Query 017386
Match_columns 372
No_of_seqs 269 out of 1767
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 4.2E-56 1.4E-60 419.1 25.0 257 99-364 3-260 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 1E-54 3.5E-59 411.6 19.3 253 97-360 1-255 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 1.5E-50 5.2E-55 380.6 25.5 245 89-339 7-255 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 8.6E-50 2.9E-54 374.8 25.9 239 89-333 8-249 (254)
5 3g33_B CCND3 protein; Ser/Thr 100.0 1.1E-48 3.7E-53 376.6 24.7 237 92-333 29-268 (306)
6 1w98_B Cyclin E, G1/S-specific 100.0 3.7E-48 1.2E-52 369.2 25.5 252 93-357 8-269 (283)
7 1f5q_B Gamma herpesvirus cycli 100.0 4.3E-49 1.5E-53 369.2 16.1 230 89-333 10-243 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 1.7E-46 6E-51 355.5 22.8 238 90-333 14-258 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.6E-36 5.4E-41 284.9 14.0 210 122-335 25-254 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 7E-36 2.4E-40 284.7 18.5 206 135-349 40-263 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 8.9E-36 3E-40 279.8 16.7 214 124-346 17-253 (257)
12 1zp2_A RNA polymerase II holoe 100.0 1.3E-33 4.3E-38 261.9 14.7 187 138-333 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 3E-34 1E-38 281.3 10.8 211 125-344 25-258 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 9.8E-32 3.3E-36 260.3 22.5 209 135-345 54-277 (323)
15 1c9b_A General transcription f 99.9 1.2E-25 4.1E-30 204.2 20.2 185 136-330 3-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.3E-21 7.7E-26 174.9 21.0 185 136-330 7-193 (200)
17 3k7a_M Transcription initiatio 99.7 1.4E-17 4.9E-22 162.3 5.5 183 138-330 126-320 (345)
18 4bbr_M Transcription initiatio 99.2 3.7E-11 1.3E-15 116.8 9.2 180 139-328 127-318 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.4 9.2E-07 3.2E-11 83.0 11.0 105 141-248 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.4 0.011 3.8E-07 52.1 8.9 89 143-234 110-198 (200)
21 1c9b_A General transcription f 94.3 0.12 4.1E-06 45.6 7.9 86 142-230 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 90.5 1.4 4.9E-05 39.9 10.0 87 143-229 148-238 (257)
23 2i53_A Cyclin K; cell cycle, t 89.3 1.6 5.3E-05 39.6 9.1 88 143-230 153-250 (258)
24 1zp2_A RNA polymerase II holoe 89.1 0.54 1.8E-05 42.2 5.8 83 144-230 137-219 (235)
25 3rgf_B Cyclin-C; protein kinas 88.1 1.2 4.1E-05 41.3 7.6 81 143-228 159-239 (285)
26 2pk2_A Cyclin-T1, protein TAT; 85.5 1.5 5.1E-05 42.2 6.9 88 143-230 155-246 (358)
27 4bbr_M Transcription initiatio 84.5 5.4 0.00019 38.0 10.3 69 260-330 146-214 (345)
28 2f2c_A Cyclin homolog, V-cycli 82.2 4.4 0.00015 36.6 8.3 84 144-229 155-246 (254)
29 1g3n_C V-cyclin; cyclin-depend 80.4 5.5 0.00019 36.0 8.3 86 142-229 152-246 (257)
30 2cch_B Cyclin A2, cyclin-A; co 77.9 4.2 0.00014 36.9 6.6 85 142-229 140-226 (260)
31 1jkw_A Cyclin H; cell cycle, c 76.9 9.4 0.00032 35.8 9.0 75 156-230 185-260 (323)
32 2b9r_A Human cyclin B1; cell c 76.9 13 0.00044 33.8 9.7 68 262-330 60-129 (269)
33 3k7a_M Transcription initiatio 75.7 1.8 6.2E-05 41.3 3.6 68 262-331 148-215 (345)
34 2w96_A G1/S-specific cyclin-D1 72.3 24 0.00084 31.9 10.3 67 263-330 80-148 (271)
35 3g33_B CCND3 protein; Ser/Thr 65.1 26 0.00087 32.5 9.0 67 263-330 94-162 (306)
36 2ast_A S-phase kinase-associat 62.0 14 0.00049 30.7 6.0 77 131-219 47-150 (159)
37 1w98_B Cyclin E, G1/S-specific 60.8 40 0.0014 30.7 9.3 54 277-331 88-143 (283)
38 2p1m_A SKP1-like protein 1A; F 60.1 12 0.00041 31.3 5.2 38 181-219 112-149 (160)
39 3h4c_A Transcription factor TF 59.6 48 0.0016 29.2 8.8 88 140-231 14-104 (260)
40 3v7d_A Suppressor of kinetocho 56.8 12 0.00041 31.7 4.6 55 152-218 99-156 (169)
41 1f5q_B Gamma herpesvirus cycli 44.7 1.3E+02 0.0044 26.9 9.8 54 276-330 85-140 (252)
42 1fs1_B SKP1, cyclin A/CDK2-ass 43.6 29 0.001 28.2 4.8 67 131-208 42-135 (141)
43 2qdj_A Retinoblastoma-associat 30.3 95 0.0033 28.8 6.5 65 145-210 6-74 (304)
44 2pmi_B PHO85 cyclin PHO80, ami 28.8 3.1E+02 0.011 25.2 9.6 86 237-328 76-164 (293)
45 3m03_A ORC6, origin recognitio 26.7 1.5E+02 0.0052 22.5 6.0 50 280-331 43-92 (95)
46 2wh0_Q Pkcev3, protein kinase 26.0 48 0.0016 19.2 2.2 18 215-232 12-29 (31)
47 3o0g_D Cyclin-dependent kinase 25.9 1.7E+02 0.0059 23.7 6.3 87 139-230 28-125 (149)
48 1unl_D Cyclin-dependent kinase 24.6 1.6E+02 0.0056 25.1 6.2 107 139-250 73-192 (208)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.2e-56 Score=419.14 Aligned_cols=257 Identities=43% Similarity=0.715 Sum_probs=241.7
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccch
Q 017386 99 CGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQ 178 (372)
Q Consensus 99 ~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~ 178 (372)
|.+|++|||.||+.+| .+.+|.++|++. |++|++.||.+++|||++|+..|+++++|+++||+|+|||++..++.+.
T Consensus 3 ~~eY~~di~~~l~~~E--~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 79 (260)
T 2cch_B 3 VPDYHEDIHTYLREME--VKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 79 (260)
T ss_dssp CCTTHHHHHHHHHHHH--HHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred hHhHHHHHHHHHHHHH--hhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence 6899999999999999 456788899986 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhH
Q 017386 179 KLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNL 258 (372)
Q Consensus 179 ~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~ 258 (372)
++||+|+||||||||+||..+|.+.+|+.++++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+. .
T Consensus 80 ~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~----~ 155 (260)
T 2cch_B 80 KLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN----C 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC----H
T ss_pred HHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh----H
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHhcchh-ccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCCCC
Q 017386 259 QLEFLGYYLAELSLLDYA-CVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGN 337 (372)
Q Consensus 259 ~~~~la~yl~elsl~d~~-~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~~~ 337 (372)
.+..+++|++++++.|+. |++|+||.||+|||++|+..++. +.|...+..++||+++++.+|+..|.+++.+...+.
T Consensus 156 ~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~ 233 (260)
T 2cch_B 156 KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHA 233 (260)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcc
Confidence 466799999999999999 99999999999999999999874 789999999999999999999999999998877778
Q ss_pred hhHHHHhhCCCccCcccccCCCCCCCh
Q 017386 338 LQAVREKYKQHKFKCVATTPSSPEIPS 364 (372)
Q Consensus 338 ~~av~~KY~~~~~~~Va~~~~~~~~p~ 364 (372)
+++|++||++++|++||.+|+|..+|.
T Consensus 234 ~~~i~~Ky~~~~~~~vs~~~~~~~~~~ 260 (260)
T 2cch_B 234 QQSIREKYKNSKYHGVSLLNPPETLNL 260 (260)
T ss_dssp CCHHHHHHTSGGGTTGGGSCCCSCCCC
T ss_pred hHHHHHHHCcccccceeCCCCcccCCC
Confidence 899999999999999999999998873
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1e-54 Score=411.64 Aligned_cols=253 Identities=39% Similarity=0.685 Sum_probs=229.7
Q ss_pred cchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhcccccc
Q 017386 97 QICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLN 176 (372)
Q Consensus 97 ~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~ 176 (372)
|+|.+|++|||+||+.+|. +..|.++|+++ | +|++.||.+++|||++++..|+++++|+++||+|+|||++...++
T Consensus 1 ~~~~eY~~di~~~l~~~E~--~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~ 76 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEA--AQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVP 76 (269)
T ss_dssp ------CCTTTTTHHHHHH--TTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CChHHHHHHHHHHHHHHHH--hhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 5789999999999999994 56788899986 6 999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchh
Q 017386 177 RQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNAS 256 (372)
Q Consensus 177 ~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~ 256 (372)
+.++||+|+||||||||+||..+|.+.+|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|++..+.+
T Consensus 77 ~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~---- 152 (269)
T 2b9r_A 77 KKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD---- 152 (269)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC----
T ss_pred HHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred hHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCC-
Q 017386 257 NLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRG- 335 (372)
Q Consensus 257 ~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~- 335 (372)
..+..+++|++++++.++.|++|+||.||+|||++|+.+++. ..|...|..++||+++++.+|+..|.+++.....
T Consensus 153 -~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~--~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~ 229 (269)
T 2b9r_A 153 -VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN--GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQG 229 (269)
T ss_dssp -HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC--CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 245678999999999999999999999999999999999985 4899999999999999999999999998876543
Q ss_pred -CChhHHHHhhCCCccCcccccCCCC
Q 017386 336 -GNLQAVREKYKQHKFKCVATTPSSP 360 (372)
Q Consensus 336 -~~~~av~~KY~~~~~~~Va~~~~~~ 360 (372)
..+.+|++||++++|++||.+|++.
T Consensus 230 ~~~~~ai~~Ky~~~~~~~vs~~~~~~ 255 (269)
T 2b9r_A 230 LTKHMTVKNKYATSKHAKISTLPQLN 255 (269)
T ss_dssp CCSCCHHHHHTTSGGGTTGGGSSCCS
T ss_pred CcchHHHHHHhcchhhCcccCCCCCC
Confidence 5889999999999999999997654
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.5e-50 Score=380.56 Aligned_cols=245 Identities=18% Similarity=0.248 Sum_probs=215.0
Q ss_pred ccCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 89 IDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 89 ~~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
++...+||++|.+ +||| +|+.+| .++.|.++|+...|++|++.||.++||||++|+..|++.++|+|+||+|+||
T Consensus 7 ~~~~~~dp~~~~~--~~i~-~l~~~E--~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DR 81 (257)
T 1g3n_C 7 PPSGLLDPTLCED--RIFY-NILEIE--PRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81 (257)
T ss_dssp ---------CHHH--HHHH-HHHHHG--GGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccCCCCCccccH--HHHH-HHHHHH--HHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4577889999987 9999 999999 5578889999877999999999999999999999999999999999999999
Q ss_pred hhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHH
Q 017386 169 FLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRV 248 (372)
Q Consensus 169 fls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~ 248 (372)
|++...+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.
T Consensus 82 fls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~ 161 (257)
T 1g3n_C 82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLK 161 (257)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCC----CCCcHHHHHHHhCCChhhHHHHHH
Q 017386 249 AQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPS----KHPWTASLQQYSGYKPSEIEGCVL 324 (372)
Q Consensus 249 ~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~----~~~w~~~L~~~tg~~~~~l~~c~~ 324 (372)
++.+.+. ...+..+++|++++++.|+.|++|+||.||+|||++|+..++.. .+.|...|..++||+.+++.+|+.
T Consensus 162 ~~~~~~~-~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~ 240 (257)
T 1g3n_C 162 LVGGSQH-LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVE 240 (257)
T ss_dssp HSCSSTT-HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCChhH-HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 8654432 22356689999999999999999999999999999999988732 257999999999999999999999
Q ss_pred HHHHHHhhcCCCChh
Q 017386 325 ILHDLYLSRRGGNLQ 339 (372)
Q Consensus 325 ~l~~l~~~~~~~~~~ 339 (372)
.|.+++.+.....+.
T Consensus 241 ~i~~l~~~~~~~~l~ 255 (257)
T 1g3n_C 241 QILTSVSDFDLRILD 255 (257)
T ss_dssp HHHHHHHHCCCCC--
T ss_pred HHHHHHHHCCHHhhc
Confidence 999999876555543
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=8.6e-50 Score=374.84 Aligned_cols=239 Identities=18% Similarity=0.271 Sum_probs=214.9
Q ss_pred ccCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 89 IDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 89 ~~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
.+.+.+||++|.+ +|||. |+.+| .++.|.++|++..|+++++.||.++||||++|+..|++.++|+|+||+|+||
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E--~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DR 82 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLR--ELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDR 82 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHH--HTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCCCCcccccH--HHHHH-HHHHH--HhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3467889999988 99999 99999 5678889999877999999999999999999999999999999999999999
Q ss_pred hhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHH
Q 017386 169 FLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRV 248 (372)
Q Consensus 169 fls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~ 248 (372)
|++...+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.
T Consensus 83 fls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 162 (254)
T 2f2c_A 83 YLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNA 162 (254)
T ss_dssp HTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHH
T ss_pred HHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCc---HHHHHHHhCCChhhHHHHHHH
Q 017386 249 AQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPW---TASLQQYSGYKPSEIEGCVLI 325 (372)
Q Consensus 249 ~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w---~~~L~~~tg~~~~~l~~c~~~ 325 (372)
++.+.+. ...+...++|++++++.|+.|++|+||.||+|||++|+...+.....| ...|+.++||+.+++.+|+..
T Consensus 163 ~~~~~~~-~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~ 241 (254)
T 2f2c_A 163 LKIPEDL-WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQ 241 (254)
T ss_dssp TTCCGGG-HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCChhh-HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7654432 223456899999999999999999999999999999999863322236 889999999999999999999
Q ss_pred HHHHHhhc
Q 017386 326 LHDLYLSR 333 (372)
Q Consensus 326 l~~l~~~~ 333 (372)
|.+++.+.
T Consensus 242 i~~~~~~~ 249 (254)
T 2f2c_A 242 VSEAFSLY 249 (254)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998654
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=376.55 Aligned_cols=237 Identities=24% Similarity=0.360 Sum_probs=210.0
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhc
Q 017386 92 RSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLS 171 (372)
Q Consensus 92 ~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls 171 (372)
...||.++ |.+|||++|+.+| .++.|.++|++++|++|++.||.++|+||++|+..|+++++|+++||+|||||++
T Consensus 29 a~~dp~l~--~~~~i~~~l~~~E--~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls 104 (306)
T 3g33_B 29 AGPDPRLL--GDQRVLQSLLRLE--ERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS 104 (306)
T ss_dssp ----------CHHHHHHHHHHHG--GGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCccc--chHHHHHHHHHHH--HHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHh
Confidence 45578887 8999999999999 5678889999988999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhc
Q 017386 172 LNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQE 251 (372)
Q Consensus 172 ~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~ 251 (372)
...+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++.
T Consensus 105 ~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~ 184 (306)
T 3g33_B 105 CVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL 184 (306)
T ss_dssp HCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHhCCChhhHHHHHHHHHH
Q 017386 252 DYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSK---HPWTASLQQYSGYKPSEIEGCVLILHD 328 (372)
Q Consensus 252 ~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~---~~w~~~L~~~tg~~~~~l~~c~~~l~~ 328 (372)
..+. ...+...++|++++++.++.|++|+||.||+|||++|+..++... ..|...|.+++||+.++|.+|+..|.+
T Consensus 185 ~~~~-~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~ 263 (306)
T 3g33_B 185 PRDR-QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEA 263 (306)
T ss_dssp CTTT-HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ChhH-HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4322 223556789999999999999999999999999999999988421 346789999999999999999999999
Q ss_pred HHhhc
Q 017386 329 LYLSR 333 (372)
Q Consensus 329 l~~~~ 333 (372)
++.+.
T Consensus 264 l~~~~ 268 (306)
T 3g33_B 264 ALRES 268 (306)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98763
No 6
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.7e-48 Score=369.21 Aligned_cols=252 Identities=29% Similarity=0.466 Sum_probs=223.1
Q ss_pred CCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhcc
Q 017386 93 SDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL 172 (372)
Q Consensus 93 ~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~ 172 (372)
..+|++|.+|.+|||.+|+.+| .++.|.++|++. |++|++.||.++++||++++..|++.++|+++||+|+|||++.
T Consensus 8 ~~~p~l~~~y~~~i~~~l~~~E--~~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~ 84 (283)
T 1w98_B 8 SPLPVLSWANREEVWKIMLNKE--KTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMAT 84 (283)
T ss_dssp CCSCCCSSSCHHHHHHHHHHHT--TTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhcCHHHHHHHHHHHH--HHhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHh
Confidence 4589999999999999999999 567788899986 8999999999999999999999999999999999999999998
Q ss_pred -ccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhc
Q 017386 173 -NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQE 251 (372)
Q Consensus 173 -~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~ 251 (372)
..+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|.+||+.||++|+|+++.|||++|+.+|++..+.
T Consensus 85 ~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 85 QENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred ccchh------hHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHH
Q 017386 252 DYNAS------NLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLI 325 (372)
Q Consensus 252 ~~~~~------~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~ 325 (372)
+.... .......+.+++++++.|+.|++|+||.||+|||++|+ |.+.+..++||+++++.+|+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~---------~~~~l~~~tg~~~~~i~~c~~~ 235 (283)
T 1w98_B 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS---------SSELMQKVSGYQWCDIENCVKW 235 (283)
T ss_dssp CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS---------CHHHHHHHSCCCHHHHHHHHHH
T ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH---------ChHHHHHHhCCCHHHHHHHHHH
Confidence 32210 11222357789999999999999999999999999984 6788999999999999999999
Q ss_pred HHHHHhhc---CCCChhHHHHhhCCCccCcccccC
Q 017386 326 LHDLYLSR---RGGNLQAVREKYKQHKFKCVATTP 357 (372)
Q Consensus 326 l~~l~~~~---~~~~~~av~~KY~~~~~~~Va~~~ 357 (372)
|..++..- ..+.+.. ++||++..|+.|+..+
T Consensus 236 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 269 (283)
T 1w98_B 236 MVPFAMVIRETGSSKLKH-FRGVADEDAHNIQTHR 269 (283)
T ss_dssp HHHHHHHHHHHCCCCCCC-CTTSCGGGGGGBCCCC
T ss_pred HHHHHHHHHhcChHhhcc-hhccCHHhccCcccCc
Confidence 98876532 2344443 6799999999999853
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.3e-49 Score=369.23 Aligned_cols=230 Identities=15% Similarity=0.215 Sum_probs=204.0
Q ss_pred ccCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 017386 89 IDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDR 168 (372)
Q Consensus 89 ~~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDR 168 (372)
++....||++|+ +|||.+++..|. ++.| ...|++|++.||.++||||++|+..|++.++|+|+||+|+||
T Consensus 10 ~~~~~~dp~l~~---d~i~~~l~~~E~--~~~p-----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDR 79 (252)
T 1f5q_B 10 LDSSLLNEEDCR---QMIYRSEREHDA--RMVG-----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDE 79 (252)
T ss_dssp CSCTTCCHHHHH---HHHHHHHHHHHH--HHSS-----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCcCcCCHHHhH---HHHHHHHHHHHH--HhCc-----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 467778999985 499999999994 3455 245789999999999999999999999999999999999999
Q ss_pred hhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHH
Q 017386 169 FLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRV 248 (372)
Q Consensus 169 fls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~ 248 (372)
||+...+.+.++||+|+||||||||+||..||.+.+|++++++.|+.++|++||+.||++|+|+++.|||++|+++|++.
T Consensus 80 fLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 159 (252)
T 1f5q_B 80 LFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159 (252)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCc----HHHHHHHhCCChhhHHHHHH
Q 017386 249 AQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPW----TASLQQYSGYKPSEIEGCVL 324 (372)
Q Consensus 249 ~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w----~~~L~~~tg~~~~~l~~c~~ 324 (372)
++.+.+. ...+..++.|+++++++|+.|+.|+||+||+||+.++. +. ..+| ...|.+++||+.+++.+|++
T Consensus 160 ~~~~~~~-~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~-~~~~~~~~~~~L~~~t~~~~~~l~~C~~ 234 (252)
T 1f5q_B 160 MHAPRED-YLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---NQ-KYDYYENRIDGVCKSLYITKEELHQCCD 234 (252)
T ss_dssp TTCCHHH-HHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TT-TCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCcch-HHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---cc-CCCchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 7544322 22456789999999999999999999999999965543 32 2344 67899999999999999999
Q ss_pred HHHHHHhhc
Q 017386 325 ILHDLYLSR 333 (372)
Q Consensus 325 ~l~~l~~~~ 333 (372)
.|.+++.+.
T Consensus 235 ~i~~~l~~~ 243 (252)
T 1f5q_B 235 LVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988654
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.7e-46 Score=355.51 Aligned_cols=238 Identities=27% Similarity=0.392 Sum_probs=205.8
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHhhcCCCCCCCcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Q 017386 90 DARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRF 169 (372)
Q Consensus 90 ~~~~~d~~~~~~Y~~dI~~~l~~~E~~~~~~p~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRf 169 (372)
.....||+++ .+|||.+|+.+| .++.|.++|+...|++|++.||.++++||++++..|+++++|+++||+|+|||
T Consensus 14 ~~~~~dp~~~---~~~i~~~l~~~E--~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRf 88 (271)
T 2w96_A 14 RRAYPDANLL---NDRVLRAMLKAE--ETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRF 88 (271)
T ss_dssp --------------CHHHHHHHHHH--HHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCccc---HHHHHHHHHHHH--HHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHh
Confidence 4566788887 689999999999 46789999998889999999999999999999999999999999999999999
Q ss_pred hccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHH
Q 017386 170 LSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVA 249 (372)
Q Consensus 170 ls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~ 249 (372)
++..++.+.++||+|+||||||||+||..||.++++++++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.+
T Consensus 89 ls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l 168 (271)
T 2w96_A 89 LSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKM 168 (271)
T ss_dssp HTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTS
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCC---CCC----CcHHHHHHHhCCChhhHHHH
Q 017386 250 QEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQP---SKH----PWTASLQQYSGYKPSEIEGC 322 (372)
Q Consensus 250 ~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~---~~~----~w~~~L~~~tg~~~~~l~~c 322 (372)
+.+.+. ...+...+++++++++.|+.|++|+||.||+|||++|+..++. ..+ .|...|..++||+++++++|
T Consensus 169 ~~~~~~-~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c 247 (271)
T 2w96_A 169 PEAEEN-KQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247 (271)
T ss_dssp CCCHHH-HHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHH
T ss_pred CCCchH-HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHH
Confidence 544322 1223457889999999999999999999999999999988752 223 35578999999999999999
Q ss_pred HHHHHHHHhhc
Q 017386 323 VLILHDLYLSR 333 (372)
Q Consensus 323 ~~~l~~l~~~~ 333 (372)
+..|.+++.+.
T Consensus 248 ~~~i~~l~~~~ 258 (271)
T 2w96_A 248 QEQIEALLESS 258 (271)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-36 Score=284.87 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=181.0
Q ss_pred CcchhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCc
Q 017386 122 LPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPN 201 (372)
Q Consensus 122 ~~~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~ 201 (372)
.|++.+++++++...||..+++||.+++..|+|+++|+++|++|||||++.+++.+.++|++|+||||||||+|| .++.
T Consensus 25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~ 103 (258)
T 2i53_A 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKK 103 (258)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCC
T ss_pred CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-cccc
Confidence 456777777888889999999999999999999999999999999999999999999999999999999999999 5889
Q ss_pred hhhhhccc-----cCcc------ChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 017386 202 VEDFCYIT-----DNTY------TKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAEL 270 (372)
Q Consensus 202 i~~l~~~~-----~~~~------t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~el 270 (372)
+.+++..+ ++.| ++++|++||+.||++|+|+++.|||++|+.+|++.++.+.+ ....+..+++++++.
T Consensus 104 l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~~~~~A~~l~~~ 182 (258)
T 2i53_A 104 CKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-KIQKLVQMAWTFVND 182 (258)
T ss_dssp HHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHH
Confidence 99998643 3444 47899999999999999999999999999999987654331 112467799999999
Q ss_pred HhcchhccCCcHHHHHHHHHHHHHHHhCCCCC---------CcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCC
Q 017386 271 SLLDYACVKFLPSSVAASVIFLARFITQPSKH---------PWTASLQQYSGYKPSEIEGCVLILHDLYLSRRG 335 (372)
Q Consensus 271 sl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~---------~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~ 335 (372)
++.++.+++|+||.||+|||++|..+++.+.+ +|...+ .+|++.+++.+|+..|.++|...+.
T Consensus 183 s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~l~~~~~~il~ly~~~~~ 254 (258)
T 2i53_A 183 SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF--VQDVPVDVLEDICHQILDLYSQGKQ 254 (258)
T ss_dssp HTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT--SSSCCHHHHHHHHHHHHTTTSSSCC
T ss_pred HHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh--ccCCCHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999875333 343321 3699999999999999999876543
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=284.70 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc----
Q 017386 135 ANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD---- 210 (372)
Q Consensus 135 ~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~---- 210 (372)
..||..+++||.+++..|+|+++|+++|++|||||++.+.+.+.++|++|+||||||||+||..+|.+.+++.++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 3799999999999999999999999999999999999999999999999999999999999999888999876542
Q ss_pred ----------CccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCC
Q 017386 211 ----------NTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKF 280 (372)
Q Consensus 211 ----------~~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~ 280 (372)
..+++++|++||+.||++|+|++.++||++|+.+|++.++.+ ..+..+++++++.++.++.++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-----~~~~~~A~~~l~~sl~t~~~l~~ 194 (285)
T 3rgf_B 120 TRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-----DMLLPLAWRIVNDTYRTDLCLLY 194 (285)
T ss_dssp HHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHTTSSHHHHS
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHccChhhcc
Confidence 247899999999999999999999999999999999887643 24567999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcC----CCChhHHHHhhCCCc
Q 017386 281 LPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRR----GGNLQAVREKYKQHK 349 (372)
Q Consensus 281 ~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~----~~~~~av~~KY~~~~ 349 (372)
+||.||+|||++|..+++.+..+|... .|++.++|.+|+..|.++|.... ...+..+..||..++
T Consensus 195 ~Ps~IAaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 195 PPFMIALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 999999999999999998766778754 59999999999999999987632 235778888888777
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=8.9e-36 Score=279.76 Aligned_cols=214 Identities=18% Similarity=0.259 Sum_probs=182.5
Q ss_pred chhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchh
Q 017386 124 DYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVE 203 (372)
Q Consensus 124 ~yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~ 203 (372)
+..++++++....||..+++||.+++..|+|+++|+++|++|||||++.+++.+.++|++|+||||||||+||. ++.+.
T Consensus 17 s~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~ 95 (257)
T 2ivx_A 17 SRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLE 95 (257)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHH
Confidence 33444445555689999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred hhhccc--------------cCccC--hHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHH
Q 017386 204 DFCYIT--------------DNTYT--KDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYL 267 (372)
Q Consensus 204 ~l~~~~--------------~~~~t--~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl 267 (372)
+++.++ ++.|+ +++|++||+.||++|+|++++|||+.|+.+|++.++.+. .+..+++++
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~-----~~~~~A~~~ 170 (257)
T 2ivx_A 96 HVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK-----DLAQTSYFM 170 (257)
T ss_dssp HHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH-----HHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc-----HHHHHHHHH
Confidence 997543 45566 899999999999999999999999999999998875432 355689999
Q ss_pred HHHHhc-chhccCCcHHHHHHHHHHHHHHHhCCC------CCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCCCChhH
Q 017386 268 AELSLL-DYACVKFLPSSVAASVIFLARFITQPS------KHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQA 340 (372)
Q Consensus 268 ~elsl~-d~~~~~~~PS~iAaAai~lA~~~l~~~------~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~~~~~a 340 (372)
++.++. +..++.|+||.||+|||++|...++.. ..+|...+ .+||+.+++.+|+..|.+++... ...++.
T Consensus 171 ~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~-~~~l~~ 247 (257)
T 2ivx_A 171 ATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKT-PNRLKK 247 (257)
T ss_dssp HHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred HHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhC-hHHhhH
Confidence 999986 455899999999999999999998732 24587644 45899999999999999999653 457778
Q ss_pred HHHhhC
Q 017386 341 VREKYK 346 (372)
Q Consensus 341 v~~KY~ 346 (372)
|+.++.
T Consensus 248 ~~~~~~ 253 (257)
T 2ivx_A 248 IRNWRA 253 (257)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887664
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=261.85 Aligned_cols=187 Identities=13% Similarity=0.165 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHHHhhhccCCCCchhhhhccccC-----
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNR-QKLQLLGVSSMLIASKYEEISPPNVEDFCYITDN----- 211 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~-~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~----- 211 (372)
|..+++||.+++..++|+++|+++|++|+|||++.+.+.+ .++|++|+||||||||+|| .++.+.|++.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 57889999988864
Q ss_pred -ccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHH
Q 017386 212 -TYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVI 290 (372)
Q Consensus 212 -~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai 290 (372)
.+++++|.+||+.||+.|+|++.++||+.|+.+|++.++.+ ..+...|+++++.++.++.++.|+||.||+|||
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~-----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN-----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 68999999999999999999999999999999999865322 235678999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhc
Q 017386 291 FLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYLSR 333 (372)
Q Consensus 291 ~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~ 333 (372)
++|....+...+.|...+ .|++.+++.+|+..|.++|...
T Consensus 182 ~lA~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 182 LISCCNDENTIPKLLDLI---KSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHTSCTTHHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCCCCCCcchh---hcCCHHHHHHHHHHHHHHHhhC
Confidence 999988764222344443 3899999999999999999654
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3e-34 Score=281.30 Aligned_cols=211 Identities=19% Similarity=0.250 Sum_probs=178.1
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhh
Q 017386 125 YVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVED 204 (372)
Q Consensus 125 yl~~~q~~it~~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~ 204 (372)
..++++.+....||..+++||.+|+..|+|+++|+++|++|||||++.+.+.+.++|++|+||||||||+||. ++.+.+
T Consensus 25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d 103 (358)
T 2pk2_A 25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEH 103 (358)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHH
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHH
Confidence 3344455556789999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred hhccc--------------cCccC--hHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 017386 205 FCYIT--------------DNTYT--KDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLA 268 (372)
Q Consensus 205 l~~~~--------------~~~~t--~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~ 268 (372)
++.++ ++.|+ +++|++||+.||++|+|++.++||+.||..|++.+..+. .+..++++++
T Consensus 104 ~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~-----~l~~~A~~ll 178 (358)
T 2pk2_A 104 VIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK-----DLAQTSYFMA 178 (358)
T ss_dssp HHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH-----HHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHH
Confidence 98654 44565 899999999999999999999999999999998775432 3567899999
Q ss_pred HHHhcch-hccCCcHHHHHHHHHHHHHHHhCCC------CCCcHHHHHHHhCCChhhHHHHHHHHHHHHhhcCCCChhHH
Q 017386 269 ELSLLDY-ACVKFLPSSVAASVIFLARFITQPS------KHPWTASLQQYSGYKPSEIEGCVLILHDLYLSRRGGNLQAV 341 (372)
Q Consensus 269 elsl~d~-~~~~~~PS~iAaAai~lA~~~l~~~------~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~~~~~~~~~av 341 (372)
+.++.++ .++.|+||.||+|||++|..+++.. ..+|...+ ..+|+.++|.+|+..|.++|.... ..++.+
T Consensus 179 ~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~-~~L~~i 255 (358)
T 2pk2_A 179 TNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTP-NRLKRI 255 (358)
T ss_dssp HHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCT-THHHHH
T ss_pred HHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCc-ccccch
Confidence 9999644 4899999999999999999998732 24576544 358899999999999999986543 356565
Q ss_pred HHh
Q 017386 342 REK 344 (372)
Q Consensus 342 ~~K 344 (372)
..-
T Consensus 256 ~~~ 258 (358)
T 2pk2_A 256 WNW 258 (358)
T ss_dssp HHT
T ss_pred hcc
Confidence 543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=9.8e-32 Score=260.26 Aligned_cols=209 Identities=12% Similarity=0.119 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccC-
Q 017386 135 ANMRGVLVDWLVEVAEEYK--LVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDN- 211 (372)
Q Consensus 135 ~~~R~~lvdWl~ev~~~~~--l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~- 211 (372)
..+|...++||.+++..|+ |+++|+++|++|||||++.+++.+.++|++|+||||||||+||. ++++.+|++.+.+
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 3689999999999999999 99999999999999999999999999999999999999999997 6789999976643
Q ss_pred ----ccChHHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHhcchhccCCcHHH
Q 017386 212 ----TYTKDEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQED---YNASNLQLEFLGYYLAELSLLDYACVKFLPSS 284 (372)
Q Consensus 212 ----~~t~~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~---~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~ 284 (372)
.|++++|++||+.||++|+|++.++||+.||..|+..+... .+ ....+...|+++++.++.++.++.|+||.
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~-~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~ 211 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILE-NPEILRKTADDFLNRIALTDAYLLYTPSQ 211 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHHHHHTTSTHHHHSCHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccHHHcCCHHH
Confidence 36789999999999999999999999999999998765321 11 12245678999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHH--hCCChhhHHHHHHHHHHHHhhcCCC---ChhHHHHhh
Q 017386 285 VAASVIFLARFITQPSKHPWTASLQQY--SGYKPSEIEGCVLILHDLYLSRRGG---NLQAVREKY 345 (372)
Q Consensus 285 iAaAai~lA~~~l~~~~~~w~~~L~~~--tg~~~~~l~~c~~~l~~l~~~~~~~---~~~av~~KY 345 (372)
||+|||++|...++...+.|...+..+ ++++.+++.+|+..|.+++...... .+.+|.+|.
T Consensus 212 IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 212 IALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 999999999999987678899887665 7889999999999999999775332 456666664
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=1.2e-25 Score=204.17 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccCh
Q 017386 136 NMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTK 215 (372)
Q Consensus 136 ~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~ 215 (372)
+......+||.+++..++|++.|+..|+.|+|||+..+.+...+.+++|+||||||||+||. |.++.|++.+++ ++.
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 45677899999999999999999999999999999999999999999999999999999997 889999998887 889
Q ss_pred HHHHHHHHHHHHHcCCcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHH
Q 017386 216 DEVVKMEADILKSLKFELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARF 295 (372)
Q Consensus 216 ~~i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~ 295 (372)
.+|.++|+.||+.|+|++..++|+.|+.+|.+.++.+. .+..+++++++.++.+.-+.+++|+.||+|||++|..
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~ 154 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 154 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876432 3556899999999988888999999999999999999
Q ss_pred HhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 296 ITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 296 ~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
..+ .+.|...+...+|+++.++..|+..|.+..
T Consensus 155 ~~~--~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 155 ASA--EKRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp TSS--SCCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHC--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 887 467888999999999999999999887643
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=2.3e-21 Score=174.92 Aligned_cols=185 Identities=8% Similarity=0.084 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccCh
Q 017386 136 NMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTK 215 (372)
Q Consensus 136 ~~R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~ 215 (372)
+......++|.+++..++|++.+...|..|++||+....+.....+.++++|+|+|||.++ .|.++.|++.+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCH
Confidence 3456889999999999999999999999999999999999888999999999999999988 6899999998876 789
Q ss_pred HHHHHHHHHHHHHcCCcccC--cchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHH
Q 017386 216 DEVVKMEADILKSLKFELGS--PTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLA 293 (372)
Q Consensus 216 ~~i~~mE~~IL~~L~f~l~~--pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA 293 (372)
.+|.++++.|++.|+|++.. ++|+.|+.+|...++.+. .+...++++++.+..+..+.+++|+.||+||||+|
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A 158 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 158 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999 999999999998876542 35578999999999888889999999999999999
Q ss_pred HHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 294 RFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 294 ~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
....+ .+.|...+..++|+++.++..|+..|.+.+
T Consensus 159 ~~~~~--~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 159 SLLEG--EKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHTT--CCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 99887 467999999999999999999999998865
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-17 Score=162.25 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHH
Q 017386 138 RGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDE 217 (372)
Q Consensus 138 R~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~ 217 (372)
.......|.+++..++|+..+.-.|..|+.|++....+.....+.++++|||||||.++. |.++.|++.+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 456788999999999999999999999999999999999999999999999999999876 889999998876 78999
Q ss_pred HHHHHHHHHHHcC------------CcccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHH
Q 017386 218 VVKMEADILKSLK------------FELGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSV 285 (372)
Q Consensus 218 i~~mE~~IL~~L~------------f~l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~i 285 (372)
|.++++.|++.|+ +++..++|..|+.+|...++.+. .+...|++|++.+.-+.-+..++|+.|
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-----~v~~~A~~i~~~~~~~~l~~Gr~P~~I 277 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhchhcCCCHHHH
Confidence 9999999999999 99999999999999998776542 355689999999988887889999999
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 286 AASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 286 AaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
|+||||+|..+.+ ...|...+...+|+++..++.++..|.+..
T Consensus 278 AaAaIylAa~~~~--~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 278 AVVSIYLNILLFQ--IPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999887 456888899999999999999998887654
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.19 E-value=3.7e-11 Score=116.82 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHH
Q 017386 139 GVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEV 218 (372)
Q Consensus 139 ~~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i 218 (372)
......|.+++..++|+..+.-.|..++.+++....+.......++++|+|||||.++ .|-++.|++.+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 4566778999999999999999999999999999888888899999999999999976 5788999988775 678999
Q ss_pred HHHHHHHHHHcCCc------------ccCcchhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhccCCcHHHHH
Q 017386 219 VKMEADILKSLKFE------------LGSPTVKTFLRRFTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVA 286 (372)
Q Consensus 219 ~~mE~~IL~~L~f~------------l~~pTp~~Fl~~~l~~~~~~~~~~~~~~~~la~yl~elsl~d~~~~~~~PS~iA 286 (372)
-+..+.|++.|+.. +...+|.+|+.+|...++.+. .+...|..|++.+.-+.-....+|+.||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-----~v~~~A~~i~~~~~~~~i~~GR~P~~IA 278 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPITIA 278 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhcccccCCChHHHH
Confidence 99999999999974 667789999999998776533 3445788888777665555688999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHH
Q 017386 287 ASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHD 328 (372)
Q Consensus 287 aAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~ 328 (372)
+||||+|..+.+. ..-...+...+|.++.-++..+..|.+
T Consensus 279 AAaIylAa~l~g~--~~t~~eIa~v~~Vse~TIr~rykel~~ 318 (345)
T 4bbr_M 279 VVSIYLNILLFQI--PITAAKVGQTLQVTEGTIKSGYKILYE 318 (345)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999988763 334466778888888877777766654
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.45 E-value=9.2e-07 Score=83.00 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhcc---ccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHH
Q 017386 141 LVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL---NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDE 217 (372)
Q Consensus 141 lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~---~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~ 217 (372)
+-+|+.++....+++..++-.|+.|+||+... ..+.....+-+-++||.+|+|+-+.....-..+..++ .++.++
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHHH
Confidence 56789999999999999999999999999874 3456778899999999999999887777777787774 478999
Q ss_pred HHHHHHHHHHHcCCcccCcchhhHHHHHHHH
Q 017386 218 VVKMEADILKSLKFELGSPTVKTFLRRFTRV 248 (372)
Q Consensus 218 i~~mE~~IL~~L~f~l~~pTp~~Fl~~~l~~ 248 (372)
+-.||+..|..|+|+|.+. ...|..+++..
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 9999999999999999765 55666665544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.43 E-value=0.011 Score=52.06 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHH
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKME 222 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE 222 (372)
++|...+..++++.++...|..++.+......+.......++++|+++|++.... +.+..++..+++ ++...|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 4578889999999999999999999999877777888999999999999998663 457788877766 5788999999
Q ss_pred HHHHHHcCCccc
Q 017386 223 ADILKSLKFELG 234 (372)
Q Consensus 223 ~~IL~~L~f~l~ 234 (372)
..+.+.|+.++.
T Consensus 187 ~~l~~~l~~~~~ 198 (200)
T 1ais_B 187 KELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHcCCCCC
Confidence 999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.33 E-value=0.12 Score=45.60 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHH
Q 017386 142 VDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKM 221 (372)
Q Consensus 142 vdWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~m 221 (372)
.++|...+..++++.++..+|..++..-+...-+.......+|++|+++|++..+. +....++...++ ++..+|.+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~~--v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIAG--VADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 35677888999999999999999999988766677788999999999999998663 345667665544 567778777
Q ss_pred HHHHHHHcC
Q 017386 222 EADILKSLK 230 (372)
Q Consensus 222 E~~IL~~L~ 230 (372)
=+.|++.++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.48 E-value=1.4 Score=39.86 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhh-ccccccchhHHHHHHHHHHHHhhhccCCCCchh---hhhccccCccChHHH
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFL-SLNVLNRQKLQLLGVSSMLIASKYEEISPPNVE---DFCYITDNTYTKDEV 218 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfl-s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~---~l~~~~~~~~t~~~i 218 (372)
+||......++.+.++..+|..++..-+ .....-......||++|+++|+++.....|... .+-...+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 3556666777888888888888875444 233345567889999999999998665443221 122222345789999
Q ss_pred HHHHHHHHHHc
Q 017386 219 VKMEADILKSL 229 (372)
Q Consensus 219 ~~mE~~IL~~L 229 (372)
..+-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.25 E-value=1.6 Score=39.57 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCch----hHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchh------hhhccccCc
Q 017386 143 DWLVEVAEEYKLVS----DTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVE------DFCYITDNT 212 (372)
Q Consensus 143 dWl~ev~~~~~l~~----~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~------~l~~~~~~~ 212 (372)
+||......++.+. +...+|..+++.-+.....-......+|++|+++|+++.....+... .+-......
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 46667777777776 57788888988877766667778899999999999998665433211 111111235
Q ss_pred cChHHHHHHHHHHHHHcC
Q 017386 213 YTKDEVVKMEADILKSLK 230 (372)
Q Consensus 213 ~t~~~i~~mE~~IL~~L~ 230 (372)
++.++|...-..|++...
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999988755
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=89.14 E-value=0.54 Score=42.23 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHHH
Q 017386 144 WLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEA 223 (372)
Q Consensus 144 Wl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE~ 223 (372)
+|......++++.++..+|..++..-+.....-......||++|+++|+++.....|. +-.... .++.++|...=.
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~ 212 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK--LLDLIK--STDAFKVILCVQ 212 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH--HHHHCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC--Ccchhh--cCCHHHHHHHHH
Confidence 4555556678889999999999988776666677788899999999999985432221 111111 567788888777
Q ss_pred HHHHHcC
Q 017386 224 DILKSLK 230 (372)
Q Consensus 224 ~IL~~L~ 230 (372)
.|++...
T Consensus 213 ~i~~ly~ 219 (235)
T 1zp2_A 213 RIISIYY 219 (235)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776533
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=88.12 E-value=1.2 Score=41.27 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHHHHH
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKME 222 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~~mE 222 (372)
++|......++.+.++..+|..++..-+.....-......||++|+++|+++..... ..+-.. -.++.++|..+-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~--~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAE--LSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHT--SCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHH--HCCCHHHHHHHH
Confidence 456667777888888999999999887766556667788999999999999865432 222111 246777777777
Q ss_pred HHHHHH
Q 017386 223 ADILKS 228 (372)
Q Consensus 223 ~~IL~~ 228 (372)
..|+..
T Consensus 234 ~~il~l 239 (285)
T 3rgf_B 234 RVILKL 239 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.52 E-value=1.5 Score=42.17 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhc-cccccchhHHHHHHHHHHHHhhhccCCCCch---hhhhccccCccChHHH
Q 017386 143 DWLVEVAEEYKLVSDTLYLTISYIDRFLS-LNVLNRQKLQLLGVSSMLIASKYEEISPPNV---EDFCYITDNTYTKDEV 218 (372)
Q Consensus 143 dWl~ev~~~~~l~~~Tl~lAV~llDRfls-~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i---~~l~~~~~~~~t~~~i 218 (372)
+||......++.+.++..+|..++..-+. ..-.-......||++|+++|+++.....|.- ..+-...+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35566667778888888889888855442 3334556788999999999999976543321 1222222345789999
Q ss_pred HHHHHHHHHHcC
Q 017386 219 VKMEADILKSLK 230 (372)
Q Consensus 219 ~~mE~~IL~~L~ 230 (372)
..+-..|++.++
T Consensus 235 ~~i~~~il~~y~ 246 (358)
T 2pk2_A 235 DELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 27
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=84.51 E-value=5.4 Score=37.99 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHH
Q 017386 260 LEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLY 330 (372)
Q Consensus 260 ~~~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~ 330 (372)
+...|..+...++-...+-..+...+|+||||+|.+..+ .+.-...+..+++++..+|..++..|.+.+
T Consensus 146 v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~--~prtl~eI~~~~~v~~keigr~~k~l~~~L 214 (345)
T 4bbr_M 146 VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE--VARTFKEIQSLIHVKTKEFGKTLNIMKNIL 214 (345)
T ss_dssp HHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC--CBCCHHHHHHHHTCCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC--CCccHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 344666666665554444567889999999999999876 456667888999999999999999887744
No 28
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=82.19 E-value=4.4 Score=36.60 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCchhHH----HHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCc----hhhhhccccCccCh
Q 017386 144 WLVEVAEEYKLVSDTL----YLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPN----VEDFCYITDNTYTK 215 (372)
Q Consensus 144 Wl~ev~~~~~l~~~Tl----~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~----i~~l~~~~~~~~t~ 215 (372)
||......++++.++. ..|..+++.-+....+-......+|++|+++|.+.....+.. ...+..+++ ++.
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~~ 232 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FST 232 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CCH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cCH
Confidence 4444555666666553 356677776655555666778899999999999985222222 344555544 678
Q ss_pred HHHHHHHHHHHHHc
Q 017386 216 DEVVKMEADILKSL 229 (372)
Q Consensus 216 ~~i~~mE~~IL~~L 229 (372)
++|...=..|.+.+
T Consensus 233 ~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 233 NTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888766666543
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=80.36 E-value=5.5 Score=35.97 Aligned_cols=86 Identities=12% Similarity=-0.015 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCchhH----HHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCC-----CchhhhhccccCc
Q 017386 142 VDWLVEVAEEYKLVSDT----LYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISP-----PNVEDFCYITDNT 212 (372)
Q Consensus 142 vdWl~ev~~~~~l~~~T----l~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~-----p~i~~l~~~~~~~ 212 (372)
.+||......++++.++ ..+|-.+++.-+....+-......+|++|+++|.+.....+ .-...+..++ .
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 35566666666776655 34577777766655556677788999999999999865431 1223343443 3
Q ss_pred cChHHHHHHHHHHHHHc
Q 017386 213 YTKDEVVKMEADILKSL 229 (372)
Q Consensus 213 ~t~~~i~~mE~~IL~~L 229 (372)
++.++|...=..|.+.+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 67788877766666543
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=77.89 E-value=4.2 Score=36.88 Aligned_cols=85 Identities=11% Similarity=-0.027 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCch-hHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHH
Q 017386 142 VDWLVEVAEEYKLVS-DTLYLTISYIDRFLSLNV-LNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVV 219 (372)
Q Consensus 142 vdWl~ev~~~~~l~~-~Tl~lAV~llDRfls~~~-v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~ 219 (372)
.+||......++++. .+..+|-.+++.-+.... +-......+|++|+++|++.-+. +.-...+..+++ ++.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHHHHH
Confidence 356666777777665 666777777776554444 55666789999999999997553 222334444443 6788888
Q ss_pred HHHHHHHHHc
Q 017386 220 KMEADILKSL 229 (372)
Q Consensus 220 ~mE~~IL~~L 229 (372)
..=..|+..+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666643
No 31
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=76.93 E-value=9.4 Score=35.85 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCc-hhhhhccccCccChHHHHHHHHHHHHHcC
Q 017386 156 SDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPN-VEDFCYITDNTYTKDEVVKMEADILKSLK 230 (372)
Q Consensus 156 ~~Tl~lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~-i~~l~~~~~~~~t~~~i~~mE~~IL~~L~ 230 (372)
.....+|..++..-+.....-......||++|+++|++......+. ..++....+..++.++|...=..|+..+.
T Consensus 185 ~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 185 EILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 3455678788776555444556678899999999999987655443 33344443456778888888777776554
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=76.87 E-value=13 Score=33.76 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--CChhhHHHHHHHHHHHH
Q 017386 262 FLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG--YKPSEIEGCVLILHDLY 330 (372)
Q Consensus 262 ~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg--~~~~~l~~c~~~l~~l~ 330 (372)
.++..+++-.+....+-+...-.+|+||+++|.+.... .++-...+..+++ |+.+++..+-..|.+.+
T Consensus 60 ~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~-~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L 129 (269)
T 2b9r_A 60 YMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEM-YPPEIGDFAFVTDNTYTKHQIRQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccc-cCccHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 35666666666555566778899999999999998764 2445667777774 78899988887776654
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=75.67 E-value=1.8 Score=41.26 Aligned_cols=68 Identities=12% Similarity=-0.034 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHh
Q 017386 262 FLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYL 331 (372)
Q Consensus 262 ~la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~ 331 (372)
..|..|...++....+-..+...+|+||||+|.+..+ .+.-...+..+++++..+|..|...|.+.+.
T Consensus 148 d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~--~prtl~ei~~~~~v~~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 148 DCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE--VARTFKEIQSLIHVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp THHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB--SSCCHHHHHHSSSCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC--CCccHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 3555666565554445578889999999999988665 4566678889999999999999999888764
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=72.25 E-value=24 Score=31.85 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--CChhhHHHHHHHHHHHH
Q 017386 263 LGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG--YKPSEIEGCVLILHDLY 330 (372)
Q Consensus 263 la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg--~~~~~l~~c~~~l~~l~ 330 (372)
++-.+++-.+....+.+...-.+|+||+++|.+.... .++-...+..+++ |+.+++..+-..|.+.+
T Consensus 80 lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~-~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 80 LAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp HHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHC
Confidence 4444444444444455678899999999999998774 3445566667764 78888888877776644
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=65.15 E-value=26 Score=32.54 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--CChhhHHHHHHHHHHHH
Q 017386 263 LGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG--YKPSEIEGCVLILHDLY 330 (372)
Q Consensus 263 la~yl~elsl~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg--~~~~~l~~c~~~l~~l~ 330 (372)
+|-.+++--+....+.....-.+|++|+++|.+.... .++-...+..+++ |+.+++..+=..|.+.+
T Consensus 94 lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~-~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L 162 (306)
T 3g33_B 94 LAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRET-TPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKL 162 (306)
T ss_dssp HHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCS-SCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHhccCccHHHHHHHHHHHHHHc
Confidence 3333444333334455678889999999999998764 2333445666665 78888888777666644
No 36
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=62.05 E-value=14 Score=30.70 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH------------------------HcCCchhHHH---HHHHHHHHhhccccccchhHHHH
Q 017386 131 KDVSANMRGVLVDWLVEVAE------------------------EYKLVSDTLY---LTISYIDRFLSLNVLNRQKLQLL 183 (372)
Q Consensus 131 ~~it~~~R~~lvdWl~ev~~------------------------~~~l~~~Tl~---lAV~llDRfls~~~v~~~~lqLv 183 (372)
++|+...=..+++|+..-.. .++++.++++ +|.+|||- -.|+
T Consensus 47 ~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I-----------~~Ll 115 (159)
T 2ast_A 47 PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI-----------KGLL 115 (159)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTC-----------HHHH
T ss_pred CCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhH-----------HHHH
Confidence 46777777778888764331 1466666654 46666553 3578
Q ss_pred HHHHHHHHhhhccCCCCchhhhhccccCccChHHHH
Q 017386 184 GVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVV 219 (372)
Q Consensus 184 a~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~ 219 (372)
-++|-++|..+....+-.+..+..+. +.||+++-.
T Consensus 116 d~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe~ 150 (159)
T 2ast_A 116 DVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEEA 150 (159)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHHH
Confidence 89999999999887777777777764 347776543
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=60.84 E-value=40 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=40.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHh--CCChhhHHHHHHHHHHHHh
Q 017386 277 CVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYS--GYKPSEIEGCVLILHDLYL 331 (372)
Q Consensus 277 ~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t--g~~~~~l~~c~~~l~~l~~ 331 (372)
..+...-.+|+||+++|.+.... .++-...+..++ .|+.+++..+-..|.+.+.
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~-~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEI-YPPKLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhccc-CCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 44667889999999999998764 344456666777 4788999888877776553
No 38
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=60.09 E-value=12 Score=31.31 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHHH
Q 017386 181 QLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVV 219 (372)
Q Consensus 181 qLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i~ 219 (372)
.|+-++|-++|..+....+-.+..+..+.. .||+++-.
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe~ 149 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 588899999999998877767777777744 47776543
No 39
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=59.60 E-value=48 Score=29.18 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhcc---ccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChH
Q 017386 140 VLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSL---NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKD 216 (372)
Q Consensus 140 ~lvdWl~ev~~~~~l~~~Tl~lAV~llDRfls~---~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~ 216 (372)
.+.+-|..++++-+++..++--||.+--.|.-. ....-++-+-++++|++||+--- ..|..+.++..+ |.+..
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~-~~PiplaE~r~l-D~sL~-- 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEA-QQPLPLAEVRCL-DSSLG-- 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHH-CTTCC--
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHc-CCCccHHHHHHH-hhhhh--
Confidence 345556889999999999999999999998754 34556678899999999999742 235666666433 33333
Q ss_pred HHHHHHHHHHHHcCC
Q 017386 217 EVVKMEADILKSLKF 231 (372)
Q Consensus 217 ~i~~mE~~IL~~L~f 231 (372)
||.---.+|++.|+-
T Consensus 90 Dvelrr~Eiv~~l~l 104 (260)
T 3h4c_A 90 DVELRRADIVRELHL 104 (260)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 333333456676664
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=56.83 E-value=12 Score=31.72 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=37.9
Q ss_pred cCCchhHHH---HHHHHHHHhhccccccchhHHHHHHHHHHHHhhhccCCCCchhhhhccccCccChHHH
Q 017386 152 YKLVSDTLY---LTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEV 218 (372)
Q Consensus 152 ~~l~~~Tl~---lAV~llDRfls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~~~~t~~~i 218 (372)
+++.+++++ +|.+|||- -.|+-++|-.+|.++....|-.+..+..+.+ .||+++-
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe 156 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEE 156 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 356666654 45565553 2578899999999998877766777776654 4787654
No 41
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=44.74 E-value=1.3e+02 Score=26.88 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=37.3
Q ss_pred hccCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--CChhhHHHHHHHHHHHH
Q 017386 276 ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG--YKPSEIEGCVLILHDLY 330 (372)
Q Consensus 276 ~~~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg--~~~~~l~~c~~~l~~l~ 330 (372)
.......-.+|++|+++|.+.... .++-...+..+++ |+.+++...=..|.+.+
T Consensus 85 ~v~~~~lqLvg~tcl~iAsK~eE~-~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L 140 (252)
T 1f5q_B 85 RIDRENYQSTAAVALHIAGKVRAY-MPIKATQLAYLCGGATTADKLLTLEVKSLDTL 140 (252)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 344556789999999999998775 3444556666664 67778877666555543
No 42
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=43.55 E-value=29 Score=28.21 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHHHH------------------------HcCCchhHHH---HHHHHHHHhhccccccchhHHHH
Q 017386 131 KDVSANMRGVLVDWLVEVAE------------------------EYKLVSDTLY---LTISYIDRFLSLNVLNRQKLQLL 183 (372)
Q Consensus 131 ~~it~~~R~~lvdWl~ev~~------------------------~~~l~~~Tl~---lAV~llDRfls~~~v~~~~lqLv 183 (372)
++|+...=..+++|+..-.. .++++.++++ +|.+|||- -.|+
T Consensus 42 ~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I-----------~~Ll 110 (141)
T 1fs1_B 42 PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI-----------KGLL 110 (141)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC-----------HHHH
T ss_pred CCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh-----------hHHH
Confidence 46777777788888764331 1456666654 46666654 3578
Q ss_pred HHHHHHHHhhhccCCCCchhhhhcc
Q 017386 184 GVSSMLIASKYEEISPPNVEDFCYI 208 (372)
Q Consensus 184 a~tcL~IAsK~eE~~~p~i~~l~~~ 208 (372)
-++|-++|..+....+-.++.+..+
T Consensus 111 dl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 111 DVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 8899999999977655555555544
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=30.32 E-value=95 Score=28.83 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=45.4
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHhhcc----ccccchhHHHHHHHHHHHHhhhccCCCCchhhhhcccc
Q 017386 145 LVEVAEEYKLVSDTLYLTISYIDRFLSL----NVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITD 210 (372)
Q Consensus 145 l~ev~~~~~l~~~Tl~lAV~llDRfls~----~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~~~~ 210 (372)
..++|..++++..|.--|..++.+.-+. .....+ -+..-.+|||+|+.-.+....++..+++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 5678999999999999999999996553 123333 3333445599999876777777777776554
No 44
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=28.80 E-value=3.1e+02 Score=25.21 Aligned_cols=86 Identities=9% Similarity=0.024 Sum_probs=54.1
Q ss_pred chhhHHHHHHHHHhcccchhhHHHHHHHH-HHHHHHhcchhc--cCCcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC
Q 017386 237 TVKTFLRRFTRVAQEDYNASNLQLEFLGY-YLAELSLLDYAC--VKFLPSSVAASVIFLARFITQPSKHPWTASLQQYSG 313 (372)
Q Consensus 237 Tp~~Fl~~~l~~~~~~~~~~~~~~~~la~-yl~elsl~d~~~--~~~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg 313 (372)
+..+|+.++.+...-... ...++. ||--+......+ ......-+-.+|+.+|.+.++. ...|...-.++.|
T Consensus 76 SI~~Yl~RI~k~t~ls~~-----~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD-~~ysN~~wAkVgG 149 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHC-----VLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCD-SFSTNAHYAKVGG 149 (293)
T ss_dssp CHHHHHHHHHHTTTCCHH-----HHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCS-SCCCHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccc-cccChhHhhhccC
Confidence 456777777765443221 111232 333333322333 3567888999999999999985 5678888889999
Q ss_pred CChhhHHHHHHHHHH
Q 017386 314 YKPSEIEGCVLILHD 328 (372)
Q Consensus 314 ~~~~~l~~c~~~l~~ 328 (372)
++..|+...=.....
T Consensus 150 isl~ELN~LE~eFL~ 164 (293)
T 2pmi_B 150 VRCHELNILENDFLK 164 (293)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 998887765444443
No 45
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=26.70 E-value=1.5e+02 Score=22.53 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCChhhHHHHHHHHHHHHh
Q 017386 280 FLPSSVAASVIFLARFITQPSKHPWTASLQQYSGYKPSEIEGCVLILHDLYL 331 (372)
Q Consensus 280 ~~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~tg~~~~~l~~c~~~l~~l~~ 331 (372)
+.--.-++||+|.+.+.... ..-...|...+|.++.++......+.++..
T Consensus 43 ~s~P~f~aaA~~~acr~~K~--kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKL--KVDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTC--CCCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHcc--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33446677788888888764 344678889999999999998888877653
No 46
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=26.00 E-value=48 Score=19.16 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHcCCc
Q 017386 215 KDEVVKMEADILKSLKFE 232 (372)
Q Consensus 215 ~~~i~~mE~~IL~~L~f~ 232 (372)
.++|.++|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 478999999999999987
No 47
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=25.87 E-value=1.7e+02 Score=23.73 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhcc------ccccchhHHHHHHHHHHHHhhh--ccCCCCchhhhhc
Q 017386 139 GVLVDWLVEVAEEY---KLVSDTLYLTISYIDRFLSL------NVLNRQKLQLLGVSSMLIASKY--EEISPPNVEDFCY 207 (372)
Q Consensus 139 ~~lvdWl~ev~~~~---~l~~~Tl~lAV~llDRfls~------~~v~~~~lqLva~tcL~IAsK~--eE~~~p~i~~l~~ 207 (372)
+.+|-|+..|-+.+ |..+..|-.-.+++--|+.. ..-....+|-+-+|||++|=-| .|+.-|--.-++.
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~ 107 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 107 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhcccccccCcchhhc
Confidence 46889999888875 33444333333333334322 2235667999999999999888 5666554444442
Q ss_pred cccCccChHHHHHHHHHHHHHcC
Q 017386 208 ITDNTYTKDEVVKMEADILKSLK 230 (372)
Q Consensus 208 ~~~~~~t~~~i~~mE~~IL~~L~ 230 (372)
- +++.+.+-=..|++.+.
T Consensus 108 ~-----~k~~FW~rcl~iin~~S 125 (149)
T 3o0g_D 108 S-----CKEAFWDRCLSVINLMS 125 (149)
T ss_dssp S-----CHHHHHHHHHHHHHHHH
T ss_pred c-----cHHHHHHHHHHHHHhhc
Confidence 1 34555554444444443
No 48
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=24.58 E-value=1.6e+02 Score=25.05 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhc------cccccchhHHHHHHHHHHHHhhh--ccCCCCchhhhhc
Q 017386 139 GVLVDWLVEVAEEY---KLVSDTLYLTISYIDRFLS------LNVLNRQKLQLLGVSSMLIASKY--EEISPPNVEDFCY 207 (372)
Q Consensus 139 ~~lvdWl~ev~~~~---~l~~~Tl~lAV~llDRfls------~~~v~~~~lqLva~tcL~IAsK~--eE~~~p~i~~l~~ 207 (372)
..+|-||..|-+.+ +..+..|-.-.+++--|+. ...-...++|-+-+|||+||=-| .|+.-|--.-++.
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve 152 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVE 152 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCS
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHhhCccccccCcceeec
Confidence 46899999998876 3334333333333333332 23335677999999999999888 5666554444442
Q ss_pred cccCccChHHHHHHHHHHHHHcCCccc--CcchhhHHHHHHHHHh
Q 017386 208 ITDNTYTKDEVVKMEADILKSLKFELG--SPTVKTFLRRFTRVAQ 250 (372)
Q Consensus 208 ~~~~~~t~~~i~~mE~~IL~~L~f~l~--~pTp~~Fl~~~l~~~~ 250 (372)
-+++.+..-=..|++.+.=++- ...|..|-+.|...-+
T Consensus 153 -----~~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eLK~ 192 (208)
T 1unl_D 153 -----SCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKN 192 (208)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHHh
Confidence 2344444444444444333321 2346666666655433
Done!