BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017386
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PT+ FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL Q +GY ++ C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 164/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL + +GY + C+L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y+++ Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 7 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TY+K +V++M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQ----PANCKVESLAMFLGELSLIDADPYLKY 179
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL Q +GY ++ C++ LH YL Q+
Sbjct: 180 LPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQS 237
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 238 IREKYKHSKYHSVS 251
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 5 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 177
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 178 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 235
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 236 IREKYKNSKYHGVS 249
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y+++ Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TY+K +V++M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQ----PANCKVESLAMFLGELSLIDADPYLKY 176
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL Q +GY ++ C++ LH YL Q+
Sbjct: 177 LPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQS 234
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 235 IREKYKHSKYHSVS 248
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y+++ Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TY+K +V++M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQ----PANCKVESLAMFLGELSLIDADPYLKY 176
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL Q +GY ++ C++ LH YL Q+
Sbjct: 177 LPSLIAGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQS 234
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 235 IREKYKHSKYHSVS 248
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 7 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 179
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 180 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 237
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 238 IREKYKNSKYHGVS 251
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 11 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 183
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 184 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 241
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 242 IREKYKNSKYHGVS 255
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 6 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 178
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 179 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 236
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 237 IREKYKNSKYHGVS 250
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 6 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 178
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 179 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 236
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 237 IREKYKNSKYHGVS 250
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 176
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 177 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 234
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 235 IREKYKNSKYHGVS 248
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 200 bits (509), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 4 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 176
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 177 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 234
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 235 IREKYKNSKYHGVS 248
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 2 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 58
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 59 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 118
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 119 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 174
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +A + LA + + W SL + +GY ++ C++ LH YL Q+
Sbjct: 175 LPSVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQS 232
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 233 IREKYKNSKYHGVS 246
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 102 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYL 161
Y DI+ YL MEV K +P Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L
Sbjct: 8 YHEDIHTYLREMEV--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 162 TISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221
++YIDRFLS + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TYTK +V++M
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 222 EADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKF 280
E +LK L F+L +PTV FL ++ Q +N ++E L +L ELSL+D +K+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PANCKVESLAMFLGELSLIDADPYLKY 180
Query: 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340
LPS +AA+ LA + + W SL + +GY ++ +L LH YL Q+
Sbjct: 181 LPSVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQS 238
Query: 341 VREKYKQHKFKCVA 354
+REKYK K+ V+
Sbjct: 239 IREKYKNSKYHGVS 252
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 161/274 (58%), Gaps = 16/274 (5%)
Query: 99 CGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDT 158
C YV DIY YL +E + RP Y+ + ++V+ NMR +L+DWLV+V +++L+ +T
Sbjct: 1 CSEYVKDIYAYLRQLEEEQAVRP--KYL--LGREVTGNMRAILIDWLVQVQMKFRLLQET 56
Query: 159 LYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEV 218
+Y+T+S IDRF+ N + ++ LQL+GV++M IASKYEE+ PP + DF ++TDNTYTK ++
Sbjct: 57 MYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 116
Query: 219 VKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACV 278
+ME IL++L F LG P FLRR +++ + D ++ L YL EL++LDY V
Sbjct: 117 RQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-----VEQHTLAKYLMELTMLDYDMV 171
Query: 279 KFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLIL-HDLYLSRRG-G 336
F PS +AA LA I + WT +LQ Y Y + + L ++ + +G
Sbjct: 172 HFPPSQIAAGAFCLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLT 229
Query: 337 NLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDI 370
V+ KY K ++T P++ S +D+
Sbjct: 230 KHMTVKNKYATSKHAKISTL---PQLNSALVQDL 260
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 160/275 (58%), Gaps = 16/275 (5%)
Query: 98 ICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSD 157
+ YV DIY YL +E RP Y+ + ++V+ NMR +L+DWLV+V +++L+ +
Sbjct: 2 LSSEYVKDIYAYLRQLEAAQAVRP--KYL--LGREVTGNMRAILIDWLVQVQMKFRLLQE 57
Query: 158 TLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDE 217
T+Y+T+S IDRF+ N + ++ LQL+GV++M IASKYEE+ PP + DF ++TDNTYTK +
Sbjct: 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 218 VVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYAC 277
+ +ME IL++L F LG P FLRR +++ + D ++ L YL EL++LDY
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-----VEQHTLAKYLMELTMLDYDM 172
Query: 278 VKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLIL-HDLYLSRRG- 335
V F PS +AA LA I + WT +LQ Y Y + + L ++ + +G
Sbjct: 173 VHFPPSQIAAGAFSLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGL 230
Query: 336 GNLQAVREKYKQHKFKCVATTPSSPEIPSCYFEDI 370
V+ KY K ++T P++ S +D+
Sbjct: 231 TKHMTVKNKYATSKHAKISTL---PQLNSALVQDL 262
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 26/199 (13%)
Query: 137 MRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL--NVLNRQKLQLLGVSSMLIASKY 194
MR +L+DWL+EV E YKL +T YL + DR+++ NV+ + LQL+G+SS+ IA+K
Sbjct: 49 MRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV-KTLLQLIGISSLFIAAKL 107
Query: 195 EEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYN 254
EEI PP + F Y+TD + DE++ ME I+K+LK+ L T+ ++L + +VA
Sbjct: 108 EEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAY---- 163
Query: 255 ASNLQLEFLGYY----------LAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPW 304
++L L Y L +L +LD C++F +AAS ++ F +
Sbjct: 164 LNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY--HFSS------- 214
Query: 305 TASLQQYSGYKPSEIEGCV 323
+ +Q+ SGY+ +IE CV
Sbjct: 215 SELMQKVSGYQWCDIENCV 233
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%)
Query: 121 PLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKL 180
P Y + VQK+V +MR ++ W++EV EE K + L ++Y+DRFLSL + + +L
Sbjct: 40 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 99
Query: 181 QLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKT 240
QLLG + M +ASK +E P E C TDN+ +E+++ME ++ LK+ L + T
Sbjct: 100 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 159
Query: 241 FLRRF 245
F+ F
Sbjct: 160 FIEHF 164
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%)
Query: 121 PLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKL 180
P Y + VQK+V +MR ++ W++EV EE K + L ++Y+DRFLSL + + +L
Sbjct: 26 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 85
Query: 181 QLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKT 240
QLLG + M +ASK +E P E C TDN+ +E+++ME ++ LK+ L + T
Sbjct: 86 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 145
Query: 241 FLRRF 245
F+ F
Sbjct: 146 FIEHF 150
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Query: 121 PLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKL 180
P Y + VQ+++ +MR +L W++EV EE + + L ++Y+DR+LS + +L
Sbjct: 54 PRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQL 113
Query: 181 QLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKT 240
QLLG ML+ASK E +P +E C TD+ + ++ E +L LK++L +
Sbjct: 114 QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHD 173
Query: 241 FLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLA 293
FL + L + +LA L DY + PS +A I A
Sbjct: 174 FLAFILHRLSLPRDRQALVKKHAQTFLA-LCATDYTFAMYPPSMIATGSIGAA 225
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 122 LPDYVE--KVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQK 179
LP + ++Q +V+ + R +L+ W+ + E ++L L++S +DR+L ++
Sbjct: 13 LPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKT 72
Query: 180 LQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVK 239
LQ +G + +LI SK + P V Y++ + +T E++ E DIL++LK++ +
Sbjct: 73 LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLAT 132
Query: 240 TFL 242
FL
Sbjct: 133 DFL 135
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 122 LPDYVE--KVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQK 179
LP + ++Q +V+ + R +L+ W+ + E ++L L++S +DR+L ++
Sbjct: 34 LPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKT 93
Query: 180 LQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVK 239
LQ +G + +LI SK + P V Y++ + +T E++ E DIL++LK++ +
Sbjct: 94 LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLAT 153
Query: 240 TFL 242
FL
Sbjct: 154 DFL 156
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 67/119 (56%)
Query: 113 MEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL 172
+E++P+ Q+ ++++MR +L W+ V +EY L + + L ++ +DR L +
Sbjct: 26 LEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLI 85
Query: 173 NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKF 231
++++ Q G + +L+ASK ++P + CY +++++ E++ E ++L+ L +
Sbjct: 86 KQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAW 144
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 123 PDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQL 182
P +E + A R ++ +V L DTL I Y RF + + +
Sbjct: 26 PSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYV 85
Query: 183 LGVSSMLIASKYEEISPPNVED-------------FCYITDNTYTKDEVVKMEADILKSL 229
G + +A K EE +P +D F D+ K+EV+ +E +L+++
Sbjct: 86 TGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQFGQFGDDP--KEEVMVLERILLQTI 142
Query: 230 KFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASV 289
KF+L FL ++ + + D N +L + + SL +++ P +A +V
Sbjct: 143 KFDLQVEHPYQFLLKYAKQLKGDKNKIQ-KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 201
Query: 290 IFLARFITQPSKHPWTA 306
++LA + + WT+
Sbjct: 202 MYLAGRLCKFEIQEWTS 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,645,206
Number of Sequences: 62578
Number of extensions: 313556
Number of successful extensions: 829
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 32
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)