVRPR 346 (372)
Q Consensus 335 G~rsl~~L~~~v 346 (372)
|.++.++|++|+
T Consensus 94 g~~~~~~l~~~i 105 (105)
T cd02998 94 GGRDLEDLVKFV 105 (105)
T ss_pred CccCHHHHHhhC
Confidence 999999998874
No 27
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.09 E-value=1.5e-10 Score=95.06 Aligned_cols=73 Identities=15% Similarity=0.355 Sum_probs=55.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc------cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE--Eeeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK------QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VFIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~------~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~--~y~~G 335 (372)
+.+|+|+|||+|+++++.|.+-+.+ .+ ..++|+. ..++|++++|+++||.++ +|. .| .|
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~~~~~~~~I~~~Pt~~l~~~~~~~~~-~G 89 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YSSIASEFGVRGYPTIKLLKGDLAYNY-RG 89 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CHhHHhhcCCccccEEEEEcCCCceee-cC
Confidence 6778899999999999888763321 12 3577763 348899999999999777 442 36 99
Q ss_pred cCCchhhhhhhccc
Q 017385 336 SQWRARPVRPRQGI 349 (372)
Q Consensus 336 ~rsl~~L~~~v~~~ 349 (372)
.++.++|.++++.+
T Consensus 90 ~~~~~~l~~~~~~~ 103 (104)
T cd03000 90 PRTKDDIVEFANRV 103 (104)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999997654
No 28
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.08 E-value=2.7e-10 Score=91.53 Aligned_cols=69 Identities=20% Similarity=0.398 Sum_probs=53.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh--c---cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE-----Eee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV--K---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VFI 333 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~--~---~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~-----~y~ 333 (372)
+++|+|+||+||+++++.|.+-+. + .+ .++||+. .++|.++++++|||+++ +|+ +|
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~- 91 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---------NDVPSEFVVDGFPTILFFPAGDKSNPIKY- 91 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---------hhhhhhccCCCCCEEEEEcCCCcCCceEc-
Confidence 678889999999999999877432 1 23 3577763 15677899999999887 554 37
Q ss_pred eccCCchhhhhhh
Q 017385 334 VGSQWRARPVRPR 346 (372)
Q Consensus 334 ~G~rsl~~L~~~v 346 (372)
.|.++.++|.+|+
T Consensus 92 ~g~~~~~~l~~fi 104 (104)
T cd02995 92 EGDRTLEDLIKFI 104 (104)
T ss_pred cCCcCHHHHHhhC
Confidence 9999999998874
No 29
>PHA02125 thioredoxin-like protein
Probab=99.07 E-value=4.2e-10 Score=88.16 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=49.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE--eeecc-CCchhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV--FIVGS-QWRARPVR 344 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~--y~~G~-rsl~~L~~ 344 (372)
+++|+|+|||||+++++.+.+-+ ..+++.|.|. ..+++++++|+++||.+ +|+. ...|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 57889999999999999997532 3456665432 35889999999999987 7763 22775 55677765
Q ss_pred h
Q 017385 345 P 345 (372)
Q Consensus 345 ~ 345 (372)
-
T Consensus 72 ~ 72 (75)
T PHA02125 72 K 72 (75)
T ss_pred H
Confidence 3
No 30
>PTZ00102 disulphide isomerase; Provisional
Probab=99.06 E-value=5.4e-10 Score=113.48 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=59.3
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHhh------ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eee
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEAV------KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIV 334 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea~------~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~ 334 (372)
-+++|+|+||+||+++++.|.+.+. .++ ..|||+. ..++|++++|+||||.++ +|+. | .
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------~~~l~~~~~i~~~Pt~~~~~~g~~~~y-~ 122 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------EMELAQEFGVRGYPTIKFFNKGNPVNY-S 122 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC--------CHHHHHhcCCCcccEEEEEECCceEEe-c
Confidence 3777889999999999999876331 123 3577764 348999999999999776 5543 7 9
Q ss_pred ccCCchhhhhhhccccc
Q 017385 335 GSQWRARPVRPRQGIWL 351 (372)
Q Consensus 335 G~rsl~~L~~~v~~~~~ 351 (372)
|.|+.++|.+|+.....
T Consensus 123 g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 123 GGRTADGIVSWIKKLTG 139 (477)
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999987644
No 31
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.05 E-value=4.5e-10 Score=91.84 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHH------hHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE-C
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMF------GSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N 328 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~f------gkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-~ 328 (372)
++.+.+++.. +++|+|+||++|+++++.+ .++..+++.+++.|.+..+ ....+++++++|+++||.++ +
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND--PEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC--HHHHHHHHHcCCCCCCEEEEEC
Confidence 3444444443 6788899999999999655 2222225555555433211 12358899999999999777 3
Q ss_pred ---CEE--eeeccCCchhhhhhhc
Q 017385 329 ---GQV--FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 329 ---G~~--y~~G~rsl~~L~~~v~ 347 (372)
|+. +..|.++.++|.++++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 443 3389999999988753
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.05 E-value=8.3e-10 Score=89.60 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHhhhcC---eeEEeccCCHHHHHHHHHHhH---HhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC
Q 017385 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGS---EAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 329 (372)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WC~hC~~qk~~fgk---ea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G 329 (372)
+|.+.+.+.+ +.+|+|+||++|+++++.+.+ +...++.+++.|.|. ..++..+++|+++||.++ +|
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~------~~~l~~~~~v~~vPt~~i~~~g 77 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE------DQEIAEAAGIMGTPTVQFFKDK 77 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC------CHHHHHHCCCeeccEEEEEECC
Confidence 3455555444 778889999999999988765 222345566666543 357888999999999777 77
Q ss_pred EE--eeeccCCchhhhhhhc
Q 017385 330 QV--FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 330 ~~--y~~G~rsl~~L~~~v~ 347 (372)
+. ...|.++.++|.++++
T Consensus 78 ~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 78 ELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred eEEEEEeCCccHHHHHHhhC
Confidence 65 3489999999988753
No 33
>PRK10996 thioredoxin 2; Provisional
Probab=99.04 E-value=8.6e-10 Score=96.28 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=62.3
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~ 330 (372)
++.+.+++.. +..|+|+||++|+++++.|.+-+ ..++.+++.|.+. ..+++++++|+++||.++ +|+
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA------ERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC------CHHHHHhcCCCccCEEEEEECCE
Confidence 4444454322 66788999999999998887632 2345565665443 358899999999999877 787
Q ss_pred E--eeeccCCchhhhhhhcc
Q 017385 331 V--FIVGSQWRARPVRPRQG 348 (372)
Q Consensus 331 ~--y~~G~rsl~~L~~~v~~ 348 (372)
. ...|..+.++|.+++++
T Consensus 118 ~v~~~~G~~~~e~l~~~l~~ 137 (139)
T PRK10996 118 VVDMLNGAVPKAPFDSWLNE 137 (139)
T ss_pred EEEEEcCCCCHHHHHHHHHH
Confidence 5 23899999999998775
No 34
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.03 E-value=6e-10 Score=83.59 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=55.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhhhc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQ 347 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~ 347 (372)
+++|+++|||+|+++++.+.+. .++|.+++.+... ....++++.+++.++||++++|+.. .|. +.++|.++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~~~--~~~~~~~~~~~~~~vP~~~~~~~~~-~g~-~~~~i~~~i~ 74 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEKDS--AAREEVLKVLGQRGVPVIVIGHKII-VGF-DPEKLDQLLE 74 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccCCH--HHHHHHHHHhCCCcccEEEECCEEE-eeC-CHHHHHHHhC
Confidence 6799999999999999999762 4666666654321 1134577889999999999999886 886 6688887753
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.03 E-value=9.1e-10 Score=88.61 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=53.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--h---ccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE---eeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--V---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---FIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~---~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~---y~~G 335 (372)
+..|+|+||++|+++++.+.+-+ . ..+. .++|+.+. ..++|++++|++|||.++ +|+. | .|
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~-~g 93 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKY-EG 93 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEe-CC
Confidence 67788999999999998876532 1 1233 45666431 358899999999999766 6653 6 89
Q ss_pred cCCchhhhhhh
Q 017385 336 SQWRARPVRPR 346 (372)
Q Consensus 336 ~rsl~~L~~~v 346 (372)
.++.++|.+|+
T Consensus 94 ~~~~~~l~~~l 104 (104)
T cd02997 94 ERTAEDIIEFM 104 (104)
T ss_pred CCCHHHHHhhC
Confidence 99999988763
No 36
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.02 E-value=6.6e-10 Score=93.81 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=52.9
Q ss_pred HHHHHhhhcC---eeEEeccCCHHHHHHHHHHhHHhh--c----cC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeE
Q 017385 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEAV--K----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (372)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WC~hC~~qk~~fgkea~--~----~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~ 326 (372)
++.+.+.+.+ +.+|+|+||++|+.+++.|.+-+. + .+ ..|+|+.+. ..++|++++|++|||++
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLR 83 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEE
Confidence 3444444443 667789999999999998876322 1 13 457886432 34889999999999988
Q ss_pred E--C-------CEEeeeccCCchhhh
Q 017385 327 I--N-------GQVFIVGSQWRARPV 343 (372)
Q Consensus 327 i--~-------G~~y~~G~rsl~~L~ 343 (372)
+ + |..|..++|..+++.
T Consensus 84 lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 84 YFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EECCCCccCCCCCcccCCccCHHHHH
Confidence 8 2 334523336666553
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.01 E-value=9.3e-10 Score=87.88 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=55.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hc---cCce--EEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE---Eeeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VK---QLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VFIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~---~l~~--VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~---~y~~G 335 (372)
+.+|+|+||++|+++++.|.+-+ .+ .+.+ +||+. ..++|++++|+++||+.+ +|+ .| .|
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~i~~~P~~~~~~~~~~~~~~-~g 87 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKDLASRFGVSGFPTIKFFPKGKKPVDY-EG 87 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHHHHHhCCCCcCCEEEEecCCCcceee-cC
Confidence 77888999999999988776522 22 2444 45543 358999999999999866 455 37 99
Q ss_pred cCCchhhhhhhcc
Q 017385 336 SQWRARPVRPRQG 348 (372)
Q Consensus 336 ~rsl~~L~~~v~~ 348 (372)
.++.++|.+++++
T Consensus 88 ~~~~~~l~~~i~~ 100 (102)
T TIGR01126 88 GRDLEAIVEFVNE 100 (102)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998765
No 38
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.01 E-value=1.7e-10 Score=113.17 Aligned_cols=74 Identities=15% Similarity=0.341 Sum_probs=56.7
Q ss_pred eeEEeccCCHHHHHHHHHHhH---Hhhc-----cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGS---EAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgk---ea~~-----~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G 335 (372)
.+.||||||+|||++.|.|.+ +..+ ++...||+. .+.++.+++||||||..+ ||-. | .|
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dY-RG 117 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDY-RG 117 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeec-CC
Confidence 556669999999999999865 2211 223566653 568899999999999877 4433 8 99
Q ss_pred cCCchhhhhhhcccc
Q 017385 336 SQWRARPVRPRQGIW 350 (372)
Q Consensus 336 ~rsl~~L~~~v~~~~ 350 (372)
.|+.++|.+|.+.+.
T Consensus 118 ~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCA 132 (468)
T ss_pred CccHHHHHHHHHhcc
Confidence 999999999988663
No 39
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.98 E-value=1.6e-09 Score=92.91 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=53.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc---cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCCch
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQWRA 340 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~---~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl~ 340 (372)
++.|+|+|||+|+.++|.|.+-+.+ .+.++.+|.|. ..++.++++|++.||.++ ||+. .+.|.-+.+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~------~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~ 91 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE------VPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNN 91 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC------CHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCc
Confidence 6778899999999999999874422 34556666654 348889999999999887 7876 446777766
Q ss_pred hhhh
Q 017385 341 RPVR 344 (372)
Q Consensus 341 ~L~~ 344 (372)
+|..
T Consensus 92 ~~~~ 95 (114)
T cd02954 92 KINW 95 (114)
T ss_pred eEEE
Confidence 6654
No 40
>PRK09381 trxA thioredoxin; Provisional
Probab=98.97 E-value=1.5e-09 Score=89.30 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=56.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh---ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~---~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rs 338 (372)
+.+|+|+|||+|+.+++.|.+-+. .++ ..|+|+. ..+++++++|+++||+++ +|+. +..|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 96 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--------NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 96 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--------ChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCC
Confidence 677889999999999998876332 223 4577764 247788999999999888 7765 3379999
Q ss_pred chhhhhhhccc
Q 017385 339 RARPVRPRQGI 349 (372)
Q Consensus 339 l~~L~~~v~~~ 349 (372)
.++|++++.+.
T Consensus 97 ~~~l~~~i~~~ 107 (109)
T PRK09381 97 KGQLKEFLDAN 107 (109)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 41
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.96 E-value=1.6e-09 Score=95.12 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=57.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE---CCEE--eeeccCCc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQV--FIVGSQWR 339 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i---~G~~--y~~G~rsl 339 (372)
+++|||+||++|+++++.|.+-+ .+++.++..+.|... ..+++++++|+++||.++ +|+. +..|..+.
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~----~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK----WLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc----cHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 77888999999999998887632 223455544433211 347789999999999776 4754 33899999
Q ss_pred hhhhhhhcccc
Q 017385 340 ARPVRPRQGIW 350 (372)
Q Consensus 340 ~~L~~~v~~~~ 350 (372)
++|.++++.+.
T Consensus 100 ~~l~~~l~~l~ 110 (142)
T cd02950 100 QVLAQNLDALV 110 (142)
T ss_pred HHHHHHHHHHH
Confidence 99988877664
No 42
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.96 E-value=3.7e-09 Score=84.56 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=57.2
Q ss_pred HHHHHhhhc--C--eeEEeccCCHHHHHHHHHHhHHhhc---cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 258 SLAKHLHAI--G--AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 258 ~la~~L~~~--g--~k~YgA~WC~hC~~qk~~fgkea~~---~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
++.+.++.. . +.+|+|+||++|+++++.|.+-+.+ .+.++.+|.+. ..++|++++|+++||+++ +
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEEC
Confidence 344444444 2 6777899999999999988774333 46667776542 358899999999999888 7
Q ss_pred CEE--eeeccCCchhhhhhh
Q 017385 329 GQV--FIVGSQWRARPVRPR 346 (372)
Q Consensus 329 G~~--y~~G~rsl~~L~~~v 346 (372)
|+. +..|. +.++|.+.+
T Consensus 78 g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred CEEEEEEeCC-CHHHHHHhh
Confidence 765 32564 556666653
No 43
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.96 E-value=2.8e-09 Score=81.64 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=55.5
Q ss_pred cCeeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE---eeeccCC
Q 017385 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---FIVGSQW 338 (372)
Q Consensus 266 ~g~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~---y~~G~rs 338 (372)
.-+.+|+++||++|+++++.+.+-+. .++.++.++.+. ..++|++++|+++||+++ +|+. + .|..+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~v~~~P~~~~~~~g~~~~~~-~g~~~ 84 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE------NPELAEEYGVRSIPTFLFFKNGKEVDRV-VGADP 84 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC------ChhHHHhcCcccccEEEEEECCEEEEEE-ecCCC
Confidence 34788899999999999999877332 345544443322 247899999999999888 6763 6 88888
Q ss_pred chhhhhhh
Q 017385 339 RARPVRPR 346 (372)
Q Consensus 339 l~~L~~~v 346 (372)
.++|.+++
T Consensus 85 ~~~l~~~i 92 (93)
T cd02947 85 KEELEEFL 92 (93)
T ss_pred HHHHHHHh
Confidence 88888775
No 44
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.96 E-value=2.7e-09 Score=84.70 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=59.7
Q ss_pred HHHHHhhhcC---eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC
Q 017385 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 329 (372)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G 329 (372)
++.+.+++.+ +.+|+++||++|+++++.|.+-+ ..++.++..|.+. ..++|++++|+++||.++ +|
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~------~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE------NPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC------CHHHHHHcCCCcCCEEEEEeCC
Confidence 4445554432 66788999999999998887622 2235544443322 247899999999999888 67
Q ss_pred EE--eeeccCCchhhhhhhcc
Q 017385 330 QV--FIVGSQWRARPVRPRQG 348 (372)
Q Consensus 330 ~~--y~~G~rsl~~L~~~v~~ 348 (372)
+. ...|.++.++|.++++.
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINK 99 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHh
Confidence 54 22799999999988764
No 45
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.95 E-value=2e-09 Score=90.88 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=61.4
Q ss_pred HHHHHhhhc-C--eeEEeccCCHHHHHHHHHHh------HHhhccCceEEcCCCCCCC-------CcchHhhhhhcCCcc
Q 017385 258 SLAKHLHAI-G--AKMYGAFWCSHCLEQKQMFG------SEAVKQLNYVECFPDGYRK-------GTKIAKACSDAKIEG 321 (372)
Q Consensus 258 ~la~~L~~~-g--~k~YgA~WC~hC~~qk~~fg------kea~~~l~~VeC~~d~~~~-------~~k~~~lC~~~~I~g 321 (372)
++++.+++. . +++|+|+||+||+++++.+. +...+.+..+.++.+.... .....+++.+++|++
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 445555555 3 77889999999999997653 1122345556665543210 011357899999999
Q ss_pred cceeEE---C-CEE--eeeccCCchhhhhhhccc
Q 017385 322 FPTWVI---N-GQV--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 322 yPTw~i---~-G~~--y~~G~rsl~~L~~~v~~~ 349 (372)
+||.++ + |+. ...|..+.+++.++++.+
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 999777 3 454 338999999988887654
No 46
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.94 E-value=2e-09 Score=90.83 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=62.1
Q ss_pred HHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C----
Q 017385 259 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N---- 328 (372)
Q Consensus 259 la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~---- 328 (372)
++++|+.-. +++|+|+|||+|+++++.+.+-+. +++.++..|.|. ..++..+++|++.||.++ +
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~------~~~l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE------DKEKAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc------CHHHHHHcCCCcCCEEEEEeCCeec
Confidence 566665432 566789999999999998876432 345555555543 358889999999999888 2
Q ss_pred CEEeeeccCCchhhhhhhcccc
Q 017385 329 GQVFIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 329 G~~y~~G~rsl~~L~~~v~~~~ 350 (372)
|+..+.|..+-++|.+++..+.
T Consensus 89 ~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 89 GGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred ceEEEEecCchHHHHHHHHHHH
Confidence 2223389999999999887654
No 47
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.94 E-value=4.8e-08 Score=103.68 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred eeEEeccCCHHHHHHHHH-HhH----HhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE---CCEE----eeec
Q 017385 268 AKMYGAFWCSHCLEQKQM-FGS----EAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQV----FIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~-fgk----ea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i---~G~~----y~~G 335 (372)
+++|+|+||++||++++. |.. ++.+++.+++.|.++++. +..+++++++|+|+||.++ ||+. +..|
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~--~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA--EDVALLKHYNVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh--hhHHHHHHcCCCCCCEEEEECCCCCCcccccccC
Confidence 667889999999999875 432 123445555555443221 2468899999999999777 4653 3379
Q ss_pred cCCchhhhhhhccc
Q 017385 336 SQWRARPVRPRQGI 349 (372)
Q Consensus 336 ~rsl~~L~~~v~~~ 349 (372)
..+.+++.+++++.
T Consensus 556 ~~~~~~f~~~L~~~ 569 (571)
T PRK00293 556 FMDAAAFAAHLRQL 569 (571)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999887764
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=98.91 E-value=1.7e-09 Score=109.78 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=66.7
Q ss_pred HHHHHhhhcC---eeEEeccCCHHHHHHHHHHhHHh--hc---c--CceEEcCCCCCCCCcchHhhhhhcCCcccceeEE
Q 017385 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (372)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WC~hC~~qk~~fgkea--~~---~--l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i 327 (372)
++.+++.+.| +++|+|+||+||+++++.|.+-+ .+ . +..++|+.+ ...|++++|++|||.++
T Consensus 366 ~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--------~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 366 TFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--------ETPLEEFSWSAFPTILF 437 (477)
T ss_pred chHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--------ccchhcCCCcccCeEEE
Confidence 4445543444 67788999999999999887632 11 1 335677643 25688999999999776
Q ss_pred --CC-E---EeeeccCCchhhhhhhcccccccccccc
Q 017385 328 --NG-Q---VFIVGSQWRARPVRPRQGIWLSRNESAQ 358 (372)
Q Consensus 328 --~G-~---~y~~G~rsl~~L~~~v~~~~~~~~~~~~ 358 (372)
+| + +| .|.++.++|.++++.....+.++.+
T Consensus 438 ~~~~~~~~~~~-~G~~~~~~l~~~i~~~~~~~~~~~~ 473 (477)
T PTZ00102 438 VKAGERTPIPY-EGERTVEGFKEFVNKHATNPFEDDT 473 (477)
T ss_pred EECCCcceeEe-cCcCCHHHHHHHHHHcCCCCccccc
Confidence 33 3 36 9999999999999988776665554
No 49
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.90 E-value=3e-09 Score=106.60 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=58.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh----c--cCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE----Eee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV----K--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VFI 333 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~----~--~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~----~y~ 333 (372)
+++|+|+||+||+++++.|.+-+. . ++. .|+|+. ..++|++++|++|||.++ +|+ .|
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--------~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~- 92 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--------EKDLAQKYGVSGYPTLKIFRNGEDSVSDY- 92 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------cHHHHHhCCCccccEEEEEeCCccceeEe-
Confidence 667779999999999998876321 1 133 566763 248999999999999777 565 37
Q ss_pred eccCCchhhhhhhccccc
Q 017385 334 VGSQWRARPVRPRQGIWL 351 (372)
Q Consensus 334 ~G~rsl~~L~~~v~~~~~ 351 (372)
.|.++.++|.+|+.....
T Consensus 93 ~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 93 NGPRDADGIVKYMKKQSG 110 (462)
T ss_pred cCCCCHHHHHHHHHHhcC
Confidence 999999999999987654
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.90 E-value=2e-09 Score=111.59 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=55.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc------cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE----Eeeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VFIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~------~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~----~y~~G 335 (372)
+++||||||+||+++++.|.+-|.+ ++-.|+||.+. ....+++++|++|||.++ ||+ .|.+|
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g 448 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYPSE 448 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCCCC
Confidence 6677799999999999999774321 13457777542 123356899999999777 553 48336
Q ss_pred cCCchhhhhhhccc
Q 017385 336 SQWRARPVRPRQGI 349 (372)
Q Consensus 336 ~rsl~~L~~~v~~~ 349 (372)
.|+.+.|.+|++.+
T Consensus 449 ~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 449 KRDVDSLMSFVNLL 462 (463)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998643
No 51
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.1e-09 Score=95.06 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=66.8
Q ss_pred HHHHHHHhhhcC---eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--
Q 017385 256 ALSLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 327 (372)
Q Consensus 256 ~~~la~~L~~~g---~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-- 327 (372)
..++-+.+.+++ +++|+|.||+.|+.++|...+-+ ..++.....|.|. ..++..+|+|+.+||.++
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~------~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE------HPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred HHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc------ccchHhhcceeeeeEEEEEE
Confidence 344555555665 77888999999999998877633 3345555555553 347888999999999777
Q ss_pred CCEE--eeeccCCchhhhhhhcccc
Q 017385 328 NGQV--FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 328 ~G~~--y~~G~rsl~~L~~~v~~~~ 350 (372)
|||. .+.|..+.+.|.++++++.
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 8876 4599999999999988764
No 52
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.89 E-value=5.1e-09 Score=82.56 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=50.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccC-Cchhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQ-WRARPV 343 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~r-sl~~L~ 343 (372)
+.|| |+|||+|+.+++.+.+-+ ..++.+++.+. .+.+.+++|.+.||.++||+...+|.+ +.++|+
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIK 72 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHH
Confidence 4566 899999999998877632 22345666651 134678999999999999987558964 448888
Q ss_pred hhh
Q 017385 344 RPR 346 (372)
Q Consensus 344 ~~v 346 (372)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 764
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.89 E-value=6.9e-09 Score=81.31 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=58.4
Q ss_pred HHHHHhhhc--CeeEEeccCCHHHHHHHHHHhHHh--h---ccCce--EEcCCCCCCCCcchHhhhhhcCCcccceeEE-
Q 017385 258 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (372)
Q Consensus 258 ~la~~L~~~--g~k~YgA~WC~hC~~qk~~fgkea--~---~~l~~--VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i- 327 (372)
++.+.+++. -+.+|+++||++|+++++.|.+-+ . ..+.+ |+|+. ..++|++++|+++||.++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hHHHHHhCCCCCCCEEEEE
Confidence 455555555 378888999999999999887632 2 33444 55543 358999999999999777
Q ss_pred -CC-EE---eeeccCCchhhhhhh
Q 017385 328 -NG-QV---FIVGSQWRARPVRPR 346 (372)
Q Consensus 328 -~G-~~---y~~G~rsl~~L~~~v 346 (372)
+| +. | .|.++.+++.+|+
T Consensus 79 ~~~~~~~~~~-~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKY-EGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccC-CCCcCHHHHHhhC
Confidence 33 22 7 8999999988763
No 54
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.88 E-value=4e-09 Score=79.73 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=47.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G 335 (372)
+++|+++|||+|++.++.+.+-+ ..++.+.+.|.+. ..++.+++||++.||.+++|+....|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 67899999999999999887532 2346666665543 23678899999999999999874254
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=98.88 E-value=3.8e-09 Score=109.37 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=55.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc----cCc--eEEcCCCCCCCCcchHhhhh-hcCCcccceeEE--CCE----Eeee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK----QLN--YVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ----VFIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~----~l~--~VeC~~d~~~~~~k~~~lC~-~~~I~gyPTw~i--~G~----~y~~ 334 (372)
+++||||||+||+++++.|.+-+.+ .+. .|+|+.+ +.++|+ +++|++|||.++ +|+ .|.+
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~ 441 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPIKYPS 441 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCeeecCC
Confidence 7778899999999999999874321 133 4666521 247786 599999999777 443 4834
Q ss_pred ccCCchhhhhhhccc
Q 017385 335 GSQWRARPVRPRQGI 349 (372)
Q Consensus 335 G~rsl~~L~~~v~~~ 349 (372)
|.|+.+.|.+|++.+
T Consensus 442 ~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 442 EKRDVDSLLSFVNSL 456 (457)
T ss_pred CCcCHHHHHHHHHHh
Confidence 579999999998754
No 56
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.85 E-value=3e-08 Score=88.80 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=47.7
Q ss_pred HHHHHhhhc--C--eeEEeccCCHHHHHHHHHHhHHhh----ccCceEEcCCCCCCCCcchHhhhhhcCCcc------cc
Q 017385 258 SLAKHLHAI--G--AKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKGTKIAKACSDAKIEG------FP 323 (372)
Q Consensus 258 ~la~~L~~~--g--~k~YgA~WC~hC~~qk~~fgkea~----~~l~~VeC~~d~~~~~~k~~~lC~~~~I~g------yP 323 (372)
++.+.+.+. + +++|+|+|||||+++++.|.+-+. .++.++++|.|. ..++|++++|++ +|
T Consensus 37 ~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~------~~~la~~~~V~~~~~v~~~P 110 (152)
T cd02962 37 TLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR------FPNVAEKFRVSTSPLSKQLP 110 (152)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC------CHHHHHHcCceecCCcCCCC
Confidence 455555432 2 778889999999999998876332 125444444332 358899999988 99
Q ss_pred eeEE--CCEE
Q 017385 324 TWVI--NGQV 331 (372)
Q Consensus 324 Tw~i--~G~~ 331 (372)
|.++ +|+.
T Consensus 111 T~ilf~~Gk~ 120 (152)
T cd02962 111 TIILFQGGKE 120 (152)
T ss_pred EEEEEECCEE
Confidence 9877 7765
No 57
>PTZ00051 thioredoxin; Provisional
Probab=98.82 E-value=2.1e-08 Score=80.50 Aligned_cols=79 Identities=18% Similarity=0.357 Sum_probs=52.5
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV 331 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~ 331 (372)
++.+.+.+.. +.+|||+||++|+++++.|.+-+. ..+.++..+.+. ..+++++++|+++||.++ +|+.
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~------~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE------LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc------hHHHHHHCCCceeeEEEEEeCCeE
Confidence 3444444433 668889999999999998877332 234455444332 358899999999999777 6765
Q ss_pred --eeeccCCchhhh
Q 017385 332 --FIVGSQWRARPV 343 (372)
Q Consensus 332 --y~~G~rsl~~L~ 343 (372)
...|. ..++|.
T Consensus 84 ~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 84 VDTLLGA-NDEALK 96 (98)
T ss_pred EEEEeCC-CHHHhh
Confidence 22664 445554
No 58
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.3e-09 Score=110.24 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=50.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hc---cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE---CC----EEeeec
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NG----QVFIVG 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~---~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i---~G----~~y~~G 335 (372)
.+.||||||||||+++|.|.+-| .+ ++-..++|..- | ++ ...+|++|||+.+ ++ ..| .|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa-N------d~-~~~~~~~fPTI~~~pag~k~~pv~y-~g 458 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA-N------DV-PSLKVDGFPTILFFPAGHKSNPVIY-NG 458 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc-c------cC-ccccccccceEEEecCCCCCCCccc-CC
Confidence 44455999999999998887743 22 23345555432 1 11 1368999999888 23 238 99
Q ss_pred cCCchhhhhhhccc
Q 017385 336 SQWRARPVRPRQGI 349 (372)
Q Consensus 336 ~rsl~~L~~~v~~~ 349 (372)
.|++++|.+|+..-
T Consensus 459 ~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 459 DRTLEDLKKFIKKS 472 (493)
T ss_pred CcchHHHHhhhccC
Confidence 99999999997654
No 59
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.77 E-value=1.1e-08 Score=95.21 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=59.6
Q ss_pred hcCeeEEec---cCCHHHHHHHHHHhHHhh--ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE----E
Q 017385 265 AIGAKMYGA---FWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 331 (372)
Q Consensus 265 ~~g~k~YgA---~WC~hC~~qk~~fgkea~--~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~----~ 331 (372)
...+++|.+ +|||||+++++.+.+-+. .++ .++++|.|. ..+++++++|+++||.++ ||+ +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 334777877 999999999998876432 223 367776543 458999999999999888 543 3
Q ss_pred eeeccCCchhhhhhhcccc
Q 017385 332 FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 332 y~~G~rsl~~L~~~v~~~~ 350 (372)
+ .|..+.++|.++++.+.
T Consensus 94 ~-~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 94 Y-TGIPAGYEFAALIEDIV 111 (215)
T ss_pred E-eecCCHHHHHHHHHHHH
Confidence 5 89999999988887663
No 60
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.76 E-value=3.6e-08 Score=84.76 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=57.3
Q ss_pred HHHHhhh--cCeeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCC---cchHhhhhhc----CCcccceeE
Q 017385 259 LAKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKG---TKIAKACSDA----KIEGFPTWV 326 (372)
Q Consensus 259 la~~L~~--~g~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~---~k~~~lC~~~----~I~gyPTw~ 326 (372)
+.+.+++ ..+++||++|||+|++++|.+.+-+. ..+-||+.+.+....- .+..++.+++ +|.+.||.+
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v 95 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFV 95 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEE
Confidence 4444443 34899999999999999998877432 2245777765431110 1123555555 466799987
Q ss_pred E--CCEE--eeec-cCCchhhhhhh
Q 017385 327 I--NGQV--FIVG-SQWRARPVRPR 346 (372)
Q Consensus 327 i--~G~~--y~~G-~rsl~~L~~~v 346 (372)
+ ||+. +..| ..+.++|+++.
T Consensus 96 ~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 96 HITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 7 7865 4378 45699998874
No 61
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.7e-09 Score=103.20 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=61.5
Q ss_pred HHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC-E-
Q 017385 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q- 330 (372)
Q Consensus 258 ~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G-~- 330 (372)
.+.-.-.+..+++|+||||+||+++.++|.+-+ ..++...+||.+. ..++|++++|+||||..+ +| +
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~------~~~~~~~y~i~gfPtl~~f~~~~~~ 114 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE------HKDLCEKYGIQGFPTLKVFRPGKKP 114 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh------hHHHHHhcCCccCcEEEEEcCCCce
Confidence 334444555688888999999999999998632 1223344444332 358999999999999777 45 2
Q ss_pred -EeeeccCCchhhhhhhccc
Q 017385 331 -VFIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 331 -~y~~G~rsl~~L~~~v~~~ 349 (372)
.| +|.++.+++.++..+.
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 115 IDY-SGPRNAESLAEFLIKE 133 (383)
T ss_pred eec-cCcccHHHHHHHHHHh
Confidence 38 9999999999886644
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.75 E-value=2.1e-08 Score=93.29 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=57.6
Q ss_pred cCeeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEEC--CEEeeeccCCchh
Q 017385 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN--GQVFIVGSQWRAR 341 (372)
Q Consensus 266 ~g~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~--G~~y~~G~rsl~~ 341 (372)
.-+++|+|+|||||++.++.+.+-+. .++.+.+.|.+. ..+++.+++|+++||.+++ |+.+ .|..+.++
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~-~G~~~~~~ 207 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEF-VGAYPEEQ 207 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEE-ECCCCHHH
Confidence 34777889999999999988776332 245555666553 3478889999999999884 4447 99999999
Q ss_pred hhhhhc
Q 017385 342 PVRPRQ 347 (372)
Q Consensus 342 L~~~v~ 347 (372)
|.+++.
T Consensus 208 l~~~l~ 213 (215)
T TIGR02187 208 FLEYIL 213 (215)
T ss_pred HHHHHH
Confidence 988864
No 63
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.74 E-value=4.5e-08 Score=82.73 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=49.5
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV 331 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~ 331 (372)
++.+.+++.+ ++.|+|+||++|+.+++.+.+-+ ...+.+++.|.+. ..++.++++|++.||.++ +|+.
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~------~~~l~~~~~v~~vPt~l~fk~G~~ 87 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK------APFLVEKLNIKVLPTVILFKNGKT 87 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc------CHHHHHHCCCccCCEEEEEECCEE
Confidence 4455555444 66777999999999998887633 2245666666543 357888999999999877 7865
No 64
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.73 E-value=3.5e-08 Score=87.69 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=62.6
Q ss_pred HHHHHHHhhhcC----eeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeE-E
Q 017385 256 ALSLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I 327 (372)
Q Consensus 256 ~~~la~~L~~~g----~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~-i 327 (372)
..++-+++.+.+ ++.|||.|||+|+.+.|.+.+-+. +.+.++.+|.|+ ..++.++++|++.||.+ +
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe------~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE------VPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC------CHHHHHHcCccCCCcEEEE
Confidence 445666665333 677889999999999998877442 224456677664 35899999999887755 4
Q ss_pred --CCE-E--eeec--------cCCchhhhhhhccc
Q 017385 328 --NGQ-V--FIVG--------SQWRARPVRPRQGI 349 (372)
Q Consensus 328 --~G~-~--y~~G--------~rsl~~L~~~v~~~ 349 (372)
||+ . +.+| ..+.++|.+.++.+
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 777 3 5588 67888888877644
No 65
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.73 E-value=2.2e-08 Score=85.55 Aligned_cols=71 Identities=7% Similarity=-0.012 Sum_probs=54.3
Q ss_pred eeEEeccC--CHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCC
Q 017385 268 AKMYGAFW--CSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~W--C~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rs 338 (372)
+.+|+|.| ||+|++++|.|.+-+. +++.++.++.|. ..+++.+++|++.||.++ ||+. .+.|.++
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~------~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~ 104 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD------EQALAARFGVLRTPALLFFRDGRYVGVLAGIRD 104 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC------CHHHHHHcCCCcCCEEEEEECCEEEEEEeCccC
Confidence 88999997 9999999999877432 234444454443 248899999999999887 8876 3389999
Q ss_pred chhhhh
Q 017385 339 RARPVR 344 (372)
Q Consensus 339 l~~L~~ 344 (372)
.++|..
T Consensus 105 ~~e~~~ 110 (111)
T cd02965 105 WDEYVA 110 (111)
T ss_pred HHHHhh
Confidence 998863
No 66
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.73 E-value=1.7e-08 Score=84.47 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCCc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQWR 339 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl 339 (372)
++.|+|+||++|+.+++.|.+-+. ..+.++++|.+. . +++++++|+++||.++ +|+. ...|.+++
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 567889999999999999876332 235556666542 3 7889999999999877 7876 22564443
No 67
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.70 E-value=3.9e-08 Score=80.27 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=58.7
Q ss_pred HHHhhhc-CeeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeecc
Q 017385 260 AKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGS 336 (372)
Q Consensus 260 a~~L~~~-g~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~ 336 (372)
++.|++- .++.|.++||++|...++.+.+-+. .++.+...|.+. ..++..+|+|.+.||.++||+....|.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~~G~ 80 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFGFGR 80 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEEeCC
Confidence 3345443 6899999999999999998877432 246665555443 347888999999999999998855897
Q ss_pred CCchhhh
Q 017385 337 QWRARPV 343 (372)
Q Consensus 337 rsl~~L~ 343 (372)
.+.+++.
T Consensus 81 ~~~~e~~ 87 (89)
T cd03026 81 MTLEEIL 87 (89)
T ss_pred CCHHHHh
Confidence 7777764
No 68
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-08 Score=97.69 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=73.3
Q ss_pred cccCCChhHHHHHHHhhhcC-eeEEeccCCHHHHHHHHHHhHHh---hc--cCceEEcCCCCCCCCcchHhhhhhcCCcc
Q 017385 248 ITTSSSPFALSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYRKGTKIAKACSDAKIEG 321 (372)
Q Consensus 248 itt~s~~~~~~la~~L~~~g-~k~YgA~WC~hC~~qk~~fgkea---~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~g 321 (372)
+-.++..++..+-+.-++.- .+.||||||++|+++.|...|-+ .. ++.+|+||. .+++...+|||+
T Consensus 26 ~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--------~p~vAaqfgiqs 97 (304)
T COG3118 26 KDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--------EPMVAAQFGVQS 97 (304)
T ss_pred eechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--------chhHHHHhCcCc
Confidence 33444455555555555544 67899999999999999888733 22 367888885 358888999999
Q ss_pred cceeEE--CCEE---eeeccCCchhhhhhhcccccc
Q 017385 322 FPTWVI--NGQV---FIVGSQWRARPVRPRQGIWLS 352 (372)
Q Consensus 322 yPTw~i--~G~~---y~~G~rsl~~L~~~v~~~~~~ 352 (372)
.||.+. +|+. + .|.++-+.|.+|+.++...
T Consensus 98 IPtV~af~dGqpVdgF-~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 98 IPTVYAFKDGQPVDGF-QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCeEEEeeCCcCcccc-CCCCcHHHHHHHHHHhcCh
Confidence 999555 8876 6 9999999999999988776
No 69
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.1e-08 Score=82.44 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=51.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCCchh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQWRAR 341 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl~~ 341 (372)
+..|+|.|||.|+.++|.|.+-+.+ .+.++.+|.|. + .++|++++|++.||..+ +|+. ...|.-. ++
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~-~~ 97 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK-AE 97 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-C-----HhHHHhcCceEeeEEEEEECCEEEEEEecCCH-HH
Confidence 6778899999999999999985533 24455555543 3 48899999999999777 7765 2255433 36
Q ss_pred hhhhhc
Q 017385 342 PVRPRQ 347 (372)
Q Consensus 342 L~~~v~ 347 (372)
|++.+.
T Consensus 98 l~~~i~ 103 (106)
T KOG0907|consen 98 LEKKIA 103 (106)
T ss_pred HHHHHH
Confidence 665544
No 70
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.7e-08 Score=104.29 Aligned_cols=68 Identities=24% Similarity=0.470 Sum_probs=49.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--------cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE------C---CE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---GQ 330 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--------~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i------~---G~ 330 (372)
.+.|++.|||||.+.+|.|+|-|.+ ++..|||+.+. | ..+|++++|++|||... | |+
T Consensus 61 lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G~ 134 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDGS 134 (606)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCCC
Confidence 4445599999999999999984422 35689998543 3 38999999999999887 2 55
Q ss_pred EeeeccCCchhh
Q 017385 331 VFIVGSQWRARP 342 (372)
Q Consensus 331 ~y~~G~rsl~~L 342 (372)
.+ +|....+++
T Consensus 135 ~~-~~~~~~~ei 145 (606)
T KOG1731|consen 135 DV-SGPVIPSEI 145 (606)
T ss_pred cc-cCCcchhhH
Confidence 56 664444433
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.63 E-value=2.9e-08 Score=81.51 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=46.4
Q ss_pred eeEEeccCCHHHHHHHHHHhH--Hhhc----cCceEEcCCCCCCC--------------CcchHhhhhhcCCcccceeEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGS--EAVK----QLNYVECFPDGYRK--------------GTKIAKACSDAKIEGFPTWVI 327 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgk--ea~~----~l~~VeC~~d~~~~--------------~~k~~~lC~~~~I~gyPTw~i 327 (372)
+.+|++||||+|++++++..+ +..+ .+.++..+.+...+ .....++.+++||+|+||+++
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~~ 88 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIVF 88 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEEE
Confidence 678889999999999876653 1112 34444443332110 011356888999999999888
Q ss_pred ---CCE---EeeeccCCchhhhhh
Q 017385 328 ---NGQ---VFIVGSQWRARPVRP 345 (372)
Q Consensus 328 ---~G~---~y~~G~rsl~~L~~~ 345 (372)
+|+ ++ .|..+.++|.++
T Consensus 89 ~d~~G~~v~~~-~G~~~~~~l~~~ 111 (112)
T PF13098_consen 89 LDKDGKIVYRI-PGYLSPEELLKM 111 (112)
T ss_dssp CTTTSCEEEEE-ESS--HHHHHHH
T ss_pred EcCCCCEEEEe-cCCCCHHHHHhh
Confidence 376 35 999999999875
No 72
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.60 E-value=8.4e-08 Score=74.71 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=51.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhcc--CceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~--l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
+++|+++|||+|++.++.+.+.. .. ..+++.+.+.... .....+-+..++.++|+.++||+.. .|..++.++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~-i~~~~~~~~v~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~i-gg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN-VKPAYEVVELDQLSNGS-EIQDYLEEITGQRTVPNIFINGKFI-GGCSDLLALY 75 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC-CCCCCEEEEeeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEE-cCHHHHHHHH
Confidence 46899999999999999998853 23 5578887653211 1112245557999999999999876 7765554443
No 73
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.46 E-value=4.3e-07 Score=69.43 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=46.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhh--cCCcccceeEECCEEeeeccCCchhhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD--AKIEGFPTWVINGQVFIVGSQWRARPVRP 345 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~--~~I~gyPTw~i~G~~y~~G~rsl~~L~~~ 345 (372)
+++|+++|||+|++.++.+.+. ......+|.+.+. . ..+.-.+ .++.+.||.+++|... -..-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~--~---~~~~~~~~~~~~~~vP~i~~~~g~~-l~~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDE--G---AADRVVSVNNGNMTVPTVKFADGSF-LTNPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCH--h---HHHHHHHHhCCCceeCEEEECCCeE-ecCCCHHHHHHH
Confidence 6799999999999999999763 3334456665432 1 1222111 4899999998854443 335556666655
Q ss_pred h
Q 017385 346 R 346 (372)
Q Consensus 346 v 346 (372)
+
T Consensus 75 l 75 (77)
T TIGR02200 75 L 75 (77)
T ss_pred h
Confidence 4
No 74
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.1e-07 Score=93.57 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=58.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh-----ccC--ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE---CCE---Eeee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV-----KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VFIV 334 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~-----~~l--~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i---~G~---~y~~ 334 (372)
.++|+||||+|||+++++|.+-+. ..+ ..++|+. ...+|.+++|++|||.++ +.+ .| +
T Consensus 166 lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~-~ 236 (383)
T KOG0191|consen 166 LVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPGEEDIYYY-S 236 (383)
T ss_pred EEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCCCcccccc-c
Confidence 555669999999999999987431 222 3455552 358899999999999877 223 36 9
Q ss_pred ccCCchhhhhhhcccccc
Q 017385 335 GSQWRARPVRPRQGIWLS 352 (372)
Q Consensus 335 G~rsl~~L~~~v~~~~~~ 352 (372)
|.|+.+.+.+|++.....
T Consensus 237 ~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 237 GLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ccccHHHHHHHHHhhcCC
Confidence 999999999999887655
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.44 E-value=3.7e-07 Score=77.80 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCcc--cceeEE---
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI--- 327 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~g--yPTw~i--- 327 (372)
+++.|+.-.+.=+++|+|+||++|+++++.|.+.+. ...++|.++.|..+. ..-.++++.| +||.++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEECC
Confidence 344444433334778889999999999998876321 223455554443211 2224688987 999777
Q ss_pred CCEE
Q 017385 328 NGQV 331 (372)
Q Consensus 328 ~G~~ 331 (372)
+|+.
T Consensus 86 ~Gk~ 89 (117)
T cd02959 86 SGDV 89 (117)
T ss_pred CCCC
Confidence 5654
No 76
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.40 E-value=8.5e-07 Score=76.30 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHhhhcC----eeEEeccCCHHHHHHHHHHhHHhh--cc-CceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 258 SLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAV--KQ-LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 258 ~la~~L~~~g----~k~YgA~WC~hC~~qk~~fgkea~--~~-l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
++-+++.+.+ +..|+|.|||.|+.+.|.|.+-|. .+ +.+..||.|. ..+++++++|+..||.++ |
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe------v~dva~~y~I~amPtfvffkn 77 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK------VPVYTQYFDISYIPSTIFFFN 77 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc------cHHHHHhcCceeCcEEEEEEC
Confidence 4445555442 778889999999999999988543 23 4566666654 468999999999999666 6
Q ss_pred CEE
Q 017385 329 GQV 331 (372)
Q Consensus 329 G~~ 331 (372)
|+.
T Consensus 78 gkh 80 (114)
T cd02986 78 GQH 80 (114)
T ss_pred CcE
Confidence 653
No 77
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.40 E-value=6.5e-07 Score=66.96 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=47.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRP 345 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~ 345 (372)
+++|+++|||+|+++++.+.+ . .++|.+.+.+.. . ...+++.+.+++.++|+++++|+.. .|. +.++|+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-~--~i~~~~~~i~~~-~-~~~~~~~~~~~~~~vP~i~~~~~~i-~g~-~~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-R--GIPFEEVDVDED-P-EALEELKKLNGYRSVPVVVIGDEHL-SGF-RPDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-C--CCCeEEEeCCCC-H-HHHHHHHHHcCCcccCEEEECCEEE-ecC-CHHHHHhh
Confidence 689999999999999999975 2 355444443321 1 1123344445899999999999776 775 34566553
No 78
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.34 E-value=8.9e-07 Score=71.48 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCc--ccceeEE--C--CEE--eeecc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQV--FIVGS 336 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~--gyPTw~i--~--G~~--y~~G~ 336 (372)
+.+|+++||++|++.++.|.+-|. .++.++..|.|. ..++++.+||+ ++||.++ + |+. +..|.
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh------hHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 677889999999999999887442 346666666553 34789999999 9999887 4 555 32344
Q ss_pred CCchhhhhhhccc
Q 017385 337 QWRARPVRPRQGI 349 (372)
Q Consensus 337 rsl~~L~~~v~~~ 349 (372)
.+.++|.+|++++
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 5889999998765
No 79
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.34 E-value=6.7e-07 Score=89.69 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=54.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hc---cCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC-E----Ee
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q----VF 332 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~---~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G-~----~y 332 (372)
+++|+|+||+||+++++.|.+-+ .. ++. .+||+.+ +.+. ++|++|||..+ +| + .|
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCceEe
Confidence 77788999999999998886622 22 333 4666532 2333 89999999777 44 2 37
Q ss_pred eeccCCchhhhhhhccccccc
Q 017385 333 IVGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 333 ~~G~rsl~~L~~~v~~~~~~~ 353 (372)
.|.++.++|.+|++.....+
T Consensus 438 -~g~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 438 -DGDRTLEDFSKFIAKHATFP 457 (462)
T ss_pred -cCcCCHHHHHHHHHhcCCCC
Confidence 99999999999988765444
No 80
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=1.7e-06 Score=76.17 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhh----ccCce--EEcCCCCCCC--------------CcchHhhhh
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNY--VECFPDGYRK--------------GTKIAKACS 315 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~----~~l~~--VeC~~d~~~~--------------~~k~~~lC~ 315 (372)
..++.+.-.+.=+.+|+|+||++|+++.+.|.+.+. ..+.. |+++.+...- ..+..++++
T Consensus 53 ~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 53 KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 345555323334677779999999998877665321 12443 4444221000 001347889
Q ss_pred hcCCcccceeEE---CCEE---eeeccCCchhhhhhhcccc
Q 017385 316 DAKIEGFPTWVI---NGQV---FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 316 ~~~I~gyPTw~i---~G~~---y~~G~rsl~~L~~~v~~~~ 350 (372)
+++|+++|+-++ +|+. + .|..+.++|.++++.++
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~~-~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKVI-TGEMTEEQLEEYLEKIK 172 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEEE-eCCCCHHHHHHHHHHhc
Confidence 999999998554 5764 5 89999999999877543
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.30 E-value=4.3e-07 Score=89.56 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=59.2
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhc---c-------CceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE----Ee
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VF 332 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~---~-------l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~----~y 332 (372)
+-|+|.||+.-++++|.|.+.|.+ + ...|||+. +.++..+|.|.-|||.++ ||+ .|
T Consensus 18 v~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~--------e~~ia~ky~I~KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 18 VNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK--------EDDIADKYHINKYPTLKVFRNGEMMKREY 89 (375)
T ss_pred eeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch--------hhHHhhhhccccCceeeeeeccchhhhhh
Confidence 335599999999999999874422 1 24799985 458999999999999887 885 39
Q ss_pred eeccCCchhhhhhhcccc
Q 017385 333 IVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 333 ~~G~rsl~~L~~~v~~~~ 350 (372)
.|.|+.+.|.+|+++..
T Consensus 90 -Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 90 -RGQRSVEALIEFIEKQL 106 (375)
T ss_pred -ccchhHHHHHHHHHHHh
Confidence 99999999999998653
No 82
>PHA03050 glutaredoxin; Provisional
Probab=98.26 E-value=3e-06 Score=71.80 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=57.4
Q ss_pred HHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeec
Q 017385 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVG 335 (372)
Q Consensus 258 ~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G 335 (372)
.+.+.+++.-+++|..+|||+|++.|..|.+.... ...++|.+..+.+. .-+.++=+..|-+..|+.+|||+.. -|
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~-~~~~~l~~~tG~~tVP~IfI~g~~i-GG 82 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPEN-ELRDYFEQITGGRTVPRIFFGKTSI-GG 82 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCH-HHHHHHHHHcCCCCcCEEEECCEEE-eC
Confidence 34455667779999999999999999999763211 23456665322111 1123343446889999999999877 88
Q ss_pred cCCchhhhh
Q 017385 336 SQWRARPVR 344 (372)
Q Consensus 336 ~rsl~~L~~ 344 (372)
-.++.+|.+
T Consensus 83 ~ddl~~l~~ 91 (108)
T PHA03050 83 YSDLLEIDN 91 (108)
T ss_pred hHHHHHHHH
Confidence 777766653
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.25 E-value=2.9e-06 Score=71.40 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=46.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhcc-CceEEcCCCCCCC-----------------CcchHhhhhhcCCcccce-eEE-
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDGYRK-----------------GTKIAKACSDAKIEGFPT-WVI- 327 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~-l~~VeC~~d~~~~-----------------~~k~~~lC~~~~I~gyPT-w~i- 327 (372)
+.+|+|.|||+|+++.+.+.+-+.+. +..|..+.++... -.++.+++++++|+++|+ .++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld 108 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLID 108 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEEC
Confidence 67788999999999998776532222 3333333210000 001346788999999995 555
Q ss_pred -CCEE---eeeccCCchhh
Q 017385 328 -NGQV---FIVGSQWRARP 342 (372)
Q Consensus 328 -~G~~---y~~G~rsl~~L 342 (372)
+|+. + .|..+.++|
T Consensus 109 ~~G~v~~~~-~G~~~~~~~ 126 (127)
T cd03010 109 GDGIIRYKH-VGPLTPEVW 126 (127)
T ss_pred CCceEEEEE-eccCChHhc
Confidence 5764 5 788887765
No 84
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.24 E-value=1.9e-06 Score=68.72 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=49.1
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhh--cCCcccceeEECCEEeeeccCCchhh
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSD--AKIEGFPTWVINGQVFIVGSQWRARP 342 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~--~~I~gyPTw~i~G~~y~~G~rsl~~L 342 (372)
.+++|+.+|||+|++.|+.+.+-.. ..++|.+.+.+.... ...++-+. .+++.+|+.++||+.. .|-.++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~~~~~~~vP~ifi~g~~i-gg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTVGKPVETVPQIFVDQKHI-GGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHHCCCCCcCCEEEECCEEE-cCHHHHHHH
Confidence 3789999999999999999887322 356666665543110 01222222 3468999999999887 776555555
Q ss_pred h
Q 017385 343 V 343 (372)
Q Consensus 343 ~ 343 (372)
.
T Consensus 79 ~ 79 (85)
T PRK11200 79 V 79 (85)
T ss_pred H
Confidence 4
No 85
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.4e-06 Score=83.87 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=58.7
Q ss_pred HHHHhhhcC----eeEEeccCCHHHHHHHHHHhHHhhccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE
Q 017385 259 LAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (372)
Q Consensus 259 la~~L~~~g----~k~YgA~WC~hC~~qk~~fgkea~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~ 330 (372)
+-..|...| ++.|.|.|||.||+.+|.|..-+-++.. +.++|.|. ..+.+..+||...||.++ ||+
T Consensus 12 f~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~------c~~taa~~gV~amPTFiff~ng~ 85 (288)
T KOG0908|consen 12 FQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE------CRGTAATNGVNAMPTFIFFRNGV 85 (288)
T ss_pred HHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH------hhchhhhcCcccCceEEEEecCe
Confidence 444555566 6667799999999999999985544322 45555543 234556799999999887 886
Q ss_pred E---eeeccCCchhhhhhhccccc
Q 017385 331 V---FIVGSQWRARPVRPRQGIWL 351 (372)
Q Consensus 331 ~---y~~G~rsl~~L~~~v~~~~~ 351 (372)
+ + +|. +...|++.|.++..
T Consensus 86 kid~~-qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 86 KIDQI-QGA-DASGLEEKVAKYAS 107 (288)
T ss_pred Eeeee-cCC-CHHHHHHHHHHHhc
Confidence 5 4 665 55667777766643
No 86
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.23 E-value=3.4e-06 Score=72.89 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=51.2
Q ss_pred HHHHHhhhc--C--eeEEec-------cCCHHHHHHHHHHhHHh---hccCceEEcCCCCCC-CCcchHhhhhhcCCc-c
Q 017385 258 SLAKHLHAI--G--AKMYGA-------FWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYR-KGTKIAKACSDAKIE-G 321 (372)
Q Consensus 258 ~la~~L~~~--g--~k~YgA-------~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~-~~~k~~~lC~~~~I~-g 321 (372)
++-+.+.+. + ++.|+| +|||+|++++|.+.+-+ ..++.+++|+.|... -..+..++-.+++|+ +
T Consensus 11 ~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~ 90 (119)
T cd02952 11 EFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTG 90 (119)
T ss_pred HHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccC
Confidence 444555542 2 677889 99999999998876622 225677888765421 001134677789999 9
Q ss_pred cceeEE--CCEEeeeccC
Q 017385 322 FPTWVI--NGQVFIVGSQ 337 (372)
Q Consensus 322 yPTw~i--~G~~y~~G~r 337 (372)
.||+++ +|++. .|..
T Consensus 91 iPT~~~~~~~~~l-~~~~ 107 (119)
T cd02952 91 VPTLLRWKTPQRL-VEDE 107 (119)
T ss_pred CCEEEEEcCCcee-cchh
Confidence 999888 45554 4443
No 87
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.22 E-value=2.7e-06 Score=66.18 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=52.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVR 344 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~ 344 (372)
+++|+++|||+|++.++.+.+. .....++|.+.+.... .-+..+-+..|+.++|+.+++|+.. -|...+.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~-~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~~~P~v~~~g~~i-gg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL-GVKPAVVELDQHEDGS-EIQDYLQELTGQRTVPNVFIGGKFI-GGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc-CCCcEEEEEeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEE-cCHHHHHHHHH
Confidence 6799999999999999999984 3355677877653211 0012233446899999999999876 66666655543
No 88
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.21 E-value=1.2e-05 Score=73.18 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=54.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCC-----------------cchHhhhhhcCCcccce-eEE--
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-WVI-- 327 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~-----------------~k~~~lC~~~~I~gyPT-w~i-- 327 (372)
+..|+|.|||+|+++.+.+.+-..+.+.++-.+.+..... ++..++.++++|.++|| .+|
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~ 151 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDG 151 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECC
Confidence 7778899999999999887653323444444432211000 01224566899999995 666
Q ss_pred CCEE--eeeccCCchhhhhhhcccc
Q 017385 328 NGQV--FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 328 ~G~~--y~~G~rsl~~L~~~v~~~~ 350 (372)
+|+. ...|..+.++|++.++.+.
T Consensus 152 ~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 152 NGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHH
Confidence 5764 2289999999998887765
No 89
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.20 E-value=4.2e-06 Score=66.11 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=48.7
Q ss_pred cCeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhh
Q 017385 266 IGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRP 345 (372)
Q Consensus 266 ~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~ 345 (372)
..+++|+.+|||+|++.|+.+.+. .-....++++.+. . ..++-+..|.+.+|..++||+.. .|. ++|.+|
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~i-gG~---~~l~~~ 77 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLI-GGS---DELEAY 77 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEE-cCH---HHHHHH
Confidence 348999999999999999999763 2233345554332 1 23444457899999999999876 665 455544
No 90
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.19 E-value=2.5e-06 Score=63.57 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
+++|+.+|||+|++.|+.+.+. .-...++|.+.+. . .+.++-+..|..++|+.++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~--~--~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDE--E--AREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSH--H--HHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccch--h--HHHHHHHHcCCCccCEEEECCEE
Confidence 5799999999999999999763 3334456666542 1 13344444599999999999974
No 91
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.19 E-value=5e-06 Score=75.85 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=44.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~ 331 (372)
++.|+|+|||+|+.+.+.+.+-|.+ .+.++.++.+. . +++.+++|++.||+++ +|+.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~------~-~l~~~f~v~~vPTlllyk~G~~ 147 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA------T-GASDEFDTDALPALLVYKGGEL 147 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc------h-hhHHhCCCCCCCEEEEEECCEE
Confidence 6678899999999999998875432 35667776542 2 6788999999999888 7875
No 92
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.17 E-value=2.9e-06 Score=66.78 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=48.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCc-eEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeec-cCCchhhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVG-SQWRARPVRP 345 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~-~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G-~rsl~~L~~~ 345 (372)
++.| .++||+|.++.+...+. ..+.+ -+|+..- . ...++ .+|||.+.||.+|||+....| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~-~~~~~i~~ei~~~--~---~~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEA-AEELGIEVEIIDI--E---DFEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHH-HHHTTEEEEEEET--T---THHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHH-HHhcCCeEEEEEc--c---CHHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 5665 77899999999888663 33333 1244211 1 13455 899999999999999985599 8888999887
Q ss_pred hc
Q 017385 346 RQ 347 (372)
Q Consensus 346 v~ 347 (372)
++
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 63
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.15 E-value=7.4e-06 Score=71.05 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=45.1
Q ss_pred hhHHHHHHHhhhcCeeEEeccCCHHHHHHHH-HHhH-Hhh----ccCceEEcCCCCCCCCcc-hHhhhh-hcCCccccee
Q 017385 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGS-EAV----KQLNYVECFPDGYRKGTK-IAKACS-DAKIEGFPTW 325 (372)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WC~hC~~qk~-~fgk-ea~----~~l~~VeC~~d~~~~~~k-~~~lC~-~~~I~gyPTw 325 (372)
+.+++.|+.=.+.=+.+|+|.||+.|+++++ .|.+ +-. +..-.|+.|.+..+...+ ..+..+ .+++.|+||+
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 3445555554443366688999999999974 5655 222 234467777654221000 011111 2599999998
Q ss_pred EE---CCEE
Q 017385 326 VI---NGQV 331 (372)
Q Consensus 326 ~i---~G~~ 331 (372)
++ +|+.
T Consensus 85 vfl~~~G~~ 93 (124)
T cd02955 85 VFLTPDLKP 93 (124)
T ss_pred EEECCCCCE
Confidence 88 5654
No 94
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.15 E-value=4.6e-06 Score=69.31 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=54.8
Q ss_pred HhhhcCeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchh
Q 017385 262 HLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRAR 341 (372)
Q Consensus 262 ~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~ 341 (372)
.+++.-+++|+.+|||+|++.|+.+.+ ......++|.+.+.... ..+..+-+..|-+.+|..+++|+.. .|-.++.+
T Consensus 4 ~i~~~~Vvvysk~~Cp~C~~ak~~L~~-~~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~i-GG~ddl~~ 80 (99)
T TIGR02189 4 MVSEKAVVIFSRSSCCMCHVVKRLLLT-LGVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLV-GGLENVMA 80 (99)
T ss_pred hhccCCEEEEECCCCHHHHHHHHHHHH-cCCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEE-cCHHHHHH
Confidence 455666999999999999999999986 33344577776432111 0112233335788999999999877 88777666
Q ss_pred hh
Q 017385 342 PV 343 (372)
Q Consensus 342 L~ 343 (372)
|.
T Consensus 81 l~ 82 (99)
T TIGR02189 81 LH 82 (99)
T ss_pred HH
Confidence 64
No 95
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.15 E-value=4.1e-06 Score=75.19 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=53.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCC-----------------cchHhhhhhcCCcccce-eEE--
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-WVI-- 327 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~-----------------~k~~~lC~~~~I~gyPT-w~i-- 327 (372)
+.+|+|.|||+|+++.+.+.+-+.+.+.++-.+.+....+ .+..++.+++++.++|| .+|
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~ 146 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDG 146 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcC
Confidence 6777899999999998777653223344333332211000 01124566899999995 666
Q ss_pred CCEE---eeeccCCchhhhhhhcccc
Q 017385 328 NGQV---FIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 328 ~G~~---y~~G~rsl~~L~~~v~~~~ 350 (372)
||+. + .|..+.++|++.++++.
T Consensus 147 ~G~i~~~~-~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 147 NGVILYRH-AGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CceEEEEE-eccCCHHHHHHHHHHHh
Confidence 5774 4 79999999988876653
No 96
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.13 E-value=3.9e-06 Score=62.18 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=48.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARP 342 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L 342 (372)
+++|+++|||+|++.++.+.+. .++|.+.+.+.... ...++-+..+...+|+.++||+.. .|...+.+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~---~i~~~~~di~~~~~--~~~~l~~~~~~~~~P~~~~~~~~i-gg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL---GIEFEEIDILEDGE--LREELKELSGWPTVPQIFINGEFI-GGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---CCcEEEEECCCCHH--HHHHHHHHhCCCCcCEEEECCEEE-ecHHHHHHh
Confidence 6899999999999999999874 35655554432111 123444456889999999999887 776555554
No 97
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.12 E-value=6e-06 Score=80.28 Aligned_cols=93 Identities=12% Similarity=-0.000 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCC---CCcchHhhhhhcCCcccceeEE--C
Q 017385 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~---~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
..+++.-.+.++.+|+|.|||+|+++++.+.+-+ .-.+-.|+.|.+... .......+.+++||+++||.++ +
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 4454444566788999999999999998765422 112334555432100 0001235678899999999777 2
Q ss_pred -CEE---eeeccCCchhhhhhhccc
Q 017385 329 -GQV---FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 329 -G~~---y~~G~rsl~~L~~~v~~~ 349 (372)
|+. ...|..+.++|.+.+...
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 432 225999999998876544
No 98
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.12 E-value=4.7e-06 Score=65.08 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=51.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVR 344 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~ 344 (372)
+++|+.+|||+|++.++.+.+. .-....++++.+.. .+.++-...|..++|+.++||+.. -|..++.++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~~----~~~~~~~~~g~~~vP~i~i~g~~i-gg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDPA----LRDEMMQRSGRRTVPQIFIGDVHV-GGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCHH----HHHHHHHHhCCCCcCEEEECCEEE-cChHHHHHHHH
Confidence 4799999999999999999863 33445566654321 133444446889999999999876 77777777654
No 99
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.12 E-value=4.2e-06 Score=67.41 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcC--CcccceeEECCEEeeeccCCchhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~--I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
+++|+.+|||+|++.|+++.+...+ .++|.+.+.+.... ...++-...+ ++..|+.++||+.. -|-.++.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~--~~~~l~~~~g~~~~tVP~ifi~g~~i-gG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI--SKADLEKTVGKPVETVPQIFVDEKHV-GGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH--HHHHHHHHhCCCCCCcCeEEECCEEe-cCHHHHHHHH
Confidence 6799999999999999999764222 35666665542111 0122333334 58999999999876 7776555554
No 100
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.08 E-value=7.9e-06 Score=67.99 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=53.9
Q ss_pred HHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCC-----------------CcchHhhhhhcCC
Q 017385 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK-----------------GTKIAKACSDAKI 319 (372)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~-----------------~~k~~~lC~~~~I 319 (372)
.+++..-.+.-+.+|+++||++|+++.+.+.+- .+++..+-..-|..+. ..+..++++.++|
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i 91 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQL-AADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV 91 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHH-HhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC
Confidence 334433334457778899999999998877652 2334332221111000 0012478999999
Q ss_pred cccceeEE---CCEE-eeeccCCchhhhhh
Q 017385 320 EGFPTWVI---NGQV-FIVGSQWRARPVRP 345 (372)
Q Consensus 320 ~gyPTw~i---~G~~-y~~G~rsl~~L~~~ 345 (372)
.+.||.++ +|.+ ...|..+.++|.+-
T Consensus 92 ~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 92 SVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999777 4533 23888999888753
No 101
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.07 E-value=8.6e-06 Score=73.02 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=51.3
Q ss_pred hhcCeeEEeccCCHHHHHHHHHHhHHhhc-cCc--eEEcCCCCCC--CC--cchHhhh-hhc---CCcccceeEE---CC
Q 017385 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR--KG--TKIAKAC-SDA---KIEGFPTWVI---NG 329 (372)
Q Consensus 264 ~~~g~k~YgA~WC~hC~~qk~~fgkea~~-~l~--~VeC~~d~~~--~~--~k~~~lC-~~~---~I~gyPTw~i---~G 329 (372)
.+..+.+|+|+|||+|++..|.+.+-+.+ .+. .|+.|.+... .. ....+.- ..+ +|+++||-++ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 44459999999999999999887653211 233 3555432100 00 0001222 234 8999999555 44
Q ss_pred EE---eeeccCCchhhhhhhcc
Q 017385 330 QV---FIVGSQWRARPVRPRQG 348 (372)
Q Consensus 330 ~~---y~~G~rsl~~L~~~v~~ 348 (372)
+. ...|..+.++|++.+.+
T Consensus 130 ~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CEEEEEeecccCHHHHHHHHHH
Confidence 42 23899999999887654
No 102
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.06 E-value=1.1e-05 Score=62.44 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=48.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVR 344 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~ 344 (372)
+++|+.++||+|++.++.+.+. .++|-+.+.+... +..+...+.|..++|+.+++|+.. -|.-+.++|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~---~i~~~~~di~~~~---~~~~~~~~~g~~~vP~v~~~g~~~-~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH---GIAFEEINIDEQP---EAIDYVKAQGFRQVPVIVADGDLS-WSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC---CCceEEEECCCCH---HHHHHHHHcCCcccCEEEECCCcE-EeccCHHHHHh
Confidence 4799999999999999999862 4555444433211 134445567999999999988766 34455666654
No 103
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.04 E-value=1e-05 Score=62.04 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=49.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCc-ccceeEECCEEeeeccCCchhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVFIVGSQWRARPVR 344 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~-gyPTw~i~G~~y~~G~rsl~~L~~ 344 (372)
+++|+.+|||+|++.|..+.+. .++|-+.+.+.. . ..+.++=+..+.. ++|+.++||+.. -|..++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---~i~~~~i~i~~~-~-~~~~~~~~~~~~~~~vP~v~i~g~~i-gg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---GVDYEEIDVDGD-P-ALREEMINRSGGRRTVPQIFIGDVHI-GGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---CCcEEEEECCCC-H-HHHHHHHHHhCCCCccCEEEECCEEE-eChHHHHHHHh
Confidence 6799999999999999999863 455544444321 1 1123333445776 999999999887 88777777654
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.03 E-value=6.6e-06 Score=63.62 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=48.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
++.|+.+|||+|++.++.+.+ ..-...++|++.+. ....++-+..+-..+|+.++||+.. .|-.++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-~gi~~~~~di~~~~----~~~~el~~~~g~~~vP~v~i~~~~i-Gg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-KGLPYVEINIDIFP----ERKAELEERTGSSVVPQIFFNEKLV-GGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-CCCceEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEE-eCHHHHHhhc
Confidence 689999999999999999986 23233445554322 1133455556778999999999876 7766666554
No 105
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.98 E-value=2.3e-05 Score=60.27 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=47.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPR 346 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v 346 (372)
+++|..+|||+|++.|+.+.+. ......+|.+.+. . ...+=...|...+|..++||+.. .| .++|.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~i-gg---~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELI-GG---SDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEE-eC---HHHHHHHh
Confidence 7899999999999999999863 2233445555332 1 12332336899999999999865 55 56666654
No 106
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.96 E-value=2.4e-05 Score=82.67 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=52.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh----ccCceEEcCCCCCC----------------------CCcchHhhhhhcCCcc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYR----------------------KGTKIAKACSDAKIEG 321 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~----~~l~~VeC~~d~~~----------------------~~~k~~~lC~~~~I~g 321 (372)
++.|+|+|||+|+++.|.+.+-+. +.+..|-+..++.+ -..+..++.+.++|++
T Consensus 60 vV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g 139 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISV 139 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCC
Confidence 778889999999999887765211 12333332110000 0001346788999999
Q ss_pred ccee-EE--CCEE--eeeccCCchhhhhhhc
Q 017385 322 FPTW-VI--NGQV--FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 322 yPTw-~i--~G~~--y~~G~rsl~~L~~~v~ 347 (372)
+||. +| +|+. ...|..+.++|.++++
T Consensus 140 iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 140 YPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 9997 44 5765 3399999999999877
No 107
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.95 E-value=1.9e-05 Score=73.23 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=45.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rs 338 (372)
++.|||+||++|+.+.+.|.+-|.+ .+.+++++.+ +....++|++.||.++ ||+. .+.|..+
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~ 173 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLE 173 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchh
Confidence 5667799999999999999875533 4567777753 2245799999999877 7875 2255433
No 108
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.94 E-value=2.3e-05 Score=64.85 Aligned_cols=81 Identities=7% Similarity=0.028 Sum_probs=57.8
Q ss_pred HHHHHhhhcCeeEEe-----ccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEe
Q 017385 258 SLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVF 332 (372)
Q Consensus 258 ~la~~L~~~g~k~Yg-----A~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y 332 (372)
.+.+.+++..+++|. ++|||+|++.|++|.+. .++|.+.|.+... .-+..+.+..|-+.+|..+|||+..
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---~i~~~~~di~~~~--~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC---GVPFAYVNVLEDP--EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc---CCCEEEEECCCCH--HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 455567777799994 39999999999999863 4666665543211 1234555567888999999999876
Q ss_pred eeccCCchhhhh
Q 017385 333 IVGSQWRARPVR 344 (372)
Q Consensus 333 ~~G~rsl~~L~~ 344 (372)
-|-.++.+|.+
T Consensus 79 -GG~ddl~~l~~ 89 (97)
T TIGR00365 79 -GGCDIIMEMYQ 89 (97)
T ss_pred -eChHHHHHHHH
Confidence 88777777653
No 109
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.2e-05 Score=61.99 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=52.7
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhc-CCcccceeEECCEEeeeccCCchhhhh
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVFIVGSQWRARPVR 344 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~-~I~gyPTw~i~G~~y~~G~rsl~~L~~ 344 (372)
.+.+|.-+|||+|++.|+++.+ +.++|.+.+.+.... ++..+.-++. |.+.+|+.+|||+.. -|..++++|.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~---~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~i-gg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDR---KGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHV-GGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHH---cCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEE-eCcccHHHHHh
Confidence 3689999999999999999985 356666655443221 1233444444 899999999999866 77788888764
No 110
>smart00594 UAS UAS domain.
Probab=97.89 E-value=6.2e-05 Score=64.22 Aligned_cols=97 Identities=13% Similarity=-0.000 Sum_probs=63.1
Q ss_pred cccccCCChhHHHHHHHhhhcCeeEEeccCCHHHHHHHH-HHhHHhh----c-cCceEEcCCCCCCCCcchHhhhhhcCC
Q 017385 246 TEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV----K-QLNYVECFPDGYRKGTKIAKACSDAKI 319 (372)
Q Consensus 246 ~~itt~s~~~~~~la~~L~~~g~k~YgA~WC~hC~~qk~-~fgkea~----~-~l~~VeC~~d~~~~~~k~~~lC~~~~I 319 (372)
|.....|=..+++.|++-.+.-..++.++||+.|+++.. .|.++.. + +.-.+.+|.+... -.+++..+++
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e----g~~l~~~~~~ 84 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE----GQRVSQFYKL 84 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh----HHHHHHhcCc
Confidence 444554555555666655556688888999999999874 4554321 1 1123345543321 3578999999
Q ss_pred cccceeEE---CC-E----E--eeeccCCchhhhhhh
Q 017385 320 EGFPTWVI---NG-Q----V--FIVGSQWRARPVRPR 346 (372)
Q Consensus 320 ~gyPTw~i---~G-~----~--y~~G~rsl~~L~~~v 346 (372)
++|||+.+ +| + . +++|..+.++|.+++
T Consensus 85 ~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999888 33 2 1 448888888887754
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.88 E-value=2.9e-05 Score=53.67 Aligned_cols=58 Identities=21% Similarity=0.384 Sum_probs=39.6
Q ss_pred eEEeccCCHHHHHHHHHHhHH--hhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECC
Q 017385 269 KMYGAFWCSHCLEQKQMFGSE--AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgke--a~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G 329 (372)
.+|++.||++|+++++.+.+. ....+.++.++.++... ..+...++++.++|+.++.+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEEEe
Confidence 578899999999999888752 23456666665544322 11212468999999988843
No 112
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.87 E-value=4.8e-05 Score=61.05 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=49.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhh
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRP 345 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~ 345 (372)
+++|..+|||+|++.|+.+.+. .++|.+.+.+... +..+..++.|.+..|+.+++|+.. .|- +.++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~-~Gf-~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---GFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSW-SGF-RPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---CCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEE-ecC-CHHHHHHH
Confidence 7899999999999999999763 5666444443211 133445667889999999998765 554 45666554
No 113
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.84 E-value=4.2e-05 Score=70.73 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=55.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc-cCce--EEcCCCCCC-----CCcchHhhhhhcCC--cccceeEE---CCEE-e-
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNY--VECFPDGYR-----KGTKIAKACSDAKI--EGFPTWVI---NGQV-F- 332 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~-~l~~--VeC~~d~~~-----~~~k~~~lC~~~~I--~gyPTw~i---~G~~-y- 332 (372)
++.|+|.|||+|++..|.+.+-+.+ .+.+ |..|.++.. -......+...+++ .++||-++ +|+. +
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 8889999999999998776652211 2433 344322100 00012335567884 79999555 6754 1
Q ss_pred -eeccCCchhhhhhhccccccccc
Q 017385 333 -IVGSQWRARPVRPRQGIWLSRNE 355 (372)
Q Consensus 333 -~~G~rsl~~L~~~v~~~~~~~~~ 355 (372)
..|..+.++|++.+.++...+.+
T Consensus 153 ~~~G~~~~~~L~~~I~~ll~~~~~ 176 (181)
T PRK13728 153 LLQGATDAAGFMARMDTVLQMYGG 176 (181)
T ss_pred EEECCCCHHHHHHHHHHHHhhhcc
Confidence 38999999998887777655444
No 114
>PTZ00062 glutaredoxin; Provisional
Probab=97.83 E-value=5.5e-05 Score=71.07 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=57.3
Q ss_pred HHHHHHHhhhc-C--eeEEeccCCHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C
Q 017385 256 ALSLAKHLHAI-G--AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (372)
Q Consensus 256 ~~~la~~L~~~-g--~k~YgA~WC~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~ 328 (372)
..++.+..+.. | +.+|.|+|||.|+.+++.+.+-+. ..+.++.++. + ++|.+.||.++ |
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~----------d----~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL----------A----DANNEYGVFEFYQN 71 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc----------c----cCcccceEEEEEEC
Confidence 34555555522 3 667779999999999988876432 3577888863 2 89999999877 7
Q ss_pred CEE--eeeccCCchhhhhhhcccccc
Q 017385 329 GQV--FIVGSQWRARPVRPRQGIWLS 352 (372)
Q Consensus 329 G~~--y~~G~rsl~~L~~~v~~~~~~ 352 (372)
|+. +..|. +..+|.+.+.....+
T Consensus 72 g~~i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 72 SQLINSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred CEEEeeeeCC-CHHHHHHHHHHHcCC
Confidence 875 33665 477777777665444
No 115
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.82 E-value=2.3e-05 Score=66.36 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=46.4
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHH---hhc---cCc--eEEcCCCCCC----------------CCcchH
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE---AVK---QLN--YVECFPDGYR----------------KGTKIA 311 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgke---a~~---~l~--~VeC~~d~~~----------------~~~k~~ 311 (372)
.+++++.-.+.-+.+|+|+||++|+++.+.+.+- ..+ .+. .|..|.+... ......
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 3445544444458888999999999998776541 111 232 4555433100 001124
Q ss_pred hhhhhcCCcccceeEE---CCEE
Q 017385 312 KACSDAKIEGFPTWVI---NGQV 331 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i---~G~~ 331 (372)
.++++++|+++||.++ +|+.
T Consensus 90 ~~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHHcCCCCCCEEEEECCCCCE
Confidence 6788999999999666 5665
No 116
>PRK10638 glutaredoxin 3; Provisional
Probab=97.77 E-value=4.8e-05 Score=60.40 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=50.1
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhh
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
.+++|+.+|||+|++.+..+.+. .-....+|++.+. ....++-+..+...+|+.+++|+.. -|..++.+|.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~----~~~~~l~~~~g~~~vP~i~~~g~~i-gG~~~~~~~~ 73 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA----AKREEMIKRSGRTTVPQIFIDAQHI-GGCDDLYALD 73 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH----HHHHHHHHHhCCCCcCEEEECCEEE-eCHHHHHHHH
Confidence 37899999999999999999873 2233345555331 1134455557888999999999876 7776655554
No 117
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.76 E-value=8.8e-05 Score=62.02 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=60.6
Q ss_pred hHHHHHHHhhhcCeeEEeccCCHHHHHHHH-HHhHHhhc-cC----ceEEcCCCCCCCCcchHhhhhhcCCcccceeEE-
Q 017385 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL----NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WC~hC~~qk~-~fgkea~~-~l----~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i- 327 (372)
.+++.|++=.+.=++++.++||+.|+.++. .|..+... .+ -.+..|.+. ++..+++..++++++||..+
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~----~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS----SEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC----ccHHHHHHHhCccCCCeEEEE
Confidence 445555554444577888999999999974 46543321 12 234555432 12457888999999999766
Q ss_pred ---CCEE--eeeccCCchhhhhhhccc
Q 017385 328 ---NGQV--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 328 ---~G~~--y~~G~rsl~~L~~~v~~~ 349 (372)
+|+. +..|..+.+++.+.+++.
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 3654 348999999988776654
No 118
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.75 E-value=3.5e-05 Score=65.80 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred hHHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHH---hhc---cCc--eEEcCCCCC------------C----CC-cc
Q 017385 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE---AVK---QLN--YVECFPDGY------------R----KG-TK 309 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgke---a~~---~l~--~VeC~~d~~------------~----~~-~k 309 (372)
..+++++.-.+.=+.+|+|+||++|+++.+.+.+- ..+ .+. .|..+.+.. . .. ..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 34455544334447788899999999998776541 111 233 455554310 0 00 11
Q ss_pred hHhhhhhcCCcccceeEE---CCEE
Q 017385 310 IAKACSDAKIEGFPTWVI---NGQV 331 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i---~G~~ 331 (372)
...+.+.++|.++||.++ +|+.
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCE
Confidence 235566799999999775 5665
No 119
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.73 E-value=6e-05 Score=59.63 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=41.8
Q ss_pred hhcCeeEEeccCCHHHHHHHHHHhHHh--h--ccCc--eEEcCCC-CCC---------CC-----cchHhhhhhcCCccc
Q 017385 264 HAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPD-GYR---------KG-----TKIAKACSDAKIEGF 322 (372)
Q Consensus 264 ~~~g~k~YgA~WC~hC~~qk~~fgkea--~--~~l~--~VeC~~d-~~~---------~~-----~k~~~lC~~~~I~gy 322 (372)
.+.-+.+|+++||++|+++.+.+.+.. . ..+. .|.++++ ... .. .+..++.+++++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 344578888999999999987776522 1 2233 4556542 000 00 001367888999999
Q ss_pred ceeEE---CCEE
Q 017385 323 PTWVI---NGQV 331 (372)
Q Consensus 323 PTw~i---~G~~ 331 (372)
|++++ +|+.
T Consensus 99 P~~~l~d~~g~v 110 (116)
T cd02966 99 PTTFLIDRDGRI 110 (116)
T ss_pred ceEEEECCCCcE
Confidence 99766 4554
No 120
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.72 E-value=5.6e-05 Score=61.35 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHhhhcCeeEEec-----cCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeec
Q 017385 261 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVG 335 (372)
Q Consensus 261 ~~L~~~g~k~YgA-----~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G 335 (372)
+.+++..+++|.- ||||+|++.|+.+.+. ......+|.+.|. ..+..+.+..|-+.+|+.++||+.. -|
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~----~~~~~l~~~~g~~tvP~vfi~g~~i-GG 76 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE----EVRQGLKEYSNWPTFPQLYVNGELV-GG 76 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH----HHHHHHHHHhCCCCCCEEEECCEEE-eC
Confidence 4456667888843 7999999999999873 3233345554331 1234555557889999999999877 88
Q ss_pred cCCchhhhh
Q 017385 336 SQWRARPVR 344 (372)
Q Consensus 336 ~rsl~~L~~ 344 (372)
-.++.+|.+
T Consensus 77 ~~~l~~l~~ 85 (90)
T cd03028 77 CDIVKEMHE 85 (90)
T ss_pred HHHHHHHHH
Confidence 877777653
No 121
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.71 E-value=9.3e-05 Score=58.54 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=36.7
Q ss_pred HHHHHhhhcCeeEEeccCCHHHHHHHHHH-hHHh-----hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE
Q 017385 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMF-GSEA-----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (372)
Q Consensus 258 ~la~~L~~~g~k~YgA~WC~hC~~qk~~f-gkea-----~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i 327 (372)
+.|+.=.+-=.++|+|.||++|+++++.+ ..+. .++.-.|+.|.+..+ .+. +..-+|+||+++
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~-----~~~--~~~~~~~P~~~~ 79 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED-----PNA--QFDRQGYPTFFF 79 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH-----HHH--HHHHCSSSEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC-----hhH--HhCCccCCEEEE
Confidence 33333333347888999999999999765 3221 233446666654321 122 222278999776
No 122
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.67 E-value=0.00016 Score=61.46 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=30.2
Q ss_pred hhhhhcCCcccceeEECCEEeeeccCCchhhhhhh
Q 017385 312 KACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPR 346 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v 346 (372)
+++++.||.|+||.++||+.+ .|..+.++|.+.+
T Consensus 120 ~~~~~~gi~gtPt~~v~g~~~-~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFIIGDTVI-PGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEECCEEe-cCCCCHHHHHHHh
Confidence 456778999999999999988 9999999998865
No 123
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.66 E-value=5.3e-05 Score=62.16 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=37.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh---hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea---~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~ 326 (372)
+.+|+|+|||+|+++.+.+.+-+ .+++..+....+. ..+..+.++++++.+||+..
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~---~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE---KAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC---HHHHHHHHHHhCCCCCcEEe
Confidence 67788999999999988776522 2335555443221 12255678888998899853
No 124
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.55 E-value=0.0014 Score=69.91 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=58.6
Q ss_pred hHHHHHHHhhhcCeeEEeccCCHHHHHHHH-HHhHHh----hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--
Q 017385 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 327 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WC~hC~~qk~-~fgkea----~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-- 327 (372)
.+..+|+|=.+-=+..|+|.||=.||+.|+ .|.+.. .+.+-..+-|-. +++.++.++-+++++-|-||.++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT--~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT--ANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec--CCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 344455553322245566999999999985 465421 222333344332 23345788889999999999888
Q ss_pred -CCEE--eeeccCCchhhhhhhccc
Q 017385 328 -NGQV--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 328 -~G~~--y~~G~rsl~~L~~~v~~~ 349 (372)
+|+. -..|..+.+.+.+.++..
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 3433 238888888888876643
No 125
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.47 E-value=0.00019 Score=75.91 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred hHHHHHHHh-hhcCeeEEeccCCHHHHHHHHHHhHHhhc--cCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEECC
Q 017385 255 FALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (372)
Q Consensus 255 ~~~~la~~L-~~~g~k~YgA~WC~hC~~qk~~fgkea~~--~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G 329 (372)
..++..+.| +...++.|..++||+|.+..+...+-+.. ++. .||.+. ..++..+|+|.+.|+.+|||
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~~ 537 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVDD 537 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEECC
Confidence 333444444 34469999999999999988777653322 232 444442 45888899999999999999
Q ss_pred EEeeeccCCchhhhhhh
Q 017385 330 QVFIVGSQWRARPVRPR 346 (372)
Q Consensus 330 ~~y~~G~rsl~~L~~~v 346 (372)
+....|..+.+++.+++
T Consensus 538 ~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 538 QQVYFGKKTIEEMLELI 554 (555)
T ss_pred EEEEeeCCCHHHHHHhh
Confidence 87449999999998764
No 126
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.42 E-value=0.00026 Score=56.39 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHH---hh--ccCc--eEEcCCCCC--------C---------CCcchHhhhhhcCCcccc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSE---AV--KQLN--YVECFPDGY--------R---------KGTKIAKACSDAKIEGFP 323 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgke---a~--~~l~--~VeC~~d~~--------~---------~~~k~~~lC~~~~I~gyP 323 (372)
+.+|+|+||++|++.-+.+.+- .. +++. +|.+|.+.. + ...+..++-+.++|+++|
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 5788899999999987655431 11 2333 445543300 0 001245677788999999
Q ss_pred eeEE
Q 017385 324 TWVI 327 (372)
Q Consensus 324 Tw~i 327 (372)
|.++
T Consensus 85 ~~~l 88 (95)
T PF13905_consen 85 TLVL 88 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9777
No 127
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.35 E-value=0.00018 Score=65.75 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=30.8
Q ss_pred hHhhhhhcCCcccceeEE-CCEEeeeccCCchhhhhh
Q 017385 310 IAKACSDAKIEGFPTWVI-NGQVFIVGSQWRARPVRP 345 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i-~G~~y~~G~rsl~~L~~~ 345 (372)
..++++++||+|.||+++ ||+.. .|..+.++|.++
T Consensus 161 ~~~l~~~~gi~gtPtii~~~G~~~-~G~~~~~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLADGRVV-PGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEEECCCeEe-cCCCCHHHHHhh
Confidence 457899999999999999 58888 999999999876
No 128
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.30 E-value=0.00066 Score=59.74 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHH-HhHHhh-ccC--ceE--EcCCCCCCCCcchHhhhhhcCCcccceeEE
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAV-KQL--NYV--ECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~-fgkea~-~~l--~~V--eC~~d~~~~~~k~~~lC~~~~I~gyPTw~i 327 (372)
.++.|+.-.+.=+.+|++.||++|+++++. |.++.. +.+ ++| +.+.|...++ . + ..+ +++||.++
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~--~-~---~~g-~~vPtivF 85 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN--L-S---PDG-QYVPRIMF 85 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC--c-C---ccC-cccCeEEE
Confidence 344444333333677889999999999865 544321 112 233 4444322111 1 1 234 79999888
No 129
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.27 E-value=0.00044 Score=78.69 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHhh-hcCeeEEeccCCHHHHHHHHHHhHHh---h-ccCceEEcCC---CCCCCC------------------cc
Q 017385 256 ALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEA---V-KQLNYVECFP---DGYRKG------------------TK 309 (372)
Q Consensus 256 ~~~la~~L~-~~g~k~YgA~WC~hC~~qk~~fgkea---~-~~l~~VeC~~---d~~~~~------------------~k 309 (372)
.+++.+.++ +.=+..|||.||++|++..|.+.+-. . +.+.+|.+.. |..... ..
T Consensus 411 ~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~ 490 (1057)
T PLN02919 411 PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDG 490 (1057)
T ss_pred cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECC
Confidence 344433343 22377889999999999888776521 1 1244555421 110000 01
Q ss_pred hHhhhhhcCCcccceeEE---CCEE--eeeccCCchhhhhhhccc
Q 017385 310 IAKACSDAKIEGFPTWVI---NGQV--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i---~G~~--y~~G~rsl~~L~~~v~~~ 349 (372)
..++.++++|+++||.++ +|+. ++.|....++|+++++..
T Consensus 491 ~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 491 DMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred chHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 235667899999999776 6765 348999989988887755
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.25 E-value=0.00051 Score=70.52 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=45.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHh---hhhh------cCCcccceeEECCEEeeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAK---ACSD------AKIEGFPTWVINGQVFIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~---lC~~------~~I~gyPTw~i~G~~y~~G~rs 338 (372)
+++|..+|||||++.|+.+.+. .++|.+.+.|+... ..+ ...+ .|-+..|+.+|||+.. .|-.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---gi~~~~idi~~~~~---~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~i-gGf~~ 76 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---DIPFTQISLDDDVK---RAEFYAEVNKNILLVEEHIRTVPQIFVGDVHI-GGYDN 76 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---CCCeEEEECCCChh---HHHHHHHHhhccccccCCCCccCeEEECCEEE-eCchH
Confidence 7899999999999999999974 46654443332111 112 1211 3788999999999866 77766
Q ss_pred chh
Q 017385 339 RAR 341 (372)
Q Consensus 339 l~~ 341 (372)
+.+
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 544
No 131
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0017 Score=55.04 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred HHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCC
Q 017385 259 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQW 338 (372)
Q Consensus 259 la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rs 338 (372)
.-+-+.+..+++|.-.|||.|++.|.+|.+ .......||-|.+.+.. .-|+.+-+--+-+.+|..+|+|+.. -|..+
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~-~~v~~~vvELD~~~~g~-eiq~~l~~~tg~~tvP~vFI~Gk~i-GG~~d 83 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSD-LGVNPKVVELDEDEDGS-EIQKALKKLTGQRTVPNVFIGGKFI-GGASD 83 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHh-CCCCCEEEEccCCCCcH-HHHHHHHHhcCCCCCCEEEECCEEE-cCHHH
Confidence 444566777999999999999999999998 34455678998764322 2244444446778999999999988 88777
Q ss_pred chhhh
Q 017385 339 RARPV 343 (372)
Q Consensus 339 l~~L~ 343 (372)
+.+|.
T Consensus 84 l~~lh 88 (104)
T KOG1752|consen 84 LMALH 88 (104)
T ss_pred HHHHH
Confidence 77665
No 132
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.12 E-value=0.0023 Score=58.59 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=47.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhh-ccCc--eEEcCCCC----------CC--CCcchHhhhhhcCCcccceeEE---CC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAV-KQLN--YVECFPDG----------YR--KGTKIAKACSDAKIEGFPTWVI---NG 329 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~-~~l~--~VeC~~d~----------~~--~~~k~~~lC~~~~I~gyPTw~i---~G 329 (372)
+.+|+|+|||+|+++.+.+.+-.. ...+ .|..+... .+ .-....++.+++++.+.|+-++ +|
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G 157 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDG 157 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCC
Confidence 667889999999999877765221 1222 33311000 00 0001236678899999998555 57
Q ss_pred EEeeecc-CCchhhhhhhcc
Q 017385 330 QVFIVGS-QWRARPVRPRQG 348 (372)
Q Consensus 330 ~~y~~G~-rsl~~L~~~v~~ 348 (372)
+....|. .+.++++++++.
T Consensus 158 ~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 158 KIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred eEEEccCCCCHHHHHHHHHH
Confidence 7633564 455666666553
No 133
>PTZ00062 glutaredoxin; Provisional
Probab=97.05 E-value=0.0016 Score=61.34 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=57.5
Q ss_pred hHHHHHHHhhhcCeeEEec-----cCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECC
Q 017385 255 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA-----~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G 329 (372)
....+.+.+++..+++|-- ||||+|++.|+.+.+. .++|.+.|.+.... -+..+=+..|-..+|..+|||
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---~i~y~~~DI~~d~~--~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS---GVKYETYNIFEDPD--LREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc---CCCEEEEEcCCCHH--HHHHHHHHhCCCCCCeEEECC
Confidence 4555666677777888833 6999999999999973 46665555432111 122333335778899999999
Q ss_pred EEeeeccCCchhhhh
Q 017385 330 QVFIVGSQWRARPVR 344 (372)
Q Consensus 330 ~~y~~G~rsl~~L~~ 344 (372)
+.. -|-..+.+|.+
T Consensus 177 ~~I-GG~d~l~~l~~ 190 (204)
T PTZ00062 177 ELI-GGHDIIKELYE 190 (204)
T ss_pred EEE-cChHHHHHHHH
Confidence 987 88777777654
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.05 E-value=0.00091 Score=69.98 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=65.7
Q ss_pred ChhHHHHHHHh-hhcCeeEEeccCCHHHHHHHHHHhHHhhc--cCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE
Q 017385 253 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (372)
Q Consensus 253 ~~~~~~la~~L-~~~g~k~YgA~WC~hC~~qk~~fgkea~~--~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i 327 (372)
++...+..+.| +...+++|..+.||||.+..+.+.+-+.. ++. .||.. ...++..+|+|.+.|+.++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~--------~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA--------LFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch--------hCHhHHHhcCCcccCEEEE
Confidence 34455555666 45679999999999999988888764432 232 33332 2468888999999999999
Q ss_pred CCEEeeeccCCchhhhhhhccc
Q 017385 328 NGQVFIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 328 ~G~~y~~G~rsl~~L~~~v~~~ 349 (372)
||+....|..+.+++.+.+..-
T Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 176 NGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcEEEecCCCHHHHHHHHhcc
Confidence 9977449999999998886653
No 135
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.03 E-value=0.001 Score=58.78 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHhHHhh-ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEE--eeeccCCchhhhhhhccccccccc
Q 017385 284 QMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV--FIVGSQWRARPVRPRQGIWLSRNE 355 (372)
Q Consensus 284 ~~fgkea~-~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl~~L~~~v~~~~~~~~~ 355 (372)
++..++.. .++..+++|.|. ..+++.+|||+++||+++ |||. .+.|.++.++|.++++++...+-+
T Consensus 59 eELa~e~~~~~v~~akVDiD~------~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQ------SEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred HHHHHHhcCCceEEEEEECCC------CHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 44444432 246666666554 358999999999999888 8876 449999999999999988776654
No 136
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.02 E-value=0.0017 Score=61.79 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=34.0
Q ss_pred hHhhhhhcCCcccceeEE-CCEEeeeccCCchhhhhhhcc
Q 017385 310 IAKACSDAKIEGFPTWVI-NGQVFIVGSQWRARPVRPRQG 348 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i-~G~~y~~G~rsl~~L~~~v~~ 348 (372)
+.+++++.||+|.||+++ ||+.. .|.++.++|+++++.
T Consensus 191 ~~~la~~lgi~gTPtiv~~~G~~~-~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 191 HYALGVQFGVQGTPAIVLSNGTLV-PGYQGPKEMKAFLDE 229 (232)
T ss_pred hHHHHHHcCCccccEEEEcCCeEe-eCCCCHHHHHHHHHH
Confidence 567899999999999999 88888 999999999998764
No 137
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.02 E-value=0.0012 Score=58.99 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=40.3
Q ss_pred eeEEeccCCHHHHHHHHHHhH-------H----hhccCceEEcCCCCCCCC-------------------cchHhhhhhc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGS-------E----AVKQLNYVECFPDGYRKG-------------------TKIAKACSDA 317 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgk-------e----a~~~l~~VeC~~d~~~~~-------------------~k~~~lC~~~ 317 (372)
+..|+|.|||.|++..|.+.+ + ..+++..|-.+.|..... ....++..++
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y 108 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQF 108 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHc
Confidence 677889999999999876643 1 011344444433321100 0123678889
Q ss_pred CCcccceeEE---CCEE
Q 017385 318 KIEGFPTWVI---NGQV 331 (372)
Q Consensus 318 ~I~gyPTw~i---~G~~ 331 (372)
+|.++||.++ +|+.
T Consensus 109 ~v~~iPt~vlId~~G~V 125 (146)
T cd03008 109 SVEELPTVVVLKPDGDV 125 (146)
T ss_pred CCCCCCEEEEECCCCcE
Confidence 9999999777 6766
No 138
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.95 E-value=0.0023 Score=49.45 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=42.4
Q ss_pred eEEeccCCHHHHHHHHHHhHH---hhccC--ceEEcCCCCCC---CC---------------c------chHhhhhhcCC
Q 017385 269 KMYGAFWCSHCLEQKQMFGSE---AVKQL--NYVECFPDGYR---KG---------------T------KIAKACSDAKI 319 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgke---a~~~l--~~VeC~~d~~~---~~---------------~------k~~~lC~~~~I 319 (372)
.+|+.|.||||++..+.+.+- ...++ .++.....+.+ .. . +..++.++.||
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 578899999999999887763 12333 34444333321 00 0 01245567899
Q ss_pred cccceeEECCEEeeec
Q 017385 320 EGFPTWVINGQVFIVG 335 (372)
Q Consensus 320 ~gyPTw~i~G~~y~~G 335 (372)
+|.||++++|+.| .|
T Consensus 82 ~g~Pt~v~~~~~~-~~ 96 (98)
T cd02972 82 TGTPTFVVNGEKY-SG 96 (98)
T ss_pred CCCCEEEECCEEc-CC
Confidence 9999999999776 44
No 139
>PRK10824 glutaredoxin-4; Provisional
Probab=96.93 E-value=0.0025 Score=54.95 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHHHHhhhcCeeEEec-----cCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 257 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 257 ~~la~~L~~~g~k~YgA-----~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
..+.+.+++..++.|-. ||||+|++.|+++.+. .....++|.+.|.. -+..+=+.-|-+.+|-.+|||+.
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~~----~~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNPD----IRAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCHH----HHHHHHHHhCCCCCCeEEECCEE
Confidence 34555566667888855 6999999999999863 34455677764321 12233333577788889999988
Q ss_pred eeeccCCchhhh
Q 017385 332 FIVGSQWRARPV 343 (372)
Q Consensus 332 y~~G~rsl~~L~ 343 (372)
. -|-.++.+|.
T Consensus 81 I-GG~ddl~~l~ 91 (115)
T PRK10824 81 V-GGCDIVIEMY 91 (115)
T ss_pred E-cChHHHHHHH
Confidence 7 7776666654
No 140
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.85 E-value=0.0026 Score=54.60 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred ChhHHHHHHHhhhcCeeEEecc-CCHHHHHHHHHHhHHh----hccCceEEcCCCCCCCC---------------cchHh
Q 017385 253 SPFALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAK 312 (372)
Q Consensus 253 ~~~~~~la~~L~~~g~k~YgA~-WC~hC~~qk~~fgkea----~~~l~~VeC~~d~~~~~---------------~k~~~ 312 (372)
+....+|++.-.+.-+.+|+|. |||+|+++.+.+.+-. .+.+.+|-+..+..... ....+
T Consensus 17 ~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 96 (146)
T PF08534_consen 17 DGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGA 96 (146)
T ss_dssp TSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSH
T ss_pred CCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHH
Confidence 3444555552233337788899 9999999987655421 12255544433211100 01235
Q ss_pred hhhhcCCc---------ccceeEE---CCEE--eeeccCC
Q 017385 313 ACSDAKIE---------GFPTWVI---NGQV--FIVGSQW 338 (372)
Q Consensus 313 lC~~~~I~---------gyPTw~i---~G~~--y~~G~rs 338 (372)
+.++++++ ++|++++ +|+. +..|..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 97 LAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 67789988 9999877 7876 2255555
No 141
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.79 E-value=0.0021 Score=49.49 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=36.4
Q ss_pred EeccCCHHHHHHHHHHhHHhhc---cCceEEcCCCCCCCCcchHhhhhhcC--CcccceeEE
Q 017385 271 YGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI 327 (372)
Q Consensus 271 YgA~WC~hC~~qk~~fgkea~~---~l~~VeC~~d~~~~~~k~~~lC~~~~--I~gyPTw~i 327 (372)
|+++|||+|++.++.+.+-+.+ .+.++.++.... ..+....++ +..+|+..+
T Consensus 39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~ 95 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLL 95 (127)
T ss_pred EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEE
Confidence 4599999999999887663322 356677765311 235566788 999999875
No 142
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.65 E-value=0.0029 Score=66.32 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=64.7
Q ss_pred hhHHHHHHHh-hhcCeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCC-CCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 254 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFP-DGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 254 ~~~~~la~~L-~~~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~-d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
+..++..+.| +...+++|..+-||||.+..+.+.+-+.. -+.|+.+. |+ ....++..+|+|.+.|+.++||+.
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~ 180 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-NPNISHTMIDG----ALFQDEVEALGIQGVPAVFLNGEE 180 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCceEEEEEc----hhCHHHHHhcCCcccCEEEECCcE
Confidence 4455555565 45579999999999999988888764432 22222221 21 125688889999999999999987
Q ss_pred eeeccCCchhhhhhhccc
Q 017385 332 FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 332 y~~G~rsl~~L~~~v~~~ 349 (372)
...|..+.+++.+.+...
T Consensus 181 ~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 181 FHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEecCCCHHHHHHHHhhc
Confidence 449999999997776544
No 143
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.61 E-value=0.00066 Score=65.15 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=53.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh------hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCE--EeeeccC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VFIVGSQ 337 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea------~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~--~y~~G~r 337 (372)
..+|+|||||.|+++++.+..=| ..++.+||.+.+ +-+--.+=+..-||..- +|+ +| +|.|
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n--------pgLsGRF~vtaLptIYHvkDGeFrry-sgaR 113 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN--------PGLSGRFLVTALPTIYHVKDGEFRRY-SGAR 113 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec--------cccceeeEEEecceEEEeeccccccc-cCcc
Confidence 66788999999999999876532 234568888752 24444688999999543 776 48 9999
Q ss_pred Cchhhhhhhc
Q 017385 338 WRARPVRPRQ 347 (372)
Q Consensus 338 sl~~L~~~v~ 347 (372)
+.+++..+++
T Consensus 114 dk~dfisf~~ 123 (248)
T KOG0913|consen 114 DKNDFISFEE 123 (248)
T ss_pred cchhHHHHHH
Confidence 9999987765
No 144
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.57 E-value=0.0061 Score=51.47 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=22.2
Q ss_pred HHHHHHhhhcCeeEEeccCCHHHHHHHHHHhH
Q 017385 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgk 288 (372)
++++++-.+.=+.+|+|.|||.|+++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 45555423334777889999999998766654
No 145
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.54 E-value=0.01 Score=55.98 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=53.7
Q ss_pred hhcCeeEEeccCCHHHHHHHHH---HhHHhhccCceEEcCCCCC-----CCCcchHhhhhhcCCcccceeEE---CC-EE
Q 017385 264 HAIGAKMYGAFWCSHCLEQKQM---FGSEAVKQLNYVECFPDGY-----RKGTKIAKACSDAKIEGFPTWVI---NG-QV 331 (372)
Q Consensus 264 ~~~g~k~YgA~WC~hC~~qk~~---fgkea~~~l~~VeC~~d~~-----~~~~k~~~lC~~~~I~gyPTw~i---~G-~~ 331 (372)
.+.|..||+...|++|+.|++. |.++..=.+-+|..| |. .+.....++.++.||+-+|+.++ ++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D--G~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD--GRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC--CCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 4457889999999999999965 555543234455554 31 00001246777899999999777 34 33
Q ss_pred --eeeccCCchhhhh
Q 017385 332 --FIVGSQWRARPVR 344 (372)
Q Consensus 332 --y~~G~rsl~~L~~ 344 (372)
.-.|..++++|.+
T Consensus 198 ~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 198 YPVSQGFMSLDELED 212 (215)
T ss_pred EEEeeecCCHHHHHH
Confidence 3379999999975
No 146
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.73 E-value=0.014 Score=54.12 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=22.5
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhH
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgk 288 (372)
.++|++.-.+.=+..|+|.|||.|++..+.+.+
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence 456665433333788999999999987655543
No 147
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.55 E-value=0.031 Score=48.90 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhH
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgk 288 (372)
.++|++.-.+.=+.+|+|.||| |.++-+.+.+
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHH
Confidence 3566665433336788999999 9998776654
No 148
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.54 E-value=0.025 Score=52.48 Aligned_cols=87 Identities=9% Similarity=-0.060 Sum_probs=54.5
Q ss_pred HHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhccCce--------EEcCCCCC-------------CCC--------cch
Q 017385 260 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--------VECFPDGY-------------RKG--------TKI 310 (372)
Q Consensus 260 a~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~~l~~--------VeC~~d~~-------------~~~--------~k~ 310 (372)
++-..+.-++-|+|.||+.|..-+|++.+-+.+.++. |+-+.+.. ..+ +++
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3333555688999999999999998876643334433 44332100 000 012
Q ss_pred HhhhhhcCCccccee--EE--CCEE--eeeccCCchhhhhhh
Q 017385 311 AKACSDAKIEGFPTW--VI--NGQV--FIVGSQWRARPVRPR 346 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw--~i--~G~~--y~~G~rsl~~L~~~v 346 (372)
..+..++++++.|+- +| +|+. .+.|..+.+++++++
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 245668999999664 55 5764 339999999887743
No 149
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.42 E-value=0.029 Score=50.34 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=46.9
Q ss_pred eeEEecc------CCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCC----cccceeEECCEEeeeccC
Q 017385 268 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVFIVGSQ 337 (372)
Q Consensus 268 ~k~YgA~------WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I----~gyPTw~i~G~~y~~G~r 337 (372)
+++|..+ +||+|++.|+.|.+. .++|-|.|.+.... -+.++-+..+- ...|..+|||+.. -|..
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---~V~~~e~DVs~~~~--~~~EL~~~~g~~~~~~tvPqVFI~G~~I-GG~d 75 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---RVKFDERDVSMDSG--FREELRELLGAELKAVSLPRVFVDGRYL-GGAE 75 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---CCcEEEEECCCCHH--HHHHHHHHhCCCCCCCCCCEEEECCEEE-ecHH
Confidence 6899999 999999999999863 46665555432111 12233222333 6899999999766 7776
Q ss_pred Cchhhh
Q 017385 338 WRARPV 343 (372)
Q Consensus 338 sl~~L~ 343 (372)
++.+|.
T Consensus 76 el~~L~ 81 (147)
T cd03031 76 EVLRLN 81 (147)
T ss_pred HHHHHH
Confidence 666653
No 150
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.35 E-value=0.051 Score=45.89 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=20.8
Q ss_pred HHHHHHhhhcCeeEEe-ccCCHHHHHHHHHHhH
Q 017385 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (372)
Q Consensus 257 ~~la~~L~~~g~k~Yg-A~WC~hC~~qk~~fgk 288 (372)
+++++.-.+.-+.+|+ +.|||.|.++-+.+.+
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~ 48 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRD 48 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHH
Confidence 4555443334466666 6999999988766544
No 151
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.17 E-value=0.061 Score=47.73 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=43.9
Q ss_pred HHHHHH-hhhcCeeEEeccCCHHHHHHHHHHhHHh--h--ccCceEEcCCCCCC-----CC------------------c
Q 017385 257 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYR-----KG------------------T 308 (372)
Q Consensus 257 ~~la~~-L~~~g~k~YgA~WC~hC~~qk~~fgkea--~--~~l~~VeC~~d~~~-----~~------------------~ 308 (372)
.+|... -.+.-+.+|+++|||+|.++.+.+.+-. . +++.+|-++.|... .. .
T Consensus 17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 445543 2233478888999999998876654421 1 24555544433210 00 0
Q ss_pred chHhhhhhcCCcccceeEE---CCEE
Q 017385 309 KIAKACSDAKIEGFPTWVI---NGQV 331 (372)
Q Consensus 309 k~~~lC~~~~I~gyPTw~i---~G~~ 331 (372)
...++.++++|.+.|+.++ +|+.
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v 122 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKL 122 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeE
Confidence 1235677899999998666 5665
No 152
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.85 E-value=0.019 Score=52.18 Aligned_cols=70 Identities=23% Similarity=0.475 Sum_probs=42.0
Q ss_pred Hhh-hcCeeEEeccCCHHHHHH----HHHHhHHh--hccCc--eEEcCCCCCC-----------------CCcchHhhhh
Q 017385 262 HLH-AIGAKMYGAFWCSHCLEQ----KQMFGSEA--VKQLN--YVECFPDGYR-----------------KGTKIAKACS 315 (372)
Q Consensus 262 ~L~-~~g~k~YgA~WC~hC~~q----k~~fgkea--~~~l~--~VeC~~d~~~-----------------~~~k~~~lC~ 315 (372)
+|. ++.+.+|+|.|||.|++. |+.|.+-. .+.+. +|.=|.++.. ...+..++++
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 443 445778999999999987 44554421 11232 2332222100 0123567899
Q ss_pred hcCCcccceeEE---CCEE
Q 017385 316 DAKIEGFPTWVI---NGQV 331 (372)
Q Consensus 316 ~~~I~gyPTw~i---~G~~ 331 (372)
+|+|.+.|+.++ +|+.
T Consensus 110 ky~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTV 128 (157)
T ss_pred hcccCcCceeEEecCCCCE
Confidence 999999999888 5643
No 153
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.73 E-value=0.065 Score=51.54 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=23.8
Q ss_pred hHHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhH
Q 017385 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgk 288 (372)
..++|++.-.+.=+..|+|.|||.|.++.+.+.+
T Consensus 90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 3556776544444778889999999987655543
No 154
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.59 E-value=0.023 Score=49.03 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=31.4
Q ss_pred HhhhhhcCCcccceeEECCEEeeeccCCchhhhhhhc
Q 017385 311 AKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQ 347 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~ 347 (372)
.+.++++||+|.||.+|||+.+ .|..++++|.++++
T Consensus 126 ~~~~~~~~i~~tPt~~inG~~~-~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFINGKYV-VGPYTIEELKELID 161 (162)
T ss_dssp HHHHHHHT-SSSSEEEETTCEE-ETTTSHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEECCEEe-CCCCCHHHHHHHHc
Confidence 3567889999999999999998 99999999998865
No 155
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.57 E-value=0.11 Score=39.45 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=39.7
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEEC-CEE
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 331 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~-G~~ 331 (372)
++|+.+|||+|.+.+-.+.+ .......++.+... + ..++-+.+.-...|+++.+ |+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~-~gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL-AGITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH-cCCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcE
Confidence 58999999999999987765 23345567776532 2 2344344677899999985 654
No 156
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.54 E-value=0.099 Score=47.86 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=41.1
Q ss_pred ChhHHHHHHHhhhcCeeEEeccCCHHHHHHH-HHHhHHh-hccCc--e--EEcCCCCCCCCcchHhhhhhc--------C
Q 017385 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QMFGSEA-VKQLN--Y--VECFPDGYRKGTKIAKACSDA--------K 318 (372)
Q Consensus 253 ~~~~~~la~~L~~~g~k~YgA~WC~hC~~qk-~~fgkea-~~~l~--~--VeC~~d~~~~~~k~~~lC~~~--------~ 318 (372)
++...+.||.-.+.=....|+.||..|+.++ +.|.+.. ++.|+ + |.+|.+. .+++-..| |
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 4567778877776667788899999999998 4676532 33343 3 5556543 23444444 7
Q ss_pred CcccceeEE---CCEE
Q 017385 319 IEGFPTWVI---NGQV 331 (372)
Q Consensus 319 I~gyPTw~i---~G~~ 331 (372)
..|+|+-++ +|+.
T Consensus 100 ~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKP 115 (163)
T ss_dssp ---SSEEEEE-TTS-E
T ss_pred CCCCCceEEECCCCCe
Confidence 899999666 5655
No 157
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.24 E-value=0.13 Score=45.06 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHH
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQM 285 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~ 285 (372)
.++|++.-.+.=+.+|+|+|||.|++.-+.
T Consensus 14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~ 43 (153)
T TIGR02540 14 TVSLEKYRGKVSLVVNVASECGFTDQNYRA 43 (153)
T ss_pred EecHHHhCCCEEEEEEeCCCCCchhhhHHH
Confidence 355666543333678999999999886653
No 158
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.21 E-value=0.031 Score=46.07 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhcCeeEEecc-CCHHHHHHHHHHhH
Q 017385 255 FALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 288 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~-WC~hC~~qk~~fgk 288 (372)
...+|++.-.+.-+.+|++. |||+|+++-+.+.+
T Consensus 16 ~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 16 KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred CEEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 34556555333446677788 99999988766554
No 159
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=94.15 E-value=0.14 Score=43.91 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=56.2
Q ss_pred hHHHHHHHhhhcCeeEEecc----CCHHHHHH--HHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE-
Q 017385 255 FALSLAKHLHAIGAKMYGAF----WCSHCLEQ--KQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~----WC~hC~~q--k~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i- 327 (372)
.+++.||+=.+.-++++.++ ||..|++. .|++.+---++.-.+.+|.+... -.+++...++++||++.+
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e----g~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE----GYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH----HHHHHHHhCCCCCCEEEEE
Confidence 34555555444446666799 99999543 12222211112224566654321 357889999999999777
Q ss_pred ---CCE--E--eeeccCCchhhhhhhccc
Q 017385 328 ---NGQ--V--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 328 ---~G~--~--y~~G~rsl~~L~~~v~~~ 349 (372)
+++ . +++|..+.++|.+.++.+
T Consensus 84 ~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 84 MLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 332 1 459999999999876654
No 160
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.087 Score=48.31 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred eeEEeccCCHHHHHHHHH-HhHH----hhc-cCceEEcCCCC-----CCCCcc-----hHhhhhhcCCcccceeEE---C
Q 017385 268 AKMYGAFWCSHCLEQKQM-FGSE----AVK-QLNYVECFPDG-----YRKGTK-----IAKACSDAKIEGFPTWVI---N 328 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~-fgke----a~~-~l~~VeC~~d~-----~~~~~k-----~~~lC~~~~I~gyPTw~i---~ 328 (372)
..||+.+-|+.|.++|.. |.++ +.. ....|+.+-.+ .+.|++ ..++++.++++++||.++ +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 789999999999999843 3332 211 12223222111 112222 358999999999999888 4
Q ss_pred CEE--eeeccCCchhhhh
Q 017385 329 GQV--FIVGSQWRARPVR 344 (372)
Q Consensus 329 G~~--y~~G~rsl~~L~~ 344 (372)
|+. +++|=.+.|+...
T Consensus 126 Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 126 GKTILELPGYMPPEQFLA 143 (182)
T ss_pred CCEEEecCCCCCHHHHHH
Confidence 554 5588888877653
No 161
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.77 E-value=0.11 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh----hccCceEEcCCCCCCCCcchHhhhhhcCCcccce
Q 017385 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (372)
Q Consensus 257 ~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea----~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPT 324 (372)
+.+.+...... +.||.++|||.|+++.+.+.+-. .+.+..|-+..|... +..+..+++++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 44555443222 55567999999999987765421 134556666554321 13345666666 4774
No 162
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.19 E-value=0.36 Score=34.44 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=39.9
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEe
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVF 332 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y 332 (372)
++|+.++||+|.+.+..+.. .......++++.+.... .++=+..+-..+|++..+|+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~-~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEE-KGLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHH-cCCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEE
Confidence 68999999999999988775 33344567776543211 1222235677889999998764
No 163
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.15 E-value=0.45 Score=46.47 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=52.6
Q ss_pred hhcCeeEEeccCCHHHHHHHHH---HhHHhhccCceEEcCCCCCC-C----CcchHhhhhhcCCcccceeEE---C-CEE
Q 017385 264 HAIGAKMYGAFWCSHCLEQKQM---FGSEAVKQLNYVECFPDGYR-K----GTKIAKACSDAKIEGFPTWVI---N-GQV 331 (372)
Q Consensus 264 ~~~g~k~YgA~WC~hC~~qk~~---fgkea~~~l~~VeC~~d~~~-~----~~k~~~lC~~~~I~gyPTw~i---~-G~~ 331 (372)
++-|..||+..-||+|+++.+. |.++.. +..+-.+.||.. . ......+.++.||+-+|+.++ + ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4568899999999999999965 555433 444444434421 0 001234677899999999887 3 332
Q ss_pred --eeeccCCchhhhh
Q 017385 332 --FIVGSQWRARPVR 344 (372)
Q Consensus 332 --y~~G~rsl~~L~~ 344 (372)
.-.|..+.++|.+
T Consensus 228 ~pv~~G~iS~deL~~ 242 (256)
T TIGR02739 228 SPLAYGFISQDELKE 242 (256)
T ss_pred EEEeeccCCHHHHHH
Confidence 3379999999975
No 164
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=93.07 E-value=0.086 Score=46.93 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=30.6
Q ss_pred HhhhhhcCCcccceeEECCEEeeeccCCchhhhhhh
Q 017385 311 AKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPR 346 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v 346 (372)
.+...+.||.|.||+++||+.+ .|...++.|++.+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~-~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMF-WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeee-cccccHHHHHHHh
Confidence 3456789999999999999988 9999999998764
No 165
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.98 E-value=0.083 Score=46.96 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.5
Q ss_pred HhhhhhcCCcccceeEECCE-EeeeccCCchhhhhhhc
Q 017385 311 AKACSDAKIEGFPTWVINGQ-VFIVGSQWRARPVRPRQ 347 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i~G~-~y~~G~rsl~~L~~~v~ 347 (372)
.+...++||.|.||+++||+ .. .|.+++++|++.++
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~-~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRF-FGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEE-ESCSSHHHHHHHH-
T ss_pred HHHHHHcCCcccCEEEECCEEEE-ECCCCHHHHHHHhC
Confidence 35567899999999999999 56 99999999998653
No 166
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=92.95 E-value=0.5 Score=42.04 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhh-cC-CCCCCCCCcccccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 017385 68 GIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (372)
Q Consensus 68 ~La~iGll~S~YLt~~k~-~~-~~~~C~i~~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~ 133 (372)
.+++.|+.++.|-.+... +. ..+.|. .++|.++- | .++|++.|.+-+++|.+++++.+..
T Consensus 70 ~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~~---~-~fl~lsiP~wSl~aF~~i~~l~~~~ 131 (135)
T PRK00611 70 PLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTKL---F-LFGFITMPMASAAAFCAIACLLVLA 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCcccc---h-hcccccHHHHHHHHHHHHHHHHHHH
Confidence 558899999999987765 33 245786 35899983 5 7899999999999999887776553
No 167
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=92.45 E-value=0.12 Score=44.13 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCeeEEeccC-CHHHHHHHHHHhHHh--hccCceEEcCCC
Q 017385 256 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSEA--VKQLNYVECFPD 302 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~W-C~hC~~qk~~fgkea--~~~l~~VeC~~d 302 (372)
.++|++.-.+.-+.+|++.| ||+|+++.+.+.+.. .+.+..|-.+.|
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d 67 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISAD 67 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 45666644444577778877 799999998876532 224444444443
No 168
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=92.40 E-value=0.35 Score=43.22 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=21.4
Q ss_pred HHHHHHHhhhcCeeEEe-ccCCHHHHHHHHHHhH
Q 017385 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (372)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WC~hC~~qk~~fgk 288 (372)
..+|.+...+.-+.+|+ +.|||+|..+-+.+.+
T Consensus 21 ~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 21 EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 45565543333455565 8999999998766544
No 169
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.07 E-value=0.79 Score=44.59 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=53.2
Q ss_pred hhcCeeEEeccCCHHHHHHHHH---HhHHhhccCceEEcCCCCCCC-----CcchHhhhhhcCCcccceeEE---C-CEE
Q 017385 264 HAIGAKMYGAFWCSHCLEQKQM---FGSEAVKQLNYVECFPDGYRK-----GTKIAKACSDAKIEGFPTWVI---N-GQV 331 (372)
Q Consensus 264 ~~~g~k~YgA~WC~hC~~qk~~---fgkea~~~l~~VeC~~d~~~~-----~~k~~~lC~~~~I~gyPTw~i---~-G~~ 331 (372)
++-|..||+-.-||+|++|.+. |.++. .+..+-.+.||... ........++.||+-+|+.++ + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4468999999999999999975 55442 35555554444211 011223456899999999877 3 333
Q ss_pred --eeeccCCchhhhhh
Q 017385 332 --FIVGSQWRARPVRP 345 (372)
Q Consensus 332 --y~~G~rsl~~L~~~ 345 (372)
.-.|..+.++|.+=
T Consensus 221 ~pv~~G~iS~deL~~R 236 (248)
T PRK13703 221 RPLSYGFITQDDLAKR 236 (248)
T ss_pred EEEeeccCCHHHHHHH
Confidence 33699999999753
No 170
>PRK13190 putative peroxiredoxin; Provisional
Probab=91.86 E-value=0.25 Score=45.87 Aligned_cols=98 Identities=12% Similarity=-0.010 Sum_probs=55.6
Q ss_pred HHHHHHHhhhcCee-EEeccCCHHHHHHHHHHhHHh--h--ccCce--EEcCCCCC----------CCC---------cc
Q 017385 256 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGY----------RKG---------TK 309 (372)
Q Consensus 256 ~~~la~~L~~~g~k-~YgA~WC~hC~~qk~~fgkea--~--~~l~~--VeC~~d~~----------~~~---------~k 309 (372)
.++|.+.-.+.-+. +|.|.|||.|..+-+.|.+.+ . ..+.. |.+|.... +.+ +.
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 45676653322233 689999999998865554311 1 11222 22221000 000 01
Q ss_pred hHhhhhhcCCc------ccceeEE---CCEEe--e----eccCCchhhhhhhccccccc
Q 017385 310 IAKACSDAKIE------GFPTWVI---NGQVF--I----VGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 310 ~~~lC~~~~I~------gyPTw~i---~G~~y--~----~G~rsl~~L~~~v~~~~~~~ 353 (372)
..++++++|+. ++|+-+| +|+.+ . .+.|+.+|+.+.++.+...+
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~ 157 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNW 157 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 24778889984 5898555 56551 1 45689999999888776543
No 171
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.84 E-value=0.59 Score=45.07 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=29.1
Q ss_pred HhhhhhcCCcccceeEE-C--CEE-eeeccCCchhhhhhhc
Q 017385 311 AKACSDAKIEGFPTWVI-N--GQV-FIVGSQWRARPVRPRQ 347 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i-~--G~~-y~~G~rsl~~L~~~v~ 347 (372)
.++.++.||+|.||+++ | |+. ...|..+.++|++.+.
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 34667799999999988 4 652 3389999999998764
No 172
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=91.61 E-value=0.13 Score=44.98 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=39.8
Q ss_pred hhHHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhc--c--CceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--
Q 017385 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 327 (372)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~--~--l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-- 327 (372)
+....++..-+...+.-+..+|||-|.+.=|.|.|=+.. . +.++--|. |. +.-+.-...|.+..||.++
T Consensus 31 ~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~--el~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 31 EQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NK--ELMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp HHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HH--HHTTTTTT-SS--SSEEEEE-
T ss_pred HHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---Ch--hHHHHHHhCCCeecCEEEEEc
Confidence 344445555555668888899999999999999883311 2 33443331 11 1111122279999999888
Q ss_pred -CCEE-eeeccCCch
Q 017385 328 -NGQV-FIVGSQWRA 340 (372)
Q Consensus 328 -~G~~-y~~G~rsl~ 340 (372)
+|+. -.=|+|+..
T Consensus 106 ~~~~~lg~wgerP~~ 120 (129)
T PF14595_consen 106 KDGKELGRWGERPKE 120 (129)
T ss_dssp TT--EEEEEESS-HH
T ss_pred CCCCEeEEEcCCCHH
Confidence 3444 125666644
No 173
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.54 E-value=0.48 Score=35.32 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=38.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE-CCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-~G~~ 331 (372)
.++|+.++||+|++.+-.+... .-....++++..+.. .+..+.-+...-...|++++ +|+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~--~~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGE--QRSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCc--cCCHHHHhhCCCCCCCEEEeCCCCE
Confidence 3789999999999999887752 233445777642211 11233334456678899988 4443
No 174
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=91.45 E-value=0.19 Score=45.07 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcCeeEEeccC-CHHHHHHHHHHhHHhh--ccCceEEcCCCCCCCCcchHhhhhhcCCcccc
Q 017385 256 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 323 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~W-C~hC~~qk~~fgkea~--~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyP 323 (372)
.++|++.-.+.-+..|+|.| ||.|+++.+.|.+.+. +.+..|-...|... ++.+..+++++..||
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~---~~~~f~~~~~~~~~~ 103 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPF---AQKRFCGAEGLENVI 103 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHH---HHHHHHHhCCCCCce
Confidence 45666643333477788998 9999999888776322 23444444433211 234455566665433
No 175
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=91.44 E-value=0.62 Score=35.13 Aligned_cols=61 Identities=18% Similarity=-0.012 Sum_probs=40.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
.++|+.++||+|++.+-.... .......++++... +..+.++.-+...-...|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~-~gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKA-LGLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHH-cCCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 378999999999998877764 23345567776422 11123455555667789999888754
No 176
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.21 E-value=0.85 Score=34.20 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=38.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
++.|+.++||.|++.+-.+.+. .-....++.+.+. + ..+.-+...-...|+++.+|+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~~--~---~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPDN--P---PEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCCC--C---CHHHHhhCCCCCCCEEEECCEE
Confidence 3689999999999999887652 2233445555432 2 2344444667789999877754
No 177
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.09 E-value=0.3 Score=41.08 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=32.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-|||+.|++.++.+.+ ..-...++|...+.. ...+..++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~-~~i~~~~~di~~~p~-s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-RGVAYTFHDYRKDGL-DAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-cCCCeEEEecccCCC-CHHHHHHHHHHhC
Confidence 479999999999999999986 333344455543322 2233566777666
No 178
>PLN02412 probable glutathione peroxidase
Probab=91.06 E-value=0.27 Score=44.13 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=20.6
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHh
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFG 287 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fg 287 (372)
.++|+..-.+.=+.+|+|+|||.|+++.+.+.
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~ 52 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELN 52 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHH
Confidence 45566542222356688999999997655443
No 179
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=90.58 E-value=1.3 Score=39.57 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh-c---CCCCCCCCCcccccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 017385 66 CAGIGGVGFLETTYLSYLKL-T---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (372)
Q Consensus 66 i~~La~iGll~S~YLt~~k~-~---~~~~~C~i~~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~ 133 (372)
.+.+++.|+.+++|-.+.+. + +..+.|. ..+|+++.-.+ +.|++++.+-+++|.+++++.+..
T Consensus 69 ~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~~ 135 (139)
T PRK03113 69 SLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFIV 135 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999887764 3 2235776 34899865443 456999999999999988776653
No 180
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.38 E-value=0.37 Score=39.76 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=30.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-++|+.|++.++.+.+ ..-...++|...+.. ..++..++..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-~~i~~~~idi~~~~~-~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE-HGIEYEFIDYLKEPP-TKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH-cCCCcEEEeeccCCC-CHHHHHHHHHhcC
Confidence 478999999999999999986 333344555543322 2122444444444
No 181
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.25 E-value=0.3 Score=43.96 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred HhhhhhcCCcccceeEECCEEeeeccCCchhhhhhh
Q 017385 311 AKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPR 346 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v 346 (372)
.+...+.||.|.||.++||+....|.++.+++.+.+
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 456678999999999999886559999999998764
No 182
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=90.16 E-value=0.45 Score=40.60 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=22.3
Q ss_pred hHHHHHHHhh-hcCeeEE-eccCCHHHHHHHHHHhH
Q 017385 255 FALSLAKHLH-AIGAKMY-GAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 255 ~~~~la~~L~-~~g~k~Y-gA~WC~hC~~qk~~fgk 288 (372)
..+++.+... +.-+.+| .+.||+.|.++.+.+.+
T Consensus 18 ~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 3567766544 3334444 49999999988766654
No 183
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=89.80 E-value=0.2 Score=43.57 Aligned_cols=53 Identities=21% Similarity=0.472 Sum_probs=26.7
Q ss_pred eccCCHHHHHHHHHHhHH---hhccCceEEcCCCC---CCCCcchHhhhh---hcCCcccceeEE
Q 017385 272 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPDG---YRKGTKIAKACS---DAKIEGFPTWVI 327 (372)
Q Consensus 272 gA~WC~hC~~qk~~fgke---a~~~l~~VeC~~d~---~~~~~k~~~lC~---~~~I~gyPTw~i 327 (372)
|-+|||.|.+-+|...+. +.+...+|.|.... +++ ....-+ +.+|++.||++.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkd---p~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKD---PNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC----TTSHHHH--CC---SSSEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCC---CCCCceEcceeeeeecceEEE
Confidence 347999999998765441 22344466664311 111 011122 389999999776
No 184
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=89.77 E-value=0.51 Score=39.77 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECF 300 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~ 300 (372)
+++|+-++||.|++.++.+.+. .++|.+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~---~i~~~~id 30 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH---GVDYTAID 30 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc---CCceEEec
Confidence 4789999999999999999873 45554444
No 185
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.60 E-value=1.2 Score=33.65 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=35.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEEC-CEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~-G~~ 331 (372)
++.|+.++||+|++.+..+... .-....++.+.+. . ...+ +..+=...|+.+.+ |+.
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~---~~~~-~~~~~~~vP~L~~~~~~~ 58 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E---ATPI-RMIGAKQVPILEKDDGSF 58 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h---HHHH-HhcCCCccCEEEeCCCeE
Confidence 3679999999999999888752 2233445555432 1 1111 22344578999886 544
No 186
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=89.46 E-value=0.75 Score=42.52 Aligned_cols=99 Identities=7% Similarity=-0.053 Sum_probs=53.3
Q ss_pred hHHHHHHHhhhcCeeEEe-ccCCHHHHHHHHHHhHHhh----ccCceEEcCCCCCCC------------C-------cch
Q 017385 255 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRK------------G-------TKI 310 (372)
Q Consensus 255 ~~~~la~~L~~~g~k~Yg-A~WC~hC~~qk~~fgkea~----~~l~~VeC~~d~~~~------------~-------~k~ 310 (372)
..++|++...+.-+.+|+ +.|||.|.++-+.|.+... ..+..+=++.|.... + +..
T Consensus 22 ~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 22 IEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred eEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 344555443333355656 9999999998765544210 111122111111000 0 013
Q ss_pred HhhhhhcCC----ccc--ceeE-E--CCEE-----e-eeccCCchhhhhhhccccccc
Q 017385 311 AKACSDAKI----EGF--PTWV-I--NGQV-----F-IVGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 311 ~~lC~~~~I----~gy--PTw~-i--~G~~-----y-~~G~rsl~~L~~~v~~~~~~~ 353 (372)
.+++++||+ .|. |+-+ | +|+. + ....|+.+++.+.++.+...+
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~ 159 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVA 159 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHh
Confidence 478899999 467 8744 4 5654 1 133478888888877665533
No 187
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.14 E-value=0.8 Score=42.39 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=53.9
Q ss_pred HHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh--h--ccCc--eEEcCCCCCC------------CC-------cc
Q 017385 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLN--YVECFPDGYR------------KG-------TK 309 (372)
Q Consensus 257 ~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea--~--~~l~--~VeC~~d~~~------------~~-------~k 309 (372)
++|++...+.- +.+|.|.|||.|..+-+.|.+.+ . ..+. -|.+|..... .+ +.
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~ 96 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADP 96 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECc
Confidence 56665433222 33799999999999876554421 1 1222 3333321000 00 01
Q ss_pred hHhhhhhcCCc----ccc-----eeEE--CCEEe--eec----cCCchhhhhhhccccccc
Q 017385 310 IAKACSDAKIE----GFP-----TWVI--NGQVF--IVG----SQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 310 ~~~lC~~~~I~----gyP-----Tw~i--~G~~y--~~G----~rsl~~L~~~v~~~~~~~ 353 (372)
..++++++|+. +.| |.+| +|+.+ ..| .|+.+++.+.++.+...+
T Consensus 97 ~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~ 157 (203)
T cd03016 97 DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTD 157 (203)
T ss_pred hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHh
Confidence 24778899986 455 4666 46541 123 578889988887765544
No 188
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.47 E-value=2.4 Score=32.59 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=41.9
Q ss_pred EEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEe
Q 017385 270 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVF 332 (372)
Q Consensus 270 ~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y 332 (372)
.|+.++||+|++..-.++. ..-...++++++... ..++-....-.-.|+.+.+|+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-~~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-KGIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-HTEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEE
T ss_pred CCCcCCChHHHHHHHHHHH-cCCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEE
Confidence 4899999999999877765 333455677775432 34666677888999999888765
No 189
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.03 E-value=0.84 Score=38.64 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=36.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE-CCEEe
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVF 332 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-~G~~y 332 (372)
+++|+-++||+|++.++.+.+. .-...+++...+.. ..++..++.+..|. |+=.++- +|+.|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~-~~~el~~l~~~~~~-~~~~lin~~~~~~ 63 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGP-TREELLDILSLLED-GIDPLLNTRGQSY 63 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChh-hHHHHHHHHHHcCC-CHHHheeCCCcch
Confidence 4689999999999999999863 33344555543321 11224445555553 2222322 56665
No 190
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.02 E-value=2.1 Score=33.87 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=50.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh-hc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECC------EEeeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA-VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING------QVFIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea-~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G------~~y~~G~rs 338 (372)
+.+|+-+-|+-|.+.++...+-. .. .+..||.+.| .++-.+|+. ..|-..++| +....+.-+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 57999999999999999888621 12 2556777632 356668995 799999988 554478888
Q ss_pred chhhhhhh
Q 017385 339 RARPVRPR 346 (372)
Q Consensus 339 l~~L~~~v 346 (372)
.++|.+++
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888775
No 191
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=86.91 E-value=2.7 Score=33.58 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=39.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEEC-CEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~-G~~ 331 (372)
++.|+.+.||+|++.+-.+.. ..-....++.+.+. . ..++-+...-...|+++++ |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~-~gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAA-KNIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHH-cCCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence 889999999999999977765 23334556666432 1 2234445667789999997 554
No 192
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.20 E-value=1.2 Score=38.84 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=30.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-+||+.|++.+..+.+. .-....++...+.. ...+..++++..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~~~-~~~eL~~~l~~~~ 50 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSSPL-TIDEIKQILRMTE 50 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCChh-hHHHHHHHHHHhc
Confidence 6799999999999999999763 22333455443321 1122444555543
No 193
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.05 E-value=0.78 Score=40.16 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=23.5
Q ss_pred HhhhhhcCCcccceeEECCEEeeeccCCch
Q 017385 311 AKACSDAKIEGFPTWVINGQVFIVGSQWRA 340 (372)
Q Consensus 311 ~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~ 340 (372)
.+.+.+.||.|.||.+|||+.. .+.++++
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~-~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYV-VNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEE-EChhhcc
Confidence 3567889999999999999987 6666554
No 194
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.21 E-value=3.8 Score=30.40 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=37.9
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
++|+-+.||+|++.+-.+.. ..-..+.++.+... ...+..+.-+...-...|+++.+|+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~-~~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLAL-LGIPYEWVEVDILK--GETRTPEFLALNPNGEVPVLELDGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHH-cCCCcEEEEecCCC--cccCCHHHHHhCCCCCCCEEEECCEE
Confidence 68989999999999877764 23334456665321 11112343334556678999988765
No 195
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=83.76 E-value=3.4 Score=31.50 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=35.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCce--EEcCCCCCCCCcchHhhhhhcCCcccceeEEC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~--VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~ 328 (372)
+++|+.+.||.|++.+..+.. +.++| ++.++. . ..++ +..+-...|+.+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~---~gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY---HGIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH---CCCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 678999999999999987765 24544 444432 1 1232 34667789999887
No 196
>PRK13189 peroxiredoxin; Provisional
Probab=83.70 E-value=1.6 Score=41.29 Aligned_cols=95 Identities=8% Similarity=-0.016 Sum_probs=52.7
Q ss_pred HHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh--h--ccCce--EEcCCCCCC----C------C---------cc
Q 017385 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGYR----K------G---------TK 309 (372)
Q Consensus 257 ~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea--~--~~l~~--VeC~~d~~~----~------~---------~k 309 (372)
+.+.+.++..- ..+|.|.|||.|..+-+.|.+.+ . ..+.. |.+|..... + + +.
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~ 106 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADD 106 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcC
Confidence 56666654432 34789999999998755444311 1 11222 333311000 0 0 01
Q ss_pred hHhhhhhcCCc-------ccceeEE---CCEE---e---eeccCCchhhhhhhccccc
Q 017385 310 IAKACSDAKIE-------GFPTWVI---NGQV---F---IVGSQWRARPVRPRQGIWL 351 (372)
Q Consensus 310 ~~~lC~~~~I~-------gyPTw~i---~G~~---y---~~G~rsl~~L~~~v~~~~~ 351 (372)
..++++++|+. ..|+.+| +|+. . ....|+.+++.+.++.+..
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 164 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQT 164 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 24678888875 4676555 5654 1 1367888999888876644
No 197
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=0.98 Score=42.26 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=32.9
Q ss_pred hHhhhhhcCCcccceeEECCEEeeeccCCchhhhhhhcc
Q 017385 310 IAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQG 348 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~~ 348 (372)
..++.++.||+|.||.++||+.+ .|..++++|.+.+..
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~-~g~~~~~~l~~~i~~ 241 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLV-PGLPDLDELKAIIDE 241 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeee-cCCCCHHHHHHHHHH
Confidence 34567789999999999999988 999999999987654
No 198
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=83.40 E-value=1.6 Score=36.82 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=30.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-++|+.|++.++.|.+. .....+++...+.. ..++..++.++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~~~-~~~el~~~~~~~~ 50 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQPL-TKEELKEILSLTE 50 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCCcc-hHHHHHHHHHHhc
Confidence 6799999999999999999863 33444555543321 1122444555443
No 199
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=82.99 E-value=1.8 Score=39.77 Aligned_cols=95 Identities=8% Similarity=0.001 Sum_probs=53.0
Q ss_pred HHHHHHHhhhcCeeEEe-ccCCHHHHHHHHHHhHHh----hccCce--EEcCCCCCC-----C--------C-------c
Q 017385 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA----VKQLNY--VECFPDGYR-----K--------G-------T 308 (372)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WC~hC~~qk~~fgkea----~~~l~~--VeC~~d~~~-----~--------~-------~ 308 (372)
.++|.+...+..+.+|+ +.||++|......|.+.+ ...+.. |.+|..... . + .
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 46777765555666777 488999998775554421 112333 333322100 0 0 0
Q ss_pred chHhhhhhcCCc------ccceeEE---CCEEe------eeccCCchhhhhhhcccc
Q 017385 309 KIAKACSDAKIE------GFPTWVI---NGQVF------IVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 309 k~~~lC~~~~I~------gyPTw~i---~G~~y------~~G~rsl~~L~~~v~~~~ 350 (372)
+..++++.+|+. .||+.+| +|+.+ ..-.|+++++.+.+....
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 134688889985 4788665 46531 123467777777665544
No 200
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=82.95 E-value=1.6 Score=37.88 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=32.7
Q ss_pred HHHHHHHhhhcCeeEEec-cCCHHHHHHHHHHhHHh----hccCceEEcCCCCCCCCcchHhhhhhcCC
Q 017385 256 ALSLAKHLHAIGAKMYGA-FWCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA-~WC~hC~~qk~~fgkea----~~~l~~VeC~~d~~~~~~k~~~lC~~~~I 319 (372)
.++|+..-.+.-+.+|++ .|||+|..+.+.+.+.. .+.+..|-+..|.. .+..+.++++++
T Consensus 22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~---~~~~~~~~~~~~ 87 (154)
T PRK09437 22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP---EKLSRFAEKELL 87 (154)
T ss_pred EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHhCC
Confidence 456666433334556655 68999988765554321 12355555555432 124455555554
No 201
>PTZ00256 glutathione peroxidase; Provisional
Probab=81.85 E-value=1 Score=40.89 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhH
Q 017385 255 FALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 255 ~~~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgk 288 (372)
..++|++. +... +.+|+|.|||.|++..+.+.+
T Consensus 31 ~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 31 QLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred CEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 34566554 3322 246789999999987766553
No 202
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=81.77 E-value=3.6 Score=31.77 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCce--EEcCCCCCCCCcchHhhhhhcCCcccceeEEC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~--VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~ 328 (372)
+++|+.++||+|.+.+....+. .++| ++++++. . +..+.=+...-...|+.+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence 5789999999999999877652 4554 5554321 1 12333334566789999873
No 203
>PRK15000 peroxidase; Provisional
Probab=81.53 E-value=2.2 Score=39.61 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=53.3
Q ss_pred HHHHHHHhhhc-CeeEEec-cCCHHHHHHHHHHhHHh--h--ccCceEEcCCCCCCC------------C----------
Q 017385 256 ALSLAKHLHAI-GAKMYGA-FWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRK------------G---------- 307 (372)
Q Consensus 256 ~~~la~~L~~~-g~k~YgA-~WC~hC~~qk~~fgkea--~--~~l~~VeC~~d~~~~------------~---------- 307 (372)
..+|.+.++.. -+.+|++ .||+.|..+-+.|.+-+ . ..+..+-+..|.... +
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 34555543332 3566667 59999999876554421 1 112222222221000 0
Q ss_pred cchHhhhhhcCCc------ccceeEE---CCEE---e---eeccCCchhhhhhhcccccc
Q 017385 308 TKIAKACSDAKIE------GFPTWVI---NGQV---F---IVGSQWRARPVRPRQGIWLS 352 (372)
Q Consensus 308 ~k~~~lC~~~~I~------gyPTw~i---~G~~---y---~~G~rsl~~L~~~v~~~~~~ 352 (372)
+...++++++|+. ++|+-++ +|+. + ..-.|+.+|+.+.++.++..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~ 164 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFH 164 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhH
Confidence 1123678889998 7898555 5654 1 12347888888888766543
No 204
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.35 E-value=8.9 Score=37.27 Aligned_cols=70 Identities=16% Similarity=0.337 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHHHHHhHHhhc----cCceEEcCCCCCCCCcchHhhhhhcCCc------cccee
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIE------GFPTW 325 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk~~fgkea~~----~l~~VeC~~d~~~~~~k~~~lC~~~~I~------gyPTw 325 (372)
++++++.=+..=...|+|-|-|.|.+-.|-|.+-..+ .+++-+.|... .++..++++|. -.||.
T Consensus 136 deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr------fpd~a~kfris~s~~srQLPT~ 209 (265)
T KOG0914|consen 136 DEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR------FPDVAAKFRISLSPGSRQLPTY 209 (265)
T ss_pred HHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc------CcChHHheeeccCcccccCCeE
Confidence 3444444344446666699999999999988764322 24444444322 34666778774 57998
Q ss_pred EE--CCEE
Q 017385 326 VI--NGQV 331 (372)
Q Consensus 326 ~i--~G~~ 331 (372)
++ +|+.
T Consensus 210 ilFq~gkE 217 (265)
T KOG0914|consen 210 ILFQKGKE 217 (265)
T ss_pred EEEccchh
Confidence 88 5643
No 205
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=80.91 E-value=2.1 Score=36.06 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.6
Q ss_pred HHHHHHhhhcCeeEEeccCCHH-HHHHHHHHhH
Q 017385 257 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 288 (372)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WC~h-C~~qk~~fgk 288 (372)
+++.+.-.+.-+..|++.||+. |.++-+.+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 4454442233477788999997 9987655443
No 206
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=80.84 E-value=2.4 Score=39.16 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCeeEEeccCCHHHHHHH---HHHhHHhhccCc--eEEcCCCC--C-CCCcchHhhhh-hcCCcccceeE
Q 017385 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQK---QMFGSEAVKQLN--YVECFPDG--Y-RKGTKIAKACS-DAKIEGFPTWV 326 (372)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WC~hC~~qk---~~fgkea~~~l~--~VeC~~d~--~-~~~~k~~~lC~-~~~I~gyPTw~ 326 (372)
.++|++.-.+.=+..|+|.|||.|+++. +++.+-..+.+. -+-|+.-+ . ....+..+.|+ ++++. ||-..
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~ 95 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFS 95 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEE
Confidence 4567665444446778899999997543 122221112233 46664211 0 11123456776 68874 88752
Q ss_pred ---ECCEE
Q 017385 327 ---INGQV 331 (372)
Q Consensus 327 ---i~G~~ 331 (372)
+||+.
T Consensus 96 k~dvnG~~ 103 (183)
T PRK10606 96 KIEVNGEG 103 (183)
T ss_pred EEccCCCC
Confidence 36643
No 207
>PRK13599 putative peroxiredoxin; Provisional
Probab=80.59 E-value=4 Score=38.51 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=46.9
Q ss_pred eEEeccCCHHHHHHHHHHhHHh--h--ccCce--EEcCCCCCC------------CC-------cchHhhhhhcCCc---
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGYR------------KG-------TKIAKACSDAKIE--- 320 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea--~--~~l~~--VeC~~d~~~------------~~-------~k~~~lC~~~~I~--- 320 (372)
.+|.|.|||.|..+-+.|.+.. . ..+.. |.+|..... .+ ....++++++|+.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~ 113 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPG 113 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccC
Confidence 5899999999999765544311 0 11222 222211000 00 0123678889873
Q ss_pred ----ccceeEE---CCEE-----e-eeccCCchhhhhhhccccccc
Q 017385 321 ----GFPTWVI---NGQV-----F-IVGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 321 ----gyPTw~i---~G~~-----y-~~G~rsl~~L~~~v~~~~~~~ 353 (372)
..|+-+| +|+. | ..-.|+.+++.+.++.+...+
T Consensus 114 ~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~ 159 (215)
T PRK13599 114 KGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTAD 159 (215)
T ss_pred CCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhh
Confidence 6788555 4654 1 123478888888887664433
No 208
>PRK12559 transcriptional regulator Spx; Provisional
Probab=80.10 E-value=2.3 Score=37.14 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=24.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 302 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d 302 (372)
+++|+-++|+.|++.+..+.+. .-...+++...+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCC
Confidence 6799999999999999999863 323344555443
No 209
>PRK04388 disulfide bond formation protein B; Provisional
Probab=79.17 E-value=10 Score=34.58 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhc--CCCCCCCC--------------------CcccccccccccchhccCCchhHHHHHHHHH
Q 017385 68 GIGGVGFLETTYLSYLKLT--NSDAFCPI--------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (372)
Q Consensus 68 ~La~iGll~S~YLt~~k~~--~~~~~C~i--------------------~~~sC~~VL~S~ya~lfGiP~sl~GllaY~~ 125 (372)
..++.|+.+++|-.+.+.. +....|.. +.++|+++- | ++||++.+.+-+++|.+
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~---w-~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID---W-RFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc---c-hhhccCHHHHHHHHHHH
Confidence 5568899999998887753 33457841 124688754 3 57999999999999998
Q ss_pred HHHHHHHh
Q 017385 126 VAVLGLLL 133 (372)
Q Consensus 126 vl~lal~~ 133 (372)
++++++..
T Consensus 154 l~~l~~~~ 161 (172)
T PRK04388 154 LALWALYA 161 (172)
T ss_pred HHHHHHHH
Confidence 88776543
No 210
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=77.94 E-value=3 Score=34.89 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=22.3
Q ss_pred eeEEe-ccCCHHHHHHHHHHhHHh----hccCceEEcCCC
Q 017385 268 AKMYG-AFWCSHCLEQKQMFGSEA----VKQLNYVECFPD 302 (372)
Q Consensus 268 ~k~Yg-A~WC~hC~~qk~~fgkea----~~~l~~VeC~~d 302 (372)
+.+|+ +.||++|.++.+.+.+-. .+.+..|-+..|
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55666 789999999977665522 123555555543
No 211
>PRK01749 disulfide bond formation protein B; Provisional
Probab=75.92 E-value=16 Score=33.61 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-CCCCC------------------C-cccccccccccchhccCCchhHHHHHHHHHHHH
Q 017385 69 IGGVGFLETTYLSYLKLTNSD-AFCPI------------------G-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV 128 (372)
Q Consensus 69 La~iGll~S~YLt~~k~~~~~-~~C~i------------------~-~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~ 128 (372)
.++.|+.+++|-...+....+ ..|+. . ..+|+++. -++||++.+-+-+++|..+++
T Consensus 81 ~al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~ 156 (176)
T PRK01749 81 SAWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLV 156 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHH
Confidence 357899999988665543232 57863 1 45799765 358999999999999998887
Q ss_pred HH
Q 017385 129 LG 130 (372)
Q Consensus 129 la 130 (372)
++
T Consensus 157 ~~ 158 (176)
T PRK01749 157 VA 158 (176)
T ss_pred HH
Confidence 75
No 212
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.99 E-value=2.6 Score=40.61 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=34.5
Q ss_pred hhhhcCCcccceeEECCEEeeeccCCchhhhhhhcccccccc
Q 017385 313 ACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQGIWLSRN 354 (372)
Q Consensus 313 lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~~~~~~~~ 354 (372)
..++.||+|.||.+++|+.-.+|.++.+.|++.++++.....
T Consensus 176 ~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 176 AAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHCCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHhccc
Confidence 567899999999999766644999999999999888755443
No 213
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=73.09 E-value=4.8 Score=36.36 Aligned_cols=76 Identities=18% Similarity=0.054 Sum_probs=53.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhhhc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQ 347 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~ 347 (372)
+..|..|-||-|++-.+..+. ..=++..++-++- .. - ..++-..++-++==|-+|||+.. +|-.+++++++++.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-~Gf~Vk~~~~~d~--~a-l-K~~~gIp~e~~SCHT~VI~Gy~v-EGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-NGFEVKVVETDDF--LA-L-KRRLGIPYEMQSCHTAVINGYYV-EGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-CCcEEEEeecCcH--HH-H-HHhcCCChhhccccEEEEcCEEE-eccCCHHHHHHHHh
Confidence 678889999999998877764 3334555555421 00 0 01233445567888999999888 99999999999976
Q ss_pred cc
Q 017385 348 GI 349 (372)
Q Consensus 348 ~~ 349 (372)
+-
T Consensus 102 ~~ 103 (149)
T COG3019 102 EK 103 (149)
T ss_pred CC
Confidence 43
No 214
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.07 E-value=3.4 Score=36.46 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhH---HhhccCceEEcCCCCCCCC--cchHhhhhhcCC-cccceeEE
Q 017385 274 FWCSHCLEQKQMFGS---EAVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI 327 (372)
Q Consensus 274 ~WC~hC~~qk~~fgk---ea~~~l~~VeC~~d~~~~~--~k~~~lC~~~~I-~gyPTw~i 327 (372)
+|||.|-+..|.+.+ .+..++.+|-|+... +.. ++....=.+.++ .+.||+.-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeE
Confidence 599999999988765 234456677776421 110 111122234566 99999655
No 215
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=72.82 E-value=3.3 Score=38.34 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.0
Q ss_pred hhhhhcCCcccceeEECCEEe
Q 017385 312 KACSDAKIEGFPTWVINGQVF 332 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i~G~~y 332 (372)
+..+++||+|.||.+|||+..
T Consensus 158 ~~a~~~gI~gtPtfiInGky~ 178 (207)
T PRK10954 158 KAAADLQLRGVPAMFVNGKYM 178 (207)
T ss_pred HHHHHcCCCCCCEEEECCEEE
Confidence 455789999999999999875
No 216
>PRK02110 disulfide bond formation protein B; Provisional
Probab=72.75 E-value=22 Score=32.43 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCC-C--------------------cccccccccccchhccCCchhHHHHHHHHHH
Q 017385 68 GIGGVGFLETTYLSYLKLTNSDAFCPI-G--------------------GASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126 (372)
Q Consensus 68 ~La~iGll~S~YLt~~k~~~~~~~C~i-~--------------------~~sC~~VL~S~ya~lfGiP~sl~GllaY~~v 126 (372)
..++.|+..+.|-.+.+...+ ..|.. + .++|+++- -++||++.+.+-+++|.++
T Consensus 79 l~a~~G~~ia~~h~~~q~~p~-~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~~----w~llGlsmp~wsli~F~~~ 153 (169)
T PRK02110 79 LSALGGIAVAGRHVYIQLNPG-FSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETPY----PPILGLSLPGWALIAFVLI 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCcC----ccccccCHHHHHHHHHHHH
Confidence 446889999999888775322 56751 1 24577643 3589999999999998877
Q ss_pred HHHHHH
Q 017385 127 AVLGLL 132 (372)
Q Consensus 127 l~lal~ 132 (372)
+++.+.
T Consensus 154 ~l~~~~ 159 (169)
T PRK02110 154 AVAVAV 159 (169)
T ss_pred HHHHHH
Confidence 666433
No 217
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=71.97 E-value=3.1 Score=36.34 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=19.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHH
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSE 289 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgke 289 (372)
+..|+-|-||||++..+...+.
T Consensus 19 i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 19 VIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred EEEEECCCCcchhhhhHHHHHH
Confidence 7788899999999999887664
No 218
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.32 E-value=7.2 Score=34.11 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-++|+.|++.++.+.+. .....++|...+.... .+..+++++.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 5799999999999999999863 2233345544333221 22455565544
No 219
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=69.77 E-value=20 Score=35.18 Aligned_cols=99 Identities=8% Similarity=0.029 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhcC--eeEEeccCCHHHHHHHHHHhHHh--h--ccCce--EEcCCCC----C-C--------CC------
Q 017385 255 FALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDG----Y-R--------KG------ 307 (372)
Q Consensus 255 ~~~~la~~L~~~g--~k~YgA~WC~hC~~qk~~fgkea--~--~~l~~--VeC~~d~----~-~--------~~------ 307 (372)
..++|.+.++..- ..||.|.|||.|.++-+.|.+.. . ..+.. |.+|... + + .+
T Consensus 88 ~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlL 167 (261)
T PTZ00137 88 VQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLF 167 (261)
T ss_pred eEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEE
Confidence 3467777655433 33445899999999765554311 1 11222 2222200 0 0 00
Q ss_pred -cchHhhhhhcCCc-----ccceeEE---CCEE-e-----eeccCCchhhhhhhccccccc
Q 017385 308 -TKIAKACSDAKIE-----GFPTWVI---NGQV-F-----IVGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 308 -~k~~~lC~~~~I~-----gyPTw~i---~G~~-y-----~~G~rsl~~L~~~v~~~~~~~ 353 (372)
++..++++++|+. ..|+-+| +|+. | ....|+.+|+.+.++.++..+
T Consensus 168 sD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~ 228 (261)
T PTZ00137 168 SDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAE 228 (261)
T ss_pred EcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhh
Confidence 0124788999985 4788444 5654 1 144588999988887666544
No 220
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=69.52 E-value=4.7 Score=34.54 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=17.3
Q ss_pred eeEEeccCCHHHHHHHHHHhH
Q 017385 268 AKMYGAFWCSHCLEQKQMFGS 288 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgk 288 (372)
+.+|+.+-||||.++.+.+.+
T Consensus 16 v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 16 VTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEE-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhh
Confidence 778999999999999877664
No 221
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=68.66 E-value=3.2 Score=37.87 Aligned_cols=95 Identities=7% Similarity=-0.062 Sum_probs=50.5
Q ss_pred HHHHHHHhhhcCeeEEe-ccCCHHHHHHHHHHhHHh----hccCceEEcCCCCC---------C---CC-------cchH
Q 017385 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA----VKQLNYVECFPDGY---------R---KG-------TKIA 311 (372)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WC~hC~~qk~~fgkea----~~~l~~VeC~~d~~---------~---~~-------~k~~ 311 (372)
.+++++.-.+.-+.+|+ |.|||+|.++-+.|.+.. .+.+..+-+..|.. . .+ ++..
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~ 102 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTG 102 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCcc
Confidence 34555543333466676 999999999876664311 11233322222210 0 00 1134
Q ss_pred hhhhhcCCc------ccce-eEE--CCEE---e---eeccCCchhhhhhhcccc
Q 017385 312 KACSDAKIE------GFPT-WVI--NGQV---F---IVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 312 ~lC~~~~I~------gyPT-w~i--~G~~---y---~~G~rsl~~L~~~v~~~~ 350 (372)
++++++||. ..|+ .+| +|+. + ....++.++|.+.++...
T Consensus 103 ~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~ 156 (187)
T TIGR03137 103 VLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQ 156 (187)
T ss_pred HHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 778889986 3585 666 5754 1 012357777777665443
No 222
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=68.20 E-value=8.2 Score=32.91 Aligned_cols=50 Identities=10% Similarity=0.216 Sum_probs=32.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I 319 (372)
+++|+-|.|+.|++.++.+.+. .....++|-..+.. ...+..++.++.|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-gi~~~~~d~~~~p~-s~~eL~~~l~~~g~ 51 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-GHEVEVRDLLTEPW-TAETLRPFFGDLPV 51 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-CCCcEEeehhcCCC-CHHHHHHHHHHcCH
Confidence 6899999999999999988763 33334455443332 21235566666654
No 223
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=67.72 E-value=24 Score=28.71 Aligned_cols=37 Identities=5% Similarity=-0.192 Sum_probs=19.9
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 017385 194 ISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQP 231 (372)
Q Consensus 194 ltl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (372)
+...|..|.+..+. ..+++-+++++++++|+..+++.
T Consensus 28 ~~~fG~~~~~~~~~-l~~~i~~v~~lL~~lGii~DPTT 64 (78)
T TIGR01598 28 LDNFGVLWLSFNRQ-LNAPIAAITTILAVVGIIMDPTT 64 (78)
T ss_pred HHHhcchHHHHHHH-HHHHHHHHHHHHHHHheecCCCC
Confidence 34556677655442 23344445555666666666544
No 224
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=66.53 E-value=13 Score=31.80 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.6
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 017385 177 TCSYCLTSALLSFSLFFIS 195 (372)
Q Consensus 177 lCpyC~~savisi~Lf~lt 195 (372)
.||||+..|+.....+...
T Consensus 59 sCpwC~gvWvA~~~~~~~v 77 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYV 77 (105)
T ss_pred cChhHHHHHHHHHHHHHHH
Confidence 7999999999887776543
No 225
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=62.64 E-value=6.8 Score=36.23 Aligned_cols=19 Identities=21% Similarity=0.810 Sum_probs=16.2
Q ss_pred eeEEeccCCHHHHHHHHHH
Q 017385 268 AKMYGAFWCSHCLEQKQMF 286 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~f 286 (372)
++.|+.+-||||.+..+.+
T Consensus 41 VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 41 VLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred EEEEeCCCCccHHHhcccc
Confidence 8888899999999987543
No 226
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.75 E-value=13 Score=30.52 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=45.8
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCC--------CcchHhhhhhcCCcccceeEE-CCEEeeec
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRK--------GTKIAKACSDAKIEGFPTWVI-NGQVFIVG 335 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~--------~~k~~~lC~~~~I~gyPTw~i-~G~~y~~G 335 (372)
++|||--||.|...++.|.+- .-+.++||.+....|= ..+.-+-.++.|-=|.|.... +||.. -|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vV-l~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVV-LG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEE-Ee
Confidence 799999999999999999884 4456789987654321 011233455678889999888 45555 44
No 227
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.01 E-value=5 Score=38.69 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEEC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~ 328 (372)
++-|+|+||..|+.+++.|..-+ .+++.++.-+.++ ..++|..+.|++-|+.+.+
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~------~~eis~~~~v~~vp~~~~~ 77 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE------FPEISNLIAVEAVPYFVFF 77 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh------hhHHHHHHHHhcCceeeee
Confidence 66788999999999998876522 2455566666553 5689999999999997773
No 228
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=60.52 E-value=37 Score=25.51 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=35.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCC-cccceeEECCEEe
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI-EGFPTWVINGQVF 332 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I-~gyPTw~i~G~~y 332 (372)
+++|+.+.||.|.+.+-.+.. ..-..+.++.+.. .+ ..+.-+..-. ...|+++.+|+..
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~-~gl~~~~~~~~~~--~~---~~~~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALAL-KGVPYEYVEEDLG--NK---SELLLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHH-cCCCCEEEEeCcc--cC---CHHHHHhCCCCCCCCEEEECCEEe
Confidence 478999999999999877764 2222334444432 11 1222122333 6899998887653
No 229
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=35 Score=33.07 Aligned_cols=90 Identities=9% Similarity=0.059 Sum_probs=64.6
Q ss_pred hhhcCeeEEeccCCHHHHHHHHHHhHH-hhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchh
Q 017385 263 LHAIGAKMYGAFWCSHCLEQKQMFGSE-AVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRAR 341 (372)
Q Consensus 263 L~~~g~k~YgA~WC~hC~~qk~~fgke-a~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~ 341 (372)
+..+-+|.|--..|-.|..+=+-..+. --.++.++|-.. ...+.-+.+|=+.|..+++||.|.-+..+.++
T Consensus 8 ~~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~--------p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ 79 (265)
T COG5494 8 EIEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL--------PPFLAFEKGVISVPSVFIDGELVYADPVDPEE 79 (265)
T ss_pred hhheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC--------ChHHHhhcceeecceEEEcCeEEEcCCCCHHH
Confidence 445568999888999999886655442 112333444331 23556678999999999999996589999999
Q ss_pred hhhhhcccccccccccccc
Q 017385 342 PVRPRQGIWLSRNESAQLN 360 (372)
Q Consensus 342 L~~~v~~~~~~~~~~~~~~ 360 (372)
+++.++|-..++.+....+
T Consensus 80 ies~~~G~~~~~iDv~~~V 98 (265)
T COG5494 80 IESILSGQVTKQIDVASLV 98 (265)
T ss_pred HHHHHcCccccccchhhHH
Confidence 9999999777766655443
No 230
>PLN02412 probable glutathione peroxidase
Probab=51.55 E-value=33 Score=30.62 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred ccCCChhHHHHHHHhhhcCeeEEeccCCH--------HHHHHHHHHhHHhhccCceE-EcCCCCCCCCcchHhhhh----
Q 017385 249 TTSSSPFALSLAKHLHAIGAKMYGAFWCS--------HCLEQKQMFGSEAVKQLNYV-ECFPDGYRKGTKIAKACS---- 315 (372)
Q Consensus 249 tt~s~~~~~~la~~L~~~g~k~YgA~WC~--------hC~~qk~~fgkea~~~l~~V-eC~~d~~~~~~k~~~lC~---- 315 (372)
+...-|...++.+.+++.|+.++ +-.|. -..+.++.|.++..-..+.+ +-++++.... +....-.
T Consensus 44 c~~e~~~l~~l~~~~~~~g~~vv-gv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~-~~~~~~~~~~~ 121 (167)
T PLN02412 44 TDSNYKELNVLYEKYKEQGFEIL-AFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTA-PLYKYLKAEKG 121 (167)
T ss_pred hHHHHHHHHHHHHHHhhCCcEEE-EecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCCCC-HHHHHHHhhCC
Confidence 33345677889999999999998 66663 23455666654432334444 2234431110 0000000
Q ss_pred ---hcCCcccce-eEE--CCEE--eeeccCCchhhhhhhccc
Q 017385 316 ---DAKIEGFPT-WVI--NGQV--FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 316 ---~~~I~gyPT-w~i--~G~~--y~~G~rsl~~L~~~v~~~ 349 (372)
..+|++.|| ++| +|+. ...|..+.++|++.+..+
T Consensus 122 ~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 122 GLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 023788899 555 5765 228999999998876554
No 231
>PRK02110 disulfide bond formation protein B; Provisional
Probab=49.83 E-value=1e+02 Score=28.05 Aligned_cols=28 Identities=14% Similarity=0.416 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHH
Q 017385 166 LYILSTNFSGATCSYCLTSALLSFSLFFI 194 (372)
Q Consensus 166 lyil~~~vI~alCpyC~~savisi~Lf~l 194 (372)
+|++.+. --.-|+.|+.--+.-+.+.++
T Consensus 30 l~~Q~~~-g~~PC~LCi~QR~~~~~i~l~ 57 (169)
T PRK02110 30 LYLQYVK-GEDPCPLCIIQRYAFLLIAIF 57 (169)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 4666654 578999999887666555543
No 232
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=49.46 E-value=6.2 Score=34.50 Aligned_cols=17 Identities=53% Similarity=1.112 Sum_probs=12.2
Q ss_pred eeEEeccCCHHHHHHHHHHhHH
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSE 289 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgke 289 (372)
-.|||||||-- +.|++|
T Consensus 93 stmygapwcdi-----qffeqe 109 (159)
T PF14673_consen 93 STMYGAPWCDI-----QFFEQE 109 (159)
T ss_pred ccccCCCccce-----eehhhc
Confidence 56999999963 455554
No 233
>PRK01749 disulfide bond formation protein B; Provisional
Probab=49.21 E-value=1.4e+02 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHH
Q 017385 166 LYILSTNFSGATCSYCLTSALLSFSLFFI 194 (372)
Q Consensus 166 lyil~~~vI~alCpyC~~savisi~Lf~l 194 (372)
+|+|.+. --.-|+.|+.--..-+.+.++
T Consensus 30 l~~Q~~l-gl~PC~LCi~QR~~~~~l~l~ 57 (176)
T PRK01749 30 LYFQHVM-LLKPCVMCIYERVALFGILGA 57 (176)
T ss_pred HHHHHHc-CCCCcHhHHHHHHHHHHHHHH
Confidence 4666654 468999999887655554443
No 234
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=48.89 E-value=16 Score=33.65 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.8
Q ss_pred hhhhhcCCcccceeEEC---C--EEeeeccCCchhhhhhh
Q 017385 312 KACSDAKIEGFPTWVIN---G--QVFIVGSQWRARPVRPR 346 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i~---G--~~y~~G~rsl~~L~~~v 346 (372)
+...+.||.|.||.+++ | |.+ -|..-++.+++++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~f-wG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMF-FGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccce-ecCCcHHHHHHHh
Confidence 44567899999999994 4 678 9999999988764
No 235
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=1.4e+02 Score=27.37 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Q 017385 148 RLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (372)
Q Consensus 148 rw~ll~~s~~~av~s~yLlyil~~~vI~alCpyC~~savisi~Lf~lt 195 (372)
.|++++. ++++....+=+|++... --+-|+.|+.--+..+.+.++.
T Consensus 14 ~~ll~~~-~~~~~~~~~al~fq~i~-g~~PC~LC~~QR~~~~~~~~i~ 59 (170)
T COG1495 14 LWLLLAL-LGLALALLAALYFQYIL-GLEPCPLCLYQRIAMYGLGVIL 59 (170)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHH
Confidence 4444433 23333444445666655 4689999999988887755433
No 236
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=46.89 E-value=92 Score=23.21 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=37.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
+++|+.+-|+.|++..-.+.. ..-..+.++++..... .+..+.-+.+--...|+++.+|+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~-~~i~~~~~~~~~~~~~--~~~~~~~~~~P~~~vP~l~~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEE-KGVDYELVPVDLTKGE--HKSPEHLARNPFGQIPALEDGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHH-cCCCcEEEEeCccccc--cCCHHHHhhCCCCCCCEEEECCEE
Confidence 578988999999999876654 2223445555542111 112233345677889999877754
No 237
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=45.89 E-value=69 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=30.2
Q ss_pred ccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEe
Q 017385 273 AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVF 332 (372)
Q Consensus 273 A~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y 332 (372)
..|||.|.+.+-.+.. +.-....++++.+. ...-..+|+.+.+|+..
T Consensus 13 ~s~sp~~~~v~~~L~~-~~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l 59 (72)
T cd03054 13 PSLSPECLKVETYLRM-AGIPYEVVFSSNPW------------RSPTGKLPFLELNGEKI 59 (72)
T ss_pred CCCCHHHHHHHHHHHh-CCCceEEEecCCcc------------cCCCcccCEEEECCEEE
Confidence 3599999999887764 22233446665421 12234799999988765
No 238
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=45.12 E-value=13 Score=29.09 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=20.0
Q ss_pred CCHHHHHHH--HHHhHHhhccCceEEcCCCCC
Q 017385 275 WCSHCLEQK--QMFGSEAVKQLNYVECFPDGY 304 (372)
Q Consensus 275 WC~hC~~qk--~~fgkea~~~l~~VeC~~d~~ 304 (372)
=||.|+.|- ++|.+ +.++.|||-.-|+
T Consensus 12 ~CP~C~~~Dtl~mW~E---n~ve~vECV~CG~ 40 (66)
T COG3529 12 VCPACQAQDTLAMWRE---NNVEIVECVKCGH 40 (66)
T ss_pred CCcccchhhHHHHHHh---cCCceEehhhcch
Confidence 599999997 56775 4688888865443
No 239
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=44.90 E-value=41 Score=28.44 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=33.1
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I 319 (372)
+++||-|-|+-|++.+..+.+ +.....++|-..+.. ..++..++.++.|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~-~~i~~~~~di~~~p~-t~~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLED-KGIEPEVVKYLKNPP-TKSELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHH-CCCCeEEEeccCCCc-CHHHHHHHHHHcCC
Confidence 479999999999999998876 333444555544332 22345667776554
No 240
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=43.62 E-value=1.6e+02 Score=32.78 Aligned_cols=65 Identities=17% Similarity=0.417 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CCCC--CCcccccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 017385 68 GIGGVGFLETTYLSYLKLTNSD--AFCP--IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (372)
Q Consensus 68 ~La~iGll~S~YLt~~k~~~~~--~~C~--i~~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~ 133 (372)
++++.|++.++++.+.-++..+ ..=| ..+-+=.-+|+ .++-++--|+=+.|-..|.+...++++.
T Consensus 125 vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA~ 193 (648)
T COG1138 125 VLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVAG 193 (648)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHHH
Confidence 5677777777777777665321 1111 11345667888 8888899999999999999888877664
No 241
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=41.43 E-value=58 Score=28.26 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=37.6
Q ss_pred CceEEcCCCCCCCCcchHhhhhhcCCc--ccceeEE-C--CEEe--eeccCCchhhhhhhccccccc
Q 017385 294 LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI-N--GQVF--IVGSQWRARPVRPRQGIWLSR 353 (372)
Q Consensus 294 l~~VeC~~d~~~~~~k~~~lC~~~~I~--gyPTw~i-~--G~~y--~~G~rsl~~L~~~v~~~~~~~ 353 (372)
+.++=.|.+. +..+-+.+||. +||+..+ + +.+| ..|.-+.|.+.+|++++..-.
T Consensus 58 i~Fv~vd~~~------~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 58 WGWLWTEAGA------QLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred EEEEEEeCcc------cHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 5666665543 33566789995 5999877 2 2255 369999999999999885543
No 242
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.47 E-value=86 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccCCCCC
Q 017385 210 VQLCIASLVVAALSTSYSSIQPLSSSVAEANLPF 243 (372)
Q Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (372)
..++.+++++++++|+..++++...++.+..+.|
T Consensus 46 ~~~v~~vl~iL~~~Gii~DPTT~G~sDS~~al~y 79 (84)
T PF04531_consen 46 SNIVNAVLTILVILGIINDPTTKGISDSEQALTY 79 (84)
T ss_pred HHHHHHHHHHHHHheeeeCCCCCCCCcHHHHHhc
Confidence 3456666667777777776654433333333444
No 243
>PRK04388 disulfide bond formation protein B; Provisional
Probab=39.84 E-value=2e+02 Score=26.18 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHhh
Q 017385 166 LYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (372)
Q Consensus 166 lyil~~~vI~alCpyC~~savisi~Lf~ltl~ 197 (372)
+|++... --.-|+.|+.--+.-+.+.++.+.
T Consensus 27 ly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~li 57 (172)
T PRK04388 27 IFVQLHL-GLEPCPLCIFQRIAFAALALLFLI 57 (172)
T ss_pred HHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4666654 468999999988666655554443
No 244
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.42 E-value=9.8 Score=38.27 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCccch
Q 017385 162 SAYFLYILSTNFSGATCSY 180 (372)
Q Consensus 162 s~yLlyil~~~vI~alCpy 180 (372)
....+.|+.|+. +-+||.
T Consensus 63 iiIIiIImlF~R-rLLCPL 80 (381)
T PF05297_consen 63 IIIIIIIMLFKR-RLLCPL 80 (381)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHH-hhcCcc
Confidence 334455666774 677875
No 245
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=1.2e+02 Score=31.91 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHHHHHHhhhcC----eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECC
Q 017385 256 ALSLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (372)
Q Consensus 256 ~~~la~~L~~~g----~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G 329 (372)
+.++.++.+.+. +.-|..-.|-.|-+.-|-+.--+ -.+|.-+-.|-.- +.+.-++.+|-+.||.++||
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~------Fq~Evear~IMaVPtvflnG 177 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGAL------FQDEVEARNIMAVPTVFLNG 177 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchh------hHhHHHhccceecceEEEcc
Confidence 445666666664 67799999999999887776411 1234444443211 23445567999999999999
Q ss_pred EEeeeccCCchhhhhhhcc
Q 017385 330 QVFIVGSQWRARPVRPRQG 348 (372)
Q Consensus 330 ~~y~~G~rsl~~L~~~v~~ 348 (372)
|.+-+|..++|++.+-+.+
T Consensus 178 e~fg~GRmtleeilaki~~ 196 (520)
T COG3634 178 EEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred hhhcccceeHHHHHHHhcC
Confidence 9977999999998765443
No 246
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=38.68 E-value=1.4e+02 Score=22.72 Aligned_cols=61 Identities=3% Similarity=-0.128 Sum_probs=37.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
+++|+.+.|+.|++..-...+ .......++.+..... .+.++.-+-..-...|+.+.+|+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e-~gl~~e~~~v~~~~~~--~~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAE-KGLRCEEYDVSLPLSE--HNEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHH-cCCCCEEEEecCCcCc--cCCHHHHHhCcCCCCCEEEECCEE
Confidence 468999999999888755543 3333445666542211 112344444667788999877765
No 247
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=38.06 E-value=1.9e+02 Score=27.82 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHhh
Q 017385 166 LYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (372)
Q Consensus 166 lyil~~~vI~alCpyC~~savisi~Lf~ltl~ 197 (372)
+|+|... -=.-|+.|+.--+.-+.+.+..+.
T Consensus 42 ~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~gLI 72 (218)
T PRK04307 42 SFFQIYL-YMAPCEQCVYIRFAMFVMAIGGVI 72 (218)
T ss_pred HHHHHhc-CCCccHHHHHHHHHHHHHHHHHHH
Confidence 4666655 468999999988766666554433
No 248
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.93 E-value=1.1e+02 Score=32.56 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=50.8
Q ss_pred eeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE---CCE----EeeeccCC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VFIVGSQW 338 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i---~G~----~y~~G~rs 338 (372)
.+.|..+-|..|.+++++.++-+ .++|.+.+-+.+. ..++.++++|+-.|+..+ +|+ +| .|.=.
T Consensus 370 l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~------~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f-~g~P~ 442 (555)
T TIGR03143 370 LLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE------EPESETLPKITKLPTVALLDDDGNYTGLKF-HGVPS 442 (555)
T ss_pred EEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc------chhhHhhcCCCcCCEEEEEeCCCcccceEE-EecCc
Confidence 66687888999999998887632 3455543333221 246677999999999887 332 25 77766
Q ss_pred chhhhhhhccc
Q 017385 339 RARPVRPRQGI 349 (372)
Q Consensus 339 l~~L~~~v~~~ 349 (372)
=.|+..|+..+
T Consensus 443 G~Ef~s~i~~i 453 (555)
T TIGR03143 443 GHELNSFILAL 453 (555)
T ss_pred cHhHHHHHHHH
Confidence 67777766654
No 249
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=34.70 E-value=1.4e+02 Score=22.05 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=34.6
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEE-CCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i-~G~~ 331 (372)
.++|+.+.||.|.+.+-.+.. ....++ .++.+.. ++ ..+.=+...-...|+++. +|+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~-~~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHE-TGLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHH-hCCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCCE
Confidence 378999999999998866553 122344 4555432 11 123223355677899886 5543
No 250
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=34.58 E-value=34 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=35.0
Q ss_pred cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--C--CE--Eeeecc-CCchhhhhhhccc
Q 017385 293 QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--GQ--VFIVGS-QWRARPVRPRQGI 349 (372)
Q Consensus 293 ~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~--G~--~y~~G~-rsl~~L~~~v~~~ 349 (372)
.+.+..++ ..++|++++|+. |+.++ + ++ .| .|. .+.++|.+|++.-
T Consensus 22 ~~~F~~~~---------~~~~~~~~~~~~-p~i~~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 22 DYQFGVTF---------NEELAKKYGIKE-PTIVVYKKFDEKPVVY-DGDKFTPEELKKFIKKN 74 (184)
T ss_dssp TSEEEEEE----------HHHHHHCTCSS-SEEEEEECTTTSEEEE-SSSTTSHHHHHHHHHHH
T ss_pred CcEEEEEc---------HHHHHHHhCCCC-CcEEEeccCCCCceec-ccccCCHHHHHHHHHHh
Confidence 35566665 247899999999 99887 2 32 38 998 7999999999855
No 251
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=34.55 E-value=8 Score=37.73 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.9
Q ss_pred eccCCHHHHHH
Q 017385 272 GAFWCSHCLEQ 282 (372)
Q Consensus 272 gA~WC~hC~~q 282 (372)
..+|||+||.|
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46799999965
No 252
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=34.21 E-value=1.2e+02 Score=27.62 Aligned_cols=58 Identities=7% Similarity=-0.045 Sum_probs=37.9
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
.+.|+.++|+.|++..-.+.. ..-....++.+.+. + .++.=+.+--.-.|+++.+|..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e-~gl~~e~~~v~~~~--~---~~~~~~~nP~g~VPvL~~~g~~ 68 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAE-KGVSVEIEQVEKDN--L---PQDLIDLNPYQSVPTLVDRELT 68 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHH-CCCCCEEEeCCccc--C---CHHHHHhCCCCCCCEEEECCEE
Confidence 789999999999998866654 33344556666532 2 1232223455678999888764
No 253
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.85 E-value=27 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.3
Q ss_pred hhhhhcCCcccceeEE--CCEEe
Q 017385 312 KACSDAKIEGFPTWVI--NGQVF 332 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i--~G~~y 332 (372)
.+|++.++.||||+.+ ||+.|
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceE
Confidence 4899999999999888 88875
No 254
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=32.82 E-value=9.6 Score=37.78 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=7.9
Q ss_pred eccCCHHHHH
Q 017385 272 GAFWCSHCLE 281 (372)
Q Consensus 272 gA~WC~hC~~ 281 (372)
+.+|||+||+
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4679999984
No 255
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=32.32 E-value=2.4e+02 Score=21.90 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=43.6
Q ss_pred CeeEEeccCCHHHHHHHHHHhHHhh---ccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CC----EEeeeccC
Q 017385 267 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVFIVGSQ 337 (372)
Q Consensus 267 g~k~YgA~WC~hC~~qk~~fgkea~---~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G----~~y~~G~r 337 (372)
-++-|+..+++ ...+.|.+-|. +.+.+..++. .++..+++++. |+..+ +. ..| .|..
T Consensus 20 ~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~---------~~~~~~~~~~~-~~i~l~~~~~~~~~~y-~g~~ 85 (97)
T cd02981 20 VVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD---------KEVAKKLKVKP-GSVVLFKPFEEEPVEY-DGEF 85 (97)
T ss_pred EEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh---------HHHHHHcCCCC-CceEEeCCcccCCccC-CCCC
Confidence 36667799998 45556665331 2466777763 25555677765 77666 21 238 9998
Q ss_pred Cchhhhhhhc
Q 017385 338 WRARPVRPRQ 347 (372)
Q Consensus 338 sl~~L~~~v~ 347 (372)
+.++|.+|++
T Consensus 86 ~~~~l~~fi~ 95 (97)
T cd02981 86 TEESLVEFIK 95 (97)
T ss_pred CHHHHHHHHH
Confidence 8999999875
No 256
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.74 E-value=29 Score=31.51 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=13.5
Q ss_pred hhhhhcCCcccceeEE
Q 017385 312 KACSDAKIEGFPTWVI 327 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i 327 (372)
+++++.+|+++||.++
T Consensus 138 ~la~~m~I~~~Ptlvi 153 (176)
T PF13743_consen 138 QLAREMGITGFPTLVI 153 (176)
T ss_dssp HHHHHTT-SSSSEEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 5788999999999888
No 257
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=31.53 E-value=93 Score=25.64 Aligned_cols=60 Identities=7% Similarity=-0.124 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhc----CCcccceeEECCEEeeeccCCchhhh
Q 017385 278 HCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA----KIEGFPTWVINGQVFIVGSQWRARPV 343 (372)
Q Consensus 278 hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~----~I~gyPTw~i~G~~y~~G~rsl~~L~ 343 (372)
+|++.+.++.. ++++|-|+|.+.... ...++=+.. +-+..|-.++||+-. -|-.++.+|.
T Consensus 18 ~~~~v~~lL~~---k~I~f~eiDI~~d~~--~r~em~~~~~~~~g~~tvPQIFi~~~~i-Gg~ddl~~l~ 81 (92)
T cd03030 18 RQQEVLGFLEA---KKIEFEEVDISMNEE--NRQWMRENVPNENGKPLPPQIFNGDEYC-GDYEAFFEAK 81 (92)
T ss_pred HHHHHHHHHHH---CCCceEEEecCCCHH--HHHHHHHhcCCCCCCCCCCEEEECCEEe-eCHHHHHHHH
Confidence 78888888876 478888887654211 112222221 345666677776543 5554444443
No 258
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.06 E-value=1.7e+02 Score=34.53 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 017385 179 SYCLTSALLSFSLFFISLK 197 (372)
Q Consensus 179 pyC~~savisi~Lf~ltl~ 197 (372)
..++...++.+.++++.+.
T Consensus 111 ~~~~~~a~~~~~~~~~L~~ 129 (1094)
T PRK02983 111 SLSIIGFAVHVVAIVLLVL 129 (1094)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4566666666666655443
No 259
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=30.82 E-value=7.9e+02 Score=27.38 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=28.9
Q ss_pred cccccccccccchhccCCchhHHHHHHHHHHHHHHHHh
Q 017385 96 GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (372)
Q Consensus 96 ~~sC~~VL~S~ya~lfGiP~sl~GllaY~~vl~lal~~ 133 (372)
..+=.-.|+++| -.+-.|..++|.+.|++...+++..
T Consensus 157 g~~lnP~Lq~~~-l~iHpp~l~lgya~~~v~f~~a~~~ 193 (628)
T TIGR03145 157 GRDLNPMLQDIG-LIFHPPLLYLGYVGFAVNFAMALAA 193 (628)
T ss_pred CCCCCchhcCCC-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788887 4478899999999999888877753
No 260
>PRK13191 putative peroxiredoxin; Provisional
Probab=30.41 E-value=34 Score=32.24 Aligned_cols=95 Identities=7% Similarity=0.040 Sum_probs=50.2
Q ss_pred HHHHHHhhhc-Cee-EEeccCCHHHHHHHHHHhHHh--h--ccCce--EEcCCCCCCC------------C-------cc
Q 017385 257 LSLAKHLHAI-GAK-MYGAFWCSHCLEQKQMFGSEA--V--KQLNY--VECFPDGYRK------------G-------TK 309 (372)
Q Consensus 257 ~~la~~L~~~-g~k-~YgA~WC~hC~~qk~~fgkea--~--~~l~~--VeC~~d~~~~------------~-------~k 309 (372)
..+.+.++.. -+. +|.|.|||.|...-+.|.+.+ . ..+.. |.+|.....+ + ..
T Consensus 25 ~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~ 104 (215)
T PRK13191 25 IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADP 104 (215)
T ss_pred EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECC
Confidence 3444434332 243 889999999999765554421 1 11222 2332211000 0 01
Q ss_pred hHhhhhhcCCc-------ccce-eEE--CCEEe------eeccCCchhhhhhhccccc
Q 017385 310 IAKACSDAKIE-------GFPT-WVI--NGQVF------IVGSQWRARPVRPRQGIWL 351 (372)
Q Consensus 310 ~~~lC~~~~I~-------gyPT-w~i--~G~~y------~~G~rsl~~L~~~v~~~~~ 351 (372)
..++++++|+- ..|+ ++| +|+.+ ..-.|+.+|+-+.++.+..
T Consensus 105 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~ 162 (215)
T PRK13191 105 MGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQL 162 (215)
T ss_pred chHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 24677888873 2565 555 46541 0244789999888876644
No 261
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=29.76 E-value=95 Score=26.05 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=30.7
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcC
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~ 318 (372)
+++|+-+-|+-|++.+..+.+ ......++|-..+.. ..++..++++..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~-~~i~~~~~di~~~~~-t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEE-AGIEPEIVEYLKTPP-TAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHH-CCCCeEEEecccCCc-CHHHHHHHHHHcC
Confidence 478999999999999988875 333333444433322 2233556666655
No 262
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=28.82 E-value=27 Score=30.87 Aligned_cols=63 Identities=8% Similarity=-0.042 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcC--eeEEeccCCHHHHHH-HHHHhHHh------hc-cCceEEcCCCCCCCCcchHhhhhhcCC-cccc
Q 017385 256 ALSLAKHLHAIG--AKMYGAFWCSHCLEQ-KQMFGSEA------VK-QLNYVECFPDGYRKGTKIAKACSDAKI-EGFP 323 (372)
Q Consensus 256 ~~~la~~L~~~g--~k~YgA~WC~hC~~q-k~~fgkea------~~-~l~~VeC~~d~~~~~~k~~~lC~~~~I-~gyP 323 (372)
.++|.+.++..- ..||-+-|||.|..| -+.|.+.. .. .+--|-+|. .. .+.+.|+++++ ..||
T Consensus 20 ~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~--~~---~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 20 PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND--PF---VMKAWGKALGAKDKIR 93 (155)
T ss_pred eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC--HH---HHHHHHHhhCCCCcEE
Confidence 466666544322 677888999999999 55554421 11 122344443 22 25677888888 3676
No 263
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.25 E-value=53 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred hhhhhcCCcccceeEECCEEeeeccCCchhhhhhh
Q 017385 312 KACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPR 346 (372)
Q Consensus 312 ~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v 346 (372)
+...+.|+=|-|||++++|.| =|..-|.+|++.+
T Consensus 167 ~~a~srGvfGaPtfivg~q~f-wGqDRL~~lea~L 200 (203)
T COG3917 167 AEAVSRGVFGAPTFIVGDQLF-WGQDRLYQLEAEL 200 (203)
T ss_pred HHHHhcCccCCCeEEECCeee-echhHHHHHHHHH
Confidence 556678999999999999999 9998888877654
No 264
>PRK10853 putative reductase; Provisional
Probab=28.23 E-value=87 Score=26.84 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=32.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 320 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~ 320 (372)
+++||-|-|.-|++.+..+.+ ......++|--.+.. ...+..+++.+.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-~~i~~~~~d~~k~p~-s~~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-QGIDYRFHDYRVDGL-DSELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-cCCCcEEeehccCCc-CHHHHHHHHHHcCHH
Confidence 679999999999999998875 333333444332221 112356677777755
No 265
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=27.51 E-value=1.8e+02 Score=29.53 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=55.5
Q ss_pred ChhHHHHHHHhhhc--CeeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECCE
Q 017385 253 SPFALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 330 (372)
Q Consensus 253 ~~~~~~la~~L~~~--g~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~ 330 (372)
...+..-+.||..+ ..+.|-=--||.|-+.+-.+.-- +--..+||++|-- ++ ++ +=-..+-.|-..+.||
T Consensus 74 ~lhae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyh-gisY~VVEVnpV~-r~-----eI-k~SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 74 KLHAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYH-GISYAVVEVNPVL-RQ-----EI-KWSSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhc-CCceEEEEecchh-hh-----hc-cccccccccEEEeccc
Confidence 34566778888877 68899888999999998766531 1123469998742 11 11 1124567899999887
Q ss_pred E-------------e-eeccCCchhhhhh
Q 017385 331 V-------------F-IVGSQWRARPVRP 345 (372)
Q Consensus 331 ~-------------y-~~G~rsl~~L~~~ 345 (372)
+ | |.-.++++|+.+|
T Consensus 146 qm~dSsvIIs~laTyLq~~~q~l~eiiq~ 174 (370)
T KOG3029|consen 146 QMVDSSVIISLLATYLQDKRQDLGEIIQM 174 (370)
T ss_pred eechhHHHHHHHHHHhccCCCCHHHHHHh
Confidence 5 1 2344677777766
No 266
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=27.37 E-value=72 Score=27.96 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=27.4
Q ss_pred hHhhhhhcCCcccceeEECCEEeeecc-CCchhhhhhh
Q 017385 310 IAKACSDAKIEGFPTWVINGQVFIVGS-QWRARPVRPR 346 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i~G~~y~~G~-rsl~~L~~~v 346 (372)
..++=++.|.+..|--++|||.+..|. -+.+||++|.
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWL 98 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHH
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHh
Confidence 456666789999999999999977887 5679999983
No 267
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=26.97 E-value=2.3e+02 Score=20.61 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=34.7
Q ss_pred eEEeccCCHHHHHHHHHHhHHhhccCceEEcCCC-CCCCCcchHhhhhhcCCcccceeEECCEE
Q 017385 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (372)
Q Consensus 269 k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d-~~~~~~k~~~lC~~~~I~gyPTw~i~G~~ 331 (372)
+.|+-+.|+.|.+.+-.... .....+.++.+.. +.++ ..+.-+...-...|+++.+|+.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNL-KGLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLV 61 (73)
T ss_pred EEecCCCCcchHHHHHHHHH-cCCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEE
Confidence 57877778888877665554 2334445566542 1111 2232233566789999888754
No 268
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=26.94 E-value=9.6 Score=37.25 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=10.8
Q ss_pred eccCCHHHHHHHHH
Q 017385 272 GAFWCSHCLEQKQM 285 (372)
Q Consensus 272 gA~WC~hC~~qk~~ 285 (372)
..+|||.||...++
T Consensus 254 ~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 254 GTHFCPQCQPLRPL 267 (269)
T ss_pred CcEECCCCcCCCCC
Confidence 46899999986553
No 269
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=25.10 E-value=81 Score=27.03 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.8
Q ss_pred hHhhhhhcCCcccceeEE--CCEE--eeeccCCchh
Q 017385 310 IAKACSDAKIEGFPTWVI--NGQV--FIVGSQWRAR 341 (372)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i--~G~~--y~~G~rsl~~ 341 (372)
.+++-.++|+..+|+.++ +|+. .++|.|+.++
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 567888999999999877 7765 4477777654
No 270
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=24.82 E-value=4.9e+02 Score=23.16 Aligned_cols=29 Identities=14% Similarity=0.360 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHH
Q 017385 166 LYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (372)
Q Consensus 166 lyil~~~vI~alCpyC~~savisi~Lf~lt 195 (372)
+|++... --.-|+.|+.--+..+.+.++.
T Consensus 26 ly~q~v~-gl~PC~LCi~QRi~~~~l~l~~ 54 (139)
T PRK03113 26 LYFSEIM-KFEPCVLCWYQRIFMYPFVLWL 54 (139)
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 4666554 4689999999887766555433
No 271
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=24.74 E-value=3.1e+02 Score=26.89 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=36.6
Q ss_pred ccchhccCCchhHHHHHHHHHHHHHHHHhcccCCCcccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCccchhHH
Q 017385 105 SDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIGINESYGRLIL-LGSSTSMAAASAYFLYILSTNFSGATCSYCLT 183 (372)
Q Consensus 105 S~ya~lfGiP~sl~GllaY~~vl~lal~~~~~~~~~~l~~~~~rw~l-l~~s~~~av~s~yLlyil~~~vI~alCpyC~~ 183 (372)
++--.++|+|.=+| +-+|+++.++ .+.+.++. .+ -|..+ ++++++...+.++++.+...-+ ..=|.-+.
T Consensus 23 ~~lr~~~g~~~vlf-~PGy~l~~~l--fp~~~~l~-~~----er~~ls~glSi~~~~~~g~~l~~~~~~i--~~~~i~~~ 92 (287)
T PF07760_consen 23 PPLRVILGFPFVLF-LPGYALVAAL--FPRKHDLD-GI----ERLALSVGLSIAIVPLIGLLLNYTPWGI--RLIPILIS 92 (287)
T ss_pred hHHHHHHHHHHHHH-hccHHHHHHH--ccCcCCCc-HH----HHHHHHHHHHHHHHHHHHHHHHhccCCc--chhHHHHH
Confidence 33445567776555 4466555433 33332222 12 23322 3344443334444444433221 23344444
Q ss_pred HHHHHHHHHHHHhh
Q 017385 184 SALLSFSLFFISLK 197 (372)
Q Consensus 184 savisi~Lf~ltl~ 197 (372)
..++++.+.+++..
T Consensus 93 l~~~t~~~~~~a~~ 106 (287)
T PF07760_consen 93 LSIFTLVLSIIAYI 106 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 272
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=24.71 E-value=2.6e+02 Score=23.00 Aligned_cols=66 Identities=14% Similarity=-0.056 Sum_probs=40.7
Q ss_pred ccCCHHHHHHHHHHhHHhhccCc--eEEcCCCCCCCCcchHhhhhhcCCcccceeEECCEEeeeccCCchhhhhhhcccc
Q 017385 273 AFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVFIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 273 A~WC~hC~~qk~~fgkea~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G~~y~~G~rsl~~L~~~v~~~~ 350 (372)
--+||+|++..-.+.. +.++ .++++.+. + ..++-+-+=..-.|+.+-+|+.. -+-..+.+|+...+
T Consensus 19 ~g~cpf~~rvrl~L~e---Kgi~ye~~~vd~~~--~---p~~~~~~nP~g~vPvL~~~~~~i----~eS~~I~eYLde~~ 86 (91)
T cd03061 19 IGNCPFCQRLFMVLWL---KGVVFNVTTVDMKR--K---PEDLKDLAPGTQPPFLLYNGEVK----TDNNKIEEFLEETL 86 (91)
T ss_pred CCCChhHHHHHHHHHH---CCCceEEEEeCCCC--C---CHHHHHhCCCCCCCEEEECCEEe----cCHHHHHHHHHHHc
Confidence 4689999999866653 2444 47777542 2 23444445567799988887663 23445556655443
No 273
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=24.67 E-value=1.1e+02 Score=25.80 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=35.5
Q ss_pred cCceEEcCCCCCCCCcchHhhhhhcCCcc----cceeEE---CCEEe-eeccC-Cchhhhhhhccc
Q 017385 293 QLNYVECFPDGYRKGTKIAKACSDAKIEG----FPTWVI---NGQVF-IVGSQ-WRARPVRPRQGI 349 (372)
Q Consensus 293 ~l~~VeC~~d~~~~~~k~~~lC~~~~I~g----yPTw~i---~G~~y-~~G~r-sl~~L~~~v~~~ 349 (372)
++.+|=.|.+.. ...-+.+|++. +|+..| ++++| ..+.. +.+.|.+|++++
T Consensus 51 ki~Fv~~D~~~~------~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 51 KLNFAVADKEDF------SHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred eEEEEEEcHHHH------HHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 576777765432 23556789985 999887 35566 45666 789999998876
No 274
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.31 E-value=67 Score=33.25 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHhhhcC--eeEEeccCCHHHHHHHHH-----HhHHhhcc-----CceEEcCCCCCCCCcchHhhhhhcCCccccee
Q 017385 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQM-----FGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 325 (372)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WC~hC~~qk~~-----fgkea~~~-----l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw 325 (372)
++-+.|++.. +.+|+.|==.+=-.||+. +.+-+++- +.+.-++.. |...++++.|+..-++.
T Consensus 43 Nfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~------Kd~klAKKLgv~E~~Si 116 (383)
T PF01216_consen 43 NFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK------KDAKLAKKLGVEEEGSI 116 (383)
T ss_dssp THHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT------TTHHHHHHHT--STTEE
T ss_pred HHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH------HHHHHHHhcCccccCcE
Confidence 3444444444 667777776655555532 44434433 233333322 25689999999999995
Q ss_pred EE--CCEE--eeeccCCchhhhhhhccccc
Q 017385 326 VI--NGQV--FIVGSQWRARPVRPRQGIWL 351 (372)
Q Consensus 326 ~i--~G~~--y~~G~rsl~~L~~~v~~~~~ 351 (372)
.+ +|+. | .|.++.+.|.+|+..+..
T Consensus 117 yVfkd~~~IEy-dG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 117 YVFKDGEVIEY-DGERSADTLVEFLLDLLE 145 (383)
T ss_dssp EEEETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred EEEECCcEEEe-cCccCHHHHHHHHHHhcc
Confidence 55 6776 8 899999999999876643
No 275
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=23.58 E-value=1.8e+02 Score=31.46 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=30.8
Q ss_pred ccCCchhHHHHHHHHH-HHHHHHHh-cccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017385 110 VFGVPLPFIGMFAYGL-VAVLGLLL-ARKSFPIGINESYGRLILLGSSTSMAAASAYFLYIL 169 (372)
Q Consensus 110 lfGiP~sl~GllaY~~-vl~lal~~-~~~~~~~~l~~~~~rw~ll~~s~~~av~s~yLlyil 169 (372)
+||-|+++=|+++|.+ -..+++.. .-+|++ ++..++...+.+..+..|++|+...
T Consensus 91 vfG~pLa~E~l~AFFlEstFlGl~lFGw~rl~-----~~~H~~~~~lVaiGt~lSA~wIl~A 147 (514)
T PRK15035 91 IFGAPLAMEALMAFFLESTFVGLFFFGWQRLN-----KYQHLLVTWLVAFGSNLSALWILNA 147 (514)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999965544 33456554 445666 2223333222223334677766544
No 276
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=22.52 E-value=1.4e+02 Score=29.26 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=48.0
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhc--cCceEEcCCCCCCCCcchHhhhhhcCCcccceeEE--CCEEe--eec------
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVF--IVG------ 335 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~--~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i--~G~~y--~~G------ 335 (372)
++.+|-+-++.|+.+-..+..-|.+ .+.+|.+..+. ..++.++.+++.||.++ +|+.. +.|
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~-------~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASK-------CPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECG-------CCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhc-------cCcccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 6677799999999999888876543 35677775421 12455799999999887 78641 012
Q ss_pred -cCCchhhhhhhccc
Q 017385 336 -SQWRARPVRPRQGI 349 (372)
Q Consensus 336 -~rsl~~L~~~v~~~ 349 (372)
.-+.++|+.++..+
T Consensus 223 ~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEY 237 (265)
T ss_dssp TT--HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHc
Confidence 23446788887766
No 277
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=22.43 E-value=68 Score=27.94 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.9
Q ss_pred cccccceEEEEeee
Q 017385 358 QLNNSGILLVHVHS 371 (372)
Q Consensus 358 ~~~~~g~~~~~~~~ 371 (372)
-++|-.+++||||+
T Consensus 92 ~fa~p~VayVHvr~ 105 (117)
T PF06718_consen 92 LFADPEVAYVHVRN 105 (117)
T ss_pred HhcCCCceEEEeec
Confidence 46778899999997
No 278
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=78 Score=29.46 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=20.6
Q ss_pred hcCeeEEeccCCHHHHHHHHHHhHHh
Q 017385 265 AIGAKMYGAFWCSHCLEQKQMFGSEA 290 (372)
Q Consensus 265 ~~g~k~YgA~WC~hC~~qk~~fgkea 290 (372)
...++.|.-+-||||++.-+...++.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~ 110 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKY 110 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHh
Confidence 56688888999999988877766644
No 279
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.60 E-value=1.4e+02 Score=25.91 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=29.5
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhccCceEEcCCCCCCCCcchHhhhhhc
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA 317 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~l~~VeC~~d~~~~~~k~~~lC~~~ 317 (372)
+++||-|-|.-|++.++.+.+. .....++|--.+.... .+..++.++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-gi~~~~~d~~~~p~t~-~eL~~~l~~~ 50 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-GHDVEVQDILKEPWHA-DTLRPYFGNK 50 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeccCCCcCH-HHHHHHHHHc
Confidence 6799999999999999998763 3333344443322211 2244555554
No 280
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=21.38 E-value=19 Score=36.42 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=52.5
Q ss_pred HHHHHHHhhhc--CeeEEeccCCHHHHHHHHHHhHHh--hccCceEEcCCCCCCCCcchHhhhhhcCCcccceeEECC--
Q 017385 256 ALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-- 329 (372)
Q Consensus 256 ~~~la~~L~~~--g~k~YgA~WC~hC~~qk~~fgkea--~~~l~~VeC~~d~~~~~~k~~~lC~~~~I~gyPTw~i~G-- 329 (372)
...-+.|..+- -.+.|||.|||.=+...++|.-.. ...+...-.+ +..+ ..+.-+++++.+.|+...-.
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~ve--e~~~---lpsv~s~~~~~~~ps~~~~n~t 140 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVE--ESQA---LPSVFSSYGIHSEPSNLMLNQT 140 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHH--HHhh---cccchhccccccCCcceeeccc
Confidence 44445555222 255677999995555555554321 1111111111 1111 34667789999999977632
Q ss_pred --EEeeeccCCchhhhhhhcccc
Q 017385 330 --QVFIVGSQWRARPVRPRQGIW 350 (372)
Q Consensus 330 --~~y~~G~rsl~~L~~~v~~~~ 350 (372)
..| -|.|+++.|+.+-.++-
T Consensus 141 ~~~~~-~~~r~l~sLv~fy~~i~ 162 (319)
T KOG2640|consen 141 CPASY-RGERDLASLVNFYTEIT 162 (319)
T ss_pred cchhh-cccccHHHHHHHHHhhc
Confidence 348 99999999998876664
No 281
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.36 E-value=21 Score=35.12 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.0
Q ss_pred eccCCHHHHH
Q 017385 272 GAFWCSHCLE 281 (372)
Q Consensus 272 gA~WC~hC~~ 281 (372)
..+|||+||.
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4679999984
No 282
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=21.01 E-value=4.9e+02 Score=23.19 Aligned_cols=78 Identities=19% Similarity=0.107 Sum_probs=41.3
Q ss_pred eeEEeccCCHHHHHHHHHHhHHhhcc---C--ceEEcCCCCCCCCcchHhhhhhcCC--cccceeEE--CC-E--Eee--
Q 017385 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ---L--NYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NG-Q--VFI-- 333 (372)
Q Consensus 268 ~k~YgA~WC~hC~~qk~~fgkea~~~---l--~~VeC~~d~~~~~~k~~~lC~~~~I--~gyPTw~i--~G-~--~y~-- 333 (372)
+||=-|+==|.=|++=..|.||+.+. + .-|-...-|.+. ..++.++|+| +.||...+ +| + ...
T Consensus 26 VKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~---N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~ 102 (126)
T PF07912_consen 26 VKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKE---NMELAERYKIDKEDFPVIYLFVGDKEEPVRYPF 102 (126)
T ss_dssp EEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-C---CHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-T
T ss_pred EEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchh---HHHHHHHhCCCcccCCEEEEecCCCCCCccCCc
Confidence 66655554444444444455444322 2 234443323222 4689999999 78999777 22 1 232
Q ss_pred eccCCchhhhhhhcc
Q 017385 334 VGSQWRARPVRPRQG 348 (372)
Q Consensus 334 ~G~rsl~~L~~~v~~ 348 (372)
+|.-+.+.|.+|+++
T Consensus 103 ~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 103 DGDVTADNLQRFVKS 117 (126)
T ss_dssp CS-S-HHHHHHHHHH
T ss_pred cCCccHHHHHHHHHh
Confidence 788899999999864
No 283
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=20.94 E-value=2.4e+02 Score=24.36 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhHHh---hccCc--eEEcCCCCCCCCcchHhhhhhcCCc--ccceeEE----CCEEe--eeccCCchh
Q 017385 275 WCSHCLEQKQMFGSEA---VKQLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQVF--IVGSQWRAR 341 (372)
Q Consensus 275 WC~hC~~qk~~fgkea---~~~l~--~VeC~~d~~~~~~k~~~lC~~~~I~--gyPTw~i----~G~~y--~~G~rsl~~ 341 (372)
-....++.++.+.+-| ..++. +++|+. ..++++..||+ .+|+.++ +++.+ ..|.-+.+.
T Consensus 106 ~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--------~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~ 177 (184)
T PF13848_consen 106 DNESTEAFKKELQDIAKKFKGKINFVYVDADD--------FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPES 177 (184)
T ss_dssp THHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--------THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHH
T ss_pred CchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--------hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHH
Confidence 3556666666665533 23344 556652 34688899998 9999887 34442 278888888
Q ss_pred hhhhhc
Q 017385 342 PVRPRQ 347 (372)
Q Consensus 342 L~~~v~ 347 (372)
|.+|++
T Consensus 178 i~~Fl~ 183 (184)
T PF13848_consen 178 IEKFLN 183 (184)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888865
No 284
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.80 E-value=3e+02 Score=24.77 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=51.6
Q ss_pred CChhHHHHHHHhhhcCeeEEeccCCHH--------HHHHHHHHhHHhhccCce-EEcCCCCCCCCcchHhhh--------
Q 017385 252 SSPFALSLAKHLHAIGAKMYGAFWCSH--------CLEQKQMFGSEAVKQLNY-VECFPDGYRKGTKIAKAC-------- 314 (372)
Q Consensus 252 s~~~~~~la~~L~~~g~k~YgA~WC~h--------C~~qk~~fgkea~~~l~~-VeC~~d~~~~~~k~~~lC-------- 314 (372)
.-|...++.+.+++.|+.++ +--|.. -.+.++.+.++..-..+. .+.++++.... +..+.+
T Consensus 59 e~p~l~~l~~~~~~~gv~vv-~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~-~~~~~l~~~~~~~~ 136 (183)
T PTZ00256 59 HYTQLVELYKQYKSQGLEIL-AFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTH-EIYKYLRRNSELFQ 136 (183)
T ss_pred HHHHHHHHHHHHhhCCcEEE-EEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCC-HHHHHHHhhCCCCc
Confidence 44566778888888899988 444421 233334444332222332 23444442210 011111
Q ss_pred -hhcCCcccce----eEE--CCEE---eeeccCCchhhhhhhccc
Q 017385 315 -SDAKIEGFPT----WVI--NGQV---FIVGSQWRARPVRPRQGI 349 (372)
Q Consensus 315 -~~~~I~gyPT----w~i--~G~~---y~~G~rsl~~L~~~v~~~ 349 (372)
..++++++|+ .+| +|+. + .|..+.++|++.+.+.
T Consensus 137 ~~~~~~~~iP~~~~tflID~~G~Iv~~~-~g~~~~~~l~~~I~~l 180 (183)
T PTZ00256 137 NNTNEARQIPWNFAKFLIDGQGKVVKYF-SPKVNPNEMIQDIEKL 180 (183)
T ss_pred CccccCcccCcceEEEEECCCCCEEEEE-CCCCCHHHHHHHHHHH
Confidence 1247889994 777 4654 5 7888888888766543
No 285
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.23 E-value=24 Score=34.54 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.5
Q ss_pred EeccCCHHHHH
Q 017385 271 YGAFWCSHCLE 281 (372)
Q Consensus 271 YgA~WC~hC~~ 281 (372)
=.++|||.||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 34789999984
No 286
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=20.16 E-value=2.2e+02 Score=30.88 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=30.7
Q ss_pred hccCCchhHHHHHHHHHH-HHHHHHh-cccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017385 109 VVFGVPLPFIGMFAYGLV-AVLGLLL-ARKSFPIGINESYGRLILLGSSTSMAAASAYFLYIL 169 (372)
Q Consensus 109 ~lfGiP~sl~GllaY~~v-l~lal~~-~~~~~~~~l~~~~~rw~ll~~s~~~av~s~yLlyil 169 (372)
.+||-|+++=|+++|.+= ..+++.. .-+|++ ++.+++...+.+..+..|++|+...
T Consensus 90 difG~pLa~E~l~AFFlEstFlGl~~FGW~rl~-----~~~H~~~~~lVaiGt~lSA~wIl~A 147 (522)
T PRK15097 90 DIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG-----KVQHMCVTWLVALGSNLSALWILVA 147 (522)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999666443 3455554 444566 2223333222223334677766543
Done!