Query 017386
Match_columns 372
No_of_seqs 269 out of 1767
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0654 G2/Mitotic-specific cy 100.0 1.3E-53 2.9E-58 410.2 13.2 357 1-369 1-359 (359)
2 KOG0653 Cyclin B and related k 100.0 1.2E-42 2.6E-47 345.6 21.8 260 86-355 109-372 (391)
3 COG5024 Cyclin [Cell division 100.0 2.8E-42 6.1E-47 340.2 15.3 254 91-355 169-423 (440)
4 KOG0655 G1/S-specific cyclin E 100.0 1.2E-37 2.6E-42 290.0 19.5 218 101-330 111-335 (408)
5 KOG0656 G1/S-specific cyclin D 100.0 5E-35 1.1E-39 279.4 19.5 221 101-324 43-268 (335)
6 PF00134 Cyclin_N: Cyclin, N-t 99.9 3.6E-26 7.8E-31 192.2 10.5 127 105-234 1-127 (127)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.9 3.6E-22 7.9E-27 191.5 20.3 166 136-302 54-225 (305)
8 PF02984 Cyclin_C: Cyclin, C-t 99.8 9.2E-21 2E-25 156.8 10.9 118 236-359 1-118 (118)
9 KOG0834 CDK9 kinase-activating 99.8 1E-20 2.2E-25 181.4 12.0 205 126-332 27-247 (323)
10 KOG0835 Cyclin L [General func 99.8 1E-18 2.2E-23 163.8 17.7 194 131-332 16-231 (367)
11 KOG0794 CDK8 kinase-activating 99.8 1.1E-18 2.3E-23 156.5 9.2 187 139-333 42-241 (264)
12 COG5333 CCL1 Cdk activating ki 99.7 1.1E-16 2.5E-21 150.2 13.8 166 134-305 41-212 (297)
13 cd00043 CYCLIN Cyclin box fold 99.5 3.5E-14 7.7E-19 110.0 8.1 88 137-226 1-88 (88)
14 smart00385 CYCLIN domain prese 99.5 1.8E-13 4E-18 104.9 7.6 83 143-227 1-83 (83)
15 PRK00423 tfb transcription ini 99.5 8.4E-12 1.8E-16 121.0 20.9 182 139-330 123-304 (310)
16 KOG2496 Cdk activating kinase 99.3 5.3E-11 1.1E-15 111.4 15.8 155 139-294 57-219 (325)
17 KOG1597 Transcription initiati 98.7 4.3E-07 9.4E-12 85.2 15.8 175 144-328 110-286 (308)
18 COG1405 SUA7 Transcription ini 98.7 1.1E-06 2.5E-11 83.8 18.8 182 137-328 96-277 (285)
19 PF08613 Cyclin: Cyclin; Inte 98.7 1.1E-07 2.4E-12 82.6 9.1 91 141-233 54-149 (149)
20 smart00385 CYCLIN domain prese 98.6 3.1E-07 6.7E-12 69.9 7.9 81 240-327 1-82 (83)
21 cd00043 CYCLIN Cyclin box fold 98.4 1.5E-06 3.3E-11 66.7 9.2 85 235-326 2-87 (88)
22 KOG4164 Cyclin ik3-1/CABLES [C 97.8 1.8E-05 3.9E-10 76.9 4.1 100 136-236 381-482 (497)
23 KOG1598 Transcription initiati 97.2 0.008 1.7E-07 61.3 14.7 173 120-298 43-224 (521)
24 PF00382 TFIIB: Transcription 96.4 0.015 3.2E-07 43.7 6.7 65 145-210 1-65 (71)
25 KOG1674 Cyclin [General functi 95.8 0.027 5.9E-07 52.0 7.0 93 142-236 79-181 (218)
26 KOG1675 Predicted cyclin [Gene 95.3 0.033 7.1E-07 53.2 5.6 93 145-238 197-291 (343)
27 PRK00423 tfb transcription ini 94.1 0.35 7.5E-06 47.1 9.6 89 142-233 220-308 (310)
28 PF00382 TFIIB: Transcription 93.8 0.47 1E-05 35.4 7.9 58 260-319 14-71 (71)
29 PF02984 Cyclin_C: Cyclin, C-t 90.8 0.75 1.6E-05 37.1 6.1 87 142-230 4-90 (118)
30 KOG0834 CDK9 kinase-activating 87.0 0.74 1.6E-05 45.0 4.1 94 139-232 153-248 (323)
31 PF00134 Cyclin_N: Cyclin, N-t 80.2 16 0.00034 29.7 8.9 65 261-326 52-118 (127)
32 COG1405 SUA7 Transcription ini 78.7 4.9 0.00011 38.7 6.0 56 141-196 194-249 (285)
33 KOG0835 Cyclin L [General func 57.3 50 0.0011 32.4 7.7 65 159-225 161-225 (367)
34 PF01857 RB_B: Retinoblastoma- 41.4 83 0.0018 26.8 6.0 64 143-207 16-81 (135)
35 TIGR00569 ccl1 cyclin ccl1. Un 39.0 2.3E+02 0.0049 27.6 9.3 35 264-298 82-116 (305)
36 KOG1597 Transcription initiati 36.0 92 0.002 30.1 5.9 63 146-209 208-270 (308)
37 PF03261 CDK5_activator: Cycli 36.0 1.4E+02 0.003 29.6 7.1 104 139-247 222-338 (346)
38 PF08613 Cyclin: Cyclin; Inte 33.1 3.1E+02 0.0066 23.3 10.1 81 236-322 52-137 (149)
39 KOG0656 G1/S-specific cyclin D 32.0 2.6E+02 0.0057 27.6 8.5 51 261-311 99-152 (335)
40 cd04441 DEP_2_DEP6 DEP (Dishev 28.8 48 0.001 25.9 2.3 32 138-170 35-66 (85)
41 cd04443 DEP_GPR155 DEP (Dishev 24.3 67 0.0014 24.9 2.4 30 138-168 33-62 (83)
42 cd04439 DEP_1_P-Rex DEP (Dishe 23.5 61 0.0013 25.0 2.0 30 138-168 31-60 (81)
43 cd04438 DEP_dishevelled DEP (D 22.8 57 0.0012 25.3 1.7 39 138-176 32-70 (84)
44 cd04449 DEP_DEPDC5-like DEP (D 22.5 75 0.0016 24.4 2.4 33 138-170 32-64 (83)
45 cd04440 DEP_2_P-Rex DEP (Dishe 21.6 75 0.0016 25.3 2.2 31 137-168 39-69 (93)
46 cd04442 DEP_1_DEP6 DEP (Dishev 21.5 73 0.0016 24.7 2.1 30 138-168 31-60 (82)
No 1
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-53 Score=410.19 Aligned_cols=357 Identities=46% Similarity=0.750 Sum_probs=300.3
Q ss_pred CCcccchhhhhhHHHhHHhhcCCC-CCCCccccccccCCCCCCCccccccCCCCCcccchhhhhhHHhhhHHHHhhhhhc
Q 017386 1 MADQENFVRVTRAAAKKRAASGSA-SEQPAKKKRVVLGELPTNTNVVVSVNPSLKAEPRKAKAKAKKALLTEKTKAKAKT 79 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (372)
|..+.++.+.+++|.+++++.... ++.|...++++.|+++++++..... ....++..+.......-...+.... .-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~-~~~ 78 (359)
T KOG0654|consen 1 MEQKVAKPQNIFAADSKKANTSNVIDVEPIRQDYAVDGDLTALEELRSPP-KILSKQTNKSDLELLKLFSSEHKLS-LDE 78 (359)
T ss_pred ChhhhhcccCCccCchhhhcccccccCCCccchhhhhchhhhhhhhhccc-cccchhhhhhhhcccccccccchhh-hcc
Confidence 445667788888888887775554 5666789999999999885433211 1111111111000000000000000 000
Q ss_pred cCCC-CCCCCccCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhH
Q 017386 80 KATE-DADIDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDT 158 (372)
Q Consensus 80 ~~~~-~~~~~~~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~T 158 (372)
..+. ..+.+++....||++|..|+.+|++|++..|... .+|.++|++.+|.++|+.||+++|||+++|++.+++..++
T Consensus 79 ~~~~~~~~~~~ds~~~dp~~c~~~~~~I~~~~r~~ei~~-~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~ 157 (359)
T KOG0654|consen 79 ASAMDGFVMRIDSVGEDPQMCLKIAAKIYNTLRVSDIKS-ERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFET 157 (359)
T ss_pred cccccccccchhhcccchHHHHHHHHHHhhcccccchhh-ccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhh
Confidence 0011 1124678899999999999999999999999653 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcch
Q 017386 159 LYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTV 238 (372)
Q Consensus 159 l~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp 238 (372)
||+++++.|||++...+.++++|++|.+|++||+|+||+.+|.+++|+++++++|+..++..||..||+.|.|++..||.
T Consensus 158 l~ls~~~~drfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~ 237 (359)
T KOG0654|consen 158 LYLSVNYRDRFLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTS 237 (359)
T ss_pred eeecHHHHHHHhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhh
Q 017386 239 KTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSE 318 (372)
Q Consensus 239 ~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~ 318 (372)
..|++.|+..++. ...+++.++.||.|++++|+.|++|.||+||+||++||+.+++ .++|++.|+++|||+.+|
T Consensus 238 ~~~l~~~~~~~~~----~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~--~~pW~~~L~~~T~y~~ed 311 (359)
T KOG0654|consen 238 KTFLRRFLRVAQT----PELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLD--FHPWNQTLEDYTGYKAED 311 (359)
T ss_pred HHHHHHHHHhhcc----hhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhcc--CCCCchhhHHhhcccHHH
Confidence 9999999888765 5667889999999999999999999999999999999999998 799999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHhhCCCccCcccccCCCCCCChhhhcc
Q 017386 319 IEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPSCYFED 369 (372)
Q Consensus 319 l~~c~~~l~~l~~~~~~~~~~av~~KY~~~~~~~Va~~~~~~~~p~~~~~~ 369 (372)
++.|+..|+ ++++.++..+++|++||++++|++||.+++| +|..||++
T Consensus 312 l~~~v~~L~-~~l~~~~~~l~air~ky~~~k~~~Va~~~~p--~p~~~~~~ 359 (359)
T KOG0654|consen 312 LKPCVLDLH-LYLNASGTDLPAIREKYKQSKFKEVALLPVP--LPHTFVES 359 (359)
T ss_pred HHHHHHHHh-cccCCCCCchHHHHHHhhhhhhhhhhccCCC--CcchhccC
Confidence 999999999 9999999999999999999999999999888 89998863
No 2
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-42 Score=345.57 Aligned_cols=260 Identities=43% Similarity=0.681 Sum_probs=230.9
Q ss_pred CCCcc-CCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 017386 86 DIDID-ARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTIS 164 (372)
Q Consensus 86 ~~~~~-~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~ 164 (372)
..|++ .+..+++++.+|.+|||.|++..|. ...|...+ ..|++++..||.+++|||++||..|+|.+||+|+||+
T Consensus 109 ~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~--~~~p~~~~--~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVn 184 (391)
T KOG0653|consen 109 ILDLDSEDKSDPSMIVEYVQDIFEYLRQLEL--EFLPLSYD--ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVN 184 (391)
T ss_pred ccCcchhcccCcHHHHHHHHHHHHHHHHHHH--hhCchhhh--cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHH
Confidence 34444 6778899999999999999999984 33454444 4489999999999999999999999999999999999
Q ss_pred HHHHhhccccccchhHHHHHHHHHH-HHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHH
Q 017386 165 YIDRFLSLNVLNRQKLQLLGVSSML-IASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLR 243 (372)
Q Consensus 165 llDRfls~~~v~~~~lqLva~tcL~-IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~ 243 (372)
++||||+...|++.++||+|++||+ ||+|+||..+|.+.||++++++.|+.++|++||+.||++|+|+++.|||+.||+
T Consensus 185 liDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLr 264 (391)
T KOG0653|consen 185 LIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLR 264 (391)
T ss_pred HHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHH
Confidence 9999999999999999999999966 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHH
Q 017386 244 RFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCV 323 (372)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~ 323 (372)
+|++....+ .....++.|++|++++|+.++.++||.+|+|++++++.+...+ ..|...+..++||...++.+|.
T Consensus 265 r~~ka~~~d-----~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~-~~w~~~~~~~sg~~~~~~~~~~ 338 (391)
T KOG0653|consen 265 RFLKAADYD-----IKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKG-DVWSPTLEHYSGYSESYLFECA 338 (391)
T ss_pred HHHHhhhcc-----hhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccC-CccCCCCeeccCCCcHHHHHHH
Confidence 999987733 3345689999999999999999999999999999999998742 2699999999999999999999
Q ss_pred HHHHHHHhhcC-CCChhH-HHHhhCCCccCcccc
Q 017386 324 LILHDLYLSRR-GGNLQA-VREKYKQHKFKCVAT 355 (372)
Q Consensus 324 ~~l~~l~~~~~-~~~~~a-v~~KY~~~~~~~Va~ 355 (372)
..+..+..... +....+ ++.||.+.+|..++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~ 372 (391)
T KOG0653|consen 339 RSLSALSLSSLQNPSLRASVLNKYNSSKFLPASP 372 (391)
T ss_pred HHHHHHHHHhcccchhHHHHHHHhcccccchhhh
Confidence 99988554443 335554 999999999988884
No 3
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-42 Score=340.16 Aligned_cols=254 Identities=33% Similarity=0.607 Sum_probs=233.1
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Q 017386 91 ARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFL 170 (372)
Q Consensus 91 ~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfl 170 (372)
...+||.++.||++||+.|++.+|. ...|.+.||.+ |+.+...||.+|++||++||..|++.++|+++||+++||||
T Consensus 169 ~~~~d~~mv~Ey~~~Ife~l~k~e~--~~lp~~~yl~k-q~~~~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfL 245 (440)
T COG5024 169 TDQEDPLMVPEYASDIFEYLLKLEL--IDLPNPNYLIK-QSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFL 245 (440)
T ss_pred ccccCccchHHHHHHHHHHHHHHHH--HhcCcHHHHhh-cchhHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHh
Confidence 5668999999999999999999994 56788999776 88999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHh
Q 017386 171 SLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQ 250 (372)
Q Consensus 171 s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~ 250 (372)
+...+.-+++||+|++||||||||||+.+|.+.+|++++++.|+.++|+++|+.+|..|+|+++.|+|..|++++.+.-.
T Consensus 246 s~~~v~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sFLRriSka~d 325 (440)
T COG5024 246 SSRVVSLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASD 325 (440)
T ss_pred ccCcccHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhhhcccccCCCChHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC-CChhhHHHHHHHHHHH
Q 017386 251 EDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG-YKPSEIEGCVLILHDL 329 (372)
Q Consensus 251 ~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg-~~~~~l~~c~~~l~~l 329 (372)
.+ .+...++.|+++.+++++.|.+++||.+|+||.++++.+++. ..|...|..++| |+..++.++...+.+.
T Consensus 326 yd-----~~srt~~k~~~e~s~~~~~f~~~~~S~~~aaa~~~s~~~~~~--~~w~~~l~~ySg~y~~~~l~~~~~~~~~~ 398 (440)
T COG5024 326 YD-----IFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQ--NQWDRTLIHYSGNYTNPDLKPLNESNKEN 398 (440)
T ss_pred cc-----hhhhhhHhhhCCchHhhhhhccCCchHHHHHHHHHHHhhhcc--CCCCccccccCCCCCchhHHHHHHHHHHH
Confidence 33 233458999999999999999999999999999999999985 449999999999 9999999999999888
Q ss_pred HhhcCCCChhHHHHhhCCCccCcccc
Q 017386 330 YLSRRGGNLQAVREKYKQHKFKCVAT 355 (372)
Q Consensus 330 ~~~~~~~~~~av~~KY~~~~~~~Va~ 355 (372)
+.+.. ..+.+++.||+..+|+.++.
T Consensus 399 l~~~~-~~~~~i~~Ky~~~~~~~~s~ 423 (440)
T COG5024 399 LQNPS-VHHDAIFPKYPSPTFGKASS 423 (440)
T ss_pred hcccc-hhhhhhhhccccccccccch
Confidence 76543 34489999999999987664
No 4
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-37 Score=290.03 Aligned_cols=218 Identities=31% Similarity=0.533 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhc-cccccchh
Q 017386 101 AYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLS-LNVLNRQK 179 (372)
Q Consensus 101 ~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls-~~~v~~~~ 179 (372)
.-..+++..+...| ..+.-...++.. ++++.|+||++|+|||+|||+.|+|.++||||||-||||||. .+.+.+.+
T Consensus 111 gn~~eVW~lM~kke--e~~l~~~~~l~q-Hpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~kt~ 187 (408)
T KOG0655|consen 111 GNSKEVWLLMLKKE--ERYLRDKHFLEQ-HPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSKTN 187 (408)
T ss_pred cCHHHHHHHHHccc--hhhhhhhHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44588999988877 445555566654 899999999999999999999999999999999999999995 57899999
Q ss_pred HHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccch----
Q 017386 180 LQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNA---- 255 (372)
Q Consensus 180 lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~---- 255 (372)
|||||+||||||+|+||++||.+.+|.+++|+.|+.++|+.||..||+.|+|+|+..|...||..|++....+...
T Consensus 188 lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~ 267 (408)
T KOG0655|consen 188 LQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLL 267 (408)
T ss_pred HHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876443321
Q ss_pred h-hHHHHHH-HHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 256 S-NLQLEFL-GYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 256 ~-~~~~~~l-a~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
+ ..+.+++ ...|++++++|..++.|+-+.||||+++.-.. ...+++.+|+.+.++.+|++.|.-+.
T Consensus 268 Pq~~~~efiqiaqlLDlc~ldids~~fsYrilaAAal~h~~s---------~e~v~kaSG~~w~~ie~cv~wm~Pf~ 335 (408)
T KOG0655|consen 268 PQYSQEEFIQIAQLLDLCILDIDSLEFSYRILAAAALCHFTS---------IEVVKKASGLEWDSIEECVDWMVPFV 335 (408)
T ss_pred cccchHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhH---------HHHHHHcccccHHHHHHHHHHHHHHH
Confidence 0 0111222 34688999999999999999999999986432 45678999999999999999986544
No 5
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5e-35 Score=279.42 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchh-
Q 017386 101 AYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQK- 179 (372)
Q Consensus 101 ~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~- 179 (372)
-+.+++...+...| ..+.|..+|...+|..+++.||.+.++||.+|+.++++.++|++|||+|||||++...+++.+
T Consensus 43 ~~~e~~i~~ll~kE--e~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~ 120 (335)
T KOG0656|consen 43 LWDERVLANLLEKE--EQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKP 120 (335)
T ss_pred cccHHHHHHHHHHH--HHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCch
Confidence 34566666666666 467788888888999999999999999999999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHhhhccCCCCchhhh-hccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchh
Q 017386 180 --LQLLGVSSMLIASKYEEISPPNVEDF-CYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNAS 256 (372)
Q Consensus 180 --lqLva~tcL~IAsK~eE~~~p~i~~l-~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~ 256 (372)
+||+|++||+||||+||...|.+.|+ +..+++.|.++.|.+||..||.+|+|++..+||++|+++|+..+.......
T Consensus 121 W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~ 200 (335)
T KOG0656|consen 121 WMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNK 200 (335)
T ss_pred HHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchH
Confidence 99999999999999999988888777 467899999999999999999999999999999999999998876653222
Q ss_pred hHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCC-CCCcHHHHHHHhCCChhhHHHHHH
Q 017386 257 NLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPS-KHPWTASLQQYSGYKPSEIEGCVL 324 (372)
Q Consensus 257 ~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~-~~~w~~~L~~~tg~~~~~l~~c~~ 324 (372)
. .+..-+.-++-.+..|..|+.|+||+||+|++.++...+++- .......+..+.+.+.+.+..|..
T Consensus 201 ~-~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~~~~ 268 (335)
T KOG0656|consen 201 H-LFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNRCYD 268 (335)
T ss_pred H-HHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhcchh
Confidence 2 223334444446678999999999999999998877766531 122235666677777777777877
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.93 E-value=3.6e-26 Score=192.25 Aligned_cols=127 Identities=43% Similarity=0.824 Sum_probs=113.8
Q ss_pred HHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHH
Q 017386 105 DIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLG 184 (372)
Q Consensus 105 dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva 184 (372)
||+.+++..|. +..+.++|++. |++++..+|..+++||.+++..+++++.|+++|+.|+|||+...++.+.+++++|
T Consensus 1 ~i~~~~~~~e~--~~~~~~~~~~~-~~~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~~li~ 77 (127)
T PF00134_consen 1 DIFRYLLEKEL--KYKPNPDYLEQ-QPEITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKLQLIA 77 (127)
T ss_dssp HHHHHHHHHHH--HTTCCTTHGTG-TSSHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGHHHHH
T ss_pred CHHHHHHHHHH--HHCcCcccccc-ChhcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchhhhhh
Confidence 79999999984 44677899974 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCccc
Q 017386 185 VSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELG 234 (372)
Q Consensus 185 ~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~ 234 (372)
+|||+||+|++|..+|.+.+++.++++.|+.++|.+||+.||+.|+|+++
T Consensus 78 ~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 78 LACLFLASKMEEDNPPSISDLIRISDNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHHHHHHHHHHHHHTTT---
T ss_pred hhHHHHhhhhhccccchHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999999999999999985
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.90 E-value=3.6e-22 Score=191.47 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCc-
Q 017386 136 NMRGVLVDWLVEVAEEYK--LVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNT- 212 (372)
Q Consensus 136 ~~R~~lvdWl~ev~~~~~--l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~- 212 (372)
..|..-+.+|.+++..++ |+++|+.+|+.||+||+..+++...+.++||+||||||||+||.. .++.+++......
T Consensus 54 ~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE~~-~si~~fv~~~~~~~ 132 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFN-VSIDQFVGNLKETP 132 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccccC-cCHHHHHhhccCCc
Confidence 678888899999999999 999999999999999999999999999999999999999999975 5789998755443
Q ss_pred -cChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHH
Q 017386 213 -YTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDY--NASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASV 289 (372)
Q Consensus 213 -~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~--~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAa 289 (372)
...++|++||..||+.|+|++.+++|+.++..|+..++... ......+...++.++..++++..++.|.||.||+||
T Consensus 133 ~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~~l~~~~~~~~l~q~a~~~lndsl~Td~~L~y~Ps~IAlAA 212 (305)
T TIGR00569 133 LKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLNRTLLTDAYLLYTPSQIALAA 212 (305)
T ss_pred hhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCceecCCHHHHHHHH
Confidence 36799999999999999999999999999999886443211 011123445666676767777779999999999999
Q ss_pred HHHHHHHhCCCCC
Q 017386 290 IFLARFITQPSKH 302 (372)
Q Consensus 290 i~lA~~~l~~~~~ 302 (372)
|++|...++.+.+
T Consensus 213 I~lA~~~~~~~l~ 225 (305)
T TIGR00569 213 ILHTASRAGLNME 225 (305)
T ss_pred HHHHHHHhCCCCc
Confidence 9999999885443
No 8
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=99.84 E-value=9.2e-21 Score=156.82 Aligned_cols=118 Identities=37% Similarity=0.717 Sum_probs=101.2
Q ss_pred cchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCC
Q 017386 236 PTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYK 315 (372)
Q Consensus 236 pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~ 315 (372)
|||++||++|++..+. ...+..+++||+|++++|+.|++|+||+||+||+++|+.+++. .+.|...+..++||+
T Consensus 1 PTp~~Fl~~~~~~~~~-----~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~-~~~~~~~l~~~t~~~ 74 (118)
T PF02984_consen 1 PTPYDFLRRFLKISNA-----DQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGK-EPPWPESLEKLTGYD 74 (118)
T ss_dssp --HHHHHHHHHTSSSH-----HHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHS-STCSHHHHHHHHTS-
T ss_pred CcHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCc-cccCCccchhhcCCC
Confidence 8999999999664322 3346789999999999999999999999999999999999873 369999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCChhHHHHhhCCCccCcccccCCC
Q 017386 316 PSEIEGCVLILHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSS 359 (372)
Q Consensus 316 ~~~l~~c~~~l~~l~~~~~~~~~~av~~KY~~~~~~~Va~~~~~ 359 (372)
.+++.+|+..|.+++.......+.++++||++++|++||++++|
T Consensus 75 ~~~l~~c~~~i~~~~~~~~~~~~~ai~~Kys~~~~~~vs~~~~~ 118 (118)
T PF02984_consen 75 KEDLKECIELIQELLSKASNSKLQAIRKKYSSQKFSSVSQIPPP 118 (118)
T ss_dssp HHHHHHHHHHHHHHHHHCCGSSCTHHHHHTTSGGGTTGGGSS--
T ss_pred HHHHHHHHHHHHHHHHhcCCccchHHHHHhCccccCCccCCCCC
Confidence 99999999999999987766889999999999999999999776
No 9
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1e-20 Score=181.39 Aligned_cols=205 Identities=19% Similarity=0.269 Sum_probs=168.5
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhh
Q 017386 126 VEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDF 205 (372)
Q Consensus 126 l~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l 205 (372)
+.+.+..--...|.....||.+++..++++..|+..|+.|++||+..+++...+...+|++|||||+|+||. |-.++|+
T Consensus 27 ~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~sclfLAgKvEet-p~kl~dI 105 (323)
T KOG0834|consen 27 RDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAASCLFLAGKVEET-PRKLEDI 105 (323)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHHHHHHHhhcccC-cccHHHH
Confidence 333333444578999999999999999999999999999999999999999999999999999999999884 6788888
Q ss_pred hccccCccC-------------hHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHh
Q 017386 206 CYITDNTYT-------------KDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSL 272 (372)
Q Consensus 206 ~~~~~~~~t-------------~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl 272 (372)
+..+...+. ++.|+..|..||++|+||+++-.|+.||..|++.+..+.+.. ..+..+|++++..++
T Consensus 106 i~~s~~~~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~~~-~~~a~~Aw~~~nD~~ 184 (323)
T KOG0834|consen 106 IKVSYRYLNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADENLK-QPLAQAAWNFVNDSL 184 (323)
T ss_pred HHHHHHHcCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhhcc-ccHHHHHHHHhchhh
Confidence 765433222 578999999999999999999999999999998877655321 235678999999999
Q ss_pred cchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHH-HHHHhC--CChhhHHHHHHHHHHHHhh
Q 017386 273 LDYACVKFLPSSVAASVIFLARFITQPSKHPWTAS-LQQYSG--YKPSEIEGCVLILHDLYLS 332 (372)
Q Consensus 273 ~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~-L~~~tg--~~~~~l~~c~~~l~~l~~~ 332 (372)
...-+++|+|.+||+|||++|....+...+.|... --...+ .+.+++.+.+..+.++|..
T Consensus 185 ~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~~~~l~~y~~ 247 (323)
T KOG0834|consen 185 RTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDICHEFLDLYEQ 247 (323)
T ss_pred eeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987544433332 112235 7888999999999998854
No 10
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=99.81 E-value=1e-18 Score=163.82 Aligned_cols=194 Identities=21% Similarity=0.272 Sum_probs=164.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc
Q 017386 131 KDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD 210 (372)
Q Consensus 131 ~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~ 210 (372)
.+-..+.|-.-+.||.+.+.-++|++.+.+.+..||-||+...++-+.++..++++|++||||+||. |-.+.|++.+..
T Consensus 16 ~e~e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~-Prr~rdVinVFh 94 (367)
T KOG0835|consen 16 LETEEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEE-PRRIRDVINVFH 94 (367)
T ss_pred cchHHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccc-cccHhHHHHHHH
Confidence 3445688999999999999999999999999999999999999999999999999999999999884 556666543322
Q ss_pred C-------------------ccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Q 017386 211 N-------------------TYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELS 271 (372)
Q Consensus 211 ~-------------------~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~els 271 (372)
. .-.+..++++|..||+.|+|++++-.|+-++-.|++.++...+ ..+...+|.++..+
T Consensus 95 ~L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~---~~l~Q~~wNfmNDs 171 (367)
T KOG0835|consen 95 YLEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPN---LKLLQAAWNFMNDS 171 (367)
T ss_pred HHHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCc---hhHHHHHHHhhhhc
Confidence 1 0124578999999999999999999999999999998876543 34567899999999
Q ss_pred hcchhccCCcHHHHHHHHHHHHHHHhC---CCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhh
Q 017386 272 LLDYACVKFLPSSVAASVIFLARFITQ---PSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLS 332 (372)
Q Consensus 272 l~d~~~~~~~PS~iAaAai~lA~~~l~---~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~ 332 (372)
+...-|+.|+|+.||||||+||...++ |..+.|. .+.+.+..++.+..-.+..+|.-
T Consensus 172 lRT~v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf----~~Fd~~k~eid~ic~~l~~lY~~ 231 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIYLAARNLEIPLPFQPHWF----KAFDTTKREIDEICYRLIPLYKR 231 (367)
T ss_pred cccceeeecCHHHHHHHHHHHHHhhhcCCCCCCccHH----HHcCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988 5566776 45588888888877777777755
No 11
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=99.77 E-value=1.1e-18 Score=156.51 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcc----------
Q 017386 139 GVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYI---------- 208 (372)
Q Consensus 139 ~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~---------- 208 (372)
--.-+.|..+++++++.+.++..|+.||-||+.+.++..-++.|++.||+++|||+||.....++.++..
T Consensus 42 i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~ 121 (264)
T KOG0794|consen 42 IFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSY 121 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhccc
Confidence 3345668899999999999999999999999999999999999999999999999999753333333221
Q ss_pred c--cCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHH
Q 017386 209 T--DNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVA 286 (372)
Q Consensus 209 ~--~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iA 286 (372)
. ...|...+|.+||..+|..|++-|-+-.|+.=|..+++.++... .....+++.+...|+...-++-|+|..||
T Consensus 122 ~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~d----~~~l~~~W~ivNDSyr~Dl~Ll~PPh~Ia 197 (264)
T KOG0794|consen 122 WPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGIND----QKLLQLAWSIVNDSYRMDLCLLYPPHQIA 197 (264)
T ss_pred chhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhcccc----hhhhhhhHhhhcchhhcceeeecCHHHHH
Confidence 1 12577889999999999999999999999999988887665421 12446899999999988888999999999
Q ss_pred HHHHHHHHHHhCCCC-CCcHHHHHHHhCCChhhHHHHHHHHHHHHhhc
Q 017386 287 ASVIFLARFITQPSK-HPWTASLQQYSGYKPSEIEGCVLILHDLYLSR 333 (372)
Q Consensus 287 aAai~lA~~~l~~~~-~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~ 333 (372)
.|||++|..+.+.+. ..|...+ ..+.+.+.+|++.|.++|-.-
T Consensus 198 lAcl~Ia~~~~~k~~~~~w~~el----~vD~ekV~~~v~~I~~lYe~w 241 (264)
T KOG0794|consen 198 LACLYIACVIDEKDIPKAWFAEL----SVDMEKVKDIVQEILKLYELW 241 (264)
T ss_pred HHHHHHHHhhcCCChHHHHHHHH----hccHHHHHHHHHHHHHHHHHH
Confidence 999999999887554 4565444 788999999999999998654
No 12
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.71 E-value=1.1e-16 Score=150.17 Aligned_cols=166 Identities=16% Similarity=0.271 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc---
Q 017386 134 SANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD--- 210 (372)
Q Consensus 134 t~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~--- 210 (372)
+.+.|-.-..|+..+|..++++..++.+||.+++||+.+.++....++-++.||+++|+|+||. +-.+.-.+....
T Consensus 41 e~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~~~vv~tcv~LA~K~ed~-~~~I~i~~~~~~~~~ 119 (297)
T COG5333 41 ELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACKVEDT-PRDISIESFEARDLW 119 (297)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccHHHHHHhheeeeeecccc-cchhhHHHHHhhccc
Confidence 4467777889999999999999999999999999999999999999999999999999999995 333333333222
Q ss_pred ---CccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHH
Q 017386 211 ---NTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAA 287 (372)
Q Consensus 211 ---~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAa 287 (372)
..-+++.|.++|..||+.|+||+.+..|+..+..|+..++.... -....++|-++..++...-++.|+|+.||+
T Consensus 120 se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~---~~~~~~aw~~inDa~~t~~~llypphiIA~ 196 (297)
T COG5333 120 SEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDK---YKLLQIAWKIINDALRTDLCLLYPPHIIAL 196 (297)
T ss_pred cccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccH---HHHHHHHHHHHHhhhhceeeeecChHHHHH
Confidence 24578999999999999999999999999999999988766543 235568999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcH
Q 017386 288 SVIFLARFITQPSKHPWT 305 (372)
Q Consensus 288 Aai~lA~~~l~~~~~~w~ 305 (372)
||+..|...++ .+.|.
T Consensus 197 a~l~ia~~~~~--~~~~~ 212 (297)
T COG5333 197 AALLIACEVLG--MPIIK 212 (297)
T ss_pred HHHHHHHHhcC--Cccch
Confidence 99999999987 34454
No 13
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.52 E-value=3.5e-14 Score=110.00 Aligned_cols=88 Identities=33% Similarity=0.522 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChH
Q 017386 137 MRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKD 216 (372)
Q Consensus 137 ~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~ 216 (372)
+|...++||.+++..++++++|.++|+.++|||+....+.+.+++++|++|++||+|+++. ++...++..+++.. +.+
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~-~~~ 78 (88)
T cd00043 1 MRPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYA-TEE 78 (88)
T ss_pred CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCC-CHH
Confidence 3678999999999999999999999999999999999999999999999999999999998 89999999887654 899
Q ss_pred HHHHHHHHHH
Q 017386 217 EVVKMEADIL 226 (372)
Q Consensus 217 ~i~~mE~~IL 226 (372)
+|.+||..||
T Consensus 79 ~i~~~e~~il 88 (88)
T cd00043 79 EILRMEKLLL 88 (88)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 14
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.46 E-value=1.8e-13 Score=104.91 Aligned_cols=83 Identities=30% Similarity=0.502 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHH
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKME 222 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE 222 (372)
+||.+++..+++++++.++|+.++|||+....+.+.+++++|++|++||+|++|.. +...++..+++. ++.++|.+||
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~-~~~~~i~~~~ 78 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGY-FTEEEILRME 78 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCC-CCHHHHHHHH
Confidence 59999999999999999999999999999878888999999999999999999876 677888887776 7999999999
Q ss_pred HHHHH
Q 017386 223 ADILK 227 (372)
Q Consensus 223 ~~IL~ 227 (372)
+.||.
T Consensus 79 ~~il~ 83 (83)
T smart00385 79 KLLLE 83 (83)
T ss_pred HHHhC
Confidence 99974
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=99.46 E-value=8.4e-12 Score=121.00 Aligned_cols=182 Identities=10% Similarity=0.121 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHH
Q 017386 139 GVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEV 218 (372)
Q Consensus 139 ~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i 218 (372)
.....-|-+++..++|+..+.-.|..++.+++....+.......++++|+|+|||.++ .|-++.+++.+++ .+..+|
T Consensus 123 ~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~-~prtl~eI~~~~~--v~~k~i 199 (310)
T PRK00423 123 AFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCK-VPRTLDEIAEVSR--VSRKEI 199 (310)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcC-CCcCHHHHHHHhC--CCHHHH
Confidence 4456678999999999999999999999999999888888999999999999999965 5678999988775 678999
Q ss_pred HHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhC
Q 017386 219 VKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQ 298 (372)
Q Consensus 219 ~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~ 298 (372)
-+.++.|++.|++++....|.+|+.+|...++... .+...+.+++..+.-..-....+|..||+||||+|....+
T Consensus 200 ~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~-----~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g 274 (310)
T PRK00423 200 GRCYRFLLRELNLKLPPTDPIDYVPRFASELGLSG-----EVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLG 274 (310)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998876543 3455778888766544444689999999999999998876
Q ss_pred CCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 299 PSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 299 ~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
. +.-...+...+|.+...+...+..|...+
T Consensus 275 ~--~~t~keIa~v~~Vs~~tI~~~ykel~~~l 304 (310)
T PRK00423 275 E--RRTQREVAEVAGVTEVTVRNRYKELAEKL 304 (310)
T ss_pred C--CCCHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3 44567889999999999999998887643
No 16
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=99.32 E-value=5.3e-11 Score=111.39 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc--CccC
Q 017386 139 GVLVDWLVEVAEEY--KLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD--NTYT 214 (372)
Q Consensus 139 ~~lvdWl~ev~~~~--~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~--~~~t 214 (372)
.....-+++.+..| .++..++..|+.+|-||+...++..-+.+.|.+||+|+|+|++|. ..++++|+.-.. ..-+
T Consensus 57 k~~E~~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~pk~I~~tc~flA~Kieef-~ISieqFvkn~~~~~~k~ 135 (325)
T KOG2496|consen 57 KEEELSLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSPKIIMATCFFLACKIEEF-YISIEQFVKNMNGRKWKT 135 (325)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHhhhHhh-eecHHHHHhhccCccccc
Confidence 34444566677776 578999999999999999999999999999999999999999885 578999986433 2457
Q ss_pred hHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhccc---chhhHH-HHHHHHHHHHHHhcchhccCCcHHHHHHHHH
Q 017386 215 KDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDY---NASNLQ-LEFLGYYLAELSLLDYACVKFLPSSVAASVI 290 (372)
Q Consensus 215 ~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~---~~~~~~-~~~la~yl~elsl~d~~~~~~~PS~iAaAai 290 (372)
.+.|+..|..+|+.|+|++.+-+|+.=++-|+..+..-. .+.... ......-+++-+++...++-|.||.||.|+|
T Consensus 136 ~e~vLk~E~~llqsL~f~L~vh~PyRPleGFl~D~kt~l~~~~n~d~~~~~~d~~~fl~~~lltDa~lLytPsQIALaAi 215 (325)
T KOG2496|consen 136 HEIVLKYEFLLLQSLKFSLTVHNPYRPLEGFLLDMKTRLPALENPDILRKHDDSKKFLDRALLTDAYLLYTPSQIALAAI 215 (325)
T ss_pred HHHHHhchHHHHHhhhhhheecCCCCchHHHHHHHHHHHHhccCHHHHhhhhhHHHHHHHHHHhccceecChHHHHHHHH
Confidence 899999999999999999999999999988875443321 111111 1112234455566666778899999999999
Q ss_pred HHHH
Q 017386 291 FLAR 294 (372)
Q Consensus 291 ~lA~ 294 (372)
.-|-
T Consensus 216 l~a~ 219 (325)
T KOG2496|consen 216 LHAA 219 (325)
T ss_pred HHHh
Confidence 5553
No 17
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=98.74 E-value=4.3e-07 Score=85.17 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=143.7
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHH
Q 017386 144 WLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEA 223 (372)
Q Consensus 144 Wl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~ 223 (372)
-|..+++..+|+....-.|-.+|-++-..+.......+-++++||+|||.-++ .|-++.+++.++. .+++||-+.=.
T Consensus 110 ~I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~-~pRT~kEI~~~an--v~kKEIgr~~K 186 (308)
T KOG1597|consen 110 EITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQED-VPRTFKEISAVAN--VSKKEIGRCVK 186 (308)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcC-CCchHHHHHHHHc--CCHHHHHHHHH
Confidence 37788999999999999999999999988888889999999999999999865 5788999998877 78999999999
Q ss_pred HHHHHcCCcccCcc--hhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCC
Q 017386 224 DILKSLKFELGSPT--VKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSK 301 (372)
Q Consensus 224 ~IL~~L~f~l~~pT--p~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~ 301 (372)
.|+..|+-.+...| ..+|+.+|...+.... +....+.++.+-+---.....-.|-.||||+||++....+ .
T Consensus 187 ~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~-----~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~--~ 259 (308)
T KOG1597|consen 187 LIGEALETSVDLISISTGDFMPRFCSNLGLPK-----SAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSD--E 259 (308)
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhcc--C
Confidence 99999998877666 8899999998776543 2344666666654332222347899999999999998776 4
Q ss_pred CCcHHHHHHHhCCChhhHHHHHHHHHH
Q 017386 302 HPWTASLQQYSGYKPSEIEGCVLILHD 328 (372)
Q Consensus 302 ~~w~~~L~~~tg~~~~~l~~c~~~l~~ 328 (372)
......+.+.+|..+.-++.-+..|+.
T Consensus 260 kkt~keI~~vtgVaE~TIr~sYK~Lyp 286 (308)
T KOG1597|consen 260 KKTQKEIGEVTGVAEVTIRNSYKDLYP 286 (308)
T ss_pred cccHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 566788999999999999988886654
No 18
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=98.73 E-value=1.1e-06 Score=83.80 Aligned_cols=182 Identities=12% Similarity=0.143 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChH
Q 017386 137 MRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKD 216 (372)
Q Consensus 137 ~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~ 216 (372)
.-.....-|-.++..++++..+.-.|..++-+.+...-+.....+-++++|+++||+... .|-++.++....+ .++.
T Consensus 96 nl~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~-~prtl~eIa~a~~--V~~k 172 (285)
T COG1405 96 NLITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRING-VPRTLDEIAKALG--VSKK 172 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHC--CCHH
Confidence 445567778899999999999999999999999999999999999999999999999955 4778888887776 6789
Q ss_pred HHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHH
Q 017386 217 EVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFI 296 (372)
Q Consensus 217 ~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~ 296 (372)
+|.++.+.+.+.|+=.+....|.+|+.+|...++-+. .+...+..|+..+.-.-....-.|+-+|+||||+|..+
T Consensus 173 ei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~~-----~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l 247 (285)
T COG1405 173 EIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLSD-----EVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLL 247 (285)
T ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHH
Confidence 9999999999999999998999999999998876653 23456777777776655556889999999999999998
Q ss_pred hCCCCCCcHHHHHHHhCCChhhHHHHHHHHHH
Q 017386 297 TQPSKHPWTASLQQYSGYKPSEIEGCVLILHD 328 (372)
Q Consensus 297 l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~ 328 (372)
.+ ...-......++|.++.-++.=+..|.+
T Consensus 248 ~~--~~~tq~eva~v~~vtevTIrnrykel~~ 277 (285)
T COG1405 248 LG--ERRTQKEVAKVAGVTEVTIRNRYKELAD 277 (285)
T ss_pred hC--CchHHHHHHHHhCCeeeHHHHHHHHHHH
Confidence 87 4566778899999999988887766655
No 19
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=98.66 E-value=1.1e-07 Score=82.56 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhc---c--ccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccCh
Q 017386 141 LVDWLVEVAEEYKLVSDTLYLTISYIDRFLS---L--NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTK 215 (372)
Q Consensus 141 lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls---~--~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~ 215 (372)
+.+|+.++....+++++++-+|..|+||+.. . ..+.....+-+-++|+.||+|+-+.....-..+..+++ ++.
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~g--is~ 131 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGG--ISL 131 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT--S-H
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcC--CCH
Confidence 7889999999999999999999999999998 2 24677789999999999999998877777888888875 789
Q ss_pred HHHHHHHHHHHHHcCCcc
Q 017386 216 DEVVKMEADILKSLKFEL 233 (372)
Q Consensus 216 ~~i~~mE~~IL~~L~f~l 233 (372)
+++.+||+..|..|+|+|
T Consensus 132 ~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 132 KELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHCCCcC
Confidence 999999999999999986
No 20
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.56 E-value=3.1e-07 Score=69.92 Aligned_cols=81 Identities=33% Similarity=0.490 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC-Chhh
Q 017386 240 TFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGY-KPSE 318 (372)
Q Consensus 240 ~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~-~~~~ 318 (372)
+|+..+....+.+. .+..++.++++.++.++.+.+++|+.+|+||+++|.+..+. ++|...+..++|+ +.++
T Consensus 1 ~~l~~~~~~~~~~~-----~~~~~a~~~~~~~l~~~~~~~~~~~~ia~a~l~lA~k~~~~--~~~~~~~~~~~~~~~~~~ 73 (83)
T smart00385 1 DFLRRVCKALNLDP-----ETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLAAKTEEI--PPWTKELVHYTGYFTEEE 73 (83)
T ss_pred CHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcC--CCCchhHhHhhCCCCHHH
Confidence 36677766655432 35679999999999988999999999999999999999874 5799999999999 9999
Q ss_pred HHHHHHHHH
Q 017386 319 IEGCVLILH 327 (372)
Q Consensus 319 l~~c~~~l~ 327 (372)
+.+|...|.
T Consensus 74 i~~~~~~il 82 (83)
T smart00385 74 ILRMEKLLL 82 (83)
T ss_pred HHHHHHHHh
Confidence 999988764
No 21
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.44 E-value=1.5e-06 Score=66.70 Aligned_cols=85 Identities=32% Similarity=0.434 Sum_probs=73.5
Q ss_pred CcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 017386 235 SPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGY 314 (372)
Q Consensus 235 ~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~ 314 (372)
.|++.+|+..+....+.+. ....++.++++.++....+..+.|+.+|+||+++|.+..+. +.|...+...+|+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~ia~a~l~lA~k~~~~--~~~~~~~~~~~~~ 74 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSP-----ETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEI--PPWLKDLVHVTGY 74 (88)
T ss_pred cchHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHcCC--CCCHHHHhHHhCC
Confidence 5789999999988775433 34568999999999998899999999999999999998874 8999999999999
Q ss_pred -ChhhHHHHHHHH
Q 017386 315 -KPSEIEGCVLIL 326 (372)
Q Consensus 315 -~~~~l~~c~~~l 326 (372)
+.+++..+...|
T Consensus 75 ~~~~~i~~~e~~i 87 (88)
T cd00043 75 ATEEEILRMEKLL 87 (88)
T ss_pred CCHHHHHHHHHHh
Confidence 999998887654
No 22
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=1.8e-05 Score=76.88 Aligned_cols=100 Identities=18% Similarity=0.367 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccC--cc
Q 017386 136 NMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDN--TY 213 (372)
Q Consensus 136 ~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~--~~ 213 (372)
.+|. |-.-|.++....++..-|+.+|-.||.....+..+++.+=+|+|.+||++|+|+.+..-..+..++.-... .+
T Consensus 381 KirS-lKREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~ 459 (497)
T KOG4164|consen 381 KIRS-LKREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRL 459 (497)
T ss_pred HHHH-HHHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc
Confidence 3443 44558889999999999999999999999999999999999999999999999998887788888765443 67
Q ss_pred ChHHHHHHHHHHHHHcCCcccCc
Q 017386 214 TKDEVVKMEADILKSLKFELGSP 236 (372)
Q Consensus 214 t~~~i~~mE~~IL~~L~f~l~~p 236 (372)
++.|++..|.-||-.|.|.|+.|
T Consensus 460 nrrdLia~Ef~VlvaLefaL~~~ 482 (497)
T KOG4164|consen 460 NRRDLIAFEFPVLVALEFALHLP 482 (497)
T ss_pred cHHhhhhhhhhHHHhhhhhccCC
Confidence 89999999999999999999875
No 23
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription]
Probab=97.25 E-value=0.008 Score=61.26 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=127.6
Q ss_pred CCCcchhhhcCCCCC--HHHHHHHHH----HHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhh
Q 017386 120 RPLPDYVEKVQKDVS--ANMRGVLVD----WLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASK 193 (372)
Q Consensus 120 ~p~~~yl~~~q~~it--~~~R~~lvd----Wl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK 193 (372)
.+...|+...|.+.+ -+.|..-+. -|-+++..+++.. .+-.|.++|-.-++.+-.+....+++-.+||||+|.
T Consensus 43 ~~~G~~v~~~~~g~~~s~e~r~~t~~n~r~~i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR 121 (521)
T KOG1598|consen 43 GAQGQFVRVGQSGAGSSLESREKTIYNARRLIEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCR 121 (521)
T ss_pred ccceeEEeccccCCccchHHHHHHHHHHHhHHHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Confidence 366677777777766 244544333 5888999999999 999999999999999989999999999999999999
Q ss_pred hccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCc---ccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 017386 194 YEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFE---LGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAEL 270 (372)
Q Consensus 194 ~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~---l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~el 270 (372)
.|-.. -.+-||..+.. .+--++=.+=+.+...|.-+ +...-|..|+.+|...+.....+ ..+...+..|+.-
T Consensus 122 ~e~t~-hlliDfS~~Lq--v~Vy~LG~~~l~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~--~~Vv~~a~~L~~r 196 (521)
T KOG1598|consen 122 LEKTD-HLLIDFSSYLQ--VSVYDLGSNFLEVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKT--EDVAKTATRLAQR 196 (521)
T ss_pred hhCCc-eEEEEeccceE--EehhhhhHHHHHHHHHhccccccccccCcceeeechhHhhhcCCch--HHHHHHHHHHHHH
Confidence 86554 33344433222 23334444555566666666 56667888999998776554433 3455677788877
Q ss_pred HhcchhccCCcHHHHHHHHHHHHHHHhC
Q 017386 271 SLLDYACVKFLPSSVAASVIFLARFITQ 298 (372)
Q Consensus 271 sl~d~~~~~~~PS~iAaAai~lA~~~l~ 298 (372)
..-|.-...-+|+-|+-|||++|..+.+
T Consensus 197 Mkrdwm~tGRRPsglcGAaLliAar~h~ 224 (521)
T KOG1598|consen 197 MKRDWMQTGRRPSGLCGAALLIAARMHG 224 (521)
T ss_pred HHHHHHHhCCCccchhHHHHHHHHHHcC
Confidence 7778878889999999999999998866
No 24
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=96.36 E-value=0.015 Score=43.72 Aligned_cols=65 Identities=8% Similarity=0.159 Sum_probs=52.3
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc
Q 017386 145 LVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD 210 (372)
Q Consensus 145 l~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~ 210 (372)
|-+++..++|+.++.-.|..++++.....-+......-++++|+|+||+.+. .+-++.++...++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~-~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNG-VPRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTT-SSSSHHHHHHHCT
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcC-CCcCHHHHHHHhC
Confidence 4578999999999999999999999888878888899999999999999865 4667777765544
No 25
>KOG1674 consensus Cyclin [General function prediction only]
Probab=95.80 E-value=0.027 Score=51.98 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhcccc---------ccchh-HHHHHHHHHHHHhhhccCCCCchhhhhccccC
Q 017386 142 VDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNV---------LNRQK-LQLLGVSSMLIASKYEEISPPNVEDFCYITDN 211 (372)
Q Consensus 142 vdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~---------v~~~~-lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~ 211 (372)
-+++.++.++.+.+++++-.|..|||||..... ++--+ ..-+-++|+.+|+|+.+...-.-.-+.++ +
T Consensus 79 ~~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~v--g 156 (218)
T KOG1674|consen 79 RQYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKV--G 156 (218)
T ss_pred HHHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHh--C
Confidence 356777888899999999999999999998622 23333 55678999999999976543333333333 3
Q ss_pred ccChHHHHHHHHHHHHHcCCcccCc
Q 017386 212 TYTKDEVVKMEADILKSLKFELGSP 236 (372)
Q Consensus 212 ~~t~~~i~~mE~~IL~~L~f~l~~p 236 (372)
..+.+++..+|...|..++|++.++
T Consensus 157 gl~~~eln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 157 GLTTDELNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred CCChHhhhhhhHHHHhhCCeEEEec
Confidence 4678899999999999999999885
No 26
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=95.29 E-value=0.033 Score=53.17 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=67.1
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhcccccc--chhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHH
Q 017386 145 LVEVAEEYKLVSDTLYLTISYIDRFLSLNVLN--RQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKME 222 (372)
Q Consensus 145 l~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~--~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE 222 (372)
+.-.+....|..+.--....|++|.+.-..+. ..++..+.....++|+|+.....-.-.|.|.|+.. -+.+|+..||
T Consensus 197 v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd-~tveDmNe~E 275 (343)
T KOG1675|consen 197 VRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKD-QSVDDMNALE 275 (343)
T ss_pred hhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhh-ccHhhHHHHH
Confidence 33344444555555555667888887655444 77788888889999999976554444566666544 4789999999
Q ss_pred HHHHHHcCCcccCcch
Q 017386 223 ADILKSLKFELGSPTV 238 (372)
Q Consensus 223 ~~IL~~L~f~l~~pTp 238 (372)
+.+|..|+|+++.|..
T Consensus 276 RqfLelLqfNinvp~s 291 (343)
T KOG1675|consen 276 RQFLELLQFNINVPSS 291 (343)
T ss_pred HHHHHHHhhccCccHH
Confidence 9999999999999865
No 27
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=94.07 E-value=0.35 Score=47.08 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHH
Q 017386 142 VDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221 (372)
Q Consensus 142 vdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~m 221 (372)
.++|..++..++|+.++.-.|..++.+.....-....+..-++++|+|||++... .+.+..++..+++ .+...|.+.
T Consensus 220 ~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g-~~~t~keIa~v~~--Vs~~tI~~~ 296 (310)
T PRK00423 220 IDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLG-ERRTQREVAEVAG--VTEVTVRNR 296 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcC--CCHHHHHHH
Confidence 4889999999999999999999999988776666788899999999999999865 3467888877654 567777777
Q ss_pred HHHHHHHcCCcc
Q 017386 222 EADILKSLKFEL 233 (372)
Q Consensus 222 E~~IL~~L~f~l 233 (372)
=+.|++.|+..+
T Consensus 297 ykel~~~l~~~~ 308 (310)
T PRK00423 297 YKELAEKLDIKI 308 (310)
T ss_pred HHHHHHHhCccc
Confidence 777777776543
No 28
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=93.78 E-value=0.47 Score=35.41 Aligned_cols=58 Identities=16% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhH
Q 017386 260 LEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEI 319 (372)
Q Consensus 260 ~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l 319 (372)
+...+..+...+.-..-...-+|..+|+||||+|....+ .+--...+...+|++..++
T Consensus 14 v~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~--~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 14 VRERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNG--VPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTT--SSSSHHHHHHHCTSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcC--CCcCHHHHHHHhCCCCCcC
Confidence 455677777666555444567899999999999999886 4556677888888876543
No 29
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=90.75 E-value=0.75 Score=37.08 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHH
Q 017386 142 VDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221 (372)
Q Consensus 142 vdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~m 221 (372)
.+||.......+...++.++|-.+++..+....+-.-..-++|++|+++|.+.-...++--..+..++ .++.++|..+
T Consensus 4 ~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t--~~~~~~l~~c 81 (118)
T PF02984_consen 4 YDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPPSVIAAAAILLARKILGKEPPWPESLEKLT--GYDKEDLKEC 81 (118)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHH--TS-HHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhCccccCCccchhhc--CCCHHHHHHH
Confidence 35555553334446678888888899887777777888899999999999999653233333444455 3577787776
Q ss_pred HHHHHHHcC
Q 017386 222 EADILKSLK 230 (372)
Q Consensus 222 E~~IL~~L~ 230 (372)
=..|.+.+.
T Consensus 82 ~~~i~~~~~ 90 (118)
T PF02984_consen 82 IELIQELLS 90 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665655543
No 30
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=87.03 E-value=0.74 Score=44.96 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhh--hccccCccChH
Q 017386 139 GVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDF--CYITDNTYTKD 216 (372)
Q Consensus 139 ~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l--~~~~~~~~t~~ 216 (372)
.-|++|+..+....+........|-+++-..+...-+-+...+-||++||+||+|+-....|...+- -...+...+.+
T Consensus 153 ~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e 232 (323)
T KOG0834|consen 153 KYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNE 232 (323)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHH
Confidence 4566666666666555555777787787776666667788899999999999999987765555554 44566678999
Q ss_pred HHHHHHHHHHHHcCCc
Q 017386 217 EVVKMEADILKSLKFE 232 (372)
Q Consensus 217 ~i~~mE~~IL~~L~f~ 232 (372)
++..+...+|....-+
T Consensus 233 ~l~~i~~~~l~~y~~~ 248 (323)
T KOG0834|consen 233 LLDDICHEFLDLYEQT 248 (323)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999988888876544
No 31
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=80.15 E-value=16 Score=29.69 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--CChhhHHHHHHHH
Q 017386 261 EFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG--YKPSEIEGCVLIL 326 (372)
Q Consensus 261 ~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg--~~~~~l~~c~~~l 326 (372)
..+|.++.+.-+.........+..+|++|+++|.++... ..++...+...++ ++.+++..-=..|
T Consensus 52 ~~~A~~~~dr~~~~~~~~~~~~~li~~~cl~lA~K~~e~-~~~~~~~~~~~~~~~~~~~~i~~~E~~i 118 (127)
T PF00134_consen 52 LHLAIYLFDRFLSKRPVNRSKLQLIALACLFLASKMEED-NPPSISDLIRISDNTFTKKDILEMEREI 118 (127)
T ss_dssp HHHHHHHHHHHHTTS-TTCCGHHHHHHHHHHHHHHHHTS-S--HHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhhhhhhhHHHHhhhhhcc-ccchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346666666666655667788999999999999998864 4566677766664 4555555544433
No 32
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=78.67 E-value=4.9 Score=38.67 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhcc
Q 017386 141 LVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEE 196 (372)
Q Consensus 141 lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE 196 (372)
-.+++-..+..++|+.++--.|..+++..............-+|++|++|||.+..
T Consensus 194 p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P~glAaaaiy~as~l~~ 249 (285)
T COG1405 194 PSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSPAGLAAAAIYLASLLLG 249 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhC
Confidence 45778899999999999999999999999888878888899999999999999866
No 33
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=57.28 E-value=50 Score=32.36 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHH
Q 017386 159 LYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADI 225 (372)
Q Consensus 159 l~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~I 225 (372)
+..+-+|+.--+-.....+..-..||++|+++|+..+|+..|....+-.+.+ +++++|-..=..+
T Consensus 161 ~Q~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf~~Fd--~~k~eid~ic~~l 225 (367)
T KOG0835|consen 161 LQAAWNFMNDSLRTDVFVRYSPESIACACIYLAARNLEIPLPFQPHWFKAFD--TTKREIDEICYRL 225 (367)
T ss_pred HHHHHHhhhhccccceeeecCHHHHHHHHHHHHHhhhcCCCCCCccHHHHcC--CcHHHHHHHHHHH
Confidence 4445555555555555677788999999999999999987777776655544 4555555443333
No 34
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and SV40 large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion (see IPR002720 from INTERPRO) appears to be required for the stable folding of the B box. Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the B-box is on C-terminal side of the A-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1GUX_B 3POM_A 1GH6_B 1N4M_A 1O9K_H 4ELL_B 2R7G_C 4ELJ_A.
Probab=41.45 E-value=83 Score=26.75 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHHhhhccCCCCchhhhhc
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFLSLN--VLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCY 207 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfls~~--~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~ 207 (372)
.-|.++|..++++++.....-..|+..+..+ -+...++.-+-++|+++-+|+.. ...+..++..
T Consensus 16 ~Rl~~LC~~L~l~~~~~~~iwt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~-~~~sF~~Ii~ 81 (135)
T PF01857_consen 16 VRLQDLCERLDLSSDLREKIWTCFEHSLTHHTELMKDRHLDQIILCAIYGICKVSK-EELSFKDIIK 81 (135)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHHHSGGGGTTS-HHHHHHHHHHHHHHHTT--S--HHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhhc-CCCCHHHHHH
Confidence 3478899999999998888888888888643 24566699999999999999965 4556666553
No 35
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=38.98 E-value=2.3e+02 Score=27.58 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.3
Q ss_pred HHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhC
Q 017386 264 GYYLAELSLLDYACVKFLPSSVAASVIFLARFITQ 298 (372)
Q Consensus 264 a~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~ 298 (372)
|..+..--++...+..|.|..||++|++||.+.-.
T Consensus 82 Aivyf~RFy~~~Sv~~~~p~~Ia~tclfLA~KvEE 116 (305)
T TIGR00569 82 AIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEE 116 (305)
T ss_pred HHHHHhHHhccCchhhcCHHHHHHHHHHHHHhccc
Confidence 33333333445556678999999999999999765
No 36
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=36.04 E-value=92 Score=30.07 Aligned_cols=63 Identities=5% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccc
Q 017386 146 VEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYIT 209 (372)
Q Consensus 146 ~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~ 209 (372)
...|..|+|+..+.-.|-.+.-++-....+.....--||++.+|+++-+.+ ..-...++..++
T Consensus 208 ~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~-~kkt~keI~~vt 270 (308)
T KOG1597|consen 208 PRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSD-EKKTQKEIGEVT 270 (308)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhcc-CcccHHHHHHHh
Confidence 333333333333333333333333222223334445566777777777655 344444544433
No 37
>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []. They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.
Probab=35.97 E-value=1.4e+02 Score=29.56 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhccc------cccchhHHHHHHHHHHHHhhh--ccCCCCchhhhhc
Q 017386 139 GVLVDWLVEVAEEY---KLVSDTLYLTISYIDRFLSLN------VLNRQKLQLLGVSSMLIASKY--EEISPPNVEDFCY 207 (372)
Q Consensus 139 ~~lvdWl~ev~~~~---~l~~~Tl~lAV~llDRfls~~------~v~~~~lqLva~tcL~IAsK~--eE~~~p~i~~l~~ 207 (372)
..+|-||..|-+.+ |..+..|-.-.+++--||..+ .-...++|-+-+||||||=-| .|+.-|--.-|+.
T Consensus 222 ~~~vmWlR~vDRsLLlqgwqd~~fi~pan~vf~yml~r~~~~~~~~~~~~l~~~~l~cly~sysy~gneisyplkpflv~ 301 (346)
T PF03261_consen 222 GDVVMWLRAVDRSLLLQGWQDQAFINPANVVFVYMLCRDVVSGEVSSERELQAIVLTCLYLSYSYMGNEISYPLKPFLVE 301 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SS-S--HHHHHHHHHHHHHHS-TT--SHHHHHHHHHHHHHHHHHHH-SSS---SGGG--S
T ss_pred cceEeehhhcCHHHHhccccccceeccchhhhhHHHHHHhhccccCCHHHHHHHHHHHHHHHhhhcCcccccccCCeeec
Confidence 34666666666654 333344433333333343221 124566999999999999888 5666554444443
Q ss_pred cccCccChHHHHHHHHHHHHHcCCccc--CcchhhHHHHHHH
Q 017386 208 ITDNTYTKDEVVKMEADILKSLKFELG--SPTVKTFLRRFTR 247 (372)
Q Consensus 208 ~~~~~~t~~~i~~mE~~IL~~L~f~l~--~pTp~~Fl~~~l~ 247 (372)
- +++.|.+-=..|.+.+.=++- ...|..|-+.|..
T Consensus 302 ~-----~~~~fw~~~~~~~~~~s~~ml~~n~~~~~ft~~~~~ 338 (346)
T PF03261_consen 302 E-----SKEAFWDRCLSIINRLSAKMLRINADPHFFTEVFTD 338 (346)
T ss_dssp S------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred c-----cHHHHHHHHHHHHHHhhHHHhhhcCCCchHHHHHHH
Confidence 2 344444444444444332221 2245555555543
No 38
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=33.08 E-value=3.1e+02 Score=23.33 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=44.4
Q ss_pred cchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc-----chhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 017386 236 PTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLL-----DYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQ 310 (372)
Q Consensus 236 pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~-----d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~ 310 (372)
.+..+|+.++.+..+-... ...++.++++-... ....-.....-+-.+|+.+|.+.++. ...+.....+
T Consensus 52 i~i~~fl~ri~~~~~~s~~-----~~i~aliYl~Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D-~~~~n~~~a~ 125 (149)
T PF08613_consen 52 ISIRDFLSRILKYTQCSPE-----CLILALIYLDRLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDD-NTYSNKSWAK 125 (149)
T ss_dssp S-HHHHHHHHHHHTT--HH-----HHHHHHHHHHHHHH--H-TT---STTTHHHHHHHHHHHHHHHH-S-S---HHHHHH
T ss_pred CcHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHhhccc-ccccHHHHHh
Confidence 3456677777665443321 22233333332222 11223456778889999999999874 5677888889
Q ss_pred HhCCChhhHHHH
Q 017386 311 YSGYKPSEIEGC 322 (372)
Q Consensus 311 ~tg~~~~~l~~c 322 (372)
++|++..++..-
T Consensus 126 v~gis~~eln~l 137 (149)
T PF08613_consen 126 VGGISLKELNEL 137 (149)
T ss_dssp HHTS-HHHHHHH
T ss_pred hcCCCHHHHHHH
Confidence 999988877643
No 39
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=32.01 E-value=2.6e+02 Score=27.57 Aligned_cols=51 Identities=14% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcchhccCCc---HHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 017386 261 EFLGYYLAELSLLDYACVKFL---PSSVAASVIFLARFITQPSKHPWTASLQQY 311 (372)
Q Consensus 261 ~~la~yl~elsl~d~~~~~~~---PS~iAaAai~lA~~~l~~~~~~w~~~L~~~ 311 (372)
..+|..+++-.+..+.+-+.+ --+||+||+.||.++-.+..+...+....+
T Consensus 99 ~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~ 152 (335)
T KOG0656|consen 99 FLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEY 152 (335)
T ss_pred HHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhcc
Confidence 346666666666677777777 568899999999998765434333333333
No 40
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=28.80 E-value=48 Score=25.88 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFL 170 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfl 170 (372)
=..+||||++.. ...=..+++.++-.++|.=+
T Consensus 35 GsElVdWL~~~~-~~~sR~eAv~lgq~Ll~~gi 66 (85)
T cd04441 35 GSEFIDWLLQEG-EAESRREAVQLCRRLLEHGI 66 (85)
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCC
Confidence 457999999965 23334566666666666533
No 41
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=24.30 E-value=67 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
=..+||||++... ..-..+++.++-.++|.
T Consensus 33 GselVdWL~~~~~-~~sR~eAv~lg~~Ll~~ 62 (83)
T cd04443 33 GCDLVSWLIEVGL-AQDRGEAVLYGRRLLQG 62 (83)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHC
Confidence 4679999998522 22234677777777664
No 42
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=23.50 E-value=61 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
=..+||||++... ..-..+.+.++-.++|.
T Consensus 31 GselVdWL~~~~~-~~~r~eAv~lg~~Ll~~ 60 (81)
T cd04439 31 GNEFVSWLLEIGE-ISKPEEGVNLGQALLEN 60 (81)
T ss_pred hHHHHHHHHHcCC-CCCHHHHHHHHHHHHHC
Confidence 4579999997542 11134677777777664
No 43
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=22.82 E-value=57 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhcccccc
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLN 176 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~ 176 (372)
=..+|+||++-.....=..+++.++-.|++.=+-.+..+
T Consensus 32 GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~ 70 (84)
T cd04438 32 GSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVN 70 (84)
T ss_pred chHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 467999998865544445678888887777654444333
No 44
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.50 E-value=75 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFL 170 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfl 170 (372)
=..+||||++-.....-..+++.++-.++|.=+
T Consensus 32 G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~ 64 (83)
T cd04449 32 GSEAVSWLINNFEDVDTREEAVELGQELMNEGL 64 (83)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence 567999999754433334466666666666433
No 45
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.59 E-value=75 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 137 MRGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 137 ~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
.=..+||||++.. ...-..+++.++-.++|.
T Consensus 39 vGsElVdWLi~~g-~~~tR~eAv~~gq~Ll~~ 69 (93)
T cd04440 39 PASKLVDWLLAQG-DCRTREEAVILGVGLCNN 69 (93)
T ss_pred chhHHHHHHHHcC-CCCCHHHHHHHHHHHHhC
Confidence 3467999999983 233344566666666654
No 46
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=21.51 E-value=73 Score=24.66 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
=..+||||++.... .=..+++.++-.++|.
T Consensus 31 GselVdWL~~~~~~-~sR~eAv~lgq~Ll~~ 60 (82)
T cd04442 31 GKELIDWLIEHKEA-SDRETAIKIMQKLLDH 60 (82)
T ss_pred cHHHHHHHHHcCCC-CCHHHHHHHHHHHHHC
Confidence 35799999975431 2234555556555554
Done!